Query 002125
Match_columns 963
No_of_seqs 893 out of 5647
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 17:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2E-123 5E-128 1177.4 73.9 869 13-901 1-1004(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 8.7E-57 1.9E-61 539.3 30.0 472 200-715 161-678 (889)
3 PLN03194 putative disease resi 100.0 1.1E-41 2.5E-46 322.9 15.4 154 23-190 23-179 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 6.3E-37 1.4E-41 334.2 14.2 263 202-468 1-284 (287)
5 PLN00113 leucine-rich repeat r 99.9 5.6E-24 1.2E-28 271.3 19.6 222 639-860 193-463 (968)
6 PLN00113 leucine-rich repeat r 99.9 1.7E-23 3.8E-28 266.8 16.6 216 649-867 299-545 (968)
7 KOG4194 Membrane glycoprotein 99.8 7.1E-23 1.5E-27 221.0 -2.2 284 536-827 83-404 (873)
8 KOG0444 Cytoskeletal regulator 99.8 1.2E-21 2.5E-26 212.5 -2.3 248 565-827 20-280 (1255)
9 KOG4194 Membrane glycoprotein 99.8 3E-20 6.4E-25 201.0 7.2 296 560-861 81-428 (873)
10 PF01582 TIR: TIR domain; Int 99.8 2.5E-20 5.3E-25 179.0 5.7 129 29-157 1-140 (141)
11 smart00255 TIR Toll - interleu 99.8 1.3E-18 2.7E-23 167.7 9.9 134 26-160 1-138 (140)
12 KOG0444 Cytoskeletal regulator 99.8 3.7E-20 7.9E-25 201.0 -2.6 223 574-812 147-372 (1255)
13 KOG0472 Leucine-rich repeat pr 99.7 4E-20 8.6E-25 191.9 -12.1 230 567-815 58-288 (565)
14 KOG0472 Leucine-rich repeat pr 99.7 5.3E-20 1.2E-24 191.0 -11.9 244 554-816 65-311 (565)
15 KOG0618 Serine/threonine phosp 99.7 8.3E-19 1.8E-23 200.1 -6.7 208 650-860 256-487 (1081)
16 PLN03210 Resistant to P. syrin 99.7 1.6E-15 3.4E-20 194.0 18.8 231 554-794 631-909 (1153)
17 PRK15370 E3 ubiquitin-protein 99.6 2.2E-15 4.7E-20 179.9 15.6 200 555-813 179-378 (754)
18 KOG0617 Ras suppressor protein 99.6 8E-18 1.7E-22 155.2 -4.8 146 649-799 47-193 (264)
19 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.2E-22 153.5 -4.8 163 646-814 22-185 (264)
20 PRK15387 E3 ubiquitin-protein 99.6 8.8E-15 1.9E-19 173.5 14.3 211 555-813 223-433 (788)
21 PRK15370 E3 ubiquitin-protein 99.5 1.6E-14 3.4E-19 172.6 11.5 223 555-813 200-426 (754)
22 PF13676 TIR_2: TIR domain; PD 99.5 8.4E-15 1.8E-19 132.3 3.4 86 29-120 1-86 (102)
23 PRK15387 E3 ubiquitin-protein 99.5 2.9E-13 6.2E-18 160.8 16.7 254 559-863 206-459 (788)
24 PRK04841 transcriptional regul 99.5 6E-12 1.3E-16 160.1 27.2 292 192-504 9-335 (903)
25 KOG0618 Serine/threonine phosp 99.5 1.1E-15 2.5E-20 174.8 -6.4 232 578-826 242-487 (1081)
26 KOG4237 Extracellular matrix p 99.4 2.9E-14 6.2E-19 148.8 -2.5 128 555-715 68-198 (498)
27 cd00116 LRR_RI Leucine-rich re 99.3 4.9E-13 1.1E-17 148.4 1.9 154 660-813 110-289 (319)
28 cd00116 LRR_RI Leucine-rich re 99.3 3.4E-13 7.4E-18 149.6 0.6 220 568-814 14-262 (319)
29 PRK00411 cdc6 cell division co 99.2 9.7E-10 2.1E-14 125.6 24.6 278 194-483 27-358 (394)
30 PRK00080 ruvB Holliday junctio 99.2 2.1E-10 4.5E-15 126.9 13.7 258 193-483 21-310 (328)
31 KOG0532 Leucine-rich repeat (L 99.1 1.8E-12 3.9E-17 141.4 -3.9 192 577-811 75-269 (722)
32 COG2909 MalT ATP-dependent tra 99.1 3.3E-09 7.2E-14 122.5 22.1 292 192-504 14-341 (894)
33 TIGR00635 ruvB Holliday juncti 99.1 7.1E-10 1.5E-14 121.9 16.0 253 197-483 4-289 (305)
34 KOG4237 Extracellular matrix p 99.1 2.2E-12 4.7E-17 135.0 -3.7 264 533-811 69-355 (498)
35 TIGR02928 orc1/cdc6 family rep 99.1 1.9E-08 4.2E-13 113.6 26.1 280 193-483 11-350 (365)
36 PF01637 Arch_ATPase: Archaeal 99.1 2.3E-10 5E-15 120.6 8.9 192 199-394 1-233 (234)
37 COG3899 Predicted ATPase [Gene 99.1 2.4E-09 5.3E-14 131.0 18.5 302 198-503 1-388 (849)
38 PF05729 NACHT: NACHT domain 99.1 1.7E-09 3.6E-14 107.3 13.4 142 221-364 1-163 (166)
39 KOG0532 Leucine-rich repeat (L 99.0 1.8E-11 3.9E-16 133.8 -3.7 165 567-774 88-252 (722)
40 COG4886 Leucine-rich repeat (L 99.0 5.7E-10 1.2E-14 127.6 7.8 159 649-814 130-289 (394)
41 KOG3207 Beta-tubulin folding c 98.9 1.6E-10 3.5E-15 122.9 0.3 134 657-792 196-339 (505)
42 TIGR03015 pepcterm_ATPase puta 98.9 9.9E-08 2.2E-12 102.9 21.8 175 220-399 43-242 (269)
43 COG4886 Leucine-rich repeat (L 98.9 1.2E-09 2.5E-14 125.0 6.4 185 572-798 111-296 (394)
44 KOG1259 Nischarin, modulator o 98.9 5.2E-10 1.1E-14 113.0 1.2 131 678-815 280-412 (490)
45 KOG3207 Beta-tubulin folding c 98.8 9.1E-10 2E-14 117.3 0.2 158 655-814 143-313 (505)
46 PF14580 LRR_9: Leucine-rich r 98.8 3.1E-09 6.8E-14 104.1 3.4 120 683-809 20-147 (175)
47 COG3903 Predicted ATPase [Gene 98.8 1E-08 2.2E-13 110.0 7.3 257 218-483 12-292 (414)
48 PRK06893 DNA replication initi 98.8 1.2E-07 2.6E-12 98.9 15.1 150 220-395 39-203 (229)
49 KOG1259 Nischarin, modulator o 98.8 1.8E-09 3.9E-14 109.1 0.8 133 656-796 282-416 (490)
50 KOG4658 Apoptotic ATPase [Sign 98.8 2.4E-09 5.2E-14 130.6 1.7 93 519-614 533-631 (889)
51 PF14580 LRR_9: Leucine-rich r 98.7 1.5E-08 3.2E-13 99.4 5.0 118 690-814 5-125 (175)
52 PTZ00112 origin recognition co 98.7 6.4E-07 1.4E-11 104.6 18.7 242 193-446 751-1031(1164)
53 COG2256 MGS1 ATPase related to 98.7 1.8E-07 3.8E-12 99.8 12.2 171 195-390 22-207 (436)
54 PRK13342 recombination factor 98.6 1.9E-06 4.1E-11 98.4 21.1 178 193-395 8-196 (413)
55 TIGR03420 DnaA_homol_Hda DnaA 98.6 6.8E-07 1.5E-11 93.6 14.5 173 196-396 14-202 (226)
56 KOG3678 SARM protein (with ste 98.6 1.9E-07 4.1E-12 99.5 10.0 143 24-193 610-761 (832)
57 PRK14961 DNA polymerase III su 98.6 4.2E-06 9E-11 93.8 21.1 180 193-391 12-216 (363)
58 KOG1909 Ran GTPase-activating 98.6 4.1E-09 8.8E-14 109.6 -2.7 231 554-814 27-310 (382)
59 PF05496 RuvB_N: Holliday junc 98.6 1.2E-06 2.5E-11 87.7 14.4 174 193-393 20-219 (233)
60 PLN03150 hypothetical protein; 98.5 1.2E-07 2.5E-12 113.8 7.8 96 649-746 433-529 (623)
61 PRK15386 type III secretion pr 98.5 2.5E-07 5.4E-12 101.4 8.7 137 655-816 49-191 (426)
62 PRK07003 DNA polymerase III su 98.5 4.7E-06 1E-10 97.3 19.5 183 193-394 12-220 (830)
63 PRK14963 DNA polymerase III su 98.5 1.2E-05 2.7E-10 92.9 22.9 189 193-392 10-214 (504)
64 PLN03150 hypothetical protein; 98.5 2.1E-07 4.6E-12 111.5 8.3 91 660-753 420-511 (623)
65 KOG1909 Ran GTPase-activating 98.5 1E-08 2.2E-13 106.8 -2.9 217 573-813 26-281 (382)
66 PRK12402 replication factor C 98.5 3.6E-06 7.9E-11 94.0 17.2 195 193-393 11-224 (337)
67 PRK07471 DNA polymerase III su 98.5 2.1E-05 4.6E-10 87.3 22.8 192 193-395 15-238 (365)
68 PTZ00202 tuzin; Provisional 98.5 1.8E-05 4E-10 86.2 21.1 189 163-362 220-432 (550)
69 PRK04195 replication factor C 98.5 3.4E-06 7.3E-11 98.3 16.9 181 192-393 9-200 (482)
70 PRK00440 rfc replication facto 98.4 7E-06 1.5E-10 91.0 18.4 183 193-391 13-199 (319)
71 TIGR01242 26Sp45 26S proteasom 98.4 1.5E-06 3.3E-11 97.7 12.5 174 195-389 120-328 (364)
72 PRK14960 DNA polymerase III su 98.4 1.1E-05 2.3E-10 93.6 19.2 181 193-392 11-216 (702)
73 PF13173 AAA_14: AAA domain 98.4 2.3E-06 4.9E-11 80.6 11.3 119 221-356 3-127 (128)
74 PRK08903 DnaA regulatory inact 98.4 3.3E-06 7.2E-11 88.4 13.6 173 195-398 16-202 (227)
75 PLN03025 replication factor C 98.4 3.5E-06 7.6E-11 92.8 14.1 183 192-390 8-195 (319)
76 PRK08727 hypothetical protein; 98.4 6.9E-06 1.5E-10 85.9 15.6 168 197-392 19-201 (233)
77 PF00308 Bac_DnaA: Bacterial d 98.4 9.1E-06 2E-10 84.0 16.2 178 199-393 11-206 (219)
78 PRK14957 DNA polymerase III su 98.4 6.6E-06 1.4E-10 95.2 16.7 184 193-395 12-221 (546)
79 PRK05564 DNA polymerase III su 98.4 1.4E-05 3.1E-10 87.8 18.8 176 197-394 4-189 (313)
80 TIGR02397 dnaX_nterm DNA polym 98.4 2.1E-05 4.6E-10 88.5 20.5 184 193-395 10-218 (355)
81 PRK14949 DNA polymerase III su 98.4 7.3E-06 1.6E-10 97.7 16.8 181 193-392 12-217 (944)
82 PRK14962 DNA polymerase III su 98.4 4.7E-05 1E-09 87.4 22.6 186 193-397 10-221 (472)
83 PRK12323 DNA polymerase III su 98.4 1.6E-05 3.4E-10 91.9 18.4 187 193-392 12-222 (700)
84 cd00009 AAA The AAA+ (ATPases 98.3 5.3E-06 1.1E-10 80.0 12.5 123 200-335 1-131 (151)
85 PRK05642 DNA replication initi 98.3 1.2E-05 2.6E-10 84.1 15.7 150 220-395 45-208 (234)
86 PRK08084 DNA replication initi 98.3 1.5E-05 3.2E-10 83.5 16.1 170 198-395 24-209 (235)
87 PRK15386 type III secretion pr 98.3 1.8E-06 3.9E-11 94.8 9.3 15 597-611 48-62 (426)
88 PRK09087 hypothetical protein; 98.3 1.3E-05 2.8E-10 83.1 15.0 139 220-395 44-195 (226)
89 PF13855 LRR_8: Leucine rich r 98.3 6.2E-07 1.4E-11 72.0 3.7 56 757-812 2-59 (61)
90 PF13855 LRR_8: Leucine rich r 98.3 5.1E-07 1.1E-11 72.5 3.1 60 732-791 1-61 (61)
91 PRK13341 recombination factor 98.3 8.6E-06 1.9E-10 97.8 14.7 172 193-390 24-212 (725)
92 PRK14956 DNA polymerase III su 98.3 6.7E-05 1.5E-09 84.7 20.6 187 193-390 14-217 (484)
93 PRK14087 dnaA chromosomal repl 98.3 3.6E-05 7.8E-10 88.2 19.0 164 220-396 141-320 (450)
94 KOG2028 ATPase related to the 98.3 6E-06 1.3E-10 86.4 11.2 177 193-390 134-331 (554)
95 COG1474 CDC6 Cdc6-related prot 98.3 3.7E-05 8.1E-10 85.2 18.3 277 193-483 13-334 (366)
96 PRK08691 DNA polymerase III su 98.3 9.5E-06 2.1E-10 94.8 13.8 181 193-392 12-217 (709)
97 PRK07940 DNA polymerase III su 98.2 2.6E-05 5.7E-10 87.2 16.9 176 197-394 5-212 (394)
98 PRK06645 DNA polymerase III su 98.2 2.6E-05 5.7E-10 89.8 17.2 184 193-391 17-225 (507)
99 KOG0531 Protein phosphatase 1, 98.2 1.7E-07 3.6E-12 107.5 -1.4 40 781-820 234-273 (414)
100 PRK09112 DNA polymerase III su 98.2 4.9E-05 1.1E-09 83.9 18.0 192 192-395 18-240 (351)
101 PRK03992 proteasome-activating 98.2 1.5E-05 3.3E-10 89.9 14.1 172 195-388 129-336 (389)
102 PRK14964 DNA polymerase III su 98.2 8.6E-05 1.9E-09 84.8 19.9 180 193-391 9-213 (491)
103 TIGR00678 holB DNA polymerase 98.2 8E-05 1.7E-09 75.4 17.5 160 208-391 3-187 (188)
104 PRK07994 DNA polymerase III su 98.2 3.5E-05 7.5E-10 90.7 16.6 181 193-392 12-217 (647)
105 PRK14955 DNA polymerase III su 98.2 4.7E-05 1E-09 86.4 17.3 194 193-392 12-225 (397)
106 PRK05896 DNA polymerase III su 98.2 3E-05 6.6E-10 89.8 15.7 179 193-390 12-215 (605)
107 PF13401 AAA_22: AAA domain; P 98.2 1.5E-05 3.2E-10 75.5 10.9 109 219-333 3-125 (131)
108 PRK14958 DNA polymerase III su 98.1 0.00011 2.4E-09 85.3 19.8 181 193-392 12-217 (509)
109 PRK14952 DNA polymerase III su 98.1 0.00014 3.1E-09 85.2 20.4 184 193-395 9-220 (584)
110 PRK14951 DNA polymerase III su 98.1 4.4E-05 9.6E-10 89.7 16.1 188 193-392 12-222 (618)
111 PRK14970 DNA polymerase III su 98.1 0.0001 2.2E-09 83.2 18.5 181 193-391 13-205 (367)
112 PRK07764 DNA polymerase III su 98.1 0.00013 2.8E-09 88.9 20.1 180 193-391 11-217 (824)
113 TIGR00362 DnaA chromosomal rep 98.1 0.00023 4.9E-09 81.4 21.1 180 198-394 112-309 (405)
114 TIGR02881 spore_V_K stage V sp 98.1 4.7E-05 1E-09 81.3 14.5 152 198-365 7-192 (261)
115 KOG0531 Protein phosphatase 1, 98.1 5.4E-07 1.2E-11 103.3 -0.4 178 572-794 90-270 (414)
116 PRK09111 DNA polymerase III su 98.1 0.00019 4E-09 84.7 20.3 191 193-393 20-231 (598)
117 PHA02544 44 clamp loader, smal 98.1 3.2E-05 7E-10 85.5 13.3 152 191-362 15-171 (316)
118 PRK14969 DNA polymerase III su 98.1 4.5E-05 9.8E-10 89.1 14.9 179 193-390 12-215 (527)
119 PRK14088 dnaA chromosomal repl 98.1 0.00011 2.4E-09 84.2 17.5 158 220-393 130-303 (440)
120 COG2255 RuvB Holliday junction 98.1 6.2E-05 1.3E-09 77.0 13.5 256 193-483 22-311 (332)
121 PRK00149 dnaA chromosomal repl 98.0 0.00011 2.4E-09 85.1 17.2 178 199-393 125-320 (450)
122 PF14516 AAA_35: AAA-like doma 98.0 0.0015 3.3E-08 72.2 25.0 199 193-401 7-245 (331)
123 PRK14959 DNA polymerase III su 98.0 0.00011 2.3E-09 85.9 16.5 186 193-397 12-223 (624)
124 PRK06305 DNA polymerase III su 98.0 0.00035 7.6E-09 80.2 20.6 181 193-390 13-217 (451)
125 PRK14954 DNA polymerase III su 98.0 0.00031 6.7E-09 83.0 20.4 192 193-390 12-223 (620)
126 PRK14950 DNA polymerase III su 98.0 0.00027 5.8E-09 84.3 19.9 191 193-394 12-220 (585)
127 PRK06620 hypothetical protein; 98.0 4.8E-05 1E-09 78.2 11.8 133 221-392 45-186 (214)
128 PRK14953 DNA polymerase III su 98.0 0.00072 1.6E-08 78.2 22.1 177 193-393 12-218 (486)
129 TIGR02903 spore_lon_C ATP-depe 98.0 8.3E-05 1.8E-09 88.6 14.5 50 193-244 150-199 (615)
130 TIGR03345 VI_ClpV1 type VI sec 98.0 0.00011 2.4E-09 90.7 15.9 193 176-389 169-390 (852)
131 TIGR02639 ClpA ATP-dependent C 98.0 0.00011 2.4E-09 90.1 15.8 166 176-364 164-358 (731)
132 PRK12422 chromosomal replicati 98.0 0.00033 7.2E-09 80.1 18.6 153 220-389 141-307 (445)
133 PRK08451 DNA polymerase III su 98.0 0.0009 2E-08 77.3 22.0 183 193-393 10-216 (535)
134 PF12799 LRR_4: Leucine Rich r 97.9 9.3E-06 2E-10 59.8 3.5 40 756-795 1-40 (44)
135 PRK07133 DNA polymerase III su 97.9 0.0002 4.2E-09 85.0 16.2 179 193-390 14-214 (725)
136 PF13191 AAA_16: AAA ATPase do 97.9 1.9E-05 4.1E-10 79.7 6.9 50 198-247 1-51 (185)
137 PRK14948 DNA polymerase III su 97.9 0.0012 2.7E-08 78.4 23.0 190 193-393 12-220 (620)
138 PTZ00454 26S protease regulato 97.9 0.00019 4.2E-09 80.6 15.1 175 193-389 141-351 (398)
139 PRK14971 DNA polymerase III su 97.9 0.00095 2.1E-08 79.4 21.7 179 193-391 13-218 (614)
140 PTZ00361 26 proteosome regulat 97.9 6.7E-05 1.4E-09 84.8 11.4 154 193-365 179-368 (438)
141 TIGR02880 cbbX_cfxQ probable R 97.9 0.00044 9.6E-09 74.5 16.7 128 222-364 60-208 (284)
142 TIGR03689 pup_AAA proteasome A 97.9 0.00023 5E-09 81.7 15.0 157 195-364 180-378 (512)
143 PRK14086 dnaA chromosomal repl 97.8 0.00051 1.1E-08 79.9 17.4 156 221-393 315-486 (617)
144 KOG0989 Replication factor C, 97.8 0.00012 2.6E-09 75.7 10.8 181 192-389 31-224 (346)
145 PRK06647 DNA polymerase III su 97.8 0.0012 2.6E-08 77.6 20.2 187 193-392 12-217 (563)
146 PRK07399 DNA polymerase III su 97.8 0.0015 3.2E-08 71.3 19.5 187 197-394 4-220 (314)
147 KOG1859 Leucine-rich repeat pr 97.8 3E-07 6.5E-12 103.8 -9.3 125 660-792 166-292 (1096)
148 PF08937 DUF1863: MTH538 TIR-l 97.8 3.3E-05 7.2E-10 72.7 5.7 88 27-119 1-106 (130)
149 CHL00095 clpC Clp protease ATP 97.8 0.00023 5E-09 88.4 14.6 165 176-362 161-352 (821)
150 PRK10865 protein disaggregatio 97.8 0.001 2.3E-08 82.5 20.0 168 176-364 160-354 (857)
151 PRK05563 DNA polymerase III su 97.8 0.00087 1.9E-08 79.1 18.4 186 193-391 12-216 (559)
152 KOG4579 Leucine-rich repeat (L 97.8 1.6E-06 3.4E-11 78.4 -3.4 103 708-812 30-133 (177)
153 KOG2120 SCF ubiquitin ligase, 97.7 1.2E-06 2.5E-11 89.3 -5.3 139 572-743 205-349 (419)
154 KOG2982 Uncharacterized conser 97.7 3.7E-06 8E-11 85.8 -1.8 182 576-792 70-262 (418)
155 PRK09376 rho transcription ter 97.7 7.2E-05 1.6E-09 81.5 7.9 87 221-309 170-269 (416)
156 CHL00181 cbbX CbbX; Provisiona 97.7 0.00084 1.8E-08 72.3 15.7 130 221-365 60-210 (287)
157 PF05673 DUF815: Protein of un 97.7 0.0016 3.5E-08 66.5 16.5 56 193-248 23-80 (249)
158 PRK05707 DNA polymerase III su 97.7 0.0012 2.5E-08 72.5 16.8 158 219-395 21-203 (328)
159 KOG1859 Leucine-rich repeat pr 97.7 6.8E-07 1.5E-11 101.0 -8.4 81 731-814 186-266 (1096)
160 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00053 1.1E-08 85.5 15.8 166 176-364 155-349 (852)
161 PRK08116 hypothetical protein; 97.7 0.00043 9.4E-09 73.8 12.6 102 221-334 115-221 (268)
162 KOG2120 SCF ubiquitin ligase, 97.7 9.2E-07 2E-11 90.1 -7.4 154 656-811 208-372 (419)
163 PRK07952 DNA replication prote 97.6 0.0013 2.9E-08 68.6 15.3 114 207-333 86-204 (244)
164 CHL00176 ftsH cell division pr 97.6 0.0008 1.7E-08 80.1 15.4 172 195-387 181-386 (638)
165 PRK14965 DNA polymerase III su 97.6 0.00097 2.1E-08 79.1 15.8 184 193-395 12-221 (576)
166 PRK11034 clpA ATP-dependent Cl 97.6 0.00084 1.8E-08 81.4 15.3 149 196-364 185-362 (758)
167 COG1222 RPT1 ATP-dependent 26S 97.6 0.001 2.2E-08 70.5 13.7 172 197-390 151-358 (406)
168 KOG2543 Origin recognition com 97.6 0.0013 2.8E-08 70.3 14.0 161 196-363 5-192 (438)
169 PRK08181 transposase; Validate 97.5 0.00046 9.9E-09 73.1 10.6 99 221-334 107-209 (269)
170 PF12799 LRR_4: Leucine Rich r 97.5 6.6E-05 1.4E-09 55.3 3.0 40 779-818 1-40 (44)
171 cd01128 rho_factor Transcripti 97.5 0.00019 4.1E-09 75.2 7.4 87 220-308 16-115 (249)
172 TIGR01241 FtsH_fam ATP-depende 97.5 0.00095 2E-08 78.3 13.6 174 195-389 53-260 (495)
173 COG0593 DnaA ATPase involved i 97.5 0.0021 4.6E-08 71.2 15.1 133 219-365 112-258 (408)
174 CHL00195 ycf46 Ycf46; Provisio 97.5 0.0015 3.2E-08 75.3 14.3 174 196-389 227-429 (489)
175 TIGR00602 rad24 checkpoint pro 97.5 0.00092 2E-08 79.0 12.5 54 191-244 78-134 (637)
176 PRK12377 putative replication 97.4 0.0011 2.3E-08 69.4 11.5 100 220-333 101-205 (248)
177 PRK10536 hypothetical protein; 97.4 0.0011 2.3E-08 68.7 10.6 131 196-336 54-215 (262)
178 COG1373 Predicted ATPase (AAA+ 97.4 0.0025 5.3E-08 72.1 14.6 161 205-394 25-191 (398)
179 PRK09183 transposase/IS protei 97.4 0.00057 1.2E-08 72.5 8.8 99 221-334 103-206 (259)
180 TIGR00767 rho transcription te 97.4 0.0005 1.1E-08 75.6 8.4 89 220-310 168-269 (415)
181 KOG2982 Uncharacterized conser 97.4 4.6E-05 1E-09 78.0 0.3 179 554-769 68-262 (418)
182 PF01695 IstB_IS21: IstB-like 97.3 0.00043 9.4E-09 68.9 6.9 73 220-307 47-119 (178)
183 KOG4579 Leucine-rich repeat (L 97.3 1.2E-05 2.6E-10 72.9 -3.7 65 731-796 76-140 (177)
184 PF00004 AAA: ATPase family as 97.3 0.0018 4E-08 61.0 11.0 23 223-245 1-23 (132)
185 COG3267 ExeA Type II secretory 97.3 0.0091 2E-07 60.9 16.1 175 218-397 49-247 (269)
186 KOG3665 ZYG-1-like serine/thre 97.3 7.5E-05 1.6E-09 89.5 1.3 111 656-769 146-263 (699)
187 KOG1644 U2-associated snRNP A' 97.3 0.00042 9.1E-09 67.5 5.9 80 731-810 63-148 (233)
188 PRK06526 transposase; Provisio 97.3 0.00062 1.3E-08 71.8 7.7 99 220-334 98-201 (254)
189 PRK08769 DNA polymerase III su 97.3 0.011 2.3E-07 64.4 17.3 166 206-395 13-208 (319)
190 TIGR01243 CDC48 AAA family ATP 97.3 0.0019 4.1E-08 79.6 12.9 172 196-389 177-381 (733)
191 KOG0991 Replication factor C, 97.2 0.0021 4.6E-08 63.8 9.7 53 191-245 21-73 (333)
192 TIGR01243 CDC48 AAA family ATP 97.2 0.0044 9.6E-08 76.4 15.2 173 196-389 452-657 (733)
193 PF08357 SEFIR: SEFIR domain; 97.2 0.00041 9E-09 67.3 4.7 64 28-91 2-70 (150)
194 PF05621 TniB: Bacterial TniB 97.2 0.011 2.4E-07 62.6 15.3 194 197-394 34-260 (302)
195 PF10443 RNA12: RNA12 protein; 97.2 0.13 2.8E-06 57.1 24.0 189 202-401 1-284 (431)
196 PRK08058 DNA polymerase III su 97.1 0.013 2.9E-07 64.6 16.8 144 198-362 6-180 (329)
197 TIGR02639 ClpA ATP-dependent C 97.1 0.015 3.2E-07 71.6 18.3 116 196-319 453-578 (731)
198 smart00382 AAA ATPases associa 97.1 0.00095 2.1E-08 63.5 6.5 34 221-254 3-36 (148)
199 PRK06921 hypothetical protein; 97.1 0.0011 2.4E-08 70.5 7.4 36 220-255 117-153 (266)
200 KOG3665 ZYG-1-like serine/thre 97.1 0.0002 4.3E-09 85.9 1.9 125 682-811 122-259 (699)
201 COG2607 Predicted ATPase (AAA+ 97.1 0.0079 1.7E-07 60.4 12.6 117 194-334 57-183 (287)
202 PRK06090 DNA polymerase III su 97.1 0.024 5.1E-07 61.7 17.5 161 206-395 12-201 (319)
203 KOG2227 Pre-initiation complex 97.1 0.011 2.3E-07 65.2 14.3 167 194-364 147-338 (529)
204 PRK07993 DNA polymerase III su 97.1 0.012 2.7E-07 64.7 15.2 161 206-392 11-201 (334)
205 PRK06871 DNA polymerase III su 97.0 0.018 4E-07 62.7 16.2 169 207-391 12-199 (325)
206 COG0542 clpA ATP-binding subun 97.0 0.0052 1.1E-07 73.1 12.4 115 197-321 491-620 (786)
207 KOG0731 AAA+-type ATPase conta 97.0 0.024 5.3E-07 67.1 17.6 177 195-391 309-520 (774)
208 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0039 8.4E-08 70.4 10.5 152 196-364 189-374 (802)
209 PF02562 PhoH: PhoH-like prote 97.0 0.0046 1E-07 62.3 10.1 128 202-336 5-158 (205)
210 KOG2228 Origin recognition com 97.0 0.01 2.2E-07 62.7 12.7 169 195-364 22-219 (408)
211 TIGR01425 SRP54_euk signal rec 97.0 0.021 4.6E-07 64.2 16.2 36 219-254 99-134 (429)
212 COG5238 RNA1 Ran GTPase-activa 97.0 9.3E-05 2E-09 74.8 -2.3 138 654-792 88-255 (388)
213 PLN00020 ribulose bisphosphate 96.9 0.017 3.7E-07 62.7 14.4 153 218-390 146-333 (413)
214 COG2812 DnaX DNA polymerase II 96.9 0.02 4.4E-07 65.6 15.8 191 193-390 12-215 (515)
215 PF13177 DNA_pol3_delta2: DNA 96.9 0.016 3.4E-07 56.9 13.1 138 201-352 1-162 (162)
216 KOG1644 U2-associated snRNP A' 96.9 0.0019 4.1E-08 63.1 6.3 59 657-715 63-123 (233)
217 KOG0730 AAA+-type ATPase [Post 96.9 0.012 2.6E-07 67.6 13.6 166 197-389 434-637 (693)
218 PRK11331 5-methylcytosine-spec 96.9 0.0018 3.8E-08 72.6 6.9 101 197-309 175-285 (459)
219 PRK10865 protein disaggregatio 96.9 0.0055 1.2E-07 76.2 12.0 114 196-318 567-694 (857)
220 TIGR02640 gas_vesic_GvpN gas v 96.9 0.022 4.8E-07 60.7 15.1 35 206-244 11-45 (262)
221 COG0466 Lon ATP-dependent Lon 96.9 0.0038 8.1E-08 72.3 9.3 156 197-364 323-508 (782)
222 PRK08939 primosomal protein Dn 96.9 0.0061 1.3E-07 66.2 10.6 100 219-333 155-260 (306)
223 TIGR00763 lon ATP-dependent pr 96.9 0.012 2.7E-07 72.7 14.7 52 197-248 320-375 (775)
224 PRK06835 DNA replication prote 96.9 0.0055 1.2E-07 67.0 10.2 100 221-333 184-288 (329)
225 KOG4341 F-box protein containi 96.9 0.00015 3.2E-09 77.9 -1.9 108 703-811 292-410 (483)
226 KOG1514 Origin recognition com 96.9 0.03 6.5E-07 64.8 16.2 167 195-364 394-589 (767)
227 PRK00771 signal recognition pa 96.8 0.057 1.2E-06 61.4 18.3 87 148-247 26-122 (437)
228 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0055 1.2E-07 75.9 10.7 115 196-319 565-693 (852)
229 PRK08118 topology modulation p 96.7 0.0018 3.9E-08 63.8 5.0 33 222-254 3-38 (167)
230 TIGR03346 chaperone_ClpB ATP-d 96.7 0.019 4.2E-07 71.7 15.1 114 196-318 564-691 (852)
231 COG0470 HolB ATPase involved i 96.7 0.016 3.4E-07 64.3 13.0 145 198-357 2-174 (325)
232 TIGR01650 PD_CobS cobaltochela 96.7 0.061 1.3E-06 58.2 16.6 53 192-248 40-92 (327)
233 KOG2739 Leucine-rich acidic nu 96.7 0.00074 1.6E-08 68.8 2.0 68 645-716 56-127 (260)
234 PRK06964 DNA polymerase III su 96.7 0.2 4.4E-06 55.1 21.0 90 295-394 131-224 (342)
235 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0047 1E-07 65.1 7.7 87 221-309 70-176 (274)
236 CHL00095 clpC Clp protease ATP 96.7 0.023 5E-07 70.9 14.9 119 196-319 508-636 (821)
237 KOG0735 AAA+-type ATPase [Post 96.7 0.036 7.8E-07 64.0 14.9 161 219-395 430-616 (952)
238 KOG4341 F-box protein containi 96.6 0.00018 3.9E-09 77.3 -3.1 229 575-811 188-435 (483)
239 KOG0741 AAA+-type ATPase [Post 96.6 0.01 2.2E-07 66.0 10.0 129 218-363 536-685 (744)
240 COG1484 DnaC DNA replication p 96.6 0.014 3.1E-07 61.6 11.1 74 219-306 104-177 (254)
241 PRK10787 DNA-binding ATP-depen 96.6 0.025 5.5E-07 69.4 14.4 159 197-364 322-506 (784)
242 KOG2739 Leucine-rich acidic nu 96.6 0.00088 1.9E-08 68.2 1.4 80 731-810 64-151 (260)
243 smart00763 AAA_PrkA PrkA AAA d 96.6 0.003 6.5E-08 68.9 5.5 51 196-246 50-104 (361)
244 COG1223 Predicted ATPase (AAA+ 96.5 0.021 4.6E-07 57.9 10.7 172 197-389 121-319 (368)
245 cd01120 RecA-like_NTPases RecA 96.5 0.018 3.9E-07 56.3 10.4 34 222-255 1-34 (165)
246 PRK04296 thymidine kinase; Pro 96.5 0.0076 1.6E-07 60.9 7.7 107 221-335 3-117 (190)
247 PRK11034 clpA ATP-dependent Cl 96.5 0.025 5.4E-07 68.9 13.4 112 196-319 457-582 (758)
248 PHA00729 NTP-binding motif con 96.5 0.011 2.4E-07 60.3 8.8 27 219-245 16-42 (226)
249 cd01393 recA_like RecA is a b 96.5 0.021 4.5E-07 59.6 11.3 48 208-255 7-60 (226)
250 PRK04132 replication factor C 96.5 0.058 1.3E-06 65.9 16.2 149 228-391 574-727 (846)
251 cd01131 PilT Pilus retraction 96.5 0.011 2.4E-07 60.1 8.9 109 221-337 2-112 (198)
252 PRK14974 cell division protein 96.5 0.047 1E-06 59.9 14.1 29 219-247 139-167 (336)
253 PF00448 SRP54: SRP54-type pro 96.5 0.022 4.8E-07 57.6 10.7 36 220-255 1-36 (196)
254 KOG0744 AAA+-type ATPase [Post 96.4 0.0091 2E-07 62.4 7.7 36 220-255 177-216 (423)
255 PRK08699 DNA polymerase III su 96.4 0.25 5.5E-06 54.2 19.6 86 296-391 113-202 (325)
256 COG5238 RNA1 Ran GTPase-activa 96.4 0.00024 5.3E-09 71.9 -3.6 208 572-813 53-314 (388)
257 PF04665 Pox_A32: Poxvirus A32 96.4 0.007 1.5E-07 62.5 6.9 34 222-255 15-48 (241)
258 PRK06696 uridine kinase; Valid 96.4 0.0059 1.3E-07 63.6 6.5 46 202-247 3-49 (223)
259 PRK10733 hflB ATP-dependent me 96.4 0.038 8.3E-07 66.7 14.3 126 221-364 186-335 (644)
260 COG0542 clpA ATP-binding subun 96.4 0.027 5.7E-07 67.3 12.3 151 195-363 168-345 (786)
261 PRK11889 flhF flagellar biosyn 96.4 0.079 1.7E-06 58.4 14.7 36 219-254 240-275 (436)
262 TIGR00959 ffh signal recogniti 96.4 0.062 1.3E-06 61.0 14.6 27 219-245 98-124 (428)
263 PF13207 AAA_17: AAA domain; P 96.4 0.003 6.4E-08 58.7 3.5 23 222-244 1-23 (121)
264 PF00158 Sigma54_activat: Sigm 96.4 0.0059 1.3E-07 60.1 5.7 44 199-242 1-44 (168)
265 PF14532 Sigma54_activ_2: Sigm 96.3 0.0038 8.2E-08 59.5 4.0 107 200-334 1-110 (138)
266 PRK12724 flagellar biosynthesi 96.3 0.1 2.2E-06 58.4 15.4 25 220-244 223-247 (432)
267 PRK09361 radB DNA repair and r 96.3 0.012 2.6E-07 61.4 8.1 48 208-255 11-58 (225)
268 PRK07667 uridine kinase; Provi 96.3 0.0094 2E-07 60.4 6.8 42 206-247 3-44 (193)
269 COG1618 Predicted nucleotide k 96.2 0.0048 1E-07 58.1 4.1 33 221-253 6-39 (179)
270 PRK10867 signal recognition pa 96.2 0.079 1.7E-06 60.2 14.5 29 219-247 99-127 (433)
271 KOG1970 Checkpoint RAD17-RFC c 96.2 0.1 2.2E-06 58.9 14.7 43 202-244 87-134 (634)
272 COG0464 SpoVK ATPases of the A 96.2 0.028 6E-07 66.3 11.1 150 197-365 242-424 (494)
273 cd01121 Sms Sms (bacterial rad 96.2 0.028 6E-07 62.7 10.4 49 207-255 69-117 (372)
274 TIGR02237 recomb_radB DNA repa 96.2 0.027 5.8E-07 58.0 9.7 44 212-255 4-47 (209)
275 PRK12608 transcription termina 96.1 0.027 5.8E-07 61.9 9.8 99 208-309 122-233 (380)
276 TIGR00064 ftsY signal recognit 96.1 0.024 5.3E-07 60.5 9.5 37 218-254 70-106 (272)
277 PRK05541 adenylylsulfate kinas 96.1 0.023 5.1E-07 56.6 8.9 37 219-255 6-42 (176)
278 cd01394 radB RadB. The archaea 96.0 0.02 4.4E-07 59.3 7.9 49 207-255 6-54 (218)
279 KOG0727 26S proteasome regulat 96.0 0.034 7.4E-07 56.0 8.8 52 197-248 155-217 (408)
280 TIGR02902 spore_lonB ATP-depen 96.0 0.048 1E-06 64.3 11.7 50 193-244 61-110 (531)
281 PF03215 Rad17: Rad17 cell cyc 96.0 0.079 1.7E-06 61.7 13.2 61 193-255 15-78 (519)
282 KOG0733 Nuclear AAA ATPase (VC 95.9 0.055 1.2E-06 61.5 11.2 128 220-365 545-693 (802)
283 PRK07261 topology modulation p 95.9 0.027 5.8E-07 55.8 8.0 23 222-244 2-24 (171)
284 PRK12337 2-phosphoglycerate ki 95.9 0.018 4E-07 64.7 7.3 27 218-244 253-279 (475)
285 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.11 2.3E-06 54.6 12.6 49 207-255 8-56 (237)
286 PF01583 APS_kinase: Adenylyls 95.8 0.014 3E-07 56.1 5.2 36 220-255 2-37 (156)
287 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.072 1.6E-06 51.4 10.1 113 221-335 3-139 (159)
288 PRK15455 PrkA family serine pr 95.8 0.012 2.6E-07 67.5 5.4 51 197-247 76-130 (644)
289 PRK11608 pspF phage shock prot 95.8 0.024 5.3E-07 62.5 7.8 46 197-242 6-51 (326)
290 TIGR01817 nifA Nif-specific re 95.8 0.15 3.2E-06 60.7 14.9 50 194-243 193-242 (534)
291 PRK06762 hypothetical protein; 95.8 0.042 9.1E-07 54.2 8.7 25 220-244 2-26 (166)
292 COG1066 Sms Predicted ATP-depe 95.7 0.064 1.4E-06 58.5 10.4 93 206-306 79-178 (456)
293 KOG0728 26S proteasome regulat 95.7 0.15 3.3E-06 51.5 12.0 143 201-364 151-331 (404)
294 cd01129 PulE-GspE PulE/GspE Th 95.7 0.041 8.9E-07 58.6 8.8 103 205-317 68-170 (264)
295 PTZ00494 tuzin-like protein; P 95.7 1.3 2.9E-05 49.1 19.8 204 149-363 302-543 (664)
296 KOG2035 Replication factor C, 95.7 0.71 1.5E-05 47.8 16.8 227 195-432 11-281 (351)
297 COG0488 Uup ATPase components 95.7 0.26 5.6E-06 57.6 15.8 60 288-350 449-511 (530)
298 TIGR02012 tigrfam_recA protein 95.6 0.039 8.5E-07 59.9 8.5 48 208-255 42-90 (321)
299 PRK06067 flagellar accessory p 95.6 0.074 1.6E-06 55.8 10.4 49 207-255 12-60 (234)
300 PRK09354 recA recombinase A; P 95.5 0.037 8.1E-07 60.5 7.8 49 207-255 46-95 (349)
301 PRK15429 formate hydrogenlyase 95.5 0.048 1E-06 66.9 9.7 49 196-244 375-423 (686)
302 PF13671 AAA_33: AAA domain; P 95.5 0.071 1.5E-06 50.9 9.0 24 222-245 1-24 (143)
303 cd01123 Rad51_DMC1_radA Rad51_ 95.5 0.055 1.2E-06 56.8 8.9 48 208-255 7-60 (235)
304 PRK05800 cobU adenosylcobinami 95.5 0.027 5.8E-07 55.6 6.1 23 222-244 3-25 (170)
305 TIGR00708 cobA cob(I)alamin ad 95.5 0.089 1.9E-06 51.5 9.5 113 221-334 6-140 (173)
306 KOG2004 Mitochondrial ATP-depe 95.4 0.018 3.8E-07 66.6 5.1 52 197-248 411-466 (906)
307 PRK11823 DNA repair protein Ra 95.4 0.082 1.8E-06 60.8 10.6 50 206-255 66-115 (446)
308 PF13238 AAA_18: AAA domain; P 95.4 0.013 2.8E-07 54.9 3.2 22 223-244 1-22 (129)
309 TIGR02974 phageshock_pspF psp 95.3 0.074 1.6E-06 58.7 9.6 45 199-243 1-45 (329)
310 TIGR00416 sms DNA repair prote 95.3 0.079 1.7E-06 61.0 10.1 50 206-255 80-129 (454)
311 KOG0729 26S proteasome regulat 95.3 0.039 8.4E-07 56.0 6.4 55 198-257 178-243 (435)
312 PF13604 AAA_30: AAA domain; P 95.3 0.17 3.6E-06 51.4 11.3 116 205-336 6-133 (196)
313 PRK12726 flagellar biosynthesi 95.3 0.53 1.1E-05 52.0 15.4 37 219-255 205-241 (407)
314 PRK04328 hypothetical protein; 95.3 0.19 4.2E-06 53.1 12.1 48 208-255 11-58 (249)
315 PRK12723 flagellar biosynthesi 95.2 0.3 6.4E-06 54.8 13.9 27 219-245 173-199 (388)
316 COG1875 NYN ribonuclease and A 95.2 0.18 4E-06 54.1 11.4 131 199-334 226-388 (436)
317 PF03969 AFG1_ATPase: AFG1-lik 95.2 0.069 1.5E-06 59.3 8.8 102 218-334 60-167 (362)
318 PF13306 LRR_5: Leucine rich r 95.2 0.084 1.8E-06 49.3 8.2 118 678-804 8-128 (129)
319 COG4608 AppF ABC-type oligopep 95.2 0.051 1.1E-06 56.5 7.1 118 220-340 39-176 (268)
320 cd00983 recA RecA is a bacter 95.2 0.087 1.9E-06 57.2 9.2 49 207-255 41-90 (325)
321 KOG0652 26S proteasome regulat 95.2 0.4 8.6E-06 48.8 13.0 164 196-380 170-372 (424)
322 PRK07132 DNA polymerase III su 95.2 1.6 3.5E-05 47.2 18.9 166 207-395 6-185 (299)
323 cd03238 ABC_UvrA The excision 95.1 0.1 2.2E-06 51.8 8.9 122 220-348 21-161 (176)
324 PF00485 PRK: Phosphoribulokin 95.1 0.017 3.8E-07 58.6 3.6 26 222-247 1-26 (194)
325 PRK05703 flhF flagellar biosyn 95.1 0.25 5.5E-06 56.4 13.2 36 220-255 221-258 (424)
326 PRK09270 nucleoside triphospha 95.1 0.032 6.9E-07 58.3 5.5 32 217-248 30-61 (229)
327 PF00910 RNA_helicase: RNA hel 95.1 0.014 3.1E-07 52.7 2.5 26 223-248 1-26 (107)
328 TIGR01420 pilT_fam pilus retra 95.0 0.052 1.1E-06 60.3 7.3 108 220-335 122-231 (343)
329 KOG1051 Chaperone HSP104 and r 95.0 0.44 9.5E-06 58.2 15.3 101 197-309 562-673 (898)
330 PTZ00301 uridine kinase; Provi 95.0 0.021 4.5E-07 58.4 3.8 29 220-248 3-31 (210)
331 PRK05022 anaerobic nitric oxid 95.0 0.1 2.2E-06 61.6 10.0 50 195-244 185-234 (509)
332 cd02027 APSK Adenosine 5'-phos 95.0 0.18 3.9E-06 48.6 10.1 25 222-246 1-25 (149)
333 PRK05986 cob(I)alamin adenolsy 95.0 0.082 1.8E-06 52.5 7.7 114 220-334 22-158 (191)
334 PRK14722 flhF flagellar biosyn 95.0 0.25 5.5E-06 54.8 12.4 83 220-306 137-225 (374)
335 TIGR00382 clpX endopeptidase C 95.0 0.12 2.6E-06 58.3 9.9 52 197-248 77-144 (413)
336 COG4088 Predicted nucleotide k 95.0 0.1 2.3E-06 51.3 8.1 32 221-252 2-33 (261)
337 TIGR03574 selen_PSTK L-seryl-t 95.0 0.072 1.6E-06 56.5 7.9 25 223-247 2-26 (249)
338 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.1 2.2E-06 52.3 8.7 23 222-244 1-23 (183)
339 PF08433 KTI12: Chromatin asso 95.0 0.07 1.5E-06 56.8 7.6 35 221-255 2-36 (270)
340 PF10137 TIR-like: Predicted n 94.9 0.056 1.2E-06 49.8 5.9 59 29-90 2-61 (125)
341 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.1 2.2E-06 50.0 8.1 103 220-338 26-131 (144)
342 PRK13531 regulatory ATPase Rav 94.9 0.046 9.9E-07 62.1 6.5 46 197-246 20-65 (498)
343 KOG0734 AAA+-type ATPase conta 94.9 0.14 3.1E-06 57.3 10.0 47 197-243 304-360 (752)
344 KOG0743 AAA+-type ATPase [Post 94.9 0.35 7.7E-06 53.7 12.9 150 220-399 235-413 (457)
345 KOG2123 Uncharacterized conser 94.9 0.0013 2.8E-08 67.1 -5.2 57 731-789 40-98 (388)
346 cd00544 CobU Adenosylcobinamid 94.9 0.32 6.9E-06 47.9 11.5 75 223-305 2-82 (169)
347 PRK05342 clpX ATP-dependent pr 94.8 0.061 1.3E-06 60.9 7.2 50 198-247 72-135 (412)
348 COG0572 Udk Uridine kinase [Nu 94.8 0.031 6.7E-07 56.4 4.3 30 218-247 6-35 (218)
349 cd02019 NK Nucleoside/nucleoti 94.8 0.024 5.2E-07 46.5 2.8 23 222-244 1-23 (69)
350 COG5635 Predicted NTPase (NACH 94.8 0.27 5.9E-06 61.5 13.4 223 222-445 224-480 (824)
351 KOG1969 DNA replication checkp 94.8 0.068 1.5E-06 62.2 7.3 75 218-309 324-400 (877)
352 PF07726 AAA_3: ATPase family 94.8 0.012 2.7E-07 53.9 1.2 29 223-251 2-30 (131)
353 PRK10416 signal recognition pa 94.8 0.11 2.5E-06 56.7 8.8 36 219-254 113-148 (318)
354 COG3854 SpoIIIAA ncharacterize 94.7 0.2 4.3E-06 50.3 9.4 108 220-332 137-251 (308)
355 cd01858 NGP_1 NGP-1. Autoanti 94.7 0.18 4E-06 49.1 9.5 42 201-242 82-124 (157)
356 PRK05480 uridine/cytidine kina 94.7 0.028 6.1E-07 57.8 3.9 27 218-244 4-30 (209)
357 KOG0739 AAA+-type ATPase [Post 94.7 0.3 6.6E-06 50.8 11.0 49 197-245 133-191 (439)
358 TIGR00150 HI0065_YjeE ATPase, 94.7 0.041 8.9E-07 51.4 4.5 40 205-244 7-46 (133)
359 PRK11388 DNA-binding transcrip 94.7 0.59 1.3E-05 57.0 15.8 48 196-243 324-371 (638)
360 PF00560 LRR_1: Leucine Rich R 94.7 0.015 3.2E-07 35.6 1.0 18 758-775 2-19 (22)
361 PRK04040 adenylate kinase; Pro 94.7 0.03 6.5E-07 56.3 3.8 25 221-245 3-27 (188)
362 COG0465 HflB ATP-dependent Zn 94.7 0.22 4.8E-06 58.1 11.2 173 195-391 148-357 (596)
363 PRK08233 hypothetical protein; 94.7 0.024 5.3E-07 56.8 3.2 26 220-245 3-28 (182)
364 cd03214 ABC_Iron-Siderophores_ 94.6 0.16 3.5E-06 50.8 8.9 115 220-337 25-161 (180)
365 KOG1947 Leucine rich repeat pr 94.6 0.0031 6.7E-08 74.2 -4.2 36 576-611 187-224 (482)
366 PF03308 ArgK: ArgK protein; 94.6 0.097 2.1E-06 54.1 7.2 41 207-247 16-56 (266)
367 PF00560 LRR_1: Leucine Rich R 94.5 0.018 4E-07 35.2 1.2 21 683-703 1-21 (22)
368 cd03223 ABCD_peroxisomal_ALDP 94.5 0.24 5.2E-06 48.8 9.8 122 220-348 27-160 (166)
369 KOG0651 26S proteasome regulat 94.5 0.15 3.2E-06 53.5 8.4 31 218-248 164-194 (388)
370 cd03247 ABCC_cytochrome_bd The 94.5 0.15 3.3E-06 50.8 8.6 123 221-349 29-170 (178)
371 KOG0736 Peroxisome assembly fa 94.5 1 2.3E-05 53.1 15.8 143 197-357 672-849 (953)
372 PRK03839 putative kinase; Prov 94.4 0.029 6.2E-07 56.2 3.1 24 222-245 2-25 (180)
373 cd03115 SRP The signal recogni 94.4 0.16 3.5E-06 50.4 8.5 33 222-254 2-34 (173)
374 PF07728 AAA_5: AAA domain (dy 94.4 0.04 8.7E-07 52.5 3.9 22 223-244 2-23 (139)
375 cd01122 GP4d_helicase GP4d_hel 94.4 0.33 7.1E-06 52.2 11.4 37 219-255 29-66 (271)
376 TIGR03600 phage_DnaB phage rep 94.4 1.1 2.3E-05 51.7 16.3 73 199-278 174-247 (421)
377 cd03228 ABCC_MRP_Like The MRP 94.4 0.23 5E-06 49.2 9.4 123 220-348 28-167 (171)
378 COG0467 RAD55 RecA-superfamily 94.4 0.11 2.3E-06 55.6 7.5 45 211-255 14-58 (260)
379 PRK00889 adenylylsulfate kinas 94.4 0.056 1.2E-06 53.8 5.0 36 219-254 3-38 (175)
380 COG1224 TIP49 DNA helicase TIP 94.4 0.13 2.7E-06 55.0 7.5 57 194-250 36-95 (450)
381 KOG2123 Uncharacterized conser 94.3 0.0022 4.7E-08 65.5 -5.2 101 657-762 18-123 (388)
382 PF00437 T2SE: Type II/IV secr 94.3 0.041 8.8E-07 59.2 4.2 127 197-334 104-232 (270)
383 PRK08506 replicative DNA helic 94.3 0.76 1.7E-05 53.4 14.8 73 199-278 172-244 (472)
384 COG0563 Adk Adenylate kinase a 94.3 0.093 2E-06 52.1 6.3 93 222-319 2-101 (178)
385 TIGR00235 udk uridine kinase. 94.3 0.046 9.9E-07 56.1 4.2 28 218-245 4-31 (207)
386 cd03216 ABC_Carb_Monos_I This 94.3 0.11 2.4E-06 51.0 6.7 112 221-338 27-146 (163)
387 cd01130 VirB11-like_ATPase Typ 94.3 0.045 9.8E-07 55.1 4.1 93 220-316 25-120 (186)
388 PRK06217 hypothetical protein; 94.2 0.16 3.4E-06 51.0 7.9 23 222-244 3-25 (183)
389 PRK00625 shikimate kinase; Pro 94.2 0.033 7.2E-07 55.0 3.0 24 222-245 2-25 (173)
390 KOG3928 Mitochondrial ribosome 94.2 0.64 1.4E-05 50.9 12.6 52 344-398 404-459 (461)
391 TIGR02858 spore_III_AA stage I 94.2 0.22 4.7E-06 53.0 9.2 112 219-336 110-231 (270)
392 COG0529 CysC Adenylylsulfate k 94.1 0.073 1.6E-06 51.2 4.8 37 218-254 21-57 (197)
393 TIGR00390 hslU ATP-dependent p 94.1 0.056 1.2E-06 60.1 4.7 52 197-248 12-75 (441)
394 PF07724 AAA_2: AAA domain (Cd 94.1 0.082 1.8E-06 52.2 5.4 41 220-261 3-44 (171)
395 PRK06547 hypothetical protein; 94.1 0.047 1E-06 54.0 3.7 27 218-244 13-39 (172)
396 PRK00131 aroK shikimate kinase 94.1 0.039 8.4E-07 54.8 3.2 25 220-244 4-28 (175)
397 cd03246 ABCC_Protease_Secretio 94.1 0.22 4.8E-06 49.4 8.5 120 221-348 29-168 (173)
398 cd01125 repA Hexameric Replica 94.1 0.58 1.3E-05 49.2 12.2 24 222-245 3-26 (239)
399 PF06068 TIP49: TIP49 C-termin 94.1 0.074 1.6E-06 57.7 5.3 59 195-253 22-83 (398)
400 TIGR03156 GTP_HflX GTP-binding 94.0 0.16 3.4E-06 56.6 8.1 178 43-242 19-211 (351)
401 cd02028 UMPK_like Uridine mono 94.0 0.06 1.3E-06 53.7 4.4 26 222-247 1-26 (179)
402 KOG0735 AAA+-type ATPase [Post 94.0 1.3 2.7E-05 51.9 15.0 173 197-390 667-871 (952)
403 COG0541 Ffh Signal recognition 94.0 3.8 8.3E-05 45.7 18.2 28 219-246 99-126 (451)
404 TIGR01360 aden_kin_iso1 adenyl 94.0 0.045 9.9E-07 55.1 3.4 26 219-244 2-27 (188)
405 PF10236 DAP3: Mitochondrial r 93.9 4 8.6E-05 44.6 18.6 48 345-392 258-306 (309)
406 TIGR02788 VirB11 P-type DNA tr 93.9 0.069 1.5E-06 58.4 5.0 108 220-335 144-254 (308)
407 PRK03846 adenylylsulfate kinas 93.9 0.083 1.8E-06 53.8 5.3 38 218-255 22-59 (198)
408 COG2842 Uncharacterized ATPase 93.9 0.58 1.3E-05 49.3 11.2 157 192-369 67-228 (297)
409 PRK12727 flagellar biosynthesi 93.8 0.1 2.2E-06 59.8 6.2 29 219-247 349-377 (559)
410 TIGR03499 FlhF flagellar biosy 93.8 0.21 4.6E-06 53.8 8.5 29 219-247 193-221 (282)
411 PRK13947 shikimate kinase; Pro 93.8 0.044 9.4E-07 54.4 2.9 25 222-246 3-27 (171)
412 PRK14528 adenylate kinase; Pro 93.8 0.26 5.7E-06 49.5 8.6 24 221-244 2-25 (186)
413 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.096 2.1E-06 55.7 5.7 38 218-255 34-71 (259)
414 cd03222 ABC_RNaseL_inhibitor T 93.8 0.22 4.7E-06 49.5 7.8 114 221-349 26-146 (177)
415 CHL00206 ycf2 Ycf2; Provisiona 93.8 0.7 1.5E-05 60.3 13.7 29 216-244 1626-1654(2281)
416 TIGR02524 dot_icm_DotB Dot/Icm 93.7 0.11 2.4E-06 57.7 6.2 95 220-316 134-232 (358)
417 cd04121 Rab40 Rab40 subfamily. 93.7 0.38 8.2E-06 48.5 9.6 22 221-242 7-28 (189)
418 COG0468 RecA RecA/RadA recombi 93.7 0.2 4.4E-06 53.1 7.7 48 209-256 49-96 (279)
419 KOG0726 26S proteasome regulat 93.7 0.064 1.4E-06 55.4 3.8 57 192-248 180-247 (440)
420 COG1428 Deoxynucleoside kinase 93.7 0.051 1.1E-06 54.1 3.0 26 220-245 4-29 (216)
421 cd00227 CPT Chloramphenicol (C 93.6 0.054 1.2E-06 53.9 3.2 25 221-245 3-27 (175)
422 COG1703 ArgK Putative periplas 93.6 0.13 2.8E-06 53.9 5.9 46 207-252 38-83 (323)
423 COG2884 FtsE Predicted ATPase 93.6 0.54 1.2E-05 46.1 9.6 52 288-341 147-204 (223)
424 PRK05201 hslU ATP-dependent pr 93.6 0.09 2E-06 58.6 5.0 52 197-248 15-78 (443)
425 PF00406 ADK: Adenylate kinase 93.5 0.17 3.7E-06 48.9 6.5 20 225-244 1-20 (151)
426 cd03240 ABC_Rad50 The catalyti 93.5 0.83 1.8E-05 46.6 11.8 59 289-349 132-196 (204)
427 PF13504 LRR_7: Leucine rich r 93.5 0.044 9.5E-07 31.1 1.3 16 780-795 2-17 (17)
428 PRK09280 F0F1 ATP synthase sub 93.5 0.21 4.6E-06 56.7 7.9 86 221-308 145-250 (463)
429 PF13481 AAA_25: AAA domain; P 93.4 0.22 4.8E-06 50.4 7.4 26 221-246 33-58 (193)
430 cd00267 ABC_ATPase ABC (ATP-bi 93.4 0.15 3.2E-06 49.7 5.8 120 221-348 26-153 (157)
431 COG1102 Cmk Cytidylate kinase 93.4 0.063 1.4E-06 50.8 2.9 24 222-245 2-25 (179)
432 cd03232 ABC_PDR_domain2 The pl 93.4 0.41 9E-06 48.4 9.2 23 220-242 33-55 (192)
433 COG0003 ArsA Predicted ATPase 93.4 0.13 2.8E-06 55.9 5.8 36 220-255 2-37 (322)
434 PRK05439 pantothenate kinase; 93.4 0.11 2.4E-06 56.2 5.1 30 217-246 83-112 (311)
435 cd02024 NRK1 Nicotinamide ribo 93.3 0.053 1.2E-06 54.2 2.5 23 222-244 1-23 (187)
436 COG4618 ArpD ABC-type protease 93.3 0.45 9.8E-06 53.5 9.7 22 221-242 363-384 (580)
437 COG1121 ZnuC ABC-type Mn/Zn tr 93.3 0.22 4.8E-06 51.8 7.0 50 288-339 149-204 (254)
438 PF03205 MobB: Molybdopterin g 93.3 0.11 2.4E-06 49.4 4.5 35 221-255 1-36 (140)
439 PRK10820 DNA-binding transcrip 93.3 0.39 8.4E-06 56.7 10.0 50 194-243 201-250 (520)
440 TIGR02782 TrbB_P P-type conjug 93.2 0.21 4.5E-06 54.3 7.1 87 221-315 133-223 (299)
441 PRK00279 adk adenylate kinase; 93.2 0.27 5.9E-06 50.8 7.7 23 222-244 2-24 (215)
442 PF03266 NTPase_1: NTPase; In 93.2 0.072 1.6E-06 52.4 3.2 24 223-246 2-25 (168)
443 PRK12597 F0F1 ATP synthase sub 93.2 0.21 4.6E-06 56.9 7.3 85 221-308 144-249 (461)
444 KOG0738 AAA+-type ATPase [Post 93.2 0.21 4.6E-06 53.9 6.8 73 171-246 189-271 (491)
445 TIGR00455 apsK adenylylsulfate 93.1 0.55 1.2E-05 47.1 9.6 28 219-246 17-44 (184)
446 PRK13765 ATP-dependent proteas 93.1 0.13 2.8E-06 61.3 5.7 60 193-256 27-87 (637)
447 cd03217 ABC_FeS_Assembly ABC-t 93.1 0.32 6.8E-06 49.6 7.9 24 220-243 26-49 (200)
448 TIGR03881 KaiC_arch_4 KaiC dom 93.1 0.19 4E-06 52.6 6.3 48 208-255 8-55 (229)
449 PRK15453 phosphoribulokinase; 93.0 0.13 2.9E-06 54.1 5.1 29 218-246 3-31 (290)
450 cd01857 HSR1_MMR1 HSR1/MMR1. 93.0 0.53 1.1E-05 44.9 8.9 51 71-123 3-53 (141)
451 KOG0730 AAA+-type ATPase [Post 93.0 0.76 1.6E-05 53.4 11.3 173 197-389 184-386 (693)
452 cd02020 CMPK Cytidine monophos 93.0 0.066 1.4E-06 51.4 2.7 23 222-244 1-23 (147)
453 COG2274 SunT ABC-type bacterio 93.0 0.24 5.2E-06 60.0 7.9 22 221-242 500-521 (709)
454 PF08298 AAA_PrkA: PrkA AAA do 93.0 0.16 3.5E-06 55.1 5.7 52 196-247 60-115 (358)
455 PRK05973 replicative DNA helic 93.0 0.26 5.7E-06 51.1 7.1 38 218-255 62-99 (237)
456 cd00984 DnaB_C DnaB helicase C 93.0 0.86 1.9E-05 48.0 11.4 53 218-276 11-64 (242)
457 cd01124 KaiC KaiC is a circadi 93.0 0.19 4E-06 50.6 6.0 33 223-255 2-34 (187)
458 TIGR01039 atpD ATP synthase, F 93.0 0.25 5.3E-06 56.0 7.4 86 221-308 144-249 (461)
459 COG3910 Predicted ATPase [Gene 93.0 1.3 2.7E-05 43.4 11.0 60 288-349 139-202 (233)
460 cd02025 PanK Pantothenate kina 93.0 0.069 1.5E-06 55.2 2.8 24 222-245 1-24 (220)
461 cd03281 ABC_MSH5_euk MutS5 hom 92.9 0.54 1.2E-05 48.4 9.4 23 220-242 29-51 (213)
462 PRK14723 flhF flagellar biosyn 92.9 1.6 3.5E-05 52.8 14.5 26 220-245 185-210 (767)
463 cd02023 UMPK Uridine monophosp 92.9 0.065 1.4E-06 54.6 2.6 23 222-244 1-23 (198)
464 PTZ00088 adenylate kinase 1; P 92.9 0.26 5.6E-06 51.2 6.9 22 223-244 9-30 (229)
465 KOG1532 GTPase XAB1, interacts 92.9 0.13 2.9E-06 52.7 4.5 40 218-258 17-56 (366)
466 COG1136 SalX ABC-type antimicr 92.9 0.63 1.4E-05 47.7 9.5 59 288-349 152-216 (226)
467 TIGR03575 selen_PSTK_euk L-ser 92.8 0.44 9.6E-06 52.3 8.9 23 223-245 2-24 (340)
468 PHA02774 E1; Provisional 92.8 0.44 9.6E-06 55.1 9.1 46 206-254 421-466 (613)
469 cd00464 SK Shikimate kinase (S 92.8 0.082 1.8E-06 51.2 3.0 22 223-244 2-23 (154)
470 cd02021 GntK Gluconate kinase 92.8 0.073 1.6E-06 51.4 2.6 22 222-243 1-22 (150)
471 PRK14529 adenylate kinase; Pro 92.7 0.48 1E-05 48.8 8.6 93 223-317 3-98 (223)
472 COG1936 Predicted nucleotide k 92.7 0.078 1.7E-06 51.0 2.6 20 222-241 2-21 (180)
473 PF06309 Torsin: Torsin; Inte 92.7 0.47 1E-05 43.5 7.5 38 206-243 38-76 (127)
474 cd03278 ABC_SMC_barmotin Barmo 92.7 1.2 2.7E-05 45.1 11.5 21 222-242 24-44 (197)
475 cd00071 GMPK Guanosine monopho 92.7 0.067 1.4E-06 50.8 2.1 26 222-247 1-26 (137)
476 PRK10463 hydrogenase nickel in 92.7 0.18 4E-06 53.6 5.6 44 208-253 94-137 (290)
477 cd03289 ABCC_CFTR2 The CFTR su 92.7 0.57 1.2E-05 50.3 9.5 24 221-244 31-54 (275)
478 PRK10751 molybdopterin-guanine 92.7 0.12 2.7E-06 50.7 4.0 29 219-247 5-33 (173)
479 TIGR02322 phosphon_PhnN phosph 92.7 0.087 1.9E-06 52.7 3.1 25 221-245 2-26 (179)
480 PRK13948 shikimate kinase; Pro 92.7 0.085 1.8E-06 52.6 2.9 27 219-245 9-35 (182)
481 cd03230 ABC_DR_subfamily_A Thi 92.7 0.34 7.5E-06 48.0 7.3 111 220-338 26-159 (173)
482 COG3640 CooC CO dehydrogenase 92.7 0.17 3.7E-06 51.2 4.9 35 222-256 2-36 (255)
483 PRK11174 cysteine/glutathione 92.7 0.33 7.2E-06 58.6 8.6 24 221-244 377-400 (588)
484 cd03369 ABCC_NFT1 Domain 2 of 92.7 1.3 2.8E-05 45.4 11.8 23 220-242 34-56 (207)
485 PF13306 LRR_5: Leucine rich r 92.6 0.34 7.4E-06 45.2 6.9 119 654-781 8-128 (129)
486 PRK10923 glnG nitrogen regulat 92.6 0.22 4.8E-06 58.3 6.9 47 197-243 138-184 (469)
487 PRK09435 membrane ATPase/prote 92.6 0.27 5.8E-06 53.9 6.9 40 208-247 44-83 (332)
488 cd01135 V_A-ATPase_B V/A-type 92.6 0.27 5.9E-06 51.8 6.6 86 221-309 70-179 (276)
489 PRK13949 shikimate kinase; Pro 92.6 0.086 1.9E-06 52.1 2.8 24 222-245 3-26 (169)
490 TIGR01069 mutS2 MutS2 family p 92.6 0.16 3.5E-06 62.3 5.7 24 220-243 322-345 (771)
491 TIGR02525 plasmid_TraJ plasmid 92.5 0.34 7.4E-06 54.0 7.7 106 221-332 150-258 (372)
492 TIGR02533 type_II_gspE general 92.5 0.41 9E-06 55.6 8.7 107 200-316 224-331 (486)
493 PF00625 Guanylate_kin: Guanyl 92.5 0.1 2.2E-06 52.4 3.2 35 220-254 2-36 (183)
494 PHA02244 ATPase-like protein 92.5 0.14 3E-06 56.2 4.4 46 196-245 95-144 (383)
495 PRK12339 2-phosphoglycerate ki 92.5 0.11 2.4E-06 52.5 3.5 25 220-244 3-27 (197)
496 PRK07276 DNA polymerase III su 92.5 6.6 0.00014 42.2 17.0 66 295-361 103-172 (290)
497 PRK13946 shikimate kinase; Pro 92.4 0.089 1.9E-06 52.9 2.8 24 221-244 11-34 (184)
498 PRK14738 gmk guanylate kinase; 92.4 0.11 2.4E-06 53.2 3.5 29 215-243 8-36 (206)
499 PRK13900 type IV secretion sys 92.4 0.14 3.1E-06 56.2 4.5 92 220-315 160-254 (332)
500 COG2019 AdkA Archaeal adenylat 92.4 0.13 2.8E-06 49.0 3.5 25 220-244 4-28 (189)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.4e-123 Score=1177.38 Aligned_cols=869 Identities=32% Similarity=0.532 Sum_probs=701.5
Q ss_pred cccccCCCCCCCCcccEEEcCccccccCchHHHHHHHHhhCCCceEEeCCCCCCccchHHHHHHhhhcceeeeeeccCcc
Q 002125 13 MASSSSSSPRNSNKYGVFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASAISIIIFSERYA 92 (963)
Q Consensus 13 ~~~~~~~~~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~ 92 (963)
||+|||| ++.|+||||+||||+|+|++|++||+++|+++||.+|+|+++++|+.|.+++.+||++|+++|||||++||
T Consensus 1 ~~~~~~~--~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya 78 (1153)
T PLN03210 1 MASSSSS--SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYA 78 (1153)
T ss_pred CCCCCCC--CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence 5555543 36799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHhhhcCCcEEEeEeeeccCcccccccccchhhHhhhcCCch-hhhhhHHHHHHHhccccCCCCCCCc
Q 002125 93 SSGWCLDELSKILECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRYP-EKMHRWANALTEAANLSGFDSDVIR 171 (963)
Q Consensus 93 ~s~~c~~El~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~-~~~~~w~~al~~~~~~~g~~~~~~~ 171 (963)
+|+||++||++|++|++..+++|+||||+|||++||+|+|.|++||.+++.+.. +++++||+||++||+++||++.++.
T Consensus 79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~ 158 (1153)
T PLN03210 79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWP 158 (1153)
T ss_pred cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCC
Confidence 999999999999999999999999999999999999999999999999988765 8999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcccccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCce
Q 002125 172 PESKLVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGS 251 (963)
Q Consensus 172 ~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 251 (963)
+|+++|++|+++|.+++..+++.+.+++|||+++++++.++|..+.+++++|+||||||+||||||+++|+++..+|++.
