Query 002125
Match_columns 963
No_of_seqs 893 out of 5647
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 13:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.1E-48 3.8E-53 382.1 11.6 171 20-190 29-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 4.6E-48 1.6E-52 372.8 10.7 169 23-193 5-175 (176)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.2E-40 4E-45 394.1 22.8 294 200-505 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 5.2E-35 1.8E-39 383.1 23.0 302 191-504 118-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 4.3E-35 1.5E-39 348.3 18.1 273 197-497 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 1E-32 3.5E-37 331.3 23.2 297 191-501 118-449 (591)
7 3h16_A TIR protein; bacteria T 100.0 1.3E-30 4.3E-35 252.2 6.3 133 22-157 16-149 (154)
8 3rgz_A Protein brassinosteroid 99.9 3.2E-26 1.1E-30 282.8 20.7 237 557-796 294-556 (768)
9 4fcg_A Uncharacterized protein 99.9 2.1E-24 7E-29 238.5 21.2 227 554-819 81-318 (328)
10 3rgz_A Protein brassinosteroid 99.9 1.1E-24 3.8E-29 269.1 19.4 322 535-861 298-716 (768)
11 4eco_A Uncharacterized protein 99.9 2.3E-24 7.7E-29 260.2 18.6 252 554-813 203-499 (636)
12 4ecn_A Leucine-rich repeat pro 99.9 4.1E-24 1.4E-28 262.3 21.1 300 554-861 445-818 (876)
13 1ogq_A PGIP-2, polygalacturona 99.9 2E-24 7E-29 237.0 16.2 223 555-814 51-280 (313)
14 4eco_A Uncharacterized protein 99.9 3.4E-24 1.2E-28 258.6 18.4 230 569-815 198-470 (636)
15 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-23 4.7E-28 249.9 17.4 333 535-885 30-511 (549)
16 4ecn_A Leucine-rich repeat pro 99.9 4.7E-23 1.6E-27 252.9 22.2 297 569-872 440-809 (876)
17 3t6q_A CD180 antigen; protein- 99.9 1.5E-22 5E-27 244.1 26.2 149 659-810 255-408 (606)
18 2id5_A Lingo-1, leucine rich r 99.9 1.2E-22 4E-27 237.3 24.2 280 535-829 36-334 (477)
19 3v47_A TOLL-like receptor 5B a 99.9 3.7E-23 1.3E-27 240.1 19.8 317 535-861 34-407 (455)
20 3ub2_A TOLL/interleukin-1 rece 99.9 6.9E-25 2.3E-29 208.1 3.2 131 21-156 5-145 (146)
21 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-23 6E-28 229.5 12.6 225 548-813 69-302 (313)
22 2id5_A Lingo-1, leucine rich r 99.9 2E-22 6.8E-27 235.4 21.7 244 570-825 49-306 (477)
23 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-22 5.3E-27 239.1 19.7 121 730-861 322-456 (520)
24 3v47_A TOLL-like receptor 5B a 99.9 1.3E-22 4.6E-27 235.3 18.3 294 558-861 31-383 (455)
25 1xku_A Decorin; proteoglycan, 99.9 6E-22 2E-26 219.4 22.5 163 647-817 112-278 (330)
26 3o6n_A APL1; leucine-rich repe 99.9 8E-22 2.7E-26 223.8 22.3 105 705-814 226-330 (390)
27 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-22 2E-26 238.8 22.3 77 535-613 36-116 (606)
28 3oja_B Anopheles plasmodium-re 99.9 7.7E-22 2.6E-26 236.6 22.6 118 705-827 232-357 (597)
29 3j0a_A TOLL-like receptor 5; m 99.9 6.3E-22 2.2E-26 247.0 22.0 177 682-861 266-516 (844)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-21 3.6E-26 234.1 22.4 97 729-825 350-460 (562)
31 2ft3_A Biglycan; proteoglycan, 99.9 8.6E-22 2.9E-26 218.3 19.6 160 647-815 114-277 (332)
32 3vq2_A TLR4, TOLL-like recepto 99.9 3.1E-21 1E-25 232.5 25.3 170 678-861 346-533 (606)
33 1ziw_A TOLL-like receptor 3; i 99.9 3.5E-21 1.2E-25 235.3 25.4 220 639-861 386-621 (680)
34 3t6q_A CD180 antigen; protein- 99.9 2.9E-21 9.8E-26 232.8 23.8 250 554-813 275-534 (606)
35 4fcg_A Uncharacterized protein 99.9 1.1E-21 3.9E-26 216.4 18.2 213 554-795 101-317 (328)
36 4fmz_A Internalin; leucine ric 99.9 1.3E-20 4.5E-25 210.2 26.1 230 554-811 63-296 (347)
37 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-21 5.9E-26 231.8 20.0 288 558-861 27-463 (549)
38 2z7x_B TOLL-like receptor 1, v 99.9 2.9E-21 9.9E-26 228.1 20.6 130 679-813 321-455 (520)
39 4fmz_A Internalin; leucine ric 99.9 1.8E-20 6.2E-25 209.1 25.0 281 554-863 41-325 (347)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-20 3.8E-25 225.2 23.6 129 679-813 350-484 (562)
41 1xku_A Decorin; proteoglycan, 99.9 1.2E-20 4.2E-25 208.8 22.1 237 558-812 53-303 (330)
42 2z63_A TOLL-like receptor 4, v 99.9 1.4E-20 4.6E-25 225.1 23.8 133 677-811 277-430 (570)
43 3o6n_A APL1; leucine-rich repe 99.9 2.3E-20 7.8E-25 211.8 24.1 240 556-814 44-307 (390)
44 1o6v_A Internalin A; bacterial 99.9 2.3E-20 7.9E-25 216.9 24.3 147 654-812 173-319 (466)
45 2z66_A Variable lymphocyte rec 99.9 4.5E-21 1.6E-25 209.9 17.1 208 567-812 20-233 (306)
46 3zyi_A Leucine-rich repeat-con 99.9 1.8E-20 6.3E-25 216.9 22.7 160 649-813 137-301 (452)
47 2z63_A TOLL-like receptor 4, v 99.9 9.1E-21 3.1E-25 226.6 20.5 179 679-861 344-530 (570)
48 2z66_A Variable lymphocyte rec 99.8 1.2E-20 4E-25 206.6 18.9 223 554-813 28-259 (306)
49 1ziw_A TOLL-like receptor 3; i 99.8 3.6E-20 1.2E-24 226.4 25.2 301 559-862 250-597 (680)
50 3oja_B Anopheles plasmodium-re 99.8 9.7E-21 3.3E-25 227.1 19.4 279 555-861 49-357 (597)
51 2ft3_A Biglycan; proteoglycan, 99.8 1.6E-20 5.4E-25 208.1 19.3 237 558-813 55-305 (332)
52 3zyj_A Leucine-rich repeat-con 99.8 3.4E-20 1.2E-24 213.8 22.6 160 649-813 126-290 (440)
53 1o6v_A Internalin A; bacterial 99.8 9E-20 3.1E-24 211.9 25.1 280 554-865 65-369 (466)
54 1ozn_A Reticulon 4 receptor; N 99.8 6.4E-20 2.2E-24 198.5 22.3 209 567-813 24-236 (285)
55 3zyi_A Leucine-rich repeat-con 99.8 6.6E-20 2.3E-24 212.2 23.7 225 567-830 67-305 (452)
56 3bz5_A Internalin-J, INLJ; leu 99.8 6.5E-20 2.2E-24 211.6 22.7 221 554-811 39-263 (457)
57 3zyj_A Leucine-rich repeat-con 99.8 1.1E-19 3.7E-24 209.6 24.0 226 565-829 54-293 (440)
58 3j0a_A TOLL-like receptor 5; m 99.8 4.6E-20 1.6E-24 230.2 22.2 272 535-814 28-350 (844)
59 1wwl_A Monocyte differentiatio 99.8 8.3E-21 2.9E-25 208.2 11.9 203 575-815 93-309 (312)
60 2z80_A TOLL-like receptor 2, v 99.8 1.5E-20 5.2E-25 210.2 13.3 243 558-813 53-312 (353)
61 2z80_A TOLL-like receptor 2, v 99.8 1.6E-20 5.4E-25 210.0 12.1 191 566-794 43-237 (353)
62 2z62_A TOLL-like receptor 4, v 99.8 1.3E-19 4.4E-24 195.1 18.8 209 566-813 19-235 (276)
63 3bz5_A Internalin-J, INLJ; leu 99.8 6.6E-19 2.2E-23 203.2 25.5 275 550-862 59-352 (457)
64 1p9a_G Platelet glycoprotein I 99.8 3.2E-19 1.1E-23 193.1 21.2 201 572-813 5-206 (290)
65 1fyx_A TOLL-like receptor 2; b 99.8 1.6E-21 5.6E-26 186.4 2.1 101 23-125 2-108 (149)
66 2js7_A Myeloid differentiation 99.8 4.3E-21 1.5E-25 185.2 4.6 100 23-124 13-117 (160)
67 3oja_A Leucine-rich immune mol 99.8 5.5E-20 1.9E-24 214.2 14.4 150 657-813 98-248 (487)
68 1ozn_A Reticulon 4 receptor; N 99.8 3.6E-19 1.2E-23 192.6 19.6 199 558-793 33-239 (285)
69 2j67_A TOLL like receptor 10; 99.8 6.2E-21 2.1E-25 187.0 4.4 99 22-122 31-134 (178)
70 1jl5_A Outer protein YOPM; leu 99.8 1.1E-19 3.7E-24 209.6 15.4 158 647-825 143-307 (454)
71 3o53_A Protein LRIM1, AGAP0063 99.8 1E-19 3.5E-24 200.1 13.1 216 575-814 32-249 (317)
72 1wwl_A Monocyte differentiatio 99.8 8.9E-21 3E-25 208.0 4.2 162 650-815 111-287 (312)
73 2o6q_A Variable lymphocyte rec 99.8 2.8E-18 9.7E-23 183.9 22.6 196 578-813 17-216 (270)
74 1t3g_A X-linked interleukin-1 99.8 2.9E-20 9.8E-25 179.3 6.1 101 25-125 1-115 (159)
75 4glp_A Monocyte differentiatio 99.8 3.2E-19 1.1E-23 195.5 13.9 207 575-815 89-307 (310)
76 3oja_A Leucine-rich immune mol 99.8 1.8E-19 6.3E-24 209.8 10.7 231 555-810 32-270 (487)
77 1h6u_A Internalin H; cell adhe 99.8 1.7E-18 5.9E-23 189.2 17.7 193 573-814 37-229 (308)
78 3o53_A Protein LRIM1, AGAP0063 99.8 1.7E-19 5.9E-24 198.2 9.7 233 554-811 31-271 (317)
79 4g8a_A TOLL-like receptor 4; l 99.8 4.1E-18 1.4E-22 206.2 22.8 132 730-861 443-579 (635)
80 2xwt_C Thyrotropin receptor; s 99.8 2.5E-18 8.7E-23 180.7 16.6 203 566-811 23-235 (239)
81 1jl5_A Outer protein YOPM; leu 99.8 1.7E-17 5.9E-22 191.2 24.7 77 658-746 215-291 (454)
82 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-17 5.9E-22 197.1 25.3 213 554-814 61-273 (622)
83 1p9a_G Platelet glycoprotein I 99.8 9E-18 3.1E-22 181.7 20.7 198 554-792 7-208 (290)
84 2o6q_A Variable lymphocyte rec 99.8 1.2E-17 4.2E-22 178.9 21.3 186 567-792 29-218 (270)
85 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-17 3.8E-22 198.7 21.7 252 559-861 42-296 (622)
86 2z62_A TOLL-like receptor 4, v 99.8 1.1E-17 3.9E-22 179.9 19.8 200 559-792 30-237 (276)
87 3rfs_A Internalin B, repeat mo 99.7 9.7E-18 3.3E-22 179.9 15.9 154 654-844 81-241 (272)
88 3rfs_A Internalin B, repeat mo 99.7 8.5E-18 2.9E-22 180.3 15.0 205 554-803 38-247 (272)
89 1h6u_A Internalin H; cell adhe 99.7 1.8E-17 6.2E-22 181.1 17.2 196 554-798 38-236 (308)
90 4g8a_A TOLL-like receptor 4; l 99.7 5.5E-17 1.9E-21 196.4 22.6 172 656-830 369-582 (635)
91 3m19_A Variable lymphocyte rec 99.7 7.6E-17 2.6E-21 170.7 19.8 163 647-814 26-191 (251)
92 3cvr_A Invasion plasmid antige 99.7 8.5E-17 2.9E-21 188.7 20.5 176 578-814 60-242 (571)
93 4glp_A Monocyte differentiatio 99.7 2.1E-17 7.3E-22 180.9 13.2 199 557-792 91-307 (310)
94 3m19_A Variable lymphocyte rec 99.7 1.9E-16 6.4E-21 167.6 19.4 177 578-794 15-194 (251)
95 2ca6_A RAN GTPase-activating p 99.7 1.9E-18 6.5E-23 195.6 3.5 163 650-815 114-316 (386)
96 2xwt_C Thyrotropin receptor; s 99.7 1E-16 3.5E-21 168.4 15.8 194 554-789 31-236 (239)
97 1z7x_W Ribonuclease inhibitor; 99.7 2.6E-18 8.8E-23 199.5 3.3 296 558-862 4-383 (461)
98 2ca6_A RAN GTPase-activating p 99.7 3.7E-18 1.3E-22 193.3 4.4 224 567-813 22-285 (386)
99 2qen_A Walker-type ATPase; unk 99.7 7.2E-16 2.5E-20 171.8 21.9 287 190-498 5-349 (350)
100 1h6t_A Internalin B; cell adhe 99.7 2.9E-16 1E-20 169.9 15.2 172 597-815 42-213 (291)
101 4ay9_X Follicle-stimulating ho 99.7 9.4E-16 3.2E-20 170.8 19.0 194 565-796 20-219 (350)
102 1m9s_A Internalin B; cell inva 99.7 2.6E-16 8.8E-21 186.8 14.3 176 572-795 38-213 (605)
103 1h6t_A Internalin B; cell adhe 99.7 5.8E-16 2E-20 167.6 15.3 176 573-796 42-217 (291)
104 2fna_A Conserved hypothetical 99.7 1.4E-15 4.8E-20 170.0 18.5 286 190-497 6-356 (357)
105 3cvr_A Invasion plasmid antige 99.6 9.9E-16 3.4E-20 179.7 16.7 185 558-803 60-255 (571)
106 2ast_B S-phase kinase-associat 99.6 6.1E-17 2.1E-21 179.5 6.0 206 571-812 62-282 (336)
107 4ezg_A Putative uncharacterize 99.6 5.1E-16 1.8E-20 157.7 11.4 154 654-815 40-194 (197)
108 2ast_B S-phase kinase-associat 99.6 5.1E-17 1.7E-21 180.1 3.8 197 557-789 70-282 (336)
109 1dce_A Protein (RAB geranylger 99.6 4.8E-18 1.6E-22 200.5 -6.0 202 574-809 346-567 (567)
110 1z7x_W Ribonuclease inhibitor; 99.6 9E-17 3.1E-21 186.5 2.3 165 650-814 219-410 (461)
111 3goz_A Leucine-rich repeat-con 99.6 6.7E-17 2.3E-21 181.1 0.5 209 571-812 16-263 (362)
112 1m9s_A Internalin B; cell inva 99.6 5.6E-15 1.9E-19 175.3 16.3 189 578-815 22-210 (605)
113 4ezg_A Putative uncharacterize 99.6 3.6E-15 1.2E-19 151.4 11.6 154 598-793 41-195 (197)
114 3goz_A Leucine-rich repeat-con 99.6 1.1E-15 3.9E-20 171.0 8.0 252 581-864 2-299 (362)
115 1w5s_A Origin recognition comp 99.6 2.4E-14 8.3E-19 163.3 19.1 279 195-483 20-371 (412)
116 2xot_A Amphoterin-induced prot 99.6 6.9E-15 2.4E-19 164.5 14.0 162 646-813 29-200 (361)
117 2v70_A SLIT-2, SLIT homolog 2 99.6 2.1E-14 7.3E-19 148.3 16.0 127 684-813 34-164 (220)
118 2o6s_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 149.0 13.7 135 657-801 51-188 (208)
119 1dce_A Protein (RAB geranylger 99.6 6.8E-17 2.3E-21 190.6 -4.0 177 598-815 346-546 (567)
120 2v9t_B SLIT homolog 2 protein 99.6 3.1E-14 1.1E-18 147.1 15.4 137 647-812 23-162 (220)
121 3e6j_A Variable lymphocyte rec 99.6 4E-14 1.4E-18 147.3 16.2 147 661-813 22-170 (229)
122 4ay9_X Follicle-stimulating ho 99.6 3.6E-14 1.2E-18 158.0 16.8 196 580-816 12-216 (350)
123 1xeu_A Internalin C; cellular 99.6 4.2E-15 1.4E-19 158.1 8.8 130 654-795 59-188 (263)
124 2v70_A SLIT-2, SLIT homolog 2 99.6 3.7E-14 1.3E-18 146.5 15.5 143 645-792 21-166 (220)
125 2o6s_A Variable lymphocyte rec 99.6 2.4E-14 8.3E-19 146.6 13.9 137 647-812 19-158 (208)
126 2v9t_B SLIT homolog 2 protein 99.5 6.5E-14 2.2E-18 144.6 15.9 140 685-829 14-166 (220)
127 3e6j_A Variable lymphocyte rec 99.5 6.6E-14 2.2E-18 145.6 15.7 141 646-793 30-173 (229)
128 1xeu_A Internalin C; cellular 99.5 3.4E-14 1.1E-18 151.2 13.1 154 648-815 32-185 (263)
129 2xot_A Amphoterin-induced prot 99.5 4.9E-14 1.7E-18 157.6 13.0 134 656-792 62-202 (361)
130 2ell_A Acidic leucine-rich nuc 99.5 4.5E-14 1.5E-18 139.3 11.1 137 657-797 23-165 (168)
131 2qby_B CDC6 homolog 3, cell di 99.5 1.7E-12 5.9E-17 146.4 25.3 273 196-483 19-339 (384)
132 4b8c_D Glucose-repressible alc 99.5 5.9E-15 2E-19 179.7 3.6 153 592-789 215-369 (727)
133 2ell_A Acidic leucine-rich nuc 99.5 1.4E-13 4.7E-18 135.7 10.2 130 680-814 22-159 (168)
134 2je0_A Acidic leucine-rich nuc 99.4 1.5E-13 5.3E-18 132.4 8.0 125 658-810 17-148 (149)
135 2qby_A CDC6 homolog 1, cell di 99.4 3.4E-12 1.2E-16 144.0 20.1 279 194-483 17-348 (386)
136 2je0_A Acidic leucine-rich nuc 99.4 2.4E-13 8.4E-18 131.0 8.3 101 639-745 22-126 (149)
137 3ogk_B Coronatine-insensitive 99.4 1.3E-14 4.3E-19 174.1 -1.9 173 650-826 262-474 (592)
138 4b8c_D Glucose-repressible alc 99.4 6.7E-14 2.3E-18 170.4 3.8 180 568-791 215-403 (727)
139 2p1m_B Transport inhibitor res 99.4 6E-15 2.1E-19 177.0 -5.7 266 556-825 129-491 (594)
140 3ogk_B Coronatine-insensitive 99.4 5.8E-14 2E-18 168.3 2.4 170 654-825 188-388 (592)
141 2v1u_A Cell division control p 99.4 2.7E-11 9.2E-16 136.7 24.1 275 195-483 17-351 (387)
142 1w8a_A SLIT protein; signaling 99.4 2.5E-12 8.6E-17 129.6 13.9 124 685-814 11-138 (192)
143 1w8a_A SLIT protein; signaling 99.4 2.3E-12 7.7E-17 130.0 13.2 126 661-792 11-139 (192)
144 2wfh_A SLIT homolog 2 protein 99.4 5E-12 1.7E-16 127.4 14.6 121 686-812 14-136 (193)
145 2wfh_A SLIT homolog 2 protein 99.4 4.5E-12 1.5E-16 127.8 13.9 126 661-792 13-139 (193)
146 1a9n_A U2A', U2A'; complex (nu 99.4 7.6E-13 2.6E-17 131.5 8.0 126 680-811 17-149 (176)
147 1ds9_A Outer arm dynein; leuci 99.3 2.3E-14 7.9E-19 145.5 -6.8 147 655-808 15-180 (198)
148 2o6r_A Variable lymphocyte rec 99.3 2.8E-11 9.7E-16 120.1 14.5 123 685-813 10-135 (177)
149 1njg_A DNA polymerase III subu 99.3 9.4E-11 3.2E-15 122.8 18.6 187 193-398 19-230 (250)
150 1fnn_A CDC6P, cell division co 99.3 1.1E-10 3.7E-15 131.8 20.3 278 195-483 15-351 (389)
151 1a9n_A U2A', U2A'; complex (nu 99.3 4.6E-12 1.6E-16 125.8 7.6 134 654-794 15-155 (176)
152 2p1m_B Transport inhibitor res 99.2 5.9E-13 2E-17 159.6 -0.4 151 655-810 181-346 (594)
153 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.7E-15 115.9 14.2 128 660-794 9-139 (177)
154 1ds9_A Outer arm dynein; leuci 99.2 1.7E-13 5.8E-18 139.1 -8.5 138 646-792 36-185 (198)
155 2chg_A Replication factor C sm 99.1 5.5E-10 1.9E-14 115.1 16.6 187 192-395 12-203 (226)
156 2r9u_A Variable lymphocyte rec 99.1 1.6E-10 5.4E-15 114.2 11.5 81 733-813 34-116 (174)
157 3g39_A Variable lymphocyte rec 99.1 2.4E-10 8.4E-15 112.4 11.6 80 733-812 31-112 (170)
158 3sb4_A Hypothetical leucine ri 99.1 2.2E-10 7.4E-15 126.1 12.1 78 731-810 225-305 (329)
159 2r9u_A Variable lymphocyte rec 99.1 7.2E-10 2.5E-14 109.5 12.4 110 684-798 14-124 (174)
160 3g39_A Variable lymphocyte rec 99.0 8.8E-10 3E-14 108.4 12.1 107 684-795 11-118 (170)
161 1sxj_B Activator 1 37 kDa subu 99.0 2E-09 6.7E-14 118.0 13.3 185 193-395 17-209 (323)
162 3sb4_A Hypothetical leucine ri 99.0 9.3E-10 3.2E-14 121.0 10.2 233 560-808 75-327 (329)
163 1iqp_A RFCS; clamp loader, ext 98.9 8.8E-09 3E-13 113.0 16.2 186 192-395 20-211 (327)
164 4fdw_A Leucine rich hypothetic 98.9 3.2E-08 1.1E-12 111.3 19.8 146 657-812 202-355 (401)
165 3un9_A NLR family member X1; l 98.9 8.9E-11 3E-15 130.9 -2.6 158 657-814 71-251 (372)
166 4fdw_A Leucine rich hypothetic 98.9 5.6E-08 1.9E-12 109.3 19.1 232 544-801 125-368 (401)
167 1hqc_A RUVB; extended AAA-ATPa 98.8 1.9E-07 6.5E-12 102.2 22.7 262 193-495 8-310 (324)
168 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.3E-13 112.9 10.2 102 663-792 13-116 (347)
169 3un9_A NLR family member X1; l 98.7 4E-10 1.4E-14 125.6 -3.1 63 731-793 182-253 (372)
170 2ifg_A High affinity nerve gro 98.7 2.4E-08 8E-13 110.6 11.1 102 710-815 13-116 (347)
171 1jr3_A DNA polymerase III subu 98.7 1.5E-07 5E-12 105.4 15.5 192 193-396 12-221 (373)
172 2chq_A Replication factor C sm 98.6 2.2E-07 7.5E-12 101.4 14.5 184 192-394 12-202 (319)
173 1sxj_D Activator 1 41 kDa subu 98.5 5.5E-06 1.9E-10 91.6 22.2 195 192-394 32-233 (353)
174 1jbk_A CLPB protein; beta barr 98.5 3.9E-07 1.3E-11 91.0 11.5 151 193-360 18-194 (195)
175 2ra8_A Uncharacterized protein 98.5 2E-08 6.7E-13 111.0 1.9 62 731-792 251-320 (362)
176 3h4m_A Proteasome-activating n 98.5 1.5E-06 5.3E-11 93.0 16.5 180 193-394 13-229 (285)
177 3pfi_A Holliday junction ATP-d 98.5 3.6E-06 1.2E-10 92.5 19.6 251 193-483 25-313 (338)
178 3bos_A Putative DNA replicatio 98.5 2E-07 6.7E-12 97.1 8.9 173 195-395 26-216 (242)
179 2ra8_A Uncharacterized protein 98.5 4.4E-08 1.5E-12 108.1 3.4 158 652-812 133-317 (362)
180 1sxj_A Activator 1 95 kDa subu 98.5 1.1E-06 3.8E-11 102.3 15.0 192 192-395 34-252 (516)
181 3d8b_A Fidgetin-like protein 1 98.4 2.5E-06 8.6E-11 94.3 16.7 202 172-397 62-296 (357)
182 3te6_A Regulatory protein SIR3 98.4 1.6E-06 5.5E-11 92.9 14.5 162 198-364 21-211 (318)
183 2z4s_A Chromosomal replication 98.4 1.3E-06 4.3E-11 99.4 12.3 181 196-393 104-303 (440)
184 3eie_A Vacuolar protein sortin 98.4 9.5E-06 3.3E-10 88.3 18.2 176 192-388 13-219 (322)
185 4fs7_A Uncharacterized protein 98.3 1.6E-05 5.6E-10 89.3 20.3 63 544-610 60-126 (394)
186 1d2n_A N-ethylmaleimide-sensit 98.3 9.7E-06 3.3E-10 86.0 17.3 169 197-388 33-229 (272)
187 4fs7_A Uncharacterized protein 98.3 1.6E-05 5.4E-10 89.4 19.9 124 677-809 248-373 (394)
188 2qz4_A Paraplegin; AAA+, SPG7, 98.3 2.1E-05 7.2E-10 82.8 19.6 175 196-390 5-215 (262)
189 1sxj_E Activator 1 40 kDa subu 98.3 3.9E-06 1.3E-10 92.9 14.2 196 192-393 9-234 (354)
190 1l8q_A Chromosomal replication 98.3 9.1E-06 3.1E-10 88.7 15.8 178 195-391 9-203 (324)
191 3b9p_A CG5977-PA, isoform A; A 98.3 1.6E-05 5.4E-10 85.6 17.2 195 180-395 3-232 (297)
192 3syl_A Protein CBBX; photosynt 98.3 1.1E-05 3.9E-10 87.2 16.1 146 198-364 32-217 (309)
193 3uk6_A RUVB-like 2; hexameric 98.3 1.2E-05 3.9E-10 89.6 16.3 196 196-395 43-302 (368)
194 2qp9_X Vacuolar protein sortin 98.3 2.2E-05 7.6E-10 86.5 18.3 182 193-395 47-260 (355)
195 1xwi_A SKD1 protein; VPS4B, AA 98.2 3.5E-05 1.2E-09 83.7 18.8 174 195-389 10-215 (322)
196 3u61_B DNA polymerase accessor 98.2 1.7E-05 5.7E-10 86.6 16.3 178 193-391 22-211 (324)
197 3pvs_A Replication-associated 98.2 1.1E-05 3.6E-10 91.6 14.5 177 193-393 22-212 (447)
198 3vfd_A Spastin; ATPase, microt 98.2 2.9E-05 1E-09 86.9 18.0 183 192-395 110-325 (389)
199 3cf0_A Transitional endoplasmi 98.2 3.5E-05 1.2E-09 82.9 17.6 152 195-364 13-199 (301)
200 2p65_A Hypothetical protein PF 98.2 7.4E-06 2.5E-10 81.1 11.3 51 194-246 19-69 (187)
201 2zan_A Vacuolar protein sortin 98.1 3.7E-05 1.3E-09 87.4 17.7 183 193-394 130-343 (444)
202 4gt6_A Cell surface protein; l 98.1 0.00015 5.2E-09 81.3 21.0 76 731-809 287-364 (394)
203 4gt6_A Cell surface protein; l 98.1 0.00016 5.6E-09 81.0 21.0 57 752-809 261-318 (394)
204 1a5t_A Delta prime, HOLB; zinc 98.0 0.00013 4.4E-09 79.7 18.6 172 203-395 8-204 (334)
205 1sxj_C Activator 1 40 kDa subu 98.0 0.00026 8.8E-09 77.6 20.6 183 193-392 21-208 (340)
206 1qvr_A CLPB protein; coiled co 97.9 3.9E-05 1.3E-09 94.9 13.2 151 193-363 166-344 (854)
207 2w58_A DNAI, primosome compone 97.9 4.4E-05 1.5E-09 76.8 11.0 123 195-334 23-159 (202)
208 4b4t_J 26S protease regulatory 97.9 0.00035 1.2E-08 76.7 18.5 172 195-389 146-354 (405)
209 3n70_A Transport activator; si 97.9 2.9E-05 1E-09 73.5 8.8 112 198-334 2-116 (145)