T Consensus 159 ~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~ 238 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSS 238 (1153)
T ss_pred CHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeE
Confidence 99999999999999999988888899999999999999999987788899999999999999999999999999999999
Q ss_pred EEEEec--chh---hc-----c-CCHHHHHHHHHHhhhcCCCC--CCHHHHHHHHcCCceEEEEcCCCCHHHHHHHHHhc
Q 002125 252 YFAQNV--REA---EE-----T-GGIKDLQKELLSKLLNDRNV--WNIESQLNRLARKKFLIVFDDVTHPRQIESLIRRL 318 (963)
Q Consensus 252 ~~~~~~--~~~---~~-----~-~~~~~l~~~ll~~l~~~~~~--~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l 318 (963)
+|+... ... .. . .....++++++.++...... .....++++++++|+||||||||+.++|+.+....
T Consensus 239 vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~ 318 (1153)
T PLN03210 239 VFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQT 318 (1153)
T ss_pred EEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhC
Confidence 998642 111 00 0 11235667777777655433 34578899999999999999999999999999888
Q ss_pred cCCCCCceEEEEeCCchhhhcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhh
Q 002125 319 DRLASGSRVIITTRDKQVLKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHH 398 (963)
Q Consensus 319 ~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~ 398 (963)
.++++||+||||||+++++..++..++|+|+.|+.+||++||+++||+...+++++.+++++|+++|+|+|||++++|+.
T Consensus 319 ~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~ 398 (1153)
T PLN03210 319 QWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSY 398 (1153)
T ss_pred ccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 88899999999999999998888889999999999999999999999988777788999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCCh-hhHHHHHhhhcccCccChhHHHHHHhhcCCChhhhHHhhhcc
Q 002125 399 LCGRSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDD-PQKNVFLDIACFLEGEHRDEVTSFFDASGFQAKIELSVLEGK 477 (963)
Q Consensus 399 L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~ 477 (963)
|++++.++|+.+++++++..+.+|..+|++||++|++ .+|.||+++||||.+.+.+.+..++..+++.++.+++.|+++
T Consensus 399 L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~k 478 (1153)
T PLN03210 399 LRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDK 478 (1153)
T ss_pred HcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhc
Confidence 9999999999999999988888999999999999986 589999999999999999999888988898888999999999
Q ss_pred cCceeecCEEEEchhHHHHhhhhhcccCCCCCCcccccccchhhhhhhccccccccc-ccccCC--cccccccCCCcccc
Q 002125 478 SLITCFYNYIRMHDLIRDMGREIVRNESIDHPGERSRLWYHEDIYKVLKNNTCESLM-SLPISI--PFKDLVNFPSVTSC 554 (963)
Q Consensus 478 sLi~~~~~~~~mHdlv~~~a~~i~~~e~~~~~~~~~rl~~~~~~~~~l~~~~~~~~i-~i~l~~--~~~~~~~~~~f~~~ 554 (963)
||++...+++.|||++|+||++++++++ .+|++++++|.++|++++++.++|+..+ +|.++. .....+...+| .
T Consensus 479 sLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF--~ 555 (1153)
T PLN03210 479 SLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF--K 555 (1153)
T ss_pred CCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHH--h
Confidence 9999988899999999999999999987 7899999999999999999999999998 887773 33455667788 8
Q ss_pred cceeeeEEecCCc----------cCCCccccCCC-CcEEeecCC---------------------CCccccccccCCCCC
Q 002125 555 HVYTLELVKVGIK----------ELPSSIECLSN-LKKLYIVDC---------------------SKLESISSSIFKLKS 602 (963)
Q Consensus 555 ~l~~L~~l~~~~~----------~lp~~~~~L~~-L~~L~L~~~---------------------~~~~~lp~~~~~L~~ 602 (963)
+|.+|++|.+... .+|..+..+|+ |++|+|.++ +.+..+|.++..+++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~ 635 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTG 635 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCC
Confidence 8999988877322 35555555543 555555432 235566777777888
Q ss_pred ccEEeCcCCcccccc------CCCCccccCCCCcccc-------ccccc-cccccCcCCCcCCccccCCCCCCeeecccc
Q 002125 603 LQSIEISNCSILKRF------LEIPSCNIDGGIGIER-------LASCK-LVLEKCSSLQSLPSSLCMFKSLTSLEIIDC 668 (963)
Q Consensus 603 L~~L~Ls~n~~l~~~------~~l~~~~l~~~~~l~~-------l~~L~-l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~ 668 (963)
|++|+|++|..++.+ .++..+.+.+|..+.. +..|. |.+.+|+.++.+|..+ ++++|++|++++|
T Consensus 636 Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 888888877655543 2334466777765544 33444 7788888888888766 5888888888888
Q ss_pred cccccCCcccCCCCCCcEEEecCccccc----------------------------------------------------
Q 002125 669 QNFMMLPYELGNLKALEMLIVDGTAIRE---------------------------------------------------- 696 (963)
Q Consensus 669 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~---------------------------------------------------- 696 (963)
..++.+|... ++|+.|++++|.++.
T Consensus 715 ~~L~~~p~~~---~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 715 SRLKSFPDIS---TNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred CCcccccccc---CCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence 7766666432 234444444444444
Q ss_pred --cCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcc
Q 002125 697 --VPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPES 774 (963)
Q Consensus 697 --lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~ 774 (963)
+|.+++++++|+.|++++|..++.+|..+ . +++|+.|++++|.....+|.. .++|+.|+|++|.++.+|.+
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~---L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTGI-N---LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCCC-C---ccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHH
Confidence 44445555555555555555555555443 1 455555555555555544432 34677777777777778888
Q ss_pred cCCCCCCCEEECcCC-CCcccCccccCCCCCCEEEeccCCCCCCceecCCcchhhhHhhCchhhHHH-------------
Q 002125 775 LGQLSSVKNLVLTNN-NLKRLPESLNQLSSLEYLQLHLRSPRKLTSLNLSVNLRNYLKLDPNELSEI------------- 840 (963)
Q Consensus 775 l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~~~~~~L~~L~l~~n~~~~~~l~~n~l~~~------------- 840 (963)
+..+++|+.|+|++| +++.+|..+..+++|+.|++++ |++|+.++++.+......+..|..+..
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~--C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~ 942 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD--CGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFN 942 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC--CcccccccCCCCchhhhhhcccccccCCchhccccccccC
Confidence 888888888888875 7777887777888888888877 888877665432221111111110000
Q ss_pred -Hhcc-ccccccceeeeecCCCCCCCcccccCCceEE-EeCCCCCccCCcceeeEEEEEEEecc
Q 002125 841 -VKDG-WMKQSFAKSKYFPGNEIPKWFRYQSMGSSVT-LKMPPADFLNNKIVVGFAFCIVVAFP 901 (963)
Q Consensus 841 -~~~~-~~~~~~~~~~~~~g~~iP~w~~~~~~~~~~~-~~l~~~~~~~~~~~~g~~~~~v~~~~ 901 (963)
.... ...+.......+||.++|.||.|+..|.+++ +.+|+.|. +.. +.||++|+|+++.
T Consensus 943 L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~-~~~f~~c~v~~~~ 1004 (1153)
T PLN03210 943 LDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQP-FFRFRACAVVDSE 1004 (1153)
T ss_pred CCchhhhcccccceEEECCCccCchhccCCcccceeeeeccCCccc-CCC-ccceEEEEEEecC
Confidence 0000 1112233467899999999999999999998 99988876 444 8899999999874
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-57 Score=539.33 Aligned_cols=472 Identities=25% Similarity=0.339 Sum_probs=365.0
Q ss_pred ccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH---HhccCCceEEEEecchhhccCCHHHHHHHHHHh
Q 002125 200 VGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK---ISRHFEGSYFAQNVREAEETGGIKDLQKELLSK 276 (963)
Q Consensus 200 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 276 (963)
||.++.++++...|..++. .+++|+||||+||||||+.++++ +..+|+.++|+. +|+.+....++++++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999999986543 99999999999999999999983 789999999998 67789999999999998
Q ss_pred hhcCCCC---CC----HHHHHHHHcCCceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchhhhc-CCcceEEEe
Q 002125 277 LLNDRNV---WN----IESQLNRLARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVLKN-CRARQIFRM 348 (963)
Q Consensus 277 l~~~~~~---~~----~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~-~~~~~~~~l 348 (963)
++..... .. ...+.+.|.+||++|||||||+..+|+.+..+++....||+|++|||++.|+.. +++...+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 8775444 11 126788899999999999999999999999998887889999999999999988 788889999
Q ss_pred ccCCHHHHHHHHHHhhcCCCC-CCCcHHHHHHHHHHHhcCCchhHHHhhhhcCCC-CHHHHHHHHHHhhcC-----C--C
Q 002125 349 KELEDADAHKLFCQCAFGGDH-PDASHIELTDKAIKYAQGVPLALKVLGHHLCGR-SKEEWESAMRKLEVI-----P--D 419 (963)
Q Consensus 349 ~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~~-~~~~w~~~l~~l~~~-----~--~ 419 (963)
+.|+.+|||.||++.+|.... ..+..+++|++++++|+|+|||+.++|+.++.+ +..+|+.+.+.+... + .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 999999999999999987633 334589999999999999999999999999985 677999999987654 1 3
Q ss_pred hhHHHHHHHHhhCCChhhHHHHHhhhcccCcc--ChhHHHHHHhhcCCC------------hhhhHHhhhcccCceeec-
Q 002125 420 KEIQEVLKISYDSLDDPQKNVFLDIACFLEGE--HRDEVTSFFDASGFQ------------AKIELSVLEGKSLITCFY- 484 (963)
Q Consensus 420 ~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~------------~~~~l~~L~~~sLi~~~~- 484 (963)
+.+..++..||+.||++.|.||+|||.||+++ +.+.++.+|+++|+. +..++.+|++++|+....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 57889999999999988999999999999999 467899999999964 356799999999998864
Q ss_pred ----CEEEEchhHHHHhhhhhcccCCCCCCcccccccchhhhhhhccccccccc-ccccCCcccccccCCCcccccceee
Q 002125 485 ----NYIRMHDLIRDMGREIVRNESIDHPGERSRLWYHEDIYKVLKNNTCESLM-SLPISIPFKDLVNFPSVTSCHVYTL 559 (963)
Q Consensus 485 ----~~~~mHdlv~~~a~~i~~~e~~~~~~~~~rl~~~~~~~~~l~~~~~~~~i-~i~l~~~~~~~~~~~~f~~~~l~~L 559 (963)
.++.|||+|||||..++.+.+......... ......+ ..+......+ .+.+..+....+. ......+++.|
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~--~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~-~~~~~~~L~tL 550 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEENQIVS--DGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIA-GSSENPKLRTL 550 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccceEEE--CCcCccc-cccccchhheeEEEEeccchhhcc-CCCCCCccceE
Confidence 689999999999999998543211110000 0000000 0011111111 2222211111111 11111233333
Q ss_pred eEEecC--CccCCC-ccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccc
Q 002125 560 ELVKVG--IKELPS-SIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLAS 636 (963)
Q Consensus 560 ~~l~~~--~~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~ 636 (963)
-+.... ...++. .|..+|.|++|||++|...+.+|.++++|-+|++|+|+++.
T Consensus 551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~------------------------ 606 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG------------------------ 606 (889)
T ss_pred EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC------------------------
Confidence 333332 234444 47889999999999999999999999999999999999853
Q ss_pred cccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcccc---ccCccccCCCCCcEEEcc
Q 002125 637 CKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIR---EVPKSLNQLALLFRLKLK 713 (963)
Q Consensus 637 L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~L~ 713 (963)
+..+|.++.+|..|.+|++..+.....+|.....|++|++|.+...... ..-..+.+|.+|+.|...
T Consensus 607 ----------I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 607 ----------ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ----------ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 4478999999999999999988888778877778999999988775532 112234566666666554
Q ss_pred CC
Q 002125 714 NC 715 (963)
Q Consensus 714 ~~ 715 (963)
..
T Consensus 677 ~~ 678 (889)
T KOG4658|consen 677 IS 678 (889)
T ss_pred cc
Confidence 33
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=322.93 Aligned_cols=154 Identities=34% Similarity=0.585 Sum_probs=140.5
Q ss_pred CCCcccEEEcCccccccCchHHHHHHHHhhCCCceEEeC-CCCCCccchHHHHHHhhhcceeeeeeccCccchhhhHHHH
Q 002125 23 NSNKYGVFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDEL 101 (963)
Q Consensus 23 ~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~~El 101 (963)
...+|||||||+|+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++|++|.||++||
T Consensus 23 ~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL 102 (187)
T PLN03194 23 SAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHEL 102 (187)
T ss_pred CCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHH
Confidence 345899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcEEEeEeeeccCcccccc-cccchhhHhhhcCCchhhhhhHHHHHHHhccccCCCCCC-CchhhHHHHH
Q 002125 102 SKILECKHDYGQIVIPVFCRVDPSHVRRQ-TGTFGDYFSKLGKRYPEKMHRWANALTEAANLSGFDSDV-IRPESKLVEE 179 (963)
Q Consensus 102 ~~~~~~~~~~~~~v~pvf~~v~p~~vr~~-~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~~e~~~i~~ 179 (963)
++|++|+ ++|+||||+|+|++||+| .|.+ ..+++++||+||+++|+++|+++.. .++|+++|++
T Consensus 103 ~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~ 168 (187)
T PLN03194 103 ALIMESK----KRVIPIFCDVKPSQLRVVDNGTC----------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTM 168 (187)
T ss_pred HHHHHcC----CEEEEEEecCCHHHhhccccCCC----------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHH
Confidence 9999874 479999999999999997 4331 2389999999999999999987653 3789999999
Q ss_pred HHHHHHhhhcc
Q 002125 180 IANEILERLEE 190 (963)
Q Consensus 180 i~~~v~~~l~~ 190 (963)
|++.|.++|..
T Consensus 169 iv~~v~k~l~~ 179 (187)
T PLN03194 169 ASDAVIKNLIE 179 (187)
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.3e-37 Score=334.16 Aligned_cols=263 Identities=29% Similarity=0.471 Sum_probs=207.9
Q ss_pred chhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH--HhccCCceEEEEecchhhccCCHHHHHHHHHHhhhc
Q 002125 202 VEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK--ISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLN 279 (963)
Q Consensus 202 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 279 (963)
||+++++|.+.|....++.++|+|+||||+||||||.+++++ +..+|+.++|+.. +.......+..+++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~----~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSL----SKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEE----ES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccc----ccccccccccccccccccc
Confidence 789999999999876688999999999999999999999987 8899999999973 3344557888888888877
Q ss_pred CCC----CCC----HHHHHHHHcCCceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchhhhcCCc-ceEEEecc
Q 002125 280 DRN----VWN----IESQLNRLARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRA-RQIFRMKE 350 (963)
Q Consensus 280 ~~~----~~~----~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~-~~~~~l~~ 350 (963)
... ..+ .+.+.+.|+++++||||||||+...|+.+...++....|++||||||+..++..+.. ...+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 632 122 347888899999999999999999999888777777789999999999988876554 67999999
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCcHHHHHHHHHHHhcCCchhHHHhhhhcCC-CCHHHHHHHHHHhhcC------CChhH
Q 002125 351 LEDADAHKLFCQCAFGGD-HPDASHIELTDKAIKYAQGVPLALKVLGHHLCG-RSKEEWESAMRKLEVI------PDKEI 422 (963)
Q Consensus 351 L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~-~~~~~w~~~l~~l~~~------~~~~i 422 (963)
|+.+||++||.+.++... .......+.+++|++.|+|+||||+++|++++. .+..+|+.+++++... ....+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997655 333445678999999999999999999999954 2567899988876543 24679
Q ss_pred HHHHHHHhhCCChhhHHHHHhhhcccCccC--hhHHHHHHhhcCCChh
Q 002125 423 QEVLKISYDSLDDPQKNVFLDIACFLEGEH--RDEVTSFFDASGFQAK 468 (963)
Q Consensus 423 ~~~l~~sy~~L~~~~k~~fl~la~f~~~~~--~~~l~~~~~~~~~~~~ 468 (963)
..++..||+.|+++.|.||++||+||.++. .+.++++|.++|++..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999874 7899999999987643
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=5.6e-24 Score=271.30 Aligned_cols=222 Identities=26% Similarity=0.290 Sum_probs=104.5
Q ss_pred cccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcccc-ccCccccCCCCCcEEEccCCCC
Q 002125 639 LVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIR-EVPKSLNQLALLFRLKLKNCSE 717 (963)
Q Consensus 639 l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~~~~ 717 (963)
|++.+|.-...+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+. .+|..++++++|+.|++++|..
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 333333333344444445555555555555544455555555555555555555444 3444445555555555554444
Q ss_pred CCCCCccccc---------------------ccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCc-ccCccc
Q 002125 718 LDGISSSIFS---------------------LCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMR-EVPESL 775 (963)
Q Consensus 718 l~~lp~~~~~---------------------l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l 775 (963)
.+.+|..+.. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++ .+|..+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 4444444333 001444444444444444444444444444444444444444 344444
Q ss_pred CCCCCCCEEECcCCCCc-ccCccccCCCCCCEEEeccCC-----------CCCCceecCCcchh--------------hh
Q 002125 776 GQLSSVKNLVLTNNNLK-RLPESLNQLSSLEYLQLHLRS-----------PRKLTSLNLSVNLR--------------NY 829 (963)
Q Consensus 776 ~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~-----------~~~L~~L~l~~n~~--------------~~ 829 (963)
+.+++|+.|+|++|+++ .+|..+..+++|+.|+++.|+ |++|+.|+++.|.. ..
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence 44555555555555443 344444444555555544322 34455555544422 12
Q ss_pred HhhCchhhHHHHhccccccccceeeeecCCC
Q 002125 830 LKLDPNELSEIVKDGWMKQSFAKSKYFPGNE 860 (963)
Q Consensus 830 ~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~ 860 (963)
+++++|.+++..+..+.....+..+.+.+|.
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCce
Confidence 2445566655544444444445556666654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.7e-23 Score=266.76 Aligned_cols=216 Identities=24% Similarity=0.289 Sum_probs=118.1
Q ss_pred cCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcccc-ccCccccCCCCCcEEEccCCCCCCCCCccccc
Q 002125 649 SLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIR-EVPKSLNQLALLFRLKLKNCSELDGISSSIFS 727 (963)
Q Consensus 649 ~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~ 727 (963)
.+|..+.++++|++|++++|.+.+.+|..+.++++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|..+..
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 34444444444444444444444444444444444444444444444 34444444455555555554444444444333
Q ss_pred ccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCc-ccCcccCCCCCCCEEECcCCCCcc-cCccccCCCCCC
Q 002125 728 LCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMR-EVPESLGQLSSVKNLVLTNNNLKR-LPESLNQLSSLE 805 (963)
Q Consensus 728 l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~ 805 (963)
+++|+.|++++|.+.+.+|..++.+++|+.|++++|+++ .+|..+..+++|+.|+|++|+++. +|..+..+++|+
T Consensus 379 ---~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 379 ---SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred ---cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 445555555555555555555666666666666666665 455666666666666666666653 444556666677
Q ss_pred EEEeccCCC----------CCCceecCCcchhh--------------hHhhCchhhHHHHhccccccccceeeeecCCCC
Q 002125 806 YLQLHLRSP----------RKLTSLNLSVNLRN--------------YLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 806 ~L~L~~~~~----------~~L~~L~l~~n~~~--------------~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~i 861 (963)
.|+|++|.. ++|+.|++++|... .++++.|.+++..|..+.....+..+.+.+|.+
T Consensus 456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred EEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 776665432 34666666665431 124566666666666555556666677777643
Q ss_pred ----CCCccc
Q 002125 862 ----PKWFRY 867 (963)
Q Consensus 862 ----P~w~~~ 867 (963)
|.+|..
T Consensus 536 ~~~~p~~~~~ 545 (968)
T PLN00113 536 SGQIPASFSE 545 (968)
T ss_pred cccCChhHhC
Confidence 555543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=7.1e-23 Score=221.02 Aligned_cols=284 Identities=21% Similarity=0.223 Sum_probs=169.6
Q ss_pred cccCCcccccccCCCcccccceeeeEEecCCc---cCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCc
Q 002125 536 LPISIPFKDLVNFPSVTSCHVYTLELVKVGIK---ELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCS 612 (963)
Q Consensus 536 i~l~~~~~~~~~~~~f~~~~l~~L~~l~~~~~---~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~ 612 (963)
+.++.+...++++..| .++.+|+.+++..+ .+|....-..||+.|+|.+|-....-.+.+..++.|+.||||.|.
T Consensus 83 LdlsnNkl~~id~~~f--~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFF--YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeccccccccCcHHHH--hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 3344455555666666 66666666666543 445555555567777776643322223455556666666666654
Q ss_pred cccc----cCC---CCccccCC----------CCccccccccccccccCcCCCcCCcc-ccCCCCCCeeecccccccccC
Q 002125 613 ILKR----FLE---IPSCNIDG----------GIGIERLASCKLVLEKCSSLQSLPSS-LCMFKSLTSLEIIDCQNFMML 674 (963)
Q Consensus 613 ~l~~----~~~---l~~~~l~~----------~~~l~~l~~L~l~l~~~~~l~~lP~~-~~~l~~L~~L~L~~~~~~~~~ 674 (963)
+..- |+. +..+++.+ ..++..|-.|+|+- +.+..+|.. |.+|++|+.|+|..|.+.-.-
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr---NrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR---NRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc---CcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 3221 110 11111111 11222222233332 334455543 555888888888877654443
Q ss_pred CcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccC
Q 002125 675 PYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELG 753 (963)
Q Consensus 675 p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~ 753 (963)
-..|.+|++|+.|.|..|.|..+.++ |..+.++++|+|..|+....-..++++ |++|+.|++++|.+...-++.+.
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg---Lt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG---LTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc---cchhhhhccchhhhheeecchhh
Confidence 45677777777777777777777665 667788888888877554444445555 78888888888888777777777
Q ss_pred CCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCcccCcc-ccCCCCCCEEEec--------------cCCCCCC
Q 002125 754 NLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRLPES-LNQLSSLEYLQLH--------------LRSPRKL 817 (963)
Q Consensus 754 ~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~--------------~~~~~~L 817 (963)
..++|+.|+|++|+|+.+++ +|..|+.|+.|+|++|.++.|-+. |..+++|+.|||+ ++.+++|
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 88888888888888887753 466666677777777766666533 5566666666664 2334555
Q ss_pred ceecCCcchh
Q 002125 818 TSLNLSVNLR 827 (963)
Q Consensus 818 ~~L~l~~n~~ 827 (963)
++|.|.+|.+
T Consensus 395 rkL~l~gNql 404 (873)
T KOG4194|consen 395 RKLRLTGNQL 404 (873)
T ss_pred hheeecCcee
Confidence 5555555533
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=1.2e-21 Score=212.50 Aligned_cols=248 Identities=24% Similarity=0.343 Sum_probs=183.3
Q ss_pred CCccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccC
Q 002125 565 GIKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKC 644 (963)
Q Consensus 565 ~~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~ 644 (963)
++..+|.+...++.+++|.|.. +.+..+|+.++.|.+|++|.+++|+....+.++ +.|..|+++.+..++.
T Consensus 20 sg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGEL--------s~Lp~LRsv~~R~N~L 90 (1255)
T KOG0444|consen 20 SGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQLISVHGEL--------SDLPRLRSVIVRDNNL 90 (1255)
T ss_pred CCCcCchhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhh--------ccchhhHHHhhhcccc
Confidence 4556777777788888888866 667778888888888888888877654322111 1122222222222222
Q ss_pred cCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCc
Q 002125 645 SSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISS 723 (963)
Q Consensus 645 ~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~ 723 (963)
++ ..+|..+..|..|..|+||+|+ +...|..+..-+++-.|+|++|+|..+|.+ +-+|+.|-.|+|++| .+..+|+
T Consensus 91 Kn-sGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPP 167 (1255)
T KOG0444|consen 91 KN-SGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPP 167 (1255)
T ss_pred cc-CCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCH
Confidence 22 3578888889999999999976 567888888888999999999999999987 568888999999987 6788888
Q ss_pred ccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCc--ccCcccCCCCCCCEEECcCCCCcccCccccCC
Q 002125 724 SIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMR--EVPESLGQLSSVKNLVLTNNNLKRLPESLNQL 801 (963)
Q Consensus 724 ~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l 801 (963)
.+.. +..|++|.|++|.+...--..+..|++|+.|.+++++-+ .+|.++..+.+|..+|||.|++..+|+++-++
T Consensus 168 Q~RR---L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l 244 (1255)
T KOG0444|consen 168 QIRR---LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL 244 (1255)
T ss_pred HHHH---HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhh
Confidence 8776 778888889888765433334455778888888887654 78888888888888888888888888888888
Q ss_pred CCCCEEEeccCCCC----------CCceecCCcchh
Q 002125 802 SSLEYLQLHLRSPR----------KLTSLNLSVNLR 827 (963)
Q Consensus 802 ~~L~~L~L~~~~~~----------~L~~L~l~~n~~ 827 (963)
++|+.|+|++|... +|++|+||.|.+
T Consensus 245 ~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred hhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence 88888888877654 466777887766
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=3e-20 Score=200.97 Aligned_cols=296 Identities=21% Similarity=0.223 Sum_probs=170.5
Q ss_pred eEEecCCccCC----CccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccc-------cCCCCccccCCC
Q 002125 560 ELVKVGIKELP----SSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKR-------FLEIPSCNIDGG 628 (963)
Q Consensus 560 ~~l~~~~~~lp----~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~-------~~~l~~~~l~~~ 628 (963)
+.|+++++.+. ..|.++++|+.+++.. +.+..+|.......+|+.|+|.+|.+... ++.+..++++..
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34666665554 3688999999999987 66888998777778899999999975331 111111111100
Q ss_pred ----------CccccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcccccc-
Q 002125 629 ----------IGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREV- 697 (963)
Q Consensus 629 ----------~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l- 697 (963)
..-.++.+|.|..+..+.++. ..|.++.+|.+|.|+.|.+...-+..|.+|++|+.|+|..|.|..+
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~--~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLET--GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hhhcccCCCCCCCCCceEEeecccccccccc--ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 000112222222222222111 1233344444444444444433334444444444444444444433
Q ss_pred CccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc-CcccC
Q 002125 698 PKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV-PESLG 776 (963)
Q Consensus 698 p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~ 776 (963)
-..|..|++|+.|.|..|....--...+.. +.++++|+|..|++...-..++.+|++|+.|+|++|.|..+ +++..
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~---l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYG---LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceee---ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 122444555555555444322111222223 66777788887777666666778888888888888888765 45667
Q ss_pred CCCCCCEEECcCCCCcccCc-cccCCCCCCEEEeccCC-----------CCCCceecCCcchhh----------------
Q 002125 777 QLSSVKNLVLTNNNLKRLPE-SLNQLSSLEYLQLHLRS-----------PRKLTSLNLSVNLRN---------------- 828 (963)
Q Consensus 777 ~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~-----------~~~L~~L~l~~n~~~---------------- 828 (963)
..++|+.|+|++|+|+++|+ ++..|+.|+.|+|+.|. +++|+.|+|..|-+.
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 77888888888888888874 47788888888887654 356777777777441
Q ss_pred -hHhhCchhhHHHHhccccccccceeeeecCCCC
Q 002125 829 -YLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 829 -~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~i 861 (963)
-+.+.+|++..+....|.....+..+.+.+|.|
T Consensus 395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 113456666666555555555555566666554
No 10
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.80 E-value=2.5e-20 Score=178.99 Aligned_cols=129 Identities=33% Similarity=0.553 Sum_probs=113.4
Q ss_pred EEEcCccccccCchHHHHHHHHhhC--CCceEEeC-CCCCCccchHHHHHHhhhcceeeeeeccCccchhhhHHHHHHHH
Q 002125 29 VFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDELSKIL 105 (963)
Q Consensus 29 vfis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~~El~~~~ 105 (963)
|||||++.|.+..|+++|..+|++. |+++|+++ |+.+|..+.+++.++|++|+++|+|+|++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999555688999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HhhhcCC--cEEEeEeeeccCcccc-cccccchhhHhhhcCCch-----hhhhhHHHHHH
Q 002125 106 ECKHDYG--QIVIPVFCRVDPSHVR-RQTGTFGDYFSKLGKRYP-----EKMHRWANALT 157 (963)
Q Consensus 106 ~~~~~~~--~~v~pvf~~v~p~~vr-~~~~~~~~~~~~~~~~~~-----~~~~~w~~al~ 157 (963)
++....+ ++|+||||+|.+++++ .+.+.|...+........ .+...|+++..
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9996655 7999999999999999 799999988887765544 46778887764
No 11
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.76 E-value=1.3e-18 Score=167.71 Aligned_cols=134 Identities=40% Similarity=0.665 Sum_probs=113.9
Q ss_pred cccEEEcCcc-ccccCchHHHHHHHHhhCCCceEEeCCCCCCccchHHHHHHhhhcceeeeeeccCccchhhhHHHHHHH
Q 002125 26 KYGVFLSFRG-EDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDELSKI 104 (963)
Q Consensus 26 ~~dvfis~~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~~El~~~ 104 (963)
.|||||||++ +|..+.|+.+|..+|...|+.+|.|+....|.... +|.++|++|+++|+|+|++|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 56668999999999999999999998443333333 999999999999999999999999999999999
Q ss_pred HHhhhc-CCcEEEeEeeeccCcccccccccchhhHhhhcCCchhhh--hhHHHHHHHhc
Q 002125 105 LECKHD-YGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRYPEKM--HRWANALTEAA 160 (963)
Q Consensus 105 ~~~~~~-~~~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~--~~w~~al~~~~ 160 (963)
+++... ..+.|+||+|+..|..+..+.+.+..++..+..+..+.. +.|++++..++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 998854 567999999999999999999999999988755554333 58988876654
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=3.7e-20 Score=200.98 Aligned_cols=223 Identities=24% Similarity=0.335 Sum_probs=165.0
Q ss_pred ccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccc-cccccCc-CCCcCC
Q 002125 574 ECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCK-LVLEKCS-SLQSLP 651 (963)
Q Consensus 574 ~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~-l~l~~~~-~l~~lP 651 (963)
-+|..|-+|+|++ +.++.+|+.+..|.+|++|+|++|..... . ...|..+.+|. |.+++.. .+..+|
T Consensus 147 inLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf-------Q---LrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 147 INLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHF-------Q---LRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred HhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHH-------H---HhcCccchhhhhhhcccccchhhcCC
Confidence 3444455555544 33445555555555555555555542110 0 01111222222 3333322 344688
Q ss_pred ccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCC
Q 002125 652 SSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMF 731 (963)
Q Consensus 652 ~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l 731 (963)
.++..|.+|..+++|.|+ +..+|+.+-++++|+.|+|++|.|+++....+...+|++|+|+.| .+..+|..+++ +
T Consensus 216 tsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcK---L 290 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCK---L 290 (1255)
T ss_pred CchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhh---h
Confidence 888889999999998865 567888889999999999999999988888888889999999998 66788988877 8
Q ss_pred CCCcEEEccCCCCC-CcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEec
Q 002125 732 KSLTSLEIIDCQNF-MILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLH 810 (963)
Q Consensus 732 ~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 810 (963)
+.|+.|.+.+|.+. .-+|..++.+.+|+.+...+|++.-+|++++.+..|+.|.|+.|.+.++|+.|.-|+.|+.|+|.
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeecc
Confidence 88888888888654 44888999999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q 002125 811 LR 812 (963)
Q Consensus 811 ~~ 812 (963)
.|
T Consensus 371 eN 372 (1255)
T KOG0444|consen 371 EN 372 (1255)
T ss_pred CC
Confidence 63
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=4e-20 Score=191.91 Aligned_cols=230 Identities=25% Similarity=0.346 Sum_probs=134.7
Q ss_pred ccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcC
Q 002125 567 KELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSS 646 (963)
Q Consensus 567 ~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~ 646 (963)
..+.+.+.+|..|.+|++++ +...++|.+++.+..++.|+.++|+..+ +|.- + .++.++.+ ++.+ -+.
T Consensus 58 ~~l~~dl~nL~~l~vl~~~~-n~l~~lp~aig~l~~l~~l~vs~n~ls~----lp~~-i---~s~~~l~~--l~~s-~n~ 125 (565)
T KOG0472|consen 58 EVLREDLKNLACLTVLNVHD-NKLSQLPAAIGELEALKSLNVSHNKLSE----LPEQ-I---GSLISLVK--LDCS-SNE 125 (565)
T ss_pred hhccHhhhcccceeEEEecc-chhhhCCHHHHHHHHHHHhhcccchHhh----ccHH-H---hhhhhhhh--hhcc-ccc
Confidence 34445556666666666666 3344556666666666666666654321 0000 0 00000000 0000 012
Q ss_pred CCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccc
Q 002125 647 LQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIF 726 (963)
Q Consensus 647 l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 726 (963)
+..+|++++.+..|..|+..+|+ ...+|..+.++.+|..|++.+|+++.+|...-+++.|++|+...| .++.+|..++
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg 203 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELG 203 (565)
T ss_pred eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhc
Confidence 33566666666666666666554 344566666666666677777777666666555666777766655 5666666665
Q ss_pred cccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccC-CCCCCCEEECcCCCCcccCccccCCCCCC
Q 002125 727 SLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLG-QLSSVKNLVLTNNNLKRLPESLNQLSSLE 805 (963)
Q Consensus 727 ~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 805 (963)
. +.+|..|++..|.+. .+| .|.++..|++|+++.|.+..+|.... ++++|..|||.+|+++++|..+..+.+|+
T Consensus 204 ~---l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 204 G---LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred c---hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 5 666666666666543 344 56666777777777777776666544 67777777777777777777777777777
Q ss_pred EEEeccCCCC
Q 002125 806 YLQLHLRSPR 815 (963)
Q Consensus 806 ~L~L~~~~~~ 815 (963)
+||+++|...
T Consensus 279 rLDlSNN~is 288 (565)
T KOG0472|consen 279 RLDLSNNDIS 288 (565)
T ss_pred hhcccCCccc
Confidence 7777765543
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=5.3e-20 Score=190.97 Aligned_cols=244 Identities=25% Similarity=0.352 Sum_probs=193.7
Q ss_pred ccceeeeEEec---CCccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 554 CHVYTLELVKV---GIKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 554 ~~l~~L~~l~~---~~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
.++..|.++.+ ...++|..++.+..++.|+.+. +.+..+|+.++.+.+|+.|+.++|.... ++. .
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n~~~e----l~~-------~ 132 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSNELKE----LPD-------S 132 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccccceee----cCc-------h
Confidence 44445555554 4457888999999999999988 5577889999999999999999886433 211 1
Q ss_pred cccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEE
Q 002125 631 IERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRL 710 (963)
Q Consensus 631 l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L 710 (963)
+..+..+.-.....+++.++|..+.++.+|..|++.+|......|..+. |+.|++|+...|-++.+|..++.+.+|..|
T Consensus 133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELL 211 (565)
T ss_pred HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence 1111122222233467789999999999999999999886655554444 999999999999999999999999999999
Q ss_pred EccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCC
Q 002125 711 KLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNN 790 (963)
Q Consensus 711 ~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~ 790 (963)
+|..| .+..+| .|.+ +..|.+|+++.|.+.....+...++++|..|||.+|+++++|+.+.-+.+|++||+|+|.
T Consensus 212 yL~~N-ki~~lP-ef~g---cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 212 YLRRN-KIRFLP-EFPG---CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred Hhhhc-ccccCC-CCCc---cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc
Confidence 99998 556777 4444 889999999888765543344569999999999999999999999999999999999999
Q ss_pred CcccCccccCCCCCCEEEeccCCCCC
Q 002125 791 LKRLPESLNQLSSLEYLQLHLRSPRK 816 (963)
Q Consensus 791 l~~lp~~l~~l~~L~~L~L~~~~~~~ 816 (963)
++.+|-+++++ .|+.|.+.+|.++.
T Consensus 287 is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 287 ISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred cccCCcccccc-eeeehhhcCCchHH
Confidence 99999999999 99999998876543
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=8.3e-19 Score=200.10 Aligned_cols=208 Identities=22% Similarity=0.274 Sum_probs=132.6
Q ss_pred CCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccc-
Q 002125 650 LPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSL- 728 (963)
Q Consensus 650 lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l- 728 (963)
+|++++.+.+|+.|+..+|.+ ..+|..+..+++|+.|.+..|.++.+|.....+++|++|+|..| .+..+|..+...
T Consensus 256 lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~ 333 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVL 333 (1081)
T ss_pred chHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhh
Confidence 344444444444444444433 33343444444444444444445555565666778888888877 455555533210
Q ss_pred ----------------------cCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcc-cCCCCCCCEEE
Q 002125 729 ----------------------CMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPES-LGQLSSVKNLV 785 (963)
Q Consensus 729 ----------------------~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~ 785 (963)
..+..|+.|.+.+|.+....-+.+.++.+|+.|+|++|.+.++|.+ +.++..|+.|+
T Consensus 334 ~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 334 NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN 413 (1081)
T ss_pred hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence 1134466777777777666555678889999999999999999875 78889999999
Q ss_pred CcCCCCcccCccccCCCCCCEEEeccCCCCCCceecCCcchhhhHhhCchhhHHHHhccccccccceeeeecCCC
Q 002125 786 LTNNNLKRLPESLNQLSSLEYLQLHLRSPRKLTSLNLSVNLRNYLKLDPNELSEIVKDGWMKQSFAKSKYFPGNE 860 (963)
Q Consensus 786 Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~~~L~~L~l~~n~~~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~ 860 (963)
||+|+|+.||..+.++..|++|....|.+..+-.+. ..+.+.|+|++.|+|+...-..-.+...++++.+.||.
T Consensus 414 LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~-~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 414 LSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELA-QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhHHHHhhhhhHHHhhcCCceeechhhh-hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 999999999988999999999888766543322221 11223566777777776644333333667788888885
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.65 E-value=1.6e-15 Score=193.97 Aligned_cols=231 Identities=23% Similarity=0.389 Sum_probs=176.8
Q ss_pred ccceeeeEEecCC----ccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCcccccc------CCCCcc
Q 002125 554 CHVYTLELVKVGI----KELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRF------LEIPSC 623 (963)
Q Consensus 554 ~~l~~L~~l~~~~----~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~------~~l~~~ 623 (963)
..+.+|+.++++. ..+| .+..+++|+.|++++|..+..+|.+++++++|+.|++++|..++.+ ..+..+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L 709 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRL 709 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEE
Confidence 4566777777754 3345 4777888888888888888888888888888999999888766543 234446
Q ss_pred ccCCCCcccccc----ccc-cccccCcCCCcCCccc------------------------------cCCCCCCeeecccc
Q 002125 624 NIDGGIGIERLA----SCK-LVLEKCSSLQSLPSSL------------------------------CMFKSLTSLEIIDC 668 (963)
Q Consensus 624 ~l~~~~~l~~l~----~L~-l~l~~~~~l~~lP~~~------------------------------~~l~~L~~L~L~~~ 668 (963)
.+.||..+..+. +|+ +.+.+ +.+..+|..+ ...++|+.|++++|
T Consensus 710 ~Lsgc~~L~~~p~~~~nL~~L~L~~-n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 710 NLSGCSRLKSFPDISTNISWLDLDE-TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred eCCCCCCccccccccCCcCeeecCC-CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 677776554432 222 22222 2244444322 11357888999999
Q ss_pred cccccCCcccCCCCCCcEEEecCc-cccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCc
Q 002125 669 QNFMMLPYELGNLKALEMLIVDGT-AIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMI 747 (963)
Q Consensus 669 ~~~~~~p~~~~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~ 747 (963)
...+.+|..++++++|+.|++++| .++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|++++|.+. .
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~------~~nL~~L~Ls~n~i~-~ 860 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI------STNISDLNLSRTGIE-E 860 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc------ccccCEeECCCCCCc-c
Confidence 889999999999999999999986 577899876 7999999999999988887763 468999999998765 5
Q ss_pred CccccCCCCCccEEEcCCC-CCcccCcccCCCCCCCEEECcCC-CCccc
Q 002125 748 LPDELGNLKALETLIIDGT-AMREVPESLGQLSSVKNLVLTNN-NLKRL 794 (963)
Q Consensus 748 ~p~~l~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~Ls~n-~l~~l 794 (963)
+|..+..+++|+.|+|++| ++..+|..+..+++|+.|++++| +|+.+
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 8889999999999999984 78899999999999999999998 56544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=2.2e-15 Score=179.94 Aligned_cols=200 Identities=21% Similarity=0.325 Sum_probs=110.5
Q ss_pred cceeeeEEecCCccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccc
Q 002125 555 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERL 634 (963)
Q Consensus 555 ~l~~L~~l~~~~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l 634 (963)
+...|++..+....+|..+. ++|+.|+|++| .+..+|..+. .+|++|++++|.+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~Lt-------------------- 233 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLT-------------------- 233 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccc--------------------
Confidence 34455555555667776553 46999999885 4667887664 58999999987531
Q ss_pred cccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccC
Q 002125 635 ASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKN 714 (963)
Q Consensus 635 ~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~ 714 (963)
.+|..+ ..+|+.|+|++|.+. .+|..+. ++|+.|++++|+++.+|..+. ++|+.|++++
T Consensus 234 --------------sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 234 --------------SIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred --------------cCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC
Confidence 233322 134555566555533 4444432 345566666666555555432 3556666655
Q ss_pred CCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCccc
Q 002125 715 CSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRL 794 (963)
Q Consensus 715 ~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 794 (963)
| .+..+|..+ .++|+.|++++|.+.. +|..+ .++|+.|++++|.++.+|..+. ++|+.|+|++|+|+.+
T Consensus 293 N-~Lt~LP~~l-----p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~L 361 (754)
T PRK15370 293 N-SIRTLPAHL-----PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVL 361 (754)
T ss_pred C-ccccCcccc-----hhhHHHHHhcCCcccc-CCccc--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcC
Confidence 5 333444332 1245555555555443 33322 2455566666666655555442 4566666666666555
Q ss_pred CccccCCCCCCEEEeccCC
Q 002125 795 PESLNQLSSLEYLQLHLRS 813 (963)
Q Consensus 795 p~~l~~l~~L~~L~L~~~~ 813 (963)
|..+ .++|+.|+|++|+
T Consensus 362 P~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 362 PETL--PPTITTLDVSRNA 378 (754)
T ss_pred Chhh--cCCcCEEECCCCc
Confidence 5443 2455666665543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=8e-18 Score=155.25 Aligned_cols=146 Identities=24% Similarity=0.425 Sum_probs=87.8
Q ss_pred cCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCC-CCCCccccc
Q 002125 649 SLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSEL-DGISSSIFS 727 (963)
Q Consensus 649 ~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l-~~lp~~~~~ 727 (963)
.+|+.+..+.+|+.|++++|+ .+.+|..++.|++|+.|+++-|.+..+|.+|+.++.|+.|+|..|+.. ..+|..++.
T Consensus 47 ~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred ecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhH
Confidence 456666666666666666554 345566666666666666666666666666666666666666655432 345555554
Q ss_pred ccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCcccc
Q 002125 728 LCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLN 799 (963)
Q Consensus 728 l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~ 799 (963)
++.|..|.+++|.+ ..+|..++++++|+.|.+.+|.+-++|..++.++.|++|++.+|+++.+|..++
T Consensus 126 ---m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 126 ---MTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred ---HHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhh
Confidence 55555566665553 335555666666666666666666666666666666666666666666664444
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.5e-17 Score=153.50 Aligned_cols=163 Identities=25% Similarity=0.396 Sum_probs=146.1
Q ss_pred CCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCccc
Q 002125 646 SLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSI 725 (963)
Q Consensus 646 ~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~ 725 (963)
++..+|. +.++.+.+.|.|++|. +..+|..+..+.+|+.|++.+|+++++|.++..+++|+.|+++-| .+..+|..+
T Consensus 22 sf~~~~g-Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgf 98 (264)
T KOG0617|consen 22 SFEELPG-LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGF 98 (264)
T ss_pred cHhhccc-ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCcccc
Confidence 3445555 3348889999999987 456777999999999999999999999999999999999999987 667889988
Q ss_pred ccccCCCCCcEEEccCCCCCC-cCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCC
Q 002125 726 FSLCMFKSLTSLEIIDCQNFM-ILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSL 804 (963)
Q Consensus 726 ~~l~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 804 (963)
++ ++.|+.|++++|++.. .+|..|..++.|+.|+|++|.+.-+|..++.+++|+.|.+..|.+-++|..++.++.|
T Consensus 99 gs---~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 99 GS---FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRL 175 (264)
T ss_pred CC---CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence 77 9999999999998764 5888899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeccCCC
Q 002125 805 EYLQLHLRSP 814 (963)
Q Consensus 805 ~~L~L~~~~~ 814 (963)
+.|.+.+|.+
T Consensus 176 relhiqgnrl 185 (264)
T KOG0617|consen 176 RELHIQGNRL 185 (264)
T ss_pred HHHhccccee
Confidence 9999998664
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=8.8e-15 Score=173.49 Aligned_cols=211 Identities=23% Similarity=0.258 Sum_probs=100.1
Q ss_pred cceeeeEEecCCccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccc
Q 002125 555 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERL 634 (963)
Q Consensus 555 ~l~~L~~l~~~~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l 634 (963)
++..|.+.++....+|. .+++|++|++++| .+..+|.. .++|+.|+|++|.+. .++.++ ..|
T Consensus 223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L~-~Lp~lp----------~~L 284 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPLT-HLPALP----------SGL 284 (788)
T ss_pred CCCEEEccCCcCCCCCC---CCCCCcEEEecCC-ccCcccCc---ccccceeeccCCchh-hhhhch----------hhc
Confidence 33444433333444453 3467888888775 44556642 357778888877532 121111 112
Q ss_pred cccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccC
Q 002125 635 ASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKN 714 (963)
Q Consensus 635 ~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~ 714 (963)
..|. +.+ +.++.+|.. +++|+.|++++|.+.+ +|... .+|+.|++++|.++.+|.. ..+|+.|+|++
T Consensus 285 ~~L~--Ls~-N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~ 351 (788)
T PRK15387 285 CKLW--IFG-NQLTSLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSD 351 (788)
T ss_pred CEEE--CcC-Ccccccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccccccc---ccccceEecCC
Confidence 2222 222 234445542 3566777777665443 34322 2355555666666555531 23556666665
Q ss_pred CCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCccc
Q 002125 715 CSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRL 794 (963)
Q Consensus 715 ~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 794 (963)
| .+..+|.. ..+|+.|++++|.+.. +|.. +.+|+.|++++|.++.+|... ++|+.|++++|.|+.+
T Consensus 352 N-~Ls~LP~l------p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssI 417 (788)
T PRK15387 352 N-QLASLPTL------PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSL 417 (788)
T ss_pred C-ccCCCCCC------Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCC
Confidence 5 33344432 2244455555544332 3322 234555555555555554322 3455555555555555
Q ss_pred CccccCCCCCCEEEeccCC
Q 002125 795 PESLNQLSSLEYLQLHLRS 813 (963)
Q Consensus 795 p~~l~~l~~L~~L~L~~~~ 813 (963)
|... .+|+.|++++|+
T Consensus 418 P~l~---~~L~~L~Ls~Nq 433 (788)
T PRK15387 418 PMLP---SGLLSLSVYRNQ 433 (788)
T ss_pred Ccch---hhhhhhhhccCc
Confidence 4322 234444444433
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1.6e-14 Score=172.63 Aligned_cols=223 Identities=27% Similarity=0.379 Sum_probs=124.2
Q ss_pred cceeeeEEecCCccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccc
Q 002125 555 HVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERL 634 (963)
Q Consensus 555 ~l~~L~~l~~~~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l 634 (963)
.+..|.+.++....+|..+. ++|++|++++|+ +..+|..+. .+|+.|+|++|.+. .+|.... ..|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~----~LP~~l~------s~L 264 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINRIT----ELPERLP------SAL 264 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCccC----cCChhHh------CCC
Confidence 44455554555556676553 589999999865 567887654 57999999998642 2221000 112
Q ss_pred cccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccC
Q 002125 635 ASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKN 714 (963)
Q Consensus 635 ~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~ 714 (963)
..|.+ +++++..+|..+. ++|++|++++|.+. .+|..+. ++|+.|++++|.++.+|..+ .++|+.|++++
T Consensus 265 ~~L~L---s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~ 334 (754)
T PRK15370 265 QSLDL---FHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGE 334 (754)
T ss_pred CEEEC---cCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCccc--cccceeccccC
Confidence 22222 2344555665443 45666666666543 3443332 34666666666666665543 24666666666
Q ss_pred CCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCccc
Q 002125 715 CSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRL 794 (963)
Q Consensus 715 ~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 794 (963)
|. +..+|..+ .++|+.|++++|.+. .+|..+ .++|+.|+|++|+++.+|..+. .+|+.|++++|+|+.+
T Consensus 335 N~-Lt~LP~~l-----~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 335 NA-LTSLPASL-----PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRL 403 (754)
T ss_pred Cc-cccCChhh-----cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccC
Confidence 63 33455443 246666666666543 344433 2466666666666666665543 2566666666666666
Q ss_pred Cccc----cCCCCCCEEEeccCC
Q 002125 795 PESL----NQLSSLEYLQLHLRS 813 (963)
Q Consensus 795 p~~l----~~l~~L~~L~L~~~~ 813 (963)
|..+ +.++++..|+|.+|.
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCC
Confidence 5443 223455555555443
No 22
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.50 E-value=8.4e-15 Score=132.29 Aligned_cols=86 Identities=33% Similarity=0.578 Sum_probs=75.1
Q ss_pred EEEcCccccccCchHHHHHHHHhhCCCceEEeCCCCCCccchHHHHHHhhhcceeeeeeccCccchhhhHHHHHHHHHhh
Q 002125 29 VFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDELSKILECK 108 (963)
Q Consensus 29 vfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~~El~~~~~~~ 108 (963)
|||||+++| +.|+.+|++.|+++|+++|.|.++.+|+.+.++|.++|++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 6799999999999999999999999999999999999999999999999999999999999988843
Q ss_pred hcCCcEEEeEee
Q 002125 109 HDYGQIVIPVFC 120 (963)
Q Consensus 109 ~~~~~~v~pvf~ 120 (963)
.++.|+||..
T Consensus 77 --~~~~iipv~~ 86 (102)
T PF13676_consen 77 --RGKPIIPVRL 86 (102)
T ss_dssp --TSESEEEEEC
T ss_pred --CCCEEEEEEE
Confidence 4457999984
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=2.9e-13 Score=160.76 Aligned_cols=254 Identities=23% Similarity=0.277 Sum_probs=178.1
Q ss_pred eeEEecCCccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccc
Q 002125 559 LELVKVGIKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCK 638 (963)
Q Consensus 559 L~~l~~~~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~ 638 (963)
|.+.......+|..+. ++|+.|++.+| .+..+|.. +++|++|+|++|.+. .+|.+ ...|..|.
T Consensus 206 LdLs~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~Lt----sLP~l-------p~sL~~L~ 268 (788)
T PRK15387 206 LNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQLT----SLPVL-------PPGLLELS 268 (788)
T ss_pred EEcCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCccC----cccCc-------ccccceee
Confidence 3333444456787664 47999999985 46668753 589999999998643 22221 12233333
Q ss_pred cccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCC
Q 002125 639 LVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSEL 718 (963)
Q Consensus 639 l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l 718 (963)
+. ++ .+..+|.. .++|+.|++++|.+. .+|.. +++|+.|++++|.++.+|.. ..+|+.|++++| .+
T Consensus 269 Ls--~N-~L~~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L 334 (788)
T PRK15387 269 IF--SN-PLTHLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QL 334 (788)
T ss_pred cc--CC-chhhhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCC---cccccccccccC-cc
Confidence 33 32 34556653 357889999998754 56643 46799999999999988863 346778889888 44
Q ss_pred CCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccc
Q 002125 719 DGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESL 798 (963)
Q Consensus 719 ~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 798 (963)
..+|.. ..+|+.|++++|.+.+ +|.. ..+|+.|++++|.++.+|.. +++|+.|+|++|.|+.+|..
T Consensus 335 ~~LP~l------p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l- 400 (788)
T PRK15387 335 TSLPTL------PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL- 400 (788)
T ss_pred cccccc------ccccceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc-
Confidence 567742 3589999999998765 5543 35788999999999999864 35799999999999999864
Q ss_pred cCCCCCCEEEeccCCCCCCceecCCcchhhhHhhCchhhHHHHhccccccccceeeeecCCCCCC
Q 002125 799 NQLSSLEYLQLHLRSPRKLTSLNLSVNLRNYLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEIPK 863 (963)
Q Consensus 799 ~~l~~L~~L~L~~~~~~~L~~L~l~~n~~~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~iP~ 863 (963)
.++|+.|++++|.+..+.. ++.+ +.++++++|.++.+ |..+.....+..+.+.||++..
T Consensus 401 --~s~L~~LdLS~N~LssIP~--l~~~-L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 401 --PSELKELMVSGNRLTSLPM--LPSG-LLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred --ccCCCEEEccCCcCCCCCc--chhh-hhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCc
Confidence 3679999999987664432 3333 35678888988854 4445555666778888888743
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=6e-12 Score=160.09 Aligned_cols=292 Identities=15% Similarity=0.145 Sum_probs=184.1
Q ss_pred ccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHH
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQK 271 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 271 (963)
+|.....+|-|+.-++.+.+ ....+++.|+|++|.||||++.++.+. ++.+.|+. +.. ...+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~-l~~--~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYS-LDE--SDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEe-cCc--ccCCHHHHHH
Confidence 56667889999876666542 246789999999999999999998853 33688885 322 1233344444
Q ss_pred HHHHhhhcCCCC--------------CCHH----HHHHHHc--CCceEEEEcCCCCHH---HHHHHHHhccCCCCCceEE
Q 002125 272 ELLSKLLNDRNV--------------WNIE----SQLNRLA--RKKFLIVFDDVTHPR---QIESLIRRLDRLASGSRVI 328 (963)
Q Consensus 272 ~ll~~l~~~~~~--------------~~~~----~l~~~L~--~k~~LlVLDdv~~~~---~~~~l~~~l~~~~~gs~Ii 328 (963)
.++..+...... .... .+...+. +.+++|||||+...+ ..+.+...+....++.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 444444211000 1111 2223333 679999999996532 2223333333345678899
Q ss_pred EEeCCchhhhc--C-CcceEEEec----cCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhcCC
Q 002125 329 ITTRDKQVLKN--C-RARQIFRMK----ELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCG 401 (963)
Q Consensus 329 vTTR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~ 401 (963)
||||...-... . ......+++ +|+.+|+.++|...... . -..+.+.++.+.|+|+|+++..++..+..
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~--~---~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS--P---IEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC--C---CCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99998532211 1 112345555 99999999999765421 1 12355789999999999999998877654
Q ss_pred CCHHHHHHHHHHhhcCCChhHHHHHHH-HhhCCChhhHHHHHhhhcccCccChhHHHHHHhhcCCChhhhHHhhhcccCc
Q 002125 402 RSKEEWESAMRKLEVIPDKEIQEVLKI-SYDSLDDPQKNVFLDIACFLEGEHRDEVTSFFDASGFQAKIELSVLEGKSLI 480 (963)
Q Consensus 402 ~~~~~w~~~l~~l~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi 480 (963)
.... .......+...+...+.+.+.- .++.||++.+.++..+|+++ .++.+.+..+... -.+...++.|.+.+++
T Consensus 232 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l~ 307 (903)
T PRK04841 232 NNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGLF 307 (903)
T ss_pred CCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCCe
Confidence 3210 0111122222123456665444 48999999999999999986 5565544444432 2346779999999986
Q ss_pred eee----cCEEEEchhHHHHhhhhhccc
Q 002125 481 TCF----YNYIRMHDLIRDMGREIVRNE 504 (963)
Q Consensus 481 ~~~----~~~~~mHdlv~~~a~~i~~~e 504 (963)
... ...|+.|++++++.+.....+
T Consensus 308 ~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 308 IQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 532 237999999999999876443
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=1.1e-15 Score=174.81 Aligned_cols=232 Identities=25% Similarity=0.308 Sum_probs=137.6
Q ss_pred CCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccCC
Q 002125 578 NLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMF 657 (963)
Q Consensus 578 ~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l 657 (963)
+|++++++. +....+|++++.+.+|+.|+..+|..... +. .+.. +..|.-.....+.++.+|+....+
T Consensus 242 nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~l~~l----p~----ri~~---~~~L~~l~~~~nel~yip~~le~~ 309 (1081)
T KOG0618|consen 242 NLQYLDISH-NNLSNLPEWIGACANLEALNANHNRLVAL----PL----RISR---ITSLVSLSAAYNELEYIPPFLEGL 309 (1081)
T ss_pred cceeeecch-hhhhcchHHHHhcccceEecccchhHHhh----HH----HHhh---hhhHHHHHhhhhhhhhCCCccccc
Confidence 477777777 44556777777778888887777754211 00 0001 111111111123455677766677
Q ss_pred CCCCeeecccccccccCCccc-CCCC-CCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcccccccCCCCC
Q 002125 658 KSLTSLEIIDCQNFMMLPYEL-GNLK-ALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSSIFSLCMFKSL 734 (963)
Q Consensus 658 ~~L~~L~L~~~~~~~~~p~~~-~~l~-~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L 734 (963)
++|++|+|..|. ++.+|+.+ .-+. .|+.|+.+.|.+..+|.. -..++.|+.|.+.+|......-+.+.+ +.+|
T Consensus 310 ~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~---~~hL 385 (1081)
T KOG0618|consen 310 KSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN---FKHL 385 (1081)
T ss_pred ceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc---ccce
Confidence 788888887765 34444422 2222 255555666666655532 223455667777776554443333333 6677
Q ss_pred cEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccCCC
Q 002125 735 TSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLRSP 814 (963)
Q Consensus 735 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 814 (963)
+.|+|++|++.......+.+++.|+.|+||||+++.+|..+..+..|+.|...+|++..+| .+.+++.|+.+|++.|++
T Consensus 386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred eeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchh
Confidence 7777777765443334466777777777777777777777777777777777777777777 667777777777765553
Q ss_pred -----------CCCceecCCcch
Q 002125 815 -----------RKLTSLNLSVNL 826 (963)
Q Consensus 815 -----------~~L~~L~l~~n~ 826 (963)
++|+.|+|++|.
T Consensus 465 ~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 465 SEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhCCCcccceeeccCCc
Confidence 456666666665
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=2.9e-14 Score=148.80 Aligned_cols=128 Identities=20% Similarity=0.231 Sum_probs=63.9
Q ss_pred cceeeeEEecCCccCCC-ccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcccc
Q 002125 555 HVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIER 633 (963)
Q Consensus 555 ~l~~L~~l~~~~~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~ 633 (963)
....+++-.+.+..||+ .|+.+++||.|+|++|+....-|..|..|++|..|-+-++
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~---------------------- 125 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN---------------------- 125 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC----------------------
Confidence 33444544455555554 5666666666666665544445566666666555544442
Q ss_pred ccccccccccCcCCCcCCcc-ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCc-cccCCCCCcEEE
Q 002125 634 LASCKLVLEKCSSLQSLPSS-LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPK-SLNQLALLFRLK 711 (963)
Q Consensus 634 l~~L~l~l~~~~~l~~lP~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~ 711 (963)
++++.+|.. |++|.+|+.|.+.-|...-.....+..|++|..|.+..|.+..++. ++..+..++.+.
T Consensus 126 -----------NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 126 -----------NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred -----------CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 233344432 3444444444444444444444444445555555555555544444 344444444444
Q ss_pred ccCC
Q 002125 712 LKNC 715 (963)
Q Consensus 712 L~~~ 715 (963)
+..|
T Consensus 195 lA~n 198 (498)
T KOG4237|consen 195 LAQN 198 (498)
T ss_pred hhcC
Confidence 4433
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=4.9e-13 Score=148.38 Aligned_cols=154 Identities=25% Similarity=0.226 Sum_probs=68.6
Q ss_pred CCeeecccccccc----cCCcccCCC-CCCcEEEecCcccc-----ccCccccCCCCCcEEEccCCCCCCCCCccc-ccc
Q 002125 660 LTSLEIIDCQNFM----MLPYELGNL-KALEMLIVDGTAIR-----EVPKSLNQLALLFRLKLKNCSELDGISSSI-FSL 728 (963)
Q Consensus 660 L~~L~L~~~~~~~----~~p~~~~~l-~~L~~L~L~~n~l~-----~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~-~~l 728 (963)
|++|++++|.... .+...+..+ ++|+.|++++|.++ .++..+..+++|+.|++++|...+.....+ ..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 5555555555431 122233444 55555666555554 223334445555555555554332100000 011
Q ss_pred cCCCCCcEEEccCCCCCCc----CccccCCCCCccEEEcCCCCCccc-----Cccc-CCCCCCCEEECcCCCCc-----c
Q 002125 729 CMFKSLTSLEIIDCQNFMI----LPDELGNLKALETLIIDGTAMREV-----PESL-GQLSSVKNLVLTNNNLK-----R 793 (963)
Q Consensus 729 ~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~L~~n~l~~l-----p~~l-~~l~~L~~L~Ls~n~l~-----~ 793 (963)
..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.++.. ...+ ...+.|+.|++++|.++ .
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 269 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD 269 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHH
Confidence 1134555555555554322 223344455566666665555421 1111 12345556666655553 2
Q ss_pred cCccccCCCCCCEEEeccCC
Q 002125 794 LPESLNQLSSLEYLQLHLRS 813 (963)
Q Consensus 794 lp~~l~~l~~L~~L~L~~~~ 813 (963)
++..+..+++|+.|++++|.
T Consensus 270 l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 270 LAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHhcCCCccEEECCCCC
Confidence 23334444555555555433
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=3.4e-13 Score=149.60 Aligned_cols=220 Identities=22% Similarity=0.151 Sum_probs=154.4
Q ss_pred cCCCccccCCCCcEEeecCCCCc----cccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcccccccccccccc
Q 002125 568 ELPSSIECLSNLKKLYIVDCSKL----ESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEK 643 (963)
Q Consensus 568 ~lp~~~~~L~~L~~L~L~~~~~~----~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~ 643 (963)
..+..+..+.+|++|++++|... ..++..+...++|++|+++++.... .
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~----~----------------------- 66 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR----I----------------------- 66 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC----c-----------------------
Confidence 33445566777999999987642 2356667778889999998874311 0
Q ss_pred CcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCC---CcEEEecCcccc-----ccCccccCC-CCCcEEEccC
Q 002125 644 CSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKA---LEMLIVDGTAIR-----EVPKSLNQL-ALLFRLKLKN 714 (963)
Q Consensus 644 ~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~---L~~L~L~~n~l~-----~lp~~~~~l-~~L~~L~L~~ 714 (963)
+..+..++..+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|.++ .+...+..+ ++|+.|++++
T Consensus 67 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~ 146 (319)
T cd00116 67 PRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGR 146 (319)
T ss_pred chHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCC
Confidence 1122345556667889999999999987666665555554 999999999887 234456677 8999999999
Q ss_pred CCCCCCCCccc-ccccCCCCCcEEEccCCCCCCc----CccccCCCCCccEEEcCCCCCc-----ccCcccCCCCCCCEE
Q 002125 715 CSELDGISSSI-FSLCMFKSLTSLEIIDCQNFMI----LPDELGNLKALETLIIDGTAMR-----EVPESLGQLSSVKNL 784 (963)
Q Consensus 715 ~~~l~~lp~~~-~~l~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L 784 (963)
|...+.....+ ..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.++ .++..+..+++|+.|
T Consensus 147 n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 147 NRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL 226 (319)
T ss_pred CcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE
Confidence 97653222111 1223367899999999987642 3445566789999999999886 345667888999999
Q ss_pred ECcCCCCccc-Cccc-----cCCCCCCEEEeccCCC
Q 002125 785 VLTNNNLKRL-PESL-----NQLSSLEYLQLHLRSP 814 (963)
Q Consensus 785 ~Ls~n~l~~l-p~~l-----~~l~~L~~L~L~~~~~ 814 (963)
++++|.++.. +..+ ...+.|+.|++++|..
T Consensus 227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 9999988742 1111 1347888888887543
No 29
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.24 E-value=9.7e-10 Score=125.57 Aligned_cols=278 Identities=18% Similarity=0.163 Sum_probs=163.4
Q ss_pred ccCCCcccchhhHHHHHHhHhcC--CCCeEEEEEEccCCCChhhHHHHHHHHHhccCC--ceEEEEecchhhccCCHHHH
Q 002125 194 SYNKDLVGVEWRIKEIESLLCTG--FAGVYILGIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l 269 (963)
..++.++||++++++|...+... ....+.+.|+|++|+|||++++.+++.+....+ ..+++. . ........+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~---~~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-C---QIDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-C---CcCCCHHHH
Confidence 45678999999999999998532 234456789999999999999999998766542 233333 2 222345677
Q ss_pred HHHHHHhhhcCCCC---CCH----HHHHHHHc--CCceEEEEcCCCCHH------HHHHHHHhccCCCCCce--EEEEeC
Q 002125 270 QKELLSKLLNDRNV---WNI----ESQLNRLA--RKKFLIVFDDVTHPR------QIESLIRRLDRLASGSR--VIITTR 332 (963)
Q Consensus 270 ~~~ll~~l~~~~~~---~~~----~~l~~~L~--~k~~LlVLDdv~~~~------~~~~l~~~l~~~~~gs~--IivTTR 332 (963)
...++.++...... ... +.+.+.+. +++.+||||+++... .+..+....... .+++ +|.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEEC
Confidence 77787777652221 122 34444554 456899999997653 344444332221 2333 566666
Q ss_pred CchhhhcCC-------cceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHh----cCCchhHHHhhhhc--
Q 002125 333 DKQVLKNCR-------ARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYA----QGVPLALKVLGHHL-- 399 (963)
Q Consensus 333 ~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~----~g~PLal~~l~~~L-- 399 (963)
+..+..... ....+.+++++.++..+++..++-....+..-..+.++.+++.+ |..+.|+..+-.+.
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 543322211 12467899999999999998876321111111223344444444 44666766653321
Q ss_pred ---CC---CCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCChhhHHHHHhhhcccC----ccChhHHH----HHHhhcCC
Q 002125 400 ---CG---RSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLE----GEHRDEVT----SFFDASGF 465 (963)
Q Consensus 400 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~----~~~~~~l~----~~~~~~~~ 465 (963)
.+ .+.+....++++.. .....-.+..||.++|.++..++...+ ......+. .+....|.
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 24555655555441 233455688999999998877764432 12222222 12222233
Q ss_pred C------hhhhHHhhhcccCceee
Q 002125 466 Q------AKIELSVLEGKSLITCF 483 (963)
Q Consensus 466 ~------~~~~l~~L~~~sLi~~~ 483 (963)
. ...+++.|...|+|...
T Consensus 335 ~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 2 24568889999998764
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.17 E-value=2.1e-10 Score=126.87 Aligned_cols=258 Identities=15% Similarity=0.132 Sum_probs=152.7
Q ss_pred cccCCCcccchhhHHHHHHhHhc---CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT---GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
|....+|+|+++.++.+..++.. .....+.+.|+|++|+|||++|+.+++.+...+. +.. ....... ..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~~----~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEKP----GD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccCh----HH
Confidence 45668899999999999888763 2344567889999999999999999998754321 111 1000000 11
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH--HHHHHHHhccC-------------------CCCCceEE
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR--QIESLIRRLDR-------------------LASGSRVI 328 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~l~~-------------------~~~gs~Ii 328 (963)
...++.. + ++.-+|++|+++... ..+.+...+.. ..+.+-|.
T Consensus 93 l~~~l~~----------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 93 LAAILTN----------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred HHHHHHh----------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 1111111 1 234467777775432 11222111110 12234566
Q ss_pred EEeCCchhhhcC--CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhcCCCCHHH
Q 002125 329 ITTRDKQVLKNC--RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGRSKEE 406 (963)
Q Consensus 329 vTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~~~~~~ 406 (963)
.|+|...+.... .....+++++++.++..+++.+.+.... ..-..+.+..|++.|+|.|-.+..+...+ ..
T Consensus 156 at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~ 228 (328)
T PRK00080 156 ATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRV-----RD 228 (328)
T ss_pred ecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHH-----HH
Confidence 677755443221 1234689999999999999998874322 22344678999999999996555444322 12
Q ss_pred HHHHHHHhhcCCCh---hHHHHHHHHhhCCChhhHHHHH-hhhcccCc-cChhHHHHHHhhcCCChhhhHH-hhhcccCc
Q 002125 407 WESAMRKLEVIPDK---EIQEVLKISYDSLDDPQKNVFL-DIACFLEG-EHRDEVTSFFDASGFQAKIELS-VLEGKSLI 480 (963)
Q Consensus 407 w~~~l~~l~~~~~~---~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi 480 (963)
|.... .-...... .....+...+..|++..+..+. .+..|..+ ...+.+...+.......+..++ .|++.+||
T Consensus 229 ~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li 307 (328)
T PRK00080 229 FAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFI 307 (328)
T ss_pred HHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCc
Confidence 21110 00011111 2233455667889988888886 55566554 3567777777666666666777 89999999
Q ss_pred eee
Q 002125 481 TCF 483 (963)
Q Consensus 481 ~~~ 483 (963)
+..
T Consensus 308 ~~~ 310 (328)
T PRK00080 308 QRT 310 (328)
T ss_pred ccC
Confidence 754
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.8e-12 Score=141.45 Aligned_cols=192 Identities=22% Similarity=0.365 Sum_probs=137.1
Q ss_pred CCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccC
Q 002125 577 SNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCM 656 (963)
Q Consensus 577 ~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~ 656 (963)
..-...+|+. +....+|..+..+..|+.|.|..|. +..+|..+++
T Consensus 75 tdt~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n~----------------------------------~r~ip~~i~~ 119 (722)
T KOG0532|consen 75 TDTVFADLSR-NRFSELPEEACAFVSLESLILYHNC----------------------------------IRTIPEAICN 119 (722)
T ss_pred cchhhhhccc-cccccCchHHHHHHHHHHHHHHhcc----------------------------------ceecchhhhh
Confidence 3344555655 3345566666666666666665543 3467888888
Q ss_pred CCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcE
Q 002125 657 FKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTS 736 (963)
Q Consensus 657 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~ 736 (963)
+..|++|+|+.|++ ..+|..+..|+ |+.|.+++|+++.+|..++.+.+|..|+.+.| .+..+|..++. +.+|..