210 1in4_A RUVB, holliday junction 97.9 0.00045 1.5E-08 75.4 19.5 174 193-393 21-220 (334)
211 4h09_A Hypothetical leucine ri 97.8 0.00052 1.8E-08 76.4 19.6 93 731-825 239-343 (379)
212 3pxg_A Negative regulator of g 97.8 0.00013 4.3E-09 83.6 14.7 149 193-364 176-338 (468)
213 3hu3_A Transitional endoplasmi 97.8 0.0001 3.5E-09 84.3 13.7 152 196-364 203-385 (489)
214 3ec2_A DNA replication protein 97.8 6.4E-05 2.2E-09 74.1 10.4 116 204-334 21-143 (180)
215 1io0_A Tropomodulin; LRR prote 97.8 4.4E-06 1.5E-10 82.9 1.8 56 756-811 93-160 (185)
216 4b4t_L 26S protease subunit RP 97.8 0.00039 1.3E-08 77.6 17.5 173 194-389 178-387 (437)
217 1io0_A Tropomodulin; LRR prote 97.8 6.9E-06 2.3E-10 81.5 2.8 119 674-792 28-164 (185)
218 4b4t_M 26S protease regulatory 97.8 0.00018 6.2E-09 80.2 14.4 173 193-388 177-386 (434)
219 1lv7_A FTSH; alpha/beta domain 97.8 0.00027 9.3E-09 74.0 15.0 153 193-364 8-195 (257)
220 4b4t_I 26S protease regulatory 97.7 0.00054 1.8E-08 75.5 16.3 173 194-389 179-388 (437)
221 4b4t_H 26S protease regulatory 97.7 0.00068 2.3E-08 75.4 17.3 171 196-389 208-415 (467)
222 1ofh_A ATP-dependent HSL prote 97.7 0.00018 6.1E-09 77.7 12.7 49 197-245 15-75 (310)
223 4fcw_A Chaperone protein CLPB; 97.7 0.0002 7E-09 77.3 12.0 58 197-254 17-81 (311)
224 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00045 1.5E-08 84.5 16.3 153 193-364 182-362 (758)
225 4b4t_K 26S protease regulatory 97.6 0.00073 2.5E-08 75.3 15.8 171 195-388 170-378 (428)
226 3rw6_A Nuclear RNA export fact 97.6 3.8E-05 1.3E-09 80.2 5.0 76 732-808 170-257 (267)
227 2gno_A DNA polymerase III, gam 97.6 0.00056 1.9E-08 73.2 13.6 146 201-364 1-152 (305)
228 2bjv_A PSP operon transcriptio 97.5 0.00019 6.5E-09 75.6 9.2 49 197-245 6-54 (265)
229 3pxi_A Negative regulator of g 97.5 0.00065 2.2E-08 83.0 15.0 149 193-364 176-338 (758)
230 2ce7_A Cell division protein F 97.5 0.0018 6.3E-08 73.3 17.5 172 196-389 15-221 (476)
231 2r62_A Cell division protease 97.5 3.9E-05 1.3E-09 81.1 2.8 154 194-364 8-196 (268)
232 3rw6_A Nuclear RNA export fact 97.4 7.8E-05 2.7E-09 77.8 4.1 63 656-719 168-234 (267)
233 3co5_A Putative two-component 97.4 6.4E-05 2.2E-09 70.9 2.8 47 197-243 4-50 (143)
234 1ojl_A Transcriptional regulat 97.4 0.00035 1.2E-08 75.0 8.8 48 197-244 2-49 (304)
235 2kjq_A DNAA-related protein; s 97.4 0.0003 1E-08 66.7 7.3 36 220-255 36-71 (149)
236 4h09_A Hypothetical leucine ri 97.3 0.0058 2E-07 67.8 18.8 128 676-810 211-341 (379)
237 3e4g_A ATP synthase subunit S, 97.3 0.00013 4.4E-09 70.6 4.3 34 659-692 62-95 (176)
238 2c9o_A RUVB-like 1; hexameric 97.3 0.0021 7.2E-08 73.3 14.3 50 196-245 36-88 (456)
239 1ixz_A ATP-dependent metallopr 97.3 0.0066 2.3E-07 63.1 17.1 152 195-364 14-199 (254)
240 3e4g_A ATP synthase subunit S, 97.2 0.00015 5.1E-09 70.1 3.7 85 733-819 62-154 (176)
241 2qgz_A Helicase loader, putati 97.2 0.0008 2.7E-08 72.3 9.3 51 205-255 136-188 (308)
242 3pxi_A Negative regulator of g 97.2 0.0023 7.8E-08 78.1 14.0 147 197-364 491-675 (758)
243 1iy2_A ATP-dependent metallopr 97.1 0.013 4.4E-07 61.9 17.6 154 193-364 36-223 (278)
244 3cf2_A TER ATPase, transitiona 97.1 0.0033 1.1E-07 75.5 13.7 171 196-389 203-407 (806)
245 3t15_A Ribulose bisphosphate c 97.0 0.0024 8.3E-08 68.0 10.9 30 218-247 34-63 (293)
246 1eiw_A Hypothetical protein MT 97.0 0.0011 3.8E-08 58.4 6.6 71 25-118 3-73 (111)
247 2dhr_A FTSH; AAA+ protein, hex 97.0 0.014 4.8E-07 66.5 17.1 154 194-364 28-214 (499)
248 2x8a_A Nuclear valosin-contain 96.9 0.009 3.1E-07 62.8 14.3 124 223-364 47-191 (274)
249 1um8_A ATP-dependent CLP prote 96.9 0.0047 1.6E-07 68.5 12.6 26 220-245 72-97 (376)
250 3m6a_A ATP-dependent protease 96.7 0.012 4.1E-07 68.4 14.6 158 198-364 82-266 (543)
251 1ypw_A Transitional endoplasmi 96.5 0.0092 3.1E-07 72.8 12.1 150 196-364 203-385 (806)
252 1r6b_X CLPA protein; AAA+, N-t 96.4 0.073 2.5E-06 64.8 19.3 48 197-244 458-512 (758)
253 3dm5_A SRP54, signal recogniti 96.2 0.078 2.7E-06 59.1 16.3 36 219-254 99-134 (443)
254 1qvr_A CLPB protein; coiled co 96.2 0.021 7.2E-07 70.5 12.9 50 197-246 558-614 (854)
255 1g5t_A COB(I)alamin adenosyltr 96.1 0.0037 1.3E-07 61.2 4.2 113 221-334 29-163 (196)
256 2cvh_A DNA repair and recombin 96.0 0.02 6.9E-07 57.7 9.7 44 209-255 9-52 (220)
257 1pgv_A TMD-1, tropomodulin TMD 95.8 0.0042 1.4E-07 61.2 3.2 80 732-811 70-166 (197)
258 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0076 2.6E-07 59.3 4.6 80 732-811 41-135 (197)
259 1zu4_A FTSY; GTPase, signal re 95.7 0.025 8.6E-07 60.7 9.1 36 219-254 104-139 (320)
260 1jr3_D DNA polymerase III, del 95.7 0.062 2.1E-06 58.5 12.5 155 219-394 17-183 (343)
261 2r44_A Uncharacterized protein 95.7 0.0073 2.5E-07 65.6 4.8 48 195-246 25-72 (331)
262 1ye8_A Protein THEP1, hypothet 95.6 0.13 4.5E-06 49.8 13.1 24 222-245 2-25 (178)
263 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.015 5.3E-07 61.5 6.5 24 220-243 123-146 (331)
264 3cf2_A TER ATPase, transitiona 95.5 0.0085 2.9E-07 72.0 5.0 150 197-364 477-661 (806)
265 3hr8_A Protein RECA; alpha and 95.5 0.071 2.4E-06 57.8 11.9 50 206-255 46-96 (356)
266 3rfe_A Platelet glycoprotein I 95.5 0.023 8E-07 52.0 6.8 51 760-812 12-65 (130)
267 1j8m_F SRP54, signal recogniti 95.4 0.047 1.6E-06 57.9 9.8 36 220-255 98-133 (297)
268 1u0j_A DNA replication protein 95.4 0.031 1.1E-06 57.7 8.0 38 206-243 90-127 (267)
269 2b8t_A Thymidine kinase; deoxy 95.3 0.05 1.7E-06 54.8 9.0 106 220-335 12-127 (223)
270 2xxa_A Signal recognition part 95.3 0.091 3.1E-06 58.8 12.0 49 206-254 79-135 (433)
271 1vma_A Cell division protein F 95.3 0.062 2.1E-06 57.1 10.1 51 204-254 82-138 (306)
272 2orw_A Thymidine kinase; TMTK, 95.3 0.0065 2.2E-07 59.7 2.3 108 221-334 4-113 (184)
273 1rz3_A Hypothetical protein rb 95.2 0.029 1E-06 55.8 7.2 45 202-246 3-48 (201)
274 3kl4_A SRP54, signal recogniti 95.0 0.12 4.2E-06 57.5 11.8 36 219-254 96-131 (433)
275 2ehv_A Hypothetical protein PH 95.0 0.098 3.4E-06 53.8 10.6 36 220-255 30-66 (251)
276 3hws_A ATP-dependent CLP prote 94.9 0.016 5.4E-07 63.8 4.5 46 199-244 17-75 (363)
277 3c8u_A Fructokinase; YP_612366 94.9 0.024 8.1E-07 56.9 5.4 39 207-245 9-47 (208)
278 3jvv_A Twitching mobility prot 94.9 0.017 5.8E-07 63.0 4.5 109 221-337 124-234 (356)
279 3e70_C DPA, signal recognition 94.7 0.11 3.6E-06 55.9 10.3 30 218-247 127-156 (328)
280 3bh0_A DNAB-like replicative h 94.7 0.076 2.6E-06 56.9 9.0 69 201-276 50-118 (315)
281 2q6t_A DNAB replication FORK h 94.7 0.19 6.7E-06 56.6 12.8 69 202-277 183-252 (444)
282 3io5_A Recombination and repai 94.6 0.14 4.8E-06 54.0 10.4 34 222-255 30-65 (333)
283 1qhx_A CPT, protein (chloramph 94.6 0.013 4.3E-07 57.1 2.5 25 221-245 4-28 (178)
284 2eyu_A Twitching motility prot 94.6 0.039 1.3E-06 57.4 6.1 109 219-336 24-135 (261)
285 1xp8_A RECA protein, recombina 94.5 0.15 5.1E-06 55.6 11.0 51 205-255 58-109 (366)
286 3hyn_A Putative signal transdu 94.5 0.11 3.6E-06 49.2 8.1 97 34-135 27-133 (189)
287 1odf_A YGR205W, hypothetical 3 94.5 0.04 1.4E-06 58.2 6.0 30 217-246 28-57 (290)
288 2v3c_C SRP54, signal recogniti 94.4 0.089 3E-06 58.9 8.9 36 219-254 98-133 (432)
289 1u94_A RECA protein, recombina 94.3 0.14 4.9E-06 55.6 10.2 50 206-255 48-98 (356)
290 3kb2_A SPBC2 prophage-derived 94.3 0.022 7.5E-07 54.9 3.2 25 221-245 2-26 (173)
291 2ga8_A Hypothetical 39.9 kDa p 94.2 0.038 1.3E-06 59.4 5.2 48 201-248 3-52 (359)
292 1g8p_A Magnesium-chelatase 38 94.1 0.026 8.9E-07 61.6 3.8 51 193-245 20-70 (350)
293 3sr0_A Adenylate kinase; phosp 94.1 0.069 2.4E-06 53.2 6.5 23 222-244 2-24 (206)
294 3b9q_A Chloroplast SRP recepto 94.1 0.13 4.6E-06 54.5 9.1 35 219-254 99-133 (302)
295 2j37_W Signal recognition part 94.1 0.083 2.9E-06 60.1 7.9 38 218-255 99-136 (504)
296 3trf_A Shikimate kinase, SK; a 94.0 0.023 7.9E-07 55.6 2.9 24 221-244 6-29 (185)
297 3nbx_X ATPase RAVA; AAA+ ATPas 94.0 0.049 1.7E-06 62.1 5.9 44 197-244 22-65 (500)
298 3vaa_A Shikimate kinase, SK; s 94.0 0.024 8.3E-07 56.3 3.0 25 220-244 25-49 (199)
299 1nks_A Adenylate kinase; therm 94.0 0.049 1.7E-06 53.5 5.1 26 221-246 2-27 (194)
300 3uie_A Adenylyl-sulfate kinase 93.9 0.055 1.9E-06 53.8 5.4 27 219-245 24-50 (200)
301 1rj9_A FTSY, signal recognitio 93.9 0.12 3.9E-06 55.0 8.2 36 219-255 101-136 (304)
302 4a1f_A DNAB helicase, replicat 93.8 0.13 4.3E-06 55.4 8.4 71 200-277 27-97 (338)
303 2og2_A Putative signal recogni 93.7 0.17 5.9E-06 54.9 9.2 35 219-254 156-190 (359)
304 1ly1_A Polynucleotide kinase; 93.7 0.035 1.2E-06 53.9 3.4 22 221-242 3-24 (181)
305 3lw7_A Adenylate kinase relate 93.7 0.029 9.8E-07 54.2 2.8 20 221-240 2-21 (179)
306 3tlx_A Adenylate kinase 2; str 93.6 0.053 1.8E-06 55.8 4.8 27 218-244 27-53 (243)
307 2yhs_A FTSY, cell division pro 93.6 0.25 8.6E-06 55.5 10.4 36 219-255 292-327 (503)
308 3fwy_A Light-independent proto 93.6 0.062 2.1E-06 57.5 5.3 38 218-255 46-83 (314)
309 1zuh_A Shikimate kinase; alpha 93.6 0.034 1.2E-06 53.4 3.1 27 219-245 6-32 (168)
310 2yvu_A Probable adenylyl-sulfa 93.5 0.067 2.3E-06 52.3 5.2 29 219-247 12-40 (186)
311 2rhm_A Putative kinase; P-loop 93.5 0.048 1.6E-06 53.6 4.2 25 220-244 5-29 (193)
312 2px0_A Flagellar biosynthesis 93.5 0.15 5E-06 54.0 8.1 36 219-254 104-140 (296)
313 3ice_A Transcription terminati 93.4 0.038 1.3E-06 59.7 3.3 28 221-248 175-202 (422)
314 3bgw_A DNAB-like replicative h 93.4 0.17 5.9E-06 56.9 8.9 54 201-255 179-232 (444)
315 1ex7_A Guanylate kinase; subst 93.3 0.022 7.6E-07 55.7 1.2 28 221-248 2-29 (186)
316 1xjc_A MOBB protein homolog; s 93.3 0.07 2.4E-06 51.1 4.6 34 219-252 3-37 (169)
317 2ewv_A Twitching motility prot 93.3 0.27 9.4E-06 53.8 10.1 109 219-335 135-245 (372)
318 3iij_A Coilin-interacting nucl 93.2 0.031 1.1E-06 54.4 2.2 25 220-244 11-35 (180)
319 1kht_A Adenylate kinase; phosp 93.1 0.05 1.7E-06 53.4 3.6 26 221-246 4-29 (192)
320 1kag_A SKI, shikimate kinase I 93.1 0.035 1.2E-06 53.5 2.3 24 221-244 5-28 (173)
321 1tue_A Replication protein E1; 93.1 0.06 2E-06 52.9 3.9 44 202-246 41-84 (212)
322 1zp6_A Hypothetical protein AT 93.1 0.046 1.6E-06 53.7 3.2 24 220-243 9-32 (191)
323 2jaq_A Deoxyguanosine kinase; 93.0 0.045 1.5E-06 54.3 3.1 24 222-245 2-25 (205)
324 2ze6_A Isopentenyl transferase 93.0 0.05 1.7E-06 56.3 3.5 24 221-244 2-25 (253)
325 1sky_E F1-ATPase, F1-ATP synth 93.0 0.1 3.5E-06 58.3 6.1 30 222-251 153-182 (473)
326 1via_A Shikimate kinase; struc 93.0 0.047 1.6E-06 52.9 3.0 24 222-245 6-29 (175)
327 1puj_A YLQF, conserved hypothe 92.9 0.59 2E-05 49.0 11.6 36 69-105 13-48 (282)
328 3t61_A Gluconokinase; PSI-biol 92.9 0.046 1.6E-06 54.4 2.9 25 220-244 18-42 (202)
329 1tev_A UMP-CMP kinase; ploop, 92.9 0.061 2.1E-06 52.9 3.7 25 220-244 3-27 (196)
330 3p32_A Probable GTPase RV1496/ 92.8 0.16 5.3E-06 55.5 7.3 41 207-247 66-106 (355)
331 2plr_A DTMP kinase, probable t 92.8 0.093 3.2E-06 52.4 5.1 28 221-248 5-32 (213)
332 1g41_A Heat shock protein HSLU 92.8 0.079 2.7E-06 59.1 4.8 50 197-246 15-76 (444)
333 2c95_A Adenylate kinase 1; tra 92.8 0.05 1.7E-06 53.6 3.0 25 220-244 9-33 (196)
334 1knq_A Gluconate kinase; ALFA/ 92.7 0.066 2.3E-06 51.7 3.7 25 220-244 8-32 (175)
335 1nn5_A Similar to deoxythymidy 92.7 0.086 2.9E-06 52.8 4.7 29 220-248 9-37 (215)
336 1uj2_A Uridine-cytidine kinase 92.7 0.06 2.1E-06 55.7 3.5 28 218-245 20-47 (252)
337 1ukz_A Uridylate kinase; trans 92.6 0.076 2.6E-06 52.8 4.1 27 218-244 13-39 (203)
338 2vli_A Antibiotic resistance p 92.6 0.046 1.6E-06 53.2 2.4 25 221-245 6-30 (183)
339 1e6c_A Shikimate kinase; phosp 92.6 0.045 1.6E-06 52.7 2.3 25 221-245 3-27 (173)
340 1gvn_B Zeta; postsegregational 92.6 0.1 3.5E-06 55.1 5.2 27 218-244 31-57 (287)
341 1kgd_A CASK, peripheral plasma 92.6 0.059 2E-06 52.5 3.1 25 221-245 6-30 (180)
342 2pt5_A Shikimate kinase, SK; a 92.5 0.066 2.2E-06 51.3 3.4 24 222-245 2-25 (168)
343 3cm0_A Adenylate kinase; ATP-b 92.5 0.067 2.3E-06 52.2 3.5 25 220-244 4-28 (186)
344 2iyv_A Shikimate kinase, SK; t 92.5 0.062 2.1E-06 52.4 3.2 24 222-245 4-27 (184)
345 2pjz_A Hypothetical protein ST 92.5 0.55 1.9E-05 48.6 10.5 23 221-243 31-53 (263)
346 1y63_A LMAJ004144AAA protein; 92.4 0.072 2.5E-06 52.1 3.5 24 220-243 10-33 (184)
347 4eun_A Thermoresistant glucoki 92.4 0.07 2.4E-06 52.9 3.5 26 219-244 28-53 (200)
348 1uf9_A TT1252 protein; P-loop, 92.4 0.074 2.5E-06 52.7 3.6 26 218-243 6-31 (203)
349 3rfe_A Platelet glycoprotein I 92.4 0.22 7.7E-06 45.3 6.6 37 756-792 31-68 (130)
350 1qf9_A UMP/CMP kinase, protein 92.4 0.077 2.6E-06 52.0 3.7 25 220-244 6-30 (194)
351 2bwj_A Adenylate kinase 5; pho 92.3 0.068 2.3E-06 52.8 3.3 25 221-245 13-37 (199)
352 2cdn_A Adenylate kinase; phosp 92.2 0.08 2.7E-06 52.5 3.7 25 220-244 20-44 (201)
353 2ffh_A Protein (FFH); SRP54, s 92.2 0.66 2.3E-05 51.4 11.4 36 219-254 97-132 (425)
354 3a4m_A L-seryl-tRNA(SEC) kinas 92.2 0.086 2.9E-06 54.8 4.0 26 220-245 4-29 (260)
355 3tqc_A Pantothenate kinase; bi 92.2 0.12 4.2E-06 55.1 5.2 47 199-245 69-117 (321)
356 2r6a_A DNAB helicase, replicat 92.1 0.38 1.3E-05 54.4 9.6 48 207-255 191-239 (454)
357 1cke_A CK, MSSA, protein (cyti 92.1 0.079 2.7E-06 53.7 3.5 24 221-244 6-29 (227)
358 2bdt_A BH3686; alpha-beta prot 92.1 0.08 2.7E-06 51.9 3.4 31 221-255 3-33 (189)
359 2qor_A Guanylate kinase; phosp 92.0 0.061 2.1E-06 53.6 2.5 26 220-245 12-37 (204)
360 3cmu_A Protein RECA, recombina 92.0 0.6 2E-05 61.3 12.1 48 208-255 1414-1462(2050)
361 1aky_A Adenylate kinase; ATP:A 92.0 0.069 2.4E-06 53.9 2.9 25 220-244 4-28 (220)
362 2wwf_A Thymidilate kinase, put 92.0 0.087 3E-06 52.6 3.6 28 220-247 10-37 (212)
363 2pbr_A DTMP kinase, thymidylat 91.9 0.085 2.9E-06 51.8 3.5 25 222-246 2-26 (195)
364 3umf_A Adenylate kinase; rossm 91.9 0.1 3.5E-06 52.3 4.0 27 218-244 27-53 (217)
365 3a00_A Guanylate kinase, GMP k 91.9 0.058 2E-06 52.9 2.1 28 221-248 2-29 (186)
366 3tau_A Guanylate kinase, GMP k 91.9 0.078 2.7E-06 53.0 3.1 26 220-245 8-33 (208)
367 2dr3_A UPF0273 protein PH0284; 91.8 0.12 4.1E-06 52.9 4.6 36 220-255 23-58 (247)
368 2ck3_D ATP synthase subunit be 91.8 0.23 7.9E-06 55.3 7.0 52 221-275 154-206 (482)
369 2if2_A Dephospho-COA kinase; a 91.8 0.08 2.7E-06 52.6 3.1 21 222-242 3-23 (204)
370 3asz_A Uridine kinase; cytidin 91.8 0.1 3.5E-06 52.1 3.9 27 219-245 5-31 (211)
371 2qt1_A Nicotinamide riboside k 91.8 0.09 3.1E-06 52.4 3.5 26 218-243 19-44 (207)
372 3upu_A ATP-dependent DNA helic 91.8 0.72 2.5E-05 52.2 11.4 33 222-254 47-80 (459)
373 2pt7_A CAG-ALFA; ATPase, prote 91.8 0.2 6.7E-06 54.0 6.3 104 221-334 172-275 (330)
374 2wsm_A Hydrogenase expression/ 91.7 0.18 6.1E-06 50.7 5.6 44 203-248 15-58 (221)
375 2pez_A Bifunctional 3'-phospho 91.6 0.11 3.8E-06 50.3 3.9 27 220-246 5-31 (179)
376 2grj_A Dephospho-COA kinase; T 91.6 0.12 4E-06 50.9 4.0 26 219-244 11-36 (192)
377 2w0m_A SSO2452; RECA, SSPF, un 91.6 0.13 4.4E-06 52.2 4.5 35 221-255 24-58 (235)
378 2hf9_A Probable hydrogenase ni 91.6 0.29 9.8E-06 49.3 7.1 40 206-247 26-65 (226)
379 3tr0_A Guanylate kinase, GMP k 91.6 0.089 3E-06 52.2 3.1 24 221-244 8-31 (205)
380 3ney_A 55 kDa erythrocyte memb 91.5 0.077 2.6E-06 52.3 2.5 27 219-245 18-44 (197)
381 2z0h_A DTMP kinase, thymidylat 91.5 0.1 3.5E-06 51.3 3.5 25 222-246 2-26 (197)
382 2p5t_B PEZT; postsegregational 91.4 0.15 5.2E-06 52.6 4.8 27 219-245 31-57 (253)
383 1fx0_B ATP synthase beta chain 91.4 0.27 9.4E-06 55.0 7.0 85 221-308 166-278 (498)
384 2j41_A Guanylate kinase; GMP, 91.4 0.096 3.3E-06 52.1 3.1 24 221-244 7-30 (207)
385 3fb4_A Adenylate kinase; psych 91.3 0.11 3.7E-06 52.2 3.5 23 222-244 2-24 (216)
386 1jjv_A Dephospho-COA kinase; P 91.3 0.099 3.4E-06 52.1 3.2 22 221-242 3-24 (206)
387 1xx6_A Thymidine kinase; NESG, 91.3 0.26 9E-06 48.2 6.2 106 220-334 8-118 (191)
388 3k1j_A LON protease, ATP-depen 91.3 0.11 3.7E-06 61.3 3.9 51 193-247 37-87 (604)
389 4a74_A DNA repair and recombin 91.2 0.2 6.7E-06 50.7 5.4 47 209-255 14-66 (231)
390 1zak_A Adenylate kinase; ATP:A 91.2 0.081 2.8E-06 53.5 2.4 26 220-245 5-30 (222)
391 2bbw_A Adenylate kinase 4, AK4 91.2 0.11 3.8E-06 53.4 3.5 25 220-244 27-51 (246)
392 1m7g_A Adenylylsulfate kinase; 91.0 0.15 5E-06 51.1 4.1 27 219-245 24-50 (211)
393 2j9r_A Thymidine kinase; TK1, 91.0 0.39 1.3E-05 47.6 7.0 108 219-335 27-139 (214)
394 1zd8_A GTP:AMP phosphotransfer 91.0 0.1 3.6E-06 52.8 3.0 25 220-244 7-31 (227)
395 3nwj_A ATSK2; P loop, shikimat 90.9 0.088 3E-06 54.2 2.3 25 221-245 49-73 (250)
396 1a7j_A Phosphoribulokinase; tr 90.9 0.1 3.5E-06 55.1 2.9 27 219-245 4-30 (290)
397 1n0w_A DNA repair protein RAD5 90.9 0.16 5.6E-06 51.8 4.4 48 208-255 12-65 (243)
398 4e22_A Cytidylate kinase; P-lo 90.8 0.11 3.7E-06 53.8 2.9 25 220-244 27-51 (252)
399 3end_A Light-independent proto 90.8 0.21 7.1E-06 53.3 5.3 38 218-255 39-76 (307)
400 1gtv_A TMK, thymidylate kinase 90.8 0.069 2.4E-06 53.5 1.4 25 222-246 2-26 (214)
401 2zr9_A Protein RECA, recombina 90.8 0.17 5.9E-06 54.9 4.7 50 206-255 46-96 (349)
402 3dl0_A Adenylate kinase; phosp 90.8 0.11 3.9E-06 52.0 3.0 23 222-244 2-24 (216)
403 3be4_A Adenylate kinase; malar 90.7 0.11 3.8E-06 52.3 2.9 24 221-244 6-29 (217)
404 2f6r_A COA synthase, bifunctio 90.7 0.13 4.6E-06 54.0 3.6 25 218-242 73-97 (281)
405 4gp7_A Metallophosphoesterase; 90.7 0.11 3.8E-06 50.0 2.7 21 220-240 9-29 (171)
406 3ake_A Cytidylate kinase; CMP 90.6 0.13 4.6E-06 51.0 3.4 24 222-245 4-27 (208)
407 3zvl_A Bifunctional polynucleo 90.5 0.44 1.5E-05 53.1 7.8 27 218-244 256-282 (416)
408 2r8r_A Sensor protein; KDPD, P 90.5 0.22 7.6E-06 49.8 4.7 27 221-247 7-33 (228)
409 1lvg_A Guanylate kinase, GMP k 90.5 0.1 3.4E-06 51.7 2.2 25 221-245 5-29 (198)
410 3d3q_A TRNA delta(2)-isopenten 90.5 0.14 4.7E-06 54.9 3.4 25 221-245 8-32 (340)
411 3r20_A Cytidylate kinase; stru 90.4 0.14 4.7E-06 51.9 3.3 25 220-244 9-33 (233)
412 1cp2_A CP2, nitrogenase iron p 90.4 0.25 8.5E-06 51.4 5.4 35 221-255 2-36 (269)
413 2jeo_A Uridine-cytidine kinase 90.4 0.17 5.7E-06 52.0 4.0 26 219-244 24-49 (245)
414 3aez_A Pantothenate kinase; tr 90.3 0.18 6E-06 53.9 4.1 29 218-246 88-116 (312)
415 2p67_A LAO/AO transport system 90.2 0.33 1.1E-05 52.6 6.3 31 217-247 53-83 (341)
416 1yrb_A ATP(GTP)binding protein 90.2 0.29 1E-05 50.6 5.7 27 219-245 13-39 (262)
417 1vht_A Dephospho-COA kinase; s 90.2 0.17 5.7E-06 50.9 3.6 23 220-242 4-26 (218)
418 1np6_A Molybdopterin-guanine d 90.1 0.25 8.5E-06 47.6 4.6 27 220-246 6-32 (174)
419 2v54_A DTMP kinase, thymidylat 90.0 0.15 5.1E-06 50.5 3.2 24 221-244 5-28 (204)
420 1e4v_A Adenylate kinase; trans 90.0 0.16 5.6E-06 50.8 3.5 23 222-244 2-24 (214)
421 2xb4_A Adenylate kinase; ATP-b 90.0 0.16 5.6E-06 51.2 3.5 23 222-244 2-24 (223)
422 3e1s_A Exodeoxyribonuclease V, 90.0 1 3.5E-05 52.3 10.6 34 221-254 205-238 (574)
423 1ak2_A Adenylate kinase isoenz 90.0 0.16 5.4E-06 51.8 3.3 25 221-245 17-41 (233)
424 1v5w_A DMC1, meiotic recombina 89.9 0.64 2.2E-05 50.3 8.2 48 208-255 110-163 (343)
425 3crm_A TRNA delta(2)-isopenten 89.9 0.16 5.4E-06 54.1 3.2 24 221-244 6-29 (323)
426 1htw_A HI0065; nucleotide-bind 89.9 0.29 9.8E-06 46.3 4.8 27 218-244 31-57 (158)
427 2afh_E Nitrogenase iron protei 89.8 0.29 9.8E-06 51.6 5.3 36 220-255 2-37 (289)
428 1znw_A Guanylate kinase, GMP k 89.6 0.16 5.6E-06 50.5 3.0 24 221-244 21-44 (207)
429 3hjn_A DTMP kinase, thymidylat 89.6 0.83 2.8E-05 45.0 8.1 34 222-255 2-35 (197)
430 3a8t_A Adenylate isopentenyltr 89.5 0.11 3.9E-06 55.4 1.8 25 220-244 40-64 (339)
431 1q57_A DNA primase/helicase; d 89.5 1.4 4.8E-05 50.5 11.2 57 216-278 238-295 (503)
432 1svm_A Large T antigen; AAA+ f 89.4 0.27 9.2E-06 53.8 4.8 33 212-244 161-193 (377)
433 1ls1_A Signal recognition part 89.4 0.33 1.1E-05 51.3 5.3 36 219-254 97-132 (295)
434 1cr0_A DNA primase/helicase; R 89.4 0.29 1E-05 51.7 5.0 36 220-255 35-71 (296)
435 3exa_A TRNA delta(2)-isopenten 89.3 0.17 5.7E-06 53.4 2.9 25 220-244 3-27 (322)
436 2z43_A DNA repair and recombin 89.3 0.42 1.4E-05 51.3 6.2 48 208-255 95-148 (324)
437 3foz_A TRNA delta(2)-isopenten 89.3 0.22 7.4E-06 52.5 3.7 26 219-244 9-34 (316)
438 3cmw_A Protein RECA, recombina 89.1 0.63 2.2E-05 60.3 8.5 55 201-255 712-767 (1706)
439 1z6g_A Guanylate kinase; struc 89.1 0.16 5.6E-06 51.0 2.6 24 221-244 24-47 (218)
440 2i3b_A HCR-ntpase, human cance 88.9 0.2 6.8E-06 49.1 3.0 24 222-245 3-26 (189)
441 2zts_A Putative uncharacterize 88.9 0.37 1.3E-05 49.3 5.2 36 220-255 30-66 (251)
442 2qmh_A HPR kinase/phosphorylas 88.8 0.18 6.3E-06 49.2 2.6 23 221-243 35-57 (205)
443 3cnl_A YLQF, putative uncharac 88.7 0.57 2E-05 48.5 6.4 29 69-97 11-39 (262)
444 4hlc_A DTMP kinase, thymidylat 88.6 0.37 1.3E-05 47.9 4.7 30 221-250 3-32 (205)
445 3lnc_A Guanylate kinase, GMP k 88.6 0.17 5.9E-06 51.3 2.4 24 221-244 28-52 (231)
446 1ltq_A Polynucleotide kinase; 88.6 0.23 7.8E-06 52.7 3.4 23 221-243 3-25 (301)
447 1s96_A Guanylate kinase, GMP k 88.5 0.21 7.4E-06 50.2 3.0 26 220-245 16-41 (219)
448 1sq5_A Pantothenate kinase; P- 88.5 0.25 8.6E-06 52.6 3.7 28 218-245 78-105 (308)
449 1g8f_A Sulfate adenylyltransfe 88.4 0.34 1.2E-05 55.1 4.8 28 219-246 394-421 (511)
450 1nlf_A Regulatory protein REPA 88.4 0.41 1.4E-05 50.2 5.2 26 221-246 31-56 (279)
451 4edh_A DTMP kinase, thymidylat 88.4 0.72 2.5E-05 46.0 6.7 28 220-247 6-33 (213)
452 2f1r_A Molybdopterin-guanine d 88.3 0.14 4.7E-06 49.3 1.3 26 221-246 3-28 (171)
453 1q3t_A Cytidylate kinase; nucl 88.2 0.26 9E-06 50.2 3.5 26 219-244 15-40 (236)
454 4dzz_A Plasmid partitioning pr 88.2 0.41 1.4E-05 47.3 4.9 35 221-255 2-37 (206)
455 4eaq_A DTMP kinase, thymidylat 88.0 0.3 1E-05 49.5 3.7 28 219-246 25-52 (229)
456 2ocp_A DGK, deoxyguanosine kin 87.9 0.27 9.1E-06 50.3 3.3 26 220-245 2-27 (241)
457 3b85_A Phosphate starvation-in 87.9 0.25 8.7E-06 49.2 3.0 23 221-243 23-45 (208)
458 3eph_A TRNA isopentenyltransfe 87.8 0.3 1E-05 53.4 3.7 25 221-245 3-27 (409)
459 2axn_A 6-phosphofructo-2-kinas 87.6 0.48 1.6E-05 54.4 5.5 31 219-249 34-64 (520)
460 2ged_A SR-beta, signal recogni 87.4 0.43 1.5E-05 46.5 4.4 24 219-242 47-70 (193)
461 3fkq_A NTRC-like two-domain pr 87.3 0.53 1.8E-05 51.6 5.5 38 218-255 141-179 (373)
462 1ypw_A Transitional endoplasmi 87.2 0.25 8.5E-06 60.2 2.9 53 196-248 476-539 (806)
463 3fdi_A Uncharacterized protein 87.2 0.3 1E-05 48.3 3.1 25 221-245 7-31 (201)
464 2qm8_A GTPase/ATPase; G protei 87.2 0.81 2.8E-05 49.3 6.7 29 218-246 53-81 (337)
465 1ny5_A Transcriptional regulat 87.1 1.2 4.1E-05 49.0 8.2 46 197-243 137-183 (387)
466 2dyk_A GTP-binding protein; GT 87.1 0.35 1.2E-05 45.3 3.4 22 221-242 2-23 (161)
467 3vr4_D V-type sodium ATPase su 87.1 0.45 1.5E-05 52.7 4.6 83 222-307 153-259 (465)
468 1pzn_A RAD51, DNA repair and r 87.0 0.37 1.3E-05 52.3 3.9 37 208-244 119-155 (349)
469 1oix_A RAS-related protein RAB 87.0 0.39 1.3E-05 47.0 3.7 25 219-243 28-52 (191)
470 3cmu_A Protein RECA, recombina 87.0 1.1 3.9E-05 58.7 8.9 57 199-255 361-418 (2050)
471 3ug7_A Arsenical pump-driving 86.8 0.77 2.6E-05 49.8 6.3 39 217-255 23-61 (349)
472 2i1q_A DNA repair and recombin 86.7 0.78 2.7E-05 49.1 6.3 38 207-244 85-122 (322)
473 2onk_A Molybdate/tungstate ABC 86.7 0.32 1.1E-05 49.7 3.0 22 221-242 25-46 (240)
474 2wji_A Ferrous iron transport 86.5 0.4 1.4E-05 45.5 3.5 22 221-242 4-25 (165)
475 3zq6_A Putative arsenical pump 86.5 0.68 2.3E-05 49.6 5.7 36 220-255 14-49 (324)
476 2pcj_A ABC transporter, lipopr 86.5 0.28 9.6E-06 49.5 2.4 22 221-242 31-52 (224)
477 3v9p_A DTMP kinase, thymidylat 86.4 0.79 2.7E-05 46.2 5.7 28 220-247 25-52 (227)
478 3tif_A Uncharacterized ABC tra 86.4 0.29 9.8E-06 49.9 2.5 22 221-242 32-53 (235)
479 3bfv_A CAPA1, CAPB2, membrane 86.2 1 3.6E-05 46.8 6.7 38 218-255 80-118 (271)
480 3io3_A DEHA2D07832P; chaperone 86.2 0.61 2.1E-05 50.4 5.1 38 218-255 16-55 (348)
481 3ea0_A ATPase, para family; al 86.2 0.7 2.4E-05 47.1 5.4 37 219-255 3-41 (245)
482 2f9l_A RAB11B, member RAS onco 86.2 0.35 1.2E-05 47.6 2.9 23 220-242 5-27 (199)
483 2zej_A Dardarin, leucine-rich 86.0 0.33 1.1E-05 47.1 2.6 21 222-242 4-24 (184)
484 2cbz_A Multidrug resistance-as 85.9 0.31 1.1E-05 49.6 2.5 59 288-348 137-201 (237)
485 3kjh_A CO dehydrogenase/acetyl 85.8 0.42 1.4E-05 48.9 3.4 33 223-255 3-35 (254)
486 3lv8_A DTMP kinase, thymidylat 85.7 1 3.4E-05 45.7 6.1 35 220-254 27-62 (236)
487 2ce2_X GTPase HRAS; signaling 85.7 0.39 1.3E-05 45.1 2.9 21 222-242 5-25 (166)
488 1z2a_A RAS-related protein RAB 85.7 0.5 1.7E-05 44.6 3.7 23 220-242 5-27 (168)
489 2d2e_A SUFC protein; ABC-ATPas 85.6 0.38 1.3E-05 49.4 3.0 22 221-242 30-51 (250)
490 3cio_A ETK, tyrosine-protein k 85.6 1.1 3.8E-05 47.3 6.6 38 218-255 102-140 (299)
491 4tmk_A Protein (thymidylate ki 85.5 1.1 3.9E-05 44.5 6.3 34 221-254 4-38 (213)
492 3gfo_A Cobalt import ATP-bindi 85.5 0.34 1.2E-05 50.6 2.5 22 221-242 35-56 (275)
493 3cmw_A Protein RECA, recombina 85.4 1.3 4.3E-05 57.5 8.1 52 204-255 366-418 (1706)
494 2zu0_C Probable ATP-dependent 85.4 0.4 1.4E-05 49.9 3.0 23 221-243 47-69 (267)
495 1b0u_A Histidine permease; ABC 85.4 0.34 1.2E-05 50.2 2.5 22 221-242 33-54 (262)
496 1tq4_A IIGP1, interferon-induc 85.3 0.38 1.3E-05 53.2 3.0 35 208-242 57-91 (413)
497 3ez2_A Plasmid partition prote 85.3 1.2 4.2E-05 49.2 7.1 30 217-246 105-135 (398)
498 3gmt_A Adenylate kinase; ssgci 85.3 0.45 1.5E-05 47.9 3.2 23 222-244 10-32 (230)
499 3ld9_A DTMP kinase, thymidylat 85.3 0.57 2E-05 47.0 4.0 28 219-246 20-47 (223)
500 2oze_A ORF delta'; para, walke 85.2 0.58 2E-05 49.4 4.3 35 221-255 35-72 (298)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.1e-48 Score=382.11 Aligned_cols=171 Identities=36% Similarity=0.676 Sum_probs=160.8
Q ss_pred CCCCCCcccEEEcCccccccCchHHHHHHHHhhCCCceEEeC-CCCCCccchHHHHHHhhhcceeeeeeccCccchhhhH
Q 002125 20 SPRNSNKYGVFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCL 98 (963)
Q Consensus 20 ~~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~ 98 (963)
++.+.++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|||||+||++|.||+
T Consensus 29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl 108 (204)
T 3ozi_A 29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL 108 (204)
T ss_dssp -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence 345789999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc-CCcEEEeEeeeccCcccccccccchhhHhhhcCCch-hhhhhHHHHHHHhccccCCCCCCCchhhHH
Q 002125 99 DELSKILECKHD-YGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRYP-EKMHRWANALTEAANLSGFDSDVIRPESKL 176 (963)
Q Consensus 99 ~El~~~~~~~~~-~~~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~-~~~~~w~~al~~~~~~~g~~~~~~~~e~~~ 176 (963)
+||++|++|++. ++++|+||||+|+|++||+|+|.|++||++|+.++. +++++||.||+++|+++||++.+..+|+++
T Consensus 109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~ 188 (204)
T 3ozi_A 109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAI 188 (204)
T ss_dssp HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCHHHH
Confidence 999999999864 689999999999999999999999999999999987 889999999999999999999998899999
Q ss_pred HHHHHHHHHhhhcc
Q 002125 177 VEEIANEILERLEE 190 (963)
Q Consensus 177 i~~i~~~v~~~l~~ 190 (963)
+++|+++|+++++.
T Consensus 189 i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 189 ADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999864
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.6e-48 Score=372.83 Aligned_cols=169 Identities=44% Similarity=0.716 Sum_probs=144.9
Q ss_pred CCCcccEEEcCccccccCchHHHHHHHHhhCCCceEEeC-CCCCCccchHHHHHHhhhcceeeeeeccCccchhhhHHHH
Q 002125 23 NSNKYGVFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDEL 101 (963)
Q Consensus 23 ~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~~El 101 (963)
+.++|||||||||+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 568999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCcEEEeEeeeccCcccccccccchhhHhhhcCCch-hhhhhHHHHHHHhccccCCCCCCCchhhHHHHHH
Q 002125 102 SKILECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRYP-EKMHRWANALTEAANLSGFDSDVIRPESKLVEEI 180 (963)
Q Consensus 102 ~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~-~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i 180 (963)
++|++|++.++++|+||||+|+|++||+|+|+|++||++|+.+.. +++++||+||+++|+++||++. ++|+++|++|
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~~I 162 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKI 162 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHHHH
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC--CCHHHHHHHH
Confidence 999999988999999999999999999999999999999998855 8999999999999999999984 7899999999
Q ss_pred HHHHHhhhccccc
Q 002125 181 ANEILERLEETFQ 193 (963)
Q Consensus 181 ~~~v~~~l~~~~~ 193 (963)
+++|.++|++++|
T Consensus 163 v~~v~~~l~~~~~ 175 (176)
T 3jrn_A 163 ANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHTTCC----
T ss_pred HHHHHHHhcCCCC
Confidence 9999999987765
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.2e-40 Score=394.09 Aligned_cols=294 Identities=16% Similarity=0.171 Sum_probs=236.0
Q ss_pred ccchhhHHHHHHhHhcC-CCCeEEEEEEccCCCChhhHHHHHHH----HHhccCCceEEEEecchhhccCCHHHHHHHHH
Q 002125 200 VGVEWRIKEIESLLCTG-FAGVYILGIWGIGGIGKTTIADAVFN----KISRHFEGSYFAQNVREAEETGGIKDLQKELL 274 (963)
Q Consensus 200 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll 274 (963)
+||++++++|.++|..+ .+++++|+|+||||+||||||+++|+ +++.+|+.++|+. +++... .++..++.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 49999999999999754 44689999999999999999999997 6889999999994 433221 46788999999
Q ss_pred HhhhcCCC---C----CC-----HHHHHHHHcCC-ceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchhhhcCC
Q 002125 275 SKLLNDRN---V----WN-----IESQLNRLARK-KFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVLKNCR 341 (963)
Q Consensus 275 ~~l~~~~~---~----~~-----~~~l~~~L~~k-~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~ 341 (963)
..+..... . .. .+.+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..++
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 99876532 1 11 35788889996 999999999999876 3332 27999999999999988775
Q ss_pred -cceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhcCCCCHHHHHHHHHH-hhcCCC
Q 002125 342 -ARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGRSKEEWESAMRK-LEVIPD 419 (963)
Q Consensus 342 -~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~~~~~~w~~~l~~-l~~~~~ 419 (963)
...+|+|++|+.+||++||.+++|+... .+...+++++|+++|+|+||||+++|+.++.+. .+|...+.. +.....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccH
Confidence 4468999999999999999999976543 356788999999999999999999999998774 333333332 222234
Q ss_pred hhHHHHHHHHhhCCChhhHHHHH-----------hhhcccCccChhHHHHHHhhc--CCCh-----------hhhHHhhh
Q 002125 420 KEIQEVLKISYDSLDDPQKNVFL-----------DIACFLEGEHRDEVTSFFDAS--GFQA-----------KIELSVLE 475 (963)
Q Consensus 420 ~~i~~~l~~sy~~L~~~~k~~fl-----------~la~f~~~~~~~~l~~~~~~~--~~~~-----------~~~l~~L~ 475 (963)
..+..++.+||+.||++.|.||+ |||+||+++.++ +.+|.++ |+.. ..++++|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 56777888888888888888888 999999999877 7889998 6542 23699999
Q ss_pred cccCceee----cCEEEEchhHHHHhhhhhcccC
Q 002125 476 GKSLITCF----YNYIRMHDLIRDMGREIVRNES 505 (963)
Q Consensus 476 ~~sLi~~~----~~~~~mHdlv~~~a~~i~~~e~ 505 (963)
++||++.. ..+|+|||+||++|++++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999876 2479999999999999998764
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.2e-35 Score=383.06 Aligned_cols=302 Identities=20% Similarity=0.293 Sum_probs=239.6
Q ss_pred cccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH---HhccCCceEEEEecchhhccCCHH
Q 002125 191 TFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK---ISRHFEGSYFAQNVREAEETGGIK 267 (963)
Q Consensus 191 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 267 (963)
..|..+..||||++++++|.++|....+++++|+|+||||+||||||+++|++ ...+|...+|+..+.... .....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 196 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLL 196 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHH
Confidence 35667788999999999999999876678999999999999999999999985 456677666444443321 22334
Q ss_pred HHHHHHHHhhhcCCCC-----CCHHHHHHH----HcC--CceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchh
Q 002125 268 DLQKELLSKLLNDRNV-----WNIESQLNR----LAR--KKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQV 336 (963)
Q Consensus 268 ~l~~~ll~~l~~~~~~-----~~~~~l~~~----L~~--k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 336 (963)
.....++..+...... ...+.+.+. +.+ +|+||||||||+.++|+.+ ++|++||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 4455566665543321 344444444 444 4999999999999876653 689999999999999
Q ss_pred hhc-CCcceEEEecc-CCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhcCCCCHHHHHHHHHHh
Q 002125 337 LKN-CRARQIFRMKE-LEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGRSKEEWESAMRKL 414 (963)
Q Consensus 337 ~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~~~~~~w~~~l~~l 414 (963)
+.. .+....+++++ |+.+||++||...++.. .+...+.+++|+++|+|+||||+++|++|+.+. .+|...++++
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 854 45667899996 99999999999988432 233446799999999999999999999998765 4788888887
Q ss_pred hcCC-----------ChhHHHHHHHHhhCCChhhHHHHHhhhcccCcc--ChhHHHHHHhhcCCChhhhHHhhhcccCce
Q 002125 415 EVIP-----------DKEIQEVLKISYDSLDDPQKNVFLDIACFLEGE--HRDEVTSFFDASGFQAKIELSVLEGKSLIT 481 (963)
Q Consensus 415 ~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~ 481 (963)
.... ...+..++.+||+.|++++|.||++||+||+++ +.+.++.+|.+++..++.++++|+++||++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceE
Confidence 6432 145899999999999999999999999999986 567889999888777889999999999999
Q ss_pred ee-cC---EEEEchhHHHHhhhhhccc
Q 002125 482 CF-YN---YIRMHDLIRDMGREIVRNE 504 (963)
Q Consensus 482 ~~-~~---~~~mHdlv~~~a~~i~~~e 504 (963)
.. .+ +|+||+++|+++++.+.++
T Consensus 426 ~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 426 CNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EecCCCceEEEecHHHHHHHHhhhhHH
Confidence 87 33 5999999999999987665
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.3e-35 Score=348.25 Aligned_cols=273 Identities=15% Similarity=0.157 Sum_probs=211.9
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHH--HHhccCCc-eEEEEecchhhccCCHHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFN--KISRHFEG-SYFAQNVREAEETGGIKDLQKEL 273 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~l~~~l 273 (963)
+..|||++++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+. ++|+. + +...+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-V---s~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-L---KNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-C---CCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-e---CCCCCHHHHHHHH
Confidence 44599999999999999753 3579999999999999999999997 57889998 56664 4 3344555555555
Q ss_pred HHhhhc---CCC-C-C-------C----HHHHHHHH---cCCceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCc
Q 002125 274 LSKLLN---DRN-V-W-------N----IESQLNRL---ARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDK 334 (963)
Q Consensus 274 l~~l~~---~~~-~-~-------~----~~~l~~~L---~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 334 (963)
+..+.. ... . . + .+.+++.| .++|+||||||||+.++|+.+ ++||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccCh
Confidence 543221 100 0 1 1 12445544 579999999999999888875 2799999999999
Q ss_pred hhhhcCCcceEEEec------cCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhcCCC--CHHH
Q 002125 335 QVLKNCRARQIFRMK------ELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGR--SKEE 406 (963)
Q Consensus 335 ~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~~--~~~~ 406 (963)
.++..+.....|+++ +|+.+||++||++.. +.. ..++..+ .|+|+||||+++|+.|+++ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHH
Confidence 987644443456777 999999999999884 322 1223333 3999999999999999876 6788
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHhhCCChhh-HHHHHhhhcccCccC--hhHHHHHHhhcCC-ChhhhHHhhhcccCcee
Q 002125 407 WESAMRKLEVIPDKEIQEVLKISYDSLDDPQ-KNVFLDIACFLEGEH--RDEVTSFFDASGF-QAKIELSVLEGKSLITC 482 (963)
Q Consensus 407 w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~la~f~~~~~--~~~l~~~~~~~~~-~~~~~l~~L~~~sLi~~ 482 (963)
|... ....+..+|+.||+.|++++ |.||++||+||+++. .+.++.+|.++|. .+..++++|+++||++.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 8753 35789999999999999999 999999999999875 4678899998853 46778999999999998
Q ss_pred e--cCEEEEchhHHHHh
Q 002125 483 F--YNYIRMHDLIRDMG 497 (963)
Q Consensus 483 ~--~~~~~mHdlv~~~a 497 (963)
. .++|+|||++++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 6 56899999998854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=331.32 Aligned_cols=297 Identities=21% Similarity=0.256 Sum_probs=225.3
Q ss_pred cccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH---hccCC-ceEEEEecchhhccCCH
Q 002125 191 TFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI---SRHFE-GSYFAQNVREAEETGGI 266 (963)
Q Consensus 191 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 266 (963)
..|..+..||||++++++|.++|....++.++|+|+||||+||||||.+++++. ..+|+ .++|+. +.... ...+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~-~~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQD-KSGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCC-HHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCc-hHHH
Confidence 346677889999999999999998655678999999999999999999999743 77896 566664 33221 1111
Q ss_pred HHHHHHHHHhhhcCC-----CCCCHH----HHHHHHcC--CceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCch
Q 002125 267 KDLQKELLSKLLNDR-----NVWNIE----SQLNRLAR--KKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQ 335 (963)
Q Consensus 267 ~~l~~~ll~~l~~~~-----~~~~~~----~l~~~L~~--k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 335 (963)
......+...+.... .....+ .+.+.+.+ +++||||||||+..+++. +++|++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcH
Confidence 222223333333211 113333 45555555 799999999999876553 368999999999998
Q ss_pred hhhcCCcceEEEe---ccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhcCCCCHHHHHHHHH
Q 002125 336 VLKNCRARQIFRM---KELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCGRSKEEWESAMR 412 (963)
Q Consensus 336 v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~~~~~~w~~~l~ 412 (963)
++..+. ...+++ ++|+.+||++||...++.. .....+.+++|+++|+|+||||+++|+.++... .+|...++
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 876544 345665 4899999999999988542 222245689999999999999999999997653 36888888
Q ss_pred HhhcCC-----------ChhHHHHHHHHhhCCChhhHHHHHhhhcccCcc--ChhHHHHHHhhcCCChhhhHHhhhcccC
Q 002125 413 KLEVIP-----------DKEIQEVLKISYDSLDDPQKNVFLDIACFLEGE--HRDEVTSFFDASGFQAKIELSVLEGKSL 479 (963)
Q Consensus 413 ~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~~~~l~~L~~~sL 479 (963)
.+.... ...+..++..||+.|++++|.||+++|+||++. +.+.+..+|..++..+...++.|+++||
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~L 423 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSL 423 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcC
Confidence 776432 247899999999999999999999999999876 4567888887765567788999999999
Q ss_pred ceee--c--CEEEEchhHHHHhhhhh
Q 002125 480 ITCF--Y--NYIRMHDLIRDMGREIV 501 (963)
Q Consensus 480 i~~~--~--~~~~mHdlv~~~a~~i~ 501 (963)
+... + .+|+||+++|+++++..