T Consensus 120 L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~---l~slr~ 193 (722)
T KOG0532|consen 120 LEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGY---LTSLRD 193 (722)
T ss_pred hhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhh---HHHHHH
Confidence 88888888888764 45666666665 88888888888888888888888888888887 55677776665 778888
Q ss_pred EEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccc---cCCCCCCEEEecc
Q 002125 737 LEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESL---NQLSSLEYLQLHL 811 (963)
Q Consensus 737 L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l---~~l~~L~~L~L~~ 811 (963)
|.+..|+... +|+.+..| .|..||+++|+++.||-.|..+..|++|-|.+|.|++=|..+ +...-.++|+..-
T Consensus 194 l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 194 LNVRRNHLED-LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred HHHhhhhhhh-CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchh
Confidence 8888777544 56666644 477888888888888888888888888888888888777655 3344455665544
No 32
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.15 E-value=3.3e-09 Score=122.48 Aligned_cols=292 Identities=16% Similarity=0.185 Sum_probs=185.7
Q ss_pred ccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHH
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQK 271 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 271 (963)
+|..+.+.|-|.+-++.+.. ..+.|.+.|..++|.|||||+.++.. ....-..+.|+..- ....+...+..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld---e~dndp~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD---ESDNDPARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC---CccCCHHHHHH
Confidence 45557788888866655543 34689999999999999999999988 44555678888632 22345566666
Q ss_pred HHHHhhhcCCCC--------------CCHHHHHHH----Hc--CCceEEEEcCCCC---HHHHHHHHHhccCCCCCceEE
Q 002125 272 ELLSKLLNDRNV--------------WNIESQLNR----LA--RKKFLIVFDDVTH---PRQIESLIRRLDRLASGSRVI 328 (963)
Q Consensus 272 ~ll~~l~~~~~~--------------~~~~~l~~~----L~--~k~~LlVLDdv~~---~~~~~~l~~~l~~~~~gs~Ii 328 (963)
.++..+...... ..+..+.+. +. .++..+||||..- +.--+.+.-.+....++-..|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 666666533222 122222222 22 4689999999743 222222322333345788999
Q ss_pred EEeCCchhhhcCC---cceEEEec----cCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhcCC
Q 002125 329 ITTRDKQVLKNCR---ARQIFRMK----ELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCG 401 (963)
Q Consensus 329 vTTR~~~v~~~~~---~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~ 401 (963)
||||...-..... .+...+++ .|+.+|+.++|.... .. +-....++.+.+..+|.+-|+..++=.+++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~---~l--~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG---SL--PLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC---CC--CCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 9999874432111 12234444 589999999997765 11 122345889999999999999999888873
Q ss_pred -CCHHHHHHHHHHhhcCCChhHHH-HHHHHhhCCChhhHHHHHhhhcccCccChhHHHHHHhhcCCChhhhHHhhhcccC
Q 002125 402 -RSKEEWESAMRKLEVIPDKEIQE-VLKISYDSLDDPQKNVFLDIACFLEGEHRDEVTSFFDASGFQAKIELSVLEGKSL 479 (963)
Q Consensus 402 -~~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sL 479 (963)
.+.+.-.. .+.-. .+.+.+ ..+--++.||++.|..++.+|++..- . +.+..-+... ......+++|.+++|
T Consensus 240 ~~~~~q~~~---~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f-~-~eL~~~Ltg~-~ng~amLe~L~~~gL 312 (894)
T COG2909 240 NTSAEQSLR---GLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF-N-DELCNALTGE-ENGQAMLEELERRGL 312 (894)
T ss_pred CCcHHHHhh---hccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh-h-HHHHHHHhcC-CcHHHHHHHHHhCCC
Confidence 23322111 11111 122332 33445789999999999999987542 1 2222222221 123455899999998
Q ss_pred ceee----cCEEEEchhHHHHhhhhhccc
Q 002125 480 ITCF----YNYIRMHDLIRDMGREIVRNE 504 (963)
Q Consensus 480 i~~~----~~~~~mHdlv~~~a~~i~~~e 504 (963)
+-.. .+.|+.|.++.||.+.....+
T Consensus 313 Fl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 313 FLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred ceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 7643 679999999999999887765
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.14 E-value=7.1e-10 Score=121.88 Aligned_cols=253 Identities=17% Similarity=0.156 Sum_probs=146.4
Q ss_pred CCcccchhhHHHHHHhHhcC---CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTG---FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKEL 273 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 273 (963)
..|||+++.+++|..++... ....+.+.++|++|+|||+||+.+++.+...+. +...... .....+. ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~---~~~~~l~-~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL---EKPGDLA-AI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh---cCchhHH-HH
Confidence 46999999999999888631 233556889999999999999999987654321 1111000 1111111 11
Q ss_pred HHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhcc-------------------CCCCCceEEEEeC
Q 002125 274 LSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLD-------------------RLASGSRVIITTR 332 (963)
Q Consensus 274 l~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~-------------------~~~~gs~IivTTR 332 (963)
+..+ +...++++|+++.. ...+.+...+. ...+.+-|.+||+
T Consensus 76 l~~~-----------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~ 138 (305)
T TIGR00635 76 LTNL-----------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR 138 (305)
T ss_pred HHhc-----------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCC
Confidence 1111 12345666665432 11122211110 1123455666777
Q ss_pred CchhhhcC--CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhcCCCCHHHHHHH
Q 002125 333 DKQVLKNC--RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGRSKEEWESA 410 (963)
Q Consensus 333 ~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~~~~~~w~~~ 410 (963)
...+.... .....+++++++.+|..+++.+.+.... ..-..+.+..|++.|+|.|-.+..++..+ |..+
T Consensus 139 ~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a 209 (305)
T TIGR00635 139 AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFA 209 (305)
T ss_pred ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHH
Confidence 65443221 1234789999999999999998874322 22335677899999999997665444432 1110
Q ss_pred HH-HhhcCCCh---hHHHHHHHHhhCCChhhHHHHH-hhhcccCc-cChhHHHHHHhhcCCChhhhHH-hhhcccCceee
Q 002125 411 MR-KLEVIPDK---EIQEVLKISYDSLDDPQKNVFL-DIACFLEG-EHRDEVTSFFDASGFQAKIELS-VLEGKSLITCF 483 (963)
Q Consensus 411 l~-~l~~~~~~---~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~ 483 (963)
.. .-...... .....+...|..+++.++..+. .++.+..+ ...+.+...+......++..++ .|++++||...
T Consensus 210 ~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 00 00001111 1222245567889988888776 44555433 4567777777776666777788 69999999644
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=2.2e-12 Score=134.97 Aligned_cols=264 Identities=16% Similarity=0.142 Sum_probs=167.5
Q ss_pred ccccccCCcccccccCCCcccccceeeeEEecCCccC----CCccccCCCCcEEeecCCCCcccccc-ccCCCCCccEEe
Q 002125 533 LMSLPISIPFKDLVNFPSVTSCHVYTLELVKVGIKEL----PSSIECLSNLKKLYIVDCSKLESISS-SIFKLKSLQSIE 607 (963)
Q Consensus 533 ~i~i~l~~~~~~~~~~~~f~~~~l~~L~~l~~~~~~l----p~~~~~L~~L~~L~L~~~~~~~~lp~-~~~~L~~L~~L~ 607 (963)
.+.|.++.+....+...+| ..+++||.++++.+.| |..|..|+.|..|-+.+|+.+..+|+ .|++|..|+.|.
T Consensus 69 tveirLdqN~I~~iP~~aF--~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAF--KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCcccCChhhc--cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3467778888889999999 9999999999988766 66899999998898989889999994 567899999998
Q ss_pred CcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCc-cccCCCCCCeeeccccccc------------ccC
Q 002125 608 ISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPS-SLCMFKSLTSLEIIDCQNF------------MML 674 (963)
Q Consensus 608 Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~-~~~~l~~L~~L~L~~~~~~------------~~~ 674 (963)
+.-|+..-. .. ..+..|+.+.+.-..-+.++.++. .+..+.+++.+.+..|.+. ...
T Consensus 147 lNan~i~Ci----r~------~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 147 LNANHINCI----RQ------DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred cChhhhcch----hH------HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 876653110 00 001111122111111123344444 3555566666665554411 112
Q ss_pred CcccCCCCCCcEEEecCccccccCccccCCCCCcEE---EccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccc
Q 002125 675 PYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRL---KLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDE 751 (963)
Q Consensus 675 p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L---~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~ 751 (963)
|..++......-..+.+..+..++..= ...+++.+ -.+.|......|..- +..+++|++|++++|.+...-+.+
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~k-f~c~~esl~s~~~~~d~~d~~cP~~c--f~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARK-FLCSLESLPSRLSSEDFPDSICPAKC--FKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhh-hhhhHHhHHHhhccccCcCCcChHHH--HhhcccceEeccCCCccchhhhhh
Confidence 222333333322233333333222210 01112211 112222222333221 345899999999999999988889
Q ss_pred cCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCccc-CccccCCCCCCEEEecc
Q 002125 752 LGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRL-PESLNQLSSLEYLQLHL 811 (963)
Q Consensus 752 l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~ 811 (963)
|.++..+++|.|..|++..+.. .|.+++.|+.|+|.+|+|+.+ |-.|..+.+|..|+|-.
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 9999999999999999987754 588999999999999999976 56677788887777743
No 35
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.10 E-value=1.9e-08 Score=113.63 Aligned_cols=280 Identities=18% Similarity=0.159 Sum_probs=157.7
Q ss_pred cccCCCcccchhhHHHHHHhHhc--CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCC------ceEEEEecchhhccC
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT--GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFE------GSYFAQNVREAEETG 264 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~~~~~~~~~~ 264 (963)
...++.++||++++++|...+.. .......+.|+|++|+|||++++++++.+....+ ..+|+.. ....
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~----~~~~ 86 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC----QILD 86 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC----CCCC
Confidence 34567899999999999999873 2234467899999999999999999987654322 2344432 2223
Q ss_pred CHHHHHHHHHHhhhc--CCCC---CC----HHHHHHHHc--CCceEEEEcCCCCHH-----HHHHHHHh--ccCC-CCCc
Q 002125 265 GIKDLQKELLSKLLN--DRNV---WN----IESQLNRLA--RKKFLIVFDDVTHPR-----QIESLIRR--LDRL-ASGS 325 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~--~~~~---~~----~~~l~~~L~--~k~~LlVLDdv~~~~-----~~~~l~~~--l~~~-~~gs 325 (963)
....+...++.++.. .... .. .+.+.+.+. +++++||||+++... .+..+... .... +...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 445667777777642 1111 11 234444443 567899999998762 12333322 1111 1233
Q ss_pred eEEEEeCCchhhhcCC-------cceEEEeccCCHHHHHHHHHHhhc---CCCCCCCcHHHHHHHHHHHhcCCchh-HHH
Q 002125 326 RVIITTRDKQVLKNCR-------ARQIFRMKELEDADAHKLFCQCAF---GGDHPDASHIELTDKAIKYAQGVPLA-LKV 394 (963)
Q Consensus 326 ~IivTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~g~PLa-l~~ 394 (963)
.+|.+|.......... ....+.+++++.+|..+++..++- ......++..+.+.+++....|.|.. +..
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 4555554443221111 124688999999999999988763 11222233334455667777788743 332
Q ss_pred hhhhc-----CC---CCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCChhhHHHHHhhhcccC-c---cChhHHHH----
Q 002125 395 LGHHL-----CG---RSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLE-G---EHRDEVTS---- 458 (963)
Q Consensus 395 l~~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-~---~~~~~l~~---- 458 (963)
+-... .+ .+.+..+.+.+.+. .....-....||.+++.++..++...+ + .....+..
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 21111 11 24444554444431 233445678999998887776664322 1 12222222
Q ss_pred HHhhcCCC------hhhhHHhhhcccCceee
Q 002125 459 FFDASGFQ------AKIELSVLEGKSLITCF 483 (963)
Q Consensus 459 ~~~~~~~~------~~~~l~~L~~~sLi~~~ 483 (963)
+....|.. ...++..|...|+|+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11112221 24568889999999865
No 36
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.09 E-value=2.3e-10 Score=120.59 Aligned_cols=192 Identities=18% Similarity=0.227 Sum_probs=101.2
Q ss_pred cccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH------H--
Q 002125 199 LVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL------Q-- 270 (963)
Q Consensus 199 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l------~-- 270 (963)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+...+.-..++|+........ ...... .
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999999753 35688999999999999999999977443323444432211110 011111 1
Q ss_pred --HHHHHhhhcCCC-----------CCCHHHHHHHHc--CCceEEEEcCCCCHH-------H-HHHHHHhccC--CCCCc
Q 002125 271 --KELLSKLLNDRN-----------VWNIESQLNRLA--RKKFLIVFDDVTHPR-------Q-IESLIRRLDR--LASGS 325 (963)
Q Consensus 271 --~~ll~~l~~~~~-----------~~~~~~l~~~L~--~k~~LlVLDdv~~~~-------~-~~~l~~~l~~--~~~gs 325 (963)
+.+...+..... ...+..+.+.+. +++++||+||++... . +..+...+.. .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 112221111110 033345555554 346999999986544 1 2233322222 12333
Q ss_pred eEEEEeCCchhhhc--------CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHH
Q 002125 326 RVIITTRDKQVLKN--------CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 326 ~IivTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
.+|+++........ .+....+.+++|+.+++.+++...+-.. ..-+...+..++|...+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 34444444433322 2233459999999999999998865322 11112345679999999999998764
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.08 E-value=2.4e-09 Score=131.04 Aligned_cols=302 Identities=15% Similarity=0.211 Sum_probs=176.3
Q ss_pred CcccchhhHHHHHHhHhcC-CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCce---EEEEecchhhccCCHHHHHHHH
Q 002125 198 DLVGVEWRIKEIESLLCTG-FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGS---YFAQNVREAEETGGIKDLQKEL 273 (963)
Q Consensus 198 ~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~---~~~~~~~~~~~~~~~~~l~~~l 273 (963)
.++||+.+++.|...+..- .....++.+.|.+|||||+|+++|...+.+.+... .|-. ......-..+....+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q-~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQ-FERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhccc-ccCCCchHHHHHHHHHH
Confidence 3789999999999888743 34467999999999999999999999776552111 1100 00000000111112222
Q ss_pred HHh-------------------hhcCCCC--C---------------------CHH---------HHHHHH-cCCceEEE
Q 002125 274 LSK-------------------LLNDRNV--W---------------------NIE---------SQLNRL-ARKKFLIV 301 (963)
Q Consensus 274 l~~-------------------l~~~~~~--~---------------------~~~---------~l~~~L-~~k~~LlV 301 (963)
..+ ++..... + ... .+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 222 2111110 0 000 111112 35699999
Q ss_pred EcCC-CCHHH----HHHHHHhcc--CC-CCCceEEEEeCCc--hhhhcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCC
Q 002125 302 FDDV-THPRQ----IESLIRRLD--RL-ASGSRVIITTRDK--QVLKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPD 371 (963)
Q Consensus 302 LDdv-~~~~~----~~~l~~~l~--~~-~~gs~IivTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 371 (963)
+||+ |-+.. ++.++.... .. ....-.+.|.+.. .+.........+.+.||+..+..++.........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 9999 43333 333333322 00 0011122333322 1122223446899999999999999877663222
Q ss_pred CcHHHHHHHHHHHhcCCchhHHHhhhhcCCC-------CHHHHHHHHHHhhcCC-ChhHHHHHHHHhhCCChhhHHHHHh
Q 002125 372 ASHIELTDKAIKYAQGVPLALKVLGHHLCGR-------SKEEWESAMRKLEVIP-DKEIQEVLKISYDSLDDPQKNVFLD 443 (963)
Q Consensus 372 ~~~~~~~~~i~~~~~g~PLal~~l~~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~~~k~~fl~ 443 (963)
....+....|.++..|+|+.+..+-..+... +...|..-...+.... .+.+.+.+..-.+.||...|+++..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2234668899999999999999988887652 2334554444443322 1235556888899999999999999
Q ss_pred hhcccCccChhHHHHHHhhcCCCh-hhhHHhhhcccCceee--------cC---EEEEchhHHHHhhhhhcc
Q 002125 444 IACFLEGEHRDEVTSFFDASGFQA-KIELSVLEGKSLITCF--------YN---YIRMHDLIRDMGREIVRN 503 (963)
Q Consensus 444 la~f~~~~~~~~l~~~~~~~~~~~-~~~l~~L~~~sLi~~~--------~~---~~~mHdlv~~~a~~i~~~ 503 (963)
.||+...++.+.+..++....... ....+.|.....+..+ .. +-..|+.+|+.+....-+
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 999999999888888776543322 2233344433333211 11 225789988888765543
No 38
>PF05729 NACHT: NACHT domain
Probab=99.06 E-value=1.7e-09 Score=107.33 Aligned_cols=142 Identities=19% Similarity=0.328 Sum_probs=86.9
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccC------CceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHH-HH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLN-RL 293 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~-~L 293 (963)
|++.|+|.+|+||||+++.++..+.... ...+|+ ..+..........+...+.......... ..+.+.. ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~ 78 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISDSNNSRSLADLLFDQLPESIAP-IEELLQELLE 78 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhhccccchHHHHHHHhhccchhh-hHHHHHHHHH
Confidence 5789999999999999999998775554 233333 3443333222223333333333221111 1111222 23
Q ss_pred cCCceEEEEcCCCCHHH---------HHHHHHh-ccC-CCCCceEEEEeCCchh---hhcCCcceEEEeccCCHHHHHHH
Q 002125 294 ARKKFLIVFDDVTHPRQ---------IESLIRR-LDR-LASGSRVIITTRDKQV---LKNCRARQIFRMKELEDADAHKL 359 (963)
Q Consensus 294 ~~k~~LlVLDdv~~~~~---------~~~l~~~-l~~-~~~gs~IivTTR~~~v---~~~~~~~~~~~l~~L~~~ea~~L 359 (963)
..++++||+|++++... +..++.. +.. ..++.+++||+|.... .........+++.+|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 57899999999976432 2222222 221 3578999999998766 22334446899999999999999
Q ss_pred HHHhh
Q 002125 360 FCQCA 364 (963)
Q Consensus 360 f~~~a 364 (963)
+.++.
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 87654
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1.8e-11 Score=133.77 Aligned_cols=165 Identities=24% Similarity=0.429 Sum_probs=86.6
Q ss_pred ccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcC
Q 002125 567 KELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSS 646 (963)
Q Consensus 567 ~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~ 646 (963)
..+|..+..+-.|..|.|.. +.+..+|..+++|..|.+|||+.|.
T Consensus 88 ~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~Nq---------------------------------- 132 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQ---------------------------------- 132 (722)
T ss_pred ccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccch----------------------------------
Confidence 34444444444455555544 3345555555566666666655543
Q ss_pred CCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccc
Q 002125 647 LQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIF 726 (963)
Q Consensus 647 l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 726 (963)
+..+|..++.|+ |+.|-+++|+ ++.+|+.++.+..|..|+.+.|.+..+|+.++++.+|+.|++..| .+..+|..+.
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~ 209 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELC 209 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHh
Confidence 224455555333 5555555443 445555555555556666666666666655666666666655555 3334454443
Q ss_pred cccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcc
Q 002125 727 SLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPES 774 (963)
Q Consensus 727 ~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~ 774 (963)
. | .|..||++.|++ ..+|..|.+|+.|++|-|.+|.+++-|..
T Consensus 210 ~---L-pLi~lDfScNki-s~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 210 S---L-PLIRLDFSCNKI-SYLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred C---C-ceeeeecccCce-eecchhhhhhhhheeeeeccCCCCCChHH
Confidence 3 2 355555554433 33555556666666666666655554443
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=5.7e-10 Score=127.58 Aligned_cols=159 Identities=28% Similarity=0.428 Sum_probs=111.1
Q ss_pred cCCccccCCC-CCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCccccc
Q 002125 649 SLPSSLCMFK-SLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFS 727 (963)
Q Consensus 649 ~lP~~~~~l~-~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~ 727 (963)
.+|+....+. +|+.|++++|.+ ..+|..++++++|+.|++++|.+..+|...+.++.|+.|++++| .+..+|..+..
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~ 207 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIEL 207 (394)
T ss_pred cCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhhhh
Confidence 4555555453 777777777653 44455677777788888888877777776667777778887777 55566665422
Q ss_pred ccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEE
Q 002125 728 LCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYL 807 (963)
Q Consensus 728 l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 807 (963)
...|++|.+++|... ..+..+.++.++..|.+.+|++..++..++.+++|+.|++++|.++.++. ++.+.+|+.|
T Consensus 208 ---~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L 282 (394)
T COG4886 208 ---LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLREL 282 (394)
T ss_pred ---hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEE
Confidence 445777777777522 34455677777777777788777777777888888888888888887776 7777788888
Q ss_pred EeccCCC
Q 002125 808 QLHLRSP 814 (963)
Q Consensus 808 ~L~~~~~ 814 (963)
+++++..
T Consensus 283 ~~s~n~~ 289 (394)
T COG4886 283 DLSGNSL 289 (394)
T ss_pred eccCccc
Confidence 8776443
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.6e-10 Score=122.87 Aligned_cols=134 Identities=24% Similarity=0.282 Sum_probs=61.4
Q ss_pred CCCCCeeeccccccccc-CCcccCCCCCCcEEEecCcc-ccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCC
Q 002125 657 FKSLTSLEIIDCQNFMM-LPYELGNLKALEMLIVDGTA-IREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSL 734 (963)
Q Consensus 657 l~~L~~L~L~~~~~~~~-~p~~~~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L 734 (963)
+++|+.|.|+.|.+... +-.....+++|+.|+|.+|. +..--.+...+..|+.|+|++|+... .+. +.....|+.|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~-~~~~~~l~~L 273 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQ-GYKVGTLPGL 273 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccc-ccccccccch
Confidence 55666666666655421 22223345556666666663 22111223345556666666654332 121 1112235555
Q ss_pred cEEEccCCCCCCc-Cccc-----cCCCCCccEEEcCCCCCcccCc--ccCCCCCCCEEECcCCCCc
Q 002125 735 TSLEIIDCQNFMI-LPDE-----LGNLKALETLIIDGTAMREVPE--SLGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 735 ~~L~l~~~~~~~~-~p~~-----l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~ 792 (963)
..|+++.|.+... +|+. ...+++|++|++..|++.+++. .+..+.+|+.|.+..|.|+
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 5555555544322 2221 2344555555555555544432 2334445555555555443
No 42
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.93 E-value=9.9e-08 Score=102.91 Aligned_cols=175 Identities=14% Similarity=0.132 Sum_probs=105.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCH----HHHHHH---
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNI----ESQLNR--- 292 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~----~~l~~~--- 292 (963)
..++.|+|++|+||||+++.+++.+...--..+++. ....+..++...+...++........ ..+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 458899999999999999999987652211122222 11234456666777666443222211 122222
Q ss_pred --HcCCceEEEEcCCCCHH--HHHHHHHhcc---CCCCCceEEEEeCCchh--hhc-----C--CcceEEEeccCCHHHH
Q 002125 293 --LARKKFLIVFDDVTHPR--QIESLIRRLD---RLASGSRVIITTRDKQV--LKN-----C--RARQIFRMKELEDADA 356 (963)
Q Consensus 293 --L~~k~~LlVLDdv~~~~--~~~~l~~~l~---~~~~gs~IivTTR~~~v--~~~-----~--~~~~~~~l~~L~~~ea 356 (963)
..+++.++|+||++... .++.+..... .......|++|....-. +.. . .....+++++++.+|.
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 25788999999997743 4454432211 11223345566553311 110 0 1134678999999999
Q ss_pred HHHHHHhhcCCC--CCCCcHHHHHHHHHHHhcCCchhHHHhhhhc
Q 002125 357 HKLFCQCAFGGD--HPDASHIELTDKAIKYAQGVPLALKVLGHHL 399 (963)
Q Consensus 357 ~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L 399 (963)
.+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999887653211 1122345788999999999999999888765
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=1.2e-09 Score=125.02 Aligned_cols=185 Identities=30% Similarity=0.418 Sum_probs=145.2
Q ss_pred ccccCCCCcEEeecCCCCccccccccCCCC-CccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcC
Q 002125 572 SIECLSNLKKLYIVDCSKLESISSSIFKLK-SLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSL 650 (963)
Q Consensus 572 ~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~-~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~l 650 (963)
.+..++.++.|++.+ +.+..+|.....+. +|+.|++++|.+ ..+
T Consensus 111 ~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i----------------------------------~~l 155 (394)
T COG4886 111 ELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKI----------------------------------ESL 155 (394)
T ss_pred hhhcccceeEEecCC-cccccCccccccchhhcccccccccch----------------------------------hhh
Confidence 445556788888876 45667777777774 888888888753 356
Q ss_pred CccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccC
Q 002125 651 PSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCM 730 (963)
Q Consensus 651 P~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 730 (963)
|..+..+++|+.|++++|.+ ..+|...+.+++|+.|++++|.++.+|..+..+..|+.|.+++|.. ...+..+..
T Consensus 156 ~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~--- 230 (394)
T COG4886 156 PSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSN--- 230 (394)
T ss_pred hhhhhccccccccccCCchh-hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhh---
Confidence 66678899999999999875 4556566688999999999999999999887788899999999853 334444444
Q ss_pred CCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccc
Q 002125 731 FKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESL 798 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 798 (963)
+.++..|.+.+|.... ++..++.+++|+.|++++|.++.++. ++.+.+|+.|++++|.+..++...
T Consensus 231 ~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 231 LKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccccccccCCceeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhh
Confidence 6777777766665433 47778999999999999999999988 999999999999999988766443
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=5.2e-10 Score=112.98 Aligned_cols=131 Identities=21% Similarity=0.223 Sum_probs=76.5
Q ss_pred cCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCC
Q 002125 678 LGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKA 757 (963)
Q Consensus 678 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 757 (963)
+..++.|++|||++|.|+.+..++.-+++++.|+++.|.... +. ++..+++|+.|+|++|.+.. +..+-..+-+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~----nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGN 353 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ----NLAELPQLQLLDLSGNLLAE-CVGWHLKLGN 353 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceee-eh----hhhhcccceEeecccchhHh-hhhhHhhhcC
Confidence 334455666666666666666666666666666666664321 11 12236666666666665432 2222234556
Q ss_pred ccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccC--ccccCCCCCCEEEeccCCCC
Q 002125 758 LETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLP--ESLNQLSSLEYLQLHLRSPR 815 (963)
Q Consensus 758 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~~ 815 (963)
+++|.|++|.+.++ ..++.|-+|..||+++|+|..+. ..|++||.|+.|.|.+|.+.
T Consensus 354 IKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred EeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 66777777766655 24566666777777777776654 34677777776666665443
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.1e-10 Score=117.32 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=94.5
Q ss_pred cCCCCCCeeecccccccccCC--cccCCCCCCcEEEecCccccccCcc--ccCCCCCcEEEccCCCCCCCCCcccccccC
Q 002125 655 CMFKSLTSLEIIDCQNFMMLP--YELGNLKALEMLIVDGTAIREVPKS--LNQLALLFRLKLKNCSELDGISSSIFSLCM 730 (963)
Q Consensus 655 ~~l~~L~~L~L~~~~~~~~~p--~~~~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 730 (963)
..|++++.|||+.|-+....| .....|++|+.|+|+.|.+...-++ -..+++|+.|.|+.|.....--.. -+..
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~--~~~~ 220 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW--ILLT 220 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHH--HHHh
Confidence 346777777777765544332 3455677777777777776533222 235667777777777543110001 1122
Q ss_pred CCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccC--cccCCCCCCCEEECcCCCCccc--Ccc-----ccCC
Q 002125 731 FKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVP--ESLGQLSSVKNLVLTNNNLKRL--PES-----LNQL 801 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~l--p~~-----l~~l 801 (963)
+++|+.|++..|............+..|++|+|++|++..++ ...+.|+.|..|+++.|.+.+| |++ ...+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 677777777777533333333445667777777777777666 4466777777777777777643 433 3556
Q ss_pred CCCCEEEeccCCC
Q 002125 802 SSLEYLQLHLRSP 814 (963)
Q Consensus 802 ~~L~~L~L~~~~~ 814 (963)
++|++|+++.|+.
T Consensus 301 ~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 301 PKLEYLNISENNI 313 (505)
T ss_pred ccceeeecccCcc
Confidence 7777777766655
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=3.1e-09 Score=104.07 Aligned_cols=120 Identities=24% Similarity=0.325 Sum_probs=37.5
Q ss_pred CCcEEEecCccccccCcccc-CCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCcccc-CCCCCccE
Q 002125 683 ALEMLIVDGTAIREVPKSLN-QLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDEL-GNLKALET 760 (963)
Q Consensus 683 ~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~ 760 (963)
.+++|+|++|.|+.+. .++ .+.+|+.|++++|. +..++. +..++.|+.|++++|.+... ++.+ ..+++|+.
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~----l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG----LPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--TT--------TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC----ccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 3445555555554442 233 34455555555552 222221 22255555555555554432 2222 24566667
Q ss_pred EEcCCCCCcccC--cccCCCCCCCEEECcCCCCcccCc----cccCCCCCCEEEe
Q 002125 761 LIIDGTAMREVP--ESLGQLSSVKNLVLTNNNLKRLPE----SLNQLSSLEYLQL 809 (963)
Q Consensus 761 L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L 809 (963)
|++++|+|..+. ..+..+++|+.|+|.+|.++.-+. .+..+|+|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777777666443 235667778888888887775552 2466777777664
No 47
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=1e-08 Score=109.98 Aligned_cols=257 Identities=19% Similarity=0.241 Sum_probs=174.7
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCC--CCCHHHHHHHHcC
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRN--VWNIESQLNRLAR 295 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~--~~~~~~l~~~L~~ 295 (963)
...|.+.++|.|||||||++-.+.. +...|...+|..+...+++..-+.-.. ...+.-... ......+..+..+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~---ag~~gl~~~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTL---AGALGLHVQPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHH---HhhcccccccchHHHHHHHHHHhh
Confidence 3468899999999999999999999 888998888877776665543332222 221221111 1344577788889
Q ss_pred CceEEEEcCCCCHHH-HHHHHHhccCCCCCceEEEEeCCchhhhcCCcceEEEeccCCHH-HHHHHHHHhhcCCC---CC
Q 002125 296 KKFLIVFDDVTHPRQ-IESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMKELEDA-DAHKLFCQCAFGGD---HP 370 (963)
Q Consensus 296 k~~LlVLDdv~~~~~-~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~---~~ 370 (963)
++.++|+||..+... ...+...+....+.-+|+.|+|.... ...+..+.++.|+.. ++.++|...+.... .-
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 999999999876543 34444444444566778999997533 244567788888776 78999887662111 11
Q ss_pred CCcHHHHHHHHHHHhcCCchhHHHhhhhcCCCCHHHHHHHHH----HhhcC------CChhHHHHHHHHhhCCChhhHHH
Q 002125 371 DASHIELTDKAIKYAQGVPLALKVLGHHLCGRSKEEWESAMR----KLEVI------PDKEIQEVLKISYDSLDDPQKNV 440 (963)
Q Consensus 371 ~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~~~~~~w~~~l~----~l~~~------~~~~i~~~l~~sy~~L~~~~k~~ 440 (963)
.........+|++..+|.|++|..+++..+.....+-...+. .+... ..+.....+..||.-|..-++..
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 233445688999999999999999999988766555433332 22221 12446678999999999999999
Q ss_pred HHhhhcccCccChhHHHHHHhhcC-------CChhhhHHhhhcccCceee
Q 002125 441 FLDIACFLEGEHRDEVTSFFDASG-------FQAKIELSVLEGKSLITCF 483 (963)
Q Consensus 441 fl~la~f~~~~~~~~l~~~~~~~~-------~~~~~~l~~L~~~sLi~~~ 483 (963)
|-.++.|..++..+.. .+.+.| +.....+..+++++++...
T Consensus 245 ~~rLa~~~g~f~~~l~--~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 245 FGRLAVFVGGFDLGLA--LAVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred hcchhhhhhhhcccHH--HHHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 9999999888876522 222222 2234456778888887544
No 48
>PRK06893 DNA replication initiation factor; Validated
Probab=98.77 E-value=1.2e-07 Score=98.94 Aligned_cols=150 Identities=16% Similarity=0.234 Sum_probs=93.8
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFL 299 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~L 299 (963)
.+.+.|+|.+|+|||+||+++++.+..+...+.|+... .. .....++ .+.++ +.-+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~----~~---~~~~~~~----------------~~~~~-~~dl 94 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS----KS---QYFSPAV----------------LENLE-QQDL 94 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH----Hh---hhhhHHH----------------Hhhcc-cCCE
Confidence 35789999999999999999999876666666777521 00 0000111 11222 2358
Q ss_pred EEEcCCCCH---HHHH-HHHHhccCC-CCCceEEEEeCCc----------hhhhcCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 300 IVFDDVTHP---RQIE-SLIRRLDRL-ASGSRVIITTRDK----------QVLKNCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 300 lVLDdv~~~---~~~~-~l~~~l~~~-~~gs~IivTTR~~----------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
||+||++.. .+|+ .+...+... ..|..+||+|.+. .+...+.....+++++++.++.++++.+.+
T Consensus 95 LilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a 174 (229)
T PRK06893 95 VCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA 174 (229)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH
Confidence 999999763 3333 233222211 2456665544432 344444455689999999999999999988
Q ss_pred cCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 365 FGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 365 ~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
..... .-.++..+.|++++.|..-++..+
T Consensus 175 ~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 175 YQRGI--ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHcCC--CCCHHHHHHHHHhccCCHHHHHHH
Confidence 64332 223466788888888777655544
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=1.8e-09 Score=109.14 Aligned_cols=133 Identities=21% Similarity=0.260 Sum_probs=109.1
Q ss_pred CCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCc
Q 002125 656 MFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLT 735 (963)
Q Consensus 656 ~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~ 735 (963)
....|++|||++|.+ ..+-++..-++.++.|+++.|.|..+.. +..|++|+.|+|++| .+..+..+-.+ +.+.+
T Consensus 282 TWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~K---LGNIK 355 (490)
T KOG1259|consen 282 TWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLK---LGNIK 355 (490)
T ss_pred hHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhh---hcCEe
Confidence 357899999999874 4566777788899999999999998866 889999999999998 44455444444 77899
Q ss_pred EEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccC--cccCCCCCCCEEECcCCCCcccCc
Q 002125 736 SLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVP--ESLGQLSSVKNLVLTNNNLKRLPE 796 (963)
Q Consensus 736 ~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~ 796 (963)
+|.|++|.+... ..++.+-+|..||+++|+|..+. ..+++|+.|+.|.|.+|.+..+|+
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 999999865332 34678889999999999998664 579999999999999999998875
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.75 E-value=2.4e-09 Score=130.61 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=68.6
Q ss_pred hhhhhhhcccccccccccccCCcc--cccccCCCcccccceeeeEEecCC----ccCCCccccCCCCcEEeecCCCCccc
Q 002125 519 EDIYKVLKNNTCESLMSLPISIPF--KDLVNFPSVTSCHVYTLELVKVGI----KELPSSIECLSNLKKLYIVDCSKLES 592 (963)
Q Consensus 519 ~~~~~~l~~~~~~~~i~i~l~~~~--~~~~~~~~f~~~~l~~L~~l~~~~----~~lp~~~~~L~~L~~L~L~~~~~~~~ 592 (963)
.++.+......+....++.+..+. ...++.+.| ..|+.|++|+++. ..+|++++.|-+||||++++ ..+..
T Consensus 533 ~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff--~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~ 609 (889)
T KOG4658|consen 533 NKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFF--RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISH 609 (889)
T ss_pred cchhhccCCCCCCccceEEEeecchhhhhcCHHHH--hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccc
Confidence 344444443333322244444332 344555568 8999999999973 57999999999999999998 66889
Q ss_pred cccccCCCCCccEEeCcCCccc
Q 002125 593 ISSSIFKLKSLQSIEISNCSIL 614 (963)
Q Consensus 593 lp~~~~~L~~L~~L~Ls~n~~l 614 (963)
+|.++++|+.|.+||+..+..+
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred cchHHHHHHhhheecccccccc
Confidence 9999999999999999987654
No 51
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=1.5e-08 Score=99.37 Aligned_cols=118 Identities=24% Similarity=0.341 Sum_probs=40.5
Q ss_pred cCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCc
Q 002125 690 DGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMR 769 (963)
Q Consensus 690 ~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~ 769 (963)
..+.|...|. +.+..+++.|+|.+|.. ..+.. +.. .+.+|+.|++++|.+... +.+..++.|++|++++|.|+
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~I-~~Ie~-L~~--~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQI-STIEN-LGA--TLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ---------------------------------S---T--T-TT--EEE-TTS--S----TT----TT--EEE--SS---
T ss_pred cccccccccc-ccccccccccccccccc-ccccc-hhh--hhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC
Confidence 3344555554 55667899999999843 33322 210 278999999999987654 24778999999999999999
Q ss_pred ccCccc-CCCCCCCEEECcCCCCcccC--ccccCCCCCCEEEeccCCC
Q 002125 770 EVPESL-GQLSSVKNLVLTNNNLKRLP--ESLNQLSSLEYLQLHLRSP 814 (963)
Q Consensus 770 ~lp~~l-~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~ 814 (963)
.++..+ ..+++|+.|+|++|+|..+- ..+..+++|+.|+|.+|.+
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 997665 46899999999999998765 3467888888888876543
No 52
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.69 E-value=6.4e-07 Score=104.64 Aligned_cols=242 Identities=15% Similarity=0.115 Sum_probs=127.2
Q ss_pred cccCCCcccchhhHHHHHHhHhc---CCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-----CC--ceEEEEecchhhc
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT---GFAGVYILGIWGIGGIGKTTIADAVFNKISRH-----FE--GSYFAQNVREAEE 262 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~--~~~~~~~~~~~~~ 262 (963)
...++.+.|||+|+++|...|.. +.....++.|+|.+|.|||+.++.|.+.+.+. .+ ..+++.+ ..
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC----m~ 826 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING----MN 826 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC----Cc
Confidence 34568899999999999988873 33334677899999999999999999876432 12 1234432 11
Q ss_pred cCCHHHHHHHHHHhhhcCCCCC---CHH---HHHHHHc---CCceEEEEcCCCCHH--HHHHHHHhccCC-CCCceEEE-
Q 002125 263 TGGIKDLQKELLSKLLNDRNVW---NIE---SQLNRLA---RKKFLIVFDDVTHPR--QIESLIRRLDRL-ASGSRVII- 329 (963)
Q Consensus 263 ~~~~~~l~~~ll~~l~~~~~~~---~~~---~l~~~L~---~k~~LlVLDdv~~~~--~~~~l~~~l~~~-~~gs~Iiv- 329 (963)
......+...+..++.+..... ..+ .+...+. +...+||||+|+... .-+.|...+.+. ..+++|+|
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEE
Confidence 2334455555556664433321 122 3333331 234589999997543 112222222211 23555544
Q ss_pred -EeCCc--------hhhhcCCcceEEEeccCCHHHHHHHHHHhhcCC-CCCCCc-HHHHHHHHHHHhcCCchhHHHhhhh
Q 002125 330 -TTRDK--------QVLKNCRARQIFRMKELEDADAHKLFCQCAFGG-DHPDAS-HIELTDKAIKYAQGVPLALKVLGHH 398 (963)
Q Consensus 330 -TTR~~--------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~-~~~~~~~i~~~~~g~PLal~~l~~~ 398 (963)
+|.+. .+...++ ...+...+++.+|-.+++..++-.. ....++ .+-+|+.++...|..-.||.++-.+
T Consensus 907 GISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred EecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 33221 1111222 2246679999999999999887421 111111 2222232222233344555544333
Q ss_pred cC--C---CCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCChhhHHHHHhhhc
Q 002125 399 LC--G---RSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIAC 446 (963)
Q Consensus 399 L~--~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~ 446 (963)
.. + ...+....+..++.. ..+.-....||.+.|.++..+..
T Consensus 986 gEikegskVT~eHVrkAleeiE~-------srI~e~IktLPlHqKLVLlALIl 1031 (1164)
T PTZ00112 986 FENKRGQKIVPRDITEATNQLFD-------SPLTNAINYLPWPFKMFLTCLIV 1031 (1164)
T ss_pred HhhcCCCccCHHHHHHHHHHHHh-------hhHHHHHHcCCHHHHHHHHHHHH
Confidence 31 1 122333333333221 12333446788888877665543
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.8e-07 Score=99.82 Aligned_cols=171 Identities=22% Similarity=0.360 Sum_probs=104.8
Q ss_pred cCCCcccchhhH---HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHH
Q 002125 195 YNKDLVGVEWRI---KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQK 271 (963)
Q Consensus 195 ~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 271 (963)
..+++||.+.-+ .-|..++. .+.+.-..+||++|+||||||+.++......|...-=+ ..++.++.+
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~ 91 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLRE 91 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHH
Confidence 334555554443 22344443 34566677999999999999999998776665432111 233444332
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEE--EeCCchhhh---cCCcce
Q 002125 272 ELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTH--PRQIESLIRRLDRLASGSRVII--TTRDKQVLK---NCRARQ 344 (963)
Q Consensus 272 ~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v~~---~~~~~~ 344 (963)
-+ +. .-+.+..+++.+|++|.|.. ..|-+.|++.. ..|.-|+| ||.++...- -.....
T Consensus 92 i~-e~-----------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 92 II-EE-----------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred HH-HH-----------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 22 21 11234458999999999954 44567777665 36666665 677664321 113457
Q ss_pred EEEeccCCHHHHHHHHHHhhcCCCCC-----CCcHHHHHHHHHHHhcCCch
Q 002125 345 IFRMKELEDADAHKLFCQCAFGGDHP-----DASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~a~~~~~~-----~~~~~~~~~~i~~~~~g~PL 390 (963)
++++++|+.+|-.+++.+-+...... ..-.++..+.+++.++|--.
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 99999999999999998833211111 11234567788888888654
No 54
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.64 E-value=1.9e-06 Score=98.43 Aligned_cols=178 Identities=22% Similarity=0.336 Sum_probs=108.1
Q ss_pred cccCCCcccchhhHHH---HHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 193 QSYNKDLVGVEWRIKE---IESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
|...+.+||.+..+.. +..++.. ...+.+.|+|++|+||||+|+.+++.....|. .+... ..+...+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a~-----~~~~~~i 77 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSAV-----TSGVKDL 77 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEecc-----cccHHHH
Confidence 4455779999988766 7777753 34567889999999999999999987654432 11111 1111111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE--EeCCchh--hh-cCCc
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII--TTRDKQV--LK-NCRA 342 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v--~~-~~~~ 342 (963)
++++..... ....+++.+|++|+++.. .+.+.+...+. .|..++| ||.+... .. ....
T Consensus 78 -r~ii~~~~~-----------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 78 -REVIEEARQ-----------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred -HHHHHHHHH-----------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc
Confidence 122221110 112357889999999754 45566666553 3454544 3444321 11 1122
Q ss_pred ceEEEeccCCHHHHHHHHHHhhcCCCCCC-CcHHHHHHHHHHHhcCCchhHHHh
Q 002125 343 RQIFRMKELEDADAHKLFCQCAFGGDHPD-ASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
...+++.+++.++..+++.+.+....... .-..+..+.+++.++|.+..+..+
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 36899999999999999987653211111 233566788999999998765433
No 55
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.60 E-value=6.8e-07 Score=93.65 Aligned_cols=173 Identities=18% Similarity=0.220 Sum_probs=103.2
Q ss_pred CCCccc--chhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHH
Q 002125 196 NKDLVG--VEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKEL 273 (963)
Q Consensus 196 ~~~~vG--r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 273 (963)
.++|++ .+..++++.+++.. ...+.+.|+|.+|+|||+||+.+++.........+++. ...... ....+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~------~~~~~ 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQ------ADPEV 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHH------hHHHH
Confidence 345552 34466777777642 34578899999999999999999987665554555554 211110 00111
Q ss_pred HHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH---H-HHHHHHhccC-CCCCceEEEEeCCchh---------hhc
Q 002125 274 LSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR---Q-IESLIRRLDR-LASGSRVIITTRDKQV---------LKN 339 (963)
Q Consensus 274 l~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~-~~~l~~~l~~-~~~gs~IivTTR~~~v---------~~~ 339 (963)
+ +.+.+ .-+||+||++... . .+.+...+.. ...+.++|+||+.... ...
T Consensus 85 ~----------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 85 L----------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred H----------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 1 11222 3489999997543 1 2333332221 1234578998885321 112
Q ss_pred CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhh
Q 002125 340 CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLG 396 (963)
Q Consensus 340 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~ 396 (963)
......+++.+++.+|...++...+-... ..-..+..+.+++.++|+|..+..+.
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 22245789999999999999877552211 12234567788888889888776553
No 56
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.59 E-value=1.9e-07 Score=99.53 Aligned_cols=143 Identities=23% Similarity=0.354 Sum_probs=102.8
Q ss_pred CCcccEEEcCccccccCchHHHHHHHHhhCCCceEEeC-CCCCCccchHHHHHHhhhcceeeeeeccCccch--------
Q 002125 24 SNKYGVFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASS-------- 94 (963)
Q Consensus 24 ~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s-------- 94 (963)
+...|||||||.. +....++-+.-.|.-+|++||+|- .+..|+ +...+.+.|+.++.+|.|++|+..+.
T Consensus 610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 3578999999754 346788999999999999999998 888887 46689999999999999999998764
Q ss_pred hhhHHHHHHHHHhhhcCCcEEEeEeeeccCcccccccccchhhHhhhcCCchhhhhhHHHHHHHhccccCCCCCCCchhh
Q 002125 95 GWCLDELSKILECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRYPEKMHRWANALTEAANLSGFDSDVIRPES 174 (963)
Q Consensus 95 ~~c~~El~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~e~ 174 (963)
.|.-.|++.+++|.++ ++|||-. ||+-..+. +.+ -+-+.-+....|..-.. .++.
T Consensus 688 DWVHKEl~~Afe~~KN----IiPI~D~---------------aFE~Pt~e--d~i---PnDirmi~kyNGvKWvH-dYQd 742 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQKN----IIPIFDT---------------AFEFPTKE--DQI---PNDIRMITKYNGVKWVH-DYQD 742 (832)
T ss_pred HHHHHHHHHHHHhcCC----eeeeecc---------------cccCCCch--hcC---cHHHHHHHhccCeeeeh-hhHH
Confidence 5888999999998765 9999821 11111110 011 11223344555643333 5666
Q ss_pred HHHHHHHHHHHhhhccccc
Q 002125 175 KLVEEIANEILERLEETFQ 193 (963)
Q Consensus 175 ~~i~~i~~~v~~~l~~~~~ 193 (963)
..+.++++-+...++.+.|
T Consensus 743 A~maKvvRFitGe~nRttp 761 (832)
T KOG3678|consen 743 ACMAKVVRFITGELNRTTP 761 (832)
T ss_pred HHHHHHHHHHhccccCCCC
Confidence 7788888888877776654
No 57
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=4.2e-06 Score=93.77 Aligned_cols=180 Identities=16% Similarity=0.192 Sum_probs=111.4
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCC---------------------ce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFE---------------------GS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~ 251 (963)
|...++++|-+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+..... ..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 455678999999999999988743 33567789999999999999999986532110 01
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH--HHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR--QIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gs~Iiv 329 (963)
.++. ......+.. .+++...+... -..+++-++|+|+++... .++.++..+.......++|+
T Consensus 91 ~~~~----~~~~~~v~~-ir~i~~~~~~~-----------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl 154 (363)
T PRK14961 91 IEID----AASRTKVEE-MREILDNIYYS-----------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFIL 154 (363)
T ss_pred EEec----ccccCCHHH-HHHHHHHHhcC-----------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 1110 000011111 11111111100 012455699999997654 46677776665556777777
Q ss_pred EeCCc-hhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 330 TTRDK-QVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 330 TTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
+|.+. .+.... +....+++.+++.++..+.+...+-... ..-.++.++.|++.++|.|..
T Consensus 155 ~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 155 ATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred EcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 76543 232221 2346899999999999998887663222 122345678899999998863
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.58 E-value=4.1e-09 Score=109.61 Aligned_cols=231 Identities=15% Similarity=0.163 Sum_probs=141.3
Q ss_pred ccceeeeEEecCCccCC--------CccccCCCCcEEeecCCCCcc----ccc-------cccCCCCCccEEeCcCCccc
Q 002125 554 CHVYTLELVKVGIKELP--------SSIECLSNLKKLYIVDCSKLE----SIS-------SSIFKLKSLQSIEISNCSIL 614 (963)
Q Consensus 554 ~~l~~L~~l~~~~~~lp--------~~~~~L~~L~~L~L~~~~~~~----~lp-------~~~~~L~~L~~L~Ls~n~~l 614 (963)
..+..+..++++++.+- ..+.+.++|+..+|++ -..| .+| +.+...++|++||||+|-+-
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34444555566655442 3566677788888876 2232 233 33456678999999988542
Q ss_pred cccCCCCccccCCCCccccccccccccccCcCCCcCCccccCCCCCCeeeccccccccc-------------CCcccCCC
Q 002125 615 KRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMM-------------LPYELGNL 681 (963)
Q Consensus 615 ~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~-------------~p~~~~~l 681 (963)
-. .+..+-.-+.++.+|++|.|.+|.+... .....++-
T Consensus 106 ~~-----------------------------g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~ 156 (382)
T KOG1909|consen 106 PK-----------------------------GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASK 156 (382)
T ss_pred cc-----------------------------chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCC
Confidence 11 1111112244567788888888764321 11224455
Q ss_pred CCCcEEEecCccccccC-----ccccCCCCCcEEEccCCCCCCCCC-cccccccCCCCCcEEEccCCCCCCc----Cccc
Q 002125 682 KALEMLIVDGTAIREVP-----KSLNQLALLFRLKLKNCSELDGIS-SSIFSLCMFKSLTSLEIIDCQNFMI----LPDE 751 (963)
Q Consensus 682 ~~L~~L~L~~n~l~~lp-----~~~~~l~~L~~L~L~~~~~l~~lp-~~~~~l~~l~~L~~L~l~~~~~~~~----~p~~ 751 (963)
+.|+++...+|.+..-+ ..+...+.|+.+.+..|.....-- .....+..+++|+.|+|.+|.+... +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 67888888888876433 346667888888888774321110 0111234478888888888876533 4445
Q ss_pred cCCCCCccEEEcCCCCCcc-----cCccc-CCCCCCCEEECcCCCCc-----ccCccccCCCCCCEEEeccCCC
Q 002125 752 LGNLKALETLIIDGTAMRE-----VPESL-GQLSSVKNLVLTNNNLK-----RLPESLNQLSSLEYLQLHLRSP 814 (963)
Q Consensus 752 l~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~~~~ 814 (963)
+..+++|+.|++++|.++. +-..+ ...++|+.|.|.+|.++ .+-.++...+.|..|+|++|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6677888888888888762 22222 34678888888888887 2334566678888888887655
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.57 E-value=1.2e-06 Score=87.74 Aligned_cols=174 Identities=17% Similarity=0.240 Sum_probs=99.5
Q ss_pred cccCCCcccchhhHHHHHHhHh---cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLC---TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
|...++|||.+.-++.+.-++. ...+....+.+||++|+||||||.-+++.....|. +... ..... ..++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i~k---~~dl 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAIEK---AGDL 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC--S---CHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhhhh---HHHH
Confidence 5567899999999998876665 23455778899999999999999999998776653 2221 00111 1111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCC--------CCC-----------ceEE
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRL--------ASG-----------SRVI 328 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~--------~~g-----------s~Ii 328 (963)
. .++. .+ +++-+|++|.+... .+-+.|.+....+ +++ +-|=
T Consensus 93 ~-~il~----------------~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 93 A-AILT----------------NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp H-HHHH----------------T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred H-HHHH----------------hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 1 1111 12 23557888999764 3445555544321 222 2344
Q ss_pred EEeCCchhhhcCC--cceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 329 ITTRDKQVLKNCR--ARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 329 vTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
.|||...+..... ..-+.+++..+.+|-.++..+.+.. ..-+-.++.+.+|++++.|-|--..
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHH
Confidence 6888765543332 2235689999999999999887732 2233456789999999999996443
No 60
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=1.2e-07 Score=113.76 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=64.6
Q ss_pred cCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcccc-ccCccccCCCCCcEEEccCCCCCCCCCccccc
Q 002125 649 SLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIR-EVPKSLNQLALLFRLKLKNCSELDGISSSIFS 727 (963)
Q Consensus 649 ~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~ 727 (963)
.+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+|++|.++ .+|..++++++|+.|+|++|...+.+|..+..
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 45566666777777777777777777777777777777777777776 56666777777777777777766677766543
Q ss_pred ccCCCCCcEEEccCCCCCC
Q 002125 728 LCMFKSLTSLEIIDCQNFM 746 (963)
Q Consensus 728 l~~l~~L~~L~l~~~~~~~ 746 (963)
. +.++..+++.+|....
T Consensus 513 ~--~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 513 R--LLHRASFNFTDNAGLC 529 (623)
T ss_pred c--cccCceEEecCCcccc
Confidence 1 2355667777765443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.51 E-value=2.5e-07 Score=101.42 Aligned_cols=137 Identities=26% Similarity=0.379 Sum_probs=85.9
Q ss_pred cCCCCCCeeecccccccccCCcccCCCCCCcEEEecC-ccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCC
Q 002125 655 CMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDG-TAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKS 733 (963)
Q Consensus 655 ~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~ 733 (963)
..+.+++.|++++| .+..+|. -..+|+.|.+++ +.++.+|..+ .++|+.|++++|..+..+|. +
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~---------s 113 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE---------S 113 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc---------c
Confidence 34678889999988 4566662 123588888877 5666777655 36888999988876666664 4
Q ss_pred CcEEEccCCCC--CCcCccccCCCCCccEEEcCCCC-C--cccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEE
Q 002125 734 LTSLEIIDCQN--FMILPDELGNLKALETLIIDGTA-M--REVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQ 808 (963)
Q Consensus 734 L~~L~l~~~~~--~~~~p~~l~~l~~L~~L~L~~n~-l--~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 808 (963)
|+.|++.++.. .+.+|. +|+.|.+.+++ . ..+|.. -.++|+.|++++|....+|..+. .+|+.|.
T Consensus 114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSIT 183 (426)
T ss_pred cceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEE
Confidence 55566654332 333443 56667665432 1 122211 12678899998887666665443 5788888
Q ss_pred eccCCCCC
Q 002125 809 LHLRSPRK 816 (963)
Q Consensus 809 L~~~~~~~ 816 (963)
++.+.|..
T Consensus 184 ls~n~~~s 191 (426)
T PRK15386 184 LHIEQKTT 191 (426)
T ss_pred eccccccc
Confidence 87654443
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=4.7e-06 Score=97.32 Aligned_cols=183 Identities=17% Similarity=0.187 Sum_probs=113.9
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc---------------------CCce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH---------------------FEGS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~ 251 (963)
|...+++||.+..++.|..++..+ .-.+.+.++|..|+||||+|+.+.+.+... |...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 455678999999999999998744 234566799999999999999998865311 1111
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH--HHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR--QIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gs~Iiv 329 (963)
+.++ .....++..+ ++++..... .-..++.-++|||+++... .+..|+..+.......++|+
T Consensus 91 iEID----Aas~rgVDdI-ReLIe~a~~-----------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL 154 (830)
T PRK07003 91 VEMD----AASNRGVDEM-AALLERAVY-----------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL 154 (830)
T ss_pred EEec----ccccccHHHH-HHHHHHHHh-----------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 1111 0001111111 111111100 0012445688999997654 46777776665566788888
Q ss_pred EeCCchhh-hc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch-hHHH
Q 002125 330 TTRDKQVL-KN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL-ALKV 394 (963)
Q Consensus 330 TTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~ 394 (963)
||.+..-. .. ......++++.++.++..+.+.+.+-... ..-..+..+.|++.++|... |+..
T Consensus 155 aTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 155 ATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 88775432 12 13346899999999999999888763221 22234667889999988653 4444
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.2e-05 Score=92.91 Aligned_cols=189 Identities=14% Similarity=0.130 Sum_probs=113.0
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc--cCCceEEEEecc-hhh--ccCCHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR--HFEGSYFAQNVR-EAE--ETGGIK 267 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~-~~~--~~~~~~ 267 (963)
|...++++|-+..++.|..++..+ .-.+.+.++|++|+||||+|+.+++.+.. .++..|+..... ... ...++.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 445577899999999999888753 23466799999999999999999987632 222233321100 000 000000
Q ss_pred HHHHHHHHhhhcCCC--CCCHHHHHHH-----HcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCC-chhh
Q 002125 268 DLQKELLSKLLNDRN--VWNIESQLNR-----LARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRD-KQVL 337 (963)
Q Consensus 268 ~l~~~ll~~l~~~~~--~~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~ 337 (963)
. +..... ...+..+.+. ..+++-++|+|+++.. ..+..+...+........+|++|.. ..+.
T Consensus 89 e--------l~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 89 E--------IDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred E--------ecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 0 000000 0111122221 1245668999999754 4577777776654556666655543 3332
Q ss_pred hcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 338 KNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
... .....+++.+++.++..+.+.+.+-.... ....+.+..|++.++|.+--+
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi--~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR--EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 222 23468999999999999999887633222 123466889999999988644
No 64
>PLN03150 hypothetical protein; Provisional
Probab=98.49 E-value=2.1e-07 Score=111.54 Aligned_cols=91 Identities=24% Similarity=0.301 Sum_probs=51.8
Q ss_pred CCeeecccccccccCCcccCCCCCCcEEEecCcccc-ccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEE
Q 002125 660 LTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIR-EVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLE 738 (963)
Q Consensus 660 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~ 738 (963)
++.|+|++|.+.+.+|..++++++|+.|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..+.. +++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~---L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ---LTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc---CCCCCEEE
Confidence 555666666666666666666666666666666655 55555555555555555555555555554443 45555555
Q ss_pred ccCCCCCCcCccccC
Q 002125 739 IIDCQNFMILPDELG 753 (963)
Q Consensus 739 l~~~~~~~~~p~~l~ 753 (963)
|++|.+.+.+|..++
T Consensus 497 Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 497 LNGNSLSGRVPAALG 511 (623)
T ss_pred CcCCcccccCChHHh
Confidence 555555555554443
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.48 E-value=1e-08 Score=106.75 Aligned_cols=217 Identities=18% Similarity=0.156 Sum_probs=140.0
Q ss_pred cccCCCCcEEeecCCCCcc----ccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCC
Q 002125 573 IECLSNLKKLYIVDCSKLE----SISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQ 648 (963)
Q Consensus 573 ~~~L~~L~~L~L~~~~~~~----~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~ 648 (963)
+..+..+++|+|++|+.-. .+-+.+.+.++|+..++|+-- .|-..-+-.. .+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-------------tGR~~~Ei~e----------~L~ 82 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-------------TGRLKDEIPE----------ALK 82 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-------------cCCcHHHHHH----------HHH
Confidence 4455668889998876432 244456667788888877531 1100000000 011
Q ss_pred cCCccccCCCCCCeeecccccccccCCc----ccCCCCCCcEEEecCcccccc--------------CccccCCCCCcEE
Q 002125 649 SLPSSLCMFKSLTSLEIIDCQNFMMLPY----ELGNLKALEMLIVDGTAIREV--------------PKSLNQLALLFRL 710 (963)
Q Consensus 649 ~lP~~~~~l~~L~~L~L~~~~~~~~~p~----~~~~l~~L~~L~L~~n~l~~l--------------p~~~~~l~~L~~L 710 (963)
.+-+.+-..+.|++|+||+|-+-...+. -+.++..|++|+|.+|.+... -.-+.+-++|+.+
T Consensus 83 ~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 83 MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 1222344467999999999987655443 355788999999999988622 1224556789999
Q ss_pred EccCCCCCCCCCccc--ccccCCCCCcEEEccCCCCCCc----CccccCCCCCccEEEcCCCCCc-----ccCcccCCCC
Q 002125 711 KLKNCSELDGISSSI--FSLCMFKSLTSLEIIDCQNFMI----LPDELGNLKALETLIIDGTAMR-----EVPESLGQLS 779 (963)
Q Consensus 711 ~L~~~~~l~~lp~~~--~~l~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~ 779 (963)
...+|. +..-+... ..+...+.|+.+.++.|.+... +...+..+++|+.|+|.+|-++ .+...+..++
T Consensus 163 i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 163 ICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred Eeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 888874 33333211 0122257899999888865422 3345788999999999999887 4556678888
Q ss_pred CCCEEECcCCCCcc-----cCccc-cCCCCCCEEEeccCC
Q 002125 780 SVKNLVLTNNNLKR-----LPESL-NQLSSLEYLQLHLRS 813 (963)
Q Consensus 780 ~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L~~~~ 813 (963)
+|+.|++++|.++. +-..+ ...|+|+.|.+.+|.
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 99999999998873 22333 346888888887654
No 66
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.48 E-value=3.6e-06 Score=94.04 Aligned_cols=195 Identities=16% Similarity=0.116 Sum_probs=109.7
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC-Cc-eEEEEecchhhccCCHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF-EG-SYFAQNVREAEETGGIKDLQ 270 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~l~ 270 (963)
|.....++|++..++.+.+++..+ ..+.+.++|++|+||||+|+.+++.+..+. .. .+++. ....... ....+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~~ 86 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYLV 86 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhhh
Confidence 445578999999999999988643 344678999999999999999998764332 22 23332 1111000 000000
Q ss_pred H--HHHHhhhcC--CCCCCHHHHHHHH---------cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc-
Q 002125 271 K--ELLSKLLND--RNVWNIESQLNRL---------ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK- 334 (963)
Q Consensus 271 ~--~ll~~l~~~--~~~~~~~~l~~~L---------~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~- 334 (963)
. ......... ......+.+++.+ ...+-+||+||++.. .....+...+......+++|+||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 0 000000000 0001112222211 133458999999654 23444554444445567788877543
Q ss_pred hhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 335 QVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 335 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
.+.... .....+++.+++.++..+++...+-.... .-..+.++.+++.++|.+-.+.
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 222211 22357889999999999998886632221 1234678888999988765443
No 67
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=2.1e-05 Score=87.31 Aligned_cols=192 Identities=14% Similarity=0.118 Sum_probs=112.6
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh-ccC-CceEE-E--EecchhhccCCHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS-RHF-EGSYF-A--QNVREAEETGGIK 267 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f-~~~~~-~--~~~~~~~~~~~~~ 267 (963)
|....+++|-++..+.+.+.+..+ .-...+.++|+.|+||+|+|..+++.+- +.- ..... . .... .... -
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~---c 89 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPD---H 89 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCC---C
Confidence 556678999999999999988754 2345788999999999999999998652 211 10000 0 0000 0000 0
Q ss_pred HHHHHHHHhh-------h---cCC-----CCCCHHHHHH---HH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCC
Q 002125 268 DLQKELLSKL-------L---NDR-----NVWNIESQLN---RL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLA 322 (963)
Q Consensus 268 ~l~~~ll~~l-------~---~~~-----~~~~~~~l~~---~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~ 322 (963)
...+.+.... . .+. ..-.++.+++ .+ .+++.++|+||++.. .....++..+..-.
T Consensus 90 ~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 90 PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred hHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 0000010000 0 000 0012333332 22 246779999999654 44666666665445
Q ss_pred CCceEEEEeCCch-hhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 323 SGSRVIITTRDKQ-VLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 323 ~gs~IivTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
.++.+|++|.+.. +... ......+.+.+++.++..+++..... . .. .+....+++.++|.|+....+
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~--~---~~-~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP--D---LP-DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc--c---CC-HHHHHHHHHHcCCCHHHHHHH
Confidence 6677777777653 3222 23356899999999999999977541 1 11 122367899999999865444
No 68
>PTZ00202 tuzin; Provisional
Probab=98.46 E-value=1.8e-05 Score=86.23 Aligned_cols=189 Identities=13% Similarity=0.085 Sum_probs=114.9
Q ss_pred cCCCCCCCchhh--HHHHHHHHHHHhhhcc------cccccCCCcccchhhHHHHHHhHhcC-CCCeEEEEEEccCCCCh
Q 002125 163 SGFDSDVIRPES--KLVEEIANEILERLEE------TFQSYNKDLVGVEWRIKEIESLLCTG-FAGVYILGIWGIGGIGK 233 (963)
Q Consensus 163 ~g~~~~~~~~e~--~~i~~i~~~v~~~l~~------~~~~~~~~~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGK 233 (963)
-||.+.+++.+. ...+-.++...+..++ ..|.+...|+||++++.++...|... .+..++++|.|++|+||
T Consensus 220 F~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GK 299 (550)
T PTZ00202 220 FGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGK 299 (550)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCH
Confidence 356665544432 2344445555555544 24677899999999999999999743 33457999999999999
Q ss_pred hhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCC---CHHHHHHHH-----c-CCceEEEEcC
Q 002125 234 TTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVW---NIESQLNRL-----A-RKKFLIVFDD 304 (963)
Q Consensus 234 TtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---~~~~l~~~L-----~-~k~~LlVLDd 304 (963)
|||++.+..... ...++.+.+ +..++++.++..++...... -.+.+.+.+ . +++.+||+-=
T Consensus 300 TTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l 369 (550)
T PTZ00202 300 SSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL 369 (550)
T ss_pred HHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999987543 224544432 56788889999888643321 122333332 2 6677777642
Q ss_pred C--CCHHH-HHHHHHhccCCCCCceEEEEeCCchhhhc---CCcceEEEeccCCHHHHHHHHHH
Q 002125 305 V--THPRQ-IESLIRRLDRLASGSRVIITTRDKQVLKN---CRARQIFRMKELEDADAHKLFCQ 362 (963)
Q Consensus 305 v--~~~~~-~~~l~~~l~~~~~gs~IivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~ 362 (963)
= .+..- ..+. ..+.+...-|+|++----+.+-.. .+.-..|-++.++.++|.++-.+
T Consensus 370 reg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 370 REGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred cCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 2 22221 1111 112222345777765544433111 12345799999999999887544
No 69
>PRK04195 replication factor C large subunit; Provisional
Probab=98.46 E-value=3.4e-06 Score=98.31 Aligned_cols=181 Identities=15% Similarity=0.151 Sum_probs=110.9
Q ss_pred ccccCCCcccchhhHHHHHHhHhc--CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCT--GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
.|....+++|.++.++++.+|+.. .....+.+.|+|++|+||||+|+.+++.+. ++.. -+ +. +.... ...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~i-el-na---sd~r~-~~~ 80 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVI-EL-NA---SDQRT-ADV 80 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEE-EE-cc---ccccc-HHH
Confidence 455667899999999999999873 222367899999999999999999998763 2221 11 11 11111 122
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH------HHHHHHHhccCCCCCceEEEEeCCchhh-h-c-C
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR------QIESLIRRLDRLASGSRVIITTRDKQVL-K-N-C 340 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~------~~~~l~~~l~~~~~gs~IivTTR~~~v~-~-~-~ 340 (963)
..+++........ ....++-+||+|+++... .+..+...+. ..+..||+|+.+..-. . . -
T Consensus 81 i~~~i~~~~~~~s---------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 81 IERVAGEAATSGS---------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHHHHHHhhccCc---------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh
Confidence 2222222211100 011367899999997642 2555555444 2345566666543211 1 1 1
Q ss_pred CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 341 RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
.....+++.+++.++....+...+...... -..+....|++.++|..-.+.
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 234678999999999999888776432221 234678899999998765443
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.45 E-value=7e-06 Score=90.99 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=108.5
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKE 272 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 272 (963)
|....+++|++..++.+..++..+ ..+.+.|+|.+|+||||+|+.+++.+........++. .. .+...+...+. +
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~~~~-~ 87 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGIDVIR-N 87 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchHHHH-H
Confidence 445577999999999999998643 3345799999999999999999987643221111221 10 11111111111 1
Q ss_pred HHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc-hhhhcC-CcceEEEe
Q 002125 273 LLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK-QVLKNC-RARQIFRM 348 (963)
Q Consensus 273 ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l 348 (963)
.+......... ....+-++++|+++.. +....+...+......+++|+++... .+.... .....+++
T Consensus 88 ~i~~~~~~~~~---------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 158 (319)
T PRK00440 88 KIKEFARTAPV---------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRF 158 (319)
T ss_pred HHHHHHhcCCC---------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeee
Confidence 11111110000 0123568999998654 33455665555555667787777433 121111 12346899
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 349 KELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 349 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
.+++.++....+...+-.... .-..+.+..+++.++|.+.-
T Consensus 159 ~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 159 SPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 999999999988877643222 12346688899999998764
No 71
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.43 E-value=1.5e-06 Score=97.65 Aligned_cols=174 Identities=17% Similarity=0.208 Sum_probs=101.4
Q ss_pred cCCCcccchhhHHHHHHhHhcC-----------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhcc
Q 002125 195 YNKDLVGVEWRIKEIESLLCTG-----------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET 263 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 263 (963)
....+.|+++++++|.+.+... -...+-+.|+|++|+|||++|+++++.....|-.. ..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v-----~~----- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV-----VG----- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec-----ch-----
Confidence 3457899999999998877521 12356689999999999999999998765543211 00
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHHHH-HcCCceEEEEcCCCCH-------------H---HHHHHHHhccCC--CCC
Q 002125 264 GGIKDLQKELLSKLLNDRNVWNIESQLNR-LARKKFLIVFDDVTHP-------------R---QIESLIRRLDRL--ASG 324 (963)
Q Consensus 264 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~~~--~~g 324 (963)
..+........ ...+..+.+. -...+.+|++|+++.. + .+..+...+... ..+
T Consensus 190 ---~~l~~~~~g~~-----~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 190 ---SELVRKYIGEG-----ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred ---HHHHHHhhhHH-----HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 01111110000 0001111111 2246789999998653 1 133333333222 246
Q ss_pred ceEEEEeCCchh-----hhcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 325 SRVIITTRDKQV-----LKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 325 s~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
.+||.||..... ......+..++++..+.++..++|..++.+...... .....+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 778888875432 222233568999999999999999988754332221 11456667776654
No 72
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.1e-05 Score=93.55 Aligned_cols=181 Identities=19% Similarity=0.156 Sum_probs=113.3
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC---------------------Cce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF---------------------EGS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~ 251 (963)
|....++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+.... ...
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 455678999999999999999744 2357889999999999999999988653211 111
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
+.+. .+...++..+ ++++..... .-..++.-++|+|+|+.. .....++..+.....+.++|+
T Consensus 90 iEID----AAs~~~VddI-Reli~~~~y-----------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FIL 153 (702)
T PRK14960 90 IEID----AASRTKVEDT-RELLDNVPY-----------APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLF 153 (702)
T ss_pred EEec----ccccCCHHHH-HHHHHHHhh-----------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEE
Confidence 1111 0000111111 111111100 012356678999999765 456677766665556677887
Q ss_pred EeCCchhh-hc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 330 TTRDKQVL-KN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 330 TTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
+|.+..-. .. ......+++.+++.++..+.+.+.+-... .....+....|++.++|.+..+
T Consensus 154 aTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 154 ATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred EECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 77654221 11 13346899999999999998887763322 2233456788999999977543
No 73
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=2.3e-06 Score=80.59 Aligned_cols=119 Identities=17% Similarity=0.159 Sum_probs=77.6
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLI 300 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~Ll 300 (963)
+++.|.|+.|+|||||+++++.... .-...+++. ..... ...... . +..+.+.+....++.+|
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~----~~~~~~--~---------~~~~~~~~~~~~~~~~i 65 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPR----DRRLAD--P---------DLLEYFLELIKPGKKYI 65 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHH----HHHHhh--h---------hhHHHHHHhhccCCcEE
Confidence 6899999999999999999998665 334455553 11110 000000 0 01122233333467899
Q ss_pred EEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchhhhcC------CcceEEEeccCCHHHH
Q 002125 301 VFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVLKNC------RARQIFRMKELEDADA 356 (963)
Q Consensus 301 VLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~------~~~~~~~l~~L~~~ea 356 (963)
+||++....+|......+...++..+|++|+........- +....+++.||+..|-
T Consensus 66 ~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 66 FIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 9999999888888777766556678999999987665321 2234689999998773
No 74
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.40 E-value=3.3e-06 Score=88.36 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=97.9
Q ss_pred cCCCcc-cchhhH-HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHH
Q 002125 195 YNKDLV-GVEWRI-KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKE 272 (963)
Q Consensus 195 ~~~~~v-Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 272 (963)
..++|+ |..++. ..+.++.. +....+.+.|+|.+|+|||+||+.+++.....-....++... .. ...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~~---------~~~ 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-SP---------LLA 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-Hh---------HHH
Confidence 345555 554443 44445443 223456788999999999999999998764433344455411 10 000
Q ss_pred HHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCC-CCCc-eEEEEeCCchhhh--------cC
Q 002125 273 LLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRL-ASGS-RVIITTRDKQVLK--------NC 340 (963)
Q Consensus 273 ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~-~~gs-~IivTTR~~~v~~--------~~ 340 (963)
+ .. ....-+||+||++.. ...+.+...+... ..+. .||+|++...... .+
T Consensus 85 ~-----------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 85 F-----------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred H-----------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 0 00 123347889999643 2223333332211 2334 3666666432211 22
Q ss_pred CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhh
Q 002125 341 RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHH 398 (963)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~ 398 (963)
.....++++++++++-.+++.+.+-... ..-.++..+.+++...|++..+..+...
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~ 202 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDA 202 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 2236889999999987777766442111 2223467788888899999887766444
No 75
>PLN03025 replication factor C subunit; Provisional
Probab=98.39 E-value=3.5e-06 Score=92.83 Aligned_cols=183 Identities=16% Similarity=0.190 Sum_probs=108.7
Q ss_pred ccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh-ccCCceEEEEecchhhccCCHHHHH
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQNVREAEETGGIKDLQ 270 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~ 270 (963)
.|....+++|.+..++.|..++..+ ..+.+.++|++|+||||+|+.+++.+. ..|...+.--+ .+...+... .
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~~-v 81 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGIDV-V 81 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHHH-H
Confidence 4556678899999999998887643 334577999999999999999998763 33332211111 122222222 2
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc-hhhhcC-CcceEE
Q 002125 271 KELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK-QVLKNC-RARQIF 346 (963)
Q Consensus 271 ~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~ 346 (963)
++.+......... .-.++.-++|+|+++.. .....+...+...+..+++|+++... .+.... .....+
T Consensus 82 r~~i~~~~~~~~~--------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 82 RNKIKMFAQKKVT--------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHHHHHHHhcccc--------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 2222211110000 00134668999999764 23445554444445667777777543 222111 123578
Q ss_pred EeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch
Q 002125 347 RMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 347 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
++++++.++..+.+...+-.... .-..+....+++.++|..-
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi--~i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKV--PYVPEGLEAIIFTADGDMR 195 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 99999999999988877633221 1224567888999988764
No 76
>PRK08727 hypothetical protein; Validated
Probab=98.39 E-value=6.9e-06 Score=85.93 Aligned_cols=168 Identities=17% Similarity=0.137 Sum_probs=97.7
Q ss_pred CCcccchh-hHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHH
Q 002125 197 KDLVGVEW-RIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLS 275 (963)
Q Consensus 197 ~~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~ 275 (963)
++|++... .+..+..+.. + .....+.|+|.+|+|||.||+++++...++...+.|+.. .+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-~~---------~~~~~~- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-QA---------AAGRLR- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-HH---------hhhhHH-
Confidence 45555443 3444444332 2 223569999999999999999999987766555666641 11 111111
Q ss_pred hhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH---HH-HHHHHhccC-CCCCceEEEEeCCch---------hhhcCC
Q 002125 276 KLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR---QI-ESLIRRLDR-LASGSRVIITTRDKQ---------VLKNCR 341 (963)
Q Consensus 276 ~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~~-~~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~ 341 (963)
...+.+ .+.-+||+||++... .+ +.+...+.. ...|..||+|++... +.....
T Consensus 86 ------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~ 152 (233)
T PRK08727 86 ------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLA 152 (233)
T ss_pred ------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHh
Confidence 011122 233589999996431 12 223322211 134667999998531 122222
Q ss_pred cceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 342 ARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
....+++++++.++-.+++.+++.... -.-.++....+++.++|-.-.+
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 345899999999999999998774322 1223456777777777655443
No 77
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.39 E-value=9.1e-06 Score=83.96 Aligned_cols=178 Identities=18% Similarity=0.251 Sum_probs=98.3
Q ss_pred cccchhhH--HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCC--ceEEEEecchhhccCCHHHHHHHHH
Q 002125 199 LVGVEWRI--KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDLQKELL 274 (963)
Q Consensus 199 ~vGr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll 274 (963)
++|-..+. ................+.|+|..|+|||.|.+++++.+.+..+ .++++. ..+....+.
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~ 80 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFA 80 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHH
Confidence 35654443 2233333333333456789999999999999999998766543 244553 123333344
Q ss_pred HhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH---HHH-HHHHHhccC-CCCCceEEEEeCCchh-h--------hcC
Q 002125 275 SKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP---RQI-ESLIRRLDR-LASGSRVIITTRDKQV-L--------KNC 340 (963)
Q Consensus 275 ~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR~~~v-~--------~~~ 340 (963)
..+.. ...+.+++.++. -=+|++||++.. ..| +.+...+.. ...|.+||+|++.... + ...
T Consensus 81 ~~~~~----~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl 155 (219)
T PF00308_consen 81 DALRD----GEIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRL 155 (219)
T ss_dssp HHHHT----TSHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHH
T ss_pred HHHHc----ccchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhH
Confidence 33332 344566677764 447889999653 222 222222211 1357789999965421 1 122
Q ss_pred CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 341 RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
...-++++++++.++..+++.+.+-.... .-.+++++.+++.+.+..-.|.
T Consensus 156 ~~Gl~~~l~~pd~~~r~~il~~~a~~~~~--~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 156 SWGLVVELQPPDDEDRRRILQKKAKERGI--ELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred hhcchhhcCCCCHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHhhcCCHHHHH
Confidence 34458999999999999999988843222 2334666777777665554443
No 78
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=6.6e-06 Score=95.20 Aligned_cols=184 Identities=17% Similarity=0.176 Sum_probs=112.2
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc---------------------CCce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH---------------------FEGS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~ 251 (963)
|....++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+... |...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 445678999999999999988643 334667899999999999999999865321 1111
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
+.+. .....++..+ ++++..+.. .-..+++-++|+|+++.. ...+.|+..+......+.+|.
T Consensus 91 ieid----aas~~gvd~i-r~ii~~~~~-----------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 91 IEID----AASRTGVEET-KEILDNIQY-----------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred EEee----cccccCHHHH-HHHHHHHHh-----------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 1221 0011111111 122211110 012356779999999754 457777777765555666665
Q ss_pred EeCC-chhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch-hHHHh
Q 002125 330 TTRD-KQVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL-ALKVL 395 (963)
Q Consensus 330 TTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~l 395 (963)
+|-+ ..+... ......+++.+++.++..+.+.+.+-... .....+....|++.++|.+. |+..+
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4443 333322 23347899999999999888877552211 22334567788999998764 44333
No 79
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.4e-05 Score=87.79 Aligned_cols=176 Identities=16% Similarity=0.253 Sum_probs=110.7
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc------cCCceEEEEecchhhccCCHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR------HFEGSYFAQNVREAEETGGIKDLQ 270 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~~~~~~~~~~l~ 270 (963)
.+++|-+..++.+...+..+ .-.+...++|+.|+||||+|+.++..+-. +.+...|.. .. ...-.+.. .
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~--~~~i~v~~-i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN--KKSIGVDD-I 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc--CCCCCHHH-H
Confidence 46789998899999998643 34567789999999999999999986522 223223321 00 11112222 2
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCC--CCHHHHHHHHHhccCCCCCceEEEEeCCchhh-hc-CCcceEE
Q 002125 271 KELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDV--THPRQIESLIRRLDRLASGSRVIITTRDKQVL-KN-CRARQIF 346 (963)
Q Consensus 271 ~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv--~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~-~~~~~~~ 346 (963)
+++...+.... ..+++-++|+|++ .+.+.+..++..+....+++.+|++|.+...+ .. ......+
T Consensus 79 r~~~~~~~~~p-----------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 79 RNIIEEVNKKP-----------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred HHHHHHHhcCc-----------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 22222221110 1234456666665 45566888888887777889999888765432 21 1234689
Q ss_pred EeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHH
Q 002125 347 RMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 347 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
++.+++.++..+.+.+.. . ....+.++.++.+++|.|..+..
T Consensus 148 ~~~~~~~~~~~~~l~~~~-~-----~~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKY-N-----DIKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eCCCcCHHHHHHHHHHHh-c-----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999988876553 1 11124477889999999865443
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.38 E-value=2.1e-05 Score=88.54 Aligned_cols=184 Identities=16% Similarity=0.149 Sum_probs=113.0
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc----CC-----------------ce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH----FE-----------------GS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~-----------------~~ 251 (963)
|.....++|.++.++.+.+.+..+ .-.+.+.++|++|+||||+|+.++..+... +. ..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 445678899999999999988643 234678899999999999999999875321 10 11
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
.++.. ....... ..+++...+... -..+++-++|+|+++.. .....+...+......+.+|+
T Consensus 89 ~~~~~----~~~~~~~-~~~~l~~~~~~~-----------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 89 IEIDA----ASNNGVD-DIREILDNVKYA-----------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred EEeec----cccCCHH-HHHHHHHHHhcC-----------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 11210 0001111 111222221110 01245568899998654 456677766655456677777
Q ss_pred EeCCch-hhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 330 TTRDKQ-VLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 330 TTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
+|.+.. +.... .....+++.+++.++..+.+...+-.... .-..+.+..+++.++|.|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHH
Confidence 765443 22221 22357889999999999988876632221 122466888999999998755433
No 81
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=7.3e-06 Score=97.70 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=114.1
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-C--------------------Cce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-F--------------------EGS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f--------------------~~~ 251 (963)
|....++||-+..++.|.+++..+ .-.+.+.++|+.|+||||+|+.+++.+... . ...
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 445678999999999999988643 234566899999999999999999876332 1 001
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
+++. .....++.. .+++...+. .....+++-++|||+++.. +....|+..+.......++|+
T Consensus 91 iEid----Aas~~kVDd-IReLie~v~-----------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 91 IEVD----AASRTKVDD-TRELLDNVQ-----------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EEec----cccccCHHH-HHHHHHHHH-----------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 1111 000011111 122222211 0112467779999999754 557777777665556677766
Q ss_pred EeCCc-hhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 330 TTRDK-QVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 330 TTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
+|.+. .+... ......|++.+++.++..+.+.+.+-.. ......+.+..|++.++|.|.-+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E--gI~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE--QLPFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 66544 33322 1234789999999999999888766321 12233466888999999988633
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=4.7e-05 Score=87.35 Aligned_cols=186 Identities=18% Similarity=0.169 Sum_probs=109.8
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc----C-----------------Cce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH----F-----------------EGS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f-----------------~~~ 251 (963)
|...+++||.+...+.|...+..+ .-.+.+.++|++|+||||+|+.+++.+... + ...
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 455678999998888888887643 234567899999999999999998865321 0 011
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
..+. .+...++..+ +++...... ....+++-++|+|+++.. ++.+.++..+...+....+|+
T Consensus 89 ~el~----aa~~~gid~i-R~i~~~~~~-----------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 89 IELD----AASNRGIDEI-RKIRDAVGY-----------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EEEe----CcccCCHHHH-HHHHHHHhh-----------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1111 1111222222 122211110 012345679999999755 345666666654444455554
Q ss_pred EeCC-chhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCC-chhHHHhhh
Q 002125 330 TTRD-KQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGV-PLALKVLGH 397 (963)
Q Consensus 330 TTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~l~~ 397 (963)
+|.+ ..+.... .....+++.+++.++....+.+.+..... .-..+....|++.++|- +.|+..+..
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4443 3332222 23468999999999999988877632221 22345678888888665 555555543
No 83
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.6e-05 Score=91.95 Aligned_cols=187 Identities=13% Similarity=0.115 Sum_probs=110.8
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-----C-----CceEEEEecchhhc
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-----F-----EGSYFAQNVREAEE 262 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f-----~~~~~~~~~~~~~~ 262 (963)
|...+++||-+..++.|.+.+..+ .-.+.+.++|..|+||||+|+.+++.+... . .++.. ...+.+..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C-~sC~~I~a 89 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC-RACTEIDA 89 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc-HHHHHHHc
Confidence 455678999999999999999744 234677899999999999999999865321 0 00000 00000000
Q ss_pred c--CCHHHHHHHHHHhhhcCCCCCCHHHHH---HH-----HcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEE
Q 002125 263 T--GGIKDLQKELLSKLLNDRNVWNIESQL---NR-----LARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIIT 330 (963)
Q Consensus 263 ~--~~~~~l~~~ll~~l~~~~~~~~~~~l~---~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivT 330 (963)
. .++. .+... ....++.++ +. ..++.-++|+|+++.. .....|+..+..-..+.++|++
T Consensus 90 G~hpDvi--------EIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILa 160 (700)
T PRK12323 90 GRFVDYI--------EMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160 (700)
T ss_pred CCCCcce--------Eeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEE
Confidence 0 0000 00000 001112111 11 1356679999999765 4577777776554556666555
Q ss_pred eCC-chhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 331 TRD-KQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 331 TR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
|.+ ..+.... .....++++.++.++..+.+.+.+-... .....+..+.|++.++|.|...
T Consensus 161 Ttep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--i~~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--IAHEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred eCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 544 4443222 2346899999999999998887663221 1223355688999999998643
No 84
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.34 E-value=5.3e-06 Score=80.04 Aligned_cols=123 Identities=22% Similarity=0.156 Sum_probs=70.8
Q ss_pred ccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhc
Q 002125 200 VGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLN 279 (963)
Q Consensus 200 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 279 (963)
+|++..++++...+... ..+.+.|+|.+|+|||++|+++++.+...-..++++. .............. ...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~-~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGLVVAELF-GHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhhHHHHHh-hhh-----
Confidence 47888999998888642 3467889999999999999999997754334444443 21111110000000 000
Q ss_pred CCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHH---HhccCC---CCCceEEEEeCCch
Q 002125 280 DRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLI---RRLDRL---ASGSRVIITTRDKQ 335 (963)
Q Consensus 280 ~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~---~~l~~~---~~gs~IivTTR~~~ 335 (963)
............++.++|+||++.. .....+. ...... ..+.+||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111223456789999999864 2223333 332221 36788888888653
No 85
>PRK05642 DNA replication initiation factor; Validated
Probab=98.33 E-value=1.2e-05 Score=84.15 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=90.8
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFL 299 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~L 299 (963)
...+.|+|..|+|||.|++++++.+..+-..++|+.. .+ +... ...+.+.+++-. +
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~---------~~~~-------------~~~~~~~~~~~d-~ 100 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AE---------LLDR-------------GPELLDNLEQYE-L 100 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HH---------HHhh-------------hHHHHHhhhhCC-E
Confidence 3678999999999999999999877655455666651 11 1110 012233333333 6
Q ss_pred EEEcCCCCH---HHHH-HHHHhccC-CCCCceEEEEeCCchh---------hhcCCcceEEEeccCCHHHHHHHHHHhhc
Q 002125 300 IVFDDVTHP---RQIE-SLIRRLDR-LASGSRVIITTRDKQV---------LKNCRARQIFRMKELEDADAHKLFCQCAF 365 (963)
Q Consensus 300 lVLDdv~~~---~~~~-~l~~~l~~-~~~gs~IivTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 365 (963)
||+||+... .+|+ .+...+.. ...|.+||+|++.... ...+....++++++++.++-.+.+..++.
T Consensus 101 LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 101 VCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred EEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 788999632 2332 23333321 1356788998875321 11222346789999999999999986664
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 366 GGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
... -.-.++....+++.+.|..-++..+
T Consensus 181 ~~~--~~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 181 RRG--LHLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HcC--CCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 322 1122466777777777776555443
No 86
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.32 E-value=1.5e-05 Score=83.54 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=97.2
Q ss_pred Ccccchh-hHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHh
Q 002125 198 DLVGVEW-RIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSK 276 (963)
Q Consensus 198 ~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 276 (963)
.++|-.. .+..+.++... ...+.+.|+|++|+|||+|++.+++.....-..+.|+.. ... .....+
T Consensus 24 f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~~------~~~~~~---- 90 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DKR------AWFVPE---- 90 (235)
T ss_pred cccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HHH------hhhhHH----
Confidence 3346322 33344444432 234578999999999999999999977655444556541 110 000011
Q ss_pred hhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH---HHHHH-HHHhccCC-CCC-ceEEEEeCCch---------hhhcCC
Q 002125 277 LLNDRNVWNIESQLNRLARKKFLIVFDDVTHP---RQIES-LIRRLDRL-ASG-SRVIITTRDKQ---------VLKNCR 341 (963)
Q Consensus 277 l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~~-l~~~l~~~-~~g-s~IivTTR~~~---------v~~~~~ 341 (963)
+.+.+.. .-+|++||+... .+|+. +...+... ..| .++|+||+... ....+.
T Consensus 91 ------------~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~ 157 (235)
T PRK08084 91 ------------VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLD 157 (235)
T ss_pred ------------HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHh
Confidence 1111211 237899999653 23322 22222111 233 47999998542 222334
Q ss_pred cceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 342 ARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 342 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
...++++++++.++-.+++.+++.... -.-.++....+++.+.|..-++..+
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 456899999999999999987663321 2233566778888887776555443
No 87
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.31 E-value=1.8e-06 Score=94.79 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=11.4
Q ss_pred cCCCCCccEEeCcCC
Q 002125 597 IFKLKSLQSIEISNC 611 (963)
Q Consensus 597 ~~~L~~L~~L~Ls~n 611 (963)
+..+.+++.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c 62 (426)
T PRK15386 48 IEEARASGRLYIKDC 62 (426)
T ss_pred HHHhcCCCEEEeCCC
Confidence 344678889999887
No 88
>PRK09087 hypothetical protein; Validated
Probab=98.30 E-value=1.3e-05 Score=83.07 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=86.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFL 299 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~L 299 (963)
.+.+.|||.+|+|||+|++.++.... ..|+.. ..+..++...+ .+ -+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~~----------------~~--~~ 90 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANAA----------------AE--GP 90 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHhh----------------hc--Ce
Confidence 46689999999999999998886532 224431 01111111111 11 27
Q ss_pred EEEcCCCC----HHHHHHHHHhccCCCCCceEEEEeCCc---------hhhhcCCcceEEEeccCCHHHHHHHHHHhhcC
Q 002125 300 IVFDDVTH----PRQIESLIRRLDRLASGSRVIITTRDK---------QVLKNCRARQIFRMKELEDADAHKLFCQCAFG 366 (963)
Q Consensus 300 lVLDdv~~----~~~~~~l~~~l~~~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 366 (963)
|++||++. .+.+-.+..... ..|..||+|++.. .....+....++++++++.++-.+++.+.+-.
T Consensus 91 l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 91 VLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 88899953 233333333322 3467899988742 23333445578999999999999999988733
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 367 GDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
. .-.-.++....|++.+.|..-++..+
T Consensus 169 ~--~~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 169 R--QLYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred c--CCCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 2 12233567788888888777665543
No 89
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=6.2e-07 Score=72.02 Aligned_cols=56 Identities=34% Similarity=0.634 Sum_probs=28.6
Q ss_pred CccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCcccC-ccccCCCCCCEEEeccC
Q 002125 757 ALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRLP-ESLNQLSSLEYLQLHLR 812 (963)
Q Consensus 757 ~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~ 812 (963)
+|++|++++|+++.+|. .|..+++|+.|+|++|+++.+| ..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555555555542 3455555555555555555554 23455555555555543
No 90
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=5.1e-07 Score=72.54 Aligned_cols=60 Identities=33% Similarity=0.524 Sum_probs=54.4
Q ss_pred CCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCC
Q 002125 732 KSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNL 791 (963)
Q Consensus 732 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l 791 (963)
++|+.|++++|.+....+..|.++++|++|++++|.++.+|. .|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999998887777889999999999999999998874 789999999999999975
No 91
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.28 E-value=8.6e-06 Score=97.76 Aligned_cols=172 Identities=26% Similarity=0.385 Sum_probs=102.2
Q ss_pred cccCCCcccchhhHH---HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 193 QSYNKDLVGVEWRIK---EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
|...++|+|.+..+. .+.+.+.. +....+.++|++|+||||||+.+++.....|. .+... ..++..+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~di 93 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKDL 93 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHHH
Confidence 445567899998874 46666653 34566789999999999999999987665542 12110 0111111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHH--cCCceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEEE--eCCch--hhhcC-
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRL--ARKKFLIVFDDVTH--PRQIESLIRRLDRLASGSRVIIT--TRDKQ--VLKNC- 340 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IivT--TR~~~--v~~~~- 340 (963)
++.+.. ..+.+ .+++.+|||||++. ..+.+.+.+.+. .|..++|+ |.+.. +....
T Consensus 94 -r~~i~~------------a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 94 -RAEVDR------------AKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred -HHHHHH------------HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhh
Confidence 111111 11111 24677999999964 455666765543 35555553 44331 11111
Q ss_pred CcceEEEeccCCHHHHHHHHHHhhcC-----CCCCCCcHHHHHHHHHHHhcCCch
Q 002125 341 RARQIFRMKELEDADAHKLFCQCAFG-----GDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~a~~-----~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
....++.+++++.++..+++.+.+-. +.....-.++....|++.+.|..-
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 12357999999999999998876531 011122335667888888888754
No 92
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=6.7e-05 Score=84.68 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=109.7
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCC-c--eEEEEecchhhccCCHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFE-G--SYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~--~~~~~~~~~~~~~~~~~~l 269 (963)
|....++||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+...-. . .|... ..-..+
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~sC~~i 84 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TSCLEI 84 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cHHHHH
Confidence 4556789999999999999887542 2356889999999999999999986532210 0 00000 000000
Q ss_pred HHHHHHh---hhcCC--CCCCHHHHHHH-----HcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEe-CCchh
Q 002125 270 QKELLSK---LLNDR--NVWNIESQLNR-----LARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITT-RDKQV 336 (963)
Q Consensus 270 ~~~ll~~---l~~~~--~~~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~~v 336 (963)
....... +.... ..+.+..+.+. ..++.-++|+|+++.. +.+.+|+..+........+|.+| ....+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 0000000 00000 00111111111 2356679999999754 45777776665444455555444 43444
Q ss_pred hhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch
Q 002125 337 LKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
.... .....|.+.+++.++..+.+.+.+-... ..-..+....|++.++|.+.
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHH
Confidence 3222 2346799999999999998887763221 22235668899999999985
No 93
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.27 E-value=3.6e-05 Score=88.20 Aligned_cols=164 Identities=15% Similarity=0.193 Sum_probs=99.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccC--CceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCc
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHF--EGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKK 297 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~ 297 (963)
...+.|+|..|+|||+|++++++.+.... ..++++. ...+...+...+.... ...+.+++.++. .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~--~~~~~~~~~~~~-~ 207 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH--KEIEQFKNEICQ-N 207 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh--hHHHHHHHHhcc-C
Confidence 35688999999999999999999765433 2334443 1233344443333210 123344444543 4
Q ss_pred eEEEEcCCCCH----HHHHHHHHhccC-CCCCceEEEEeCCc---------hhhhcCCcceEEEeccCCHHHHHHHHHHh
Q 002125 298 FLIVFDDVTHP----RQIESLIRRLDR-LASGSRVIITTRDK---------QVLKNCRARQIFRMKELEDADAHKLFCQC 363 (963)
Q Consensus 298 ~LlVLDdv~~~----~~~~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 363 (963)
-+||+||+... ...+.+...+.. ...|..||+|+... .+.......-++++++++.++-.+++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 57889999543 222333332221 13455788887643 12222234457889999999999999988
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhh
Q 002125 364 AFGGDHPDASHIELTDKAIKYAQGVPLALKVLG 396 (963)
Q Consensus 364 a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~ 396 (963)
+-.......-.++....|++.++|.|-.+..+.
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 733221112346788999999999998776554
No 94
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.26 E-value=6e-06 Score=86.38 Aligned_cols=177 Identities=18% Similarity=0.307 Sum_probs=103.4
Q ss_pred cccCCCcccchhhHHH---HHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 193 QSYNKDLVGVEWRIKE---IESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
|....++||.+..+.+ |.+++ +.+..+.+.+||++|+||||||+.+...-+.+- ..|+.-........+++.+
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~i 209 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDI 209 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHH
Confidence 3344566666655533 33444 335677888999999999999999988544332 3455421111222333333
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEE--EeCCchhhh---cCCc
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTH--PRQIESLIRRLDRLASGSRVII--TTRDKQVLK---NCRA 342 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v~~---~~~~ 342 (963)
.++. .+ ...+.++|.+|++|.|.. ..|-+.+++.. ..|.-++| ||.++...- ....
T Consensus 210 fe~a----q~----------~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 210 FEQA----QN----------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred HHHH----HH----------HHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhc
Confidence 3322 21 133567899999999954 34445555543 45665554 777764421 1234
Q ss_pred ceEEEeccCCHHHHHHHHHHhh--cCC-CC---CCC-----cHHHHHHHHHHHhcCCch
Q 002125 343 RQIFRMKELEDADAHKLFCQCA--FGG-DH---PDA-----SHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~a--~~~-~~---~~~-----~~~~~~~~i~~~~~g~PL 390 (963)
..++.+++|..++...++.+-. .+. .. +-+ -...+.+-++..|+|-..
T Consensus 273 C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 5689999999999999988733 111 11 111 133455666677777653
No 95
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.7e-05 Score=85.18 Aligned_cols=277 Identities=18% Similarity=0.180 Sum_probs=155.7
Q ss_pred cccCCCcccchhhHHHHHHhHhc--CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCc--eEEEEecchhhccCCHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT--GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEG--SYFAQNVREAEETGGIKD 268 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~ 268 (963)
...++.+.+|+.+++++...|.. .+..+.-+.|+|.+|+|||+.++.+++++.+.... .+++.+ .......+
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc----~~~~t~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINC----LELRTPYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEee----eeCCCHHH
Confidence 34456699999999999988872 22233348999999999999999999988766443 466642 33456677
Q ss_pred HHHHHHHhhhcCCCC-C----CHHHHHHHHc--CCceEEEEcCCCCHHH-----HHHHHHhccCCCCCceE--EEEeCCc
Q 002125 269 LQKELLSKLLNDRNV-W----NIESQLNRLA--RKKFLIVFDDVTHPRQ-----IESLIRRLDRLASGSRV--IITTRDK 334 (963)
Q Consensus 269 l~~~ll~~l~~~~~~-~----~~~~l~~~L~--~k~~LlVLDdv~~~~~-----~~~l~~~l~~~~~gs~I--ivTTR~~ 334 (963)
+..+++.++...... . ..+.+.+.+. ++.+++|||+++.... +-.|....... .++| |..+-+.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 788888877533222 1 1234445543 5789999999975432 22333222211 3443 3333333
Q ss_pred hhhh--------cCCcceEEEeccCCHHHHHHHHHHhh---cCCCCCCCcHHHHHHHHHHHhcCC-chhHHHhhhh--cC
Q 002125 335 QVLK--------NCRARQIFRMKELEDADAHKLFCQCA---FGGDHPDASHIELTDKAIKYAQGV-PLALKVLGHH--LC 400 (963)
Q Consensus 335 ~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~l~~~--L~ 400 (963)
.... ..+. ..+..++-+.+|-.+.+..++ |......+...+++..++...+|- -.|+..+-.+ ++
T Consensus 167 ~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 167 KFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 2221 2222 247789999999999998876 444455555566666666666653 2344333221 11
Q ss_pred C------CCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCChhhHHHHHhhhcccCccChhH----HHHHHhhcCC---Ch
Q 002125 401 G------RSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLEGEHRDE----VTSFFDASGF---QA 467 (963)
Q Consensus 401 ~------~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~~~~----l~~~~~~~~~---~~ 467 (963)
+ .+.+.-..+... --.....-....|+.++|..+..++..-.+..... ...+-...+. .-
T Consensus 246 e~~~~~~v~~~~v~~a~~~-------~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~ 318 (366)
T COG1474 246 EREGSRKVSEDHVREAQEE-------IERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRF 318 (366)
T ss_pred HhhCCCCcCHHHHHHHHHH-------hhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHH
Confidence 1 011111111111 01223344478899888887766665433333222 2222222222 12
Q ss_pred hhhHHhhhcccCceee
Q 002125 468 KIELSVLEGKSLITCF 483 (963)
Q Consensus 468 ~~~l~~L~~~sLi~~~ 483 (963)
...+.+|...+++...
T Consensus 319 ~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 319 SDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHhcCeEEee
Confidence 3446667777776644
No 96
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=9.5e-06 Score=94.82 Aligned_cols=181 Identities=19% Similarity=0.164 Sum_probs=109.6
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC---------------------Cce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF---------------------EGS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~ 251 (963)
|....++||.+..++.|..++..+ .-.+.+.++|..|+||||+|+.++..+...- ...
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 455678999999999999998753 2346789999999999999999988642211 001
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH--HHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR--QIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gs~Iiv 329 (963)
+.+. .....++. ..++++..... .-..+++-++|+|+++... ....|+..+.......++|+
T Consensus 91 lEid----aAs~~gVd-~IRelle~a~~-----------~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fIL 154 (709)
T PRK08691 91 LEID----AASNTGID-NIREVLENAQY-----------APTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (709)
T ss_pred EEEe----ccccCCHH-HHHHHHHHHHh-----------hhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEE
Confidence 1111 00011111 11111111100 0012466789999997654 35566666554445667777
Q ss_pred EeCCch-hhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 330 TTRDKQ-VLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 330 TTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
+|.+.. +... .+....+++.+++.++..+.+.+.+-... ..-..+.+..|++.++|.+.-+
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg--i~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK--IAYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHhCCCHHHH
Confidence 765442 2211 12335688889999999998887763222 1223456789999999988543
No 97
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.6e-05 Score=87.25 Aligned_cols=176 Identities=15% Similarity=0.145 Sum_probs=106.8
Q ss_pred CCcccchhhHHHHHHhHhcCCC--------CeEEEEEEccCCCChhhHHHHHHHHHhccC--------------------
Q 002125 197 KDLVGVEWRIKEIESLLCTGFA--------GVYILGIWGIGGIGKTTIADAVFNKISRHF-------------------- 248 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-------------------- 248 (963)
++++|-+.-++.|.+.+..+.. -.+.+.++|++|+|||++|+.++..+--..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999999999998875431 356788999999999999999988642221
Q ss_pred CceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCce
Q 002125 249 EGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSR 326 (963)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~ 326 (963)
+...++... .....+.. .+++...+... -..+++-++|+|+++.. .....++..+....++..
T Consensus 85 pD~~~i~~~---~~~i~i~~-iR~l~~~~~~~-----------p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~ 149 (394)
T PRK07940 85 PDVRVVAPE---GLSIGVDE-VRELVTIAARR-----------PSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTV 149 (394)
T ss_pred CCEEEeccc---cccCCHHH-HHHHHHHHHhC-----------cccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCe
Confidence 111222100 00011111 11222111110 01245558888999764 344566666655456777
Q ss_pred EEEEeCCc-hhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHH
Q 002125 327 VIITTRDK-QVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 327 IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
+|++|.+. .+.... .....+.+.+++.++..+.+.... + ...+.+..++..++|.|.....
T Consensus 150 fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~------~~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 150 WLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G------VDPETARRAARASQGHIGRARR 212 (394)
T ss_pred EEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C------CCHHHHHHHHHHcCCCHHHHHH
Confidence 77766664 333222 234689999999999998886432 1 1135578889999999965433
No 98
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2.6e-05 Score=89.76 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=111.1
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCC-------ceEEEE----------
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFE-------GSYFAQ---------- 255 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-------~~~~~~---------- 255 (963)
|....++||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+...-. ..|...
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 455678899999999998877643 23467889999999999999999986532110 000000
Q ss_pred --ecch--hhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 256 --NVRE--AEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 256 --~~~~--~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
++.+ .....++..+. +++..... .-..+++-++|+|+++.. ..+..|...+....+.+.+|+
T Consensus 96 h~Dv~eidaas~~~vd~Ir-~iie~a~~-----------~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~ 163 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIR-RIIESAEY-----------KPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIF 163 (507)
T ss_pred CCcEEEeeccCCCCHHHHH-HHHHHHHh-----------ccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEE
Confidence 0000 00011111111 11111100 012356778999999864 457777776665456666654
Q ss_pred -EeCCchhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 330 -TTRDKQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 330 -TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
||+...+.... .....+++.+++.+|..+.+.+.+-... ..-..+....|++.++|.+.-
T Consensus 164 aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg--i~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 164 ATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN--LKTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred EeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 55544443322 2346799999999999999988774322 122345677899999998743
No 99
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.22 E-value=1.7e-07 Score=107.46 Aligned_cols=40 Identities=33% Similarity=0.512 Sum_probs=19.7
Q ss_pred CCEEECcCCCCcccCccccCCCCCCEEEeccCCCCCCcee
Q 002125 781 VKNLVLTNNNLKRLPESLNQLSSLEYLQLHLRSPRKLTSL 820 (963)
Q Consensus 781 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~~~L~~L 820 (963)
|+.+++++|.+..++..+..+..+..|++..|....+..+
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~ 273 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGL 273 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhccccccccc
Confidence 4555555555555544444555555555554444444333
No 100
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=4.9e-05 Score=83.95 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=113.8
Q ss_pred ccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc----CCceEEEEecchhhccCCHH
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH----FEGSYFAQNVREAEETGGIK 267 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 267 (963)
.|.....++|-++..+.+...+..+ .-...+.|+|..|+||||+|..+++.+-.+ +....... ..+--
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~-------~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD-------PDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC-------CCCCC
Confidence 3556688999999999999998754 345678899999999999999999876432 11110000 00000
Q ss_pred HHHHHHHHh-------hh----cCC----CCCCHHH---HHHHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCC
Q 002125 268 DLQKELLSK-------LL----NDR----NVWNIES---QLNRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLA 322 (963)
Q Consensus 268 ~l~~~ll~~-------l~----~~~----~~~~~~~---l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~ 322 (963)
...+.+... +. ... ..-.++. +.+.+ .+++-++|+|+++.. .....++..+....
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 111111111 00 000 0011232 22332 346678999999754 34566666655444
Q ss_pred CCceEEEEe-CCchhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 323 SGSRVIITT-RDKQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 323 ~gs~IivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
.+..+|++| +...+.... .....+++.+++.++..+++...... .. -..+.+..+++.++|.|.....+
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~---~~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS---QG-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc---cC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 555555544 443333222 23468999999999999999874321 11 22455788999999999855443
No 101
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.21 E-value=1.5e-05 Score=89.91 Aligned_cols=172 Identities=16% Similarity=0.238 Sum_probs=97.7
Q ss_pred cCCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhcc
Q 002125 195 YNKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET 263 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 263 (963)
....+.|++++++++.+.+.. +-..++-|.++|++|+|||++|+++++.....|- .+. ..
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~~----- 199 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-GS----- 199 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-hH-----
Confidence 345789999999999887642 1234567899999999999999999987653321 111 10
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHHHH-HcCCceEEEEcCCCCH-------------HH---HHHHHHhccCC--CCC
Q 002125 264 GGIKDLQKELLSKLLNDRNVWNIESQLNR-LARKKFLIVFDDVTHP-------------RQ---IESLIRRLDRL--ASG 324 (963)
Q Consensus 264 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~-------------~~---~~~l~~~l~~~--~~g 324 (963)
.+.... .+.. ...+..+.+. -...+.+|++||++.. +. +..+...+... ..+
T Consensus 200 ----~l~~~~----~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 200 ----ELVQKF----IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred ----HHhHhh----ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 111000 0000 0001111111 1346789999999753 11 22222222221 235
Q ss_pred ceEEEEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHHHhhcCCCCCC-CcHHHHHHHHHHHhcCC
Q 002125 325 SRVIITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFCQCAFGGDHPD-ASHIELTDKAIKYAQGV 388 (963)
Q Consensus 325 s~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~g~ 388 (963)
.+||.||........ ...+..++++..+.++..++|+.+..+..... .. ...+++.+.|.
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 667777765433221 12356799999999999999988774332221 12 34555666654
No 102
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=8.6e-05 Score=84.82 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=111.9
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc---------------------cCCce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR---------------------HFEGS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------------~f~~~ 251 (963)
|....++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-- .+..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 455678999999999998888643 23457889999999999999999875421 11122
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
+.++. +...++..+ ++++...... -..++.-++|+|+++.. +....|+..+..-.+.+++|+
T Consensus 88 ~eida----as~~~vddI-R~Iie~~~~~-----------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 88 IEIDA----ASNTSVDDI-KVILENSCYL-----------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred EEEec----ccCCCHHHH-HHHHHHHHhc-----------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 22221 111122221 1222211100 01245668999999654 446777777665566777776
Q ss_pred EeCC-chhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 330 TTRD-KQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 330 TTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
+|.+ +.+.... .....+++.+++.++..+.+.+.+-... ..-..+.+..|++.++|.+..
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg--i~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN--IEHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 6643 3333222 2346899999999999999888773322 222345678899999988753
No 103
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.19 E-value=8e-05 Score=75.36 Aligned_cols=160 Identities=16% Similarity=0.190 Sum_probs=95.9
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc---------------------CCceEEEEecchhhccCCH
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH---------------------FEGSYFAQNVREAEETGGI 266 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 266 (963)
.+.+.+..+ .-.+.+.++|+.|+|||++|+.+...+... ++...++... ....+.
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~~~ 78 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSIKV 78 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcCCH
Confidence 344555432 234678899999999999999999876431 1112222110 001111
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc-hhhhcC-Cc
Q 002125 267 KDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK-QVLKNC-RA 342 (963)
Q Consensus 267 ~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~ 342 (963)
+..+++...+... -..+.+-++|+||++.. +..+.++..+....+.+.+|++|++. .+.... ..
T Consensus 79 -~~i~~i~~~~~~~-----------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr 146 (188)
T TIGR00678 79 -DQVRELVEFLSRT-----------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR 146 (188)
T ss_pred -HHHHHHHHHHccC-----------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh
Confidence 1111222221110 01245668999999654 34677777776656677787777654 222211 23
Q ss_pred ceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 343 RQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
...+++.+++.++..+.+.+. + -..+.+..+++.++|.|..
T Consensus 147 ~~~~~~~~~~~~~~~~~l~~~--g------i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 147 CQVLPFPPLSEEALLQWLIRQ--G------ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred cEEeeCCCCCHHHHHHHHHHc--C------CCHHHHHHHHHHcCCCccc
Confidence 468999999999999988776 1 1235688999999999853
No 104
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=3.5e-05 Score=90.69 Aligned_cols=181 Identities=15% Similarity=0.144 Sum_probs=111.4
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC---------------------Cce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF---------------------EGS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~ 251 (963)
|....++||-+.-++.|...+..+. -.+.+.++|..|+||||+|+.++..+-... ...
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 4556789999999999999887542 345678999999999999999988653211 111
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
..+.. ....++.. .+++...+. ..-..+++-++|+|+++.. .....|+..+.......++|.
T Consensus 91 ieida----as~~~Vdd-iR~li~~~~-----------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL 154 (647)
T PRK07994 91 IEIDA----ASRTKVED-TRELLDNVQ-----------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 (647)
T ss_pred eeecc----cccCCHHH-HHHHHHHHH-----------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 11110 00011111 111211111 0112456779999999754 456777766655455666665
Q ss_pred EeCCc-hhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 330 TTRDK-QVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 330 TTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
+|.+. .+... ......|++.+++.++..+.+.+.+-... .....+....|++.++|.+...
T Consensus 155 ~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDA 217 (647)
T ss_pred ecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 55544 33322 22357899999999999998887652211 1223455778999999988643
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.7e-05 Score=86.37 Aligned_cols=194 Identities=15% Similarity=0.132 Sum_probs=110.3
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc--CCceEEEEecchhhccCCHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH--FEGSYFAQNVREAEETGGIKDLQ 270 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~ 270 (963)
|....+++|.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+... ++..-|...... ..+.-...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~---~c~~c~~c 87 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE---PCGECESC 87 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC---CCCCCHHH
Confidence 455678999999999999988643 234568899999999999999999876321 100000000000 00000000
Q ss_pred HHHHHh-------hhcCCC--CCCHHHHHHHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEe-CC
Q 002125 271 KELLSK-------LLNDRN--VWNIESQLNRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITT-RD 333 (963)
Q Consensus 271 ~~ll~~-------l~~~~~--~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~ 333 (963)
+.+... +.+... .+.+..+.+.+ .+.+-++|+|+++.. +.++.+...+....+.+.+|++| +.
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 000000 000000 01111222222 245668899999754 45777777766555677766655 43
Q ss_pred chhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 334 KQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 334 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
..+.... .....+++.+++.++..+.+...+-.. ...-..+.+..+++.++|.+--+
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~--g~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE--GISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHH
Confidence 3333221 123578899999999988887765221 12233466889999999987533
No 106
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3e-05 Score=89.83 Aligned_cols=179 Identities=16% Similarity=0.151 Sum_probs=106.4
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCC---------------------ce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFE---------------------GS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~ 251 (963)
|....+++|.+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+...-. ..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Di 90 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDI 90 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCce
Confidence 556678999999999999988643 33467889999999999999999987532100 01
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
.++.. ....++..+ +.+...+.. .-..+++-++|+|+++.. .....|+..+........+|+
T Consensus 91 ieIda----as~igVd~I-ReIi~~~~~-----------~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL 154 (605)
T PRK05896 91 VELDA----ASNNGVDEI-RNIIDNINY-----------LPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIF 154 (605)
T ss_pred EEecc----ccccCHHHH-HHHHHHHHh-----------chhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 11100 000111111 111111100 001123446999999753 456677766554445566655
Q ss_pred Ee-CCchhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch
Q 002125 330 TT-RDKQVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 330 TT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
+| ....+... ......+++.+++.++....+...+-... ..-..+.+..+++.++|.+.
T Consensus 155 ~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg--i~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 155 ATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK--IKIEDNAIDKIADLADGSLR 215 (605)
T ss_pred ECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHH
Confidence 55 33333322 22346889999999999988887663221 11224557888999999764
No 107
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.16 E-value=1.5e-05 Score=75.49 Aligned_cols=109 Identities=22% Similarity=0.306 Sum_probs=69.7
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhcc-----CCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC-CCHH----H
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRH-----FEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV-WNIE----S 288 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~----~ 288 (963)
+.+++.|+|.+|+|||++++.+++..... -..++|+. .........+...++..+...... ...+ .
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 34689999999999999999999876543 23445554 233347788888888888776555 3333 4
Q ss_pred HHHHHcCCc-eEEEEcCCCCH---HHHHHHHHhccCCCCCceEEEEeCC
Q 002125 289 QLNRLARKK-FLIVFDDVTHP---RQIESLIRRLDRLASGSRVIITTRD 333 (963)
Q Consensus 289 l~~~L~~k~-~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~ 333 (963)
+.+.+...+ .+||+|+++.. +.++.+..... ..+.+||+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 455555444 59999999765 33555544333 667788887775
No 108
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.00011 Score=85.25 Aligned_cols=181 Identities=15% Similarity=0.158 Sum_probs=109.8
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc---------------------CCce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH---------------------FEGS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~ 251 (963)
|....++||-+.-++.|..++..+ .-.+.+.++|+.|+||||+|+.++..+-.. |...
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 455678999999999999999743 234567899999999999999999865211 1111
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
..+. .....++..+ ++++..+... -..++.-++|+|+|+.. .....++..+......+++|+
T Consensus 91 ~eid----aas~~~v~~i-R~l~~~~~~~-----------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 91 FEVD----AASRTKVEDT-RELLDNIPYA-----------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEEc----ccccCCHHHH-HHHHHHHhhc-----------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 2221 0111122221 1222221110 01245668999999764 456677766665556777776
Q ss_pred EeCCc-hhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 330 TTRDK-QVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 330 TTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
+|.+. .+.... .....+++++++.++..+.+.+.+-.... .-..+....|++.++|.+.-+
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi--~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV--EFENAALDLLARAANGSVRDA 217 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHH
Confidence 65443 332221 22357889999999988776666522221 123355778889999987543
No 109
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=0.00014 Score=85.17 Aligned_cols=184 Identities=17% Similarity=0.183 Sum_probs=110.7
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC-----Cc-----------------
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF-----EG----------------- 250 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~----------------- 250 (963)
|....++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.++..+.... ++
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 445678999999999999998743 2345678999999999999999998653211 00
Q ss_pred -eEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceE
Q 002125 251 -SYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRV 327 (963)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~I 327 (963)
++.++ .....++..+ +++...+.. .-..+++-++|+|+++.. .....|+..+........+
T Consensus 88 dvieid----aas~~gvd~i-Rel~~~~~~-----------~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~f 151 (584)
T PRK14952 88 DVVELD----AASHGGVDDT-RELRDRAFY-----------APAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIF 151 (584)
T ss_pred eEEEec----cccccCHHHH-HHHHHHHHh-----------hhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEE
Confidence 00110 0000111111 111111100 001245668899999653 4567777776655566666
Q ss_pred EEEe-CCchhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch-hHHHh
Q 002125 328 IITT-RDKQVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL-ALKVL 395 (963)
Q Consensus 328 ivTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~l 395 (963)
|++| ....+... ......+++..++.++..+.+.+.+-.... .-..+.+..|++.++|.+. |+..+
T Consensus 152 IL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 152 IFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred EEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6555 44444332 223468999999999999888776632221 1224567788899999875 33333
No 110
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4.4e-05 Score=89.66 Aligned_cols=188 Identities=13% Similarity=0.149 Sum_probs=109.1
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC----CceEEEEecchhhccCCHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF----EGSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~~~~~~~~~~~~~~ 268 (963)
|...+++||-+.-++.|.+++..+ .-.+.+.++|..|+||||+|+.++..+--.- ..... . ..+.-.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~-~-------pCg~C~ 82 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA-T-------PCGVCQ 82 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC-C-------CCCccH
Confidence 445678999999889999998754 3346778999999999999999987652100 00000 0 000000
Q ss_pred HHHHHHH-------hhhcCCCCCCHHHHHHHH--------cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEe
Q 002125 269 LQKELLS-------KLLNDRNVWNIESQLNRL--------ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITT 331 (963)
Q Consensus 269 l~~~ll~-------~l~~~~~~~~~~~l~~~L--------~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT 331 (963)
..+.+.. .+.. .....++.+++.+ .++.-++|+|+|+.. .....++..+..-....++|++|
T Consensus 83 ~C~~i~~g~h~D~~elda-as~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDA-ASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHcCCCCceeecCc-ccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 0000000 0000 0001122222221 244568999999764 44667777665545566666555
Q ss_pred CC-chhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 332 RD-KQVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 332 R~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
.+ ..+... ......+++++++.++..+.+.+.+-.... ....+..+.|++.++|.+.-+
T Consensus 162 td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi--~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 162 TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV--PAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 43 333322 233468999999999999988877632221 223456788899999877543
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.0001 Score=83.16 Aligned_cols=181 Identities=17% Similarity=0.218 Sum_probs=108.8
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc--------CCceEEEEecchhhccC
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH--------FEGSYFAQNVREAEETG 264 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~~~~~ 264 (963)
|...++++|.+..++.+.+.+..+ .-.+.+.++|++|+|||++|+.+++.+... |...++- ... ....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-ASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-ccCC
Confidence 455678899999999999998743 345688899999999999999998876431 2211111 100 0111
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeC-Cchhhhc-C
Q 002125 265 GIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTR-DKQVLKN-C 340 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR-~~~v~~~-~ 340 (963)
++..+ .++...+... -..+++-++|+|+++.. ..+..+...+......+.+|++|. ...+... .
T Consensus 89 ~~~~i-~~l~~~~~~~-----------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 89 SVDDI-RNLIDQVRIP-----------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred CHHHH-HHHHHHHhhc-----------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 11111 1222211100 01245568999998654 346666665544344556665553 3333222 1
Q ss_pred CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 341 RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
.....++..+++.++....+...+..... .-..+.+..+++.++|.+-.
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRD 205 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHH
Confidence 23357899999999999888877643222 12246788888899987653
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=0.00013 Score=88.92 Aligned_cols=180 Identities=13% Similarity=0.147 Sum_probs=109.5
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC-----Cc-----------------
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF-----EG----------------- 250 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~----------------- 250 (963)
|....++||.+..++.|...+..+ .-.+.+.++|..|+||||+|+.+++.+.-.. .+
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 445578999999999999998743 2345688999999999999999998663110 00
Q ss_pred -eEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceE
Q 002125 251 -SYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRV 327 (963)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~I 327 (963)
+.++. .....++..+ +++...+. ..-..++.-++|||+++.. .....|+..+......+.+
T Consensus 90 dv~eid----aas~~~Vd~i-R~l~~~~~-----------~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 90 DVTEID----AASHGGVDDA-RELRERAF-----------FAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred cEEEec----ccccCCHHHH-HHHHHHHH-----------hchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 01110 0000111111 11111110 0112345668899999764 4466777777665667776
Q ss_pred EEEeCC-chhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 328 IITTRD-KQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 328 ivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
|++|.+ ..+...+ .....|++..++.++..+.+.+.+-... .....+....|++.++|.+..
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG--v~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG--VPVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 665543 3444332 3356899999999999988877652221 112335567889999998743
No 113
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.10 E-value=0.00023 Score=81.45 Aligned_cols=180 Identities=15% Similarity=0.140 Sum_probs=102.7
Q ss_pred CcccchhhHH--HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCC--ceEEEEecchhhccCCHHHHHHHH
Q 002125 198 DLVGVEWRIK--EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDLQKEL 273 (963)
Q Consensus 198 ~~vGr~~~~~--~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l 273 (963)
.++|.+.... ...++..........+.|+|.+|+|||+||+++++.+.++.+ .++|+. . ..+..++
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~ 181 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDF 181 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHH
Confidence 3457655432 223333222222356889999999999999999998876643 244443 1 1222233
Q ss_pred HHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH----HHHHHHHhccCC-CCCceEEEEeCCc-h--------hhhc
Q 002125 274 LSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR----QIESLIRRLDRL-ASGSRVIITTRDK-Q--------VLKN 339 (963)
Q Consensus 274 l~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----~~~~l~~~l~~~-~~gs~IivTTR~~-~--------v~~~ 339 (963)
...+.. ...+.+.+.+++ .-+|||||++... ..+.+...+... ..|..+|+|+... . +...
T Consensus 182 ~~~~~~----~~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SR 256 (405)
T TIGR00362 182 VNALRN----NKMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSR 256 (405)
T ss_pred HHHHHc----CCHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhh
Confidence 333322 134445555544 3478899996431 122233222111 2455688887642 1 1222
Q ss_pred CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHH
Q 002125 340 CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 340 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
+....++++++.+.++-.+++.+.+-.. ...-.++....|++.+.|..-.+.-
T Consensus 257 l~~g~~v~i~~pd~~~r~~il~~~~~~~--~~~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 257 FEWGLVVDIEPPDLETRLAILQKKAEEE--GLELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred ccCCeEEEeCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHhcCCCHHHHHH
Confidence 2334578999999999999999887432 2222356778888888887765443
No 114
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.10 E-value=4.7e-05 Score=81.33 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=81.0
Q ss_pred CcccchhhHHHHHHhHh----------c---CCCCeEEEEEEccCCCChhhHHHHHHHHHhccC--CceEEEEecchhhc
Q 002125 198 DLVGVEWRIKEIESLLC----------T---GFAGVYILGIWGIGGIGKTTIADAVFNKISRHF--EGSYFAQNVREAEE 262 (963)
Q Consensus 198 ~~vGr~~~~~~l~~~L~----------~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~ 262 (963)
.++|.+...++|.++.. . ..+....+.++|++|+||||+|+.+++.+...- ....++. +..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH---
Confidence 46777666665543322 0 123456688999999999999999988653211 1112221 100
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHc-CCceEEEEcCCCC----------HHHHHHHHHhccCCCCCceEEEEe
Q 002125 263 TGGIKDLQKELLSKLLNDRNVWNIESQLNRLA-RKKFLIVFDDVTH----------PRQIESLIRRLDRLASGSRVIITT 331 (963)
Q Consensus 263 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~----------~~~~~~l~~~l~~~~~gs~IivTT 331 (963)
..+ .....+ .....+++.+. ...-+|++|+++. .+.++.+...+........+|+++
T Consensus 83 ----~~l----~~~~~g----~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ----ADL----VGEYIG----HTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred ----HHh----hhhhcc----chHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 011 111100 01111112221 1234889999975 234566666655444444556665
Q ss_pred CCchhhh------cC--CcceEEEeccCCHHHHHHHHHHhhc
Q 002125 332 RDKQVLK------NC--RARQIFRMKELEDADAHKLFCQCAF 365 (963)
Q Consensus 332 R~~~v~~------~~--~~~~~~~l~~L~~~ea~~Lf~~~a~ 365 (963)
.....-. .. .....+++++++.+|-.+++.+.+-
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4332200 00 1234688999999999999987763
No 115
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=5.4e-07 Score=103.25 Aligned_cols=178 Identities=25% Similarity=0.300 Sum_probs=107.0
Q ss_pred ccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCC
Q 002125 572 SIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLP 651 (963)
Q Consensus 572 ~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP 651 (963)
.+..+.+|++|++.+|. +..+...+..+++|++|+|++|.+.. +.
T Consensus 90 ~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~----------------------------------i~ 134 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITK----------------------------------LE 134 (414)
T ss_pred ccccccceeeeeccccc-hhhcccchhhhhcchheecccccccc----------------------------------cc
Confidence 46667778888887744 44444336778888888888876421 11
Q ss_pred ccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcccccccC
Q 002125 652 SSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSSIFSLCM 730 (963)
Q Consensus 652 ~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~ 730 (963)
.+..++.|+.|++++|.+... ..+..+++|+.+++++|.+..+... ...+.+|+.+.+.+|.....- .+..
T Consensus 135 -~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~--- 206 (414)
T KOG0531|consen 135 -GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDL--- 206 (414)
T ss_pred -chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHH---
Confidence 123345577777777765432 2344467777777777777766553 456777777777776432211 1111
Q ss_pred CCCCcEEEccCCCCCCcCccccCCCC--CccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCccc
Q 002125 731 FKSLTSLEIIDCQNFMILPDELGNLK--ALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRL 794 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~~~p~~l~~l~--~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 794 (963)
+..+..+++..|.+...-+ +..+. .|+.+++++|.+..++..+..+..+..|++.+|++..+
T Consensus 207 ~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 207 LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence 3334444555554433221 22222 37788888888877777777778888888888776644
No 116
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=0.00019 Score=84.69 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=112.1
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCce---EEEEecchhhccCCHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGS---YFAQNVREAEETGGIKDL 269 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~---~~~~~~~~~~~~~~~~~l 269 (963)
|....+++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+....... .-+... +.-.-
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c-------g~c~~ 91 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC-------GVGEH 91 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC-------cccHH
Confidence 455678999999999999998744 2355788999999999999999998653222100 000000 00000
Q ss_pred HHHHHHhhhc------CCCCCCHHH---HHHHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEe-C
Q 002125 270 QKELLSKLLN------DRNVWNIES---QLNRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITT-R 332 (963)
Q Consensus 270 ~~~ll~~l~~------~~~~~~~~~---l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R 332 (963)
.+.+...... ......++. +.+.+ .+++-++|+|+++.. .....|+..+......+.+|++| .
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 0011100000 000011222 22222 244567899999654 34667776665555667776555 4
Q ss_pred CchhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 333 DKQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 333 ~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
...+.... .....+++..++.++..+.+.+.+-... ..-..+.+..|++.++|.+.-+.
T Consensus 172 ~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--VEVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 34443222 2346899999999999999888763222 12234667889999999886443
No 117
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.09 E-value=3.2e-05 Score=85.46 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=90.3
Q ss_pred cccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHH
Q 002125 191 TFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQ 270 (963)
Q Consensus 191 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 270 (963)
..|....+++|.+...+.+..++..+ .-..++.++|++|+|||++|+.+++.....+ ..+. . +. .....+.
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~---~~-~~~~~i~ 85 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-G---SD-CRIDFVR 85 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-c---Cc-ccHHHHH
Confidence 34556688999999999999998743 3456777899999999999999998753222 2222 1 11 1111111
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH---HHHHHHHHhccCCCCCceEEEEeCCchhh-hcC-CcceE
Q 002125 271 KELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP---RQIESLIRRLDRLASGSRVIITTRDKQVL-KNC-RARQI 345 (963)
Q Consensus 271 ~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~~-~~~~~ 345 (963)
+.+...... ..+.+.+-++|+||++.. +..+.+...+.....++++|+||...... ... .....
T Consensus 86 -~~l~~~~~~----------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 86 -NRLTRFAST----------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred -HHHHHHHHh----------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 111111100 001234568899999755 22334444444445678899988754321 111 12246
Q ss_pred EEeccCCHHHHHHHHHH
Q 002125 346 FRMKELEDADAHKLFCQ 362 (963)
Q Consensus 346 ~~l~~L~~~ea~~Lf~~ 362 (963)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 77778888888776544
No 118
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=4.5e-05 Score=89.14 Aligned_cols=179 Identities=14% Similarity=0.118 Sum_probs=108.4
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC---------------------Cce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF---------------------EGS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~ 251 (963)
|....++||-+.-++.+..++..+ .-.+.+.++|+.|+||||+|+.++..+.... ...
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 445578999999999999998743 2345678999999999999999998653211 111
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH--HHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR--QIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gs~Iiv 329 (963)
+.+.. ....++.. .++++...... -..+++-++|+|+++... ....++..+......+.+|.
T Consensus 91 ~ei~~----~~~~~vd~-ir~l~~~~~~~-----------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 91 IEVDA----ASNTQVDA-MRELLDNAQYA-----------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred eEeec----cccCCHHH-HHHHHHHHhhC-----------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 11110 00011111 11222211100 013566799999998653 46677776665455666666
Q ss_pred EeCCc-hhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch
Q 002125 330 TTRDK-QVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 330 TTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
+|.+. .+... ......+++++++.++..+.+.+.+-... .....+.+..|++.++|.+.
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAGSMR 215 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 55443 33222 12235789999999999988877653221 12234556888999999875
No 119
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=0.00011 Score=84.20 Aligned_cols=158 Identities=13% Similarity=0.180 Sum_probs=95.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCC--ceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCc
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKK 297 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~ 297 (963)
...+.|+|.+|+|||+||+++++.+....+ .+.|+. . ..+..++...+.. ...+.+++..+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~~~~~~~----~~~~~f~~~~~~~~ 195 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDLVDSMKE----GKLNEFREKYRKKV 195 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHhc----ccHHHHHHHHHhcC
Confidence 445899999999999999999998766543 344543 1 2233334333322 23344555555556
Q ss_pred eEEEEcCCCCH---HH-HHHHHHhccC-CCCCceEEEEeC-Cchh--------hhcCCcceEEEeccCCHHHHHHHHHHh
Q 002125 298 FLIVFDDVTHP---RQ-IESLIRRLDR-LASGSRVIITTR-DKQV--------LKNCRARQIFRMKELEDADAHKLFCQC 363 (963)
Q Consensus 298 ~LlVLDdv~~~---~~-~~~l~~~l~~-~~~gs~IivTTR-~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 363 (963)
-+|++||++.. .. -+.+...+.. ...|..||+||. ...- ...+....++++++.+.++-.+++.+.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 68999999643 11 1222222111 123557888885 3222 112233457899999999999999888
Q ss_pred hcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 364 AFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 364 a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
+-... ..-.++....|++.+.|.--.+.
T Consensus 276 ~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 276 LEIEH--GELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHhcC--CCCCHHHHHHHHhccccCHHHHH
Confidence 73221 22234677888888887655444
No 120
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.07 E-value=6.2e-05 Score=76.97 Aligned_cols=256 Identities=14% Similarity=0.178 Sum_probs=138.3
Q ss_pred cccCCCcccchhhHHHHHHhHhc---CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchh-hccCCHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT---GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREA-EETGGIKD 268 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-~~~~~~~~ 268 (963)
|....+|||.++-.+++.-.+.. ..+..-.+.++|++|.||||||.-+++.+...+.... +.. ....++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-----Gp~leK~gDl-- 94 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS-----GPALEKPGDL-- 94 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc-----cccccChhhH--
Confidence 55568899999998888776652 2344567899999999999999999998765543110 000 001111
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH-HHHHHH-HhccCC--------CCCce-----------E
Q 002125 269 LQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR-QIESLI-RRLDRL--------ASGSR-----------V 327 (963)
Q Consensus 269 l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-~~~~l~-~~l~~~--------~~gs~-----------I 327 (963)
..+...|.... ++.+|.+.... ..++++ +...++ ++++| |
T Consensus 95 ------------------aaiLt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 95 ------------------AAILTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred ------------------HHHHhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 12222222223 45667775432 123322 222211 34444 3
Q ss_pred EEEeCCchhhhcCC--cceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhcCCCCHH
Q 002125 328 IITTRDKQVLKNCR--ARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGRSKE 405 (963)
Q Consensus 328 ivTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~~~~~ 405 (963)
=.|||...+..... ..-+.+++-.+.+|-.+...+.+-. -..+-.++.+.+|+++..|-|.-..-+-..+ -
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~--l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV-----R 228 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI--LGIEIDEEAALEIARRSRGTPRIANRLLRRV-----R 228 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH--hCCCCChHHHHHHHHhccCCcHHHHHHHHHH-----H
Confidence 46888765433221 2246788999999999999888722 2222334668999999999995332222211 1
Q ss_pred HHHHHHHHhhcCCC----hhHHHHHHHHhhCCChhhHHHHHhhhcccCcc--ChhHHHHHHhhcCCChhhhHH-hhhccc
Q 002125 406 EWESAMRKLEVIPD----KEIQEVLKISYDSLDDPQKNVFLDIACFLEGE--HRDEVTSFFDASGFQAKIELS-VLEGKS 478 (963)
Q Consensus 406 ~w~~~l~~l~~~~~----~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~~~~l~-~L~~~s 478 (963)
++..+... ..-+ ......|.+--.+|+...++.+..+.-.+.|- -.+.+...+..+....++.++ -|++.+
T Consensus 229 Dfa~V~~~--~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~g 306 (332)
T COG2255 229 DFAQVKGD--GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQG 306 (332)
T ss_pred HHHHHhcC--CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhc
Confidence 11111100 0001 12233444444567777777776666554333 344444433322221222222 367777
Q ss_pred Cceee
Q 002125 479 LITCF 483 (963)
Q Consensus 479 Li~~~ 483 (963)
+++..
T Consensus 307 fi~RT 311 (332)
T COG2255 307 FIQRT 311 (332)
T ss_pred hhhhC
Confidence 77765
No 121
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.04 E-value=0.00011 Score=85.12 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=103.5
Q ss_pred cccchhhH--HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCc--eEEEEecchhhccCCHHHHHHHHH
Q 002125 199 LVGVEWRI--KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEG--SYFAQNVREAEETGGIKDLQKELL 274 (963)
Q Consensus 199 ~vGr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~ll 274 (963)
++|..... ....++..........+.|+|.+|+|||+||+++++.+..+++. +.|+. . ..+..++.
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~~ 194 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDFV 194 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHH
Confidence 45655442 23333333222234568999999999999999999988776532 33443 1 12222333
Q ss_pred HhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----HHHHHHHHhccC-CCCCceEEEEeCCch---------hhhcC
Q 002125 275 SKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----RQIESLIRRLDR-LASGSRVIITTRDKQ---------VLKNC 340 (963)
Q Consensus 275 ~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----~~~~~l~~~l~~-~~~gs~IivTTR~~~---------v~~~~ 340 (963)
..+.. ...+.+.+.++. .-+|||||++.. ...+.+...+.. ...|..||+|+.... +...+
T Consensus 195 ~~~~~----~~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl 269 (450)
T PRK00149 195 NALRN----NTMEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF 269 (450)
T ss_pred HHHHc----CcHHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHh
Confidence 33321 123445555553 458899999542 112233322211 123556888876431 12233
Q ss_pred CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 341 RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 341 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
....++++++.+.++-.+++.+.+-.. ...-.++....|++.++|..-.+.
T Consensus 270 ~~gl~v~i~~pd~~~r~~il~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 270 EWGLTVDIEPPDLETRIAILKKKAEEE--GIDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred cCCeeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHH
Confidence 344689999999999999999887432 222334678888888888776544
No 122
>PF14516 AAA_35: AAA-like domain
Probab=98.03 E-value=0.0015 Score=72.18 Aligned_cols=199 Identities=8% Similarity=0.086 Sum_probs=114.8
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhc--cCCHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEE--TGGIKDLQ 270 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~--~~~~~~l~ 270 (963)
+.+.+..|+|...-+++.+.+... -..+.|.|+-.+|||+|...+.+...+.=-.+++++ ...... ..+.....
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHH
Confidence 455677889995555555555431 358899999999999999999988765433344553 333222 23444444
Q ss_pred HHHHHhhhcCCCC------------C---CH-HHHHHH-H--cCCceEEEEcCCCCHHH----HHHHHHhccC-------
Q 002125 271 KELLSKLLNDRNV------------W---NI-ESQLNR-L--ARKKFLIVFDDVTHPRQ----IESLIRRLDR------- 320 (963)
Q Consensus 271 ~~ll~~l~~~~~~------------~---~~-~~l~~~-L--~~k~~LlVLDdv~~~~~----~~~l~~~l~~------- 320 (963)
+.+...+...-.. . .. ..+.+. + .+++.+|++|+|+..-. .+.+...+..
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 4444443322211 0 01 123332 2 26899999999975421 1222222110
Q ss_pred CC-CCc--eEEEEeCCchhhh-----cCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 321 LA-SGS--RVIITTRDKQVLK-----NCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 321 ~~-~gs--~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
.. ... -|++.+....... .......+++++++.+|...|..++... -.....++|...+||+|.-+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHH
Confidence 00 111 1222221111111 1123457899999999999998876421 11223899999999999999
Q ss_pred HHhhhhcCC
Q 002125 393 KVLGHHLCG 401 (963)
Q Consensus 393 ~~l~~~L~~ 401 (963)
..++..+..
T Consensus 237 ~~~~~~l~~ 245 (331)
T PF14516_consen 237 QKACYLLVE 245 (331)
T ss_pred HHHHHHHHH
Confidence 999888855
No 123
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00011 Score=85.87 Aligned_cols=186 Identities=15% Similarity=0.136 Sum_probs=112.2
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC---------------------Cce
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF---------------------EGS 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~ 251 (963)
|....+++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-... ..+
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 445578899998888888888643 2346788999999999999999998653211 011
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
.++.. ....++..+ +.+...+.. .-..+++-++|+|+++.. +....|+..+........+|+
T Consensus 91 ~eId~----a~~~~Id~i-R~L~~~~~~-----------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifIL 154 (624)
T PRK14959 91 VEIDG----ASNRGIDDA-KRLKEAIGY-----------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVL 154 (624)
T ss_pred EEEec----ccccCHHHH-HHHHHHHHh-----------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEE
Confidence 11110 001111111 111111110 012356679999999654 456677766654345566666
Q ss_pred EeCC-chhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc-hhHHHhhh
Q 002125 330 TTRD-KQVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP-LALKVLGH 397 (963)
Q Consensus 330 TTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~l~~ 397 (963)
+|.+ ..+... ......+++++++.++..+.+...+..... .-..+.++.|++.++|.+ .|+..+..
T Consensus 155 aTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeq 223 (624)
T PRK14959 155 ATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQ 223 (624)
T ss_pred ecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5554 333322 122357899999999999888876633221 123466788999999965 56666543
No 124
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00035 Score=80.18 Aligned_cols=181 Identities=15% Similarity=0.183 Sum_probs=107.8
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC------Cce--------------E
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF------EGS--------------Y 252 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~--------------~ 252 (963)
|....+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+...- .+. -
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 445678999999999999998643 2346778999999999999999998653210 000 0
Q ss_pred EEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEE
Q 002125 253 FAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIIT 330 (963)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivT 330 (963)
|+. +.. ....++..+ +++...+. .....+++-++|+|+++.. +..+.|...+........+|++
T Consensus 92 ~~~-i~g-~~~~gid~i-r~i~~~l~-----------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 92 VLE-IDG-ASHRGIEDI-RQINETVL-----------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred eEE-eec-cccCCHHHH-HHHHHHHH-----------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEE
Confidence 110 000 000111111 11111110 0011256678999998654 3456666666554556667666
Q ss_pred eCC-chhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch
Q 002125 331 TRD-KQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 331 TR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
|.+ ..+.... .....+++.+++.++..+.+.+.+-... ..-..+.++.+++.++|.+.
T Consensus 158 t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 158 TTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLR 217 (451)
T ss_pred eCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 643 3333221 2346899999999999988877653211 12234668889999999764
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00031 Score=83.01 Aligned_cols=192 Identities=15% Similarity=0.127 Sum_probs=108.4
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc--CCceEEEEecchhhccCCHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH--FEGSYFAQNVREAEETGGIKDLQ 270 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~ 270 (963)
|...+++||-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+--. .+...|...+.+. .+.-...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~---Cg~C~sC 87 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP---CGECESC 87 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC---CccCHHH
Confidence 445678999999999999988643 234568899999999999999999865321 1101111100000 0000000
Q ss_pred HHHHHh-------hhcCCCC--CCHHHHHHHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEe-CC
Q 002125 271 KELLSK-------LLNDRNV--WNIESQLNRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITT-RD 333 (963)
Q Consensus 271 ~~ll~~-------l~~~~~~--~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~ 333 (963)
+.+... +.+.... +.+..+.+.+ .+.+-++|+|+++.. ...+.|+..+..-...+.+|++| +.