T Consensus 424 l~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 424 LFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp SEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred eEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9865 2 37999999999998873
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=1.3e-30 Score=252.20 Aligned_cols=133 Identities=19% Similarity=0.341 Sum_probs=118.6
Q ss_pred CCCCcccEEEcCccccccCchHHHHHHHHhhCCCceEEeC-CCCCCccchHHHHHHhhhcceeeeeeccCccchhhhHHH
Q 002125 22 RNSNKYGVFLSFRGEDTRDNFTSHLYSALCHNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDE 100 (963)
Q Consensus 22 ~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~~E 100 (963)
.+.++|||||||+|+| +..|+.||+++|+++||+||+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 4679999999999999 56899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEeEeeeccCcccccccccchhhHhhhcCCchhhhhhHHHHHH
Q 002125 101 LSKILECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRYPEKMHRWANALT 157 (963)
Q Consensus 101 l~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~w~~al~ 157 (963)
+..+++|...++++|+||||+|+|++||+|.|.|+++|+...... .+.++.+.|.
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~~--~~~~ia~~l~ 149 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTK--SVDEIVADLM 149 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTTS--CHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCcc--cHHHHHHHHH
Confidence 999999988888899999999999999999999999887765443 3444443443
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=3.2e-26 Score=282.79 Aligned_cols=237 Identities=19% Similarity=0.227 Sum_probs=118.2
Q ss_pred eeeeEEecCCc----cCCCccccCCCCcEEeecCCCCccccccc-cCCCCCccEEeCcCCccccccC--------CCCcc
Q 002125 557 YTLELVKVGIK----ELPSSIECLSNLKKLYIVDCSKLESISSS-IFKLKSLQSIEISNCSILKRFL--------EIPSC 623 (963)
Q Consensus 557 ~~L~~l~~~~~----~lp~~~~~L~~L~~L~L~~~~~~~~lp~~-~~~L~~L~~L~Ls~n~~l~~~~--------~l~~~ 623 (963)
.+|+.++++.+ .+|..++.+++|++|++++|...+.+|.. +.++++|++|+|++|.....++ .+..+
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 44555555443 34555666666666666665555555544 5666666666666665432111 11122
Q ss_pred ccCCCC-------cccc--ccccc-cccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcc
Q 002125 624 NIDGGI-------GIER--LASCK-LVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTA 693 (963)
Q Consensus 624 ~l~~~~-------~l~~--l~~L~-l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~ 693 (963)
++.++. .+.. +..|+ +.+.+|.-...+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence 222110 0000 11122 3333333323445555555555555555555555555555555555555555555
Q ss_pred cc-ccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCc-cc
Q 002125 694 IR-EVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMR-EV 771 (963)
Q Consensus 694 l~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~-~l 771 (963)
++ .+|..+..+++|+.|++++|...+.+|..+.. +++|+.|++++|.+.+.+|..++.+++|+.|+|++|.++ .+
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN---CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG---CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc---CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence 55 44555555555555555555554455554443 555555555555555555555555555555555555554 45
Q ss_pred CcccCCCCCCCEEECcCCCCc-ccCc
Q 002125 772 PESLGQLSSVKNLVLTNNNLK-RLPE 796 (963)
Q Consensus 772 p~~l~~l~~L~~L~Ls~n~l~-~lp~ 796 (963)
|..++.+++|+.|+|++|.++ .+|.
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred CHHHcCCCCCCEEECCCCccCCcCCh
Confidence 555555555555555555544 3443
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.1e-24 Score=238.46 Aligned_cols=227 Identities=23% Similarity=0.374 Sum_probs=197.7
Q ss_pred ccceeeeEEecCCccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcccc
Q 002125 554 CHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIER 633 (963)
Q Consensus 554 ~~l~~L~~l~~~~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~ 633 (963)
.++..|.+-......+|..+..+++|++|++++|... .+|..++++++|++|+|++|.+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-------------------- 139 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-------------------- 139 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC--------------------
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc--------------------
Confidence 4566666666666788999999999999999997655 8999999999999999999853
Q ss_pred ccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCC---------CCCCcEEEecCccccccCccccCC
Q 002125 634 LASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGN---------LKALEMLIVDGTAIREVPKSLNQL 704 (963)
Q Consensus 634 l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~---------l~~L~~L~L~~n~l~~lp~~~~~l 704 (963)
..+|..+.++++|++|++++|...+.+|..++. +++|++|++++|.++.+|.+++++
T Consensus 140 --------------~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l 205 (328)
T 4fcg_A 140 --------------RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205 (328)
T ss_dssp --------------CCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGC
T ss_pred --------------ccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCC
Confidence 357888999999999999999999999987765 999999999999999999999999
Q ss_pred CCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCc-ccCcccCCCCCCCE
Q 002125 705 ALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMR-EVPESLGQLSSVKN 783 (963)
Q Consensus 705 ~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 783 (963)
++|+.|++++|.. ..+|..+.. +++|+.|++++|.+.+.+|..++++++|+.|+|++|++. .+|..++.+++|+.
T Consensus 206 ~~L~~L~L~~N~l-~~l~~~l~~---l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 206 QNLKSLKIRNSPL-SALGPAIHH---LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp TTCCEEEEESSCC-CCCCGGGGG---CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred CCCCEEEccCCCC-CcCchhhcc---CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 9999999999955 467777665 899999999999999999999999999999999998765 88999999999999
Q ss_pred EECcCCCC-cccCccccCCCCCCEEEeccCCCCCCce
Q 002125 784 LVLTNNNL-KRLPESLNQLSSLEYLQLHLRSPRKLTS 819 (963)
Q Consensus 784 L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~~~~~~L~~ 819 (963)
|+|++|++ ..+|..++++++|+.+++..+....+..
T Consensus 282 L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC---
T ss_pred EeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhh
Confidence 99999865 5799999999999999987655554443
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.1e-24 Score=269.11 Aligned_cols=322 Identities=20% Similarity=0.175 Sum_probs=234.6
Q ss_pred ccccCCcccccccCCCcccccceeeeEEecCCc----cCCCc-cccCCCCcEEeecCCCCccccccccCCCC-CccEEeC
Q 002125 535 SLPISIPFKDLVNFPSVTSCHVYTLELVKVGIK----ELPSS-IECLSNLKKLYIVDCSKLESISSSIFKLK-SLQSIEI 608 (963)
Q Consensus 535 ~i~l~~~~~~~~~~~~f~~~~l~~L~~l~~~~~----~lp~~-~~~L~~L~~L~L~~~~~~~~lp~~~~~L~-~L~~L~L 608 (963)
.+.++.+......+..| .++.+|+.|+++.+ .+|.. +..+++|++|++++|...+.+|..+.+++ +|++|+|
T Consensus 298 ~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFF--GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp EEECCSSEEEECCCGGG--GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred EEECcCCcCCCccchHH--hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 33343333332334455 66777777777654 44544 77788888888888776667777777776 7888888
Q ss_pred cCCccccc---------cCCCCccccCCCC-------ccccccccc-cccccCcCCCcCCccccCCCCCCeeeccccccc
Q 002125 609 SNCSILKR---------FLEIPSCNIDGGI-------GIERLASCK-LVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNF 671 (963)
Q Consensus 609 s~n~~l~~---------~~~l~~~~l~~~~-------~l~~l~~L~-l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~ 671 (963)
++|..... ...+..+.+.++. .+..+..|+ +++.++.-...+|..++.+++|++|++++|.+.
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 87765432 1123333443332 123344454 666666555578888999999999999999999
Q ss_pred ccCCcccCCCCCCcEEEecCcccc-ccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCcc
Q 002125 672 MMLPYELGNLKALEMLIVDGTAIR-EVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPD 750 (963)
Q Consensus 672 ~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 750 (963)
+.+|..++++++|++|++++|.++ .+|..+.++++|+.|++++|...+.+|..+.. +++|+.|++++|.+.+.+|.
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~---l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR---LENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG---CTTCCEEECCSSCCEEECCG
T ss_pred CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc---CCCCCEEECCCCcccCcCCH
Confidence 999999999999999999999998 78888999999999999999888889988776 88999999999999999999
Q ss_pred ccCCCCCccEEEcCCCCCc-ccCc--------------------------------------------------------
Q 002125 751 ELGNLKALETLIIDGTAMR-EVPE-------------------------------------------------------- 773 (963)
Q Consensus 751 ~l~~l~~L~~L~L~~n~l~-~lp~-------------------------------------------------------- 773 (963)
.++++++|+.|++++|.++ .+|.
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 9999999999999999876 4443
Q ss_pred --------------ccCCCCCCCEEECcCCCCc-ccCccccCCCCCCEEEeccCCCCCCceecCCc-chhhhHhhCchhh
Q 002125 774 --------------SLGQLSSVKNLVLTNNNLK-RLPESLNQLSSLEYLQLHLRSPRKLTSLNLSV-NLRNYLKLDPNEL 837 (963)
Q Consensus 774 --------------~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~~~L~~L~l~~-n~~~~~~l~~n~l 837 (963)
.++.+++|+.|+|++|+++ .+|..++++++|+.|+|++|.+.....-.+.. ..+..+++++|.+
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 3445678999999999998 68899999999999999887653110000000 0012334566688
Q ss_pred HHHHhccccccccceeeeecCCCC
Q 002125 838 SEIVKDGWMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~g~~i 861 (963)
+|..|..+...+.+..+.+.+|.+
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEE
T ss_pred cCcCChHHhCCCCCCEEECcCCcc
Confidence 888887777777777787777643
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=2.3e-24 Score=260.15 Aligned_cols=252 Identities=15% Similarity=0.180 Sum_probs=173.3
Q ss_pred ccceeeeEEecCC---cc------------------CCCccc--cCCCCcEEeecCCCCccccccccCCCCCccEEeCcC
Q 002125 554 CHVYTLELVKVGI---KE------------------LPSSIE--CLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISN 610 (963)
Q Consensus 554 ~~l~~L~~l~~~~---~~------------------lp~~~~--~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~ 610 (963)
.++++|+.|+++. .. +|..++ ++++|++|++++|...+.+|..++++++|++|+|++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 6666777776654 34 888888 999999999999999999999999999999999999
Q ss_pred Cc-ccc-ccCCCCccccCCCCccccccccc-cccccCcCCCcCCc--cccCCCCCCeeecccccccccCCcccCCCCCCc
Q 002125 611 CS-ILK-RFLEIPSCNIDGGIGIERLASCK-LVLEKCSSLQSLPS--SLCMFKSLTSLEIIDCQNFMMLPYELGNLKALE 685 (963)
Q Consensus 611 n~-~l~-~~~~l~~~~l~~~~~l~~l~~L~-l~l~~~~~l~~lP~--~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 685 (963)
|. ... .++ . .+.....+..+..|+ +.+.++ .+..+|. .++++++|++|++++|.+.+.+| .++++++|+
T Consensus 283 n~~l~~~~lp---~-~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 283 NRGISGEQLK---D-DWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp CTTSCHHHHH---H-HHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred CCCCccccch---H-HHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 97 432 111 0 000000001112333 333333 3447887 78888888888888888877888 778888888
Q ss_pred EEEecCccccccCccccCCCC-CcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccC-------CCCC
Q 002125 686 MLIVDGTAIREVPKSLNQLAL-LFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELG-------NLKA 757 (963)
Q Consensus 686 ~L~L~~n~l~~lp~~~~~l~~-L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~-------~l~~ 757 (963)
+|++++|.++.+|..+..+++ |+.|++++|... .+|..+.. ..+++|+.|++++|.+.+.+|..+. .+++
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA-KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT-TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhh-cccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 888888888888888888888 888888887544 77765543 1133677777777777777777666 6667
Q ss_pred ccEEEcCCCCCcccCccc-CCCCCCCEEECcCCCCcccCccc-cCC-------CCCCEEEeccCC
Q 002125 758 LETLIIDGTAMREVPESL-GQLSSVKNLVLTNNNLKRLPESL-NQL-------SSLEYLQLHLRS 813 (963)
Q Consensus 758 L~~L~L~~n~l~~lp~~l-~~l~~L~~L~Ls~n~l~~lp~~l-~~l-------~~L~~L~L~~~~ 813 (963)
|+.|+|++|.++.+|..+ ..+++|+.|+|++|.++.+|..+ ..+ ++|+.|+|++|.
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 777777777777776553 34667777777777776666443 222 266667666543
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=4.1e-24 Score=262.27 Aligned_cols=300 Identities=14% Similarity=0.164 Sum_probs=159.1
Q ss_pred ccceeeeEEecCC---cc------------------CCCccc--cCCCCcEEeecCCCCccccccccCCCCCccEEeCcC
Q 002125 554 CHVYTLELVKVGI---KE------------------LPSSIE--CLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISN 610 (963)
Q Consensus 554 ~~l~~L~~l~~~~---~~------------------lp~~~~--~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~ 610 (963)
.++++|+.|+++. .. +|..++ ++++|++|+|++|+..+.+|..+++|++|++|+|++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 6666677766644 33 788777 999999999999888999999999999999999999
Q ss_pred Cc-ccc-ccC--------------CCCccccCCCC-----c---cccccccc-cccccCcCCCcCCccccCCCCCCeeec
Q 002125 611 CS-ILK-RFL--------------EIPSCNIDGGI-----G---IERLASCK-LVLEKCSSLQSLPSSLCMFKSLTSLEI 665 (963)
Q Consensus 611 n~-~l~-~~~--------------~l~~~~l~~~~-----~---l~~l~~L~-l~l~~~~~l~~lP~~~~~l~~L~~L~L 665 (963)
|. ... .++ .+..+.+.++. . +..+..|+ |++.++. +..+| .+..+++|+.|+|
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEEC
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEEC
Confidence 87 332 111 22222222211 0 11122222 2222221 22444 3444444444444
Q ss_pred ccccccccCCcccCCCCC-CcEEEecCccccccCccccCCCC--CcEEEccCCCCCCCCCccccccc--CCCCCcEEEcc
Q 002125 666 IDCQNFMMLPYELGNLKA-LEMLIVDGTAIREVPKSLNQLAL--LFRLKLKNCSELDGISSSIFSLC--MFKSLTSLEII 740 (963)
Q Consensus 666 ~~~~~~~~~p~~~~~l~~-L~~L~L~~n~l~~lp~~~~~l~~--L~~L~L~~~~~l~~lp~~~~~l~--~l~~L~~L~l~ 740 (963)
++|.+. .+|..+.++++ |+.|+|++|.++.+|..+..++. |+.|++++|...+.+|.....+. .+++|+.|+++
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 444433 44444444444 44444444444444444433322 44444444443333222111111 12355555555
Q ss_pred CCCCCCcCcccc-CCCCCccEEEcCCCCCcccCcccCCC--------CCCCEEECcCCCCcccCcccc--CCCCCCEEEe
Q 002125 741 DCQNFMILPDEL-GNLKALETLIIDGTAMREVPESLGQL--------SSVKNLVLTNNNLKRLPESLN--QLSSLEYLQL 809 (963)
Q Consensus 741 ~~~~~~~~p~~l-~~l~~L~~L~L~~n~l~~lp~~l~~l--------~~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L~L 809 (963)
+|.+. .+|..+ ..+++|+.|+|++|.++.+|..+... ++|+.|+|++|+++.+|..+. .+++|+.|+|
T Consensus 682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 682 YNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760 (876)
T ss_dssp SSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEEC
T ss_pred CCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEe
Confidence 55544 233332 35666666666666666666543322 266666666666666666655 6666666666
Q ss_pred ccCCC----------CCCceecCCcchhhhHhhCchhhHHHHhccccccccceeeeecCCCC
Q 002125 810 HLRSP----------RKLTSLNLSVNLRNYLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 810 ~~~~~----------~~L~~L~l~~n~~~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~i 861 (963)
++|.+ ++|+.|+|++|. +++.|.+.+..|..+.....+..+.+.+|.+
T Consensus 761 s~N~L~~lp~~l~~L~~L~~L~Ls~N~----~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 761 SYNCFSSFPTQPLNSSQLKAFGIRHQR----DAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CSSCCSSCCCGGGGCTTCCEEECCCCB----CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCCCCccchhhhcCCCCCEEECCCCC----CcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 65443 234444444332 2344566655555555566666667766654
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=2e-24 Score=237.02 Aligned_cols=223 Identities=22% Similarity=0.285 Sum_probs=193.0
Q ss_pred cceeeeEEecCCc---cCCCccccCCCCcEEeecC-CCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 555 HVYTLELVKVGIK---ELPSSIECLSNLKKLYIVD-CSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 555 ~l~~L~~l~~~~~---~lp~~~~~L~~L~~L~L~~-~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
+++.|.+-..... .+|..+.++++|++|++++ |+..+.+|..++++++|++|+|++|.+..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------- 115 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--------------- 115 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE---------------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC---------------
Confidence 4455555444443 5788999999999999995 77777899999999999999999986422
Q ss_pred cccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcccc-ccCccccCCC-CCc
Q 002125 631 IERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIR-EVPKSLNQLA-LLF 708 (963)
Q Consensus 631 l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~-~L~ 708 (963)
.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.++ .+|..+..++ +|+
T Consensus 116 ------------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 116 ------------------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp ------------------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred ------------------cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 56777888999999999999999899999999999999999999998 8899999998 999
Q ss_pred EEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcC
Q 002125 709 RLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTN 788 (963)
Q Consensus 709 ~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~ 788 (963)
.|++++|...+.+|..+.. ++ |+.|++++|.+.+..|..+..+++|+.|+|++|.++..+..+..+++|++|+|++
T Consensus 178 ~L~L~~N~l~~~~~~~~~~---l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFAN---LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp EEECCSSEEEEECCGGGGG---CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS
T ss_pred EEECcCCeeeccCChHHhC---Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcC
Confidence 9999999877788888776 55 9999999999988899999999999999999999987766788999999999999
Q ss_pred CCCc-ccCccccCCCCCCEEEeccCCC
Q 002125 789 NNLK-RLPESLNQLSSLEYLQLHLRSP 814 (963)
Q Consensus 789 n~l~-~lp~~l~~l~~L~~L~L~~~~~ 814 (963)
|.++ .+|..+..+++|+.|+|++|.+
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcc
Confidence 9998 7898999999999999987643
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=3.4e-24 Score=258.60 Aligned_cols=230 Identities=16% Similarity=0.232 Sum_probs=193.9
Q ss_pred CCCccccCCCCcEEeecCCCCccc-----------------cccccC--CCCCccEEeCcCCccccccCCCCccccCCCC
Q 002125 569 LPSSIECLSNLKKLYIVDCSKLES-----------------ISSSIF--KLKSLQSIEISNCSILKRFLEIPSCNIDGGI 629 (963)
Q Consensus 569 lp~~~~~L~~L~~L~L~~~~~~~~-----------------lp~~~~--~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~ 629 (963)
+|..++++++|++|+|++|...+. +|..++ ++++|++|+|++|...+.++ .
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p---~------- 267 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP---T------- 267 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC---T-------
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh---H-------
Confidence 678899999999999999887765 999999 99999999999997654322 1
Q ss_pred ccccccccc-cccccCcCCC--cCCccccCC------CCCCeeecccccccccCCc--ccCCCCCCcEEEecCcccc-cc
Q 002125 630 GIERLASCK-LVLEKCSSLQ--SLPSSLCMF------KSLTSLEIIDCQNFMMLPY--ELGNLKALEMLIVDGTAIR-EV 697 (963)
Q Consensus 630 ~l~~l~~L~-l~l~~~~~l~--~lP~~~~~l------~~L~~L~L~~~~~~~~~p~--~~~~l~~L~~L~L~~n~l~-~l 697 (963)
.+..+..|+ |++.++..+. .+|..++++ ++|++|++++|.+. .+|. .++++++|++|++++|.++ .+
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 222344444 5666665455 588888776 99999999999987 8998 8999999999999999999 99
Q ss_pred CccccCCCCCcEEEccCCCCCCCCCcccccccCCCC-CcEEEccCCCCCCcCccccCCCC--CccEEEcCCCCCc-ccCc
Q 002125 698 PKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKS-LTSLEIIDCQNFMILPDELGNLK--ALETLIIDGTAMR-EVPE 773 (963)
Q Consensus 698 p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~-L~~L~l~~~~~~~~~p~~l~~l~--~L~~L~L~~n~l~-~lp~ 773 (963)
| .++++++|+.|++++|... .+|..+.. +++ |+.|++++|.+. .+|..+..++ +|+.|++++|.++ .+|.
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~-~lp~~l~~---l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT-EIPANFCG---FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE-ECCTTSEE---ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred h-hhCCCCCCCEEECCCCccc-cccHhhhh---hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 9 8999999999999999554 88888776 788 999999999987 7888887765 9999999999998 4677
Q ss_pred ccC-------CCCCCCEEECcCCCCcccCccc-cCCCCCCEEEeccCCCC
Q 002125 774 SLG-------QLSSVKNLVLTNNNLKRLPESL-NQLSSLEYLQLHLRSPR 815 (963)
Q Consensus 774 ~l~-------~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~~~~~ 815 (963)
.+. .+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|.+.
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 787 7889999999999999999764 67999999999987654
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1.4e-23 Score=249.94 Aligned_cols=333 Identities=17% Similarity=0.156 Sum_probs=200.5
Q ss_pred ccccCCcccccccCCCcccccceeeeEEecCCccC----CCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcC
Q 002125 535 SLPISIPFKDLVNFPSVTSCHVYTLELVKVGIKEL----PSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISN 610 (963)
Q Consensus 535 ~i~l~~~~~~~~~~~~f~~~~l~~L~~l~~~~~~l----p~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~ 610 (963)
.+.++.+....+....| .++++|+.|+++.+.+ |..|..+++|++|++++|...+..|..++++++|++|+|++
T Consensus 30 ~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp EEECCSSCCCEECSSTT--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred EEECcCCccCccChhhh--hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 45555554445555667 7788888888876544 35788888889999888766655555688888888998888
Q ss_pred CccccccCCCCccccCCCCccccccccc-cccccCcCCCcCC-ccccCCCCCCeeecccccccccCCcccCCC-------
Q 002125 611 CSILKRFLEIPSCNIDGGIGIERLASCK-LVLEKCSSLQSLP-SSLCMFKSLTSLEIIDCQNFMMLPYELGNL------- 681 (963)
Q Consensus 611 n~~l~~~~~l~~~~l~~~~~l~~l~~L~-l~l~~~~~l~~lP-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l------- 681 (963)
|..... ..+ ..+..+..|+ +++.++..+..+| ..+.++++|++|++++|.+.+..|..++++
T Consensus 108 n~l~~~--~~~-------~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 108 NPYQTL--GVT-------SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CCCSSS--CSS-------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred Cccccc--chh-------hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 864321 000 0111122222 3333333333443 234455555555555555544444444433
Q ss_pred -----------------CCCcEEEecCccccccC---c-----------------------------cccC---------
Q 002125 682 -----------------KALEMLIVDGTAIREVP---K-----------------------------SLNQ--------- 703 (963)
Q Consensus 682 -----------------~~L~~L~L~~n~l~~lp---~-----------------------------~~~~--------- 703 (963)
++|++|++++|.++.++ . .+..
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 33333444433333210 0 0001
Q ss_pred --------------------------------------------------CCCCcEEEccCCCCCCCCCcccccccCCCC
Q 002125 704 --------------------------------------------------LALLFRLKLKNCSELDGISSSIFSLCMFKS 733 (963)
Q Consensus 704 --------------------------------------------------l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~ 733 (963)
+.+|+.|++++|. +..+|..++ ..+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~--~~l~~ 335 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFS--QHLKS 335 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHH--HHCTT
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHH--hcCcc
Confidence 1223333333332 233444332 13788
Q ss_pred CcEEEccCCCCCCcCc---cccCCCCCccEEEcCCCCCcccC---cccCCCCCCCEEECcCCCCcccCccccCCCCCCEE
Q 002125 734 LTSLEIIDCQNFMILP---DELGNLKALETLIIDGTAMREVP---ESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYL 807 (963)
Q Consensus 734 L~~L~l~~~~~~~~~p---~~l~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 807 (963)
|+.|++++|.+.+.+| ..++.+++|+.|++++|.++.+| ..++.+++|+.|+|++|+++.+|..+..+++|+.|
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEE
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEE
Confidence 9999999998887664 34778889999999999998776 35888899999999999999999888888999999
Q ss_pred EeccCCC--------CCCceecCCcchh----------hhHhhCchhhHHHHhccccccccceeeeecCCCC----CCCc
Q 002125 808 QLHLRSP--------RKLTSLNLSVNLR----------NYLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEI----PKWF 865 (963)
Q Consensus 808 ~L~~~~~--------~~L~~L~l~~n~~----------~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~i----P~w~ 865 (963)
++++|.+ ++|+.|++++|.+ ..+++++|.++.+.. ......+..+.+.+|.+ |.+|
T Consensus 416 ~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 416 NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp ECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHH
Confidence 9987765 4677788777744 233677787774432 23345567788888765 3445
Q ss_pred ccccCCceEEEeCCCCCccC
Q 002125 866 RYQSMGSSVTLKMPPADFLN 885 (963)
Q Consensus 866 ~~~~~~~~~~~~l~~~~~~~ 885 (963)
.....-. .+.+..+.+.+
T Consensus 494 ~~l~~L~--~L~l~~N~~~~ 511 (549)
T 2z81_A 494 DRLTSLQ--KIWLHTNPWDC 511 (549)
T ss_dssp GGCTTCC--EEECCSSCBCC
T ss_pred hcCcccC--EEEecCCCccC
Confidence 4433333 34444554433
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=4.7e-23 Score=252.89 Aligned_cols=297 Identities=18% Similarity=0.192 Sum_probs=195.7
Q ss_pred CCCccccCCCCcEEeecCCCCcc-----------------ccccccC--CCCCccEEeCcCCccccc-------cCCCCc
Q 002125 569 LPSSIECLSNLKKLYIVDCSKLE-----------------SISSSIF--KLKSLQSIEISNCSILKR-------FLEIPS 622 (963)
Q Consensus 569 lp~~~~~L~~L~~L~L~~~~~~~-----------------~lp~~~~--~L~~L~~L~Ls~n~~l~~-------~~~l~~ 622 (963)
+|..++++++|++|+|++|...+ .+|..++ ++++|++|+|++|...+. +..+..