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 000000 0000000 1111222222 244567899998764 34677777766545566655554 43
Q ss_pred chhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch
Q 002125 334 KQVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 334 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
..+... ......+++.+++.++....+.+.+-... ..-..+.++.+++.++|..-
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHH
Confidence 444332 23457899999999999888876653211 11234668889999999664
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00027 Score=84.25 Aligned_cols=191 Identities=14% Similarity=0.129 Sum_probs=111.1
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKE 272 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 272 (963)
|...+++||-+..++.|..++..+ .-.+.+.++|..|+||||+|+.+++.+.......-+ ...+.-...+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~ 82 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRA 82 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHH
Confidence 445678999999999999888744 234567899999999999999999876321100000 00000011111
Q ss_pred HHHhhhc------CCCC---CCHHHHHHHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc-h
Q 002125 273 LLSKLLN------DRNV---WNIESQLNRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK-Q 335 (963)
Q Consensus 273 ll~~l~~------~~~~---~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~ 335 (963)
+...... .... +++..+.+.+ .+++-++|+|+++.. +..+.|+..+......+.+|++|.+. .
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 1110000 0000 1111222221 245668999999644 45777776665545667777666443 3
Q ss_pred hhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHH
Q 002125 336 VLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 336 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
+.... .....+++..++.++....+.+.+..... .-..+.+..+++.++|.+..+..
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 32211 22357889999999999888877633221 12346688999999998865443
No 127
>PRK06620 hypothetical protein; Validated
Probab=98.01 E-value=4.8e-05 Score=78.16 Aligned_cols=133 Identities=13% Similarity=0.104 Sum_probs=78.9
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLI 300 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~Ll 300 (963)
+.+.|||++|+|||+|++.+++.... .++... .. .. +.. +..-++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~~----~~-------------------~~~-~~~d~l 89 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------FF----NE-------------------EIL-EKYNAF 89 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh------hh----ch-------------------hHH-hcCCEE
Confidence 66899999999999999987764321 222100 00 00 011 123478
Q ss_pred EEcCCCCHHH--HHHHHHhccCCCCCceEEEEeCCchh-------hhcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCC
Q 002125 301 VFDDVTHPRQ--IESLIRRLDRLASGSRVIITTRDKQV-------LKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPD 371 (963)
Q Consensus 301 VLDdv~~~~~--~~~l~~~l~~~~~gs~IivTTR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 371 (963)
++||++..++ +-.+...+. ..|..||+|++.... ...+...-++++++++.++-.+++.+.+-.. .-
T Consensus 90 liDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~--~l 165 (214)
T PRK06620 90 IIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS--SV 165 (214)
T ss_pred EEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc--CC
Confidence 8999975432 222222222 356789999985422 1222334589999999999888887776321 11
Q ss_pred CcHHHHHHHHHHHhcCCchhH
Q 002125 372 ASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 372 ~~~~~~~~~i~~~~~g~PLal 392 (963)
.-.++..+.|++++.|.--.+
T Consensus 166 ~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 166 TISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCCHHHHHHHHHHccCCHHHH
Confidence 223466777777776655443
No 128
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00072 Score=78.17 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=108.3
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-----CCc----------------e
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-----FEG----------------S 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~----------------~ 251 (963)
|.....++|-+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.++..+... .++ .
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 445578899999999999999753 334667789999999999999998865311 011 1
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCC
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASG 324 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~g 324 (963)
..+. .....++. .+..+.+.. .+++-++|+|+++.. +..+.+...+....+.
T Consensus 91 ~eid----aas~~gvd-----------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 91 IEID----AASNRGID-----------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred EEEe----CccCCCHH-----------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 1110 00001111 111222222 345679999999754 4466676666554455
Q ss_pred ceEEEEe-CCchhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 325 SRVIITT-RDKQVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 325 s~IivTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
..+|++| +...+... ......+++.+++.++..+.+...+-... .....+.+..+++.++|.+..+.
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg--i~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK--IEYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 6665555 33333222 12345789999999999988887663222 12234567888999999776443
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.96 E-value=8.3e-05 Score=88.64 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=40.6
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
|...+.++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 44557899999999998877743 334579999999999999999998754
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.96 E-value=0.00011 Score=90.72 Aligned_cols=193 Identities=13% Similarity=0.149 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhhhcccccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC------C
Q 002125 176 LVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF------E 249 (963)
Q Consensus 176 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~ 249 (963)
.+++...++..+.. +...+.+|||+.+++++.+.|.... ..-+.++|.+|+||||+|+.+++++.... .
T Consensus 169 ~l~~~~~~L~~~~r---~~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~ 243 (852)
T TIGR03345 169 ALDQYTTDLTAQAR---EGKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRN 243 (852)
T ss_pred hHHHHhhhHHHHhc---CCCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccC
Confidence 45555555544432 3455789999999999999886432 23456999999999999999999875432 1
Q ss_pred ceEEEEecchhhc----cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH---------HHH-HHH
Q 002125 250 GSYFAQNVREAEE----TGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR---------QIE-SLI 315 (963)
Q Consensus 250 ~~~~~~~~~~~~~----~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---------~~~-~l~ 315 (963)
..+|..++..... .....+-.++++..+. -.+++++|++|++.... +.. .|.
T Consensus 244 ~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~--------------~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lk 309 (852)
T TIGR03345 244 VRLLSLDLGLLQAGASVKGEFENRLKSVIDEVK--------------ASPQPIILFIDEAHTLIGAGGQAGQGDAANLLK 309 (852)
T ss_pred CeEEEeehhhhhcccccchHHHHHHHHHHHHHH--------------hcCCCeEEEEeChHHhccCCCccccccHHHHhh
Confidence 2334333322110 0111122222222211 02468999999985431 111 244
Q ss_pred HhccCCCCCceEEEEeCCchhhhcC-------CcceEEEeccCCHHHHHHHHHHhhc--CCCCCCCcHHHHHHHHHHHhc
Q 002125 316 RRLDRLASGSRVIITTRDKQVLKNC-------RARQIFRMKELEDADAHKLFCQCAF--GGDHPDASHIELTDKAIKYAQ 386 (963)
Q Consensus 316 ~~l~~~~~gs~IivTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~--~~~~~~~~~~~~~~~i~~~~~ 386 (963)
+.+. ...-++|-||...+..... ...+++.+++++.+++.+++....- .....-.-..+....+++.+.
T Consensus 310 p~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ 387 (852)
T TIGR03345 310 PALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSH 387 (852)
T ss_pred HHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcc
Confidence 4433 2235566666543221111 1235899999999999999754431 111222223455666777766
Q ss_pred CCc
Q 002125 387 GVP 389 (963)
Q Consensus 387 g~P 389 (963)
+..
T Consensus 388 ryi 390 (852)
T TIGR03345 388 RYI 390 (852)
T ss_pred ccc
Confidence 543
No 131
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.96 E-value=0.00011 Score=90.07 Aligned_cols=166 Identities=16% Similarity=0.204 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhhhcccccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC------C
Q 002125 176 LVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF------E 249 (963)
Q Consensus 176 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~ 249 (963)
.+++...++..+.. +...+.++||+++++++.+.|... ...-+.++|.+|+|||++|+.+++++...- .
T Consensus 164 ~l~~~~~~l~~~~r---~~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~ 238 (731)
T TIGR02639 164 ALEKYTVDLTEKAK---NGKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKN 238 (731)
T ss_pred HHHHHhhhHHHHHh---cCCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 44454445544433 344567999999999999988643 233467999999999999999999874431 2
Q ss_pred ceEEEEecchhhcc----CCHHHHHHHHHHhhhcCCCCCCHHHHHHHH-cCCceEEEEcCCCCH-----------HHHHH
Q 002125 250 GSYFAQNVREAEET----GGIKDLQKELLSKLLNDRNVWNIESQLNRL-ARKKFLIVFDDVTHP-----------RQIES 313 (963)
Q Consensus 250 ~~~~~~~~~~~~~~----~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-----------~~~~~ 313 (963)
..+|..+....... ....+-.+ .+.+.+ ..++.+|++|+++.. +.-+.
T Consensus 239 ~~~~~~~~~~l~a~~~~~g~~e~~l~----------------~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~ 302 (731)
T TIGR02639 239 AKIYSLDMGSLLAGTKYRGDFEERLK----------------AVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNL 302 (731)
T ss_pred CeEEEecHHHHhhhccccchHHHHHH----------------HHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHH
Confidence 33443322111100 01111111 222222 245789999998633 12233
Q ss_pred HHHhccCCCCCceEEEEeCCchhhhc-------CCcceEEEeccCCHHHHHHHHHHhh
Q 002125 314 LIRRLDRLASGSRVIITTRDKQVLKN-------CRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 314 l~~~l~~~~~gs~IivTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
+.+.+. ...-++|-+|..++.... ....+.++++.++.++..+++....
T Consensus 303 L~~~l~--~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 303 LKPALS--SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHh--CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 444443 122344544443221100 0123578999999999999998654
No 132
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.96 E-value=0.00033 Score=80.06 Aligned_cols=153 Identities=10% Similarity=0.098 Sum_probs=89.1
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFL 299 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~L 299 (963)
...+.|+|..|+|||+||+++++.+......++++.. ..+...+...+.. ...+.++...+ +.-+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~----------~~f~~~~~~~l~~----~~~~~f~~~~~-~~dv 205 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS----------ELFTEHLVSAIRS----GEMQRFRQFYR-NVDA 205 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH----------HHHHHHHHHHHhc----chHHHHHHHcc-cCCE
Confidence 3568899999999999999999987655445556541 1222333333321 12334444443 3457
Q ss_pred EEEcCCCCHH----HHHHHHHhccC-CCCCceEEEEeCCc---------hhhhcCCcceEEEeccCCHHHHHHHHHHhhc
Q 002125 300 IVFDDVTHPR----QIESLIRRLDR-LASGSRVIITTRDK---------QVLKNCRARQIFRMKELEDADAHKLFCQCAF 365 (963)
Q Consensus 300 lVLDdv~~~~----~~~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 365 (963)
|++||+.... ..+.+...+.. ...|..||+||... .+...+.....+++.+++.++-.+++.+.+-
T Consensus 206 LiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 206 LFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred EEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 8889985431 12233322211 12456788888542 1222233446889999999999999988773
Q ss_pred CCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 366 GGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 366 ~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
... ..-.++....|++.+.+.-
T Consensus 286 ~~~--~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 286 ALS--IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HcC--CCCCHHHHHHHHHhcCCCH
Confidence 321 1222455566666666543
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.0009 Score=77.34 Aligned_cols=183 Identities=16% Similarity=0.146 Sum_probs=111.5
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc-cCC-------------------ceE
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR-HFE-------------------GSY 252 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~-------------------~~~ 252 (963)
|....++||-+..++.+...+..+ .-.++..++|..|+||||+|+.++..+-. ... ..+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 455678999999999999998644 34567789999999999999999886521 110 001
Q ss_pred EEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEE
Q 002125 253 FAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIIT 330 (963)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivT 330 (963)
+.-+ .....++..+.. +....... -..+++-++|+|+++.. +...+|+..+......+++|++
T Consensus 89 ~eld---aas~~gId~IRe-lie~~~~~-----------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 89 IEMD---AASNRGIDDIRE-LIEQTKYK-----------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred EEec---cccccCHHHHHH-HHHHHhhC-----------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 1000 011112222221 11111000 01145668899999754 4466777666555667777777
Q ss_pred eCCc-hhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 331 TRDK-QVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 331 TR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
|.+. .+... ......+++.+++.++..+.+.+.+-... ..-..+.++.|++.++|.+.-+.
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG--i~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG--VSYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHHH
Confidence 7654 22211 12346899999999999998877663222 12234668899999999885443
No 134
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=9.3e-06 Score=59.77 Aligned_cols=40 Identities=28% Similarity=0.521 Sum_probs=30.2
Q ss_pred CCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccC
Q 002125 756 KALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLP 795 (963)
Q Consensus 756 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 795 (963)
++|++|++++|+++.+|..+++|++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4678888888888888877888888888888888887665
No 135
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.0002 Score=84.98 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=107.5
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc-cCC-----c------------eEEE
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR-HFE-----G------------SYFA 254 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~-----~------------~~~~ 254 (963)
|.....++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-. +.. + ++.+
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 455678999999999999999743 33567789999999999999999986522 110 0 0000
Q ss_pred EecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEE-EEe
Q 002125 255 QNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVI-ITT 331 (963)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii-vTT 331 (963)
. . ....++.. .+++...+.. .-..+++-++|+|+++.. ..+.+|+..+........+| +|+
T Consensus 93 d---a-asn~~vd~-IReLie~~~~-----------~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTt 156 (725)
T PRK07133 93 D---A-ASNNGVDE-IRELIENVKN-----------LPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATT 156 (725)
T ss_pred e---c-cccCCHHH-HHHHHHHHHh-----------chhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcC
Confidence 0 0 00001111 1111111110 012256668999999654 45677776665444555555 454
Q ss_pred CCchhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch
Q 002125 332 RDKQVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 332 R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
+...+... ......+++.+++.++..+.+...+-... .....+.+..+++.++|.+.
T Consensus 157 e~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 157 EVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred ChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 44444332 23346899999999999988877652221 12223557889999998764
No 136
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.92 E-value=1.9e-05 Score=79.72 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=35.9
Q ss_pred CcccchhhHHHHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 198 DLVGVEWRIKEIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 198 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
.||||+++++++...+. ......+.+.|+|.+|+|||+|.++++.++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 334557899999999999999999999988777
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0012 Score=78.44 Aligned_cols=190 Identities=15% Similarity=0.105 Sum_probs=108.9
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC-CceEEEEecchhhccCCHHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF-EGSYFAQNVREAEETGGIKDLQK 271 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~ 271 (963)
|.....++|.+..++.|..++..+. -.+.+.++|..|+||||+|+.++..+.... ..... . ..+.-...+
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~-~-------~Cg~C~~C~ 82 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP-E-------PCGKCELCR 82 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC-C-------CCcccHHHH
Confidence 4455789999999999999987542 235678999999999999999998653211 10000 0 000000111
Q ss_pred HHHHhhh------cCCCCCCHHHHH---HHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc-
Q 002125 272 ELLSKLL------NDRNVWNIESQL---NRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK- 334 (963)
Q Consensus 272 ~ll~~l~------~~~~~~~~~~l~---~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~- 334 (963)
.+..... .......++.++ +.+ .+++-++|+|+++.. +....|+..+..-.....+|++|.+.
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 1110000 000001112111 111 245568899999754 45777777666544556555555433
Q ss_pred hhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 335 QVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 335 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
.+.... .....+++..++.++..+.+.+.+-.... .-..+.+..+++.++|.+..+.
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi--~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI--EIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 333222 23467888999999988887776632111 1223557889999999876443
No 138
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.90 E-value=0.00019 Score=80.62 Aligned_cols=175 Identities=15% Similarity=0.196 Sum_probs=99.2
Q ss_pred cccCCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhh
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE 261 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 261 (963)
.....++.|.+..+++|.+.+.. +-...+-+.++|++|+|||++|+++++.....|- .+. .
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~--~--- 212 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV--G--- 212 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe--h---
Confidence 33446789999999998877641 1234677999999999999999999987544331 111 0
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCHH-HHHHHHcCCceEEEEcCCCCH-------------H---HHHHHHHhccCC--C
Q 002125 262 ETGGIKDLQKELLSKLLNDRNVWNIE-SQLNRLARKKFLIVFDDVTHP-------------R---QIESLIRRLDRL--A 322 (963)
Q Consensus 262 ~~~~~~~l~~~ll~~l~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~~~--~ 322 (963)
..+.... .+.. ...+. .+.......+.+|++|+++.. + .+..++..+... .
T Consensus 213 -----s~l~~k~----~ge~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -----SEFVQKY----LGEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -----HHHHHHh----cchh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 0111110 0000 00111 112223457899999997642 1 122333333322 2
Q ss_pred CCceEEEEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHHHhhcCCCC-CCCcHHHHHHHHHHHhcCCc
Q 002125 323 SGSRVIITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFCQCAFGGDH-PDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 323 ~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~P 389 (963)
.+..||+||.....+.. ...+..++++..+.++..++|..+.-+... ...+ ..++++.+.|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 35678888875543321 134567899999999988888866532211 1112 345566666654
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00095 Score=79.42 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=109.6
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc-----------------------cCC
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR-----------------------HFE 249 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-----------------------~f~ 249 (963)
|...+.++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+.- +|+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 445578999999999999998743 33566889999999999999999886531 111
Q ss_pred ceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceE
Q 002125 250 GSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRV 327 (963)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~I 327 (963)
.. .+. .....++..+ +++..++... -..+++-++|+|+++.. .....|...+......+.+
T Consensus 92 ~~-~ld----~~~~~~vd~I-r~li~~~~~~-----------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 92 IH-ELD----AASNNSVDDI-RNLIEQVRIP-----------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred eE-Eec----ccccCCHHHH-HHHHHHHhhC-----------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 11 110 0001111111 1111111100 01234558899998754 4567777776655566776
Q ss_pred EEEe-CCchhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 328 IITT-RDKQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 328 ivTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
|++| +...+.... ....++++.+++.++....+.+.+-... .....+.+..|++.++|...-
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg--i~i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG--ITAEPEALNVIAQKADGGMRD 218 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 6555 444444332 3346899999999999998887663222 122335678899999987653
No 140
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.89 E-value=6.7e-05 Score=84.84 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=91.4
Q ss_pred cccCCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhh
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE 261 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 261 (963)
.....++.|.+.++++|.+.+.. +-...+-+.++|++|+|||++|+++++.....|- .+.. .+..
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~-seL~ 254 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG-SELI 254 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec-chhh
Confidence 33446788999999999887752 1134567889999999999999999998765441 1110 0000
Q ss_pred ccC--CHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH----------------HHHHHHHhccCC--
Q 002125 262 ETG--GIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR----------------QIESLIRRLDRL-- 321 (963)
Q Consensus 262 ~~~--~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~l~~~-- 321 (963)
..+ ......+. .+.....+.+.+|+||+++... .+..++..+..+
T Consensus 255 ~k~~Ge~~~~vr~---------------lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 255 QKYLGDGPKLVRE---------------LFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred hhhcchHHHHHHH---------------HHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 000 00011111 1112223567899999875321 122233333222
Q ss_pred CCCceEEEEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHHHhhc
Q 002125 322 ASGSRVIITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFCQCAF 365 (963)
Q Consensus 322 ~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 365 (963)
..+.+||+||.....+.. ...+..++++..+.++..++|..++.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 235678888875543322 12456889999999999999987763
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.86 E-value=0.00044 Score=74.51 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=71.8
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhccC--CceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceE
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRHF--EGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFL 299 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~L 299 (963)
-+.++|.+|+|||++|+.++..+...- ....|+.. + ... +.....+... .....+.+.. ..-+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v----~----~~~----l~~~~~g~~~-~~~~~~~~~a--~~gv 124 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV----T----RDD----LVGQYIGHTA-PKTKEILKRA--MGGV 124 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe----c----HHH----HhHhhcccch-HHHHHHHHHc--cCcE
Confidence 588999999999999999887654321 11123321 1 011 1111211111 1111111222 3368
Q ss_pred EEEcCCCCH-----------HHHHHHHHhccCCCCCceEEEEeCCchhhhc--C------CcceEEEeccCCHHHHHHHH
Q 002125 300 IVFDDVTHP-----------RQIESLIRRLDRLASGSRVIITTRDKQVLKN--C------RARQIFRMKELEDADAHKLF 360 (963)
Q Consensus 300 lVLDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~--~------~~~~~~~l~~L~~~ea~~Lf 360 (963)
|+||+++.. +..+.+...+.....+.+||+++-....-.. . .....+++++++.+|-.+++
T Consensus 125 L~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~ 204 (284)
T TIGR02880 125 LFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIA 204 (284)
T ss_pred EEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHH
Confidence 899999632 2345666666554556677777654322111 0 12357899999999999998
Q ss_pred HHhh
Q 002125 361 CQCA 364 (963)
Q Consensus 361 ~~~a 364 (963)
...+
T Consensus 205 ~~~l 208 (284)
T TIGR02880 205 GLML 208 (284)
T ss_pred HHHH
Confidence 8776
No 142
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.86 E-value=0.00023 Score=81.72 Aligned_cols=157 Identities=19% Similarity=0.327 Sum_probs=90.8
Q ss_pred cCCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccC-----CceEEEEecc
Q 002125 195 YNKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHF-----EGSYFAQNVR 258 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~ 258 (963)
....+.|.+..++++.+.+.. +-...+-+.++|++|+|||++|+++++.+...+ ....|+. +.
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 346678899999888877641 123456689999999999999999999876542 2233442 21
Q ss_pred hhh--cc--CCHHHHHHHHHHhhhcCCCCCCHHHHHHH-HcCCceEEEEcCCCCHH---------H-----HHHHHHhcc
Q 002125 259 EAE--ET--GGIKDLQKELLSKLLNDRNVWNIESQLNR-LARKKFLIVFDDVTHPR---------Q-----IESLIRRLD 319 (963)
Q Consensus 259 ~~~--~~--~~~~~l~~~ll~~l~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~---------~-----~~~l~~~l~ 319 (963)
... .. .......+.++. ..++. ..+++++|++|+++..- + +..++..+.
T Consensus 259 ~~eLl~kyvGete~~ir~iF~------------~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIFQ------------RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred chhhcccccchHHHHHHHHHH------------HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 100 00 000011111111 11111 23578999999997431 1 234444443
Q ss_pred CCC--CCceEEEEeCCchhhh-----cCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 320 RLA--SGSRVIITTRDKQVLK-----NCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 320 ~~~--~gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
... .+..||.||.....+. ....+..++++..+.++..++|..+.
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 222 3444566665443322 11335679999999999999998876
No 143
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00051 Score=79.94 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=92.5
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCC--ceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCce
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKF 298 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~ 298 (963)
..+.|+|..|+|||.|++++++.+...+. .+.|+. ...+..++...+.. ...+.+++++++ .=
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~----~~~~~f~~~y~~-~D 379 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRD----GKGDSFRRRYRE-MD 379 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHh----ccHHHHHHHhhc-CC
Confidence 45899999999999999999998765432 334543 12233333333221 123344555544 34
Q ss_pred EEEEcCCCCH---HHH-HHHHHhccC-CCCCceEEEEeCCc---------hhhhcCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 299 LIVFDDVTHP---RQI-ESLIRRLDR-LASGSRVIITTRDK---------QVLKNCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 299 LlVLDdv~~~---~~~-~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
+|||||+... +.+ +.+...+.. ...|..|||||+.. .+...+...-++++...+.+.-.+++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7888999543 111 223222211 13466788888753 222233445689999999999999999887
Q ss_pred cCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 365 FGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 365 ~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
-... ..-.+++++.|++.+.+..-.|.
T Consensus 460 ~~r~--l~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 460 VQEQ--LNAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HhcC--CCCCHHHHHHHHHhccCCHHHHH
Confidence 4322 22234667777777666544433
No 144
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.83 E-value=0.00012 Score=75.71 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=114.5
Q ss_pred ccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh--ccCCceEEEEecchhhccCCHHHH
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS--RHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
.|....+++|-+..++.|...+.. ...+....+|++|.|||+-|+.++..+- +-|++++--.+. +...+..-.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderGisvv 105 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERGISVV 105 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cccccccch
Confidence 355667899999999999888864 5667888999999999999999998652 345555432222 222222200
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHH---c---CCc-eEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCchhh-hc
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRL---A---RKK-FLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQVL-KN 339 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L---~---~k~-~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~ 339 (963)
...+ .+.+.+.... . -++ -.+|||+++.. +.|.++......+...+|.|..+-.-... ..
T Consensus 106 r~Ki----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 106 REKI----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhh----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 0000 1111111111 0 123 47899999865 45888888887777777766555433221 11
Q ss_pred C-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 340 C-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 340 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
. ....-|..++|..++..+-+...+-.... .-..+..+.|++.++|--
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v--~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGV--DIDDDALKLIAKISDGDL 224 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCcH
Confidence 1 22346889999999999988888743332 234567889999998854
No 145
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.0012 Score=77.60 Aligned_cols=187 Identities=10% Similarity=0.088 Sum_probs=111.2
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-----CCceEEEEecchhhcc--CC
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-----FEGSYFAQNVREAEET--GG 265 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~--~~ 265 (963)
|....+++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-.. .++.. ....+..... .+
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~~d 89 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNSLD 89 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCCCC
Confidence 455678999999999999999753 345678899999999999999999865321 11100 0000000000 00
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHH--------HcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCC-c
Q 002125 266 IKDLQKELLSKLLNDRNVWNIESQLNR--------LARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRD-K 334 (963)
Q Consensus 266 ~~~l~~~ll~~l~~~~~~~~~~~l~~~--------L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~ 334 (963)
+.. +.+. ....++.+++. ..+++-++|+|+++.. ..+..|+..+....+.+.+|.+|.+ .
T Consensus 90 v~~--------idga-s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~ 160 (563)
T PRK06647 90 VIE--------IDGA-SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160 (563)
T ss_pred eEE--------ecCc-ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChH
Confidence 000 0000 00111211111 2356668999999654 4577777776655566777666543 3
Q ss_pred hhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 335 QVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 335 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
.+.... .....++..+++.++..+.+.+.+..... .-..+.+..|++.++|.+..+
T Consensus 161 kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 332221 23457899999999999888877633222 223466788999999987543
No 146
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.0015 Score=71.26 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=109.5
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc---------------cCCceEEEEecchhh
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR---------------HFEGSYFAQNVREAE 261 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------~f~~~~~~~~~~~~~ 261 (963)
.+++|-+..++.+.+.+..+ .-.+...++|..|+||+++|..+++.+-. .++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 46899999999999998653 23578899999999999999999886521 22333444321000
Q ss_pred ccCCHHHHHHHHHHhhhcCC---CC---CCHHHHHHHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEE
Q 002125 262 ETGGIKDLQKELLSKLLNDR---NV---WNIESQLNRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVI 328 (963)
Q Consensus 262 ~~~~~~~l~~~ll~~l~~~~---~~---~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii 328 (963)
+.... -...+...+... .. +.+..+.+.+ .+++-++|+|+++.. ....+|+..+..-+ .+.+|
T Consensus 82 ~g~~~---~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 82 QGKLI---TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred ccccc---chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 00000 000111111000 01 1222333333 245678999998654 34566666654434 44555
Q ss_pred EEe-CCchhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHH
Q 002125 329 ITT-RDKQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 329 vTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
++| +...+.... .....+++.+++.++..+.+.+.... .. .......++..++|.|.....
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~~---~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--EI---LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--cc---chhHHHHHHHHcCCCHHHHHH
Confidence 554 444444332 34578999999999999999876421 11 111146788999999975544
No 147
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=3e-07 Score=103.84 Aligned_cols=125 Identities=25% Similarity=0.210 Sum_probs=56.1
Q ss_pred CCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEc
Q 002125 660 LTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEI 739 (963)
Q Consensus 660 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l 739 (963)
|.+.+.++|. +..+-.++.-++.|+.|+|++|+++.+. .+..+++|++|||+.| .+..+|..-.. .+ .|+.|.+
T Consensus 166 L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~--gc-~L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMV--GC-KLQLLNL 239 (1096)
T ss_pred Hhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchh--hh-hheeeee
Confidence 4444444433 2223334444445555555555555443 3445555555555555 33333321110 12 2555555
Q ss_pred cCCCCCCcCccccCCCCCccEEEcCCCCCcccC--cccCCCCCCCEEECcCCCCc
Q 002125 740 IDCQNFMILPDELGNLKALETLIIDGTAMREVP--ESLGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 740 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~ 792 (963)
++|..... ..+.+|.+|+.||+++|-|.... .-+..|..|+.|+|.||.+-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 55543321 12445555555555555544221 11334455555555555443
No 148
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.79 E-value=3.3e-05 Score=72.69 Aligned_cols=88 Identities=24% Similarity=0.410 Sum_probs=46.6
Q ss_pred ccEEEcCccccccCchHHHHHHHHhhC-------CCce----------EEeC-CCCCCccchHHHHHHhhhcceeeeeec
Q 002125 27 YGVFLSFRGEDTRDNFTSHLYSALCHN-------NIET----------FIDN-DLKRGDEISQSLLDTIEASAISIIIFS 88 (963)
Q Consensus 27 ~dvfis~~~~d~~~~~~~~l~~~L~~~-------g~~~----------~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s 88 (963)
|.|||||++.|.. .....|...+... .+.. +.+. +....+.|...|.++|..|+++||+++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5899999999942 2667777777663 2221 1222 333455789999999999999999999
Q ss_pred cCccchhhhHHHHHHHHHhhhcCCcEEEeEe
Q 002125 89 ERYASSGWCLDELSKILECKHDYGQIVIPVF 119 (963)
Q Consensus 89 ~~y~~s~~c~~El~~~~~~~~~~~~~v~pvf 119 (963)
++-..|.|+..|+..+++ .+..|+-|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEE
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEE
Confidence 999999999999998876 333466664
No 149
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.78 E-value=0.00023 Score=88.38 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhhhcccccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-C-----C
Q 002125 176 LVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-F-----E 249 (963)
Q Consensus 176 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-----~ 249 (963)
.+++...++..+-. ......++||+++++++.+.|.... ..-+.++|++|+|||++|+.++.++... - .
T Consensus 161 ~l~~~~~~l~~~a~---~~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~ 235 (821)
T CHL00095 161 TLEEFGTNLTKEAI---DGNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED 235 (821)
T ss_pred HHHHHHHHHHHHHH---cCCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 45555555544321 2233568999999999999997432 2345699999999999999999876432 1 2
Q ss_pred ceEEEEecchhhcc----CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH---------HHHH-HH
Q 002125 250 GSYFAQNVREAEET----GGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR---------QIES-LI 315 (963)
Q Consensus 250 ~~~~~~~~~~~~~~----~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---------~~~~-l~ 315 (963)
..+|..+....... ....+-.+.++. +.-..++.+|++|+++..- +... |.
T Consensus 236 ~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~---------------~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLk 300 (821)
T CHL00095 236 KLVITLDIGLLLAGTKYRGEFEERLKRIFD---------------EIQENNNIILVIDEVHTLIGAGAAEGAIDAANILK 300 (821)
T ss_pred CeEEEeeHHHHhccCCCccHHHHHHHHHHH---------------HHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhH
Confidence 34454332221100 001111111111 1112468899999985321 1222 33
Q ss_pred HhccCCCCCceEEEEeCCchhhhc-------CCcceEEEeccCCHHHHHHHHHH
Q 002125 316 RRLDRLASGSRVIITTRDKQVLKN-------CRARQIFRMKELEDADAHKLFCQ 362 (963)
Q Consensus 316 ~~l~~~~~gs~IivTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~ 362 (963)
+.+. ...-++|.+|...+.... .....+++++..+.++..+++..
T Consensus 301 p~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 301 PALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 3332 123455555554432110 11235678899999999888764
No 150
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.77 E-value=0.001 Score=82.51 Aligned_cols=168 Identities=16% Similarity=0.139 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhhhcccccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC------C
Q 002125 176 LVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF------E 249 (963)
Q Consensus 176 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~ 249 (963)
.+++...+...+.. +...+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.++.++.... .
T Consensus 160 ~l~~~~~~l~~~~r---~~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~ 234 (857)
T PRK10865 160 ALKKYTIDLTERAE---QGKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234 (857)
T ss_pred HHHHHhhhHHHHHh---cCCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCC
Confidence 44444445444432 3345679999999999999987532 33566899999999999999999875422 2
Q ss_pred ceEEEEecchhhcc----CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH---------HHHH-HH
Q 002125 250 GSYFAQNVREAEET----GGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR---------QIES-LI 315 (963)
Q Consensus 250 ~~~~~~~~~~~~~~----~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---------~~~~-l~ 315 (963)
..+|..+....... ....+-.++++..+. -.+++++|++|+++... +... +.
T Consensus 235 ~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~--------------~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lk 300 (857)
T PRK10865 235 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLA--------------KQEGNVILFIDELHTMVGAGKADGAMDAGNMLK 300 (857)
T ss_pred CEEEEEehhhhhhccchhhhhHHHHHHHHHHHH--------------HcCCCeEEEEecHHHhccCCCCccchhHHHHhc
Confidence 33333322221100 111111222222111 12468999999986542 1222 33
Q ss_pred HhccCCCCCceEEEEeCCchhhhc-------CCcceEEEeccCCHHHHHHHHHHhh
Q 002125 316 RRLDRLASGSRVIITTRDKQVLKN-------CRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 316 ~~l~~~~~gs~IivTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
+.+. ...-++|-+|...+.... ....+.+.+...+.++..++++...
T Consensus 301 p~l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 301 PALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred chhh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 3332 223455555554432110 0122356778789999999886544
No 151
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00087 Score=79.10 Aligned_cols=186 Identities=16% Similarity=0.110 Sum_probs=107.6
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC-CceEEEEecchhhccCCHHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF-EGSYFAQNVREAEETGGIKDLQK 271 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~ 271 (963)
|....+++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.++..+-..- ...- .++.+ ...+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~---pC~~C-------~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE---PCNEC-------EICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCcc-------HHHH
Confidence 455688999999999999999754 2356778899999999999999988652110 0000 00000 0000
Q ss_pred HHHHh-------hhcCCCC--CCHHHHHHH-----HcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEe-CCc
Q 002125 272 ELLSK-------LLNDRNV--WNIESQLNR-----LARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITT-RDK 334 (963)
Q Consensus 272 ~ll~~-------l~~~~~~--~~~~~l~~~-----L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTT-R~~ 334 (963)
.+... +...... +.+..+.+. ..+++-++|+|+++.. .....|+..+........+|++| ...
T Consensus 81 ~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 00000 0000000 111122222 1345668899999754 45777776665444455555544 433
Q ss_pred hhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 335 QVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 335 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
.+.... .....++..+++.++..+.+...+-.... .-..+.+..|++.++|.+..
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi--~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI--EYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 333221 23467889999999998888776632221 12245677888888887753
No 152
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=1.6e-06 Score=78.43 Aligned_cols=103 Identities=23% Similarity=0.343 Sum_probs=64.7
Q ss_pred cEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCcccc-CCCCCccEEEcCCCCCcccCcccCCCCCCCEEEC
Q 002125 708 FRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDEL-GNLKALETLIIDGTAMREVPESLGQLSSVKNLVL 786 (963)
Q Consensus 708 ~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l-~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L 786 (963)
..++|++| .+..++.....+.....|+..+|++|.+.. +|+.| ..++.++.|+|++|.|+++|..+..++.|+.|++
T Consensus 30 h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 30 HFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34445554 222333333333334455566666665443 33333 3455777888888888888888888888888888
Q ss_pred cCCCCcccCccccCCCCCCEEEeccC
Q 002125 787 TNNNLKRLPESLNQLSSLEYLQLHLR 812 (963)
Q Consensus 787 s~n~l~~lp~~l~~l~~L~~L~L~~~ 812 (963)
+.|.+...|..+..|.+|-.|+...|
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCC
Confidence 88888888877766777776666543
No 153
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.2e-06 Score=89.34 Aligned_cols=139 Identities=20% Similarity=0.233 Sum_probs=81.4
Q ss_pred ccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCC
Q 002125 572 SIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLP 651 (963)
Q Consensus 572 ~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP 651 (963)
-+..+.+|+.|.+.|+..-..+-..+.+-.+|+.|||+.|.-...+ .+.
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-------------------------------~~~ 253 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-------------------------------ALQ 253 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-------------------------------HHH
Confidence 4556777888888887666666666777788888888877522110 011
Q ss_pred ccccCCCCCCeeecccccccccCCc-ccCC-CCCCcEEEecCccc----cccCccccCCCCCcEEEccCCCCCCCCCccc
Q 002125 652 SSLCMFKSLTSLEIIDCQNFMMLPY-ELGN-LKALEMLIVDGTAI----REVPKSLNQLALLFRLKLKNCSELDGISSSI 725 (963)
Q Consensus 652 ~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~-l~~L~~L~L~~n~l----~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~ 725 (963)
--+.+++.|..|+|+.|......-. .+.. -++|..|+|+|+.= +.+..-...+++|..|+|++|..+.. ..+
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~ 331 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCF 331 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHH
Confidence 1244577788888888876543211 1111 13567777777521 12222245677888888887765443 222
Q ss_pred ccccCCCCCcEEEccCCC
Q 002125 726 FSLCMFKSLTSLEIIDCQ 743 (963)
Q Consensus 726 ~~l~~l~~L~~L~l~~~~ 743 (963)
..+-.++.|++|.++.|.
T Consensus 332 ~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 332 QEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHHHhcchheeeehhhhc
Confidence 222236777777777775
No 154
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=3.7e-06 Score=85.77 Aligned_cols=182 Identities=16% Similarity=0.200 Sum_probs=91.0
Q ss_pred CCCCcEEeecCCCCcc--ccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCcc
Q 002125 576 LSNLKKLYIVDCSKLE--SISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSS 653 (963)
Q Consensus 576 L~~L~~L~L~~~~~~~--~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~ 653 (963)
.++++.|+|.+|.... .+..-+.+|+.|++|+|+.|... +.+.++|.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~------------------------------s~I~~lp~- 118 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS------------------------------SDIKSLPL- 118 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC------------------------------CccccCcc-
Confidence 4557777777754321 22233456777788887776532 12334441
Q ss_pred ccCCCCCCeeecccccccc-cCCcccCCCCCCcEEEecCccccccCc---cccC-CCCCcEEEccCCCCCCCCCcccccc
Q 002125 654 LCMFKSLTSLEIIDCQNFM-MLPYELGNLKALEMLIVDGTAIREVPK---SLNQ-LALLFRLKLKNCSELDGISSSIFSL 728 (963)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~L~L~~n~l~~lp~---~~~~-l~~L~~L~L~~~~~l~~lp~~~~~l 728 (963)
.+.+|++|-|.+..+.- ..-..+..++.++.|+++.|++..+-. .+.. -+.+++|....|.... -.+..++
T Consensus 119 --p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~--w~~~~~l 194 (418)
T KOG2982|consen 119 --PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL--WLNKNKL 194 (418)
T ss_pred --cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH--HHHHHhH
Confidence 14567777766544321 122345566666677776665542210 0111 1133333333331100 0000000
Q ss_pred -cCCCCCcEEEccCCCCCCc-CccccCCCCCccEEEcCCCCCcccC--cccCCCCCCCEEECcCCCCc
Q 002125 729 -CMFKSLTSLEIIDCQNFMI-LPDELGNLKALETLIIDGTAMREVP--ESLGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 729 -~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~ 792 (963)
..++++..+-+..|.+... --..+..++.+..|+|+.|+|.+.. +.+..+++|..|.+++|.+.
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 1145666666666654322 1223445566667777777776443 34667777777777777554
No 155
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.73 E-value=7.2e-05 Score=81.53 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=58.8
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhc-cCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHH----------HH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIE----------SQ 289 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~----------~l 289 (963)
+..+|+|++|+||||||+++|+.+.. +|+..+|+..+++. ...+.++++++...+.......... ..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999997654 79999999865542 2356777777764333222221110 11
Q ss_pred HHH--HcCCceEEEEcCCCCHH
Q 002125 290 LNR--LARKKFLIVFDDVTHPR 309 (963)
Q Consensus 290 ~~~--L~~k~~LlVLDdv~~~~ 309 (963)
.++ -.+++++|++|++....
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHH
Confidence 122 35799999999996544
No 156
>CHL00181 cbbX CbbX; Provisional
Probab=97.71 E-value=0.00084 Score=72.32 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=72.4
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhcc-C-CceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCce
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRH-F-EGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKF 298 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~ 298 (963)
..+.++|.+|+|||++|+.+++..... + ...-|+.. + ... +.....+... .....+.+.. ..-
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v----~----~~~----l~~~~~g~~~-~~~~~~l~~a--~gg 124 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV----T----RDD----LVGQYIGHTA-PKTKEVLKKA--MGG 124 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe----c----HHH----HHHHHhccch-HHHHHHHHHc--cCC
Confidence 457899999999999999998864321 1 11112221 1 011 1121111110 0011111111 234
Q ss_pred EEEEcCCCCH-----------HHHHHHHHhccCCCCCceEEEEeCCchhhhc--------CCcceEEEeccCCHHHHHHH
Q 002125 299 LIVFDDVTHP-----------RQIESLIRRLDRLASGSRVIITTRDKQVLKN--------CRARQIFRMKELEDADAHKL 359 (963)
Q Consensus 299 LlVLDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~L 359 (963)
+|++|+++.. +..+.+...+.....+.+||.++........ -.....+++++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 8999999642 3455566655544556677777754332110 01235789999999999999
Q ss_pred HHHhhc
Q 002125 360 FCQCAF 365 (963)
Q Consensus 360 f~~~a~ 365 (963)
+...+-
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 887763
No 157
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.70 E-value=0.0016 Score=66.54 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=42.4
Q ss_pred cccCCCcccchhhHHHHHHhHh--cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 193 QSYNKDLVGVEWRIKEIESLLC--TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
+...+.++|.|.+.+.|.+-.. .......-+.+||..|.|||++++++.+.+..+-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 4445789999999998865433 1223456678899999999999999998776543
No 158
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0012 Score=72.48 Aligned_cols=158 Identities=14% Similarity=0.193 Sum_probs=91.1
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhcc---------------------CCceEEEEecchhhccCCHHHHHHHHHHhh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRH---------------------FEGSYFAQNVREAEETGGIKDLQKELLSKL 277 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 277 (963)
-.+.+.++|+.|+|||++|+.++..+--. .+...++.... ....-.+..+ +++.+.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~~i~id~i-R~l~~~~ 98 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADKTIKVDQV-RELVSFV 98 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCCCCCHHHH-HHHHHHH
Confidence 35678899999999999999999865221 11222221100 0000111111 1121111
Q ss_pred hcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCch-hhhcC-CcceEEEeccCCH
Q 002125 278 LNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQ-VLKNC-RARQIFRMKELED 353 (963)
Q Consensus 278 ~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~ 353 (963)
... -..+++-++|+|+++.. +....++..+..-..++.+|+||.+.. +.... .....+.+.+++.
T Consensus 99 ~~~-----------~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~ 167 (328)
T PRK05707 99 VQT-----------AQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSN 167 (328)
T ss_pred hhc-----------cccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCH
Confidence 110 01233445567999754 456677766655456788888877653 33232 3346899999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 354 ADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 354 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
+++.+.+.... + . ...+.+..++..++|.|+....+
T Consensus 168 ~~~~~~L~~~~-~-~----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 168 EESLQWLQQAL-P-E----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHHHhc-c-c----CChHHHHHHHHHcCCCHHHHHHH
Confidence 99999887653 1 1 11234567788999999754443
No 159
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.70 E-value=6.8e-07 Score=101.03 Aligned_cols=81 Identities=26% Similarity=0.249 Sum_probs=49.2
Q ss_pred CCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEec
Q 002125 731 FKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLH 810 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 810 (963)
++.|+.|+|++|.+...- .+..++.|++|||++|.+..+|.--..-..|+.|+|+||.++++- .+.+|.+|+.|||+
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccchh
Confidence 556666666666654332 456666777777777777766643211123777777777766665 46666777777776
Q ss_pred cCCC
Q 002125 811 LRSP 814 (963)
Q Consensus 811 ~~~~ 814 (963)
+|-+
T Consensus 263 yNll 266 (1096)
T KOG1859|consen 263 YNLL 266 (1096)
T ss_pred Hhhh
Confidence 5543
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.69 E-value=0.00053 Score=85.48 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhhcccccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC------C
Q 002125 176 LVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF------E 249 (963)
Q Consensus 176 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~ 249 (963)
.+++...++..+.. +...+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|..++.++...+ .
T Consensus 155 ~l~~~~~~l~~~~~---~~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~ 229 (852)
T TIGR03346 155 ALEKYARDLTERAR---EGKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKN 229 (852)
T ss_pred HHHHHhhhHHHHhh---CCCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcC
Confidence 34444444443322 3344679999999999999997542 23456899999999999999999875532 2
Q ss_pred ceEEEEecchhhcc----CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHc--CCceEEEEcCCCCHH----------HHHH
Q 002125 250 GSYFAQNVREAEET----GGIKDLQKELLSKLLNDRNVWNIESQLNRLA--RKKFLIVFDDVTHPR----------QIES 313 (963)
Q Consensus 250 ~~~~~~~~~~~~~~----~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~----------~~~~ 313 (963)
..+|..++...... .....- +..+.+.+. +++.+|++|+++... ....
T Consensus 230 ~~~~~l~~~~l~a~~~~~g~~e~~----------------l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~ 293 (852)
T TIGR03346 230 KRLLALDMGALIAGAKYRGEFEER----------------LKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNM 293 (852)
T ss_pred CeEEEeeHHHHhhcchhhhhHHHH----------------HHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHH
Confidence 33343322111000 001111 112222222 468999999986442 1222
Q ss_pred HHHhccCCCCCceEEEEeCCchhhhc-------CCcceEEEeccCCHHHHHHHHHHhh
Q 002125 314 LIRRLDRLASGSRVIITTRDKQVLKN-------CRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 314 l~~~l~~~~~gs~IivTTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
+.+.+. ...-++|-+|.....-.. ....+.+.++..+.++..+++....
T Consensus 294 Lk~~l~--~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 294 LKPALA--RGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hchhhh--cCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 333321 122345545443332110 0123467899999999999887653
No 161
>PRK08116 hypothetical protein; Validated
Probab=97.67 E-value=0.00043 Score=73.78 Aligned_cols=102 Identities=22% Similarity=0.284 Sum_probs=60.0
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLI 300 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~Ll 300 (963)
..+.|+|.+|+|||.||.++++.+..+...++|+. ...+...+....... .......+.+.+.+-. ||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~-~~~~~~~~~~~l~~~d-lL 182 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSS-GKEDENEIIRSLVNAD-LL 182 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcc-ccccHHHHHHHhcCCC-EE
Confidence 45889999999999999999998876644455553 122333333332211 1123334555666555 89
Q ss_pred EEcCCCC--HH--HHHHHHHhccC-CCCCceEEEEeCCc
Q 002125 301 VFDDVTH--PR--QIESLIRRLDR-LASGSRVIITTRDK 334 (963)
Q Consensus 301 VLDdv~~--~~--~~~~l~~~l~~-~~~gs~IivTTR~~ 334 (963)
||||+.. .. ..+.+...+.. ...+..+||||...
T Consensus 183 viDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 183 ILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 9999932 22 22233332221 24566799999743
No 162
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=9.2e-07 Score=90.07 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=100.0
Q ss_pred CCCCCCeeecccccccccCCcccCCCCCCcEEEecCc-ccccc--CccccCCCCCcEEEccCCCCCCCCCcccccccCCC
Q 002125 656 MFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGT-AIREV--PKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFK 732 (963)
Q Consensus 656 ~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n-~l~~l--p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~ 732 (963)
.+..|+.|.|.++.+...+-..+..-.+|+.|+|+.+ .+++. .--+.+++.|..|+|+.|......-..+.. ..-+
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~-hise 286 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA-HISE 286 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh-hhch
Confidence 3566777777777766666666777778888888774 34422 222677888999999988654432111100 0125
Q ss_pred CCcEEEccCCCCCC---cCccccCCCCCccEEEcCCCCC-c-ccCcccCCCCCCCEEECcCCCCcccCc---cccCCCCC
Q 002125 733 SLTSLEIIDCQNFM---ILPDELGNLKALETLIIDGTAM-R-EVPESLGQLSSVKNLVLTNNNLKRLPE---SLNQLSSL 804 (963)
Q Consensus 733 ~L~~L~l~~~~~~~---~~p~~l~~l~~L~~L~L~~n~l-~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~---~l~~l~~L 804 (963)
+|+.|+++|+...- .+..-...+++|..|||++|.. + ..-..|..++.|++|.|+.|..- +|+ .+...|+|
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcce
Confidence 78888898885321 1222235788999999998743 3 34455778899999999998532 333 25777888
Q ss_pred CEEEecc
Q 002125 805 EYLQLHL 811 (963)
Q Consensus 805 ~~L~L~~ 811 (963)
.+|++.+
T Consensus 366 ~yLdv~g 372 (419)
T KOG2120|consen 366 VYLDVFG 372 (419)
T ss_pred EEEEecc
Confidence 8888876
No 163
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.64 E-value=0.0013 Score=68.58 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=61.8
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCH
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNI 286 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 286 (963)
..+.++...-......+.++|.+|+|||+||.++++.+...-..++++. ..++...+-.... ......
T Consensus 86 ~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it----------~~~l~~~l~~~~~--~~~~~~ 153 (244)
T PRK07952 86 SKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT----------VADIMSAMKDTFS--NSETSE 153 (244)
T ss_pred HHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----------HHHHHHHHHHHHh--hccccH
Confidence 3444444322233457889999999999999999998766655555553 1233333322221 111233
Q ss_pred HHHHHHHcCCceEEEEcCCCCH--HHHH--HHHHhcc-CCCCCceEEEEeCC
Q 002125 287 ESQLNRLARKKFLIVFDDVTHP--RQIE--SLIRRLD-RLASGSRVIITTRD 333 (963)
Q Consensus 287 ~~l~~~L~~k~~LlVLDdv~~~--~~~~--~l~~~l~-~~~~gs~IivTTR~ 333 (963)
+.+.+.+. +.=+||+||+... .+|+ .+...+. .....-.+||||-.
T Consensus 154 ~~~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 154 EQLLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34555565 3458888999432 2232 2222221 11234457777763
No 164
>CHL00176 ftsH cell division protein; Validated
Probab=97.63 E-value=0.0008 Score=80.07 Aligned_cols=172 Identities=15% Similarity=0.173 Sum_probs=97.0
Q ss_pred cCCCcccchhhHHHHHHhHh---c-------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccC
Q 002125 195 YNKDLVGVEWRIKEIESLLC---T-------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETG 264 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 264 (963)
..++++|.++..+++.+.+. . +....+-|.++|++|+|||+||++++......| +. +. .+
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~-is-~s--- 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FS-IS-GS--- 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----ee-cc-HH---
Confidence 34568888888777766653 1 112245689999999999999999988653222 21 00 00
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHH-HHHHHHcCCceEEEEcCCCCHH----------------HHHHHHHhccCC--CCCc
Q 002125 265 GIKDLQKELLSKLLNDRNVWNIE-SQLNRLARKKFLIVFDDVTHPR----------------QIESLIRRLDRL--ASGS 325 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~l~~~--~~gs 325 (963)
.+..... +. ....+. .+.......+++|++||++... .+..++..+..+ ..+-
T Consensus 251 ---~f~~~~~----g~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 251 ---EFVEMFV----GV-GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred ---HHHHHhh----hh-hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 0110000 00 001111 2333345678999999996431 133344333322 2355
Q ss_pred eEEEEeCCchhhh-----cCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcC
Q 002125 326 RVIITTRDKQVLK-----NCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQG 387 (963)
Q Consensus 326 ~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g 387 (963)
.||.||....... ....+..+.++..+.++-.++++.++-... .........+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSPDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cchhHHHHHHHhcCCC
Confidence 6677776543322 112346789999999999999988773311 1122335667777766
No 165
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00097 Score=79.08 Aligned_cols=184 Identities=16% Similarity=0.158 Sum_probs=107.5
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc-cC----Cc----------------e
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR-HF----EG----------------S 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f----~~----------------~ 251 (963)
|....++||.+..++.|...+..+ .-.+.+.++|..|+||||+|+.++..+-. +. ++ .
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 455678999999999999988743 23466789999999999999999886531 11 00 0
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Iiv 329 (963)
..+. .....++..+ +++...+... -..+++-++|+|+++.. .....|+..+......+.+|+
T Consensus 91 ~eid----~~s~~~v~~i-r~l~~~~~~~-----------p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl 154 (576)
T PRK14965 91 FEID----GASNTGVDDI-RELRENVKYL-----------PSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF 154 (576)
T ss_pred eeee----ccCccCHHHH-HHHHHHHHhc-----------cccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 0010 0000111111 1111111100 01244557889999754 346667766655455666665
Q ss_pred Ee-CCchhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch-hHHHh
Q 002125 330 TT-RDKQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL-ALKVL 395 (963)
Q Consensus 330 TT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~l 395 (963)
+| ....+.... .....+++.+++.++..+.+...+-... ..-..+.+..+++.++|... |+..+
T Consensus 155 ~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 155 ATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG--ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 54 444443322 2345788999999998888776552211 12234567788888888663 44433
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.60 E-value=0.00084 Score=81.36 Aligned_cols=149 Identities=17% Similarity=0.219 Sum_probs=85.2
Q ss_pred CCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC------CceEEEEecchhhccCCHHHH
Q 002125 196 NKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~l 269 (963)
.+.++||+++++++.+.|.... ..-+.++|.+|+|||++|+.++.++...- +..+|..+. ..+
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~~l 253 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------GSL 253 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------HHH
Confidence 3569999999999999887532 23446899999999999999998753321 233332211 111
Q ss_pred HHHHHHhhhcCCCC----CCHHHHHHHH-cCCceEEEEcCCCCH----------HHHHH-HHHhccCCCCCceEEEEeCC
Q 002125 270 QKELLSKLLNDRNV----WNIESQLNRL-ARKKFLIVFDDVTHP----------RQIES-LIRRLDRLASGSRVIITTRD 333 (963)
Q Consensus 270 ~~~ll~~l~~~~~~----~~~~~l~~~L-~~k~~LlVLDdv~~~----------~~~~~-l~~~l~~~~~gs~IivTTR~ 333 (963)
+. +.... ..+..+.+.+ +.++.+|++|+++.. .+... +.+.+. ...-++|-+|..
T Consensus 254 ----la---G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~ 324 (758)
T PRK11034 254 ----LA---GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTY 324 (758)
T ss_pred ----hc---ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCCh
Confidence 10 00000 1112222222 345789999999642 22222 333332 223445555543
Q ss_pred chhhhc-------CCcceEEEeccCCHHHHHHHHHHhh
Q 002125 334 KQVLKN-------CRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 334 ~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
.+.... ....+.++++.++.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 332110 0123579999999999999988654
No 167
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.001 Score=70.54 Aligned_cols=172 Identities=17% Similarity=0.269 Sum_probs=100.2
Q ss_pred CCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCC
Q 002125 197 KDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGG 265 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 265 (963)
..+=|-++++++|.+.... +-+.++=|.+||++|.|||-||++|+++....| +..++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccH------
Confidence 4455677777777766542 224567789999999999999999998754443 433222
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHH-cCCceEEEEcCCCCHH----------------HHHHHHHhccCCCC--Cce
Q 002125 266 IKDLQKELLSKLLNDRNVWNIESQLNRL-ARKKFLIVFDDVTHPR----------------QIESLIRRLDRLAS--GSR 326 (963)
Q Consensus 266 ~~~l~~~ll~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~~----------------~~~~l~~~l~~~~~--gs~ 326 (963)
++.+..+. +.. .-+..+.+.. ...+..|.+|.++... .+-+|+..++.|.+ .-+
T Consensus 220 --ElVqKYiG----EGa-RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvK 292 (406)
T COG1222 220 --ELVQKYIG----EGA-RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVK 292 (406)
T ss_pred --HHHHHHhc----cch-HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeE
Confidence 12211111 100 0011122222 2568999999886421 13445555655544 467
Q ss_pred EEEEeCCchhh-----hcCCcceEEEeccCCHHHHHHHHHHhhcCCCC-CCCcHHHHHHHHHHHhcCCch
Q 002125 327 VIITTRDKQVL-----KNCRARQIFRMKELEDADAHKLFCQCAFGGDH-PDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 327 IivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~PL 390 (963)
||..|--..++ ..-..++.++++.-+.+.-.++|.-|+-+-.. ..-+ .+.+++.+.|.--
T Consensus 293 VI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sG 358 (406)
T COG1222 293 VIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSG 358 (406)
T ss_pred EEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCch
Confidence 88777644443 22245678899977777778888877743222 2223 3456666666653
No 168
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.56 E-value=0.0013 Score=70.30 Aligned_cols=161 Identities=19% Similarity=0.269 Sum_probs=99.9
Q ss_pred CCCcccchhhHHHHHHhHhcCCCC-eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHH
Q 002125 196 NKDLVGVEWRIKEIESLLCTGFAG-VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELL 274 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 274 (963)
.+.+.+|+.++..+..++...+.. +..|.|+|.+|.|||.+.+++++... ...+|+.. -+.+....+.++++
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~----~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNC----VECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---Ccceeeeh----HHhccHHHHHHHHH
Confidence 467899999999999999755543 44568999999999999999998652 24568863 33466777888888
Q ss_pred Hhhh-cCCCCCCH----H-------HHHH--HHc--CCceEEEEcCCCCHHHHHHH-----HHhccCCCCCceEEEEeCC
Q 002125 275 SKLL-NDRNVWNI----E-------SQLN--RLA--RKKFLIVFDDVTHPRQIESL-----IRRLDRLASGSRVIITTRD 333 (963)
Q Consensus 275 ~~l~-~~~~~~~~----~-------~l~~--~L~--~k~~LlVLDdv~~~~~~~~l-----~~~l~~~~~gs~IivTTR~ 333 (963)
.+.. ...+.... + .+.+ ... ++.++||||+++...+.++. .....-.....-+|+++-.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 8774 22222111 1 1111 122 46899999999877653332 2111111222334444432
Q ss_pred c---hhhhcCCcc--eEEEeccCCHHHHHHHHHHh
Q 002125 334 K---QVLKNCRAR--QIFRMKELEDADAHKLFCQC 363 (963)
Q Consensus 334 ~---~v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~ 363 (963)
. .-....+.. .++..+..+.+|..+++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2 112222332 35677889999999987543
No 169
>PRK08181 transposase; Validated
Probab=97.55 E-value=0.00046 Score=73.14 Aligned_cols=99 Identities=21% Similarity=0.241 Sum_probs=56.4
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLI 300 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~Ll 300 (963)
.-+.|+|.+|+|||.||.++.+....+...+.|+. ..++...+.... .....+...+.+. +.=||
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~----------~~~L~~~l~~a~----~~~~~~~~l~~l~-~~dLL 171 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR----------TTDLVQKLQVAR----RELQLESAIAKLD-KFDLL 171 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee----------HHHHHHHHHHHH----hCCcHHHHHHHHh-cCCEE
Confidence 45899999999999999999997766555556654 123333332221 1123333444443 34599
Q ss_pred EEcCCCCH----HHHHHHHHhccCCCCCceEEEEeCCc
Q 002125 301 VFDDVTHP----RQIESLIRRLDRLASGSRVIITTRDK 334 (963)
Q Consensus 301 VLDdv~~~----~~~~~l~~~l~~~~~gs~IivTTR~~ 334 (963)
||||+... ...+.+...+...-.+..+||||...
T Consensus 172 IIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 172 ILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 99999422 22223333322111124588888754
No 170
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.54 E-value=6.6e-05 Score=55.26 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=33.6
Q ss_pred CCCCEEECcCCCCcccCccccCCCCCCEEEeccCCCCCCc
Q 002125 779 SSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLRSPRKLT 818 (963)
Q Consensus 779 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~~~L~ 818 (963)
++|++|+|++|+|+.+|..+++|++|+.|++++|....+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4799999999999999988999999999999997766443
No 171
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.54 E-value=0.00019 Score=75.21 Aligned_cols=87 Identities=20% Similarity=0.170 Sum_probs=57.3
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhc-cCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC-CC---H-------H
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV-WN---I-------E 287 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~---~-------~ 287 (963)
-..++|.|++|+|||||++.+++.+.. +|+..+|+..+.+ ...++.++++++...+...... .. . +
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999997643 6898989874433 1256788888873333222111 11 1 1
Q ss_pred HHHH-HHcCCceEEEEcCCCCH
Q 002125 288 SQLN-RLARKKFLIVFDDVTHP 308 (963)
Q Consensus 288 ~l~~-~L~~k~~LlVLDdv~~~ 308 (963)
.... +-.++++++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 1111 13479999999998654
No 172
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.50 E-value=0.00095 Score=78.32 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=93.9
Q ss_pred cCCCcccchhhHHHHHHhHh---c-------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccC
Q 002125 195 YNKDLVGVEWRIKEIESLLC---T-------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETG 264 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 264 (963)
..++++|.+...+++.+++. . +....+-+.++|++|+|||++|++++......| +. + +
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i---~--- 120 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I---S--- 120 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c---c---
Confidence 34567888877776665543 1 123345688999999999999999987643222 11 0 0
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHH-HHHHHHcCCceEEEEcCCCCHH----------------HHHHHHHhccCC--CCCc
Q 002125 265 GIKDLQKELLSKLLNDRNVWNIE-SQLNRLARKKFLIVFDDVTHPR----------------QIESLIRRLDRL--ASGS 325 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~l~~~--~~gs 325 (963)
...+... ..+. ....+. .+.......+.+|++|+++... .+..++..+... ..+-
T Consensus 121 -~~~~~~~----~~g~-~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 121 -GSDFVEM----FVGV-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred -HHHHHHH----Hhcc-cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 0011100 0000 001111 1222234567899999985421 122333333322 2344
Q ss_pred eEEEEeCCchhh-----hcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 326 RVIITTRDKQVL-----KNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 326 ~IivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
.||.||...... .....+..++++..+.++-.+++..+.-+..... ......+++.+.|.-
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~s 260 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFS 260 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCC
Confidence 566666554321 1123456889999999999999987763322111 122457777777643
No 173
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.0021 Score=71.18 Aligned_cols=133 Identities=16% Similarity=0.218 Sum_probs=81.7
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCce
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKF 298 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~ 298 (963)
....+.|||..|.|||.|++++.+...+..+....+.. + .......+...+.. ...+..++.. .-=
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~----~----se~f~~~~v~a~~~----~~~~~Fk~~y--~~d 177 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL----T----SEDFTNDFVKALRD----NEMEKFKEKY--SLD 177 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec----c----HHHHHHHHHHHHHh----hhHHHHHHhh--ccC
Confidence 46789999999999999999999988777764333321 1 11222222222221 2344555555 344
Q ss_pred EEEEcCCCCHH----HHHHHHHhccCC-CCCceEEEEeCCc---------hhhhcCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 299 LIVFDDVTHPR----QIESLIRRLDRL-ASGSRVIITTRDK---------QVLKNCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 299 LlVLDdv~~~~----~~~~l~~~l~~~-~~gs~IivTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
++++||++-.. .-+++...+... ..|-.||+|++.. .+.......-++++.+++.+.....+.+.+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 88899985421 123333322211 3445899999643 222233445689999999999999999876
Q ss_pred c
Q 002125 365 F 365 (963)
Q Consensus 365 ~ 365 (963)
-
T Consensus 258 ~ 258 (408)
T COG0593 258 E 258 (408)
T ss_pred H
Confidence 3
No 174
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.48 E-value=0.0015 Score=75.28 Aligned_cols=174 Identities=17% Similarity=0.141 Sum_probs=92.8
Q ss_pred CCCcccchhhHHHHHHhHh--------cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhc-cCC-
Q 002125 196 NKDLVGVEWRIKEIESLLC--------TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEE-TGG- 265 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~--------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~-~~~- 265 (963)
.+++.|.+...+.+.+... .+-...+-|.++|++|+|||.+|+++++.....| +..+...... ..+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGe 302 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGE 302 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccCh
Confidence 3567888776666654221 1223456789999999999999999998754332 1111111000 000
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH--------------HHHHHHHhccCCCCCceEEEEe
Q 002125 266 IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR--------------QIESLIRRLDRLASGSRVIITT 331 (963)
Q Consensus 266 ~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--------------~~~~l~~~l~~~~~gs~IivTT 331 (963)
-....++++ ...-...+++|++|+++..- .+..+...+.....+--||.||
T Consensus 303 se~~l~~~f---------------~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 303 SESRMRQMI---------------RIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred HHHHHHHHH---------------HHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 011111111 11123478999999986421 1222333333223344566677
Q ss_pred CCchhh-----hcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 332 RDKQVL-----KNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 332 R~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
.....+ .....+..+.++..+.++-.++|..+.-+.. +..........+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCC
Confidence 654322 2223457889999999999999988763322 11100112455666665554
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.46 E-value=0.00092 Score=78.96 Aligned_cols=54 Identities=26% Similarity=0.252 Sum_probs=44.4
Q ss_pred cccccCCCcccchhhHHHHHHhHhcCC---CCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 191 TFQSYNKDLVGVEWRIKEIESLLCTGF---AGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 191 ~~~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..|....+++|-++.++++..++.... ...+++.|+|++|+||||+++.++..+
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 346667889999999999999987432 334689999999999999999998754
No 176
>PRK12377 putative replication protein; Provisional
Probab=97.44 E-value=0.0011 Score=69.44 Aligned_cols=100 Identities=24% Similarity=0.152 Sum_probs=56.3
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFL 299 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~L 299 (963)
...+.|+|.+|+|||.||.++++.+..+...+.++.. .++...+-..... ......+.+.+ .+.=|
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~----------~~l~~~l~~~~~~---~~~~~~~l~~l-~~~dL 166 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV----------PDVMSRLHESYDN---GQSGEKFLQEL-CKVDL 166 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH----------HHHHHHHHHHHhc---cchHHHHHHHh-cCCCE
Confidence 3578999999999999999999988766555666641 2233333222211 11222333444 34568
Q ss_pred EEEcCCCCH----HHHHHHHHhccC-CCCCceEEEEeCC
Q 002125 300 IVFDDVTHP----RQIESLIRRLDR-LASGSRVIITTRD 333 (963)
Q Consensus 300 lVLDdv~~~----~~~~~l~~~l~~-~~~gs~IivTTR~ 333 (963)
|||||+... .+.+.+...+.. ....--+||||-.
T Consensus 167 LiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 167 LVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999322 222233322221 1233446777763
No 177
>PRK10536 hypothetical protein; Provisional
Probab=97.39 E-value=0.0011 Score=68.68 Aligned_cols=131 Identities=16% Similarity=0.234 Sum_probs=75.9
Q ss_pred CCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH-H-hccCCceEEEEecchhhcc-----CCHHH
Q 002125 196 NKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK-I-SRHFEGSYFAQNVREAEET-----GGIKD 268 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~~~~-----~~~~~ 268 (963)
...+.+|......+..++.. ..+|.+.|.+|.|||+||.+++.. + ...|+..+.....-+..+. .++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 35678888888888888853 248999999999999999998874 3 4445554444322111111 11111
Q ss_pred HH----H---HHHHhhhcCCCCCCHHH------------HHHHHcCCc---eEEEEcCCCCHH--HHHHHHHhccCCCCC
Q 002125 269 LQ----K---ELLSKLLNDRNVWNIES------------QLNRLARKK---FLIVFDDVTHPR--QIESLIRRLDRLASG 324 (963)
Q Consensus 269 l~----~---~ll~~l~~~~~~~~~~~------------l~~~L~~k~---~LlVLDdv~~~~--~~~~l~~~l~~~~~g 324 (963)
-. . +.+..+.+. ...+. -...++++. -+||+|.+.+.. +...++ ...+.+
T Consensus 130 K~~p~~~pi~D~L~~~~~~---~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~ 203 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGA---SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHhCh---HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCC
Confidence 11 1 111111111 11111 123456654 499999996543 444444 445799
Q ss_pred ceEEEEeCCchh
Q 002125 325 SRVIITTRDKQV 336 (963)
Q Consensus 325 s~IivTTR~~~v 336 (963)
|++|+|--..++
T Consensus 204 sk~v~~GD~~Qi 215 (262)
T PRK10536 204 VTVIVNGDITQC 215 (262)
T ss_pred CEEEEeCChhhc
Confidence 999999876543
No 178
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.39 E-value=0.0025 Score=72.13 Aligned_cols=161 Identities=18% Similarity=0.177 Sum_probs=94.5
Q ss_pred hHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCC
Q 002125 205 RIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVW 284 (963)
Q Consensus 205 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 284 (963)
-+.++.+.+... ..++.|.|+-++||||+++.+.....+. .+++...........+.+.......
T Consensus 25 ~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~--------- 89 (398)
T COG1373 25 LLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAYIE--------- 89 (398)
T ss_pred hhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHHHH---------
Confidence 344444444322 2299999999999999997666554333 4555422111111111111111111
Q ss_pred CHHHHHHHHcCCceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchhhhc------CCcceEEEeccCCHHHHHH
Q 002125 285 NIESQLNRLARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVLKN------CRARQIFRMKELEDADAHK 358 (963)
Q Consensus 285 ~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~------~~~~~~~~l~~L~~~ea~~ 358 (963)
.-..++..|+||.|.....|+.....+...++. +|++|+-+...... .+....+++-||+..|-..
T Consensus 90 -------~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 90 -------LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred -------hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 111177899999999999999988887766666 89988887644322 1335688999999999887
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHH
Q 002125 359 LFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 359 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
+-...+ ... .. ...-+-.-..||.|-++..
T Consensus 162 ~~~~~~----~~~-~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 162 LKGEEI----EPS-KL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred hccccc----chh-HH-HHHHHHHHHhCCCcHHHhC
Confidence 532000 000 11 1112223347899987654
No 179
>PRK09183 transposase/IS protein; Provisional
Probab=97.38 E-value=0.00057 Score=72.54 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=52.6
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLI 300 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~Ll 300 (963)
..+.|+|.+|+|||+||..++......-..+.|+. ...+...+...... ............+.-++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~----------~~~l~~~l~~a~~~----~~~~~~~~~~~~~~dlL 168 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT----------AADLLLQLSTAQRQ----GRYKTTLQRGVMAPRLL 168 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe----------HHHHHHHHHHHHHC----CcHHHHHHHHhcCCCEE
Confidence 46789999999999999999886544433344443 11222222111111 12222222222455699
Q ss_pred EEcCCCC----HHHHHHHHHhccC-CCCCceEEEEeCCc
Q 002125 301 VFDDVTH----PRQIESLIRRLDR-LASGSRVIITTRDK 334 (963)
Q Consensus 301 VLDdv~~----~~~~~~l~~~l~~-~~~gs~IivTTR~~ 334 (963)
|+||+.. .++.+.+...+.. ...++ +||||...