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 88999999999999999988777 3999988 999999999999976543 223333
Q ss_pred cccCCCCccc---------ccc-------ccc-cccccCcCCCcCCc--cccCCCCCCeeecccccccccCCcccCCCCC
Q 002125 623 CNIDGGIGIE---------RLA-------SCK-LVLEKCSSLQSLPS--SLCMFKSLTSLEIIDCQNFMMLPYELGNLKA 683 (963)
Q Consensus 623 ~~l~~~~~l~---------~l~-------~L~-l~l~~~~~l~~lP~--~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~ 683 (963)
+++.++..+. .+. .|+ |++.++ .+..+|. .+.++++|++|+|++|.+. .+| .++++++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 4555443111 111 344 444443 3447777 7777888888888887766 777 7777888
Q ss_pred CcEEEecCccccccCccccCCCC-CcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccc---cC--CCCC
Q 002125 684 LEMLIVDGTAIREVPKSLNQLAL-LFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDE---LG--NLKA 757 (963)
Q Consensus 684 L~~L~L~~n~l~~lp~~~~~l~~-L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~---l~--~l~~ 757 (963)
|+.|+|++|.++.+|.++.++++ |+.|+|++|.. ..+|..+.. ...++|+.|++++|.+.+.+|.. +. .+++
T Consensus 597 L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~-~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNA-KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCC-CSCCSCCCT-TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccccchHHHhhccccCCEEECcCCCC-CcCchhhhc-cccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 88888888888877777777777 88888887754 367765543 11234788888888777665532 22 3347
Q ss_pred ccEEEcCCCCCcccCcccC-CCCCCCEEECcCCCCcccCccccC--------CCCCCEEEeccCCCCCCceecCC-cc--
Q 002125 758 LETLIIDGTAMREVPESLG-QLSSVKNLVLTNNNLKRLPESLNQ--------LSSLEYLQLHLRSPRKLTSLNLS-VN-- 825 (963)
Q Consensus 758 L~~L~L~~n~l~~lp~~l~-~l~~L~~L~Ls~n~l~~lp~~l~~--------l~~L~~L~L~~~~~~~L~~L~l~-~n-- 825 (963)
|+.|+|++|.++.+|..+. .+++|+.|+|++|+++.+|..+.. |++|+.|+|++|++..+..- +. .+
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~-l~~~~l~ 753 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD-FRATTLP 753 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG-GSTTTCT
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH-hhhccCC
Confidence 8888888888888877653 778888888888888887765433 23788888877554422110 11 01
Q ss_pred hhhhHhhCchhhHHHHhccccccccceeeeecC------C----CCCCCcccccCCc
Q 002125 826 LRNYLKLDPNELSEIVKDGWMKQSFAKSKYFPG------N----EIPKWFRYQSMGS 872 (963)
Q Consensus 826 ~~~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g------~----~iP~w~~~~~~~~ 872 (963)
.+..+++++|.++++ |..+.....+..+.+.+ | .+|.+|.....-.
T Consensus 754 ~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 754 YLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp TCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred CcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 113345667777763 44455555666666654 3 3466665544333
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.5e-22 Score=244.08 Aligned_cols=149 Identities=26% Similarity=0.265 Sum_probs=91.6
Q ss_pred CCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEE
Q 002125 659 SLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLE 738 (963)
Q Consensus 659 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~ 738 (963)
+|+.|++++|.+.+..+..++++++|++|++++|.++.+|..+.++++|+.|++++|...+..|..+.. +++|+.|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN---FPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG---CTTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhc---cCcCCEEE
Confidence 345555555555554555566677777777777777777777777777777777776544443444444 66666666
Q ss_pred ccCCCCCCcCccc-cCCCCCccEEEcCCCCCccc---CcccCCCCCCCEEECcCCCCccc-CccccCCCCCCEEEec
Q 002125 739 IIDCQNFMILPDE-LGNLKALETLIIDGTAMREV---PESLGQLSSVKNLVLTNNNLKRL-PESLNQLSSLEYLQLH 810 (963)
Q Consensus 739 l~~~~~~~~~p~~-l~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~ 810 (963)
+++|.+.+.+|.. +..+++|++|++++|.++.+ |..++.+++|+.|+|++|.++.+ |..+..+++|+.|+++
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 6666665544433 56666666666666666644 44566666666666666666544 3455666666666664
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=237.30 Aligned_cols=280 Identities=20% Similarity=0.202 Sum_probs=201.7
Q ss_pred ccccCCcccccccCCCcccccceeeeEEecCCccC----CCccccCCCCcEEeecCCCCccccc-cccCCCCCccEEeCc
Q 002125 535 SLPISIPFKDLVNFPSVTSCHVYTLELVKVGIKEL----PSSIECLSNLKKLYIVDCSKLESIS-SSIFKLKSLQSIEIS 609 (963)
Q Consensus 535 ~i~l~~~~~~~~~~~~f~~~~l~~L~~l~~~~~~l----p~~~~~L~~L~~L~L~~~~~~~~lp-~~~~~L~~L~~L~Ls 609 (963)
.+.++.+....+....| .++.+|+.|+++.+.+ |..|.++++|++|+|++|. +..+| ..+.++++|++|+|+
T Consensus 36 ~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEF--ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp EEECCSSCCCEECTTTT--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECT
T ss_pred EEECCCCccceECHhHc--cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECC
Confidence 44555555555556677 7778888888766543 5678888888888888765 44454 456788888888888
Q ss_pred CCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEe
Q 002125 610 NCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIV 689 (963)
Q Consensus 610 ~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L 689 (963)
+|.+... ....+.+ +.+|.. |.+.++.-....|..+..+++|++|++++|.+.+..+..+.++++|+.|++
T Consensus 113 ~n~i~~~----~~~~~~~---l~~L~~--L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 113 ENKIVIL----LDYMFQD---LYNLKS--LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TSCCCEE----CTTTTTT---CTTCCE--EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCccccC----ChhHccc---cccCCE--EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 8865332 1111111 222333 333332222223556778889999999998877766667888899999999
Q ss_pred cCccccccCc-cccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCC
Q 002125 690 DGTAIREVPK-SLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAM 768 (963)
Q Consensus 690 ~~n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l 768 (963)
++|.+..++. .+..+++|+.|++++|...+.+|..... ..+|+.|++++|.+....+..+..+++|+.|+|++|.+
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY---GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT---TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCccccc---CccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 9998887655 5888899999999998888888776655 56899999999987765556788899999999999999
Q ss_pred cccCc-ccCCCCCCCEEECcCCCCccc-CccccCCCCCCEEEeccCCC-----------CCCceecCCcchhhh
Q 002125 769 REVPE-SLGQLSSVKNLVLTNNNLKRL-PESLNQLSSLEYLQLHLRSP-----------RKLTSLNLSVNLRNY 829 (963)
Q Consensus 769 ~~lp~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~-----------~~L~~L~l~~n~~~~ 829 (963)
+.++. .+..+++|+.|+|++|+++.+ |..+.++++|+.|+|++|.+ ++|+.|+|++|...|
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 87764 588899999999999999876 56788999999999986643 456666666665533
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=3.7e-23 Score=240.08 Aligned_cols=317 Identities=17% Similarity=0.207 Sum_probs=203.6
Q ss_pred ccccCCcccccccCCCcccccceeeeEEecCCccC-----CCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCc
Q 002125 535 SLPISIPFKDLVNFPSVTSCHVYTLELVKVGIKEL-----PSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEIS 609 (963)
Q Consensus 535 ~i~l~~~~~~~~~~~~f~~~~l~~L~~l~~~~~~l-----p~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls 609 (963)
.+.++.+....+....| .++++|+.|+++...+ |..|..+++|++|++++|...+..|..+.++++|++|+|+
T Consensus 34 ~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 34 YVDLSLNSIAELNETSF--SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp EEECCSSCCCEECTTTT--SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred EEEecCCccCcCChhHh--ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence 45555555555556677 7888888888876543 4568889999999999887777778888999999999999
Q ss_pred CCccccccCCCCccccCCCCccccccccc-cccccCcCCCcCCcc-ccCCCCCCeeecccccccccCCcccCCC--CCCc
Q 002125 610 NCSILKRFLEIPSCNIDGGIGIERLASCK-LVLEKCSSLQSLPSS-LCMFKSLTSLEIIDCQNFMMLPYELGNL--KALE 685 (963)
Q Consensus 610 ~n~~l~~~~~l~~~~l~~~~~l~~l~~L~-l~l~~~~~l~~lP~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l--~~L~ 685 (963)
+|........ . ..+..+..|+ |++.++.-....|.. +.++++|++|++++|.+.+..|..+.++ .+|+
T Consensus 112 ~n~l~~~~~~-------~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 112 QCNLDGAVLS-------G-NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TSCCBTHHHH-------S-STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred CCCCCccccC-------c-ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 9875321100 0 0011222333 334443322233554 6778888888888888887777766655 4555
Q ss_pred EEEecCccccccCcc---------ccCCCCCcEEEccCCCCCCCCCccccc-----------------------------
Q 002125 686 MLIVDGTAIREVPKS---------LNQLALLFRLKLKNCSELDGISSSIFS----------------------------- 727 (963)
Q Consensus 686 ~L~L~~n~l~~lp~~---------~~~l~~L~~L~L~~~~~l~~lp~~~~~----------------------------- 727 (963)
.|++++|.+..++.. +..+++|+.|++++|...+..|..+..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 666666655544321 223455666666665433322221110
Q ss_pred -------ccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCccc-Cccc
Q 002125 728 -------LCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLKRL-PESL 798 (963)
Q Consensus 728 -------l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l 798 (963)
-...++|+.|++++|.+.+..|..++.+++|+.|+|++|.++.+ |..++.+++|+.|+|++|.++.+ |..+
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 00135788888888888888888888888899999988888866 55788888899999988888877 4667
Q ss_pred cCCCCCCEEEeccCCCCCCceecCCc-chhhhHhhCchhhHHHHhccccccccceeeeecCCCC
Q 002125 799 NQLSSLEYLQLHLRSPRKLTSLNLSV-NLRNYLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 799 ~~l~~L~~L~L~~~~~~~L~~L~l~~-n~~~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~i 861 (963)
.++++|+.|+|++|....+..-.+.. ..+..+++++|.++++.+..+.....+..+.+.+|.+
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 88888888888875432110000110 0012234555566665555555666777888888876
No 20
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.90 E-value=6.9e-25 Score=208.12 Aligned_cols=131 Identities=19% Similarity=0.295 Sum_probs=90.9
Q ss_pred CCCCCcccEEEcCccccccCchHHHHHHHHhh--CCCceEEeC-CCCCCccchHHHHHHhhhcceeeeeeccCccchhhh
Q 002125 21 PRNSNKYGVFLSFRGEDTRDNFTSHLYSALCH--NNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWC 97 (963)
Q Consensus 21 ~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c 97 (963)
+...++|||||||+++|+ .||.+|+++|++ +|+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 345679999999999995 689999999998 599999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEeEeeeccCcc----cccccccchhhHhhhcCCch---hhhhhHHHHH
Q 002125 98 LDELSKILECKHDYGQIVIPVFCRVDPSH----VRRQTGTFGDYFSKLGKRYP---EKMHRWANAL 156 (963)
Q Consensus 98 ~~El~~~~~~~~~~~~~v~pvf~~v~p~~----vr~~~~~~~~~~~~~~~~~~---~~~~~w~~al 156 (963)
..|+..|+.+...+..+|+||||+|++.+ +|....... ..+...+. +.|.+|++|+
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 99999999987433347789999998554 444432221 12223333 6677776653
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.8e-23 Score=229.55 Aligned_cols=225 Identities=19% Similarity=0.261 Sum_probs=196.7
Q ss_pred CCCcccccceeeeEEecCC-----ccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCc
Q 002125 548 FPSVTSCHVYTLELVKVGI-----KELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPS 622 (963)
Q Consensus 548 ~~~f~~~~l~~L~~l~~~~-----~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~ 622 (963)
+..| .++++|+.|+++. ..+|..+..+++|++|++++|...+.+|..+.++++|++|+|++|.+..
T Consensus 69 ~~~l--~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~------- 139 (313)
T 1ogq_A 69 PSSL--ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG------- 139 (313)
T ss_dssp CGGG--GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-------
T ss_pred ChhH--hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-------
Confidence 3456 6777788887762 2578899999999999999988888999999999999999999986421
Q ss_pred cccCCCCccccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCC-CCcEEEecCcccc-ccCcc
Q 002125 623 CNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLK-ALEMLIVDGTAIR-EVPKS 700 (963)
Q Consensus 623 ~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~-~L~~L~L~~n~l~-~lp~~ 700 (963)
.+|..+..+++|++|++++|.+.+.+|..+++++ +|++|++++|.++ .+|..
T Consensus 140 --------------------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 140 --------------------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp --------------------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred --------------------------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 4677888899999999999999999999999998 9999999999998 78888
Q ss_pred ccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCc-ccCcccCCCC
Q 002125 701 LNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMR-EVPESLGQLS 779 (963)
Q Consensus 701 ~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 779 (963)
+..++ |+.|++++|...+..|..+.. +++|+.|++++|.+.+.+|. +..+++|++|+|++|.++ .+|.++..++
T Consensus 194 ~~~l~-L~~L~Ls~N~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLEGDASVLFGS---DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp GGGCC-CSEEECCSSEEEECCGGGCCT---TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred HhCCc-ccEEECcCCcccCcCCHHHhc---CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 99887 999999999877777777665 89999999999998877776 888999999999999998 8899999999
Q ss_pred CCCEEECcCCCCc-ccCccccCCCCCCEEEeccCC
Q 002125 780 SVKNLVLTNNNLK-RLPESLNQLSSLEYLQLHLRS 813 (963)
Q Consensus 780 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~ 813 (963)
+|+.|+|++|+++ .+|.. ..+++|+.|++++|.
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 9999999999998 67764 778888888887743
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2e-22 Score=235.36 Aligned_cols=244 Identities=20% Similarity=0.194 Sum_probs=171.2
Q ss_pred CCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCc
Q 002125 570 PSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQS 649 (963)
Q Consensus 570 p~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~ 649 (963)
|..|.++++|++|+|++|...+..|..+.++++|++|+|++|... .++...+.++ ..|+. |++.++.-...
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l---~~L~~--L~Ls~n~i~~~ 119 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK----LIPLGVFTGL---SNLTK--LDISENKIVIL 119 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC----SCCTTSSTTC---TTCCE--EECTTSCCCEE
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC----ccCcccccCC---CCCCE--EECCCCccccC
Confidence 346778888888888887666656777888888888888887532 2332222222 22222 33333333233
Q ss_pred CCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcccccc
Q 002125 650 LPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSSIFSL 728 (963)
Q Consensus 650 lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l 728 (963)
.|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.++.+|.. +.++++|+.|++++|......+..+..
T Consensus 120 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~- 198 (477)
T 2id5_A 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR- 198 (477)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCS-
T ss_pred ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhccc-
Confidence 455677788888888888887777777888888888888888888877653 778888888888887554433334433
Q ss_pred cCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCcccC-ccccCCCCCCE
Q 002125 729 CMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRLP-ESLNQLSSLEY 806 (963)
Q Consensus 729 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~ 806 (963)
+++|+.|++++|...+.+|.......+|+.|++++|.++.+|. .+..+++|+.|+|++|.++.++ ..+.++++|+.
T Consensus 199 --l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 199 --LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp --CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred --CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 7788888888888777777776666788888888888888773 5788888888888888888776 34778888888
Q ss_pred EEeccCC-----------CCCCceecCCcc
Q 002125 807 LQLHLRS-----------PRKLTSLNLSVN 825 (963)
Q Consensus 807 L~L~~~~-----------~~~L~~L~l~~n 825 (963)
|+|++|. +++|+.|+|++|
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCC
Confidence 8887543 455666666655
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=239.05 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=93.7
Q ss_pred CCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcc---cCcccCCCCCCCEEECcCCCCcc-cCcc-ccCCCCC
Q 002125 730 MFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMRE---VPESLGQLSSVKNLVLTNNNLKR-LPES-LNQLSSL 804 (963)
Q Consensus 730 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~Ls~n~l~~-lp~~-l~~l~~L 804 (963)
.+++|++|++++|.+.+.+|..++.+++|+.|++++|+++. +|..++.+++|+.|+|++|.++. +|.. +..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 47899999999999988889999999999999999999984 55778999999999999999997 8865 7889999
Q ss_pred CEEEeccCCC---------CCCceecCCcchhhhHhhCchhhHHHHhccccccccceeeeecCCCC
Q 002125 805 EYLQLHLRSP---------RKLTSLNLSVNLRNYLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 805 ~~L~L~~~~~---------~~L~~L~l~~n~~~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~i 861 (963)
+.|++++|.+ ++|+.|+++.| .++.+ +..+.....+..+.+.+|.+
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N----------~l~~i-p~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSN----------KIKSI-PKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSS----------CCCCC-CGGGGGCTTCCEEECCSSCC
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCC----------ccccc-chhhhcCCCCCEEECCCCcC
Confidence 9999998766 46777766665 33322 22222344455666666654
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.3e-22 Score=235.34 Aligned_cols=294 Identities=16% Similarity=0.168 Sum_probs=189.4
Q ss_pred eeeEEecCCc---cC-CCccccCCCCcEEeecCCCCcccc-ccccCCCCCccEEeCcCCccccccCCCCccccCCCCccc
Q 002125 558 TLELVKVGIK---EL-PSSIECLSNLKKLYIVDCSKLESI-SSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIE 632 (963)
Q Consensus 558 ~L~~l~~~~~---~l-p~~~~~L~~L~~L~L~~~~~~~~l-p~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~ 632 (963)
+|+.|+++.+ .+ |..+.++++|++|++++|...+.+ +..+.++++|++|+|++|.+....+ ..+ .
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~------~ 100 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET----GAF------N 100 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT----TTT------T
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh----hhc------c
Confidence 3455555443 33 567888888999999887766566 4567888899999998886532100 011 1
Q ss_pred cccccc-cccccCcCCCcCCcc--ccCCCCCCeeecccccccccCCcc-cCCCCCCcEEEecCcccccc-CccccCC--C
Q 002125 633 RLASCK-LVLEKCSSLQSLPSS--LCMFKSLTSLEIIDCQNFMMLPYE-LGNLKALEMLIVDGTAIREV-PKSLNQL--A 705 (963)
Q Consensus 633 ~l~~L~-l~l~~~~~l~~lP~~--~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L~~L~L~~n~l~~l-p~~~~~l--~ 705 (963)
.+..|+ |++.+|.--..+|.. +..+++|++|++++|.+.+..|.. ++++++|++|++++|.++.+ |..+..+ .
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 122222 333333222223333 666777777777777766666654 67777777777777777644 3345444 5
Q ss_pred CCcEEEccCCCCCCCCCcccc-----cccCCCCCcEEEccCCCCCCcCccccC---------------------------
Q 002125 706 LLFRLKLKNCSELDGISSSIF-----SLCMFKSLTSLEIIDCQNFMILPDELG--------------------------- 753 (963)
Q Consensus 706 ~L~~L~L~~~~~l~~lp~~~~-----~l~~l~~L~~L~l~~~~~~~~~p~~l~--------------------------- 753 (963)
+|+.|++++|.....-+..+. .+..+++|+.|++++|.+.+..|..+.
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 677777777644332221110 112357899999999987655443221
Q ss_pred ------------CCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCccc-CccccCCCCCCEEEeccCCCCCCce
Q 002125 754 ------------NLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLKRL-PESLNQLSSLEYLQLHLRSPRKLTS 819 (963)
Q Consensus 754 ------------~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~~~L~~ 819 (963)
..++|+.|++++|.++.+ |..++.+++|+.|+|++|.++.+ |..+.++++|+.|+|++|.+..+..
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 126899999999999854 67899999999999999999987 5679999999999998765422110
Q ss_pred ecCCc-chhhhHhhCchhhHHHHhccccccccceeeeecCCCC
Q 002125 820 LNLSV-NLRNYLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 820 L~l~~-n~~~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~i 861 (963)
-.+.. ..+..+++++|.+++..+..+.....+..+.+.+|.+
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 00110 0112335566677777777777778888999999876
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=6e-22 Score=219.42 Aligned_cols=163 Identities=18% Similarity=0.256 Sum_probs=125.5
Q ss_pred CCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcccc---ccCccccCCCCCcEEEccCCCCCCCCCc
Q 002125 647 LQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIR---EVPKSLNQLALLFRLKLKNCSELDGISS 723 (963)
Q Consensus 647 l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 723 (963)
+..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++ ..+..+..+++|+.|++++|. +..+|.
T Consensus 112 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~ 188 (330)
T 1xku_A 112 LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ 188 (330)
T ss_dssp CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS
T ss_pred CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCc
Confidence 345666553 68888888888877776777888888888888888876 345567888888888888874 445665
Q ss_pred ccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCcccCccccCCC
Q 002125 724 SIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRLPESLNQLS 802 (963)
Q Consensus 724 ~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 802 (963)
.+ .++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|.++.+|..+..++
T Consensus 189 ~~-----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 263 (330)
T 1xku_A 189 GL-----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263 (330)
T ss_dssp SC-----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS
T ss_pred cc-----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCC
Confidence 54 3688888888888777777788888888888888888886654 67888888888888888888888888888
Q ss_pred CCCEEEeccCCCCCC
Q 002125 803 SLEYLQLHLRSPRKL 817 (963)
Q Consensus 803 ~L~~L~L~~~~~~~L 817 (963)
+|+.|++++|.+..+
T Consensus 264 ~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 264 YIQVVYLHNNNISAI 278 (330)
T ss_dssp SCCEEECCSSCCCCC
T ss_pred CcCEEECCCCcCCcc
Confidence 888888887665543
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=8e-22 Score=223.81 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=76.1
Q ss_pred CCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEE
Q 002125 705 ALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNL 784 (963)
Q Consensus 705 ~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 784 (963)
++|+.|++++|...+ . ..+. .+++|+.|++++|.+.+..|..+..+++|+.|+|++|.++.+|..+..+++|+.|
T Consensus 226 ~~L~~L~l~~n~l~~-~-~~l~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 226 VELTILKLQHNNLTD-T-AWLL---NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300 (390)
T ss_dssp SSCCEEECCSSCCCC-C-GGGG---GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEE
T ss_pred ccccEEECCCCCCcc-c-HHHc---CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEE
Confidence 456666666664332 2 2233 3777888888888777777777788888888888888888777777777888888
Q ss_pred ECcCCCCcccCccccCCCCCCEEEeccCCC
Q 002125 785 VLTNNNLKRLPESLNQLSSLEYLQLHLRSP 814 (963)
Q Consensus 785 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 814 (963)
+|++|+++.+|..+..+++|+.|+|++|..
T Consensus 301 ~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 301 DLSHNHLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp ECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred ECCCCcceecCccccccCcCCEEECCCCcc
Confidence 888888888877777778888888876543
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=5.8e-22 Score=238.84 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=41.5
Q ss_pred ccccCCcccccccCCCcccccceeeeEEecCCccC----CCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcC
Q 002125 535 SLPISIPFKDLVNFPSVTSCHVYTLELVKVGIKEL----PSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISN 610 (963)
Q Consensus 535 ~i~l~~~~~~~~~~~~f~~~~l~~L~~l~~~~~~l----p~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~ 610 (963)
.+.++.+....+....| .++++|+.|+++.+.+ |..|.++++|++|++++|...+..|..++++++|++|+|++
T Consensus 36 ~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSF--SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp EEECTTSCCCEECTTTT--TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred EEECCCCCcCEeChhhc--cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 33444333334444455 5556666666554332 33556666666666666554444455666666666666666
Q ss_pred Ccc
Q 002125 611 CSI 613 (963)
Q Consensus 611 n~~ 613 (963)
|..
T Consensus 114 n~l 116 (606)
T 3vq2_A 114 TKL 116 (606)
T ss_dssp SCC
T ss_pred Ccc
Confidence 643
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=7.7e-22 Score=236.63 Aligned_cols=118 Identities=23% Similarity=0.230 Sum_probs=85.9
Q ss_pred CCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEE
Q 002125 705 ALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNL 784 (963)
Q Consensus 705 ~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 784 (963)
++|+.|+|++|...+ +..+. .+++|+.|++++|.+.+..|..++.+++|+.|+|++|.++.+|..+..+++|+.|
T Consensus 232 ~~L~~L~L~~n~l~~--~~~l~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 306 (597)
T 3oja_B 232 VELTILKLQHNNLTD--TAWLL---NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306 (597)
T ss_dssp SCCCEEECCSSCCCC--CGGGG---GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEE
T ss_pred CCCCEEECCCCCCCC--Chhhc---cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEE
Confidence 356666666654332 22333 3788888888888888877888888888888888888888888888888888888
Q ss_pred ECcCCCCcccCccccCCCCCCEEEeccCCC--------CCCceecCCcchh
Q 002125 785 VLTNNNLKRLPESLNQLSSLEYLQLHLRSP--------RKLTSLNLSVNLR 827 (963)
Q Consensus 785 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~--------~~L~~L~l~~n~~ 827 (963)
+|++|.++.+|..+..+++|+.|+|++|.+ ++|+.|++++|..
T Consensus 307 ~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 307 DLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp ECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred ECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 888888888888888888888888876654 3444455554433
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=6.3e-22 Score=247.01 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=130.1
Q ss_pred CCCcEEEecCcccccc-CccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccE
Q 002125 682 KALEMLIVDGTAIREV-PKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALET 760 (963)
Q Consensus 682 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~ 760 (963)
++|+.|++++|.+..+ |..+..+++|+.|+|++|...+..|..+.. +++|+.|++++|.+.+..|..+.++++|+.
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG---LDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT---CSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC---CCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 5788888888888755 455788888888888888665555555554 788999999998888877888888999999
Q ss_pred EEcCCCCCcccCc-ccCCCCCCCEEECcCCCCcccCc-----------------------------------------cc
Q 002125 761 LIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRLPE-----------------------------------------SL 798 (963)
Q Consensus 761 L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-----------------------------------------~l 798 (963)
|++++|.++.++. .+..+++|+.|+|++|.++.++. .+
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHH
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhh
Confidence 9999998887764 57888888888888887665431 12
Q ss_pred cCCCCCCEEEeccCCC------------CCCceecCCcchh-------------------hhHhhCchhhHHHHhccccc
Q 002125 799 NQLSSLEYLQLHLRSP------------RKLTSLNLSVNLR-------------------NYLKLDPNELSEIVKDGWMK 847 (963)
Q Consensus 799 ~~l~~L~~L~L~~~~~------------~~L~~L~l~~n~~-------------------~~~~l~~n~l~~~~~~~~~~ 847 (963)
.++++|+.|+|++|.+ ++|+.|+++.|.. ..+++++|.++++.+..+..
T Consensus 423 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 3567777777766543 3456666655532 12367788888887777777
Q ss_pred cccceeeeecCCCC
Q 002125 848 QSFAKSKYFPGNEI 861 (963)
Q Consensus 848 ~~~~~~~~~~g~~i 861 (963)
...+..+.+.+|.+
T Consensus 503 l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 503 LTALRGLSLNSNRL 516 (844)
T ss_dssp CCSCSEEEEESCCC
T ss_pred hhhhheeECCCCCC
Confidence 77788888888866
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1e-21 Score=234.07 Aligned_cols=97 Identities=22% Similarity=0.147 Sum_probs=82.3
Q ss_pred cCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccC---cccCCCCCCCEEECcCCCCcc-cCcc-ccCCCC
Q 002125 729 CMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVP---ESLGQLSSVKNLVLTNNNLKR-LPES-LNQLSS 803 (963)
Q Consensus 729 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~Ls~n~l~~-lp~~-l~~l~~ 803 (963)
..+++|++|++++|.+.+.+|..++++++|+.|++++|.++.+| ..++.+++|+.|+|++|.++. +|.. +..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 34789999999999998888889999999999999999998654 568999999999999999987 8865 788999
Q ss_pred CCEEEeccCCC---------CCCceecCCcc
Q 002125 804 LEYLQLHLRSP---------RKLTSLNLSVN 825 (963)
Q Consensus 804 L~~L~L~~~~~---------~~L~~L~l~~n 825 (963)
|+.|++++|.+ ++|+.|++++|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N 460 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSS
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCC
Confidence 99999998776 46677766665
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=8.6e-22 Score=218.31 Aligned_cols=160 Identities=24% Similarity=0.334 Sum_probs=122.3
Q ss_pred CCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcccc---ccCccccCCCCCcEEEccCCCCCCCCCc
Q 002125 647 LQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIR---EVPKSLNQLALLFRLKLKNCSELDGISS 723 (963)
Q Consensus 647 l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~L~~~~~l~~lp~ 723 (963)
+..+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++ ..|..+..+ +|+.|++++|. +..+|.
T Consensus 114 l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~ 189 (332)
T 2ft3_A 114 LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK 189 (332)
T ss_dssp CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS
T ss_pred CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCc
Confidence 445666554 78888888888877666666888888888888888886 335556666 88888888874 445666
Q ss_pred ccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCcccCccccCCC
Q 002125 724 SIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRLPESLNQLS 802 (963)
Q Consensus 724 ~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 802 (963)
.+ .++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|.++.+|..+..++
T Consensus 190 ~~-----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 264 (332)
T 2ft3_A 190 DL-----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK 264 (332)
T ss_dssp SS-----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCT
T ss_pred cc-----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCc
Confidence 54 3578888888888877777788888888888888888887664 67888888888888888888888888888
Q ss_pred CCCEEEeccCCCC
Q 002125 803 SLEYLQLHLRSPR 815 (963)
Q Consensus 803 ~L~~L~L~~~~~~ 815 (963)
+|+.|++++|...
T Consensus 265 ~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 265 LLQVVYLHTNNIT 277 (332)
T ss_dssp TCCEEECCSSCCC
T ss_pred cCCEEECCCCCCC
Confidence 8888888876554
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.1e-21 Score=232.51 Aligned_cols=170 Identities=18% Similarity=0.119 Sum_probs=96.3
Q ss_pred cCCCCCCcEEEecCcccccc---CccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCc-cccC
Q 002125 678 LGNLKALEMLIVDGTAIREV---PKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILP-DELG 753 (963)
Q Consensus 678 ~~~l~~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p-~~l~ 753 (963)
++.+++|++|++++|.++.+ |..+..+++|+.|++++|. +..+|..+.. +++|+.|++++|.+.+..| ..+.
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMG---LEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTT---CTTCCEEECTTSEEESTTTTTTTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccC---CCCCCeeECCCCccCCccChhhhh
Confidence 34455555566665555543 4555666666666666653 3334443333 5666666666666655555 4566
Q ss_pred CCCCccEEEcCCCCCcc-cCcccCCCCCCCEEECcCCCCcc--cCccccCCCCCCEEEeccCCC-----------CCCce
Q 002125 754 NLKALETLIIDGTAMRE-VPESLGQLSSVKNLVLTNNNLKR--LPESLNQLSSLEYLQLHLRSP-----------RKLTS 819 (963)
Q Consensus 754 ~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~~~~-----------~~L~~ 819 (963)
.+++|+.|++++|.+.. .|..++.+++|+.|+|++|.++. +|..++.+++|+.|+|++|.. ++|+.
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 66666666666666653 44556666666666666666654 455666666666666655332 22222
Q ss_pred ecCCcchhhhHhhCchhhHHHHhccccccccceeeeecCCCC
Q 002125 820 LNLSVNLRNYLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 820 L~l~~n~~~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~i 861 (963)
| ++++|.+++..+..+.....+..+.+.+|.+
T Consensus 502 L----------~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 502 L----------NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp E----------ECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred E----------ECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 2 3444555555555555555566666666654
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=3.5e-21 Score=235.31 Aligned_cols=220 Identities=19% Similarity=0.155 Sum_probs=158.3
Q ss_pred cccccCcCCCcCCccccCCCCCCeeecccccccccCC-cccCCCCCCcEEEecCccccccC-ccccCCCCCcEEEccCCC
Q 002125 639 LVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLP-YELGNLKALEMLIVDGTAIREVP-KSLNQLALLFRLKLKNCS 716 (963)
Q Consensus 639 l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~ 716 (963)
+++.++.-....|..+..+++|++|++++|.+.+.+| ..+.++++|++|++++|.+..++ ..+..+++|+.|++++|.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 3344443333346678888899999999988877666 67888999999999999888654 458888999999998886
Q ss_pred CC--CCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc---------ccCCCCCCCEEE
Q 002125 717 EL--DGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE---------SLGQLSSVKNLV 785 (963)
Q Consensus 717 ~l--~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~---------~l~~l~~L~~L~ 785 (963)
.. +.+|..+.. +++|+.|++++|.+.+..|..+.++++|+.|++++|.++.++. .++.+++|+.|+
T Consensus 466 l~~~~~~p~~~~~---l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 466 LKNVDSSPSPFQP---LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp CBCTTCSSCTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred ccccccCCccccc---CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 43 556766655 8899999999998888777788999999999999999886532 378889999999
Q ss_pred CcCCCCcccCc-cccCCCCCCEEEeccCCCCCCceecCCc-chhhhHhhCchhhHHHHhcccc-ccccceeeeecCCCC
Q 002125 786 LTNNNLKRLPE-SLNQLSSLEYLQLHLRSPRKLTSLNLSV-NLRNYLKLDPNELSEIVKDGWM-KQSFAKSKYFPGNEI 861 (963)
Q Consensus 786 Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~~~~L~~L~l~~-n~~~~~~l~~n~l~~~~~~~~~-~~~~~~~~~~~g~~i 861 (963)
|++|+++.+|. .+.++++|+.|+|++|++..+..-.+.. ..+..+++++|.++++.+..+. ....+..+.+.||++
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 99999999985 4789999999999876543221110110 0112334555666665554433 334556777888765
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=2.9e-21 Score=232.76 Aligned_cols=250 Identities=19% Similarity=0.188 Sum_probs=120.9
Q ss_pred ccceeeeEEecCC---ccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 554 CHVYTLELVKVGI---KELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 554 ~~l~~L~~l~~~~---~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
.++++|+.++++. ..+|..+..+++|++|++++|...+..|..+.++++|++|++++|..... ++...+. .
T Consensus 275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~---~ 348 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE---LGTGCLE---N 348 (606)
T ss_dssp TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB---CCSSTTT---T
T ss_pred ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc---cchhhhh---c
Confidence 4445555555433 23455555555566666655544444445555555666666655543211 1110111 1
Q ss_pred cccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcccccc-C-ccccCCCCCc
Q 002125 631 IERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREV-P-KSLNQLALLF 708 (963)
Q Consensus 631 l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l-p-~~~~~l~~L~ 708 (963)
+..|+.|.+.......+...|..+..+++|++|++++|.+.+..|..++++++|++|++++|.++.. | ..+.++++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 1112222222111111111244455555555555555555555555555555555555555555532 2 2255555555
Q ss_pred EEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCc---CccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEE
Q 002125 709 RLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMI---LPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNL 784 (963)
Q Consensus 709 ~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~---~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L 784 (963)
.|++++|...+..|..+.. +++|+.|++++|.+.+. .+..+..+++|+.|++++|.++.+ |..++.+++|+.|
T Consensus 429 ~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDG---LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp EEECTTCCCBTTCTTTTTT---CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred EEECCCCccCCcCHHHHhC---CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 5555555444433443333 55555555555555431 123455555555555555555544 3455555555555
Q ss_pred ECcCCCCccc-CccccCCCCCCEEEeccCC
Q 002125 785 VLTNNNLKRL-PESLNQLSSLEYLQLHLRS 813 (963)
Q Consensus 785 ~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~ 813 (963)
+|++|+++.+ |..+.++++| .|+|++|.
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 5555555543 3445555555 55555443
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.1e-21 Score=216.45 Aligned_cols=213 Identities=22% Similarity=0.330 Sum_probs=177.5
Q ss_pred ccceeeeEEecC---CccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 554 CHVYTLELVKVG---IKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 554 ~~l~~L~~l~~~---~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
.++.+|+.|+++ ...+|..++.+++|++|++++|... .+|..+.++++|++|+|++|...+.++.--
T Consensus 101 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~--------- 170 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL--------- 170 (328)
T ss_dssp GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCS---------
T ss_pred hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhH---------
Confidence 445566666554 4577889999999999999997654 899999999999999999986543211000
Q ss_pred cccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEE
Q 002125 631 IERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRL 710 (963)
Q Consensus 631 l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L 710 (963)
.. ..++..+.++++|++|++++|.+. .+|..++++++|++|++++|.++.+|..+..+++|+.|
T Consensus 171 ----~~-----------~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 171 ----AS-----------TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234 (328)
T ss_dssp ----EE-----------EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEE
T ss_pred ----hh-----------ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEE
Confidence 00 012233456999999999999876 88999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCc-ccCcccCCCCCCCEEECcCC
Q 002125 711 KLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMR-EVPESLGQLSSVKNLVLTNN 789 (963)
Q Consensus 711 ~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n 789 (963)
++++|...+.+|..+.. +++|+.|++++|...+.+|..++++++|+.|+|++|++. .+|.+++.+++|+.+++..+
T Consensus 235 ~Ls~n~~~~~~p~~~~~---l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGG---RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ECTTCTTCCBCCCCTTC---CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred ECcCCcchhhhHHHhcC---CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 99999999999988776 899999999999999999999999999999999998765 89999999999999999988
Q ss_pred CCcccC
Q 002125 790 NLKRLP 795 (963)
Q Consensus 790 ~l~~lp 795 (963)
.+..++
T Consensus 312 ~~~~l~ 317 (328)
T 4fcg_A 312 LQAQLD 317 (328)
T ss_dssp GSCC--
T ss_pred HHHHHh
Confidence 666554
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.3e-20 Score=210.23 Aligned_cols=230 Identities=23% Similarity=0.301 Sum_probs=103.8
Q ss_pred ccceeeeEEecCCccC---CCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 554 CHVYTLELVKVGIKEL---PSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 554 ~~l~~L~~l~~~~~~l---p~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
..+++|+.++++...+ |. +..+++|++|++++|. +..+| .+.++++|++|++++|.... ++ .
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n~i~~----~~--------~ 127 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNEDNISD----IS--------P 127 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTSCCCC----CG--------G
T ss_pred hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCCcccC----ch--------h
Confidence 4444444444443322 22 4555555555555543 22333 35555555555555553211 10 1
Q ss_pred cccccccc-cccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcE
Q 002125 631 IERLASCK-LVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFR 709 (963)
Q Consensus 631 l~~l~~L~-l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 709 (963)
+..+..|+ +++.+|..+..++. +..+++|++|++++|...+..+ +.++++|++|++++|.++.++. +..+++|+.
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 203 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHY 203 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCE
T ss_pred hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccce
Confidence 11122222 33333333333333 4445555555555554333222 4445555555555555554443 444555555
Q ss_pred EEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCC
Q 002125 710 LKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNN 789 (963)
Q Consensus 710 L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n 789 (963)
|++++|... .++. +. .+++|+.|++++|.+....+ +..+++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 204 L~l~~n~l~-~~~~-~~---~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 204 FTAYVNQIT-DITP-VA---NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN 275 (347)
T ss_dssp EECCSSCCC-CCGG-GG---GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS
T ss_pred eecccCCCC-CCch-hh---cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC
Confidence 555554322 2221 22 24555555555554433222 445555555555555555442 3445555555555555
Q ss_pred CCcccCccccCCCCCCEEEecc
Q 002125 790 NLKRLPESLNQLSSLEYLQLHL 811 (963)
Q Consensus 790 ~l~~lp~~l~~l~~L~~L~L~~ 811 (963)
.++.+| .+..+++|+.|++++
T Consensus 276 ~l~~~~-~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 276 QISDIS-VLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCCCCG-GGGGCTTCSEEECCS
T ss_pred ccCCCh-hhcCCCCCCEEECcC
Confidence 555443 344555555555544
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=1.7e-21 Score=231.77 Aligned_cols=288 Identities=21% Similarity=0.303 Sum_probs=197.2
Q ss_pred eeeEEecCCc---cC-CCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcccc
Q 002125 558 TLELVKVGIK---EL-PSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIER 633 (963)
Q Consensus 558 ~L~~l~~~~~---~l-p~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~ 633 (963)
.|+.++++.+ .+ |..+..+++|++|++++|...+..|..+.++++|++|+|++|.... ++.-.+.+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~------ 96 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS----LSSSWFGP------ 96 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS----CCHHHHTT------
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc----cCHHHhcc------
Confidence 4555555544 33 5689999999999999987777667889999999999999996432 22211222
Q ss_pred ccccc-cccccCcCCC--cCCccccCCCCCCeeecccccccccCC-cccCCCCCCcEEEecCccccc-cCccccC-----
Q 002125 634 LASCK-LVLEKCSSLQ--SLPSSLCMFKSLTSLEIIDCQNFMMLP-YELGNLKALEMLIVDGTAIRE-VPKSLNQ----- 703 (963)
Q Consensus 634 l~~L~-l~l~~~~~l~--~lP~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~n~l~~-lp~~~~~----- 703 (963)
+..|+ +++.++ .+. ..|..+.++++|++|++++|...+.+| ..++++++|++|++++|.++. .|..+.+
T Consensus 97 l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 97 LSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp CTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 23333 344443 233 356778999999999999998777776 589999999999999999984 5555554
Q ss_pred -------------------CCCCcEEEccCCCCCCCC--Cccccc--------------------------ccC------
Q 002125 704 -------------------LALLFRLKLKNCSELDGI--SSSIFS--------------------------LCM------ 730 (963)
Q Consensus 704 -------------------l~~L~~L~L~~~~~l~~l--p~~~~~--------------------------l~~------ 730 (963)
+++|+.|++++|...+.. |..+.. +..
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 456666666666433210 000000 000
Q ss_pred -----------------------------------------------------CCCCcEEEccCCCCCCcCcccc-CCCC
Q 002125 731 -----------------------------------------------------FKSLTSLEIIDCQNFMILPDEL-GNLK 756 (963)
Q Consensus 731 -----------------------------------------------------l~~L~~L~l~~~~~~~~~p~~l-~~l~ 756 (963)
+++|+.|++++|.+. .+|..+ ..++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 123444444444432 345444 4689
Q ss_pred CccEEEcCCCCCcc-cC---cccCCCCCCCEEECcCCCCcccC---ccccCCCCCCEEEeccCC----------CCCCce
Q 002125 757 ALETLIIDGTAMRE-VP---ESLGQLSSVKNLVLTNNNLKRLP---ESLNQLSSLEYLQLHLRS----------PRKLTS 819 (963)
Q Consensus 757 ~L~~L~L~~n~l~~-lp---~~l~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~L~~~~----------~~~L~~ 819 (963)
+|+.|++++|.++. +| ..++.+++|+.|+|++|+++.+| ..+..+++|+.|++++|. +++|+.
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRF 414 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCE
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccE
Confidence 99999999999984 33 44789999999999999999887 358999999999998774 356777
Q ss_pred ecCCcchh-----------hhHhhCchhhHHHHhccccccccceeeeecCCCC
Q 002125 820 LNLSVNLR-----------NYLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 820 L~l~~n~~-----------~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~i 861 (963)
|++++|.+ ..+++++|.+++.. .....+..+.+.+|.+
T Consensus 415 L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 415 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKL 463 (549)
T ss_dssp EECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred EECCCCCcccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCcc
Confidence 88877754 23356777776542 2345567788888865
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=228.14 Aligned_cols=130 Identities=19% Similarity=0.196 Sum_probs=97.5
Q ss_pred CCCCCCcEEEecCccccc-cCccccCCCCCcEEEccCCCCCC--CCCcccccccCCCCCcEEEccCCCCCCcCccc-cCC
Q 002125 679 GNLKALEMLIVDGTAIRE-VPKSLNQLALLFRLKLKNCSELD--GISSSIFSLCMFKSLTSLEIIDCQNFMILPDE-LGN 754 (963)
Q Consensus 679 ~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~L~~~~~l~--~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~-l~~ 754 (963)
..+++|++|++++|.++. +|..+.++++|+.|++++|...+ .+|..+.. +++|+.|++++|.+.+.+|.. +..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~---l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ---MKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT---CTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh---CCCCCEEECCCCcCCcccccchhcc
Confidence 567788888888888875 67778888888888888885543 33444444 788888888888877756653 777
Q ss_pred CCCccEEEcCCCCCc-ccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccCC
Q 002125 755 LKALETLIIDGTAMR-EVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLRS 813 (963)
Q Consensus 755 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 813 (963)
+++|+.|++++|.++ .+|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++|.
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc
Confidence 888888888888885 4555543 67888888888888888877788888888887654
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.8e-20 Score=209.08 Aligned_cols=281 Identities=21% Similarity=0.290 Sum_probs=212.0
Q ss_pred ccceeeeEEecCCc---cCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 554 CHVYTLELVKVGIK---ELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 554 ~~l~~L~~l~~~~~---~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
..+.+|+.+++.+. .+| .+..+++|++|++++|. +..++. +.++++|++|++++|.... ++ .
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~i~~----~~--------~ 105 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNKITD----IS--------A 105 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCC----CG--------G
T ss_pred hhcccccEEEEeCCccccch-hhhhcCCccEEEccCCc-cccchh-hhcCCcCCEEEccCCcccC----ch--------H
Confidence 45566666666554 444 48899999999999975 555665 8999999999999986422 21 1
Q ss_pred cccccccc-cccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcE
Q 002125 631 IERLASCK-LVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFR 709 (963)
Q Consensus 631 l~~l~~L~-l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 709 (963)
+..+..|+ +++.++ .+..+|. +..+++|++|++++|.....++. +.++++|++|++++|.+..++. +..+++|+.
T Consensus 106 ~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSE
T ss_pred HcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCE
Confidence 22233333 333333 3556666 78899999999999987776664 8999999999999999998876 889999999
Q ss_pred EEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCC
Q 002125 710 LKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNN 789 (963)
Q Consensus 710 L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n 789 (963)
|++++|.. ..++. +. .+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.+|. +..+++|+.|+|++|
T Consensus 182 L~l~~n~l-~~~~~-~~---~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 182 LSLNYNQI-EDISP-LA---SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN 253 (347)
T ss_dssp EECTTSCC-CCCGG-GG---GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred EEccCCcc-ccccc-cc---CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC
Confidence 99999954 45554 33 38999999999998776554 8889999999999999999887 999999999999999
Q ss_pred CCcccCccccCCCCCCEEEeccCCCCCCceecCCcchhhhHhhCchhhHHHHhccccccccceeeeecCCCCCC
Q 002125 790 NLKRLPESLNQLSSLEYLQLHLRSPRKLTSLNLSVNLRNYLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEIPK 863 (963)
Q Consensus 790 ~l~~lp~~l~~l~~L~~L~L~~~~~~~L~~L~l~~n~~~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~iP~ 863 (963)
.++.++ .+..+++|+.|++++|....+..+.-..+ +..+++++|.+++..+..+.....+..+.+.+|.+-.
T Consensus 254 ~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 254 QISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQ-LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTT-CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred ccCCCh-hHhcCCCcCEEEccCCccCCChhhcCCCC-CCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 999885 68999999999999876554422210011 1234556667766666555566677788888887644
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=1.1e-20 Score=225.15 Aligned_cols=129 Identities=18% Similarity=0.160 Sum_probs=74.3
Q ss_pred CCCCCCcEEEecCccccc-cCccccCCCCCcEEEccCCCCCCCCC---cccccccCCCCCcEEEccCCCCCCcCcc-ccC
Q 002125 679 GNLKALEMLIVDGTAIRE-VPKSLNQLALLFRLKLKNCSELDGIS---SSIFSLCMFKSLTSLEIIDCQNFMILPD-ELG 753 (963)
Q Consensus 679 ~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~L~~~~~l~~lp---~~~~~l~~l~~L~~L~l~~~~~~~~~p~-~l~ 753 (963)
+.+++|++|++++|.++. +|..+.++++|+.|++++|.. ..++ ..+.. +++|+.|++++|.+.+.+|. .+.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~---l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKN---MSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC-CBTTHHHHTTTT---CTTCCEEECTTSCCBSCCSSCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc-CCcccchhhhcC---CCCCCEEECCCCcCCCccChhhhc
Confidence 455666666666666663 455566666666666666633 2222 22222 56666666666666553443 355
Q ss_pred CCCCccEEEcCCCCCc-ccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccCC
Q 002125 754 NLKALETLIIDGTAMR-EVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLRS 813 (963)
Q Consensus 754 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 813 (963)
.+++|+.|++++|.++ .+|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++|.
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC
Confidence 6666666666666664 3333332 46666666666666666655566666666665543
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.2e-20 Score=208.81 Aligned_cols=237 Identities=16% Similarity=0.194 Sum_probs=184.1
Q ss_pred eeeEEecCC---ccCCC-ccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcccc
Q 002125 558 TLELVKVGI---KELPS-SIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIER 633 (963)
Q Consensus 558 ~L~~l~~~~---~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~ 633 (963)
.|+.++++. ..+|. .+.++++|++|++++|...+..|..+.++++|++|+|++|... .++.... ..
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~l~~~~~------~~ 122 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK----ELPEKMP------KT 122 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS----BCCSSCC------TT
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC----ccChhhc------cc
Confidence 344455544 44544 7889999999999998776666889999999999999998643 2222111 22
Q ss_pred ccccccccccCcCCCcCCc-cccCCCCCCeeeccccccc--ccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEE
Q 002125 634 LASCKLVLEKCSSLQSLPS-SLCMFKSLTSLEIIDCQNF--MMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRL 710 (963)
Q Consensus 634 l~~L~l~l~~~~~l~~lP~-~~~~l~~L~~L~L~~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L 710 (963)
|+.|. +.++ .+..+|. .+.++++|++|++++|.+. +..+..+.++++|++|++++|.++.+|..+. ++|+.|
T Consensus 123 L~~L~--l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L 197 (330)
T 1xku_A 123 LQELR--VHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTEL 197 (330)
T ss_dssp CCEEE--CCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEE
T ss_pred ccEEE--CCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEE
Confidence 33333 3333 3444444 4788999999999999875 3678889999999999999999999998764 899999
Q ss_pred EccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCC
Q 002125 711 KLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNN 790 (963)
Q Consensus 711 ~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~ 790 (963)
++++|...+..|..+.. +++|+.|++++|.+.+..+..+..+++|+.|+|++|.++.+|.++..+++|++|+|++|+
T Consensus 198 ~l~~n~l~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 198 HLDGNKITKVDAASLKG---LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp ECTTSCCCEECTGGGTT---CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC
T ss_pred ECCCCcCCccCHHHhcC---CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc
Confidence 99999765555666555 899999999999998888888999999999999999999999999999999999999999
Q ss_pred CcccCcc-ccC------CCCCCEEEeccC
Q 002125 791 LKRLPES-LNQ------LSSLEYLQLHLR 812 (963)
Q Consensus 791 l~~lp~~-l~~------l~~L~~L~L~~~ 812 (963)
++.+|.. +.. .++|+.|++++|
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred CCccChhhcCCcccccccccccceEeecC
Confidence 9998743 332 355556665544
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=225.11 Aligned_cols=133 Identities=16% Similarity=0.123 Sum_probs=64.9
Q ss_pred ccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCccccc-----------------ccCCCCCcEEEc
Q 002125 677 ELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFS-----------------LCMFKSLTSLEI 739 (963)
Q Consensus 677 ~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~-----------------l~~l~~L~~L~l 739 (963)
.+.++++|+.|++++|.++.+|..+..+ +|+.|++++|... .+|..... ...+++|+.|++
T Consensus 277 ~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l 354 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354 (570)
T ss_dssp TTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred hhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence 3444455555555555555555555555 5555555555322 33331100 012445555555
Q ss_pred cCCCCCCcC--ccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccC--ccccCCCCCCEEEecc
Q 002125 740 IDCQNFMIL--PDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLP--ESLNQLSSLEYLQLHL 811 (963)
Q Consensus 740 ~~~~~~~~~--p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~ 811 (963)
++|.+.+.. |..+.++++|+.|++++|.+..+|..+..+++|+.|++++|.++.++ ..+.++++|+.|+++.
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC
Confidence 555443322 34444555555555555555555544555555555555555555432 2345555555555543
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=2.3e-20 Score=211.80 Aligned_cols=240 Identities=17% Similarity=0.189 Sum_probs=149.9
Q ss_pred ceeeeEEecCC---ccCCCc-cccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcc
Q 002125 556 VYTLELVKVGI---KELPSS-IECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGI 631 (963)
Q Consensus 556 l~~L~~l~~~~---~~lp~~-~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l 631 (963)
+.+|+.+++.. ..+|.. +..+++|++|++++|...+..+..+..+++|++|+|++|.... ++.-.+.+ +
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~---l 116 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY----LPPHVFQN---V 116 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC----CCTTTTTT---C
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc----CCHHHhcC---C
Confidence 44444444443 455654 5778888888888866544445577888888888888876432 21111111 2
Q ss_pred ccccccccccccCcCCCcCCcc-ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEE
Q 002125 632 ERLASCKLVLEKCSSLQSLPSS-LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRL 710 (963)
Q Consensus 632 ~~l~~L~l~l~~~~~l~~lP~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L 710 (963)
..|+. |++.++ .+..+|.. +.++++|++|++++|.+.+..|..++++++|++|++++|.++.++ +..+++|+.|
T Consensus 117 ~~L~~--L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L 191 (390)
T 3o6n_A 117 PLLTV--LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHA 191 (390)
T ss_dssp TTCCE--EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEE
T ss_pred CCCCE--EECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--ccccccccee
Confidence 22222 333332 45567765 477888888888888887777777888888888888888887664 4556666666
Q ss_pred EccCCCCC------------------CCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc-
Q 002125 711 KLKNCSEL------------------DGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV- 771 (963)
Q Consensus 711 ~L~~~~~l------------------~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l- 771 (963)
++++|... ..+|.. .+++|+.|++++|.+.+. ..+..+++|+.|++++|.++.+
T Consensus 192 ~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 192 NVSYNLLSTLAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp ECCSSCCSEEECCSSCSEEECCSSCCCEEECC-----CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred ecccccccccCCCCcceEEECCCCeeeecccc-----ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence 66665321 111211 134566666666665442 3466667777777777766644
Q ss_pred CcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccCCC
Q 002125 772 PESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLRSP 814 (963)
Q Consensus 772 p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 814 (963)
|..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|.+
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp SGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCC
T ss_pred hhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcc
Confidence 5566667777777777777776666666667777777766543
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=2.3e-20 Score=216.93 Aligned_cols=147 Identities=26% Similarity=0.396 Sum_probs=74.4
Q ss_pred ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCC
Q 002125 654 LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKS 733 (963)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~ 733 (963)
+.++++|++|++++|.+... + .+.++++|++|++++|.++.++. ++.+++|+.|++++|.. ..++ .+ ..+++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~l---~~l~~ 244 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQL-KDIG-TL---ASLTN 244 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCG-GG---GGCTT
T ss_pred hccCCCCCEEECcCCcCCCC-h-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCc-ccch-hh---hcCCC
Confidence 44555555555555553322 2 34555555555555555554433 44555555555555532 2222 12 22555
Q ss_pred CcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccC
Q 002125 734 LTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLR 812 (963)
Q Consensus 734 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 812 (963)
|+.|++++|.+.+..| +..+++|+.|++++|.++.+|. +..+++|+.|+|++|.++.+|. +..+++|+.|+|++|
T Consensus 245 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN 319 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS
T ss_pred CCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCC
Confidence 5555555555444333 4555555555555555555444 5555555555555555555443 455555555555443
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=4.5e-21 Score=209.90 Aligned_cols=208 Identities=21% Similarity=0.254 Sum_probs=102.4
Q ss_pred ccCCCccccCCCCcEEeecCCCCccccccc-cCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCc
Q 002125 567 KELPSSIECLSNLKKLYIVDCSKLESISSS-IFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCS 645 (963)
Q Consensus 567 ~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~-~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~ 645 (963)
..+|..+. ++|++|++++|. +..+|.. +.++++|++|+|++|....