T Consensus 169 iiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 169 IIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred EEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 9999953 2332233333221 12344 78888743
No 180
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.38 E-value=0.0005 Score=75.56 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=60.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC----CCHH-------
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV----WNIE------- 287 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~----~~~~------- 287 (963)
-+.++|+|++|+|||||++.+++.+... |+..+|+..+++ ....+.++++.++..+...... ....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3578999999999999999999977555 998999875433 1256788888885544332222 1111
Q ss_pred HH-HHHHcCCceEEEEcCCCCHHH
Q 002125 288 SQ-LNRLARKKFLIVFDDVTHPRQ 310 (963)
Q Consensus 288 ~l-~~~L~~k~~LlVLDdv~~~~~ 310 (963)
.. ..+-.+++++|++|++.....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHHH
Confidence 11 111357999999999966543
No 181
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=4.6e-05 Score=77.98 Aligned_cols=179 Identities=16% Similarity=0.044 Sum_probs=99.7
Q ss_pred ccceeeeEEecCCccCCC------ccccCCCCcEEeecCCCCcc---ccccccCCCCCccEEeCcCCccccccCCCCccc
Q 002125 554 CHVYTLELVKVGIKELPS------SIECLSNLKKLYIVDCSKLE---SISSSIFKLKSLQSIEISNCSILKRFLEIPSCN 624 (963)
Q Consensus 554 ~~l~~L~~l~~~~~~lp~------~~~~L~~L~~L~L~~~~~~~---~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~ 624 (963)
..+..++.+++..+.+++ -+.+||+|+.|+++.|+... ++| ..+.+|++|-|.+.....
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w--------- 135 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSW--------- 135 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCCh---------
Confidence 445666777777777765 46789999999999876533 333 456789999887753211
Q ss_pred cCCCCccccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCC--cccCCC-CCCcEEEecCccccc---cC
Q 002125 625 IDGGIGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLP--YELGNL-KALEMLIVDGTAIRE---VP 698 (963)
Q Consensus 625 l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p--~~~~~l-~~L~~L~L~~n~l~~---lp 698 (963)
+...+.+..+|.++.|+++.|+.....- +..... +.+.+|+..+|.... +-
T Consensus 136 -----------------------~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 136 -----------------------TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred -----------------------hhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH
Confidence 1222334456777777777774322110 011111 134444444443221 10
Q ss_pred ccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCc-CccccCCCCCccEEEcCCCCCc
Q 002125 699 KSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMI-LPDELGNLKALETLIIDGTAMR 769 (963)
Q Consensus 699 ~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~L~~n~l~ 769 (963)
.--.-++++..+-+..|+.-. ....- +...++.+..|+|+.+++-.- --+.+.++++|..|.++++.+.
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~-~s~ek-~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKT-ESSEK-GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hHHhhcccchheeeecCcccc-hhhcc-cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 111224566666666663221 11100 111256666778877765332 1145788999999999999876
No 182
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.34 E-value=0.00043 Score=68.89 Aligned_cols=73 Identities=33% Similarity=0.344 Sum_probs=44.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFL 299 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~L 299 (963)
..-+.|+|.+|+|||.||.++.+.+..+-..+.|+. ..++...+ .........+.+.+.+.+- =|
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~----------~~~L~~~l----~~~~~~~~~~~~~~~l~~~-dl 111 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT----------ASDLLDEL----KQSRSDGSYEELLKRLKRV-DL 111 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE----------HHHHHHHH----HCCHCCTTHCHHHHHHHTS-SC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee----------cCceeccc----cccccccchhhhcCccccc-cE
Confidence 356899999999999999999987665544556664 12333333 2222223333455556544 46
Q ss_pred EEEcCCCC
Q 002125 300 IVFDDVTH 307 (963)
Q Consensus 300 lVLDdv~~ 307 (963)
|||||+..
T Consensus 112 LilDDlG~ 119 (178)
T PF01695_consen 112 LILDDLGY 119 (178)
T ss_dssp EEEETCTS
T ss_pred ecccccce
Confidence 77999843
No 183
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=1.2e-05 Score=72.88 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=45.1
Q ss_pred CCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCc
Q 002125 731 FKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPE 796 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 796 (963)
++.++.|++.+|.+ ..+|+.+..++.|+.|+++.|.+...|.-+..|.+|-.|+..+|.+..||-
T Consensus 76 f~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 76 FPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred cchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 34556666665554 335666777777777777777777777777777777777777777776663
No 184
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.34 E-value=0.0018 Score=60.99 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEccCCCChhhHHHHHHHHHh
Q 002125 223 LGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999864
No 185
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.0091 Score=60.89 Aligned_cols=175 Identities=18% Similarity=0.212 Sum_probs=98.0
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC--C-CHHHHHHHH-
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV--W-NIESQLNRL- 293 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~-~~~~l~~~L- 293 (963)
++.+++.++|.-|.|||.++++....+.+.=-.++.+. ........+...+...+...... . ..+.+.+.|
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 45679999999999999999955544332222222222 12234455666666666552222 1 122222222
Q ss_pred ----cCCc-eEEEEcCCCCH--HHHHHHH---HhccCCCCCceEEEEeCCc-------hhhhcCC-cceE-EEeccCCHH
Q 002125 294 ----ARKK-FLIVFDDVTHP--RQIESLI---RRLDRLASGSRVIITTRDK-------QVLKNCR-ARQI-FRMKELEDA 354 (963)
Q Consensus 294 ----~~k~-~LlVLDdv~~~--~~~~~l~---~~l~~~~~gs~IivTTR~~-------~v~~~~~-~~~~-~~l~~L~~~ 354 (963)
++++ +.+++|+..+. +.++.+. ..-...+.--+|+..-..+ .+....+ ...+ |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 4566 99999998654 3344443 2211111112233333221 0111111 1123 999999999
Q ss_pred HHHHHHHHhhcCCCCCCCc-HHHHHHHHHHHhcCCchhHHHhhh
Q 002125 355 DAHKLFCQCAFGGDHPDAS-HIELTDKAIKYAQGVPLALKVLGH 397 (963)
Q Consensus 355 ea~~Lf~~~a~~~~~~~~~-~~~~~~~i~~~~~g~PLal~~l~~ 397 (963)
+...++..+.-+...+.+- ..+....|.....|.|.++..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9998888776444333332 345677889999999999887654
No 186
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=7.5e-05 Score=89.47 Aligned_cols=111 Identities=24% Similarity=0.166 Sum_probs=76.0
Q ss_pred CCCCCCeeeccccccc-ccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCC
Q 002125 656 MFKSLTSLEIIDCQNF-MMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSL 734 (963)
Q Consensus 656 ~l~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L 734 (963)
.||+|+.|.+++-.+. ..+-....++++|..||+++++++.+ .++++|++|+.|.+.+-.... - ..+..+-+|++|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~-~-~~l~~LF~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFES-Y-QDLIDLFNLKKL 222 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCc-h-hhHHHHhcccCC
Confidence 3789999999875442 23444567889999999999999988 778999999999988754322 1 111223338888
Q ss_pred cEEEccCCCCCCcC------ccccCCCCCccEEEcCCCCCc
Q 002125 735 TSLEIIDCQNFMIL------PDELGNLKALETLIIDGTAMR 769 (963)
Q Consensus 735 ~~L~l~~~~~~~~~------p~~l~~l~~L~~L~L~~n~l~ 769 (963)
+.||+|........ -+.-..||+|+.||.|++.+.
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 89998876544321 112234777888888877665
No 187
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.29 E-value=0.00042 Score=67.51 Aligned_cols=80 Identities=25% Similarity=0.318 Sum_probs=53.2
Q ss_pred CCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc--ccCCCCCCCEEECcCCCCcccCc----cccCCCCC
Q 002125 731 FKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE--SLGQLSSVKNLVLTNNNLKRLPE----SLNQLSSL 804 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L 804 (963)
++.|.+|.+.+|.+...-|..-.-+++|+.|.|.+|+|.++-+ -+..++.|++|.+-+|..+.-+. .+..+|+|
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence 5666667776666666555544556777777777777775532 35667788888888887775542 25666777
Q ss_pred CEEEec
Q 002125 805 EYLQLH 810 (963)
Q Consensus 805 ~~L~L~ 810 (963)
+.||.+
T Consensus 143 ~~LDF~ 148 (233)
T KOG1644|consen 143 RTLDFQ 148 (233)
T ss_pred eEeehh
Confidence 777654
No 188
>PRK06526 transposase; Provisional
Probab=97.29 E-value=0.00062 Score=71.80 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=52.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFL 299 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~L 299 (963)
.+-+.|+|++|+|||+||.++......+-..+.|+. ...+..++.... ...........+. +.-+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t----------~~~l~~~l~~~~----~~~~~~~~l~~l~-~~dl 162 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT----------AAQWVARLAAAH----HAGRLQAELVKLG-RYPL 162 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh----------HHHHHHHHHHHH----hcCcHHHHHHHhc-cCCE
Confidence 356899999999999999999987654433333432 123333332221 1112222223332 3468
Q ss_pred EEEcCCCCH----HHHHHHHHhccC-CCCCceEEEEeCCc
Q 002125 300 IVFDDVTHP----RQIESLIRRLDR-LASGSRVIITTRDK 334 (963)
Q Consensus 300 lVLDdv~~~----~~~~~l~~~l~~-~~~gs~IivTTR~~ 334 (963)
||+||+... ...+.+...+.. ...++ +|+||...
T Consensus 163 LIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 163 LIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred EEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 999999632 222223222211 12344 88888754
No 189
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.011 Score=64.39 Aligned_cols=166 Identities=16% Similarity=0.125 Sum_probs=95.7
Q ss_pred HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc------------------CCceEEEEecchhhccCCHH
Q 002125 206 IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH------------------FEGSYFAQNVREAEETGGIK 267 (963)
Q Consensus 206 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------------------f~~~~~~~~~~~~~~~~~~~ 267 (963)
.+.+...+..+ .-...+.++|+.|+||+++|..++..+--. .+...|+.-. .+..+.
T Consensus 13 ~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~---p~~~~~- 87 (319)
T PRK08769 13 YDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI---PNRTGD- 87 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC---CCcccc-
Confidence 34555555432 334678899999999999999998854211 1111121100 000000
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHH---HHH-----cCCceEEEEcCCCCHH--HHHHHHHhccCCCCCceEEEEeCCc-hh
Q 002125 268 DLQKELLSKLLNDRNVWNIESQL---NRL-----ARKKFLIVFDDVTHPR--QIESLIRRLDRLASGSRVIITTRDK-QV 336 (963)
Q Consensus 268 ~l~~~ll~~l~~~~~~~~~~~l~---~~L-----~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR~~-~v 336 (963)
.....-.++.++ +.+ .+++-++|+|+++... ...+|+..+..-.+++.+|++|.+. .+
T Consensus 88 -----------k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 88 -----------KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARL 156 (319)
T ss_pred -----------cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhC
Confidence 000001122222 222 2456689999997653 4566666665546677777777654 44
Q ss_pred hhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 337 LKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
+... .....+.+.+++.+++.+.+.... . . ...+..++..++|.|+....+
T Consensus 157 LpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~-~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 157 PATIRSRCQRLEFKLPPAHEALAWLLAQG----V-S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred chHHHhhheEeeCCCcCHHHHHHHHHHcC----C-C---hHHHHHHHHHcCCCHHHHHHH
Confidence 4332 335688999999999998886431 1 1 223667899999999865443
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.27 E-value=0.0019 Score=79.62 Aligned_cols=172 Identities=18% Similarity=0.193 Sum_probs=92.5
Q ss_pred CCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchh-hcc
Q 002125 196 NKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREA-EET 263 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-~~~ 263 (963)
.+++.|.+..++++.+++.. +-...+-+.++|++|+|||+||+.+++.....| +.+. ..+. +..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhccc
Confidence 35688999999888877642 113346788999999999999999998764332 2221 1110 000
Q ss_pred CC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-------------HHHHHHHHhccCC-CCCceEE
Q 002125 264 GG-IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP-------------RQIESLIRRLDRL-ASGSRVI 328 (963)
Q Consensus 264 ~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~-~~gs~Ii 328 (963)
.+ .....+. .+.......+.+|++|+++.. .....+...+... ..+..++
T Consensus 253 ~g~~~~~l~~---------------lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 253 YGESEERLRE---------------IFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred ccHHHHHHHH---------------HHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 00 0011111 122223456789999998542 1133344433322 2233444
Q ss_pred E-EeCCchhh-hcC----CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 329 I-TTRDKQVL-KNC----RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 329 v-TTR~~~v~-~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
| ||....-. ... .....+.+...+.++-.+++..+.-+..... ......+++.+.|.-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 4 44433211 111 1245678888899998888875542111111 112456777777754
No 191
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.20 E-value=0.0021 Score=63.76 Aligned_cols=53 Identities=25% Similarity=0.183 Sum_probs=43.2
Q ss_pred cccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 191 TFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 191 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
..|....++||-++-++.+.-.... ++.+-+.|.||+|+||||-+..+++++-
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 3455667899999999998876643 4677889999999999999999998653
No 192
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.20 E-value=0.0044 Score=76.40 Aligned_cols=173 Identities=19% Similarity=0.232 Sum_probs=95.9
Q ss_pred CCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccC
Q 002125 196 NKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETG 264 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 264 (963)
-..+.|.+...++|.+.+.. +-...+-+.++|++|+|||++|+++++.....| +.+. ..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~~------ 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-GP------ 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH------
Confidence 35678888888888776641 122345688999999999999999998764333 1111 00
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHH-HHcCCceEEEEcCCCCH--------------HHHHHHHHhccCC--CCCceE
Q 002125 265 GIKDLQKELLSKLLNDRNVWNIESQLN-RLARKKFLIVFDDVTHP--------------RQIESLIRRLDRL--ASGSRV 327 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~~~~~~~~~~l~~-~L~~k~~LlVLDdv~~~--------------~~~~~l~~~l~~~--~~gs~I 327 (963)
++++...++. ...+..+.+ .-...+.+|++|+++.. ..+..++..+... ..+..|
T Consensus 522 -------~l~~~~vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 522 -------EILSKWVGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred -------HHhhcccCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 0111111100 011112222 22356799999998642 1234444444422 234456
Q ss_pred EEEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 328 IITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 328 ivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
|.||.....+.. -..+..+.++..+.++-.++|..+.-+...... .....+++.+.|.-
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~s 657 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGYT 657 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCCC
Confidence 667755433221 134568899999999999999766532211111 11455666666644
No 193
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.18 E-value=0.00041 Score=67.26 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=55.0
Q ss_pred cEEEcCcccccc-CchHHHHHHHHhhC-CCceEEeC-CCCC--CccchHHHHHHhhhcceeeeeeccCc
Q 002125 28 GVFLSFRGEDTR-DNFTSHLYSALCHN-NIETFIDN-DLKR--GDEISQSLLDTIEASAISIIIFSERY 91 (963)
Q Consensus 28 dvfis~~~~d~~-~~~~~~l~~~L~~~-g~~~~~d~-~~~~--g~~~~~~~~~~i~~s~~~v~v~s~~y 91 (963)
-|||||+..... ..+|..|++.|++. |+.|.+|. +... +..+...+.+.+++++..|||.|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 399999875432 47799999999999 99999998 7743 77899999999999999999999654
No 194
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.17 E-value=0.011 Score=62.60 Aligned_cols=194 Identities=16% Similarity=0.148 Sum_probs=110.9
Q ss_pred CCcccchh---hHHHHHHhHhcC-CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCc------eEEEEecchhhccCCH
Q 002125 197 KDLVGVEW---RIKEIESLLCTG-FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEG------SYFAQNVREAEETGGI 266 (963)
Q Consensus 197 ~~~vGr~~---~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~------~~~~~~~~~~~~~~~~ 266 (963)
+.+||-.. .++++++++... ....+-+.|+|.+|.|||++++.+.+.+...++. ++.+. .....+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 34555433 345667777643 3445679999999999999999999865444432 23332 3456788
Q ss_pred HHHHHHHHHhhhcCCCC-CCHH----HHHHHHcC-CceEEEEcCCCCH-----HHHHHHHHhccCCC---CCceEEEEeC
Q 002125 267 KDLQKELLSKLLNDRNV-WNIE----SQLNRLAR-KKFLIVFDDVTHP-----RQIESLIRRLDRLA---SGSRVIITTR 332 (963)
Q Consensus 267 ~~l~~~ll~~l~~~~~~-~~~~----~l~~~L~~-k~~LlVLDdv~~~-----~~~~~l~~~l~~~~---~gs~IivTTR 332 (963)
..+...++..++..-.. ...+ .....++. +--+||+|.+.+. .+-..++..+...+ .=+-|.|-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 89999999998876544 3333 23344443 4558999999663 12222322222222 2345566666
Q ss_pred CchhhhcC-----CcceEEEeccCCHHHH-HHHHHHhh--cCCCCC-CCcHHHHHHHHHHHhcCCchhHHH
Q 002125 333 DKQVLKNC-----RARQIFRMKELEDADA-HKLFCQCA--FGGDHP-DASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 333 ~~~v~~~~-----~~~~~~~l~~L~~~ea-~~Lf~~~a--~~~~~~-~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
+..-+-.. .-..++.++....++- .+|+.... +.-..+ .-...++++.|.+.++|+.--+..
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 43221111 1123566676665444 44443321 111111 123567889999999998755443
No 195
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.16 E-value=0.13 Score=57.13 Aligned_cols=189 Identities=16% Similarity=0.179 Sum_probs=107.7
Q ss_pred chhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHH-HHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhh---
Q 002125 202 VEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIA-DAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKL--- 277 (963)
Q Consensus 202 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA-~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l--- 277 (963)
|.+.+++|..||.... -.+|.|.|+-|.||+.|+ .++... .+.+..++ +.+.....+-..+.+.++.++
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~----r~~vL~ID-C~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKD----RKNVLVID-CDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhC----CCCEEEEE-ChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999997543 358999999999999998 555442 22233332 222222222222222222222
Q ss_pred --------------------hcCCCC--CCHH------------HHHH-------------------HH---cCCceEEE
Q 002125 278 --------------------LNDRNV--WNIE------------SQLN-------------------RL---ARKKFLIV 301 (963)
Q Consensus 278 --------------------~~~~~~--~~~~------------~l~~-------------------~L---~~k~~LlV 301 (963)
.+.+.. ...+ ++++ +| -.++=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 221111 1111 1111 01 12356899
Q ss_pred EcCCCCH-----------HHHHHHHHhccCCCCCceEEEEeCCchhhhc----C--CcceEEEeccCCHHHHHHHHHHhh
Q 002125 302 FDDVTHP-----------RQIESLIRRLDRLASGSRVIITTRDKQVLKN----C--RARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 302 LDdv~~~-----------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~----~--~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
+|+.... .+|...+.. ..=.+||++|-+...... + ...+.+.+...+.+-|.++...+.
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 9998432 123333322 455789999987644332 2 244678899999999999988876
Q ss_pred cCCCCC-------------C-----CcHHHHHHHHHHHhcCCchhHHHhhhhcCC
Q 002125 365 FGGDHP-------------D-----ASHIELTDKAIKYAQGVPLALKVLGHHLCG 401 (963)
Q Consensus 365 ~~~~~~-------------~-----~~~~~~~~~i~~~~~g~PLal~~l~~~L~~ 401 (963)
-..... . ....+.....++.+||=-.-|+.+++.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 332110 0 123444566777788877777777777754
No 196
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.013 Score=64.62 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=86.5
Q ss_pred Cccc-chhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc-c--------------------CCceEEEE
Q 002125 198 DLVG-VEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR-H--------------------FEGSYFAQ 255 (963)
Q Consensus 198 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~--------------------f~~~~~~~ 255 (963)
.++| -+.-++.+...+..+ .-.+...++|+.|+|||++|+.+++.+-. . ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 555667777777533 34567789999999999999999886521 1 11122221
Q ss_pred ecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEE
Q 002125 256 NVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVI 328 (963)
Q Consensus 256 ~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii 328 (963)
.. ...-.+ +++..+.+.+ .+.+-++|+|+++.. +....|+..+..-+.++.+|
T Consensus 85 ~~---~~~i~i-----------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 PD---GQSIKK-----------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred cc---cccCCH-----------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 00 000001 1111112221 244557899998654 34667777776556778788
Q ss_pred EEeCCch-hhhcC-CcceEEEeccCCHHHHHHHHHH
Q 002125 329 ITTRDKQ-VLKNC-RARQIFRMKELEDADAHKLFCQ 362 (963)
Q Consensus 329 vTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~ 362 (963)
.+|.+.. +.... .....+++.+++.++..+.+..
T Consensus 145 l~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 145 LLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 7776543 33322 3356899999999999888864
No 197
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.11 E-value=0.015 Score=71.65 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=66.3
Q ss_pred CCCcccchhhHHHHHHhHhcC------C-CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHH
Q 002125 196 NKDLVGVEWRIKEIESLLCTG------F-AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 268 (963)
...++|.+..++.+...+... . ....++.++|++|+|||+||+.++..+.. ..+.++ ..+..+......
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d-~se~~~~~~~~~ 528 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFD-MSEYMEKHTVSR 528 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEe-CchhhhcccHHH
Confidence 467899999999988877631 1 12346889999999999999999987632 222332 222212221111
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHcCCc-eEEEEcCCCC--HHHHHHHHHhcc
Q 002125 269 LQKELLSKLLNDRNVWNIESQLNRLARKK-FLIVFDDVTH--PRQIESLIRRLD 319 (963)
Q Consensus 269 l~~~ll~~l~~~~~~~~~~~l~~~L~~k~-~LlVLDdv~~--~~~~~~l~~~l~ 319 (963)
+ ...-.+.........+.+.++.++ -+++||+++. .+....|+..+.
T Consensus 529 l----ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 529 L----IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred H----hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 1 111111001122334555665554 4999999975 344556665543
No 198
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.11 E-value=0.00095 Score=63.51 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=26.8
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
+.+.|+|++|+||||+|+.++..+......++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4789999999999999999998766554334444
No 199
>PRK06921 hypothetical protein; Provisional
Probab=97.11 E-value=0.0011 Score=70.53 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.5
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 255 (963)
...+.++|.+|+|||.||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999987765 45566665
No 200
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.10 E-value=0.0002 Score=85.89 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=82.0
Q ss_pred CCCcEEEecCcccc--ccCcccc-CCCCCcEEEccCCCCCCCCCccccc-ccCCCCCcEEEccCCCCCCcCccccCCCCC
Q 002125 682 KALEMLIVDGTAIR--EVPKSLN-QLALLFRLKLKNCSELDGISSSIFS-LCMFKSLTSLEIIDCQNFMILPDELGNLKA 757 (963)
Q Consensus 682 ~~L~~L~L~~n~l~--~lp~~~~-~l~~L~~L~L~~~~~l~~lp~~~~~-l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 757 (963)
.+|++|+++|...- .-|..++ .||+|+.|.+++-..... .+.. +.++++|..||+|+++.... ..+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence 46889999885432 2233333 578999999887433221 1111 23488899999998876554 56788888
Q ss_pred ccEEEcCCCCCcccC--cccCCCCCCCEEECcCCCCcccC-------ccccCCCCCCEEEecc
Q 002125 758 LETLIIDGTAMREVP--ESLGQLSSVKNLVLTNNNLKRLP-------ESLNQLSSLEYLQLHL 811 (963)
Q Consensus 758 L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp-------~~l~~l~~L~~L~L~~ 811 (963)
|+.|.+.+=.+..-. ..+-+|++|+.||+|......-+ ++-..||.|+.||.++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 998888876665432 34667889999999876443222 2334577888888774
No 201
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.09 E-value=0.0079 Score=60.41 Aligned_cols=117 Identities=17% Similarity=0.226 Sum_probs=72.4
Q ss_pred ccCCCcccchhhHHHHHHhHh--cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHH
Q 002125 194 SYNKDLVGVEWRIKEIESLLC--TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQK 271 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 271 (963)
.....++|.|...+.+.+--. ......--|.+||.-|.|||.|++++.+.+......-+=|. +.++..
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~-------k~dl~~--- 126 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD-------KEDLAT--- 126 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc-------HHHHhh---
Confidence 344678999999888765433 12234556889999999999999999999887776533222 111111
Q ss_pred HHHHhhhcCCCCCCHHHHHHHH--cCCceEEEEcCC---CCHHHHHHHHHhccCC---CCCceEEEEeCCc
Q 002125 272 ELLSKLLNDRNVWNIESQLNRL--ARKKFLIVFDDV---THPRQIESLIRRLDRL---ASGSRVIITTRDK 334 (963)
Q Consensus 272 ~ll~~l~~~~~~~~~~~l~~~L--~~k~~LlVLDdv---~~~~~~~~l~~~l~~~---~~gs~IivTTR~~ 334 (963)
+..+.+.| +..|+.|..||. .+....+.+...+... .|...++..|.++
T Consensus 127 --------------Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 127 --------------LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred --------------HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11222333 357999999998 3344566666665422 2334455555544
No 202
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.024 Score=61.68 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=95.3
Q ss_pred HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh-cc-------------------CCceEEEEecchhhccCC
Q 002125 206 IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS-RH-------------------FEGSYFAQNVREAEETGG 265 (963)
Q Consensus 206 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~-------------------f~~~~~~~~~~~~~~~~~ 265 (963)
.+++.+.+..+ .-.+.+.++|+.|+||+++|..++..+- .+ .+...++....+ ...-.
T Consensus 12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~I~ 89 (319)
T PRK06090 12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GKSIT 89 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CCcCC
Confidence 34555555432 3356888999999999999999987541 11 112222211000 00000
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc-hhh
Q 002125 266 IKDLQKELLSKLLNDRNVWNIESQLNRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK-QVL 337 (963)
Q Consensus 266 ~~~l~~~ll~~l~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~ 337 (963)
+ +.+..+.+.+ .++.-++|+|+++.. ....+++..+..-.+++.+|.+|.+. .++
T Consensus 90 v-----------------dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 90 V-----------------EQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred H-----------------HHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 1 1111222222 234558889999765 34667776666556777777766654 444
Q ss_pred hcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 338 KNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 338 ~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
... .....+.+.+++.+++.+.+.... .. ....++..++|.|+....+
T Consensus 153 pTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 153 PTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 433 345689999999999999886532 11 1356788999999866544
No 203
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.011 Score=65.18 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=101.2
Q ss_pred ccCCCcccchhhHHHHHHhHhc--CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCc--eEEEEecchhhccCCHHHH
Q 002125 194 SYNKDLVGVEWRIKEIESLLCT--GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEG--SYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l 269 (963)
..+..++||+.|++.+.+++.. +....+.+-|.|-+|.|||.+...++.+....... ++++.+.. -....++
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s----l~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS----LTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc----ccchHHH
Confidence 3467899999999999999873 34456788999999999999999999876554433 35554221 1233455
Q ss_pred HHHHHHhhhcCCCC-----CCHHHHHHHHcC--CceEEEEcCCCCHHH--HHHHHHhccC-CCCCceEEEEeCCc-----
Q 002125 270 QKELLSKLLNDRNV-----WNIESQLNRLAR--KKFLIVFDDVTHPRQ--IESLIRRLDR-LASGSRVIITTRDK----- 334 (963)
Q Consensus 270 ~~~ll~~l~~~~~~-----~~~~~l~~~L~~--k~~LlVLDdv~~~~~--~~~l~~~l~~-~~~gs~IivTTR~~----- 334 (963)
...+.+.+...... +..+.+.....+ +.+|+|+|.++.... -+.+...+.| .-+++|+|+.---.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 55555555222211 223344444444 368999999876532 1111111111 12556665433211
Q ss_pred -hhhhcCC-----cceEEEeccCCHHHHHHHHHHhh
Q 002125 335 -QVLKNCR-----ARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 335 -~v~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
..+.... ....+..++.+.++-.+++..+.
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 1111111 23578889999999999998876
No 204
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.012 Score=64.67 Aligned_cols=161 Identities=12% Similarity=0.159 Sum_probs=95.8
Q ss_pred HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc---------------------CCceEEEEecchhhccC
Q 002125 206 IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH---------------------FEGSYFAQNVREAEETG 264 (963)
Q Consensus 206 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~~~~~~~~~~~ 264 (963)
-+++.+.+..+ .-.+.+.++|+.|+||+++|.+++..+--. .+...++..... ...-
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~I 88 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSSL 88 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cccC
Confidence 34555555432 335678899999999999999998865211 111222210000 0000
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc-hh
Q 002125 265 GIKDLQKELLSKLLNDRNVWNIESQLNRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK-QV 336 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v 336 (963)
.+ +.+..+.+.+ .+++-++|+|+++.. +....|+..+..-.+++.+|.+|.+. .+
T Consensus 89 ~i-----------------dqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (334)
T PRK07993 89 GV-----------------DAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARL 151 (334)
T ss_pred CH-----------------HHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 00 1122222222 256668999998764 44667776666556777777777664 44
Q ss_pred hhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 337 LKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 337 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
+... ...+.+.+.+++.+++.+.+.... . . ..+.+..++..++|.|...
T Consensus 152 LpTIrSRCq~~~~~~~~~~~~~~~L~~~~---~--~--~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 152 LATLRSRCRLHYLAPPPEQYALTWLSREV---T--M--SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred hHHHHhccccccCCCCCHHHHHHHHHHcc---C--C--CHHHHHHHHHHcCCCHHHH
Confidence 4332 334678999999999998876532 1 1 1233678899999999643
No 205
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.018 Score=62.68 Aligned_cols=169 Identities=12% Similarity=0.141 Sum_probs=94.9
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc--C---CceEEEEecch--hhccCCHHHHHHHHHHhhhc
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH--F---EGSYFAQNVRE--AEETGGIKDLQKELLSKLLN 279 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f---~~~~~~~~~~~--~~~~~~~~~l~~~ll~~l~~ 279 (963)
+.+.+.+..+ .-.+...++|+.|+||+++|+.++..+--. . .+..- ...+. ....+++..+.. .
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C-~sC~~~~~g~HPD~~~i~p-------~ 82 (325)
T PRK06871 12 QQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQC-HSCHLFQAGNHPDFHILEP-------I 82 (325)
T ss_pred HHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHhcCCCCCEEEEcc-------c
Confidence 4455555432 234677899999999999999999864211 1 00000 00000 000011100000 0
Q ss_pred CCCCCCHHHHH---HHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc-hhhhcC-CcceEEE
Q 002125 280 DRNVWNIESQL---NRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK-QVLKNC-RARQIFR 347 (963)
Q Consensus 280 ~~~~~~~~~l~---~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~ 347 (963)
....-.++.++ +.+ .+++-++|+|+++.. ....+|+..+..-.+++.+|++|.+. .++... .....+.
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 00001222222 222 245668889999765 34667777666556777887777765 444332 3356899
Q ss_pred eccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 348 MKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 348 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
+.+++.+++.+.+.... . .+ ...+...+..++|.|+.
T Consensus 163 ~~~~~~~~~~~~L~~~~--~---~~--~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 163 IHPPEEQQALDWLQAQS--S---AE--ISEILTALRINYGRPLL 199 (325)
T ss_pred CCCCCHHHHHHHHHHHh--c---cC--hHHHHHHHHHcCCCHHH
Confidence 99999999999887654 1 11 12356678889999963
No 206
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0052 Score=73.14 Aligned_cols=115 Identities=18% Similarity=0.259 Sum_probs=77.0
Q ss_pred CCcccchhhHHHHHHhHhc-------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCT-------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
..++|-+..++.+.+.+.. ......+....|+.|||||.||++++..+-+.=+.-+-+ ++.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~----------DMSEy 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI----------DMSEY 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee----------chHHH
Confidence 6789999999999888762 223456777899999999999999998663322222222 23333
Q ss_pred H-HHHHHhhhcCCCC----CCHHHHHHHHcCCce-EEEEcCCC--CHHHHHHHHHhccCC
Q 002125 270 Q-KELLSKLLNDRNV----WNIESQLNRLARKKF-LIVFDDVT--HPRQIESLIRRLDRL 321 (963)
Q Consensus 270 ~-~~ll~~l~~~~~~----~~~~~l~~~L~~k~~-LlVLDdv~--~~~~~~~l~~~l~~~ 321 (963)
+ +...+.+.+.... +.-..+-+..++++| +|.||.|+ +++...-|++.++..
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 2 2334444444333 344578888899988 78889996 456677777776543
No 207
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.024 Score=67.14 Aligned_cols=177 Identities=15% Similarity=0.156 Sum_probs=104.8
Q ss_pred cCCCcccchhhHHHHHHhHh----------cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccC
Q 002125 195 YNKDLVGVEWRIKEIESLLC----------TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETG 264 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 264 (963)
...++.|.++..++|.+... .+..-++=+.++|++|.|||-||++++-.-. +-|+...+ .
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSG----S- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSG----S- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceeeech----H-
Confidence 45778998887777766554 1223367789999999999999999986422 22333111 0
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHH-HHHHcCCceEEEEcCCCCH-----------------HHHHHHHHhccCCCCCce
Q 002125 265 GIKDLQKELLSKLLNDRNVWNIESQ-LNRLARKKFLIVFDDVTHP-----------------RQIESLIRRLDRLASGSR 326 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~~~~~~~~~~l-~~~L~~k~~LlVLDdv~~~-----------------~~~~~l~~~l~~~~~gs~ 326 (963)
++.+...+.. ...+..+ ...=.+.++.|.+|+++.. ..+.+++...+.+..+..
T Consensus 379 -------EFvE~~~g~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 -------EFVEMFVGVG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred -------HHHHHhcccc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 1111111111 1111111 1122356788888877431 126677777776655543
Q ss_pred E--EEEeCCchhhh-----cCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 327 V--IITTRDKQVLK-----NCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 327 I--ivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
| +-+|....++. .-..++.+.++.-+..+..++|.-++-..... .+..++++ ++...-|.+=|
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 3 34554444432 22345678899999999999999888433332 34455666 88888888854
No 208
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0039 Score=70.41 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=84.3
Q ss_pred CCCcccchhhHHHHHHhHhc----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCC
Q 002125 196 NKDLVGVEWRIKEIESLLCT----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGG 265 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 265 (963)
.+++=|.++.+.++.+++.. +-...+-|.+||++|+|||.||++++..+.-.| +. ++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----isA--- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----ISA--- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ecc---
Confidence 46788999999999887762 224567799999999999999999998764443 22 010
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH-------------HHHHHHHhccCC------CCCce
Q 002125 266 IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR-------------QIESLIRRLDRL------ASGSR 326 (963)
Q Consensus 266 ~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~l~~~------~~gs~ 326 (963)
-++.+.+.++....-.+...+.-..-++++++|+++-.. .+.+|+..++.. +.+--
T Consensus 257 -----peivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~Vl 331 (802)
T KOG0733|consen 257 -----PEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVL 331 (802)
T ss_pred -----hhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeE
Confidence 012222222211111112222334679999999996421 133344333221 22322
Q ss_pred EEE-EeCCchhhhc---CC-cceEEEeccCCHHHHHHHHHHhh
Q 002125 327 VII-TTRDKQVLKN---CR-ARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 327 Iiv-TTR~~~v~~~---~~-~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
||- |+|...+-.. .+ .++.+.+.--++.+-.+++...+
T Consensus 332 VIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 332 VIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred EEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 332 4554433221 12 34566676666666666665554
No 209
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.98 E-value=0.0046 Score=62.32 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=60.1
Q ss_pred chhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH-H-hccCCceEEEEecchhhccCC--HHHHH-------
Q 002125 202 VEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK-I-SRHFEGSYFAQNVREAEETGG--IKDLQ------- 270 (963)
Q Consensus 202 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~~~~~~--~~~l~------- 270 (963)
+..+-+...+.|. ...++.+.|++|.|||.||.+.+-+ + ..+|+..++....-+..+.-+ ...+.
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 4444555555554 3458999999999999999988753 2 467888887765433222111 01111
Q ss_pred HHHHHhhhcCCCCCCHHHHHH----------HHcCC---ceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCch
Q 002125 271 KELLSKLLNDRNVWNIESQLN----------RLARK---KFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQ 335 (963)
Q Consensus 271 ~~ll~~l~~~~~~~~~~~l~~----------~L~~k---~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~ 335 (963)
.-+...+..--.....+.+.+ .++++ ..+||+|++.+. +++..++. +.+.||+||++--..+
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE----
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEecCcee
Confidence 111111111111123333222 23443 579999999654 45666654 4579999999987653
Q ss_pred h
Q 002125 336 V 336 (963)
Q Consensus 336 v 336 (963)
.
T Consensus 158 ~ 158 (205)
T PF02562_consen 158 I 158 (205)
T ss_dssp -
T ss_pred e
Confidence 3
No 210
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.98 E-value=0.01 Score=62.65 Aligned_cols=169 Identities=20% Similarity=0.205 Sum_probs=98.6
Q ss_pred cCCCcccchhhHHHHHHhHhcC--CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhh--ccCCHHHHH
Q 002125 195 YNKDLVGVEWRIKEIESLLCTG--FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE--ETGGIKDLQ 270 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~--~~~~~~~l~ 270 (963)
+-..++|-.++.+++.+++... -++..-|.|+|+.|.|||+|......+ .+.+.-...+....+.. ++-.+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4467899999999999988721 123345788999999999998777665 34444444433332221 222345555
Q ss_pred HHHHHhhhcCCCC-----CCHHHHHHHHcC------CceEEEEcCCCCHH----H--HHHHHHh-ccCCCCCceEEEEeC
Q 002125 271 KELLSKLLNDRNV-----WNIESQLNRLAR------KKFLIVFDDVTHPR----Q--IESLIRR-LDRLASGSRVIITTR 332 (963)
Q Consensus 271 ~~ll~~l~~~~~~-----~~~~~l~~~L~~------k~~LlVLDdv~~~~----~--~~~l~~~-l~~~~~gs~IivTTR 332 (963)
+++..++...... ++++.+...|+. -+++.|+|.++-.. | +-.+... .....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 5555544333221 455666666643 36889998875432 2 2222221 122356677889999
Q ss_pred Cc-------hhhhcCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 333 DK-------QVLKNCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 333 ~~-------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
-. .|-....-..++-++.++.++-.++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 54 222222223356666677777777765544
No 211
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.97 E-value=0.021 Score=64.25 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=27.4
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
.+.+|.++|.+|+||||+|..++..++.+-..+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 368999999999999999999987665543333333
No 212
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.95 E-value=9.3e-05 Score=74.83 Aligned_cols=138 Identities=15% Similarity=0.084 Sum_probs=85.9
Q ss_pred ccCCCCCCeeecccccccccCCcc----cCCCCCCcEEEecCccccccCc--------------cccCCCCCcEEEccCC
Q 002125 654 LCMFKSLTSLEIIDCQNFMMLPYE----LGNLKALEMLIVDGTAIREVPK--------------SLNQLALLFRLKLKNC 715 (963)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~~~p~~----~~~l~~L~~L~L~~n~l~~lp~--------------~~~~l~~L~~L~L~~~ 715 (963)
+-+++.|+..+||+|.+...+|+. +++-+.|++|.|++|.+..+.. -..+-+.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 445788888888888877666653 4566788888888887763321 1234566777777766
Q ss_pred CCCCCCCcccc--cccCCCCCcEEEccCCCCCCc-----CccccCCCCCccEEEcCCCCCcc-----cCcccCCCCCCCE
Q 002125 716 SELDGISSSIF--SLCMFKSLTSLEIIDCQNFMI-----LPDELGNLKALETLIIDGTAMRE-----VPESLGQLSSVKN 783 (963)
Q Consensus 716 ~~l~~lp~~~~--~l~~l~~L~~L~l~~~~~~~~-----~p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~ 783 (963)
. +...|.... .+..-.+|+.+.+..|.+.-. +-..+..+.+|+.|+|++|-++. +...+...+.|+.
T Consensus 168 R-lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 168 R-LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred h-hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 3 333332211 111124677787777754321 11134567888888888888762 2334555566888
Q ss_pred EECcCCCCc
Q 002125 784 LVLTNNNLK 792 (963)
Q Consensus 784 L~Ls~n~l~ 792 (963)
|.+..|-++
T Consensus 247 L~lnDClls 255 (388)
T COG5238 247 LRLNDCLLS 255 (388)
T ss_pred ccccchhhc
Confidence 888888776
No 213
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.95 E-value=0.017 Score=62.67 Aligned_cols=153 Identities=22% Similarity=0.238 Sum_probs=81.3
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhh-cc-CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcC
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE-ET-GGIKDLQKELLSKLLNDRNVWNIESQLNRLAR 295 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~-~~-~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~ 295 (963)
..++.++|||++|+|||.+|++++..+...| ......+.. .. ....+..++++...... .+-++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~----------a~~~~ 211 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAADI----------IKKKG 211 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHHHH----------hhccC
Confidence 4568999999999999999999999865543 222222211 11 12233333333322110 00146
Q ss_pred CceEEEEcCCCCH------------HHH--HHHHHhcc--------------CCCCCceEEEEeCCchhhhcC-----Cc
Q 002125 296 KKFLIVFDDVTHP------------RQI--ESLIRRLD--------------RLASGSRVIITTRDKQVLKNC-----RA 342 (963)
Q Consensus 296 k~~LlVLDdv~~~------------~~~--~~l~~~l~--------------~~~~gs~IivTTR~~~v~~~~-----~~ 342 (963)
++++|++|+++.. .+. ..|+...+ ....+-.||+||.....+... ..
T Consensus 212 aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRf 291 (413)
T PLN00020 212 KMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRM 291 (413)
T ss_pred CCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCC
Confidence 8999999998531 111 33443221 123456778888766543221 12
Q ss_pred ceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch
Q 002125 343 RQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 343 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
+..| ..-+.++-.++++.+. +..... .....++++...|-|+
T Consensus 292 Dk~i--~lPd~e~R~eIL~~~~-r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 292 EKFY--WAPTREDRIGVVHGIF-RDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred Ccee--CCCCHHHHHHHHHHHh-ccCCCC---HHHHHHHHHcCCCCCc
Confidence 2333 3456677777776554 222221 2334556666666554
No 214
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.02 Score=65.58 Aligned_cols=191 Identities=19% Similarity=0.190 Sum_probs=109.0
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh-c---cCCceEEEEecchhhccCCHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS-R---HFEGSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~---~f~~~~~~~~~~~~~~~~~~~~ 268 (963)
|...+++||-+.-.+.|...+..+ .-.......|+-|+||||+|+-++..+- . ..+.+-=.....++.....+.-
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~-ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv 90 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG-RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV 90 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC-cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccc
Confidence 444567899999999999988743 2245567899999999999999987541 1 1111000000001110000000
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHH-----cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc-hhhh-c
Q 002125 269 LQKELLSKLLNDRNVWNIESQLNRL-----ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK-QVLK-N 339 (963)
Q Consensus 269 l~~~ll~~l~~~~~~~~~~~l~~~L-----~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~-~ 339 (963)
+.-+.++. ...+++..+.+.. .++.=+.|+|.|... ..+.+|+..+..-...-..|..|.+. .+.. .
T Consensus 91 iEiDaASn----~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 91 IEIDAASN----TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred hhhhhhhc----cChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 00011100 0113334444443 345558899999755 45888887765445555555555544 3322 2
Q ss_pred CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch
Q 002125 340 CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 340 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
....+.|.++.++.++-...+...+-. ..-...++...-|++..+|...
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~--E~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDK--EGINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHh--cCCccCHHHHHHHHHHcCCChh
Confidence 244578999999999998888777632 2223344556667777766543
No 215
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.92 E-value=0.016 Score=56.88 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=75.8
Q ss_pred cchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc--------------------cCCceEEEEecchh
Q 002125 201 GVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR--------------------HFEGSYFAQNVREA 260 (963)
Q Consensus 201 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------------------~f~~~~~~~~~~~~ 260 (963)
|-++..+.|...+..+ .-...+.++|..|+||+++|..+++.+-. .++...|+.....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 4456667777777543 33456889999999999999999985421 2333444431100
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCchh-h
Q 002125 261 EETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQV-L 337 (963)
Q Consensus 261 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v-~ 337 (963)
...-.+..+. ++...+.... ..++.=++|+||++.. +...+|+..+.....++++|++|++..- .
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~~-----------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLSP-----------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKIL 146 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-
T ss_pred cchhhHHHHH-HHHHHHHHHH-----------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHCh
Confidence 0011222221 3333222211 1245678999999764 4567777777666789999999987643 2
Q ss_pred hcC-CcceEEEeccCC
Q 002125 338 KNC-RARQIFRMKELE 352 (963)
Q Consensus 338 ~~~-~~~~~~~l~~L~ 352 (963)
... .....+.+.+++
T Consensus 147 ~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 147 PTIRSRCQVIRFRPLS 162 (162)
T ss_dssp HHHHTTSEEEEE----
T ss_pred HHHHhhceEEecCCCC
Confidence 222 334566666653
No 216
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.92 E-value=0.0019 Score=63.12 Aligned_cols=59 Identities=22% Similarity=0.162 Sum_probs=35.7
Q ss_pred CCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCc--cccCCCCCcEEEccCC
Q 002125 657 FKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPK--SLNQLALLFRLKLKNC 715 (963)
Q Consensus 657 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~~ 715 (963)
++.|.+|.|.+|.+...-|.--.-+++|..|.|.+|+|.++-+ .+..+++|++|.+-+|
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 6667777777776666555444455667777777776665422 2445556666665555
No 217
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.012 Score=67.61 Aligned_cols=166 Identities=19% Similarity=0.263 Sum_probs=95.0
Q ss_pred CCcccchhhHHHHHHhHh-----------cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCce-------EEEEecc
Q 002125 197 KDLVGVEWRIKEIESLLC-----------TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGS-------YFAQNVR 258 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-------~~~~~~~ 258 (963)
+++=|.++..++|.+... .+-...+-|.++|++|+|||++|+++++.-.-.|-.+ -|+-
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG--- 510 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG--- 510 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcC---
Confidence 344457766667765543 2335678899999999999999999999766555322 1110
Q ss_pred hhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH-------------HHHHHHHhccCCCCCc
Q 002125 259 EAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR-------------QIESLIRRLDRLASGS 325 (963)
Q Consensus 259 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~l~~~~~gs 325 (963)
.-.+..++++.+. -.-.+.+|.||.++... .+..++..++......
T Consensus 511 ------eSEr~ir~iF~kA---------------R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 511 ------ESERAIREVFRKA---------------RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred ------chHHHHHHHHHHH---------------hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 1112222222221 12346888888875432 2556666665444444
Q ss_pred eEEE---EeCCchh----hhcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 326 RVII---TTRDKQV----LKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 326 ~Iiv---TTR~~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
.|+| |-|...+ +..-..++.+.++.-+.+.-.++|+.++-+-.-.+. -...++++++.|.-
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 4443 3343333 211235678889888888889999988833222221 11345555555543
No 218
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.90 E-value=0.0018 Score=72.58 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=61.8
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc--cCCceEEEEecchhhccCCHHHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR--HFEGSYFAQNVREAEETGGIKDLQKELL 274 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~~~ll 274 (963)
.++++.+..++.+...|..+ +.+.++|++|+|||++|+.+++.+.. .+..+.|+. ++.......+...
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G-- 244 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQG-- 244 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhcc--
Confidence 46788889999998888643 46888999999999999999987643 345555554 2333333332221
Q ss_pred HhhhcCCCC----CC--HHHHHHHHc--CCceEEEEcCCCCHH
Q 002125 275 SKLLNDRNV----WN--IESQLNRLA--RKKFLIVFDDVTHPR 309 (963)
Q Consensus 275 ~~l~~~~~~----~~--~~~l~~~L~--~k~~LlVLDdv~~~~ 309 (963)
....... .. .+.+..... ++++++|+|+++...
T Consensus 245 --~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 245 --YRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred --cCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1111100 11 122222222 468999999997544
No 219
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.90 E-value=0.0055 Score=76.20 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=66.1
Q ss_pred CCCcccchhhHHHHHHhHhcC------CC-CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHH
Q 002125 196 NKDLVGVEWRIKEIESLLCTG------FA-GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 268 (963)
...++|.+..++.+...+... .+ ...++.++|+.|+|||++|+.+++.+...-...+.+. ..+....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~~----- 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFMEK----- 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhhh-----
Confidence 457899999999988877621 11 2347889999999999999999986543333333332 2221111
Q ss_pred HHHHHHHhhhcCCCC----CCHHHHHHHHcCC-ceEEEEcCCC--CHHHHHHHHHhc
Q 002125 269 LQKELLSKLLNDRNV----WNIESQLNRLARK-KFLIVFDDVT--HPRQIESLIRRL 318 (963)
Q Consensus 269 l~~~ll~~l~~~~~~----~~~~~l~~~L~~k-~~LlVLDdv~--~~~~~~~l~~~l 318 (963)
.....+.+.... .....+.+.++.+ .-+|+||+++ +.+.+..+...+
T Consensus 641 ---~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 641 ---HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred ---hhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 112222221111 1122344444433 3699999997 455566666554
No 220
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.89 E-value=0.022 Score=60.74 Aligned_cols=35 Identities=34% Similarity=0.393 Sum_probs=25.5
Q ss_pred HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 206 IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 206 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
++++..++..+ +.|.|.|.+|+|||++|+.++...
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444455432 346789999999999999998755
No 221
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0038 Score=72.26 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=89.2
Q ss_pred CCcccchhhHHHHHHhHhc----CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCT----GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKE 272 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 272 (963)
.+-+|.++-.++|.++|.- ..-.-++++++|++|+|||+|++.++..+...|-... +-.++..++-.+-+ +.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDEAEIRGHR---RT 398 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDEAEIRGHR---RT 398 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccHHHhcccc---cc
Confidence 4668999999999999872 2334579999999999999999999998877763221 11222211111110 11
Q ss_pred HHHhhhcCCCCCCHHHHHH---HHcCCceEEEEcCCCCHHH------HHHHHHhccC-----CC--------CCceE-EE
Q 002125 273 LLSKLLNDRNVWNIESQLN---RLARKKFLIVFDDVTHPRQ------IESLIRRLDR-----LA--------SGSRV-II 329 (963)
Q Consensus 273 ll~~l~~~~~~~~~~~l~~---~L~~k~~LlVLDdv~~~~~------~~~l~~~l~~-----~~--------~gs~I-iv 329 (963)
....+. ..+.+ ...-+.=+++||.++.... ..+|+..++. |. -=|.| -|
T Consensus 399 YIGamP--------GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 399 YIGAMP--------GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred ccccCC--------hHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 111100 11111 2234566888999865321 2333333321 00 01444 34
Q ss_pred EeCCc-h-h-hhcCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 330 TTRDK-Q-V-LKNCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 330 TTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
||-|. + + ..-....+++++.+.+++|-.++-+++.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 55443 1 1 1122345689999999999999887765
No 222
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.87 E-value=0.0061 Score=66.20 Aligned_cols=100 Identities=15% Similarity=0.242 Sum_probs=58.1
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCce
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKF 298 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~ 298 (963)
..+-+.|+|..|+|||.||.++++.+..+-..+.|+.. ..+..++...... .......+.+. +.=
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~----------~~l~~~lk~~~~~----~~~~~~l~~l~-~~d 219 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF----------PEFIRELKNSISD----GSVKEKIDAVK-EAP 219 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH----------HHHHHHHHHHHhc----CcHHHHHHHhc-CCC
Confidence 34678999999999999999999988765455566641 2333333333221 12333344444 455
Q ss_pred EEEEcCCCC--HHHHH--HHHHhc-c-CCCCCceEEEEeCC
Q 002125 299 LIVFDDVTH--PRQIE--SLIRRL-D-RLASGSRVIITTRD 333 (963)
Q Consensus 299 LlVLDdv~~--~~~~~--~l~~~l-~-~~~~gs~IivTTR~ 333 (963)
||||||+.. ...|. .++..+ . ....+-.+|+||--
T Consensus 220 lLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 220 VLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred EEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 889999943 22332 233322 1 11245567888863
No 223
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.86 E-value=0.012 Score=72.68 Aligned_cols=52 Identities=27% Similarity=0.397 Sum_probs=40.4
Q ss_pred CCcccchhhHHHHHHhHhc----CCCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 197 KDLVGVEWRIKEIESLLCT----GFAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
...+|.++-.+++.+++.. +....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4578999988888886651 222345799999999999999999999875444
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.85 E-value=0.0055 Score=67.05 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=55.1
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLI 300 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~Ll 300 (963)
..+.++|.+|+|||.||.++++.+..+-..++|+.. ..+...+...-.. .........+.+.+ -=||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~----------~~l~~~l~~~~~~--~~~~~~~~~~~l~~-~DLL 250 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA----------DELIEILREIRFN--NDKELEEVYDLLIN-CDLL 250 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH----------HHHHHHHHHHHhc--cchhHHHHHHHhcc-CCEE
Confidence 568999999999999999999987666555666641 1222222221111 01111111233333 3489
Q ss_pred EEcCCCC----HHHHHHHHHhccC-CCCCceEEEEeCC
Q 002125 301 VFDDVTH----PRQIESLIRRLDR-LASGSRVIITTRD 333 (963)
Q Consensus 301 VLDdv~~----~~~~~~l~~~l~~-~~~gs~IivTTR~ 333 (963)
||||+.. ....+.+...+.. ...+-.+||||..
T Consensus 251 IIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 251 IIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 9999933 2222333333221 1235568888874
No 225
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.85 E-value=0.00015 Score=77.92 Aligned_cols=108 Identities=21% Similarity=0.187 Sum_probs=56.1
Q ss_pred CCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCc--cccCCCCCccEEEcCCCCCc---ccCcccCC
Q 002125 703 QLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILP--DELGNLKALETLIIDGTAMR---EVPESLGQ 777 (963)
Q Consensus 703 ~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~L~~n~l~---~lp~~l~~ 777 (963)
.+..|+.|..++|...+..+-+-- -.+..+|+.|.+.+|+..+..- ..=.+.+.|+.|++.++... ++-.--.+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aL-g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWAL-GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHH-hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 355667777776655433221110 0124667777777776533221 11134566777777666443 22222345
Q ss_pred CCCCCEEECcCCCC-cc-----cCccccCCCCCCEEEecc
Q 002125 778 LSSVKNLVLTNNNL-KR-----LPESLNQLSSLEYLQLHL 811 (963)
Q Consensus 778 l~~L~~L~Ls~n~l-~~-----lp~~l~~l~~L~~L~L~~ 811 (963)
++.|+.|.|++|.+ +. +...-..+..|+.|.|+.
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n 410 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN 410 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC
Confidence 66777777777633 21 122334556667777665
No 226
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.85 E-value=0.03 Score=64.79 Aligned_cols=167 Identities=14% Similarity=0.161 Sum_probs=104.6
Q ss_pred cCCCcccchhhHHHHHHhHhc---CCCCeEEEEEEccCCCChhhHHHHHHHHHh-----ccCCceEEEEecchhhccCCH
Q 002125 195 YNKDLVGVEWRIKEIESLLCT---GFAGVYILGIWGIGGIGKTTIADAVFNKIS-----RHFEGSYFAQNVREAEETGGI 266 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-----~~f~~~~~~~~~~~~~~~~~~ 266 (963)
++..+-+|+.+..+|...+.. ....-..+-|.|.+|.|||+.+..|.+.+. ..-+...|+..- .-.-...
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN--gm~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN--GLRLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc--ceeecCH
Confidence 667888999999999998872 223345889999999999999999998553 122222333210 1222456
Q ss_pred HHHHHHHHHhhhcCCCC--CCHHHHHHHHc-----CCceEEEEcCCCCHHH--HHHHHHhccCC-CCCceEEEEeCCc--
Q 002125 267 KDLQKELLSKLLNDRNV--WNIESQLNRLA-----RKKFLIVFDDVTHPRQ--IESLIRRLDRL-ASGSRVIITTRDK-- 334 (963)
Q Consensus 267 ~~l~~~ll~~l~~~~~~--~~~~~l~~~L~-----~k~~LlVLDdv~~~~~--~~~l~~~l~~~-~~gs~IivTTR~~-- 334 (963)
.++...|...+.+.... ..++.+..+.. .+..++++|+++..-. -+-+-..+.|- .++|+++|-+=..
T Consensus 472 ~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 472 REIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 78888888888877665 34556666664 4678999998865422 12233333443 4678876655321
Q ss_pred ---------hhhhcCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 335 ---------QVLKNCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 335 ---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
.+...++ ...+...+.+.++-.+....+.
T Consensus 552 dlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 552 DLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred cCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhh
Confidence 1111111 2356677777777777765554
No 227
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.82 E-value=0.057 Score=61.44 Aligned_cols=87 Identities=30% Similarity=0.274 Sum_probs=50.3
Q ss_pred hhhhHHHHHHHhccccCCCCCCCchhhHHHHHHHHHHHhhhcccccccCCCcccchhhHH----HHHHhHhcCC------
Q 002125 148 KMHRWANALTEAANLSGFDSDVIRPESKLVEEIANEILERLEETFQSYNKDLVGVEWRIK----EIESLLCTGF------ 217 (963)
Q Consensus 148 ~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~----~l~~~L~~~~------ 217 (963)
.+++++.||-++ .-..+.++++++.+.++..... ....+-.++..++ ++.+.+....
T Consensus 26 ~l~ei~~aLl~a-----------dV~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~ 92 (437)
T PRK00771 26 VVKDIQRALLQA-----------DVNVKLVKELSKSIKERALEEE--PPKGLTPREHVIKIVYEELVKLLGEETEPLVLP 92 (437)
T ss_pred HHHHHHHHHHHC-----------CCCHHHHHHHHHHHHHHHhccc--ccccCCcHHHHHHHHHHHHHHHhCCCccccccC
Confidence 455666666432 2234556666666655533211 1122223333333 3444443211
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
..+.+|.++|.+|+||||+|..++..+..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 346899999999999999999999877654
No 228
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.78 E-value=0.0055 Score=75.95 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=65.7
Q ss_pred CCCcccchhhHHHHHHhHhc-------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHH
Q 002125 196 NKDLVGVEWRIKEIESLLCT-------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 268 (963)
...++|.+..++.+.+.+.. ......++.++|++|+|||.||+.++..+-......+-+ +..+.......
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~-dmse~~~~~~~-- 641 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITI-NMSEFQEAHTV-- 641 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEE-eHHHhhhhhhh--
Confidence 36789999999999887752 122345788999999999999999988764332222212 22222111111
Q ss_pred HHHHHHHhhhcCCCC----CCHHHHHHHHcC-CceEEEEcCCCC--HHHHHHHHHhcc
Q 002125 269 LQKELLSKLLNDRNV----WNIESQLNRLAR-KKFLIVFDDVTH--PRQIESLIRRLD 319 (963)
Q Consensus 269 l~~~ll~~l~~~~~~----~~~~~l~~~L~~-k~~LlVLDdv~~--~~~~~~l~~~l~ 319 (963)
..+.+.... .....+.+.++. ..-+|+||+++. .+.++.|...+.
T Consensus 642 ------~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld 693 (852)
T TIGR03345 642 ------SRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFD 693 (852)
T ss_pred ------ccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhh
Confidence 112111111 111234455544 456999999964 334555655543
No 229
>PRK08118 topology modulation protein; Reviewed
Probab=96.75 E-value=0.0018 Score=63.81 Aligned_cols=33 Identities=27% Similarity=0.519 Sum_probs=26.2
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhc---cCCceEEE
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISR---HFEGSYFA 254 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~---~f~~~~~~ 254 (963)
.|.|+|++|+||||||+.+++.+.- +|+...|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 5889999999999999999987543 35655553
No 230
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.73 E-value=0.019 Score=71.74 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=66.6
Q ss_pred CCCcccchhhHHHHHHhHhcC------CC-CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHH
Q 002125 196 NKDLVGVEWRIKEIESLLCTG------FA-GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 268 (963)
...++|.+..++.+...+... .. ...++.+.|++|+|||++|+.++..+...-...+.+. ..+......
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~~~--- 639 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEKHS--- 639 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhcccch---
Confidence 356899999999998888631 11 2457889999999999999999987644333333332 222111111
Q ss_pred HHHHHHHhhhcCCCC----CCHHHHHHHHcCCc-eEEEEcCCCC--HHHHHHHHHhc
Q 002125 269 LQKELLSKLLNDRNV----WNIESQLNRLARKK-FLIVFDDVTH--PRQIESLIRRL 318 (963)
Q Consensus 269 l~~~ll~~l~~~~~~----~~~~~l~~~L~~k~-~LlVLDdv~~--~~~~~~l~~~l 318 (963)
...+.+.... .....+.+.++.++ .+|+||+++. .+.+..|+..+
T Consensus 640 -----~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 640 -----VARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred -----HHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 1111111111 12224444454444 4899999965 34466666555
No 231
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.016 Score=64.28 Aligned_cols=145 Identities=19% Similarity=0.177 Sum_probs=85.0
Q ss_pred CcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC---------------------CceEEEEe
Q 002125 198 DLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF---------------------EGSYFAQN 256 (963)
Q Consensus 198 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~~~~~~ 256 (963)
.++|-+....++..+..........+.++|++|+||||+|.++++.+.... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 456777778888877764433445699999999999999999998764322 1222221
Q ss_pred cchhhccCC---HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHHH--HHHHHHhccCCCCCceEEEEe
Q 002125 257 VREAEETGG---IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPRQ--IESLIRRLDRLASGSRVIITT 331 (963)
Q Consensus 257 ~~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~--~~~l~~~l~~~~~gs~IivTT 331 (963)
.+.... ..+..+++......... .++.-++++|+++.... ..++...+......+++|++|
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~~-----------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESPL-----------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCCC-----------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 111111 23333333333222111 25677999999987543 556666655556788888888
Q ss_pred CCc-hhhhcC-CcceEEEeccCCHHHHH
Q 002125 332 RDK-QVLKNC-RARQIFRMKELEDADAH 357 (963)
Q Consensus 332 R~~-~v~~~~-~~~~~~~l~~L~~~ea~ 357 (963)
.+. .+.... .....+++.+.+..+..
T Consensus 147 n~~~~il~tI~SRc~~i~f~~~~~~~~i 174 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKPPSRLEAI 174 (325)
T ss_pred CChhhccchhhhcceeeecCCchHHHHH
Confidence 743 333322 23356667664444333
No 232
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.72 E-value=0.061 Score=58.17 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=39.5
Q ss_pred ccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
.|...+.++=..+....+...+..+ +.|.|.|.+|+||||+|+.++.++...|
T Consensus 40 ~p~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 40 VPDIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 3445556666666677777777532 4589999999999999999999876544
No 233
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.00074 Score=68.81 Aligned_cols=68 Identities=28% Similarity=0.408 Sum_probs=43.2
Q ss_pred cCCCcCCccccCCCCCCeeecccc--cccccCCcccCCCCCCcEEEecCccccccC--ccccCCCCCcEEEccCCC
Q 002125 645 SSLQSLPSSLCMFKSLTSLEIIDC--QNFMMLPYELGNLKALEMLIVDGTAIREVP--KSLNQLALLFRLKLKNCS 716 (963)
Q Consensus 645 ~~l~~lP~~~~~l~~L~~L~L~~~--~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~L~~~~ 716 (963)
+.+..+|. |++|++|.++.| ...+.++....++++|++|++++|.+..+. ..+..+.+|..|++.+|.
T Consensus 56 tt~~~~P~----Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 56 TTLTNFPK----LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred eecccCCC----cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 34445565 778888888888 555666655666678888888888776321 114455556666666653
No 234
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.2 Score=55.11 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=59.7
Q ss_pred CCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCC-chhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCC
Q 002125 295 RKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRD-KQVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHP 370 (963)
Q Consensus 295 ~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 370 (963)
++.-++|+|+++.. +....|+..+..-.+++.+|.+|.+ ..++... .....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 34558889999754 4567777776655677766666655 4444332 334789999999999999886642 1
Q ss_pred CCcHHHHHHHHHHHhcCCchhHHH
Q 002125 371 DASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 371 ~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
.+ ...++..++|.|+....
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALA 224 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHH
Confidence 11 22357788999974433
No 235
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.68 E-value=0.0047 Score=65.06 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=55.5
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcC--------CCCCCHH-----
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLND--------RNVWNIE----- 287 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~--------~~~~~~~----- 287 (963)
+-++|.|.+|+||||||+.+++.++.+|+..+++..+++- ...+.++.+++...-... .+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999999998888777777655331 223444545444321110 0110111
Q ss_pred ----HHHHHH--c-CCceEEEEcCCCCHH
Q 002125 288 ----SQLNRL--A-RKKFLIVFDDVTHPR 309 (963)
Q Consensus 288 ----~l~~~L--~-~k~~LlVLDdv~~~~ 309 (963)
.+.+++ + ++.+|+++||+-...
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHHH
Confidence 344555 3 789999999985443
No 236
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.66 E-value=0.023 Score=70.86 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=68.0
Q ss_pred CCCcccchhhHHHHHHhHhc-------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHH
Q 002125 196 NKDLVGVEWRIKEIESLLCT-------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 268 (963)
...++|-+..++.+...+.. .......+.++|+.|+|||+||+.+++.+-..-...+-+ +..+..+...+..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~ 586 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSK 586 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHH
Confidence 36789999999999887752 112234667899999999999999998763322222222 2222222222222
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHcCCc-eEEEEcCCCC--HHHHHHHHHhcc
Q 002125 269 LQKELLSKLLNDRNVWNIESQLNRLARKK-FLIVFDDVTH--PRQIESLIRRLD 319 (963)
Q Consensus 269 l~~~ll~~l~~~~~~~~~~~l~~~L~~k~-~LlVLDdv~~--~~~~~~l~~~l~ 319 (963)
+ ...-.+.........+.+.++.++ -+++||+++. .+.+..|+..+.
T Consensus 587 l----~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 587 L----IGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred h----cCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 1 100000000122335666676665 4888999964 344666665554
No 237
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.036 Score=64.00 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=85.9
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCC-ceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFE-GSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKK 297 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~ 297 (963)
....|.|.|..|+|||+||+++++.+...-. ++.++++ .. .....+..+++.+-. .+.+.+...+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~C-s~-l~~~~~e~iQk~l~~------------vfse~~~~~P 495 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSC-ST-LDGSSLEKIQKFLNN------------VFSEALWYAP 495 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEec-hh-ccchhHHHHHHHHHH------------HHHHHHhhCC
Confidence 3457899999999999999999997753322 2233331 11 112234444443322 2334566789
Q ss_pred eEEEEcCCCCHH------------HHHHHHHhc----cC-CCCCce--EEEEeCCchhhhcC-----CcceEEEeccCCH
Q 002125 298 FLIVFDDVTHPR------------QIESLIRRL----DR-LASGSR--VIITTRDKQVLKNC-----RARQIFRMKELED 353 (963)
Q Consensus 298 ~LlVLDdv~~~~------------~~~~l~~~l----~~-~~~gs~--IivTTR~~~v~~~~-----~~~~~~~l~~L~~ 353 (963)
-+|||||++... ..+.+...+ .. ...+.+ +|.|....+..... -......+..+..
T Consensus 496 SiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 496 SIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcch
Confidence 999999985421 111111111 11 123343 45555544332211 1234677888888
Q ss_pred HHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCC-chhHHHh
Q 002125 354 ADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGV-PLALKVL 395 (963)
Q Consensus 354 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~l 395 (963)
.+-.++++... .... .....+...-+..+|+|. |.-++++
T Consensus 576 ~~R~~IL~~~~-s~~~-~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 576 TRRKEILTTIF-SKNL-SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred hHHHHHHHHHH-Hhhh-hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 88888776554 2221 112223334477777774 4444443
No 238
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.64 E-value=0.00018 Score=77.31 Aligned_cols=229 Identities=18% Similarity=0.225 Sum_probs=104.2
Q ss_pred cCCCCcEEeecCCCCccccc-c-ccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCc--C
Q 002125 575 CLSNLKKLYIVDCSKLESIS-S-SIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQS--L 650 (963)
Q Consensus 575 ~L~~L~~L~L~~~~~~~~lp-~-~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~--l 650 (963)
++++|++|++..|..+...- + -...+++|++|++|.|..... .++. -...||..+.. +...+|..++. +
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~-~gv~-~~~rG~~~l~~-----~~~kGC~e~~le~l 260 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG-NGVQ-ALQRGCKELEK-----LSLKGCLELELEAL 260 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc-Ccch-HHhccchhhhh-----hhhcccccccHHHH
Confidence 56678888888776655432 1 123477888888888754322 0000 01122222111 11112222110 0
Q ss_pred CccccCCCCCCeeecccccccccCC--cccCCCCCCcEEEecCccc-cccCc-c-ccCCCCCcEEEccCCCCCCCCCccc
Q 002125 651 PSSLCMFKSLTSLEIIDCQNFMMLP--YELGNLKALEMLIVDGTAI-REVPK-S-LNQLALLFRLKLKNCSELDGISSSI 725 (963)
Q Consensus 651 P~~~~~l~~L~~L~L~~~~~~~~~p--~~~~~l~~L~~L~L~~n~l-~~lp~-~-~~~l~~L~~L~L~~~~~l~~lp~~~ 725 (963)
-..=+...-+..+++..|..+.... ..-..+..|+.|+.+++.- +..+- . ..+..+|+.|.+..|+..+..-...
T Consensus 261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~ 340 (483)
T KOG4341|consen 261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM 340 (483)
T ss_pred HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh
Confidence 0000112223334444443322211 1112344555555554322 21111 1 2345667777776665433221111
Q ss_pred ccccCCCCCcEEEccCCCCCC--cCccccCCCCCccEEEcCCCCCc------ccCcccCCCCCCCEEECcCCCCc--ccC
Q 002125 726 FSLCMFKSLTSLEIIDCQNFM--ILPDELGNLKALETLIIDGTAMR------EVPESLGQLSSVKNLVLTNNNLK--RLP 795 (963)
Q Consensus 726 ~~l~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~L~~n~l~------~lp~~l~~l~~L~~L~Ls~n~l~--~lp 795 (963)
-+ .+.+.|+.+++.+|.... .+...-.+++.|+.|.|++|.+. .+...-..+..|..|.|+++... ..-
T Consensus 341 l~-rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 341 LG-RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred hh-cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 00 125566666666664322 12222345667777777766432 12233345566777778777543 122
Q ss_pred ccccCCCCCCEEEecc
Q 002125 796 ESLNQLSSLEYLQLHL 811 (963)
Q Consensus 796 ~~l~~l~~L~~L~L~~ 811 (963)
+.+..+++|+.++|..
T Consensus 420 e~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 420 EHLSICRNLERIELID 435 (483)
T ss_pred HHHhhCcccceeeeec
Confidence 4456667777777654
No 239
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.01 Score=65.98 Aligned_cols=129 Identities=18% Similarity=0.180 Sum_probs=77.1
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHH-HHHHhhhcCCCCCCHHHHHHHHcCC
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQK-ELLSKLLNDRNVWNIESQLNRLARK 296 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~-~ll~~l~~~~~~~~~~~l~~~L~~k 296 (963)
.+...+.+.|++|+|||+||..++. ...|+.+-.++. ..--++.+-.+ ..+.. ...+.-+..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiSp----e~miG~sEsaKc~~i~k-----------~F~DAYkS~ 598 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIISP----EDMIGLSESAKCAHIKK-----------IFEDAYKSP 598 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeCh----HHccCccHHHHHHHHHH-----------HHHHhhcCc
Confidence 3456788999999999999999886 467886554431 00011111100 01111 122233445
Q ss_pred ceEEEEcCCCCHHH------------HHHHHHhc---cCCCCCceEEEEeCCchhhhcCCc----ceEEEeccCCH-HHH
Q 002125 297 KFLIVFDDVTHPRQ------------IESLIRRL---DRLASGSRVIITTRDKQVLKNCRA----RQIFRMKELED-ADA 356 (963)
Q Consensus 297 ~~LlVLDdv~~~~~------------~~~l~~~l---~~~~~gs~IivTTR~~~v~~~~~~----~~~~~l~~L~~-~ea 356 (963)
--.||+||++..-+ +++|+..+ +..+..--|+-||....++..++. ...+.|+.++. ++.