T Consensus 20 ~~ip~~~~--~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~------------------------------ 66 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSF------------------------------ 66 (306)
T ss_dssp SSCCSCCC--TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCE------------------------------
T ss_pred ccCCCCCC--CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCc------------------------------
Confidence 44554332 457777777654 3355543 5667777777777764311
Q ss_pred CCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCc--cccCCCCCcEEEccCCCCCCCCCc
Q 002125 646 SLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPK--SLNQLALLFRLKLKNCSELDGISS 723 (963)
Q Consensus 646 ~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~~~~l~~lp~ 723 (963)
+...|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.++.++. .+..+++|+.|++++|...+..+.
T Consensus 67 -~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 144 (306)
T 2z66_A 67 -KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144 (306)
T ss_dssp -EEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT
T ss_pred -ccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh
Confidence 0011222333455555555554433 234444555555555555555554432 344555555555555543333333
Q ss_pred ccccccCCCCCcEEEccCCCCCC-cCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCcccCc-cccC
Q 002125 724 SIFSLCMFKSLTSLEIIDCQNFM-ILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLKRLPE-SLNQ 800 (963)
Q Consensus 724 ~~~~l~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~ 800 (963)
.+.. +++|++|++++|.+.+ .+|..+..+++|+.|++++|.++.+ |..+..+++|+.|+|++|.++.+|. .+..
T Consensus 145 ~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 145 IFNG---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp TTTT---CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred hccc---CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 3322 4455555555554443 3444455555555555555555544 3445555555555555555554442 3445
Q ss_pred CCCCCEEEeccC
Q 002125 801 LSSLEYLQLHLR 812 (963)
Q Consensus 801 l~~L~~L~L~~~ 812 (963)
+++|+.|+|++|
T Consensus 222 l~~L~~L~L~~N 233 (306)
T 2z66_A 222 LNSLQVLDYSLN 233 (306)
T ss_dssp CTTCCEEECTTS
T ss_pred cccCCEeECCCC
Confidence 555555555443
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=1.8e-20 Score=216.88 Aligned_cols=160 Identities=21% Similarity=0.304 Sum_probs=108.3
Q ss_pred cCCcc-ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecC-ccccccCc-cccCCCCCcEEEccCCCCCCCCCccc
Q 002125 649 SLPSS-LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDG-TAIREVPK-SLNQLALLFRLKLKNCSELDGISSSI 725 (963)
Q Consensus 649 ~lP~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~-n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~~ 725 (963)
.+|.. +..+++|++|+|++|.+....+..+.++++|++|++++ +.+..+|. .+.++++|+.|++++|. +..+|. +
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~ 214 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-L 214 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-C
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc-c
Confidence 34433 56677777777777776655555677777777777776 45556655 36677777777777774 344443 2
Q ss_pred ccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCcccCcc-ccCCCC
Q 002125 726 FSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLKRLPES-LNQLSS 803 (963)
Q Consensus 726 ~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~ 803 (963)
..+++|+.|++++|.+.+..|..|.++++|+.|+|++|.++.+ |..|..+++|+.|+|++|+|+.+|.. +..+++
T Consensus 215 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 215 ---TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp ---TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred ---cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 2367777777777777777777777777777777777777755 45577777777777777777777643 566677
Q ss_pred CCEEEeccCC
Q 002125 804 LEYLQLHLRS 813 (963)
Q Consensus 804 L~~L~L~~~~ 813 (963)
|+.|+|++|.
T Consensus 292 L~~L~L~~Np 301 (452)
T 3zyi_A 292 LVELHLHHNP 301 (452)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCC
Confidence 7777766653
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=9.1e-21 Score=226.61 Aligned_cols=179 Identities=19% Similarity=0.196 Sum_probs=108.8
Q ss_pred CCCCCCcEEEecCcccccc---CccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCc-cccCC
Q 002125 679 GNLKALEMLIVDGTAIREV---PKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILP-DELGN 754 (963)
Q Consensus 679 ~~l~~L~~L~L~~n~l~~l---p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p-~~l~~ 754 (963)
..+++|++|++++|.++.+ |..+..+++|+.|++++|.. ..+|..+.. +++|+.|++++|.+.+..| ..+.+
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLG---LEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEET---CTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc-ccccccccc---cCCCCEEEccCCccccccchhhhhc
Confidence 4567777777777777644 55677777777777777743 334443333 6777777777777666544 45667
Q ss_pred CCCccEEEcCCCCCcc-cCcccCCCCCCCEEECcCCCCc--ccCccccCCCCCCEEEeccCCCCCCceecCCc-chhhhH
Q 002125 755 LKALETLIIDGTAMRE-VPESLGQLSSVKNLVLTNNNLK--RLPESLNQLSSLEYLQLHLRSPRKLTSLNLSV-NLRNYL 830 (963)
Q Consensus 755 l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~~~~~~L~~L~l~~-n~~~~~ 830 (963)
+++|+.|++++|.+.. .|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|....+..-.+.. ..+..+
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 7777777777777764 4556677777777777777765 46777777777777777654322110000100 001222
Q ss_pred hhCchhhHHHHhccccccccceeeeecCCCC
Q 002125 831 KLDPNELSEIVKDGWMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 831 ~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~i 861 (963)
++++|.++++.+..+.....+..+.+.+|.+
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 3444555555555555555666777777765
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=1.2e-20 Score=206.62 Aligned_cols=223 Identities=22% Similarity=0.248 Sum_probs=180.3
Q ss_pred ccceeeeEEecCCccCCCc-cccCCCCcEEeecCCCCc--cccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 554 CHVYTLELVKVGIKELPSS-IECLSNLKKLYIVDCSKL--ESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 554 ~~l~~L~~l~~~~~~lp~~-~~~L~~L~~L~L~~~~~~--~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
.+++.|.+-......+|.. +..+++|++|++++|... +..|..+..+++|++|+|++|..
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i----------------- 90 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV----------------- 90 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE-----------------
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc-----------------
Confidence 4455555444455566764 789999999999997644 23366777899999999999853
Q ss_pred cccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCC-cccCCCCCCcEEEecCcccccc-CccccCCCCCc
Q 002125 631 IERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLP-YELGNLKALEMLIVDGTAIREV-PKSLNQLALLF 708 (963)
Q Consensus 631 l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~ 708 (963)
..+|..+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+..+ |..+..+++|+
T Consensus 91 -----------------~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 91 -----------------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp -----------------EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred -----------------ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 2466667789999999999998776654 5789999999999999999854 55688999999
Q ss_pred EEEccCCCCCC-CCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEEC
Q 002125 709 RLKLKNCSELD-GISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVL 786 (963)
Q Consensus 709 ~L~L~~~~~l~-~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L 786 (963)
.|++++|...+ .+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|+.|+|
T Consensus 154 ~L~l~~n~l~~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDIFTE---LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp EEECTTCEEGGGEECSCCTT---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred EEECCCCccccccchhHHhh---CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 99999996654 46666655 8999999999999988888899999999999999999998765 6899999999999
Q ss_pred cCCCCccc-CccccCCC-CCCEEEeccCC
Q 002125 787 TNNNLKRL-PESLNQLS-SLEYLQLHLRS 813 (963)
Q Consensus 787 s~n~l~~l-p~~l~~l~-~L~~L~L~~~~ 813 (963)
++|.++.+ |..+..++ +|+.|+|++|.
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999875 56677774 78888877654
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=3.6e-20 Score=226.36 Aligned_cols=301 Identities=20% Similarity=0.178 Sum_probs=184.9
Q ss_pred eeEEecCCccC----CCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccc-----cCCCCccccCCCC
Q 002125 559 LELVKVGIKEL----PSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKR-----FLEIPSCNIDGGI 629 (963)
Q Consensus 559 L~~l~~~~~~l----p~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~-----~~~l~~~~l~~~~ 629 (963)
|+.++++.+.+ |..+..+++|++|++++|...+..|..+.++++|++|++++|..... ++.+....+.++.
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 66666554432 34566667777777776665555566666667777777665432110 0111111111111
Q ss_pred c------------------cccccccc-cccccCc-CCCcCCcc-ccC--CCCCCeeecccccccccCCcccCCCCCCcE
Q 002125 630 G------------------IERLASCK-LVLEKCS-SLQSLPSS-LCM--FKSLTSLEIIDCQNFMMLPYELGNLKALEM 686 (963)
Q Consensus 630 ~------------------l~~l~~L~-l~l~~~~-~l~~lP~~-~~~--l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 686 (963)
+ +..+..|+ +++.++. .+..+|.. +.. .++|+.|++++|.+.+..|..+.++++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 1 11122222 2233221 12222221 111 246777777777777777778888888888
Q ss_pred EEecCcccc-ccC-ccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCC--CcCccccCCCCCccEEE
Q 002125 687 LIVDGTAIR-EVP-KSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNF--MILPDELGNLKALETLI 762 (963)
Q Consensus 687 L~L~~n~l~-~lp-~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~--~~~p~~l~~l~~L~~L~ 762 (963)
|++++|.++ .+| ..+..+++|+.|++++|......+..+.. +++|+.|++++|... +.+|..+.++++|+.|+
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL---VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTT---CTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhc---CcccccchhccccccccccCCcccccCCCCCEEE
Confidence 888888886 455 45778888888888888654444444443 778888888888764 56777888888888888
Q ss_pred cCCCCCcccCc-ccCCCCCCCEEECcCCCCcccCc---------cccCCCCCCEEEeccCCCCCCceecCCc-chhhhHh
Q 002125 763 IDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRLPE---------SLNQLSSLEYLQLHLRSPRKLTSLNLSV-NLRNYLK 831 (963)
Q Consensus 763 L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~---------~l~~l~~L~~L~L~~~~~~~L~~L~l~~-n~~~~~~ 831 (963)
+++|.++.+|. .+..+++|+.|+|++|.++.++. .+.++++|+.|+|++|.+..+..-.+.. ..+..++
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 88888887765 47888888888888888876532 2678888888888765443221100110 0012335
Q ss_pred hCchhhHHHHhccccccccceeeeecCCCCC
Q 002125 832 LDPNELSEIVKDGWMKQSFAKSKYFPGNEIP 862 (963)
Q Consensus 832 l~~n~l~~~~~~~~~~~~~~~~~~~~g~~iP 862 (963)
+++|.++++.+..+.....+..+.+.+|.+.
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 6667788776666666777888899998763
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=9.7e-21 Score=227.06 Aligned_cols=279 Identities=17% Similarity=0.173 Sum_probs=182.7
Q ss_pred cceeeeEEecCCc---cCCC-ccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 555 HVYTLELVKVGIK---ELPS-SIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 555 ~l~~L~~l~~~~~---~lp~-~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
.+.+++.+.+... .+|. .+..+++|++|+|++|...+..|..+..+++|++|+|++|.+.. ++...+.+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~--- 121 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY----LPPHVFQN--- 121 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC----CCTTTTTT---
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC----CCHHHHcC---
Confidence 4555666666543 4455 35778888888888876555555678888888888888876422 22212222
Q ss_pred cccccccc-cccccCcCCCcCCcc-ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCc
Q 002125 631 IERLASCK-LVLEKCSSLQSLPSS-LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLF 708 (963)
Q Consensus 631 l~~l~~L~-l~l~~~~~l~~lP~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~ 708 (963)
+..|+ |++.++ .+..+|.. +.++++|++|+|++|.+.+..|..++++++|++|++++|.++.++ ++.+++|+
T Consensus 122 ---l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~ 195 (597)
T 3oja_B 122 ---VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLF 195 (597)
T ss_dssp ---CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCS
T ss_pred ---CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhh
Confidence 22232 333333 45567765 477888888888888888878888888888888888888888765 44566666
Q ss_pred EEEccCCCCC------------------CCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcc
Q 002125 709 RLKLKNCSEL------------------DGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMRE 770 (963)
Q Consensus 709 ~L~L~~~~~l------------------~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~ 770 (963)
.|++++|... ..+|..+ .++|+.|++++|.+.+ +..++.+++|+.|+|++|.++.
T Consensus 196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~-----~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp EEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC-----CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred hhhcccCccccccCCchhheeeccCCccccccccc-----CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 6666655321 1222211 3467777887777665 3567788888888888888875
Q ss_pred c-CcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccCCCCCCceecCCcchh-----hhHhhCchhhHHHHhcc
Q 002125 771 V-PESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLRSPRKLTSLNLSVNLR-----NYLKLDPNELSEIVKDG 844 (963)
Q Consensus 771 l-p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~~~L~~L~l~~n~~-----~~~~l~~n~l~~~~~~~ 844 (963)
+ |..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+..+ + ..+. ..+++++|.++++.
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i---~--~~~~~l~~L~~L~L~~N~l~~~~--- 340 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV---E--RNQPQFDRLENLYLDHNSIVTLK--- 340 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC---G--GGHHHHTTCSEEECCSSCCCCCC---
T ss_pred CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc---C--cccccCCCCCEEECCCCCCCCcC---
Confidence 5 6778888888888888888888887777888888888887654321 1 1111 22345556665442
Q ss_pred ccccccceeeeecCCCC
Q 002125 845 WMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 845 ~~~~~~~~~~~~~g~~i 861 (963)
+.....+..+.+.||.+
T Consensus 341 ~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 341 LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCTTCCCSEEECCSSCE
T ss_pred hhhcCCCCEEEeeCCCC
Confidence 22334455677777765
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.6e-20 Score=208.08 Aligned_cols=237 Identities=19% Similarity=0.249 Sum_probs=185.3
Q ss_pred eeeEEecCC---ccC-CCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcccc
Q 002125 558 TLELVKVGI---KEL-PSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIER 633 (963)
Q Consensus 558 ~L~~l~~~~---~~l-p~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~ 633 (963)
.|+.++++. ..+ |..+.++++|++|++++|...+..|..+.++++|++|+|++|... .++.... ..
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~------~~ 124 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV----EIPPNLP------SS 124 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC----SCCSSCC------TT
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC----ccCcccc------cc
Confidence 344455544 444 447899999999999998776666888999999999999998643 2332111 22
Q ss_pred ccccccccccCcCCCcCCc-cccCCCCCCeeeccccccc--ccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEE
Q 002125 634 LASCKLVLEKCSSLQSLPS-SLCMFKSLTSLEIIDCQNF--MMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRL 710 (963)
Q Consensus 634 l~~L~l~l~~~~~l~~lP~-~~~~l~~L~~L~L~~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L 710 (963)
|..|.+ .+ +.+..+|. .+..+++|++|++++|.+. +..|..+..+ +|++|++++|.++.+|..+. ++|+.|
T Consensus 125 L~~L~l--~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L 198 (332)
T 2ft3_A 125 LVELRI--HD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNEL 198 (332)
T ss_dssp CCEEEC--CS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCC
T ss_pred CCEEEC--CC-CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEE
Confidence 333333 33 24455665 4788999999999999885 4678888888 99999999999999998764 799999
Q ss_pred EccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCC
Q 002125 711 KLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNN 790 (963)
Q Consensus 711 ~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~ 790 (963)
++++|...+..+..+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|+.|+|++|.
T Consensus 199 ~l~~n~i~~~~~~~l~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLR---YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp BCCSSCCCCCCTTSSTT---CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCccCHHHhcC---CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 99999666555566655 899999999999998888888999999999999999999999999999999999999999
Q ss_pred CcccCcc-ccC------CCCCCEEEeccCC
Q 002125 791 LKRLPES-LNQ------LSSLEYLQLHLRS 813 (963)
Q Consensus 791 l~~lp~~-l~~------l~~L~~L~L~~~~ 813 (963)
++.+|.. +.. .++|+.|++++|.
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCccChhHccccccccccccccceEeecCc
Confidence 9998743 433 3566777776543
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=3.4e-20 Score=213.81 Aligned_cols=160 Identities=21% Similarity=0.339 Sum_probs=110.9
Q ss_pred cCCc-cccCCCCCCeeecccccccccCCcccCCCCCCcEEEecC-ccccccCc-cccCCCCCcEEEccCCCCCCCCCccc
Q 002125 649 SLPS-SLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDG-TAIREVPK-SLNQLALLFRLKLKNCSELDGISSSI 725 (963)
Q Consensus 649 ~lP~-~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~-n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~~ 725 (963)
.+|. .+..+++|++|+|++|.+....+..+.++++|++|++++ +.+..+|. .+.++++|+.|++++| .+..+|. +
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~-~ 203 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN-L 203 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC-C
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc-c
Confidence 4443 366677777777777776666666777777777777777 44555655 4677777777777777 3445553 2
Q ss_pred ccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCcccCcc-ccCCCC
Q 002125 726 FSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLKRLPES-LNQLSS 803 (963)
Q Consensus 726 ~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~ 803 (963)
..+++|+.|++++|.+.+..|..|.++++|+.|+|++|.++.+ |..|..+++|+.|+|++|+++.+|.. +..+++
T Consensus 204 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 204 ---TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp ---TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred ---CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 2367777777777777777777777777777777777777755 34577777777777777777777643 566777
Q ss_pred CCEEEeccCC
Q 002125 804 LEYLQLHLRS 813 (963)
Q Consensus 804 L~~L~L~~~~ 813 (963)
|+.|+|++|.
T Consensus 281 L~~L~L~~Np 290 (440)
T 3zyj_A 281 LERIHLHHNP 290 (440)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEcCCCC
Confidence 7777766543
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=9e-20 Score=211.95 Aligned_cols=280 Identities=21% Similarity=0.247 Sum_probs=201.6
Q ss_pred ccceeeeEEecCCccC---CCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 554 CHVYTLELVKVGIKEL---PSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 554 ~~l~~L~~l~~~~~~l---p~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
..+.+|+.|+++...+ |. +..+++|++|++++|... .++. +.++++|++|++++|.... ++ .
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~l~~----~~--------~ 129 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNNQITD----ID--------P 129 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC----CG--------G
T ss_pred hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccc-cChh-hcCCCCCCEEECCCCCCCC----Ch--------H
Confidence 6667777777766543 43 788888999999886544 4444 8888889999998875322 11 1
Q ss_pred cccccccc-cccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcE
Q 002125 631 IERLASCK-LVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFR 709 (963)
Q Consensus 631 l~~l~~L~-l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 709 (963)
+..+..|+ |++.+| .+..+|. +..+++|++|++++ ...+ ++ .++++++|++|++++|.++.++. +..+++|+.
T Consensus 130 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~-~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 203 (466)
T 1o6v_A 130 LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGN-QVTD-LK-PLANLTTLERLDISSNKVSDISV-LAKLTNLES 203 (466)
T ss_dssp GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEE-SCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSE
T ss_pred HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCC-cccC-ch-hhccCCCCCEEECcCCcCCCChh-hccCCCCCE
Confidence 22233333 333333 2444554 77889999999864 3333 33 38899999999999999988764 889999999
Q ss_pred EEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCC
Q 002125 710 LKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNN 789 (963)
Q Consensus 710 L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n 789 (963)
|++++|...+..| +. .+++|+.|++++|.+.+. ..+..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 204 L~l~~n~l~~~~~--~~---~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 204 LIATNNQISDITP--LG---ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 275 (466)
T ss_dssp EECCSSCCCCCGG--GG---GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred EEecCCccccccc--cc---ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCC
Confidence 9999996554433 33 389999999999987653 357889999999999999998876 899999999999999
Q ss_pred CCcccCccccCCCCCCEEEeccCC---------CCCCceecCCcchhh------------hHhhCchhhHHHHhcccccc
Q 002125 790 NLKRLPESLNQLSSLEYLQLHLRS---------PRKLTSLNLSVNLRN------------YLKLDPNELSEIVKDGWMKQ 848 (963)
Q Consensus 790 ~l~~lp~~l~~l~~L~~L~L~~~~---------~~~L~~L~l~~n~~~------------~~~l~~n~l~~~~~~~~~~~ 848 (963)
.++.+|. +..+++|+.|++++|. +++|+.|+++.|... .+++++|.+++. ..+...
T Consensus 276 ~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l 352 (466)
T 1o6v_A 276 QISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANL 352 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred ccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccC
Confidence 9999886 8899999999998765 466777887777441 124556666554 233444
Q ss_pred ccceeeeecCCCCCCCc
Q 002125 849 SFAKSKYFPGNEIPKWF 865 (963)
Q Consensus 849 ~~~~~~~~~g~~iP~w~ 865 (963)
..+..+.+.+|.+-.+.
T Consensus 353 ~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 353 TNINWLSAGHNQISDLT 369 (466)
T ss_dssp TTCCEEECCSSCCCBCG
T ss_pred CCCCEEeCCCCccCccc
Confidence 55666677777664443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=6.4e-20 Score=198.49 Aligned_cols=209 Identities=20% Similarity=0.261 Sum_probs=169.2
Q ss_pred ccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcC
Q 002125 567 KELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSS 646 (963)
Q Consensus 567 ~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~ 646 (963)
..+|..+ .++|++|++++|...+..+..+.++++|++|+|++|.+..
T Consensus 24 ~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~------------------------------- 70 (285)
T 1ozn_A 24 QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR------------------------------- 70 (285)
T ss_dssp SSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-------------------------------
T ss_pred ccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce-------------------------------
Confidence 4455543 4679999999976655555678999999999999885321
Q ss_pred CCcCCccccCCCCCCeeeccccc-ccccCCcccCCCCCCcEEEecCcccccc-CccccCCCCCcEEEccCCCCCCCCCcc
Q 002125 647 LQSLPSSLCMFKSLTSLEIIDCQ-NFMMLPYELGNLKALEMLIVDGTAIREV-PKSLNQLALLFRLKLKNCSELDGISSS 724 (963)
Q Consensus 647 l~~lP~~~~~l~~L~~L~L~~~~-~~~~~p~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~ 724 (963)
..|..+..+++|++|++++|. +....|..+.++++|++|++++|.++.+ |..+.++++|+.|++++|......+..
T Consensus 71 --~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 148 (285)
T 1ozn_A 71 --IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148 (285)
T ss_dssp --ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred --eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH
Confidence 125567789999999999997 4444578899999999999999999977 556889999999999998654333333
Q ss_pred cccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCcccCc-cccCCC
Q 002125 725 IFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLKRLPE-SLNQLS 802 (963)
Q Consensus 725 ~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~ 802 (963)
+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+ |..+..+++|+.|+|++|.++.+|. .+..++
T Consensus 149 ~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 149 FRD---LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTT---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred hcc---CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 444 88999999999988776666799999999999999999966 7889999999999999999999884 488888
Q ss_pred CCCEEEeccCC
Q 002125 803 SLEYLQLHLRS 813 (963)
Q Consensus 803 ~L~~L~L~~~~ 813 (963)
+|+.|+|++|.
T Consensus 226 ~L~~L~l~~N~ 236 (285)
T 1ozn_A 226 ALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSC
T ss_pred ccCEEeccCCC
Confidence 88888888754
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=6.6e-20 Score=212.20 Aligned_cols=225 Identities=26% Similarity=0.322 Sum_probs=186.5
Q ss_pred ccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcC
Q 002125 567 KELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSS 646 (963)
Q Consensus 567 ~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~ 646 (963)
..+|..+. ++|++|+|++|+..+..|..+.++++|++|+|++|.+..
T Consensus 67 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------------------- 113 (452)
T 3zyi_A 67 SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ------------------------------- 113 (452)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-------------------------------
T ss_pred CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-------------------------------
Confidence 45666553 579999999987777667889999999999999985321
Q ss_pred CCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCc-cccCCCCCcEEEccCCCCCCCCCccc
Q 002125 647 LQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPK-SLNQLALLFRLKLKNCSELDGISSSI 725 (963)
Q Consensus 647 l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~~ 725 (963)
..|..+.++++|++|+|++|.+.+..+..+.++++|++|+|++|.++.+|. .+.++++|+.|++++|+.++.++...
T Consensus 114 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~ 191 (452)
T 3zyi_A 114 --IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191 (452)
T ss_dssp --ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred --cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh
Confidence 123557789999999999999887777779999999999999999998876 58899999999999988888887643
Q ss_pred ccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCccc-CccccCCCC
Q 002125 726 FSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLKRL-PESLNQLSS 803 (963)
Q Consensus 726 ~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~ 803 (963)
+..+++|+.|++++|.+.+. | .+..+++|+.|+|++|.++.+ |..|..+++|+.|+|++|.++.+ |..+.++++
T Consensus 192 --~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 192 --FEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp --TTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred --ccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 23489999999999987654 4 488899999999999999976 67899999999999999999987 466899999
Q ss_pred CCEEEeccCC-----------CCCCceecCCcchhhhH
Q 002125 804 LEYLQLHLRS-----------PRKLTSLNLSVNLRNYL 830 (963)
Q Consensus 804 L~~L~L~~~~-----------~~~L~~L~l~~n~~~~~ 830 (963)
|+.|+|++|. +++|+.|+|++|...|.
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 9999998664 45677888888877543
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=6.5e-20 Score=211.61 Aligned_cols=221 Identities=16% Similarity=0.125 Sum_probs=165.8
Q ss_pred ccceeeeEEecCCcc---CCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 554 CHVYTLELVKVGIKE---LPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 554 ~~l~~L~~l~~~~~~---lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
.++.+|+.++++... +| .+..+++|++|++++|.. ..+| ++.+++|++|++++|.+.. ++ +. .
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l-~~~~--~~~l~~L~~L~Ls~N~l~~----~~---~~---~ 104 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNKLTN----LD---VT---P 104 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSSCCSC----CC---CT---T
T ss_pred hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcC-CeEc--cccCCCCCEEECcCCCCce----ee---cC---C
Confidence 566677777776544 44 688899999999998764 4455 8889999999999986432 11 21 2
Q ss_pred cccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCc-cccccCccccCCCCCcE
Q 002125 631 IERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGT-AIREVPKSLNQLALLFR 709 (963)
Q Consensus 631 l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~ 709 (963)
+..|+.| ++.++ .+..+| ++.+++|++|++++|.+.+. | ++++++|++|++++| .+..+ .+..+++|+.
T Consensus 105 l~~L~~L--~L~~N-~l~~l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 105 LTKLTYL--NCDTN-KLTKLD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp CTTCCEE--ECCSS-CCSCCC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCcCCEE--ECCCC-cCCeec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 2223333 33333 444555 77899999999999987763 3 788999999999998 45555 4788999999
Q ss_pred EEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCC
Q 002125 710 LKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNN 789 (963)
Q Consensus 710 L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n 789 (963)
|++++|.. ..+| +. .+++|+.|++++|.+.+. .++.+++|+.|++++|+++.+| ++.+++|+.|++++|
T Consensus 175 L~ls~n~l-~~l~--l~---~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 175 LDCSFNKI-TELD--VS---QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp EECCSSCC-CCCC--CT---TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS
T ss_pred EECCCCcc-ceec--cc---cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCC
Confidence 99999854 4455 33 388999999999987764 3888999999999999999988 889999999999999
Q ss_pred CCcccCccccCCCCCCEEEecc
Q 002125 790 NLKRLPESLNQLSSLEYLQLHL 811 (963)
Q Consensus 790 ~l~~lp~~l~~l~~L~~L~L~~ 811 (963)
.++.+| ++.+++|+.|+++.