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 67899999976543 34444333 323334456668888888888764 34788998887 677
Q ss_pred HHHHHHh
Q 002125 357 HKLFCQC 363 (963)
Q Consensus 357 ~~Lf~~~ 363 (963)
.+.++..
T Consensus 679 ~~vl~~~ 685 (744)
T KOG0741|consen 679 LEVLEEL 685 (744)
T ss_pred HHHHHHc
Confidence 7766553
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.014 Score=61.58 Aligned_cols=74 Identities=27% Similarity=0.250 Sum_probs=44.8
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCce
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKF 298 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~ 298 (963)
...-+.++|.+|+|||.||.++.+++...--.+.|+. ..++..++....... .....+.+.++ +-=
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~~~~---~~~~~l~~~l~-~~d 169 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAFDEG---RLEEKLLRELK-KVD 169 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcC---chHHHHHHHhh-cCC
Confidence 4456899999999999999999999884434455553 223333333332220 11123333333 334
Q ss_pred EEEEcCCC
Q 002125 299 LIVFDDVT 306 (963)
Q Consensus 299 LlVLDdv~ 306 (963)
||||||+-
T Consensus 170 lLIiDDlG 177 (254)
T COG1484 170 LLIIDDIG 177 (254)
T ss_pred EEEEeccc
Confidence 88999984
No 241
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.60 E-value=0.025 Score=69.35 Aligned_cols=159 Identities=15% Similarity=0.184 Sum_probs=85.3
Q ss_pred CCcccchhhHHHHHHhHhc----CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCT----GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKE 272 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 272 (963)
...+|.++-.++|.++|.. +.....++.++|++|+||||+|+.++..+...|-... +..+ .+...+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~-~~~~------~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA-LGGV------RDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE-cCCC------CCHHHhccc
Confidence 4689999999999888872 1223467999999999999999999987654432211 1111 111111100
Q ss_pred HHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHHH------HHHHHHhccCC---------------CCCceEEEEe
Q 002125 273 LLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPRQ------IESLIRRLDRL---------------ASGSRVIITT 331 (963)
Q Consensus 273 ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~------~~~l~~~l~~~---------------~~gs~IivTT 331 (963)
- ....+.....-...+. ......-+++||.++.... .+.+...+... -....+|.|+
T Consensus 395 ~-~~~~g~~~G~~~~~l~-~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta 472 (784)
T PRK10787 395 R-RTYIGSMPGKLIQKMA-KVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS 472 (784)
T ss_pred h-hccCCCCCcHHHHHHH-hcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcC
Confidence 0 0000000000011111 1122344788999864321 34555444310 1233445555
Q ss_pred CCchhhhc-CCcceEEEeccCCHHHHHHHHHHhh
Q 002125 332 RDKQVLKN-CRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 332 R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
....+... .+...++++.+++.+|-.++..++.
T Consensus 473 N~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 473 NSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 43322111 1223578999999999998877765
No 242
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.00088 Score=68.25 Aligned_cols=80 Identities=25% Similarity=0.297 Sum_probs=49.3
Q ss_pred CCCCcEEEccCC--CCCCcCccccCCCCCccEEEcCCCCCcccC--cccCCCCCCCEEECcCCCCcccC----ccccCCC
Q 002125 731 FKSLTSLEIIDC--QNFMILPDELGNLKALETLIIDGTAMREVP--ESLGQLSSVKNLVLTNNNLKRLP----ESLNQLS 802 (963)
Q Consensus 731 l~~L~~L~l~~~--~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp----~~l~~l~ 802 (963)
|++|+.|.++.| +..+.++.....+++|++|++++|++..+. ..+..+.+|..|++.+|..+.+- ..+.-++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 566666666666 444444444555677777777777776421 12455667777888887666543 2245667
Q ss_pred CCCEEEec
Q 002125 803 SLEYLQLH 810 (963)
Q Consensus 803 ~L~~L~L~ 810 (963)
+|++|+-.
T Consensus 144 ~L~~LD~~ 151 (260)
T KOG2739|consen 144 SLKYLDGC 151 (260)
T ss_pred hhcccccc
Confidence 77776653
No 243
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.57 E-value=0.003 Score=68.86 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=42.3
Q ss_pred CCCcccchhhHHHHHHhHhcC----CCCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 196 NKDLVGVEWRIKEIESLLCTG----FAGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
...++|.++.++++.+++... ....++++|+|++|+||||||+.+++.+..
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 347999999999999988732 234688999999999999999999986643
No 244
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.53 E-value=0.021 Score=57.89 Aligned_cols=172 Identities=19% Similarity=0.234 Sum_probs=95.8
Q ss_pred CCcccchhhHHH---HHHhHhc----CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 197 KDLVGVEWRIKE---IESLLCT----GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 197 ~~~vGr~~~~~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
++.||.+...++ |.+.|.. +.-.++-|..+|++|.|||.+|+++++.....|- -+. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l---~vk-a------------ 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL---LVK-A------------ 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE---Eec-h------------
Confidence 567888776654 4455542 2234788999999999999999999986433221 111 0
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHH-cCCceEEEEcCCCCH--------------HHHHHHHHhccCC--CCCceEEEEeC
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRL-ARKKFLIVFDDVTHP--------------RQIESLIRRLDRL--ASGSRVIITTR 332 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~--------------~~~~~l~~~l~~~--~~gs~IivTTR 332 (963)
.+++.+..++. ...+..+-++. +--++.+.+|.++.. +.+.+|+..++.. +.|-..|-.|.
T Consensus 185 -t~liGehVGdg-ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN 262 (368)
T COG1223 185 -TELIGEHVGDG-ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN 262 (368)
T ss_pred -HHHHHHHhhhH-HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence 01111111100 01112222222 246899999987543 2355666555433 34555566665
Q ss_pred CchhhhcC---CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 333 DKQVLKNC---RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 333 ~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
+...+... ...+.++..--+++|-.+++..++-.-..+... -.+.++++.+|.-
T Consensus 263 ~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~S 319 (368)
T COG1223 263 RPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGMS 319 (368)
T ss_pred ChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCCC
Confidence 55444321 233567777788899999998887322222211 1456666666653
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.51 E-value=0.018 Score=56.32 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=27.6
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
++.|+|.+|+||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987766555666665
No 246
>PRK04296 thymidine kinase; Provisional
Probab=96.50 E-value=0.0076 Score=60.87 Aligned_cols=107 Identities=18% Similarity=0.117 Sum_probs=60.5
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCC---CCCHHHHHHHH---c
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRN---VWNIESQLNRL---A 294 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~---~~~~~~l~~~L---~ 294 (963)
.++.|+|..|.||||+|..++.+...+...++++.. ......+... +.+.++.... ....+.+.+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~~~~----i~~~lg~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYGEGK----VVSRIGLSREAIPVSSDTDIFELIEEEG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--cccccccCCc----EecCCCCcccceEeCChHHHHHHHHhhC
Confidence 467899999999999999999887666544444421 0011111111 2222211110 01222222222 2
Q ss_pred CCceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEEEeCCch
Q 002125 295 RKKFLIVFDDVTH--PRQIESLIRRLDRLASGSRVIITTRDKQ 335 (963)
Q Consensus 295 ~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~ 335 (963)
++.-+||+|.+.- .+++.++...+. ..|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 3556899999854 344555554433 46889999999854
No 247
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.50 E-value=0.025 Score=68.88 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCCcccchhhHHHHHHhHhcC-------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHH
Q 002125 196 NKDLVGVEWRIKEIESLLCTG-------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 268 (963)
...++|-++.++.|.+.+... ......+.++|++|+|||++|+.++..+... .+.+ +..+..+...+
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~---~i~i-d~se~~~~~~~-- 530 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRF-DMSEYMERHTV-- 530 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCC---cEEe-echhhcccccH--
Confidence 356899999999998887621 1224578899999999999999998876322 1222 22222221111
Q ss_pred HHHHHHHhhhcCCCC----CCHHHHHHHHcCC-ceEEEEcCCCCH--HHHHHHHHhcc
Q 002125 269 LQKELLSKLLNDRNV----WNIESQLNRLARK-KFLIVFDDVTHP--RQIESLIRRLD 319 (963)
Q Consensus 269 l~~~ll~~l~~~~~~----~~~~~l~~~L~~k-~~LlVLDdv~~~--~~~~~l~~~l~ 319 (963)
..+.+.... .....+.+.++.+ ..+|+||+++.. +.+..++..+.
T Consensus 531 ------~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 531 ------SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred ------HHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 222221111 1222444555544 459999999765 34555655543
No 248
>PHA00729 NTP-binding motif containing protein
Probab=96.50 E-value=0.011 Score=60.26 Aligned_cols=27 Identities=37% Similarity=0.365 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+...|.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998764
No 249
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.50 E-value=0.021 Score=59.63 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=35.7
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC------CceEEEE
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQ 255 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~ 255 (963)
.|.++|..+-..-.++.|+|.+|+|||+||.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44455554445567999999999999999999987655444 5667776
No 250
>PRK04132 replication factor C small subunit; Provisional
Probab=96.48 E-value=0.058 Score=65.91 Aligned_cols=149 Identities=18% Similarity=0.222 Sum_probs=89.3
Q ss_pred cCCCChhhHHHHHHHHH-hccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCC
Q 002125 228 IGGIGKTTIADAVFNKI-SRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVT 306 (963)
Q Consensus 228 ~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~ 306 (963)
+.++||||+|.++++.+ .+.++..+.--+ ++...++..+. +++......... -..+.-++|+|+++
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN---ASd~rgid~IR-~iIk~~a~~~~~---------~~~~~KVvIIDEaD 640 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN---ASDERGINVIR-EKVKEFARTKPI---------GGASFKIIFLDEAD 640 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe---CCCcccHHHHH-HHHHHHHhcCCc---------CCCCCEEEEEECcc
Confidence 78999999999999876 333332222222 23223343332 332222211100 01245799999998
Q ss_pred CH--HHHHHHHHhccCCCCCceEEEEeCCc-hhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 002125 307 HP--RQIESLIRRLDRLASGSRVIITTRDK-QVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAI 382 (963)
Q Consensus 307 ~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~ 382 (963)
.. .+..+|...+......+++|.+|.+. .+.... .....+++.+++.++..+.+.+.+-.... .-.++....|+
T Consensus 641 ~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i~~e~L~~Ia 718 (846)
T PRK04132 641 ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAIL 718 (846)
T ss_pred cCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHH
Confidence 65 35666776666555677777766654 332222 33578999999999999888776532111 12245788999
Q ss_pred HHhcCCchh
Q 002125 383 KYAQGVPLA 391 (963)
Q Consensus 383 ~~~~g~PLa 391 (963)
+.++|.+..
T Consensus 719 ~~s~GDlR~ 727 (846)
T PRK04132 719 YIAEGDMRR 727 (846)
T ss_pred HHcCCCHHH
Confidence 999998854
No 251
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.48 E-value=0.011 Score=60.10 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=63.1
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEE-EecchhhccCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHcCCce
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA-QNVREAEETGGIKDLQKELLSKLLNDRNVWN-IESQLNRLARKKF 298 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-~~~l~~~L~~k~~ 298 (963)
.+|.|.|+.|.||||++..+...+.......++. .+-.+.. ..... .+..+......... .+.++..++..+=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~----~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKR----SLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCcc----ceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 3689999999999999999888776554444333 2211100 00000 01110000001122 2466777887888
Q ss_pred EEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchhh
Q 002125 299 LIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVL 337 (963)
Q Consensus 299 LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~ 337 (963)
.+++|.+.+.+.+....... ..|..++.|+-...+.
T Consensus 77 ~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 77 VILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 99999999888766655432 3455677777655443
No 252
>PRK14974 cell division protein FtsY; Provisional
Probab=96.47 E-value=0.047 Score=59.85 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
++.+|+++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999988876554
No 253
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.46 E-value=0.022 Score=57.63 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=27.0
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
++++.++|+.|+||||.+.+++.+...+-..+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 478999999999999999988887665533444443
No 254
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0091 Score=62.44 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=28.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH----hccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI----SRHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~f~~~~~~~ 255 (963)
-|+|.++|++|.|||+|++++++++ .++|..+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 4889999999999999999999954 45565555543
No 255
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.25 Score=54.20 Aligned_cols=86 Identities=12% Similarity=0.189 Sum_probs=50.1
Q ss_pred CceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCch-hhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCC
Q 002125 296 KKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQ-VLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPD 371 (963)
Q Consensus 296 k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 371 (963)
++-++|+|+++.. .....++..+.....+..+|++|.+.. +.... .....+.+.+++.+++.+.+.... ..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~ 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VA 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CC
Confidence 3344556887643 344455544443345676777777654 33222 234688999999999998886532 11
Q ss_pred CcHHHHHHHHHHHhcCCchh
Q 002125 372 ASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 372 ~~~~~~~~~i~~~~~g~PLa 391 (963)
. . ...+..++|-|+.
T Consensus 188 ~-~----~~~l~~~~g~p~~ 202 (325)
T PRK08699 188 E-P----EERLAFHSGAPLF 202 (325)
T ss_pred c-H----HHHHHHhCCChhh
Confidence 1 1 1123568898854
No 256
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.43 E-value=0.00024 Score=71.90 Aligned_cols=208 Identities=17% Similarity=0.183 Sum_probs=116.6
Q ss_pred ccccCCCCcEEeecCCCCcc-----------ccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccc
Q 002125 572 SIECLSNLKKLYIVDCSKLE-----------SISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLV 640 (963)
Q Consensus 572 ~~~~L~~L~~L~L~~~~~~~-----------~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~ 640 (963)
.+.+-.+|+..++++ -..+ .+-+.+.++++|+..+||+|-+...+
T Consensus 53 ~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~----------------------- 108 (388)
T COG5238 53 VIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF----------------------- 108 (388)
T ss_pred HHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc-----------------------
Confidence 344455566666654 1121 12234567788888888887542211
Q ss_pred cccCcCCCcCCccccCCCCCCeeecccccccccCC--------------cccCCCCCCcEEEecCccccccCcc-----c
Q 002125 641 LEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLP--------------YELGNLKALEMLIVDGTAIREVPKS-----L 701 (963)
Q Consensus 641 l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p--------------~~~~~l~~L~~L~L~~n~l~~lp~~-----~ 701 (963)
...+-..+.+-+.|++|.|++|.+ |.+. .-..+-+.|++.....|++...|.. +
T Consensus 109 ------~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 109 ------PEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred ------chHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 011112245567788888877653 3221 1123456788888888888755432 3
Q ss_pred cCCCCCcEEEccCCCCCCCCCccc-----ccccCCCCCcEEEccCCCCCCc----CccccCCCCCccEEEcCCCCCcc--
Q 002125 702 NQLALLFRLKLKNCSELDGISSSI-----FSLCMFKSLTSLEIIDCQNFMI----LPDELGNLKALETLIIDGTAMRE-- 770 (963)
Q Consensus 702 ~~l~~L~~L~L~~~~~l~~lp~~~-----~~l~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~L~~n~l~~-- 770 (963)
..-.+|+.+.+..|.. -|..+ .++..+.+|+.|++..|.++.. +...+...+.|+.|.+.+|-++.
T Consensus 182 ~sh~~lk~vki~qNgI---rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 182 ESHENLKEVKIQQNGI---RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred HhhcCceeEEeeecCc---CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence 3345788888887733 23322 1223367889999988876532 33345556778999998887762
Q ss_pred ---cCccc--CCCCCCCEEECcCCCCc-------ccCccc-cCCCCCCEEEeccCC
Q 002125 771 ---VPESL--GQLSSVKNLVLTNNNLK-------RLPESL-NQLSSLEYLQLHLRS 813 (963)
Q Consensus 771 ---lp~~l--~~l~~L~~L~Ls~n~l~-------~lp~~l-~~l~~L~~L~L~~~~ 813 (963)
+-..| ...++|..|-..+|... .+|... .++|-|..|.+.+|.
T Consensus 259 ~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 259 VKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 11112 23467777777777443 123222 345555555554433
No 257
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.42 E-value=0.007 Score=62.46 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=29.7
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.++|.|..|.|||||+..+.......|+.+.++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5779999999999999999998999997776664
No 258
>PRK06696 uridine kinase; Validated
Probab=96.42 E-value=0.0059 Score=63.56 Aligned_cols=46 Identities=30% Similarity=0.356 Sum_probs=35.9
Q ss_pred chhhHHHHHHhHhc-CCCCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 202 VEWRIKEIESLLCT-GFAGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 202 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
|++.+++|.+.+.. ..+.+.+|+|.|.+|+||||||+.+++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55666666666642 34567899999999999999999999887654
No 259
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.42 E-value=0.038 Score=66.74 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=70.1
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHH-HHHHHHcCCceE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIE-SQLNRLARKKFL 299 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~-~l~~~L~~k~~L 299 (963)
+-|.|+|++|+|||++|+.++......| +.+. ... +.... .+. ....+. .+.......+.+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~---------~~~~~----~g~-~~~~~~~~f~~a~~~~P~I 247 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD---------FVEMF----VGV-GASRVRDMFEQAKKAAPCI 247 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH---------hHHhh----hcc-cHHHHHHHHHHHHhcCCcE
Confidence 4489999999999999999988654433 1111 100 00000 000 000111 112222346889
Q ss_pred EEEcCCCCHH----------------HHHHHHHhccCCC--CCceEEEEeCCchhhhc-----CCcceEEEeccCCHHHH
Q 002125 300 IVFDDVTHPR----------------QIESLIRRLDRLA--SGSRVIITTRDKQVLKN-----CRARQIFRMKELEDADA 356 (963)
Q Consensus 300 lVLDdv~~~~----------------~~~~l~~~l~~~~--~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea 356 (963)
|++|+++... .+..++..+..+. .+.-+|.||...+.+.. -..++.+.++..+.++-
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 9999986541 1333433333322 34455557766544321 12356788999999888
Q ss_pred HHHHHHhh
Q 002125 357 HKLFCQCA 364 (963)
Q Consensus 357 ~~Lf~~~a 364 (963)
.+++..+.
T Consensus 328 ~~Il~~~~ 335 (644)
T PRK10733 328 EQILKVHM 335 (644)
T ss_pred HHHHHHHh
Confidence 88888776
No 260
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.027 Score=67.35 Aligned_cols=151 Identities=16% Similarity=0.159 Sum_probs=86.3
Q ss_pred cCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-CC-----ceEEEEecchhh----ccC
Q 002125 195 YNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-FE-----GSYFAQNVREAE----ETG 264 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~-----~~~~~~~~~~~~----~~~ 264 (963)
..+.++||++|++++.+.|......-+ .++|.+|+|||++|.-++.++... -+ ..++--++...- -..
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRG 245 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRG 245 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccC
Confidence 346689999999999999985443333 367999999999999999876432 21 222222221110 111
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----------HHHHH-HHHhccCCCCCceEEEEeCC
Q 002125 265 GIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------RQIES-LIRRLDRLASGSRVIITTRD 333 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------~~~~~-l~~~l~~~~~gs~IivTTR~ 333 (963)
.+.+-++.++..+. +.+++.|++|.+... -+... +.+.+. .|.--.|-.||-+
T Consensus 246 eFEeRlk~vl~ev~---------------~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT~~ 309 (786)
T COG0542 246 EFEERLKAVLKEVE---------------KSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATTLD 309 (786)
T ss_pred cHHHHHHHHHHHHh---------------cCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEeccHH
Confidence 22222233332222 234899999987432 12223 334443 1233345566654
Q ss_pred chh--hh----cCCcceEEEeccCCHHHHHHHHHHh
Q 002125 334 KQV--LK----NCRARQIFRMKELEDADAHKLFCQC 363 (963)
Q Consensus 334 ~~v--~~----~~~~~~~~~l~~L~~~ea~~Lf~~~ 363 (963)
+.- .. -....+.+.|...+.+++.+.++-.
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 421 10 0123467889999999999988653
No 261
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.079 Score=58.43 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=27.9
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
+.++|+|+|.+|+||||++..++..+..+-..+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 457999999999999999999988765443334444
No 262
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.35 E-value=0.062 Score=60.96 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.+.++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999988765
No 263
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.35 E-value=0.003 Score=58.66 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 264
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.35 E-value=0.0059 Score=60.10 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=32.0
Q ss_pred cccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHH
Q 002125 199 LVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 199 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
+||.+..++++.+.+..-......|.|+|..|+||+.+|+.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 47888888888777763222234567999999999999999987
No 265
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.31 E-value=0.0038 Score=59.52 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=58.6
Q ss_pred ccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhc
Q 002125 200 VGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLN 279 (963)
Q Consensus 200 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 279 (963)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-.... ..++. +. ... .. .+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~--~~~~~-~~-~~~-~~-----~~~l~~--- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRAN--GPFIV-ID-CAS-LP-----AELLEQ--- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCC--S-CCC-CC-HHC-TC-----HHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccC--CCeEE-ec-hhh-Cc-----HHHHHH---
Confidence 5777777777766653223345678999999999999999887432211 11111 00 000 11 122222
Q ss_pred CCCCCCHHHHHHHHcCCceEEEEcCCCCHH--HHHHHHHhccCC-CCCceEEEEeCCc
Q 002125 280 DRNVWNIESQLNRLARKKFLIVFDDVTHPR--QIESLIRRLDRL-ASGSRVIITTRDK 334 (963)
Q Consensus 280 ~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~l~~~-~~gs~IivTTR~~ 334 (963)
-+.--|+++|++... ....+...+... ....|+|.||+..
T Consensus 68 ---------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 ---------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 134467899997643 334444443322 5678999999854
No 266
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.1 Score=58.40 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 267
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.30 E-value=0.012 Score=61.38 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=37.6
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|++
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455556544455679999999999999999999987766667788886
No 268
>PRK07667 uridine kinase; Provisional
Probab=96.25 E-value=0.0094 Score=60.40 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=33.6
Q ss_pred HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 206 IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 206 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
++.+.+.+....+...+|+|.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 455666666555666899999999999999999999987654
No 269
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0048 Score=58.14 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=27.2
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhcc-CCceEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRH-FEGSYF 253 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~ 253 (963)
--|+|+|++|+||||+++.+++.+++. |...-|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf 39 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF 39 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE
Confidence 458999999999999999999988776 654433
No 270
>PRK10867 signal recognition particle protein; Provisional
Probab=96.23 E-value=0.079 Score=60.15 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=25.3
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
.+.+|.++|.+|+||||+|..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999999998877665
No 271
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.21 E-value=0.1 Score=58.92 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=34.1
Q ss_pred chhhHHHHHHhHh-----cCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 202 VEWRIKEIESLLC-----TGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 202 r~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
-.+-++++..||. ...-+.+++.|+|++|+||||..+.++..+
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 3455677888887 455567899999999999999999888753
No 272
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.028 Score=66.25 Aligned_cols=150 Identities=20% Similarity=0.187 Sum_probs=85.8
Q ss_pred CCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhcc--
Q 002125 197 KDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET-- 263 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~-- 263 (963)
..+.|.+...+.+.+.+.. +-...+.+.++|++|.|||.||+++++.....|-.+..- +....
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~l~sk~v 317 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----ELLSKWV 317 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----HHhcccc
Confidence 4455666666665554431 224566899999999999999999998654444322111 00000
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-------------HHHHHHHHhccCCCCCc--eEE
Q 002125 264 GGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP-------------RQIESLIRRLDRLASGS--RVI 328 (963)
Q Consensus 264 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~~~gs--~Ii 328 (963)
....+..++ ......+..++.|.+|.++.. .....++..+......+ .||
T Consensus 318 Gesek~ir~---------------~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 318 GESEKNIRE---------------LFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred chHHHHHHH---------------HHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 001111111 122233467899999998542 23445555544333333 344
Q ss_pred EEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHHHhhc
Q 002125 329 ITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFCQCAF 365 (963)
Q Consensus 329 vTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 365 (963)
-||-....... ...+..+.++.-+.++..+.|..+.-
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 45544333221 13356889999999999999998874
No 273
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.16 E-value=0.028 Score=62.74 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=37.0
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++..+...-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455556444444579999999999999999999987766656677775
No 274
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.16 E-value=0.027 Score=58.02 Aligned_cols=44 Identities=27% Similarity=0.291 Sum_probs=35.2
Q ss_pred hHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 212 LLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 212 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
+|..+-..-+++.|+|.+|+|||++|.+++......-..++|++
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34434445689999999999999999999987766667788886
No 275
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.14 E-value=0.027 Score=61.85 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=59.1
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC-CceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC---
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF-EGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV--- 283 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--- 283 (963)
++.+.+..-..+ +.+.|+|.+|+|||||++.+++.+.... +..+++..+.+ ....+.++.+.+...+......
T Consensus 122 RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCH
Confidence 355555422222 4568999999999999999999876654 33333322322 2345667777776655543211
Q ss_pred -CCHH------HHHHHH--cCCceEEEEcCCCCHH
Q 002125 284 -WNIE------SQLNRL--ARKKFLIVFDDVTHPR 309 (963)
Q Consensus 284 -~~~~------~l~~~L--~~k~~LlVLDdv~~~~ 309 (963)
.... .+.+++ .+++++||+|++....
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 1111 222222 4799999999985443
No 276
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.14 E-value=0.024 Score=60.50 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=28.9
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
.+.++++++|.+|+||||++..++..+...-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999999988776553444444
No 277
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.14 E-value=0.023 Score=56.64 Aligned_cols=37 Identities=30% Similarity=0.601 Sum_probs=32.0
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
...+|.+.|+.|+||||+|+.++.++...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4468999999999999999999999887777777764
No 278
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.99 E-value=0.02 Score=59.33 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=37.2
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
..|..+|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|++
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455566544455689999999999999999999987765555677775
No 279
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.034 Score=55.98 Aligned_cols=52 Identities=29% Similarity=0.385 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 197 KDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
.++=|.+-+.+++.+.... +-+.++-|.++|++|.|||.||++|++.-...|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 4455677777777666541 235678899999999999999999998654444
No 280
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.96 E-value=0.048 Score=64.28 Aligned_cols=50 Identities=28% Similarity=0.423 Sum_probs=39.2
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
|...++++|.+..++.+...+... ....+.|+|.+|+|||++|+.+++..
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344567999999999998776532 33456899999999999999998743
No 281
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.95 E-value=0.079 Score=61.69 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=44.0
Q ss_pred cccCCCcccchhhHHHHHHhHhc---CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT---GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
|....+++--.+-++++..||.. +....+++.++|++|+||||.++.+++.+ .|+..-|..
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 33444555556677888888873 33346799999999999999999999875 355555643
No 282
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.055 Score=61.55 Aligned_cols=128 Identities=23% Similarity=0.350 Sum_probs=76.1
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHH-HcCCce
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNR-LARKKF 298 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~-L~~k~~ 298 (963)
+.-|.+||++|+|||-||++|++.-.-.| +. ++ +. + ++..-.++.. ..+..+..+ -..-++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VK------GP-E----LlNkYVGESE-rAVR~vFqRAR~saPC 606 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VK------GP-E----LLNKYVGESE-RAVRQVFQRARASAPC 606 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ec------CH-H----HHHHHhhhHH-HHHHHHHHHhhcCCCe
Confidence 45588999999999999999999766555 22 11 11 1 1111111111 111222222 235799
Q ss_pred EEEEcCCCCH-------------HHHHHHHHhccCC--CCCceEEEEeCCchhh-----hcCCcceEEEeccCCHHHHHH
Q 002125 299 LIVFDDVTHP-------------RQIESLIRRLDRL--ASGSRVIITTRDKQVL-----KNCRARQIFRMKELEDADAHK 358 (963)
Q Consensus 299 LlVLDdv~~~-------------~~~~~l~~~l~~~--~~gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~ 358 (963)
+|.+|.++.. ..+..|+..++.. ..|--||-.|-.+.+. ..-..+...-|+.-+.+|-.+
T Consensus 607 VIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733|consen 607 VIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred EEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHH
Confidence 9999998642 2356666665543 2355556555433332 222345677888889999999
Q ss_pred HHHHhhc
Q 002125 359 LFCQCAF 365 (963)
Q Consensus 359 Lf~~~a~ 365 (963)
+++..+-
T Consensus 687 ILK~~tk 693 (802)
T KOG0733|consen 687 ILKTITK 693 (802)
T ss_pred HHHHHhc
Confidence 9988773
No 283
>PRK07261 topology modulation protein; Provisional
Probab=95.91 E-value=0.027 Score=55.81 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 284
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.89 E-value=0.018 Score=64.68 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+.+|.+.|.+|+||||+|.+++.++
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~l 279 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRL 279 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998864
No 285
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.82 E-value=0.11 Score=54.65 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=36.9
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
..|-++|..+-..-.++.|.|.+|+|||++|.++.......-+.++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455566555556789999999999999999998775445566777775
No 286
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.81 E-value=0.014 Score=56.07 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=30.4
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
..+|.|+|.+|.||||||+++..++.+.-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368999999999999999999999988877777775
No 287
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.80 E-value=0.072 Score=51.44 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=62.1
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhh-----hcC-----CCC-C-----
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKL-----LND-----RNV-W----- 284 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-----~~~-----~~~-~----- 284 (963)
..|-|++..|.||||+|...+-+...+-..+.++.-+... ...+-....+.+ ..+ +.. .+. .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 4677888889999999999988766665555555433321 112222222222 000 000 000 1
Q ss_pred --CHHHHHHHHcC-CceEEEEcCCCCHH-----HHHHHHHhccCCCCCceEEEEeCCch
Q 002125 285 --NIESQLNRLAR-KKFLIVFDDVTHPR-----QIESLIRRLDRLASGSRVIITTRDKQ 335 (963)
Q Consensus 285 --~~~~l~~~L~~-k~~LlVLDdv~~~~-----~~~~l~~~l~~~~~gs~IivTTR~~~ 335 (963)
..+..++.+.. .-=|+|||++...- ..+.+...+.....+..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11123334443 45599999984431 23444444444456789999999863
No 288
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.78 E-value=0.012 Score=67.48 Aligned_cols=51 Identities=25% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCcccchhhHHHHHHhHh----cCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 197 KDLVGVEWRIKEIESLLC----TGFAGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
.+++|.++.+++|.+.|. ......+++.++|++|+|||+||+.+++.+.+.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 468999999999999883 234456899999999999999999999865443
No 289
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.77 E-value=0.024 Score=62.48 Aligned_cols=46 Identities=22% Similarity=0.130 Sum_probs=37.3
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
..++|....++++.+.+..-.....-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 5689999999988887764333345688999999999999999875
No 290
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.77 E-value=0.15 Score=60.70 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=40.3
Q ss_pred ccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 194 SYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
.....++|....++++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 34568999999999988887643333456789999999999999999875
No 291
>PRK06762 hypothetical protein; Provisional
Probab=95.76 E-value=0.042 Score=54.19 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+.+|.|.|++|+||||+|+.+..++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 292
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.064 Score=58.53 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=58.5
Q ss_pred HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC--
Q 002125 206 IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV-- 283 (963)
Q Consensus 206 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-- 283 (963)
+.++.+.|-.+--.-.+|.|-|.+|||||||..+++.++..+. .+.|+.. .....++. --...+.-....
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG------EES~~Qik-lRA~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG------EESLQQIK-LRADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC------CcCHHHHH-HHHHHhCCCccceE
Confidence 3455555643333457899999999999999999999998777 7777752 22222221 112222211111
Q ss_pred ----CCHHHHHHHHc-CCceEEEEcCCC
Q 002125 284 ----WNIESQLNRLA-RKKFLIVFDDVT 306 (963)
Q Consensus 284 ----~~~~~l~~~L~-~k~~LlVLDdv~ 306 (963)
.+++.+.+.+. .++-++|+|.+.
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 45666666664 578899999874
No 293
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.15 Score=51.45 Aligned_cols=143 Identities=19% Similarity=0.271 Sum_probs=80.5
Q ss_pred cchhhHHHHHHhHhcC-----------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 201 GVEWRIKEIESLLCTG-----------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 201 Gr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
|.++++++|.+.+... -..++-+.++|++|.|||-||++|++. ..+.|+. +.. .++
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~fir-vsg-------sel 217 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIR-VSG-------SEL 217 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEE-ech-------HHH
Confidence 4577777777766522 234667889999999999999999863 3344444 211 122
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHH----HcCCceEEEEcCCCCH-------------HH---HHHHHHhccCC--CCCceE
Q 002125 270 QKELLSKLLNDRNVWNIESQLNR----LARKKFLIVFDDVTHP-------------RQ---IESLIRRLDRL--ASGSRV 327 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~----L~~k~~LlVLDdv~~~-------------~~---~~~l~~~l~~~--~~gs~I 327 (963)
.+..+.+ ...+.++. -.+-+-.|.+|.+++. +. .-+++..++.+ ...-+|
T Consensus 218 vqk~ige--------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikv 289 (404)
T KOG0728|consen 218 VQKYIGE--------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKV 289 (404)
T ss_pred HHHHhhh--------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEE
Confidence 2222111 01111111 1356788899988652 11 22334444433 345677
Q ss_pred EEEeCCchhhh-----cCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 328 IITTRDKQVLK-----NCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 328 ivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
|+.|..-.++. .-..++.++.++-+++.-.++++-+.
T Consensus 290 imatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 290 IMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 77665443332 22345667788877777777776554
No 294
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.69 E-value=0.041 Score=58.58 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=60.3
Q ss_pred hHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCC
Q 002125 205 RIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVW 284 (963)
Q Consensus 205 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 284 (963)
.++.+..++.. ...+|.|.|..|.||||++..+.+.+...-..++.+.+..+... .+...+ .+.......
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~~q~------~v~~~~~~~ 137 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGINQV------QVNEKAGLT 137 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCceEE------EeCCcCCcC
Confidence 34445555532 23589999999999999999988776442223444443322111 111000 000110112
Q ss_pred CHHHHHHHHcCCceEEEEcCCCCHHHHHHHHHh
Q 002125 285 NIESQLNRLARKKFLIVFDDVTHPRQIESLIRR 317 (963)
Q Consensus 285 ~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~ 317 (963)
-.+.++..++..+=.|+++++.+.+....+...
T Consensus 138 ~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 138 FARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred HHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 234777888888999999999999876655443
No 295
>PTZ00494 tuzin-like protein; Provisional
Probab=95.66 E-value=1.3 Score=49.13 Aligned_cols=204 Identities=9% Similarity=0.014 Sum_probs=114.1
Q ss_pred hhhHHHHHHHhc-------------cccCCCCCCCchh--hHHHHHHHHHHHhhhccc------ccccCCCcccchhhHH
Q 002125 149 MHRWANALTEAA-------------NLSGFDSDVIRPE--SKLVEEIANEILERLEET------FQSYNKDLVGVEWRIK 207 (963)
Q Consensus 149 ~~~w~~al~~~~-------------~~~g~~~~~~~~e--~~~i~~i~~~v~~~l~~~------~~~~~~~~vGr~~~~~ 207 (963)
-+.||-++++-+ ..-||.+++++.+ +...+-.++...+..++. .+.....+|.|++|-.
T Consensus 302 ERd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~ 381 (664)
T PTZ00494 302 DTNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEA 381 (664)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHH
Confidence 446777776543 2345666654433 233444455555554432 2455688999999999
Q ss_pred HHHHhHhc-CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC---
Q 002125 208 EIESLLCT-GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV--- 283 (963)
Q Consensus 208 ~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--- 283 (963)
.+.+.|.. +...+|++++.|.-|.||++|.+....+ .--..+|++ ++. .++.++.+.+.++-..-.
T Consensus 382 ~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~VD-VRg------~EDtLrsVVKALgV~nve~CG 451 (664)
T PTZ00494 382 LVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHVD-VGG------TEDTLRSVVRALGVSNVEVCG 451 (664)
T ss_pred HHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEEE-ecC------CcchHHHHHHHhCCCChhhhc
Confidence 99888874 4467899999999999999999876653 333456664 322 223334444444433222
Q ss_pred CCHHHHHH-------HHcCCceEEEEc--CCCCHHH-HHHHHHhccCCCCCceEEEEeCCchhhh---cCCcceEEEecc
Q 002125 284 WNIESQLN-------RLARKKFLIVFD--DVTHPRQ-IESLIRRLDRLASGSRVIITTRDKQVLK---NCRARQIFRMKE 350 (963)
Q Consensus 284 ~~~~~l~~-------~L~~k~~LlVLD--dv~~~~~-~~~l~~~l~~~~~gs~IivTTR~~~v~~---~~~~~~~~~l~~ 350 (963)
+.++.+.+ ...++.=+||+- +-.+..- ..+. ..+.....-++|++----+.+-. ..+.-..|.++.
T Consensus 452 DlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~VPn 530 (664)
T PTZ00494 452 DLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCIPP 530 (664)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhhccCccceeEecCC
Confidence 23332222 234555555553 2222221 1111 11222234567776544333211 112345899999
Q ss_pred CCHHHHHHHHHHh
Q 002125 351 LEDADAHKLFCQC 363 (963)
Q Consensus 351 L~~~ea~~Lf~~~ 363 (963)
++.++|.++-.+.
T Consensus 531 FSr~QAf~YtqH~ 543 (664)
T PTZ00494 531 FSRRQAFAYAEHT 543 (664)
T ss_pred cCHHHHHHHHhcc
Confidence 9999999875443
No 296
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.66 E-value=0.71 Score=47.81 Aligned_cols=227 Identities=15% Similarity=0.213 Sum_probs=121.4
Q ss_pred cCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc------cCCceEEEEecch------h--
Q 002125 195 YNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR------HFEGSYFAQNVRE------A-- 260 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~------~-- 260 (963)
....+.++++.-..+.++.. .++.+...++|+.|.||-|.+..+.+.+-. +-+..-|...... .
T Consensus 11 sl~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 33457777777777777765 345778889999999999999888875422 1223333321111 0
Q ss_pred --------hc-cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCce-EEEEcCCCCH--HHHHHHHHhccCCCCCceEE
Q 002125 261 --------EE-TGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKF-LIVFDDVTHP--RQIESLIRRLDRLASGSRVI 328 (963)
Q Consensus 261 --------~~-~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~-LlVLDdv~~~--~~~~~l~~~l~~~~~gs~Ii 328 (963)
|+ ...-+.+.++++.++...... +.-..+.+ ++|+-.++.. +.-.++..........+|+|
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi-------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch-------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 00 011123444444444332211 01112334 4556555543 22233443333345677877
Q ss_pred EEeCCc-hhhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch-hHHHh---hh--hc-
Q 002125 329 ITTRDK-QVLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL-ALKVL---GH--HL- 399 (963)
Q Consensus 329 vTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~l---~~--~L- 399 (963)
+..-+- .+.... ...-.+++...+++|....+++.+-+..-.-+ .+++.+|+++++|+-. ||-.+ .- ..
T Consensus 162 l~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~ 239 (351)
T KOG2035|consen 162 LVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPF 239 (351)
T ss_pred EEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccc
Confidence 644322 111111 12346889999999999999887743333222 6889999999999742 22222 11 10
Q ss_pred -C---CCCHHHHHHHHHHhh-----cCCChhHHHHHHHHhhC
Q 002125 400 -C---GRSKEEWESAMRKLE-----VIPDKEIQEVLKISYDS 432 (963)
Q Consensus 400 -~---~~~~~~w~~~l~~l~-----~~~~~~i~~~l~~sy~~ 432 (963)
. ....-+|+-++.+.. +..+..+..+-..-|+-
T Consensus 240 ~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeL 281 (351)
T KOG2035|consen 240 TANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYEL 281 (351)
T ss_pred cccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 0 123468988877643 22334444444444443
No 297
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.66 E-value=0.26 Score=57.61 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=36.8
Q ss_pred HHHHHHcCCceEEEEcCCCC---HHHHHHHHHhccCCCCCceEEEEeCCchhhhcCCcceEEEecc
Q 002125 288 SQLNRLARKKFLIVFDDVTH---PRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMKE 350 (963)
Q Consensus 288 ~l~~~L~~k~~LlVLDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~ 350 (963)
.+...+-.++-+||||.--+ .+..+.+...+..+ ...||+.|-++....... .+++.+++
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 34444567899999997533 23344444444322 345888899998877654 45666654
No 298
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.65 E-value=0.039 Score=59.85 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=36.4
Q ss_pred HHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 208 EIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 208 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 4445554 44455689999999999999999998887666656677875
No 299
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.62 E-value=0.074 Score=55.81 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=35.9
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
..+-++|..+-..-.++.|+|.+|+|||++|.++......+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455555544455689999999999999999999765444556677775
No 300
>PRK09354 recA recombinase A; Provisional
Probab=95.51 E-value=0.037 Score=60.52 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=37.9
Q ss_pred HHHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 207 KEIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 207 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
..|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|++
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34555665 44455689999999999999999999887666667778886
No 301
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.50 E-value=0.048 Score=66.87 Aligned_cols=49 Identities=20% Similarity=0.141 Sum_probs=38.5
Q ss_pred CCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 196 NKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
...++|+...++++.+.+..-......|.|+|..|+|||++|+.+++.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3579999999998877666332334568899999999999999998743
No 302
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.50 E-value=0.071 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.7
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986543
No 303
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.49 E-value=0.055 Score=56.84 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=34.0
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc------CCceEEEE
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH------FEGSYFAQ 255 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 255 (963)
.|.++|..+-..-.++.|+|.+|+|||+||.+++...... -..++|++
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3444554444456899999999999999999997543222 25677876
No 304
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.49 E-value=0.027 Score=55.59 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
++.|.|.+|.||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999999998764
No 305
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.48 E-value=0.089 Score=51.46 Aligned_cols=113 Identities=21% Similarity=0.148 Sum_probs=59.8
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhh--cC------CCC-C-------
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLL--ND------RNV-W------- 284 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~------~~~-~------- 284 (963)
..|-|++-.|.||||.|...+-+...+--.++.+.-+... ...+-....+.+.-.+. +. .+. .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 5778888899999999999888765554444433322221 11122222222200000 00 000 0
Q ss_pred CHHHHHHHHcC-CceEEEEcCCCCHH-----HHHHHHHhccCCCCCceEEEEeCCc
Q 002125 285 NIESQLNRLAR-KKFLIVFDDVTHPR-----QIESLIRRLDRLASGSRVIITTRDK 334 (963)
Q Consensus 285 ~~~~l~~~L~~-k~~LlVLDdv~~~~-----~~~~l~~~l~~~~~gs~IivTTR~~ 334 (963)
..+..++.+.. .-=|+|||.+...- ..+.+...+....++..||+|-|+.
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 11233444444 44599999984322 1333444444446778999999986
No 306
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.018 Score=66.55 Aligned_cols=52 Identities=31% Similarity=0.424 Sum_probs=44.0
Q ss_pred CCcccchhhHHHHHHhHh----cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 197 KDLVGVEWRIKEIESLLC----TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
++-+|+++-.++|.+++. .++-+-++++.+|++|||||.+|+.++..+..+|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 456899999999999887 3445568999999999999999999999876665
No 307
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.42 E-value=0.082 Score=60.84 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=37.4
Q ss_pred HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 206 IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 206 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555666544445679999999999999999999987765445667775
No 308
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.36 E-value=0.013 Score=54.88 Aligned_cols=22 Identities=50% Similarity=0.780 Sum_probs=20.3
Q ss_pred EEEEccCCCChhhHHHHHHHHH
Q 002125 223 LGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~ 244 (963)
|+|.|.+|+||||+|+++..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 309
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.34 E-value=0.074 Score=58.66 Aligned_cols=45 Identities=22% Similarity=0.101 Sum_probs=34.2
Q ss_pred cccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 199 LVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 199 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
+||....++++.+.+..-.....-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777777766633333456789999999999999998764
No 310
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.32 E-value=0.079 Score=60.97 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=37.8
Q ss_pred HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 206 IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 206 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45666666544455679999999999999999999887665545567775
No 311
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.039 Score=56.01 Aligned_cols=55 Identities=25% Similarity=0.353 Sum_probs=37.1
Q ss_pred CcccchhhHHHHHHhHh-----------cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEec
Q 002125 198 DLVGVEWRIKEIESLLC-----------TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNV 257 (963)
Q Consensus 198 ~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~ 257 (963)
++=|-.++++++.+... .+-+.++-|.++|++|.|||-+|++|+++- ..+|+..+
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvi 243 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVI 243 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeeh
Confidence 34445555555554433 233556778999999999999999999874 34556543
No 312
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.28 E-value=0.17 Score=51.38 Aligned_cols=116 Identities=24% Similarity=0.300 Sum_probs=59.7
Q ss_pred hHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCC
Q 002125 205 RIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVW 284 (963)
Q Consensus 205 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 284 (963)
+.+.+...+.. +-+++.|.|.+|.||||+++.+...+...-..++++.-. ......+....... ..
T Consensus 6 Q~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT---------~~Aa~~L~~~~~~~--a~ 71 (196)
T PF13604_consen 6 QREAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT---------NKAAKELREKTGIE--AQ 71 (196)
T ss_dssp HHHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS---------HHHHHHHHHHHTS---EE
T ss_pred HHHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc---------HHHHHHHHHhhCcc--hh
Confidence 34445555542 236788999999999999999888766653334444311 11111222221110 01
Q ss_pred CHHHHHHHH----------cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCchh
Q 002125 285 NIESQLNRL----------ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQV 336 (963)
Q Consensus 285 ~~~~l~~~L----------~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v 336 (963)
.+..+.... ..++-+||+|++... .++..+..... ..|+++|+.--..+.
T Consensus 72 Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL 133 (196)
T PF13604_consen 72 TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQL 133 (196)
T ss_dssp EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSH
T ss_pred hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchh
Confidence 111111110 123459999998654 45777766654 357888887765543
No 313
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.53 Score=51.97 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=28.6
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
+.++++|+|+.|+||||++..++.....+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999876654434455553
No 314
>PRK04328 hypothetical protein; Provisional
Probab=95.25 E-value=0.19 Score=53.10 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=35.3
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.|.++|..+-..-.++.|.|.+|.|||+||.++......+-+.++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 444555544445679999999999999999998776545556677775
No 315
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.3 Score=54.76 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.7
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988664
No 316
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.22 E-value=0.18 Score=54.09 Aligned_cols=131 Identities=16% Similarity=0.252 Sum_probs=66.6
Q ss_pred cccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHH--HH-HhccCCceEEEEecchhhcc----CC-----H
Q 002125 199 LVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVF--NK-ISRHFEGSYFAQNVREAEET----GG-----I 266 (963)
Q Consensus 199 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~--~~-~~~~f~~~~~~~~~~~~~~~----~~-----~ 266 (963)
+-+|..+..--.++|. .+++..|.+.|.+|.|||.||.+.. .- .+..|...+-...+-...+. ++ +
T Consensus 226 i~prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 226 IRPRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred cCcccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence 3445544443334443 2578899999999999999987654 21 23445544433222111111 11 1
Q ss_pred HHHHHHH---HHhhhcCCCC--CCHHHHH----------HHHcCC---ceEEEEcCCCCH--HHHHHHHHhccCCCCCce
Q 002125 267 KDLQKEL---LSKLLNDRNV--WNIESQL----------NRLARK---KFLIVFDDVTHP--RQIESLIRRLDRLASGSR 326 (963)
Q Consensus 267 ~~l~~~l---l~~l~~~~~~--~~~~~l~----------~~L~~k---~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~ 326 (963)
.-.+..+ ++.+...... ..++.+. ...+++ +-+||+|.+.+. .++..+. ...|.|||
T Consensus 304 ~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTil---tR~G~GsK 380 (436)
T COG1875 304 GPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTIL---TRAGEGSK 380 (436)
T ss_pred cchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHH---HhccCCCE
Confidence 1111112 1222222111 1111111 112333 568999998764 3455554 44589999
Q ss_pred EEEEeCCc
Q 002125 327 VIITTRDK 334 (963)
Q Consensus 327 IivTTR~~ 334 (963)
|+.|.-..
T Consensus 381 IVl~gd~a 388 (436)
T COG1875 381 IVLTGDPA 388 (436)
T ss_pred EEEcCCHH
Confidence 99987644
No 317
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.20 E-value=0.069 Score=59.33 Aligned_cols=102 Identities=22% Similarity=0.323 Sum_probs=60.6
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCC-CCCCHHHHHHHHcCC
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDR-NVWNIESQLNRLARK 296 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-~~~~~~~l~~~L~~k 296 (963)
..++=+-|||..|.|||.|.-.+|+.+...-..++.. ...+.++-+.+.... ..+.+..+.+.+.++
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF------------h~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~ 127 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF------------HEFMLDVHSRLHQLRGQDDPLPQVADELAKE 127 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccc------------cHHHHHHHHHHHHHhCCCccHHHHHHHHHhc
Confidence 3467789999999999999999998654321111111 122222222222222 225567777888888
Q ss_pred ceEEEEcCC--CCHHH---HHHHHHhccCCCCCceEEEEeCCc
Q 002125 297 KFLIVFDDV--THPRQ---IESLIRRLDRLASGSRVIITTRDK 334 (963)
Q Consensus 297 ~~LlVLDdv--~~~~~---~~~l~~~l~~~~~gs~IivTTR~~ 334 (963)
..||.+|.+ .|..+ +..+...+- ..|. |||+|-|.
T Consensus 128 ~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 128 SRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred CCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 889999985 33333 455554443 3455 55555544
No 318
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.19 E-value=0.084 Score=49.35 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=42.1
Q ss_pred cCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCC
Q 002125 678 LGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLK 756 (963)
Q Consensus 678 ~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 756 (963)
|.++++|+.+.+.. .+..++.. |.++++|+.+.+.++ +..++...+ .++++|+.+.+.+ .....-...|..++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F--~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAF--SNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTT--TT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeee--ecccccccccccc-cccccccccccccc
Confidence 34444555555543 34444332 445555555555442 333333221 1244555555543 22222223455566
Q ss_pred CccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCcccC-ccccCCCCC
Q 002125 757 ALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRLP-ESLNQLSSL 804 (963)
Q Consensus 757 ~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L 804 (963)
+|+.+.+..+ +..++. .|.+. +|+.+.+.. .++.++ ..+.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666666554 444433 35554 666666654 444554 234555544
No 319
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.19 E-value=0.051 Score=56.46 Aligned_cols=118 Identities=21% Similarity=0.240 Sum_probs=66.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEe--cchhhccCCHHHHHHHHHHhhhcCCCC-----C-----CH-
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN--VREAEETGGIKDLQKELLSKLLNDRNV-----W-----NI- 286 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~~~-----~-----~~- 286 (963)
-.+++|+|..|+||||+|+.+..-..-.. +.+++.. +.... .....+...+++..++..... . ..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 35899999999999999999987543333 3344331 11111 122233444555555422211 1 11
Q ss_pred -HHHHHHHcCCceEEEEcCCCCH------HHHHHHHHhccCCCCCceEEEEeCCchhhhcC
Q 002125 287 -ESQLNRLARKKFLIVFDDVTHP------RQIESLIRRLDRLASGSRVIITTRDKQVLKNC 340 (963)
Q Consensus 287 -~~l~~~L~~k~~LlVLDdv~~~------~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~ 340 (963)
-.+.+.|.-++-++|.|..-+. .+.-.++..+.. ..|-..+..|-+-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 1677788889999999986432 233333333321 2455677777776665544
No 320
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.18 E-value=0.087 Score=57.24 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=37.1
Q ss_pred HHHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 207 KEIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 207 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
..|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34445554 34455679999999999999999999887666666777886
No 321
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.4 Score=48.83 Aligned_cols=164 Identities=18% Similarity=0.251 Sum_probs=85.8
Q ss_pred CCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccC
Q 002125 196 NKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETG 264 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 264 (963)
.+.+=|.+++++++.+.+-. +-..++-|..+|++|.|||-+|++.+.+-...|-.- .
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL------------A 237 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL------------A 237 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh------------c
Confidence 35566677777776665431 223456788999999999999999886544333110 0
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHH----cCCceEEEEcCCCCH-------------HH---HHHHHHhccCCCCC
Q 002125 265 GIKDLQKELLSKLLNDRNVWNIESQLNRL----ARKKFLIVFDDVTHP-------------RQ---IESLIRRLDRLASG 324 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~L----~~k~~LlVLDdv~~~-------------~~---~~~l~~~l~~~~~g 324 (963)
+.. +..-..+ +.....++.+ ...+.+|.+|.++.. +. .-+++..+..+.+.
T Consensus 238 gPQ-----LVQMfIG----dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652|consen 238 GPQ-----LVQMFIG----DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred chH-----HHhhhhc----chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc
Confidence 000 0000000 0111111111 245788888987432 11 23445556656554
Q ss_pred --ceEEEEeCCchh-----hhcCCcceEEEeccCCHHHHHHHHHHhhcC-CCCCCCcHHHHHHH
Q 002125 325 --SRVIITTRDKQV-----LKNCRARQIFRMKELEDADAHKLFCQCAFG-GDHPDASHIELTDK 380 (963)
Q Consensus 325 --s~IivTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~-~~~~~~~~~~~~~~ 380 (963)
-+||..|..-.+ +.+-..++.++.+.-+++.-.++++-+.-+ ...++.+++++++.
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 455655543333 222234456666655555555566555533 23455567666553
No 322
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.17 E-value=1.6 Score=47.17 Aligned_cols=166 Identities=11% Similarity=0.091 Sum_probs=92.8
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc--------c-CC-ceEEEEecchhhccCCHHHHHHHHHHh
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR--------H-FE-GSYFAQNVREAEETGGIKDLQKELLSK 276 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~-f~-~~~~~~~~~~~~~~~~~~~l~~~ll~~ 276 (963)
+.+...+..+ .-.++..++|..|.||+++|..+.+.+-. . .+ ...+++ ..+ ..-.+.++. ++...
T Consensus 6 ~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g--~~i~vd~Ir-~l~~~ 80 (299)
T PRK07132 6 KFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD--KDLSKSEFL-SAINK 80 (299)
T ss_pred HHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC--CcCCHHHHH-HHHHH
Confidence 4444455322 33567779999999999999999987611 1 11 122221 000 111111211 22222
Q ss_pred hhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH--HHHHHHHhccCCCCCceEEEEeC-Cchhhhc-CCcceEEEeccCC
Q 002125 277 LLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR--QIESLIRRLDRLASGSRVIITTR-DKQVLKN-CRARQIFRMKELE 352 (963)
Q Consensus 277 l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gs~IivTTR-~~~v~~~-~~~~~~~~l~~L~ 352 (963)
+.-.. .-.+.+-++|+|+++... ...+++..+..-++.+.+|++|. ...+... .....++++.+++
T Consensus 81 ~~~~~----------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~ 150 (299)
T PRK07132 81 LYFSS----------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD 150 (299)
T ss_pred hccCC----------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCC
Confidence 21110 001467788899986553 45667777666567777776554 4444433 3346789999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 353 DADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 353 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
.++..+.+.... .+ .+.+..++...+|.=-|++.+
T Consensus 151 ~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 151 QQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 999988775431 11 133566666667633455543
No 323
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.14 E-value=0.1 Score=51.77 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=59.5
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCH-HHHHHHHHHhhhcCCC---C--CCH-------
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGI-KDLQKELLSKLLNDRN---V--WNI------- 286 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~-~~l~~~ll~~l~~~~~---~--~~~------- 286 (963)
-.+++|.|..|+|||||.+.+... ...+.+...........+ .-.+.+.+..+.-... . ..+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~-----~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYA-----SGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc-----CCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence 358999999999999999987531 111111100000000000 0001234444432211 1 111
Q ss_pred HHHHHHHcCC--ceEEEEcCCC---CHHHHHHHHHhccCC-CCCceEEEEeCCchhhhcCCcceEEEe
Q 002125 287 ESQLNRLARK--KFLIVFDDVT---HPRQIESLIRRLDRL-ASGSRVIITTRDKQVLKNCRARQIFRM 348 (963)
Q Consensus 287 ~~l~~~L~~k--~~LlVLDdv~---~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~~~~~~~~l 348 (963)
-.+...+..+ +=++++|... +....+.+...+... ..|..||++|.+...... .++++.+
T Consensus 96 l~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 96 VKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1444555666 7788899863 333333333222211 246778888888766532 4455555
No 324
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.13 E-value=0.017 Score=58.59 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=23.5
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 325
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.11 E-value=0.25 Score=56.36 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=27.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh--ccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS--RHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~ 255 (963)
.++++++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999887665 3334455553
No 326
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.10 E-value=0.032 Score=58.31 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=27.3
Q ss_pred CCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 217 FAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 217 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
.....+++|.|..|.|||||++.+...+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 45678999999999999999999998766543
No 327
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.06 E-value=0.014 Score=52.67 Aligned_cols=26 Identities=35% Similarity=0.649 Sum_probs=22.3
Q ss_pred EEEEccCCCChhhHHHHHHHHHhccC
Q 002125 223 LGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
|.|+|.+|+|||++|..++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998776554
No 328
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.04 E-value=0.052 Score=60.34 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=62.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE-EecchhhccCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHcCCc
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA-QNVREAEETGGIKDLQKELLSKLLNDRNVWN-IESQLNRLARKK 297 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-~~~l~~~L~~k~ 297 (963)
...+.|.|+.|.||||+.+.+...+.......++. .+..+... .+.. .+..+........+ .+.++..|+..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~~~~----~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-RNKR----SLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-cCcc----ceEEccccCCCCcCHHHHHHHhhccCC
Confidence 36899999999999999999988776555444443 22111100 0000 00000000011122 346777888999
Q ss_pred eEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCch
Q 002125 298 FLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQ 335 (963)
Q Consensus 298 ~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 335 (963)
=.|++|.+.+.+.+....... ..|..|+.|.-...
T Consensus 197 d~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 197 DVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred CEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 999999999888766544332 34555666665443
No 329
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.44 Score=58.17 Aligned_cols=101 Identities=16% Similarity=0.261 Sum_probs=68.9
Q ss_pred CCcccchhhHHHHHHhHhcC---C---CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTG---F---AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQ 270 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~---~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 270 (963)
+.++|-++.+..|.+.+... . ...-...+.|+.|+|||.||++++..+-+..+.-+-++ +.+.+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhh
Confidence 56789999999998888721 1 13567788999999999999999998765555544442 22333
Q ss_pred HHHHHhhhcCCCC----CCHHHHHHHHcCCce-EEEEcCCCCHH
Q 002125 271 KELLSKLLNDRNV----WNIESQLNRLARKKF-LIVFDDVTHPR 309 (963)
Q Consensus 271 ~~ll~~l~~~~~~----~~~~~l~~~L~~k~~-LlVLDdv~~~~ 309 (963)
+ .+++.+.... ...+.+.+.++++++ +|.||||+..+
T Consensus 632 e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred h--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 3 3333333221 445688899998877 56679997543
No 330
>PTZ00301 uridine kinase; Provisional
Probab=95.03 E-value=0.021 Score=58.38 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=25.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
..+|+|.|.+|.||||||+.+..++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 47899999999999999999998875544
No 331
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.02 E-value=0.1 Score=61.55 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=41.3
Q ss_pred cCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 195 YNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999999988887544445678899999999999999998753
No 332
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.01 E-value=0.18 Score=48.61 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=21.9
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhc
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
+|.|.|.+|+||||+|+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987653
No 333
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.01 E-value=0.082 Score=52.49 Aligned_cols=114 Identities=21% Similarity=0.141 Sum_probs=62.6
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHH--Hhh--hcC-----CCC-CC----
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELL--SKL--LND-----RNV-WN---- 285 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll--~~l--~~~-----~~~-~~---- 285 (963)
...|.|+|-.|-||||.|...+-+...+--.+..+.-..... ..+-....+.+- .-. +.. .+. .+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 467899999999999999998887655544444444332211 112222222210 000 000 000 11
Q ss_pred ---HHHHHHHHc-CCceEEEEcCCCCHHH-----HHHHHHhccCCCCCceEEEEeCCc
Q 002125 286 ---IESQLNRLA-RKKFLIVFDDVTHPRQ-----IESLIRRLDRLASGSRVIITTRDK 334 (963)
Q Consensus 286 ---~~~l~~~L~-~k~~LlVLDdv~~~~~-----~~~l~~~l~~~~~gs~IivTTR~~ 334 (963)
.+..++.+. ++-=|+|||.+...-. .+++...+.....+..||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 123344444 4455999999844322 344444444446778999999976
No 334
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.25 Score=54.84 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=45.6
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccC--CceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC----CCHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHF--EGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV----WNIESQLNRL 293 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~----~~~~~l~~~L 293 (963)
-.+++++|+.|+||||++..++.+...++ ..+.++. .... ..+-.+-++.+...++-.... .++......+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~--R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSY--RIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccc--cccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence 46999999999999999999998765444 3344443 1111 112222223333332221111 2334444455
Q ss_pred cCCceEEEEcCCC
Q 002125 294 ARKKFLIVFDDVT 306 (963)
Q Consensus 294 ~~k~~LlVLDdv~ 306 (963)
.++ -+|++|..-
T Consensus 214 ~~~-DlVLIDTaG 225 (374)
T PRK14722 214 RNK-HMVLIDTIG 225 (374)
T ss_pred cCC-CEEEEcCCC
Confidence 555 456699884
No 335
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.99 E-value=0.12 Score=58.28 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=34.8
Q ss_pred CCcccchhhHHHHHHhHh-------c---CC--C----CeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 197 KDLVGVEWRIKEIESLLC-------T---GF--A----GVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~-------~---~~--~----~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
..++|.++.++.+...+. . .. + ....+.++|++|+|||++|+.++..+...|
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 446777777766654431 1 00 1 125789999999999999999997664333
No 336
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.1 Score=51.33 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=25.7
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSY 252 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 252 (963)
+.|.+.|.+|+||||+|++++..+++.-..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 45778999999999999999987766544443
No 337
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.98 E-value=0.072 Score=56.48 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.2
Q ss_pred EEEEccCCCChhhHHHHHHHHHhcc
Q 002125 223 LGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
|.+.|.+|+||||+|+++...+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999877554
No 338
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.98 E-value=0.1 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+|.|.|++|+||||+|+.++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998764
No 339
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.95 E-value=0.07 Score=56.79 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=23.4
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
+.|.|+|.+|+||||+|+++...+.+.-..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 46889999999999999999987766433344443
No 340
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=94.95 E-value=0.056 Score=49.81 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=51.2
Q ss_pred EEEcCccccccCchHHHHHHHHhhCCCceEEeC-CCCCCccchHHHHHHhhhcceeeeeeccC
Q 002125 29 VFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSER 90 (963)
Q Consensus 29 vfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~ 90 (963)
|||.|. .| ..+++.+...|+..|+.+.+=. ....|..+.+.+.+++.+++.+||+++|+
T Consensus 2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 899996 67 5788999999998898765544 66899999999999999999999999984
No 341
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.95 E-value=0.1 Score=50.05 Aligned_cols=103 Identities=19% Similarity=0.190 Sum_probs=54.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFL 299 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~L 299 (963)
-.+++|.|..|.|||||++.+..... ...+.+++.......-.+.+..-+ ...-.+...+..++-+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~lS~G~-------------~~rv~laral~~~p~i 91 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQLSGGE-------------KMRLALAKLLLENPNL 91 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEccCCHHH-------------HHHHHHHHHHhcCCCE
Confidence 35899999999999999999876432 234444443211100000000000 0011344555667789
Q ss_pred EEEcCCC---CHHHHHHHHHhccCCCCCceEEEEeCCchhhh
Q 002125 300 IVFDDVT---HPRQIESLIRRLDRLASGSRVIITTRDKQVLK 338 (963)
Q Consensus 300 lVLDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~ 338 (963)
+++|+.. |....+.+...+... +..||++|.+.....
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 9999873 333333333333222 246888887765543
No 342
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.94 E-value=0.046 Score=62.08 Aligned_cols=46 Identities=22% Similarity=0.120 Sum_probs=38.5
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
..++||++.++.+...+..+. -|.|.|++|+|||++|+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 569999999999988776443 4789999999999999999986543
No 343
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.14 Score=57.29 Aligned_cols=47 Identities=30% Similarity=0.210 Sum_probs=33.3
Q ss_pred CCcccchhhHH---HHHHhHhcC-------CCCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 197 KDLVGVEWRIK---EIESLLCTG-------FAGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 197 ~~~vGr~~~~~---~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
++.-|.|+..+ +|.++|... ..=++-|.++|++|.|||-||++++-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 45667776554 555555422 222567899999999999999999864
No 344
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.35 Score=53.71 Aligned_cols=150 Identities=17% Similarity=0.195 Sum_probs=79.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFL 299 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~L 299 (963)
-|--.++|++|.|||++..++++.+ +.-++.-.+.++.... + ++.++... ..+-+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n~---d-Lr~LL~~t-----------------~~kSI 289 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLDS---D-LRHLLLAT-----------------PNKSI 289 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCcH---H-HHHHHHhC-----------------CCCcE
Confidence 3567899999999999999998753 3333332222221111 1 22222221 34667
Q ss_pred EEEcCCCCHHH--------------------HHHHHHhccC--CCC-CceE-EEEeCCchhhhc-----CCcceEEEecc
Q 002125 300 IVFDDVTHPRQ--------------------IESLIRRLDR--LAS-GSRV-IITTRDKQVLKN-----CRARQIFRMKE 350 (963)
Q Consensus 300 lVLDdv~~~~~--------------------~~~l~~~l~~--~~~-gs~I-ivTTR~~~v~~~-----~~~~~~~~l~~ 350 (963)
||+.|++..-+ +.-|+..++. ... +-|| +.||-..+-+.. -..+..+.++-
T Consensus 290 ivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgy 369 (457)
T KOG0743|consen 290 LLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGY 369 (457)
T ss_pred EEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCC
Confidence 77888754311 2223333321 111 3455 556665433221 12345677888
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhc
Q 002125 351 LEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHL 399 (963)
Q Consensus 351 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L 399 (963)
=+.+.-..|+.++..... +. .++.+|.+...|.-+.=..++..|
T Consensus 370 Ctf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 370 CTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 888888888877763222 22 345566655556555444444444
No 345
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.0013 Score=67.10 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=28.6
Q ss_pred CCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc--ccCCCCCCCEEECcCC
Q 002125 731 FKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE--SLGQLSSVKNLVLTNN 789 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~n 789 (963)
++.|+.|.|+-|.+...-| +..++.|++|+|..|.|.++.+ -+.++++|+.|.|..|
T Consensus 40 Mp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred cccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 5555555555555444322 4445555555555555544432 2445555555555554
No 346
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.88 E-value=0.32 Score=47.90 Aligned_cols=75 Identities=9% Similarity=0.055 Sum_probs=42.2
Q ss_pred EEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC----CCHHHHHHHHcC--C
Q 002125 223 LGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV----WNIESQLNRLAR--K 296 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~----~~~~~l~~~L~~--k 296 (963)
+.|.|.+|.|||++|.+++.. ....+.++... ...+ .++++.+.......... +....+.+.+.. +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~----~~~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA----EAFD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc----CcCC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 678999999999999998765 33456666522 1222 23444433332222222 222345555532 2
Q ss_pred ceEEEEcCC
Q 002125 297 KFLIVFDDV 305 (963)
Q Consensus 297 ~~LlVLDdv 305 (963)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347899986
No 347
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.84 E-value=0.061 Score=60.91 Aligned_cols=50 Identities=20% Similarity=0.174 Sum_probs=34.4
Q ss_pred CcccchhhHHHHHHhHh-------cC-----C--CCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 198 DLVGVEWRIKEIESLLC-------TG-----F--AGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 198 ~~vGr~~~~~~l~~~L~-------~~-----~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
.+||.+..++.+...+. .. . -....+.++|++|+|||++|+.++..+...
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVP 135 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 47788777776644431 00 0 113568899999999999999998766433
No 348
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.84 E-value=0.031 Score=56.40 Aligned_cols=30 Identities=37% Similarity=0.518 Sum_probs=26.8
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
+.+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 457899999999999999999999988755
No 349
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.79 E-value=0.024 Score=46.53 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+|+|.|..|+||||+|+.+.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 350
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.78 E-value=0.27 Score=61.48 Aligned_cols=223 Identities=20% Similarity=0.181 Sum_probs=108.7
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhccC----CceEEEEecchhhccCCHH--HHHHHHHHhhhcCCCC-CCHHHHHHHHc
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRHF----EGSYFAQNVREAEETGGIK--DLQKELLSKLLNDRNV-WNIESQLNRLA 294 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~~~~~~~~~~~~~--~l~~~ll~~l~~~~~~-~~~~~l~~~L~ 294 (963)
-+.|+|.+|.||||+...++-...... +..+++..-.......... .+..-+...+...... .......+.+.
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~l~ 303 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQELLK 303 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHHHh
Confidence 688999999999999999886443322 2223332110000011111 2222222222222222 22334467888
Q ss_pred CCceEEEEcCCCCHHH------HHHHHHhccCCCCCceEEEEeCCchhhhcCCcceEEEeccCCHHHHHHHHH-------
Q 002125 295 RKKFLIVFDDVTHPRQ------IESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMKELEDADAHKLFC------- 361 (963)
Q Consensus 295 ~k~~LlVLDdv~~~~~------~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~------- 361 (963)
..++++.+|.++.... ...+-...++ -+.+++|+|+|....-........+++..+.++.-.+...
T Consensus 304 ~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~~~ 382 (824)
T COG5635 304 TGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLDAF 382 (824)
T ss_pred ccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHHHH
Confidence 9999999999876542 2222222222 3588999999977554333334455566655554443222
Q ss_pred -HhhcCCCCCC-CcHH-HH---HHHHHHHhcCCchhHHHhhhhcC------CCCHHHHHHHHHHhhcCCChhHHHHHHHH
Q 002125 362 -QCAFGGDHPD-ASHI-EL---TDKAIKYAQGVPLALKVLGHHLC------GRSKEEWESAMRKLEVIPDKEIQEVLKIS 429 (963)
Q Consensus 362 -~~a~~~~~~~-~~~~-~~---~~~i~~~~~g~PLal~~l~~~L~------~~~~~~w~~~l~~l~~~~~~~i~~~l~~s 429 (963)
...++..... ..+. .+ ..+-.+.....|+.|.+.+..-. ....+-++.+++.+-...+..-.......
T Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~~~~~~~~~ 462 (824)
T COG5635 383 IEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDETRGIKWSKT 462 (824)
T ss_pred HHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchhhhhcchhh
Confidence 1112211111 0010 00 12223344778888887763332 23456677776665443332222223344
Q ss_pred hhCCChh-hHH-HHHhhh
Q 002125 430 YDSLDDP-QKN-VFLDIA 445 (963)
Q Consensus 430 y~~L~~~-~k~-~fl~la 445 (963)
|+.+... ... .+..++
T Consensus 463 ~~~~~~~~~~~~l~~~la 480 (824)
T COG5635 463 YAKLTTDQQDKWLLQLLA 480 (824)
T ss_pred hcccchHHHHHHHHHHHH
Confidence 5555432 233 444444
No 351
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.78 E-value=0.068 Score=62.16 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=47.4
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH--cC
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRL--AR 295 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L--~~ 295 (963)
...++..++|++|+||||||.-+++.. .|..+ =+ + +|+......+-+.+...+.... .+ ..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa--GYsVv-EI-N---ASDeRt~~~v~~kI~~avq~~s----------~l~ads 386 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA--GYSVV-EI-N---ASDERTAPMVKEKIENAVQNHS----------VLDADS 386 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc--CceEE-Ee-c---ccccccHHHHHHHHHHHHhhcc----------ccccCC
Confidence 456899999999999999999988742 23211 11 1 3444445555555544443321 12 25
Q ss_pred CceEEEEcCCCCHH
Q 002125 296 KKFLIVFDDVTHPR 309 (963)
Q Consensus 296 k~~LlVLDdv~~~~ 309 (963)
++.-||+|.++...
T Consensus 387 rP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 387 RPVCLVIDEIDGAP 400 (877)
T ss_pred CcceEEEecccCCc
Confidence 78889999997643
No 352
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.77 E-value=0.012 Score=53.85 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEccCCCChhhHHHHHHHHHhccCCce
Q 002125 223 LGIWGIGGIGKTTIADAVFNKISRHFEGS 251 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 251 (963)
|.|+|.+|+|||++|+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999887777543
No 353
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.75 E-value=0.11 Score=56.70 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=28.1
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
+..+++++|++|+||||++..++..+...-..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 468999999999999999999998776543333333
No 354
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=0.2 Score=50.30 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=57.5
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhcc---C-CceEEEEecch-hhc-cCCHHHHHHHHHHhhhcCCCCCCHH-HHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRH---F-EGSYFAQNVRE-AEE-TGGIKDLQKELLSKLLNDRNVWNIE-SQLNR 292 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~---f-~~~~~~~~~~~-~~~-~~~~~~l~~~ll~~l~~~~~~~~~~-~l~~~ 292 (963)
..-..|.|++|+|||||.+.+++-++.. | +..+-+.+.+. ... ..+.. +.++...+.-.+.....+ ++...
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvp--q~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVP--QHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCc--hhhhhhhhhhcccchHHHHHHHHH
Confidence 3446789999999999999998865443 3 22222222211 110 00111 111111111111111111 22222
Q ss_pred HcCCceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeC
Q 002125 293 LARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTR 332 (963)
Q Consensus 293 L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR 332 (963)
-...+=++|.|.+-..++..++...+ ..|-+++.|..
T Consensus 215 rsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaH 251 (308)
T COG3854 215 RSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAH 251 (308)
T ss_pred HhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeec
Confidence 23467899999999888877776654 46777776654
No 355
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.73 E-value=0.18 Score=49.08 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=27.0
Q ss_pred cchhhHHHHHHhHhcC-CCCeEEEEEEccCCCChhhHHHHHHH
Q 002125 201 GVEWRIKEIESLLCTG-FAGVYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 201 Gr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
|.+.-++.+.+++... ......|+++|++|+|||||...+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 4444444444443211 12235678999999999999999875
No 356
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.71 E-value=0.028 Score=57.81 Aligned_cols=27 Identities=37% Similarity=0.637 Sum_probs=24.3
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999876
No 357
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.3 Score=50.77 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHhHh----------cCCCCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 197 KDLVGVEWRIKEIESLLC----------TGFAGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+.+.|.+...+.|.+... ......+-|.++|++|.||+-||++|+....
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 567888888888877554 1223467899999999999999999997643
No 358
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.70 E-value=0.041 Score=51.38 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=28.4
Q ss_pred hHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 205 RIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 205 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+.+++.+.|...-..-.+|.+.|.-|.||||+++.++..+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444443222334589999999999999999999864
No 359
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.70 E-value=0.59 Score=56.98 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=37.3
Q ss_pred CCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 196 NKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
.+.++|....++++.+.+..-......|.|+|..|+||+++|+.+.+.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 467899998888887776632223334789999999999999999874
No 360
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.015 Score=35.61 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=7.8
Q ss_pred ccEEEcCCCCCcccCccc
Q 002125 758 LETLIIDGTAMREVPESL 775 (963)
Q Consensus 758 L~~L~L~~n~l~~lp~~l 775 (963)
|++|+|++|+++.+|.+|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 344444444444444433
No 361
>PRK04040 adenylate kinase; Provisional
Probab=94.68 E-value=0.03 Score=56.32 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=23.0
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.+|+|+|++|+||||+++.+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 362
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.22 Score=58.09 Aligned_cols=173 Identities=19% Similarity=0.172 Sum_probs=91.8
Q ss_pred cCCCcccchhhHHHHHHhHh---c-------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCc---eEEEEecchhh
Q 002125 195 YNKDLVGVEWRIKEIESLLC---T-------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEG---SYFAQNVREAE 261 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~~~~~~~ 261 (963)
...+..|.|+..+++.+.++ . +..-++-|.++|++|.|||.||++++....-.|-. .-|+...-
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV--- 224 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV--- 224 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc---
Confidence 34567888887777666655 1 11225678999999999999999998754333311 11111000
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----------------HHHHHHHHhccCCCCCc
Q 002125 262 ETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------------RQIESLIRRLDRLASGS 325 (963)
Q Consensus 262 ~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~~~gs 325 (963)
.-+. +-.+ +...+..++-++.|++|.++.. ..+.+++...+.++.+.
T Consensus 225 -GvGA-sRVR---------------dLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 225 -GVGA-SRVR---------------DLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred -CCCc-HHHH---------------HHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 0000 1111 1223334456889999977532 12556666666666333
Q ss_pred eE--EEEeCCchhh-----hcCCcceEEEeccCCHHHHHHHHHHhhcCCCC-CCCcHHHHHHHHHHHhcCCchh
Q 002125 326 RV--IITTRDKQVL-----KNCRARQIFRMKELEDADAHKLFCQCAFGGDH-PDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 326 ~I--ivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~PLa 391 (963)
-| +..|--..|+ ..-.-++.+.++..+...-.+.++-++-.... +..++ ..|++.+-|.-.|
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcccc
Confidence 23 3233323333 12234556677777767777777766532221 12222 2266666665443
No 363
>PRK08233 hypothetical protein; Provisional
Probab=94.66 E-value=0.024 Score=56.77 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999987653
No 364
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.61 E-value=0.16 Score=50.81 Aligned_cols=115 Identities=20% Similarity=0.244 Sum_probs=60.3
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHH------HHHHHHHhhhcCC----CCCCH---
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKD------LQKELLSKLLNDR----NVWNI--- 286 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~------l~~~ll~~l~~~~----~~~~~--- 286 (963)
-.+++|.|..|.|||||++.++.... ...+.+++... ... ...... ...+++..+.-.. ....+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~-~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGK-DLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-ECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 35899999999999999999876432 23455555321 111 001111 1111233322111 01111
Q ss_pred ----HHHHHHHcCCceEEEEcCCC---CHHHHHHHHHhccCC-CC-CceEEEEeCCchhh
Q 002125 287 ----ESQLNRLARKKFLIVFDDVT---HPRQIESLIRRLDRL-AS-GSRVIITTRDKQVL 337 (963)
Q Consensus 287 ----~~l~~~L~~k~~LlVLDdv~---~~~~~~~l~~~l~~~-~~-gs~IivTTR~~~v~ 337 (963)
-.+...+...+-++++|+.. |.+..+.+...+... .. +..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 14555667788899999873 233333333322211 22 66788888876554
No 365
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.57 E-value=0.0031 Score=74.19 Aligned_cols=36 Identities=28% Similarity=0.590 Sum_probs=23.8
Q ss_pred CCCCcEEeecCCCCccc--cccccCCCCCccEEeCcCC
Q 002125 576 LSNLKKLYIVDCSKLES--ISSSIFKLKSLQSIEISNC 611 (963)
Q Consensus 576 L~~L~~L~L~~~~~~~~--lp~~~~~L~~L~~L~Ls~n 611 (963)
.++|+.|.+.+|..+.. +-.....+++|+.|+++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 56677777777665554 3234556778888888764
No 366
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.57 E-value=0.097 Score=54.10 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=29.6
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
.++.+.+.....+..+|+|+|.||+|||||..++...+.++
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444444444567899999999999999999998877654
No 367
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.55 E-value=0.018 Score=35.18 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=13.0
Q ss_pred CCcEEEecCccccccCccccC
Q 002125 683 ALEMLIVDGTAIREVPKSLNQ 703 (963)
Q Consensus 683 ~L~~L~L~~n~l~~lp~~~~~ 703 (963)
+|++|++++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 368
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.55 E-value=0.24 Score=48.81 Aligned_cols=122 Identities=18% Similarity=0.137 Sum_probs=60.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEe---cchhhccCCH--HHHHHHHHHhhhcCCCCCC----HHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN---VREAEETGGI--KDLQKELLSKLLNDRNVWN----IESQL 290 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~---~~~~~~~~~~--~~l~~~ll~~l~~~~~~~~----~~~l~ 290 (963)
-.+++|.|..|.|||||++.++..... ..+.+++.. +.-..+...+ ..+.+.+... ....-.. .-.+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~--~~~~LS~G~~~rv~la 103 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP--WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc--CCCCCCHHHHHHHHHH
Confidence 358999999999999999999864322 222232211 0001111111 1222222110 1111111 11455
Q ss_pred HHHcCCceEEEEcCCC---CHHHHHHHHHhccCCCCCceEEEEeCCchhhhcCCcceEEEe
Q 002125 291 NRLARKKFLIVFDDVT---HPRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRM 348 (963)
Q Consensus 291 ~~L~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 348 (963)
+.+..++=++++|+-. |....+.+...+... +..||++|.+..... ..++++.+
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 6666788889999863 223333333333222 356788887766543 23455544
No 369
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.15 Score=53.53 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=26.4
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
..+..++|||++|.|||-+|+.|+..+.-.|
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 3467899999999999999999998775554
No 370
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.54 E-value=0.15 Score=50.84 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=61.2
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHH--------------HHHHhhhcCCCC--C
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQK--------------ELLSKLLNDRNV--W 284 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~--------------~ll~~l~~~~~~--~ 284 (963)
.+++|.|..|.|||||++.++.... ...+.+++... ..... .....+ .+...+...-.. .
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~~--~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGV-PVSDL--EKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCE-EHHHH--HHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 5799999999999999999986432 22334444311 00000 000000 000000000000 0
Q ss_pred CHHHHHHHHcCCceEEEEcCCCC---HHHHHHHHHhccCCCCCceEEEEeCCchhhhcCCcceEEEec
Q 002125 285 NIESQLNRLARKKFLIVFDDVTH---PRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMK 349 (963)
Q Consensus 285 ~~~~l~~~L~~k~~LlVLDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~ 349 (963)
..-.+...+..++=++++|+... ....+.+...+.....+..||++|.+...... .++++.+.
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 01144555667888999998742 22223333222222246778888888776642 34555543
No 371
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=1 Score=53.09 Aligned_cols=143 Identities=27% Similarity=0.337 Sum_probs=78.5
Q ss_pred CCcccchhhHHHHHHhHhc----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCH
Q 002125 197 KDLVGVEWRIKEIESLLCT----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGI 266 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 266 (963)
+++=|.++-..+|.+-+.. +-.+..=|.++|++|.|||-+|++|+....-.| ++ + .+.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-V------KGP 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS-V------KGP 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-e------cCH
Confidence 4455667666777766552 222244688999999999999999998654333 32 1 111
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHc-CCceEEEEcCCCCH---------------HHHHHHHHhccCCCC----Cce
Q 002125 267 KDLQKELLSKLLNDRNVWNIESQLNRLA-RKKFLIVFDDVTHP---------------RQIESLIRRLDRLAS----GSR 326 (963)
Q Consensus 267 ~~l~~~ll~~l~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~~---------------~~~~~l~~~l~~~~~----gs~ 326 (963)
+ ++..-.++. ..++..+.++.+ .++++|.+|.+++. ..+.+++..++..+. +-=
T Consensus 740 -E----LLNMYVGqS-E~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VF 813 (953)
T KOG0736|consen 740 -E----LLNMYVGQS-EENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVF 813 (953)
T ss_pred -H----HHHHHhcch-HHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceE
Confidence 1 111111111 133444444444 58999999998763 235556655554432 222
Q ss_pred EEEEeCCchh-----hhcCCcceEEEeccCCHHHHH
Q 002125 327 VIITTRDKQV-----LKNCRARQIFRMKELEDADAH 357 (963)
Q Consensus 327 IivTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~ 357 (963)
||=.|-.+.. +..-..++.+.|++=+.+|+.
T Consensus 814 ViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk 849 (953)
T KOG0736|consen 814 VIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESK 849 (953)
T ss_pred EEecCCCccccChhhcCCCccceeEEecCCccHHHH
Confidence 3433332222 222234566777776666554
No 372
>PRK03839 putative kinase; Provisional
Probab=94.45 E-value=0.029 Score=56.21 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 373
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.43 E-value=0.16 Score=50.37 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=25.7
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
++.+.|++|+||||++..++..+.+.-..+..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 578999999999999999998776653334444
No 374
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.41 E-value=0.04 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.6
Q ss_pred EEEEccCCCChhhHHHHHHHHH
Q 002125 223 LGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~ 244 (963)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 375
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.41 E-value=0.33 Score=52.21 Aligned_cols=37 Identities=14% Similarity=-0.066 Sum_probs=29.1
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQ 255 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 255 (963)
.-.++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 34588899999999999999998876544 45566765
No 376
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.41 E-value=1.1 Score=51.69 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=46.9
Q ss_pred cccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh-ccCCceEEEEecchhhccCCHHHHHHHHHHhh
Q 002125 199 LVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQNVREAEETGGIKDLQKELLSKL 277 (963)
Q Consensus 199 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 277 (963)
..|...-...|.+++. +-..-.++.|.|.+|+|||++|..++..+. .+-..++|++ -.-....+...++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHH
Confidence 4555555666666654 444456889999999999999999997654 3333455554 1234455666665544
Q ss_pred h
Q 002125 278 L 278 (963)
Q Consensus 278 ~ 278 (963)
.
T Consensus 247 ~ 247 (421)
T TIGR03600 247 S 247 (421)
T ss_pred c
Confidence 3
No 377
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.23 Score=49.16 Aligned_cols=123 Identities=20% Similarity=0.315 Sum_probs=61.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCC----------C----CC
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRN----------V----WN 285 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----------~----~~ 285 (963)
-.+++|.|..|.|||||.+.++.... ...+.+++... .... ......... ..-+..... - ..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~-~~~~-~~~~~~~~~-i~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGV-DLRD-LDLESLRKN-IAYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCE-Ehhh-cCHHHHHhh-EEEEcCCchhccchHHHHhhCHHHHH
Confidence 35899999999999999999987432 23444444321 0000 000000000 000000000 0 00
Q ss_pred HHHHHHHHcCCceEEEEcCCCC---HHHHHHHHHhccCCCCCceEEEEeCCchhhhcCCcceEEEe
Q 002125 286 IESQLNRLARKKFLIVFDDVTH---PRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRM 348 (963)
Q Consensus 286 ~~~l~~~L~~k~~LlVLDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 348 (963)
.-.+...+..++-+++||+-.. ....+.+...+.....+..||++|.+...... .++++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 0134555667888999998732 22223333222222235678888888766643 4455544
No 378
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.37 E-value=0.11 Score=55.56 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=37.5
Q ss_pred HhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 211 SLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 211 ~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
+++..+-+.-+++.|+|.+|+|||++|.++..+...+...++|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344444466789999999999999999999998888888899986
No 379
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.36 E-value=0.056 Score=53.82 Aligned_cols=36 Identities=28% Similarity=0.184 Sum_probs=27.6
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
...+|+|.|.+|+||||+|+.++..+...-....++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 346899999999999999999998775433234444
No 380
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.36 E-value=0.13 Score=55.03 Aligned_cols=57 Identities=23% Similarity=0.180 Sum_probs=44.8
Q ss_pred ccCCCcccchhhHHH---HHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCc
Q 002125 194 SYNKDLVGVEWRIKE---IESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEG 250 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 250 (963)
.....+||..+..+. +.+++..+.-.-+.|.|.|++|.|||+||..+++.+...-+.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 456889998877664 566666554456889999999999999999999988765443
No 381
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=0.0022 Score=65.51 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=65.6
Q ss_pred CCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcE
Q 002125 657 FKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTS 736 (963)
Q Consensus 657 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~ 736 (963)
+.+.+.|+..+|.+... .....|+.|+.|.|+-|.|+.+- .+..+++|+.|.|..|. +..+. .+.-+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sld-EL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLD-ELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHH-HHHHHhcCchhhh
Confidence 45566777777765432 23456778888888888888763 36778888888888773 33332 2334566788888
Q ss_pred EEccCCCCCCcCcc-----ccCCCCCccEEE
Q 002125 737 LEIIDCQNFMILPD-----ELGNLKALETLI 762 (963)
Q Consensus 737 L~l~~~~~~~~~p~-----~l~~l~~L~~L~ 762 (963)
|.|..|.-.+.-+. .+.-|++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88877765554332 245567777765
No 382
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.34 E-value=0.041 Score=59.21 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=70.5
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHh
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSK 276 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 276 (963)
+.+.-.....+++.++|...-.....|.|.|..|.||||++..+...+...-..++-+.+..+..-.. .. ...
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~-~~------~~~ 176 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPG-PN------QIQ 176 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SC-SS------EEE
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecc-cc------eEE
Confidence 34444444456666666543234578999999999999999999987665523334444322211100 00 000
Q ss_pred hhcCCCC-CCHHHHHHHHcCCceEEEEcCCCCHHHHHHHHHhccCCCCCceE-EEEeCCc
Q 002125 277 LLNDRNV-WNIESQLNRLARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRV-IITTRDK 334 (963)
Q Consensus 277 l~~~~~~-~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~I-ivTTR~~ 334 (963)
+...... .-.+.+...|+..+=.|+++.+.+.+.++.+... ..|..+ +-|....
T Consensus 177 ~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 177 IQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp EEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred EEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 0000111 2234677778888889999999998887774433 356677 5555433
No 383
>PRK08506 replicative DNA helicase; Provisional
Probab=94.32 E-value=0.76 Score=53.42 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=47.4
Q ss_pred cccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhh
Q 002125 199 LVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLL 278 (963)
Q Consensus 199 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 278 (963)
..|...-...|.+++ .+-..-.++.|-|.+|+|||++|..++.....+-..++|++ -.-...++...+++...
T Consensus 172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS------lEMs~~ql~~Rlla~~s 244 (472)
T PRK08506 172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS------LEMPAEQLMLRMLSAKT 244 (472)
T ss_pred CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe------CcCCHHHHHHHHHHHhc
Confidence 455566666666655 34444568899999999999999999887654433455553 22344566666665443
No 384
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.32 E-value=0.093 Score=52.09 Aligned_cols=93 Identities=23% Similarity=0.215 Sum_probs=47.4
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh-ccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC-CC--HHHHHHHHcCC-
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV-WN--IESQLNRLARK- 296 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~--~~~l~~~L~~k- 296 (963)
.|.|.|.+|.||||+|+.+.+++. -|.+..-|+.. ..... ..+...+-.-+....-. +. ...+..++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~---~~~~~--t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d 76 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRA---AIAER--TELGEEIKKYIDKGELVPDEIVNGLVKERLDEAD 76 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHh---hhccC--ChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhc
Confidence 378999999999999999998731 12222222211 01011 22222222223222212 11 23555555432
Q ss_pred -ceEEEEcCC-CCHHHHHHHHHhcc
Q 002125 297 -KFLIVFDDV-THPRQIESLIRRLD 319 (963)
Q Consensus 297 -~~LlVLDdv-~~~~~~~~l~~~l~ 319 (963)
+--+|+|+. ....+++.+...+.
T Consensus 77 ~~~~~I~dg~PR~~~qa~~l~r~l~ 101 (178)
T COG0563 77 CKAGFILDGFPRTLCQARALKRLLK 101 (178)
T ss_pred ccCeEEEeCCCCcHHHHHHHHHHHH
Confidence 227888888 44556666655443
No 385
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.27 E-value=0.046 Score=56.15 Aligned_cols=28 Identities=36% Similarity=0.587 Sum_probs=24.3
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+...+|+|.|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999987654
No 386
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.26 E-value=0.11 Score=51.02 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=57.6
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC----CCHHHHHHHHcCC
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV----WNIESQLNRLARK 296 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~----~~~~~l~~~L~~k 296 (963)
.+++|.|..|.|||||.+.++.... ...+.+++... ... ........+ ..+.-...- ...-.+...+..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~-~~~~~~~~~---~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVS-FASPRDARR---AGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECC-cCCHHHHHh---cCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999876432 23445555321 111 001111100 001000000 0111445556677
Q ss_pred ceEEEEcCCC---CHHHHHHHHHhccCC-CCCceEEEEeCCchhhh
Q 002125 297 KFLIVFDDVT---HPRQIESLIRRLDRL-ASGSRVIITTRDKQVLK 338 (963)
Q Consensus 297 ~~LlVLDdv~---~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~ 338 (963)
+-++++|+.. |....+.+...+... ..|..||++|.+...+.
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 8899999873 233223333222211 24677888888876443
No 387
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.26 E-value=0.045 Score=55.08 Aligned_cols=93 Identities=18% Similarity=0.103 Sum_probs=51.1
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhc--CCCC-CCHHHHHHHHcCC
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLN--DRNV-WNIESQLNRLARK 296 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~--~~~~-~~~~~l~~~L~~k 296 (963)
-..++|.|..|.||||+++.+...+... ...+.+.+..+...... ..+ ++...-.. .... ...+.++..++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~~lR~~ 100 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP-NWV--RLVTRPGNVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC-CEE--EEEEecCCCCCCCccCHHHHHHHHhccC
Confidence 3579999999999999999988765432 23333332221110000 000 00000000 0001 1224566677888
Q ss_pred ceEEEEcCCCCHHHHHHHHH
Q 002125 297 KFLIVFDDVTHPRQIESLIR 316 (963)
Q Consensus 297 ~~LlVLDdv~~~~~~~~l~~ 316 (963)
+=.++++.+.+.+.++.+..
T Consensus 101 pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 101 PDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred CCEEEEEccCcHHHHHHHHH
Confidence 88999999999887654443
No 388
>PRK06217 hypothetical protein; Validated
Probab=94.25 E-value=0.16 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.|.|.|.+|.||||+|+++..++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 389
>PRK00625 shikimate kinase; Provisional
Probab=94.24 E-value=0.033 Score=55.04 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.2
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.|.|+||+|+||||+|+.++.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988763
No 390
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=94.20 E-value=0.64 Score=50.90 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=31.8
Q ss_pred eEEEeccCCHHHHHHHHHHhhc----CCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhh
Q 002125 344 QIFRMKELEDADAHKLFCQCAF----GGDHPDASHIELTDKAIKYAQGVPLALKVLGHH 398 (963)
Q Consensus 344 ~~~~l~~L~~~ea~~Lf~~~a~----~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~ 398 (963)
.+++++..+.+|+.++..-+.- ....+. ++.-+++.-..+|+|--++-++..
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~ 459 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAF 459 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHh
Confidence 4688999999999887654431 111121 234566667778888555555444
No 391
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.20 E-value=0.22 Score=53.04 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=63.6
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCC-----CC----CCHHHH
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDR-----NV----WNIESQ 289 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-----~~----~~~~~l 289 (963)
+.+-++|.|..|.|||||.+.++..+... .+.+++.. ..+.......++...+ ..+.... +. ...+.+
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeecchhHHHHHHHh-cccccccccccccccccchHHHHH
Confidence 45789999999999999999998765433 23333321 0110000111221110 0010000 00 111223
Q ss_pred HHHHc-CCceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchh
Q 002125 290 LNRLA-RKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQV 336 (963)
Q Consensus 290 ~~~L~-~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 336 (963)
...++ ..+=++++|.+...+.+..+...+. .|..||+||-+..+
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 33333 5788999999988887777776653 57889999987655
No 392
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.073 Score=51.25 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=30.6
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
+...+|.++|.+|.||||+|.++..++..+.-.+..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 4567999999999999999999999887776555444
No 393
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.13 E-value=0.056 Score=60.10 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=37.9
Q ss_pred CCcccchhhHHHHHHhHhcC------------CCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 197 KDLVGVEWRIKEIESLLCTG------------FAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
.++||.++.++.+...+... ....+-|.++|++|+|||++|+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45788888777775544421 11246789999999999999999998765444
No 394
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.11 E-value=0.082 Score=52.19 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=30.3
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh-ccCCceEEEEecchhh
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQNVREAE 261 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~ 261 (963)
..++.+.|+.|+|||.||+.+++.+. ......+-+ +..+.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~-d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI-DMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE-EGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH-hhhccc
Confidence 45788999999999999999999877 455554444 343433
No 395
>PRK06547 hypothetical protein; Provisional
Probab=94.08 E-value=0.047 Score=53.97 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
....+|+|.|.+|+||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998863
No 396
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.08 E-value=0.039 Score=54.83 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
...|.|+|++|+||||+|+.++.++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 397
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.07 E-value=0.22 Score=49.44 Aligned_cols=120 Identities=19% Similarity=0.258 Sum_probs=60.7
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCC----------C----CCH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRN----------V----WNI 286 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----------~----~~~ 286 (963)
.+++|.|..|.|||||.+.++.... ...+.+++... ... ..........+ ..+..... - ...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DIS-QWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Ecc-cCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHHH
Confidence 5899999999999999999986432 23344444211 000 00111111100 00000000 0 001
Q ss_pred HHHHHHHcCCceEEEEcCCC---CHHH---HHHHHHhccCCCCCceEEEEeCCchhhhcCCcceEEEe
Q 002125 287 ESQLNRLARKKFLIVFDDVT---HPRQ---IESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRM 348 (963)
Q Consensus 287 ~~l~~~L~~k~~LlVLDdv~---~~~~---~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l 348 (963)
-.+...+..++-++++|+.. |... +..++..+. ..|..||++|.+..... . .++++.+
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 14445566777899999873 2222 323333322 23667888888876654 2 4455554
No 398
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.06 E-value=0.58 Score=49.20 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+..|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999987654
No 399
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.06 E-value=0.074 Score=57.69 Aligned_cols=59 Identities=22% Similarity=0.183 Sum_probs=41.5
Q ss_pred cCCCcccchhhHHHH---HHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEE
Q 002125 195 YNKDLVGVEWRIKEI---ESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYF 253 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 253 (963)
...++||..+..+.. .+++..+.-.-+.|.|.|++|.|||+||..++..+....+.+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 457899998877763 55555443345889999999999999999999998877765443
No 400
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=94.05 E-value=0.16 Score=56.58 Aligned_cols=178 Identities=19% Similarity=0.279 Sum_probs=95.9
Q ss_pred HHHHHHHHhhCCCceEEe--------C-CCCCCccchHHHHHHhhhcceeeeeeccCccchhhhHHHHHHHHHhh-hcCC
Q 002125 43 TSHLYSALCHNNIETFID--------N-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDELSKILECK-HDYG 112 (963)
Q Consensus 43 ~~~l~~~L~~~g~~~~~d--------~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~~El~~~~~~~-~~~~ 112 (963)
.+.|..-.+..|+.|.-- + ..--|..-.++|.+.+++..+-+||+-..-..+. ...|.+++.++ -...
T Consensus 19 ~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p~q--~~nl~~~~~~~v~Dr~ 96 (351)
T TIGR03156 19 LEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHELSPSQ--ERNLEKALGCRVIDRT 96 (351)
T ss_pred HHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCCCHHH--HHHHHHHhCCcccchH
Confidence 455655556778876431 1 3445666678999999988888888876543333 34555555544 1122
Q ss_pred cEEEeEeeeccCcccccccccchhhHhhhcCCchhhhhhHHHHHHHhccccCCCCCCCchhhHHHHHHHHHHHhhhcccc
Q 002125 113 QIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRYPEKMHRWANALTEAANLSGFDSDVIRPESKLVEEIANEILERLEETF 192 (963)
Q Consensus 113 ~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~~~v~~~l~~~~ 192 (963)
+.|+-||- .+-+...+..--++++....+...+..|+. |......-|++. ..|... +.-.+.+.+++..
T Consensus 97 ~lil~iF~----~ra~t~e~klqv~la~l~~~l~r~~~~~~~-l~~~~~~i~~~g---~gE~~~-~~~~~~i~~ri~~-- 165 (351)
T TIGR03156 97 GLILDIFA----QRARTHEGKLQVELAQLKYLLPRLVGGWTH-LSRQGGGIGTRG---PGETQL-ETDRRLIRERIAQ-- 165 (351)
T ss_pred HHHHHHHH----HhccChHHHHHHHHHhccchhhhhhhhHHH-HHhhcCCCCCCC---CChhHH-HHHHHHHHHHHHH--
Confidence 23455551 122333455556666666666677778877 655443323321 122211 1111222222111
Q ss_pred cccCCCcccchhhHHHHHHhHh-----cCCCCeEEEEEEccCCCChhhHHHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLC-----TGFAGVYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
..++++++.+--. ....+...|+|+|.+++|||||...+..
T Consensus 166 ---------l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~ 211 (351)
T TIGR03156 166 ---------LKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTG 211 (351)
T ss_pred ---------HHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhC
Confidence 1122222221111 1113446799999999999999998876
No 401
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.03 E-value=0.06 Score=53.74 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=22.9
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
+|+|.|.+|+||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877544
No 402
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=1.3 Score=51.92 Aligned_cols=173 Identities=19% Similarity=0.221 Sum_probs=92.2
Q ss_pred CCcccchhhHHHHHHhHhcCC-----------CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCC
Q 002125 197 KDLVGVEWRIKEIESLLCTGF-----------AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGG 265 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 265 (963)
.++-|+.+..+.+++.+.-.. .-..-|.++|++|+|||-||.+++....-+ |+. + .+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-v------KG 734 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-V------KG 734 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-e------cC
Confidence 345666666777777665322 112348899999999999999988643222 232 2 11
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHH-HcCCceEEEEcCCCCH-------------HHHHHHHHhccCC--CCCceEE-
Q 002125 266 IKDLQKELLSKLLNDRNVWNIESQLNR-LARKKFLIVFDDVTHP-------------RQIESLIRRLDRL--ASGSRVI- 328 (963)
Q Consensus 266 ~~~l~~~ll~~l~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~--~~gs~Ii- 328 (963)
. + ++.+-.+... +++..+.++ -.-+++.+.+|..+.. ..+..++..++.. -.|--|+
T Consensus 735 P-E----lL~KyIGaSE-q~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~a 808 (952)
T KOG0735|consen 735 P-E----LLSKYIGASE-QNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILA 808 (952)
T ss_pred H-H----HHHHHhcccH-HHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEE
Confidence 1 1 2222222111 223333333 3468999999998653 2366666665422 1344454
Q ss_pred EEeCCchh----hhcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch
Q 002125 329 ITTRDKQV----LKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 329 vTTR~~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
.|||..-+ +..-..++.+.-+.-++.|-+++|...+-....+. .-..+.++.+.+|..-
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTG 871 (952)
T ss_pred ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCch
Confidence 46665422 22222344444555667777777766552111111 1124566666666653
No 403
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.98 E-value=3.8 Score=45.66 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.9
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
.+.+|..+|.-|.||||.|-.+++.++.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 4678999999999999999999987766
No 404
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.96 E-value=0.045 Score=55.13 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=23.1
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+.++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998764
No 405
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.95 E-value=4 Score=44.63 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=33.9
Q ss_pred EEEeccCCHHHHHHHHHHhhcCCCCCC-CcHHHHHHHHHHHhcCCchhH
Q 002125 345 IFRMKELEDADAHKLFCQCAFGGDHPD-ASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~g~PLal 392 (963)
+++|++++.+|+..++.-++-.+--.. ...+...+++....+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987764333222 333445666666679999654
No 406
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.95 E-value=0.069 Score=58.43 Aligned_cols=108 Identities=17% Similarity=0.076 Sum_probs=59.0
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccC-CHHHHHHHHHHhhhcCCCC-CCHHHHHHHHcCCc
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETG-GIKDLQKELLSKLLNDRNV-WNIESQLNRLARKK 297 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~-~~~~l~~~ll~~l~~~~~~-~~~~~l~~~L~~k~ 297 (963)
...++|.|..|.||||+++.+...+.... ..+.+.+..+..... +...+.. ......... ...+.+...++..+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l~~---~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHLFY---SKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEEEe---cCCCCCcCccCHHHHHHHHhcCCC
Confidence 36899999999999999999887654332 333444333321111 0000000 000000111 22346667788888
Q ss_pred eEEEEcCCCCHHHHHHHHHhccCCCCCce-EEEEeCCch
Q 002125 298 FLIVFDDVTHPRQIESLIRRLDRLASGSR-VIITTRDKQ 335 (963)
Q Consensus 298 ~LlVLDdv~~~~~~~~l~~~l~~~~~gs~-IivTTR~~~ 335 (963)
=.||+|.+...+.++.+. ... .|.. ++.|+....
T Consensus 220 d~ii~gE~r~~e~~~~l~-a~~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 220 DRIILGELRGDEAFDFIR-AVN---TGHPGSITTLHAGS 254 (308)
T ss_pred CeEEEeccCCHHHHHHHH-HHh---cCCCeEEEEEeCCC
Confidence 899999999877665433 322 2332 466665443
No 407
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.92 E-value=0.083 Score=53.79 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=29.5
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
....+|+|+|.+|+||||||+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 45679999999999999999999987754433445553
No 408
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.88 E-value=0.58 Score=49.28 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=85.9
Q ss_pred ccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHH
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQK 271 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 271 (963)
++...+.|+|-..- +++..++......-+.+.++|+.|+|||+-++.+++. .+..+.+. .+..+....++.
T Consensus 67 ~~~~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s----~p~~~l~~----~~p~~~a~~~i~ 137 (297)
T COG2842 67 LEKLAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS----NPNALLIE----ADPSYTALVLIL 137 (297)
T ss_pred cccccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc----Cccceeec----CChhhHHHHHHH
Confidence 34456778876653 2333344322223348889999999999999998764 23333332 233344444444
Q ss_pred HHHHhhhcCCCC---CCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCchhhhcCCcceEE
Q 002125 272 ELLSKLLNDRNV---WNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIF 346 (963)
Q Consensus 272 ~ll~~l~~~~~~---~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~ 346 (963)
.+.......... +..+.+..++++..-+++.|+.+.. ..++.+.......+-+-..+=+-| ..
T Consensus 138 ~i~~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~pr------------L~ 205 (297)
T COG2842 138 IICAAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPR------------LF 205 (297)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCceEEEecChH------------HH
Confidence 444444433332 3334666777888899999988654 446666555443333321111111 11
Q ss_pred EeccCCHHHHHHHHHHhhcCCCC
Q 002125 347 RMKELEDADAHKLFCQCAFGGDH 369 (963)
Q Consensus 347 ~l~~L~~~ea~~Lf~~~a~~~~~ 369 (963)
....=+..+..+++.+..++...
T Consensus 206 ~~l~~~~~~~~rl~srv~v~~~~ 228 (297)
T COG2842 206 KVLRRPEDELSRLYSRVRVGKLL 228 (297)
T ss_pred hccccchHHHHHHHHHhhhHhhh
Confidence 11122445667777777765443
No 409
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.84 E-value=0.1 Score=59.85 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
...+++|+|.+|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999998766544
No 410
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.84 E-value=0.21 Score=53.79 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.8
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
..++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999999999998876543
No 411
>PRK13947 shikimate kinase; Provisional
Probab=93.82 E-value=0.044 Score=54.36 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.0
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhc
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
-|.|.|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999987643
No 412
>PRK14528 adenylate kinase; Provisional
Probab=93.82 E-value=0.26 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.9
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999988764
No 413
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.80 E-value=0.096 Score=55.73 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=30.5
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
..-.++.|.|.+|+|||++|.+++.....+-+.++|++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34578999999999999999998776545556777776
No 414
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.78 E-value=0.22 Score=49.47 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=57.3
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEec--chhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCce
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNV--REAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKF 298 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~ 298 (963)
.+++|.|..|.|||||++.++.... ...+.+.+... .-..+...+..-+ ...-.+...+..++-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~LSgGq-------------~qrv~laral~~~p~ 91 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYIDLSGGE-------------LQRVAIAAALLRNAT 91 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCCCCHHH-------------HHHHHHHHHHhcCCC
Confidence 5899999999999999999876432 22333443211 0011111100000 011134455667788
Q ss_pred EEEEcCCC---CHHHHHHHHHhccCC--CCCceEEEEeCCchhhhcCCcceEEEec
Q 002125 299 LIVFDDVT---HPRQIESLIRRLDRL--ASGSRVIITTRDKQVLKNCRARQIFRMK 349 (963)
Q Consensus 299 LlVLDdv~---~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~~~~~~~~l~ 349 (963)
++++|... |....+.+...+... ..+..||++|.+....... .++++.+.
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 99999863 233222222222111 1235677777776554432 22444443
No 415
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.76 E-value=0.7 Score=60.31 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=24.2
Q ss_pred CCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 216 GFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 216 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+...++-|.++|++|+|||.||++++...
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 33456778999999999999999999753
No 416
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.73 E-value=0.11 Score=57.70 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=54.8
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCC---ceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC-CCHHHHHHHHcC
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFE---GSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV-WNIESQLNRLAR 295 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~~l~~~L~~ 295 (963)
-..|.|+|+.|.||||+++.+.+.+....+ .++.+.+..+... .+.... .....+....... .-.+.++..|+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~-~~~~~~-~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVY-DEIETI-SASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEec-cccccc-cceeeeeeccccccCHHHHHHHHhcc
Confidence 368999999999999999999887754433 2333332211110 010000 0000010000111 123467888999
Q ss_pred CceEEEEcCCCCHHHHHHHHH
Q 002125 296 KKFLIVFDDVTHPRQIESLIR 316 (963)
Q Consensus 296 k~~LlVLDdv~~~~~~~~l~~ 316 (963)
.+-.+++..+.+.+..+....
T Consensus 212 ~Pd~i~vGEiRd~et~~~al~ 232 (358)
T TIGR02524 212 KPHAILVGEARDAETISAALE 232 (358)
T ss_pred CCCEEeeeeeCCHHHHHHHHH
Confidence 999999999999988764443
No 417
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=93.73 E-value=0.38 Score=48.49 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.3
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
--|+|.|.+|+|||+|+..+.+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3477999999999999999876
No 418
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.70 E-value=0.2 Score=53.11 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=37.5
Q ss_pred HHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEe
Q 002125 209 IESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 256 (963)
Q Consensus 209 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 256 (963)
+..+|-.+-+.-+++=|+|+.|.||||+|.+++-.....-..++|++.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDt 96 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDT 96 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeC
Confidence 344454444566889999999999999999998877777778899873
No 419
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.064 Score=55.37 Aligned_cols=57 Identities=33% Similarity=0.367 Sum_probs=41.4
Q ss_pred ccccCCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
|.....++=|-+.++++|.+.... +-..++-|.++|.+|.|||-||++|++.-+..|
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 333345566778888888776652 223456788999999999999999999765555
No 420
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.66 E-value=0.051 Score=54.10 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998765
No 421
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.62 E-value=0.054 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987653
No 422
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.60 E-value=0.13 Score=53.91 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=34.4
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceE
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSY 252 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 252 (963)
.++...+........+|+|+|.||+|||||..++..++.++-..+.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVa 83 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVA 83 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEE
Confidence 3455555555567889999999999999999999887765544333
No 423
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.58 E-value=0.54 Score=46.07 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=36.5
Q ss_pred HHHHHHcCCceEEEEcC----CCCHHHHHH--HHHhccCCCCCceEEEEeCCchhhhcCC
Q 002125 288 SQLNRLARKKFLIVFDD----VTHPRQIES--LIRRLDRLASGSRVIITTRDKQVLKNCR 341 (963)
Q Consensus 288 ~l~~~L~~k~~LlVLDd----v~~~~~~~~--l~~~l~~~~~gs~IivTTR~~~v~~~~~ 341 (963)
.|.+.+-+++-+++-|. ++..-.|+- ++..+. ..|+.||++|-+.++...+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 56677778999999995 344444443 333333 57999999999998877664
No 424
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.56 E-value=0.09 Score=58.55 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=38.5
Q ss_pred CCcccchhhHHHHHHhHhc---------C---CCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 197 KDLVGVEWRIKEIESLLCT---------G---FAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
..++|.++.++.+..++.. + ....+.+.++|++|+|||+||+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 4578888888887766642 0 01146789999999999999999998764443
No 425
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.52 E-value=0.17 Score=48.92 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=18.2
Q ss_pred EEccCCCChhhHHHHHHHHH
Q 002125 225 IWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 225 I~G~gGiGKTtLA~~v~~~~ 244 (963)
|.|++|+||||+|+.++.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999864
No 426
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.51 E-value=0.83 Score=46.65 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=34.3
Q ss_pred HHHHHcCCceEEEEcCCCC---HHHHH-HHHHhccCCC-C-CceEEEEeCCchhhhcCCcceEEEec
Q 002125 289 QLNRLARKKFLIVFDDVTH---PRQIE-SLIRRLDRLA-S-GSRVIITTRDKQVLKNCRARQIFRMK 349 (963)
Q Consensus 289 l~~~L~~k~~LlVLDdv~~---~~~~~-~l~~~l~~~~-~-gs~IivTTR~~~v~~~~~~~~~~~l~ 349 (963)
+...+..++-++++|+... ....+ .+...+.... . |..||++|.+...... .++++.++
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 3445667889999999742 22233 3333332222 2 5678888888766543 44566554
No 427
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.49 E-value=0.044 Score=31.11 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=6.4
Q ss_pred CCCEEECcCCCCcccC
Q 002125 780 SVKNLVLTNNNLKRLP 795 (963)
Q Consensus 780 ~L~~L~Ls~n~l~~lp 795 (963)
+|+.|+|++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 428
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.47 E-value=0.21 Score=56.71 Aligned_cols=86 Identities=22% Similarity=0.295 Sum_probs=50.7
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCC--------CCCCHH-----
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDR--------NVWNIE----- 287 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~--------~~~~~~----- 287 (963)
+.++|.|.+|+|||||+..++.......+.++.+..+++ ....+.++.+++...-.... +.....
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE--R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 568999999999999999998766544333333333322 12334455555554321111 111111
Q ss_pred ----HHHHHH---cCCceEEEEcCCCCH
Q 002125 288 ----SQLNRL---ARKKFLIVFDDVTHP 308 (963)
Q Consensus 288 ----~l~~~L---~~k~~LlVLDdv~~~ 308 (963)
.+.+++ +++.+|+++||+-.-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 345555 579999999998543
No 429
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.42 E-value=0.22 Score=50.38 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
.++.|.|.+|+|||+++.+++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37889999999999999999886643
No 430
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.39 E-value=0.15 Score=49.75 Aligned_cols=120 Identities=21% Similarity=0.301 Sum_probs=61.4
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC----CCHHHHHHHHcCC
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV----WNIESQLNRLARK 296 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~----~~~~~l~~~L~~k 296 (963)
.+++|.|..|.|||||++.+...+. .....+++... .... ....... ..+.-...- ...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~-~~~~~~~----~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK-LPLEELR----RRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc-CCHHHHH----hceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 6899999999999999999986543 23455555321 1100 0011111 111000000 1111344556667
Q ss_pred ceEEEEcCCC---CHHHHHHHHHhccCC-CCCceEEEEeCCchhhhcCCcceEEEe
Q 002125 297 KFLIVFDDVT---HPRQIESLIRRLDRL-ASGSRVIITTRDKQVLKNCRARQIFRM 348 (963)
Q Consensus 297 ~~LlVLDdv~---~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~~~~~~~~l 348 (963)
+-++++|+.. |......+...+... ..+..++++|.+....... .++++.+
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 8899999874 233323332222111 2256788888877665543 2344444
No 431
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.38 E-value=0.063 Score=50.84 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+|.|.|.+|+||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 688999999999999999988654
No 432
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.41 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCChhhHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
-.+++|.|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999885
No 433
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.36 E-value=0.13 Score=55.89 Aligned_cols=36 Identities=33% Similarity=0.366 Sum_probs=29.0
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.+++.+.|.||+||||+|.+.+-...+....+.-++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998887777665554443
No 434
>PRK05439 pantothenate kinase; Provisional
Probab=93.35 E-value=0.11 Score=56.20 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 217 FAGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 217 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
...+-+|+|.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 355789999999999999999998886654
No 435
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.30 E-value=0.053 Score=54.18 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 436
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.28 E-value=0.45 Score=53.52 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
-+++|.|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3699999999999999999863
No 437
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.26 E-value=0.22 Score=51.77 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=34.2
Q ss_pred HHHHHHcCCceEEEEcCC----C--CHHHHHHHHHhccCCCCCceEEEEeCCchhhhc
Q 002125 288 SQLNRLARKKFLIVFDDV----T--HPRQIESLIRRLDRLASGSRVIITTRDKQVLKN 339 (963)
Q Consensus 288 ~l~~~L~~k~~LlVLDdv----~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~ 339 (963)
.+.+.|..++=|++||.- | ....+-.++..+.. .|..||++|-|-.....
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 566778899999999963 2 23345555555543 38889999998755443
No 438
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.26 E-value=0.11 Score=49.36 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=26.6
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhc-cCCceEEEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQ 255 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~ 255 (963)
++|.|+|..|+|||||++.+.+.+.. .+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 47999999999999999999998764 455554554
No 439
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.25 E-value=0.39 Score=56.70 Aligned_cols=50 Identities=22% Similarity=0.072 Sum_probs=37.2
Q ss_pred ccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 194 SYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
...+.++|....++++.+.+..-...-..|.|+|..|+||+.+|+++...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 34568999999888887766522222334789999999999999997653
No 440
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.23 E-value=0.21 Score=54.25 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=53.2
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccC--CceEEEEecchhhcc-CCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHcCC
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHF--EGSYFAQNVREAEET-GGIKDLQKELLSKLLNDRNVWN-IESQLNRLARK 296 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~-~~~l~~~L~~k 296 (963)
+.+.|.|..|.||||+++++.+.+.... ..++-+.+..+.... .+... +........ .+.++..|+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~~~~~~~~~~~~l~~aLR~~ 204 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LRTSDDAISMTRLLKATLRLR 204 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EEecCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999998776532 233334433332110 00000 000111112 24677788888
Q ss_pred ceEEEEcCCCCHHHHHHHH
Q 002125 297 KFLIVFDDVTHPRQIESLI 315 (963)
Q Consensus 297 ~~LlVLDdv~~~~~~~~l~ 315 (963)
+=.||+..+.+.+.++.+.
T Consensus 205 pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 205 PDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred CCEEEEeccCCHHHHHHHH
Confidence 8899999999988766543
No 441
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.21 E-value=0.27 Score=50.75 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 442
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.20 E-value=0.072 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEEccCCCChhhHHHHHHHHHhc
Q 002125 223 LGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
|.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 443
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.17 E-value=0.21 Score=56.94 Aligned_cols=85 Identities=24% Similarity=0.283 Sum_probs=50.0
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEEEecchhhccCCHHHHHHHHHHhhhcCC--------CCCCHH----
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLSKLLNDR--------NVWNIE---- 287 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~--------~~~~~~---- 287 (963)
+.++|.|.+|+|||||+.++++....+ -+.++++ .+++ ....+.++.+++...-.... +.....
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGE--R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGE--RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCc--chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 568999999999999999998876543 3444444 3322 12334445555543221111 111111
Q ss_pred -----HHHHHH---cCCceEEEEcCCCCH
Q 002125 288 -----SQLNRL---ARKKFLIVFDDVTHP 308 (963)
Q Consensus 288 -----~l~~~L---~~k~~LlVLDdv~~~ 308 (963)
.+.+++ .++++|+++||+-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 344555 378999999999543
No 444
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.21 Score=53.94 Aligned_cols=73 Identities=23% Similarity=0.181 Sum_probs=49.3
Q ss_pred chhhHHHHHHHHHHHhhhcccccccCCCcccchhhHHHHHHhHhc----------CCCCeEEEEEEccCCCChhhHHHHH
Q 002125 171 RPESKLVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLCT----------GFAGVYILGIWGIGGIGKTTIADAV 240 (963)
Q Consensus 171 ~~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v 240 (963)
.+++.+++-.-++|...- +-..=+.+.|..+..+-|++..-. ....-+-|.++|++|.|||-||++|
T Consensus 189 ~~d~~Lve~lerdIl~~n---p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAv 265 (491)
T KOG0738|consen 189 GYDADLVEALERDILQRN---PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAV 265 (491)
T ss_pred cchHHHHHHHHHHHhccC---CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHH
Confidence 455566666556665442 223346788888877777665541 1233567889999999999999999
Q ss_pred HHHHhc
Q 002125 241 FNKISR 246 (963)
Q Consensus 241 ~~~~~~ 246 (963)
+..-..
T Consensus 266 ATEc~t 271 (491)
T KOG0738|consen 266 ATECGT 271 (491)
T ss_pred HHhhcC
Confidence 986543
No 445
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.09 E-value=0.55 Score=47.10 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
...+++|.|.+|.||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987653
No 446
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.07 E-value=0.13 Score=61.34 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=46.9
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc-cCCceEEEEe
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQN 256 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~ 256 (963)
+...+.++|.+..++.|...+..+ +.+.++|.+|+||||+|+.+++.+.. +++...|..+
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 445577899999999888877643 36889999999999999999987633 3567777764
No 447
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.07 E-value=0.32 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.453 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
-.+++|.|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998764
No 448
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.06 E-value=0.19 Score=52.57 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=35.1
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.+.++|..+-..-..+.|.|.+|.|||++|.+++.....+-+.++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 444555444445679999999999999999998765544556677775
No 449
>PRK15453 phosphoribulokinase; Provisional
Probab=93.05 E-value=0.13 Score=54.14 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
....+|+|.|.+|+||||+|+.+.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34679999999999999999999876643
No 450
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.04 E-value=0.53 Score=44.89 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=32.1
Q ss_pred HHHHHHhhhcceeeeeeccCccchhhhHHHHHHHHHhhhcCCcEEEeEeeecc
Q 002125 71 QSLLDTIEASAISIIIFSERYASSGWCLDELSKILECKHDYGQIVIPVFCRVD 123 (963)
Q Consensus 71 ~~~~~~i~~s~~~v~v~s~~y~~s~~c~~El~~~~~~~~~~~~~v~pvf~~v~ 123 (963)
.++.++|+++++.++|++.+...+.+. .++.+.+.... .+..++-|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 467899999999999998766555442 25555554331 2334555553444
No 451
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.76 Score=53.40 Aligned_cols=173 Identities=19% Similarity=0.176 Sum_probs=91.7
Q ss_pred CCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCC
Q 002125 197 KDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGG 265 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 265 (963)
..+-|-...+..+..+... +-..++-+..+|++|+|||-+|++|+++.. +.+|..+..+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~pe------ 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPE------ 253 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHH------
Confidence 3455666666666665541 223467788999999999999999998754 3334432221
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCC-ceEEEEcCCCCH------------HHHHHHHHhccCCCCCceE--EEE
Q 002125 266 IKDLQKELLSKLLNDRNVWNIESQLNRLARK-KFLIVFDDVTHP------------RQIESLIRRLDRLASGSRV--IIT 330 (963)
Q Consensus 266 ~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k-~~LlVLDdv~~~------------~~~~~l~~~l~~~~~gs~I--ivT 330 (963)
+++...++....-...+.+..+.+ +-.|.+|+++.. ....++.....+.++.+++ |-|
T Consensus 254 -------li~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~a 326 (693)
T KOG0730|consen 254 -------LISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAA 326 (693)
T ss_pred -------HHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEe
Confidence 222222211111112333444556 888888887432 1233444444444543433 445
Q ss_pred eCCchhhhc----CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 331 TRDKQVLKN----CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 331 TR~~~v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
||...-+.. -..++..+++-.+..+-.++++...-.-... .......++..+.|.-
T Consensus 327 tnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~---~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 327 TNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL---SDVDLEDIAVSTHGYV 386 (693)
T ss_pred cCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc---chhhHHHHHHHccchh
Confidence 555433221 1234566777777777777776655322222 1123445555666554
No 452
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.03 E-value=0.066 Score=51.38 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+|.|.|.+|+||||+|+.+..++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999865
No 453
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.02 E-value=0.24 Score=59.96 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
..|+|+|..|+||||||+.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999864
No 454
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.01 E-value=0.16 Score=55.10 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=43.7
Q ss_pred CCCcccchhhHHHHHHhHhc----CCCCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 196 NKDLVGVEWRIKEIESLLCT----GFAGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
...|+|+++.++++.+.+.. .+..-+++.+.|+.|.||||||..+.+-+.+.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 45899999999999998873 23457899999999999999999988766554
No 455
>PRK05973 replicative DNA helicase; Provisional
Probab=92.97 E-value=0.26 Score=51.11 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=29.8
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
..-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34568999999999999999999876655555566664
No 456
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.97 E-value=0.86 Score=47.96 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=36.0
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEEEecchhhccCCHHHHHHHHHHh
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLSK 276 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 276 (963)
..-.++.|.|.+|+|||++|.+++.....+ -..++|+.. ......+...++..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~------E~~~~~~~~r~~~~ 64 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL------EMSKEQLLQRLLAS 64 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC------CCCHHHHHHHHHHH
Confidence 344689999999999999999988765544 445666642 23444555555443
No 457
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.97 E-value=0.19 Score=50.58 Aligned_cols=33 Identities=24% Similarity=0.107 Sum_probs=26.9
Q ss_pred EEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 223 LGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
+.|.|.+|+|||+||.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999999886655556677775
No 458
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.97 E-value=0.25 Score=56.03 Aligned_cols=86 Identities=22% Similarity=0.291 Sum_probs=50.2
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCC--------CCCCHH-----
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDR--------NVWNIE----- 287 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~--------~~~~~~----- 287 (963)
+.++|.|.+|+|||+|+..+..........++.+..+++- ...+.++.+++...-.... +.....
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER--~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER--TREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCC--chHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 5689999999999999999988665443433333333221 2334555555543211111 111111
Q ss_pred ----HHHHHH---cCCceEEEEcCCCCH
Q 002125 288 ----SQLNRL---ARKKFLIVFDDVTHP 308 (963)
Q Consensus 288 ----~l~~~L---~~k~~LlVLDdv~~~ 308 (963)
.+.+++ +++.+|+++||+-.-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 445555 458999999999543
No 459
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.97 E-value=1.3 Score=43.41 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=36.3
Q ss_pred HHHHHHcCCceEEEEcCCCC----HHHHHHHHHhccCCCCCceEEEEeCCchhhhcCCcceEEEec
Q 002125 288 SQLNRLARKKFLIVFDDVTH----PRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMK 349 (963)
Q Consensus 288 ~l~~~L~~k~~LlVLDdv~~----~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~ 349 (963)
.+.+++.+ +-+-|||.-+. ..|++-+.....-...|+.|||.|-++-++ .++...+|+..
T Consensus 139 i~~~rf~~-~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLl-AiP~A~I~~~~ 202 (233)
T COG3910 139 IFHNRFNG-QGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILL-AIPGAEIYEIS 202 (233)
T ss_pred HHHHHhcc-CceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhe-eCCCcEEEEEe
Confidence 44555544 45778998654 245444432222235679999999988554 55556677655
No 460
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.96 E-value=0.069 Score=55.24 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+|+|.|..|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 461
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.93 E-value=0.54 Score=48.37 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 462
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.92 E-value=1.6 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.++++++|+.|+||||++..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999987653
No 463
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.90 E-value=0.065 Score=54.57 Aligned_cols=23 Identities=43% Similarity=0.774 Sum_probs=21.0
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 464
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.87 E-value=0.26 Score=51.19 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEEccCCCChhhHHHHHHHHH
Q 002125 223 LGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~ 244 (963)
|.|.|++|+||||+|+.++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998764
No 465
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.86 E-value=0.13 Score=52.73 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecc
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVR 258 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~ 258 (963)
+.+..|.++||+|.||||..+.++..+..++.. .++.++.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLD 56 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLD 56 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCC
Confidence 345678889999999999999998877666643 3343443
No 466
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.86 E-value=0.63 Score=47.65 Aligned_cols=59 Identities=20% Similarity=0.398 Sum_probs=38.0
Q ss_pred HHHHHHcCCceEEEEcCC----C--CHHHHHHHHHhccCCCCCceEEEEeCCchhhhcCCcceEEEec
Q 002125 288 SQLNRLARKKFLIVFDDV----T--HPRQIESLIRRLDRLASGSRVIITTRDKQVLKNCRARQIFRMK 349 (963)
Q Consensus 288 ~l~~~L~~k~~LlVLDdv----~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~l~ 349 (963)
++.+.|...+-+|+.|.- + +.+.+-.++..+. ...|..||+.|-+..++..+. +++.+.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~d--r~i~l~ 216 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYAD--RVIELK 216 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhCC--EEEEEe
Confidence 677888889999999974 2 2223333333322 134788999999999887543 444443
No 467
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.83 E-value=0.44 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEEccCCCChhhHHHHHHHHHh
Q 002125 223 LGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+++.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998775
No 468
>PHA02774 E1; Provisional
Probab=92.79 E-value=0.44 Score=55.14 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=31.7
Q ss_pred HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 206 IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 206 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
+..+..+|. +..+...+.|+|++|.|||.+|..+.+-+. .....|+
T Consensus 421 l~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~--G~vi~fv 466 (613)
T PHA02774 421 LTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK--GKVISFV 466 (613)
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC--CCEEEEE
Confidence 344555553 334456899999999999999999998763 2334455
No 469
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.79 E-value=0.082 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEccCCCChhhHHHHHHHHH
Q 002125 223 LGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~ 244 (963)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998875
No 470
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.78 E-value=0.073 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.666 Sum_probs=19.8
Q ss_pred EEEEEccCCCChhhHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
++.|.|++|+||||+|+.+..+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3689999999999999999876
No 471
>PRK14529 adenylate kinase; Provisional
Probab=92.74 E-value=0.48 Score=48.81 Aligned_cols=93 Identities=20% Similarity=0.127 Sum_probs=47.7
Q ss_pred EEEEccCCCChhhHHHHHHHHHhccC-CceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCC-ceEE
Q 002125 223 LGIWGIGGIGKTTIADAVFNKISRHF-EGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARK-KFLI 300 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k-~~Ll 300 (963)
|.|.|++|+||||+|+.++.++.-.+ ...-.+... ......+....++++..-....+.-..+.+.+++.+. ..=+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~--i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREH--IGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhh--ccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence 77899999999999999988764221 111111100 1111122222333332211001112234666776532 3458
Q ss_pred EEcCC-CCHHHHHHHHHh
Q 002125 301 VFDDV-THPRQIESLIRR 317 (963)
Q Consensus 301 VLDdv-~~~~~~~~l~~~ 317 (963)
|||+. .+.+|.+.|...
T Consensus 81 iLDGfPRt~~Qa~~l~~~ 98 (223)
T PRK14529 81 LLDGFPRNKVQAEKLWEA 98 (223)
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 99998 556666655433
No 472
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.74 E-value=0.078 Score=51.00 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.5
Q ss_pred EEEEEccCCCChhhHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVF 241 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~ 241 (963)
.|+|+|.+|+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 473
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.73 E-value=0.47 Score=43.55 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=28.5
Q ss_pred HHHHHHhHhc-CCCCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 206 IKEIESLLCT-GFAGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 206 ~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
++.|...+.. .+.++-|+..+|.+|+|||-+|+.+++.
T Consensus 38 ~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 38 VNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3444555543 3456788999999999999999998875
No 474
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=92.72 E-value=1.2 Score=45.12 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEEccCCCChhhHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~ 242 (963)
+++|+|..|.|||||++.++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999863
No 475
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.72 E-value=0.067 Score=50.79 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=21.6
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
.++|+|+.|+|||||++.+.......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999998765433
No 476
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.72 E-value=0.18 Score=53.62 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=33.8
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEE
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYF 253 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 253 (963)
+.++++. ..+..++.|.|.+|.|||||+..+.+.+.......+.
T Consensus 94 ~~r~~~~--~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 94 RNRARFA--ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred HHHHHHH--hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 4445553 3568999999999999999999999988766544444
No 477
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.71 E-value=0.57 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.5
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.+++|+|..|.|||||.+.++...
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhc
Confidence 589999999999999999998654
No 478
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.70 E-value=0.12 Score=50.70 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.3
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
..++++|+|..|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999877653
No 479
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.69 E-value=0.087 Score=52.67 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.9
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
++++|.|+.|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987653
No 480
>PRK13948 shikimate kinase; Provisional
Probab=92.69 E-value=0.085 Score=52.60 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
..+.|.++|+.|+||||+++.++.++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457889999999999999999998764
No 481
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.67 E-value=0.34 Score=48.03 Aligned_cols=111 Identities=18% Similarity=0.282 Sum_probs=57.1
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhc--------------cCCH---HHHHHHHHHhhhcCCC
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEE--------------TGGI---KDLQKELLSKLLNDRN 282 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~--------------~~~~---~~l~~~ll~~l~~~~~ 282 (963)
-.+++|.|..|.|||||++.++.... ...+.+++... .... ...+ ..+.+.+. +.. .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--LS~--G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGK-DIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--LSG--G 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-EcccchHhhhccEEEEecCCccccCCcHHHHhh--cCH--H
Confidence 35899999999999999999876432 23344444211 0000 0000 00011100 000 0
Q ss_pred CCCHHHHHHHHcCCceEEEEcCCCC---HHH---HHHHHHhccCCCCCceEEEEeCCchhhh
Q 002125 283 VWNIESQLNRLARKKFLIVFDDVTH---PRQ---IESLIRRLDRLASGSRVIITTRDKQVLK 338 (963)
Q Consensus 283 ~~~~~~l~~~L~~k~~LlVLDdv~~---~~~---~~~l~~~l~~~~~gs~IivTTR~~~v~~ 338 (963)
....-.+...+..++-++++|+... ... +..++..+. ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHH
Confidence 0001145556677888999998732 222 223333322 23677888888876554
No 482
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.66 E-value=0.17 Score=51.18 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=25.8
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhccCCceEEEEe
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 256 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 256 (963)
.|+|+|-||+||||+|..++.++.++-...+.+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVD 36 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVD 36 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEe
Confidence 58999999999999999977766555433444433
No 483
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.66 E-value=0.33 Score=58.63 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.2
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..++|+|..|.|||||++.+...+
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999987644
No 484
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.65 E-value=1.3 Score=45.38 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCChhhHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
-.+++|.|..|.|||||++.++.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 485
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.64 E-value=0.34 Score=45.16 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=54.2
Q ss_pred ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcccccccCCC
Q 002125 654 LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSSIFSLCMFK 732 (963)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~ 732 (963)
|.++++|+.+.+.. .....-...|.++++|+.+.+.++ +..++.. +.++++|+.+.+.+ ....++...+ ..++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F--~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAF--SNCT 81 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTT--TT-T
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccc--cccc
Confidence 45566777777664 233333345677777888888764 6666553 66676788888864 2333333322 2367
Q ss_pred CCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccC-cccCCCCCC
Q 002125 733 SLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVP-ESLGQLSSV 781 (963)
Q Consensus 733 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L 781 (963)
+|+.+.+..+ +...-...+.+. +|+.+.+.. .+..++ ..|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7888887653 333333456666 888888765 444443 335555444
No 486
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.63 E-value=0.22 Score=58.34 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=37.6
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
..++|....+.++.+.+..-...-..|.|+|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899999888887777643334456889999999999999998774
No 487
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.62 E-value=0.27 Score=53.89 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=30.1
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
++.+.+.....+..+|+|.|.+|+|||||+..+...+...
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444443334567899999999999999999998877654
No 488
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.60 E-value=0.27 Score=51.84 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=48.9
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh----ccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCC--------CCCCH--
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS----RHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDR--------NVWNI-- 286 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~----~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~--------~~~~~-- 286 (963)
+-++|.|.+|+|||+|+..+.+... .+-+.++++. +++ ......++.+++...-.... +....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGe--R~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGI--TMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecc--ccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 4579999999999999999887543 1234455553 322 12334455555444311111 00001
Q ss_pred -------HHHHHHHc---CCceEEEEcCCCCHH
Q 002125 287 -------ESQLNRLA---RKKFLIVFDDVTHPR 309 (963)
Q Consensus 287 -------~~l~~~L~---~k~~LlVLDdv~~~~ 309 (963)
-.+.++++ ++++|+++||+-...
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHHH
Confidence 13445553 689999999985543
No 489
>PRK13949 shikimate kinase; Provisional
Probab=92.59 E-value=0.086 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.4
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
-|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 490
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.56 E-value=0.16 Score=62.32 Aligned_cols=24 Identities=25% Similarity=0.093 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCChhhHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
.++++|+|+.|.||||+.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999988754
No 491
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.55 E-value=0.34 Score=54.00 Aligned_cols=106 Identities=19% Similarity=0.145 Sum_probs=60.0
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCC--ceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHcCCc
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWN-IESQLNRLARKK 297 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-~~~l~~~L~~k~ 297 (963)
..+.|.|..|.||||++..+.+.+....+ .++-+.+..+..- .+...+....-.+++ .+... .+.++..|+..+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~-~~~~~~~~~~q~evg--~~~~~~~~~l~~aLR~~P 226 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL-GSPDDLLPPAQSQIG--RDVDSFANGIRLALRRAP 226 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc-CCCceeecccccccC--CCccCHHHHHHHhhccCC
Confidence 46889999999999999999887654432 2333333222110 011111000001111 11122 247788899999
Q ss_pred eEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeC
Q 002125 298 FLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTR 332 (963)
Q Consensus 298 ~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR 332 (963)
=.|+++.+.+.+.++...... ..|-.++-|--
T Consensus 227 D~I~vGEiRd~et~~~al~aa---~TGH~v~tTlH 258 (372)
T TIGR02525 227 KIIGVGEIRDLETFQAAVLAG---QSGHFCLGTLH 258 (372)
T ss_pred CEEeeCCCCCHHHHHHHHHHH---hcCCcEEEeeC
Confidence 999999999998877544332 23444444433
No 492
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.55 E-value=0.41 Score=55.63 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=61.4
Q ss_pred ccchhh-HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhh
Q 002125 200 VGVEWR-IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLL 278 (963)
Q Consensus 200 vGr~~~-~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 278 (963)
.|...+ ++.+..++.. ...++.|.|+.|.||||+...+.+.+...-..++-+.+-.+... .++... ++.
T Consensus 224 Lg~~~~~~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~-~~~~q~------~v~ 293 (486)
T TIGR02533 224 LGMSPELLSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI-EGIGQI------QVN 293 (486)
T ss_pred cCCCHHHHHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec-CCCceE------EEc
Confidence 344433 4455555532 23589999999999999999888766433223333432211110 111100 001
Q ss_pred cCCCCCCHHHHHHHHcCCceEEEEcCCCCHHHHHHHHH
Q 002125 279 NDRNVWNIESQLNRLARKKFLIVFDDVTHPRQIESLIR 316 (963)
Q Consensus 279 ~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~~~~l~~ 316 (963)
......-.+.++..|+..+=.|++..+.+.+.......
T Consensus 294 ~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~ 331 (486)
T TIGR02533 294 PKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQ 331 (486)
T ss_pred cccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHH
Confidence 10011223478888999999999999999987655443
No 493
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.49 E-value=0.1 Score=52.44 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=29.4
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
.|++.|+|+.|+|||||++.+......+|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 46899999999999999999999888888544444
No 494
>PHA02244 ATPase-like protein
Probab=92.48 E-value=0.14 Score=56.17 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=31.7
Q ss_pred CCCcccchhhHH----HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 196 NKDLVGVEWRIK----EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 196 ~~~~vGr~~~~~----~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
...++|...... .+..++..+ .-|.|+|++|+|||+||+++++...
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 455677555543 344444322 2477899999999999999998754
No 495
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.48 E-value=0.11 Score=52.55 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998874
No 496
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.45 E-value=6.6 Score=42.21 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=42.9
Q ss_pred CCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc-hhhhcC-CcceEEEeccCCHHHHHHHHH
Q 002125 295 RKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK-QVLKNC-RARQIFRMKELEDADAHKLFC 361 (963)
Q Consensus 295 ~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 361 (963)
+++-++|+||++.. .....|+..+..-++++.+|.+|.+. .++... .....+.+.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 45668999999764 45677777776556667777777654 444433 2345777766 6666666664
No 497
>PRK13946 shikimate kinase; Provisional
Probab=92.43 E-value=0.089 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=22.2
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+.|.+.|++|+||||+|+.++.++
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999876
No 498
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.41 E-value=0.11 Score=53.22 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=24.2
Q ss_pred cCCCCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 215 TGFAGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 215 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
.+....+.++|+|++|+|||||++.+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456789999999999999999998753
No 499
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.37 E-value=0.14 Score=56.25 Aligned_cols=92 Identities=20% Similarity=0.066 Sum_probs=53.1
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhcc--CCHHHHHHHHHHhhhcCCCC-CCHHHHHHHHcCC
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET--GGIKDLQKELLSKLLNDRNV-WNIESQLNRLARK 296 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~--~~~~~l~~~ll~~l~~~~~~-~~~~~l~~~L~~k 296 (963)
.+.|.|.|..|.||||+++++...+... +.++-+.+..+..-. .+...+. ...-...... .-.+.++..|+.+
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~-~ri~tiEd~~El~l~~~~n~~~~~---~~~~~~~~~~~~~~~ll~~~LR~~ 235 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAI-ERLITVEDAREIVLSNHPNRVHLL---ASKGGQGRAKVTTQDLIEACLRLR 235 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCC-CeEEEecCCCccccccCCCEEEEE---ecCCCCCcCcCcHHHHHHHHhccC
Confidence 3569999999999999999998766443 223333332222110 0100000 0000000111 2234677788888
Q ss_pred ceEEEEcCCCCHHHHHHHH
Q 002125 297 KFLIVFDDVTHPRQIESLI 315 (963)
Q Consensus 297 ~~LlVLDdv~~~~~~~~l~ 315 (963)
+=.||++.+.+.+.++.+.
T Consensus 236 PD~IivGEiR~~ea~~~l~ 254 (332)
T PRK13900 236 PDRIIVGELRGAEAFSFLR 254 (332)
T ss_pred CCeEEEEecCCHHHHHHHH
Confidence 9999999999988776543
No 500
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.37 E-value=0.13 Score=49.02 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.++++|+|.+|+||||+.+.+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999998877665
Done!