T Consensus 244 ~l~~~~--~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 244 PLTELD--VSTLSKLTTLHCIQ 263 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTT
T ss_pred cCCCcC--HHHCCCCCEEeccC
Confidence 999887 45667777666654
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=209.64 Aligned_cols=226 Identities=21% Similarity=0.301 Sum_probs=183.8
Q ss_pred CCccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccC
Q 002125 565 GIKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKC 644 (963)
Q Consensus 565 ~~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~ 644 (963)
....+|..+. +++++|+|++|...+..+..+.++++|++|+|++|.+..
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----------------------------- 102 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT----------------------------- 102 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-----------------------------
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-----------------------------
Confidence 3456676554 679999999977666666889999999999999985321
Q ss_pred cCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCc-cccCCCCCcEEEccCCCCCCCCCc
Q 002125 645 SSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPK-SLNQLALLFRLKLKNCSELDGISS 723 (963)
Q Consensus 645 ~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~ 723 (963)
..|..+.++++|++|+|++|.+....+..+.++++|++|+|++|.++.+|. .+.++++|+.|++++|+.++.++.
T Consensus 103 ----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 103 ----IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp ----ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred ----cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 123457779999999999998776666789999999999999999998876 588999999999999888887776
Q ss_pred ccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCcccC-ccccCC
Q 002125 724 SIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLKRLP-ESLNQL 801 (963)
Q Consensus 724 ~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l 801 (963)
.. +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|.++.+ |..|..+++|+.|+|++|.++.++ ..+.++
T Consensus 179 ~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 179 GA--FEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp TT--TTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred ch--hhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 43 2348999999999998764 55 478899999999999999977 678999999999999999999875 568999
Q ss_pred CCCCEEEeccCC-----------CCCCceecCCcchhhh
Q 002125 802 SSLEYLQLHLRS-----------PRKLTSLNLSVNLRNY 829 (963)
Q Consensus 802 ~~L~~L~L~~~~-----------~~~L~~L~l~~n~~~~ 829 (963)
++|+.|+|++|+ +++|+.|+|++|...|
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 999999998664 4567788888887755
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=230.20 Aligned_cols=272 Identities=19% Similarity=0.216 Sum_probs=197.8
Q ss_pred ccccCCcccccccCCCcccccceeeeEEecCCc----cC-CCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCc
Q 002125 535 SLPISIPFKDLVNFPSVTSCHVYTLELVKVGIK----EL-PSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEIS 609 (963)
Q Consensus 535 ~i~l~~~~~~~~~~~~f~~~~l~~L~~l~~~~~----~l-p~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls 609 (963)
.+.++.+....+....| .++.+|+.|+++.+ .+ |..|.++++|++|+|++|...+..|..+.++++|++|+|+
T Consensus 28 ~LdLs~N~i~~i~~~~~--~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSF--PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp EEEEESCCCCEECSSSC--SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred EEECCCCcCCccChhHC--cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 45555555555666777 88888888888765 33 5678888999999998887777778888899999999999
Q ss_pred CCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCC--CCCcEE
Q 002125 610 NCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNL--KALEML 687 (963)
Q Consensus 610 ~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l--~~L~~L 687 (963)
+|......+. ... ..++..|+.|.+..+....+. .+..++++++|++|++++|.+.+..|..++.+ ++|+.|
T Consensus 106 ~n~l~~~~~~--~~~---~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 106 FCGLSDAVLK--DGY---FRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp TCCCSSCCST--TCC---CSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CCCCCccccc--Ccc---ccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 8865321110 000 122333333333332222211 23467889999999999988888888888777 789999
Q ss_pred EecCcccc-ccCccccCCCC------CcEEEccCCCCCCCCCcccccc--------------------------------
Q 002125 688 IVDGTAIR-EVPKSLNQLAL------LFRLKLKNCSELDGISSSIFSL-------------------------------- 728 (963)
Q Consensus 688 ~L~~n~l~-~lp~~~~~l~~------L~~L~L~~~~~l~~lp~~~~~l-------------------------------- 728 (963)
++++|.+. ..|..+..+.+ |+.|++++|......+..+...
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 99998887 45555665555 9999999986555554433211
Q ss_pred -c--CCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCccc-CccccCCCC
Q 002125 729 -C--MFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLKRL-PESLNQLSS 803 (963)
Q Consensus 729 -~--~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~ 803 (963)
. ..++|+.|++++|.+.+..|..+..+++|+.|+|++|.++.+ |..|..+++|++|+|++|.++.+ |..+..+++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 0 026799999999998888888899999999999999999866 56789999999999999999877 577899999
Q ss_pred CCEEEeccCCC
Q 002125 804 LEYLQLHLRSP 814 (963)
Q Consensus 804 L~~L~L~~~~~ 814 (963)
|+.|+++.|..
T Consensus 340 L~~L~L~~N~i 350 (844)
T 3j0a_A 340 VAYIDLQKNHI 350 (844)
T ss_dssp CCEEECCSCCC
T ss_pred CCEEECCCCCC
Confidence 99999986543
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=8.3e-21 Score=208.24 Aligned_cols=203 Identities=18% Similarity=0.153 Sum_probs=165.2
Q ss_pred cCCCCcEEeecCCCCcccccccc--CCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCc
Q 002125 575 CLSNLKKLYIVDCSKLESISSSI--FKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPS 652 (963)
Q Consensus 575 ~L~~L~~L~L~~~~~~~~lp~~~--~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~ 652 (963)
++++|++|++++|...+.+|..+ ..+++|++|+|++|.+. .+|.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~----------------------------------~~~~ 138 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA----------------------------------TRDA 138 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS----------------------------------SSSS
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc----------------------------------chhH
Confidence 67888899998887777788776 78888999998887532 2344
Q ss_pred cccCC-----CCCCeeecccccccccCCcccCCCCCCcEEEecCccccc---cCccc--cCCCCCcEEEccCCCCCCCCC
Q 002125 653 SLCMF-----KSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIRE---VPKSL--NQLALLFRLKLKNCSELDGIS 722 (963)
Q Consensus 653 ~~~~l-----~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~---lp~~~--~~l~~L~~L~L~~~~~l~~lp 722 (963)
.+..+ ++|++|++++|.+.+..|..++++++|++|++++|.+.. +|..+ ..+++|+.|++++|.. ..++
T Consensus 139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~ 217 (312)
T 1wwl_A 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETPS 217 (312)
T ss_dssp HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC-CCHH
T ss_pred HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC-cchH
Confidence 45444 899999999999988888999999999999999999763 35555 8999999999999954 4333
Q ss_pred ccccc-ccCCCCCcEEEccCCCCCCcCc-cccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccC
Q 002125 723 SSIFS-LCMFKSLTSLEIIDCQNFMILP-DELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQ 800 (963)
Q Consensus 723 ~~~~~-l~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 800 (963)
..... +..+++|+.|++++|.+.+..| ..+..+++|+.|+|++|.++.+|..+. ++|+.|+|++|+|+.+|. +..
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~ 294 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDE 294 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTT
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-Hhh
Confidence 21111 1247899999999999888775 456778999999999999999999887 899999999999999987 889
Q ss_pred CCCCCEEEeccCCCC
Q 002125 801 LSSLEYLQLHLRSPR 815 (963)
Q Consensus 801 l~~L~~L~L~~~~~~ 815 (963)
+++|+.|+|++|.+.
T Consensus 295 l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCEEEEEECTTCTTT
T ss_pred CCCCCEEeccCCCCC
Confidence 999999999887654
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=210.18 Aligned_cols=243 Identities=19% Similarity=0.226 Sum_probs=174.2
Q ss_pred eeeEEecCC---ccCCC-ccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcccc
Q 002125 558 TLELVKVGI---KELPS-SIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIER 633 (963)
Q Consensus 558 ~L~~l~~~~---~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~ 633 (963)
+|+.++++. ..+|. .+..+++|++|++++|...+..|..+.++++|++|+|++|.+. .++...+.++ .+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l---~~ 125 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS----NLSSSWFKPL---SS 125 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS----SCCHHHHTTC---TT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC----cCCHhHhCCC---cc
Confidence 344444443 34444 6788888888888887655555667888888888888887642 2222112221 12
Q ss_pred ccccccccccCcCCCcCCc--cccCCCCCCeeecccccc-cccCCcccCCCCCCcEEEecCcccccc-CccccCCCCCcE
Q 002125 634 LASCKLVLEKCSSLQSLPS--SLCMFKSLTSLEIIDCQN-FMMLPYELGNLKALEMLIVDGTAIREV-PKSLNQLALLFR 709 (963)
Q Consensus 634 l~~L~l~l~~~~~l~~lP~--~~~~l~~L~~L~L~~~~~-~~~~p~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~ 709 (963)
|+. +++.+ +.+..+|. .+..+++|++|++++|.. ....|..++++++|++|++++|.++.+ |..+.++++|+.
T Consensus 126 L~~--L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 126 LTF--LNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CSE--EECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCE--EECCC-CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 222 33333 24556776 577899999999999854 444467889999999999999999865 777899999999
Q ss_pred EEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCcccc---CCCCCccEEEcCCCCCc-----ccCcccCCCCCC
Q 002125 710 LKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDEL---GNLKALETLIIDGTAMR-----EVPESLGQLSSV 781 (963)
Q Consensus 710 L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l---~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L 781 (963)
|++++|. ++.+|..+.. .+++|+.|++++|.+.+..+..+ .....++.++++++.++ .+|..+..+++|
T Consensus 203 L~l~~n~-l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 203 LILHMKQ-HILLLEIFVD--VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp EEEECSC-STTHHHHHHH--HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred ecCCCCc-cccchhhhhh--hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 9999985 4566654432 27899999999998877554433 34567888888888776 578889999999
Q ss_pred CEEECcCCCCcccCccc-cCCCCCCEEEeccCC
Q 002125 782 KNLVLTNNNLKRLPESL-NQLSSLEYLQLHLRS 813 (963)
Q Consensus 782 ~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~~~ 813 (963)
+.|+|++|+++.+|..+ .++++|+.|+|++|.
T Consensus 280 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 99999999999999774 888999988888754
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=210.02 Aligned_cols=191 Identities=19% Similarity=0.200 Sum_probs=130.0
Q ss_pred CccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCc
Q 002125 566 IKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCS 645 (963)
Q Consensus 566 ~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~ 645 (963)
...+|..+. ++|++|++++|...+..+..+.++++|++|+|++|.+..
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------------ 90 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT------------------------------ 90 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE------------------------------
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc------------------------------
Confidence 356676554 579999999976554444589999999999999985421
Q ss_pred CCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCc--cccCCCCCcEEEccCCCCCCCCC-
Q 002125 646 SLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPK--SLNQLALLFRLKLKNCSELDGIS- 722 (963)
Q Consensus 646 ~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~~~~l~~lp- 722 (963)
..|..+.++++|++|++++|.+.+..+..++++++|++|++++|.++.+|. .+.++++|+.|++++|..++.++
T Consensus 91 ---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 91 ---IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp ---ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred ---cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 123346667777777777776655444446777777777777777777765 56677777777777775444443
Q ss_pred cccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCccc-CCCCCCCEEECcCCCCccc
Q 002125 723 SSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESL-GQLSSVKNLVLTNNNLKRL 794 (963)
Q Consensus 723 ~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~Ls~n~l~~l 794 (963)
..+.. +++|++|++++|.+.+..|..+..+++|++|++++|.+..+|..+ ..+++|+.|+|++|.++.+
T Consensus 168 ~~~~~---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 168 KDFAG---LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp TTTTT---CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred HHccC---CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 23333 677777777777776666777777777777777777777666543 3466777777777766654
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.3e-19 Score=195.12 Aligned_cols=209 Identities=19% Similarity=0.247 Sum_probs=173.7
Q ss_pred CccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCc
Q 002125 566 IKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCS 645 (963)
Q Consensus 566 ~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~ 645 (963)
...+|..+. ++|++|++++|...+..+..+.++++|++|+|++|...
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------- 65 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------------------------------- 65 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-------------------------------
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-------------------------------
Confidence 345666553 56999999997655544558899999999999998532
Q ss_pred CCCcCC-ccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCc-cccCCCCCcEEEccCCCCCC-CCC
Q 002125 646 SLQSLP-SSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPK-SLNQLALLFRLKLKNCSELD-GIS 722 (963)
Q Consensus 646 ~l~~lP-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~~l~-~lp 722 (963)
.+| ..+.++++|++|++++|.+.+..|..+.++++|++|++++|.++.++. .+.++++|+.|++++|.... .+|
T Consensus 66 ---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~ 142 (276)
T 2z62_A 66 ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142 (276)
T ss_dssp ---EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred ---ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCc
Confidence 233 357779999999999999888888899999999999999999998766 68999999999999996554 367
Q ss_pred cccccccCCCCCcEEEccCCCCCCcCccccCCCCCcc----EEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCcc-
Q 002125 723 SSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALE----TLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPES- 797 (963)
Q Consensus 723 ~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~----~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~- 797 (963)
..+.. +++|+.|++++|.+.+..+..+..+++|+ .|++++|.++.+|.......+|+.|+|++|.++.+|..
T Consensus 143 ~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 143 EYFSN---LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp GGGGG---CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred hhhcc---CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhH
Confidence 77766 89999999999998887777777777777 89999999999988777777999999999999999865
Q ss_pred ccCCCCCCEEEeccCC
Q 002125 798 LNQLSSLEYLQLHLRS 813 (963)
Q Consensus 798 l~~l~~L~~L~L~~~~ 813 (963)
+..+++|+.|+|++|.
T Consensus 220 ~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 220 FDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTTCCSCCEEECCSSC
T ss_pred hcccccccEEEccCCc
Confidence 5889999999998764
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=6.6e-19 Score=203.21 Aligned_cols=275 Identities=17% Similarity=0.157 Sum_probs=175.4
Q ss_pred CcccccceeeeEEecCCccCCC-ccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCC
Q 002125 550 SVTSCHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGG 628 (963)
Q Consensus 550 ~f~~~~l~~L~~l~~~~~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~ 628 (963)
.+ ..+++|+.|+++.+.+.. .++.+++|++|++++|...+ +| ++++++|++|++++|.... ++ +.
T Consensus 59 ~l--~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~----l~---~~-- 124 (457)
T 3bz5_A 59 GI--EKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK----LD---VS-- 124 (457)
T ss_dssp TG--GGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC----CC---CT--
T ss_pred hh--cccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe----ec---CC--
Confidence 56 777788888887655533 37888899999999866444 54 7889999999999886432 11 11
Q ss_pred CccccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCc
Q 002125 629 IGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLF 708 (963)
Q Consensus 629 ~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~ 708 (963)
.+..|+.|.+..+ .+..+| ++.+++|++|++++|...+.+ .++.+++|++|++++|.++.+| +..+++|+
T Consensus 125 -~l~~L~~L~l~~N---~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~ 194 (457)
T 3bz5_A 125 -QNPLLTYLNCARN---TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLN 194 (457)
T ss_dssp -TCTTCCEEECTTS---CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCC
T ss_pred -CCCcCCEEECCCC---ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCC
Confidence 2222333333222 333443 667888888888888766666 4677888888888888888876 77788888
Q ss_pred EEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcC
Q 002125 709 RLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTN 788 (963)
Q Consensus 709 ~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~ 788 (963)
.|++++|... .++ + ..+++|+.|++++|.+.+ +| ++.+++|+.|++++|.++.+| ++.+++|+.|++++
T Consensus 195 ~L~l~~N~l~-~~~--l---~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 195 RLNCDTNNIT-KLD--L---NQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQ 263 (457)
T ss_dssp EEECCSSCCS-CCC--C---TTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTT
T ss_pred EEECcCCcCC-eec--c---ccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccC
Confidence 8888887543 332 3 337788888888887766 55 777888888888888888776 45566666666665
Q ss_pred CCCcccCc---------cccCCCCCCEEEeccCC--------CCCCceecCCcchh-hhHhhCchhhHHHHhcccccccc
Q 002125 789 NNLKRLPE---------SLNQLSSLEYLQLHLRS--------PRKLTSLNLSVNLR-NYLKLDPNELSEIVKDGWMKQSF 850 (963)
Q Consensus 789 n~l~~lp~---------~l~~l~~L~~L~L~~~~--------~~~L~~L~l~~n~~-~~~~l~~n~l~~~~~~~~~~~~~ 850 (963)
|+++.+.- .++.+++|+.|+++.|. +.+|+.|+++.|.. ..+++++|.++++ .+.....
T Consensus 264 n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~ 340 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTK 340 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTT
T ss_pred CCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCc
Confidence 55543320 13556777777776632 12344444443321 2334556666654 1334444
Q ss_pred ceeeeecCCCCC
Q 002125 851 AKSKYFPGNEIP 862 (963)
Q Consensus 851 ~~~~~~~g~~iP 862 (963)
+..+.+.+|.+-
T Consensus 341 L~~L~l~~N~l~ 352 (457)
T 3bz5_A 341 LKSLSCVNAHIQ 352 (457)
T ss_dssp CSEEECCSSCCC
T ss_pred CcEEECCCCCCC
Confidence 555666666553
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=3.2e-19 Score=193.09 Aligned_cols=201 Identities=17% Similarity=0.198 Sum_probs=165.5
Q ss_pred ccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCC
Q 002125 572 SIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLP 651 (963)
Q Consensus 572 ~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP 651 (963)
.+.++++|+.+++++ +.+..+|..+. ++|++|+|++|.+.. ..|
T Consensus 5 ~~~~l~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N~l~~---------------------------------~~~ 48 (290)
T 1p9a_G 5 EVSKVASHLEVNCDK-RNLTALPPDLP--KDTTILHLSENLLYT---------------------------------FSL 48 (290)
T ss_dssp EEECSTTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTSCCSE---------------------------------EEG
T ss_pred cccccCCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCCcCCc---------------------------------cCH
Confidence 366788899999988 44667887664 689999999885321 124
Q ss_pred ccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCC
Q 002125 652 SSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMF 731 (963)
Q Consensus 652 ~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l 731 (963)
..+..+++|++|++++|.+.+..+ . +.+++|++|++++|.++.+|..+..+++|+.|++++|...+..|..+.. +
T Consensus 49 ~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~---l 123 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG---L 123 (290)
T ss_dssp GGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT---C
T ss_pred HHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcC---C
Confidence 557788999999999988665433 2 7899999999999999999999999999999999998554433344544 8
Q ss_pred CCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcc-cCCCCCCCEEECcCCCCcccCccccCCCCCCEEEec
Q 002125 732 KSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPES-LGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLH 810 (963)
Q Consensus 732 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 810 (963)
++|+.|++++|.+.+..+..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|.++.+|..+..+++|+.|+|+
T Consensus 124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 9999999999998887777789999999999999999999875 588999999999999999999988888888888887
Q ss_pred cCC
Q 002125 811 LRS 813 (963)
Q Consensus 811 ~~~ 813 (963)
+|.
T Consensus 204 ~Np 206 (290)
T 1p9a_G 204 GNP 206 (290)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 65
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.82 E-value=1.6e-21 Score=186.39 Aligned_cols=101 Identities=19% Similarity=0.346 Sum_probs=90.7
Q ss_pred CCCcccEEEcCccccccCchHHH-HHHHHhhC--CCceEEeC-CCCCCccchHHHHHHhhhcceeeeeeccCccchhhhH
Q 002125 23 NSNKYGVFLSFRGEDTRDNFTSH-LYSALCHN--NIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCL 98 (963)
Q Consensus 23 ~~~~~dvfis~~~~d~~~~~~~~-l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~ 98 (963)
..+.|||||||+|+|+ .||.+ |+++|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4578999999999995 79997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCcEEEeEeee-ccCc
Q 002125 99 DELSKILECK-HDYGQIVIPVFCR-VDPS 125 (963)
Q Consensus 99 ~El~~~~~~~-~~~~~~v~pvf~~-v~p~ 125 (963)
.|+..|+++. +.++++|+||||+ +++.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~ 108 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKK 108 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChh
Confidence 9999998643 5567789999985 4443
No 66
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.81 E-value=4.3e-21 Score=185.25 Aligned_cols=100 Identities=15% Similarity=0.242 Sum_probs=90.9
Q ss_pred CCCcccEEEcCccccccCchHHHHHHHHhhC--CCceEEeC-CCCCCccchHHHHHHhh-hcceeeeeeccCccchhhhH
Q 002125 23 NSNKYGVFLSFRGEDTRDNFTSHLYSALCHN--NIETFIDN-DLKRGDEISQSLLDTIE-ASAISIIIFSERYASSGWCL 98 (963)
Q Consensus 23 ~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~-~s~~~v~v~s~~y~~s~~c~ 98 (963)
..++|||||||+++| .+||.+|+++|+++ |+++|+|+ |+.+|+.+.++|.+||+ +|+++|+|+|++|++|.||.
T Consensus 13 ~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 357899999999999 68999999999985 69999999 99999999999999999 79999999999999999999
Q ss_pred HHHHHHHHhh-hcCCcEEEeEeeeccC
Q 002125 99 DELSKILECK-HDYGQIVIPVFCRVDP 124 (963)
Q Consensus 99 ~El~~~~~~~-~~~~~~v~pvf~~v~p 124 (963)
.|+..|+++. +.++++|+||||+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999886 3445689999997643
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=5.5e-20 Score=214.15 Aligned_cols=150 Identities=13% Similarity=0.026 Sum_probs=114.0
Q ss_pred CCCCCeeecccccccccCCcccCCCCCCcEEEecCcccccc-CccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCc
Q 002125 657 FKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREV-PKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLT 735 (963)
Q Consensus 657 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~ 735 (963)
.++|++|++++|.+.+..+. .+++|+.|++++|.++.+ |..++++++|+.|+|++|...+..|..+.. .+++|+
T Consensus 98 ~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--~l~~L~ 172 (487)
T 3oja_A 98 GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--SSDTLE 172 (487)
T ss_dssp CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG--GTTTCC
T ss_pred CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh--hCCccc
Confidence 37888888888887665553 356788888888888865 456788888888888888666656655541 277888
Q ss_pred EEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccCC
Q 002125 736 SLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLRS 813 (963)
Q Consensus 736 ~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~ 813 (963)
.|++++|.+.+. | ....+++|+.|+|++|.++.+|..+..+++|+.|+|++|.|+.+|..+..+++|+.|++++|.
T Consensus 173 ~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 173 HLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred EEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 888888887665 2 234588888888888888888888888888888888888888888878888888888777644
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=3.6e-19 Score=192.63 Aligned_cols=199 Identities=20% Similarity=0.276 Sum_probs=168.0
Q ss_pred eeeEEecCC---ccCC-CccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcccc
Q 002125 558 TLELVKVGI---KELP-SSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIER 633 (963)
Q Consensus 558 ~L~~l~~~~---~~lp-~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~ 633 (963)
+|+.++++. ..+| ..+..+++|++|++++|...+..|..+.++++|++|+|++|..+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l------------------- 93 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL------------------- 93 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC-------------------
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc-------------------
Confidence 444555544 4444 46899999999999998766666889999999999999998522
Q ss_pred ccccccccccCcCCCcC-CccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEE
Q 002125 634 LASCKLVLEKCSSLQSL-PSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLK 711 (963)
Q Consensus 634 l~~L~l~l~~~~~l~~l-P~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~ 711 (963)
..+ |..+..+++|++|++++|.+.+..|..+.++++|++|++++|.++.+|.. +..+++|+.|+
T Consensus 94 --------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 94 --------------RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp --------------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred --------------cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence 123 55677899999999999999888888999999999999999999988765 88999999999
Q ss_pred ccCCCCCCCCCc-ccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCC
Q 002125 712 LKNCSELDGISS-SIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNN 789 (963)
Q Consensus 712 L~~~~~l~~lp~-~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n 789 (963)
+++|.. ..+|. .+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.++.+|. .+..+++|+.|+|++|
T Consensus 160 l~~n~l-~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 160 LHGNRI-SSVPERAFRG---LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCSSCC-CEECTTTTTT---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CCCCcc-cccCHHHhcC---ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 999954 45554 3444 8999999999999999889999999999999999999998885 4899999999999999
Q ss_pred CCcc
Q 002125 790 NLKR 793 (963)
Q Consensus 790 ~l~~ 793 (963)
.+..
T Consensus 236 ~~~c 239 (285)
T 1ozn_A 236 PWVC 239 (285)
T ss_dssp CEEC
T ss_pred CccC
Confidence 8873
No 69
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.81 E-value=6.2e-21 Score=186.95 Aligned_cols=99 Identities=20% Similarity=0.372 Sum_probs=86.4
Q ss_pred CCCCcccEEEcCccccccCchHHH-HHHHHhh--CCCceEEeC-CCCCCccchHHHHHHhhhcceeeeeeccCccchhhh
Q 002125 22 RNSNKYGVFLSFRGEDTRDNFTSH-LYSALCH--NNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWC 97 (963)
Q Consensus 22 ~~~~~~dvfis~~~~d~~~~~~~~-l~~~L~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c 97 (963)
...++|||||||+++| .+||.+ |+++|++ +|+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.||
T Consensus 31 ~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc 108 (178)
T 2j67_A 31 KRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108 (178)
T ss_dssp CCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred CCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence 4568999999999999 489985 9999998 899999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hcCCcEEEeEeeec
Q 002125 98 LDELSKILECK-HDYGQIVIPVFCRV 122 (963)
Q Consensus 98 ~~El~~~~~~~-~~~~~~v~pvf~~v 122 (963)
..|+..|+++. +.++++|+||||+-
T Consensus 109 ~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 109 HYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp GTHHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 99999999755 45567899999864
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.1e-19 Score=209.56 Aligned_cols=158 Identities=27% Similarity=0.305 Sum_probs=96.0
Q ss_pred CCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccc
Q 002125 647 LQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIF 726 (963)
Q Consensus 647 l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~ 726 (963)
+..+| .++++++|++|++++|.+.+ +|..+ .+|++|++++|.++.+| .++++++|+.|++++|.. ..+|..
T Consensus 143 l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~-- 213 (454)
T 1jl5_A 143 LEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL-KKLPDL-- 213 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCCC--
T ss_pred CCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC-CcCCCC--
Confidence 34455 36666666666666665443 44432 35666666666666666 466667777777766643 334432
Q ss_pred cccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCE
Q 002125 727 SLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEY 806 (963)
Q Consensus 727 ~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 806 (963)
.++|+.|++++|.+. .+|. ++.+++|+.|++++|.++.+|.. +++|+.|++++|.++.+|.. +++|+.
T Consensus 214 ----~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~ 281 (454)
T 1jl5_A 214 ----PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTF 281 (454)
T ss_dssp ----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCE
T ss_pred ----cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCE
Confidence 246777777777655 4553 66777777777777777766653 35677777777777766643 366777
Q ss_pred EEeccCCCC-------CCceecCCcc
Q 002125 807 LQLHLRSPR-------KLTSLNLSVN 825 (963)
Q Consensus 807 L~L~~~~~~-------~L~~L~l~~n 825 (963)
|++++|.+. +|+.|+++.|
T Consensus 282 L~ls~N~l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 282 LDVSENIFSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp EECCSSCCSEESCCCTTCCEEECCSS
T ss_pred EECcCCccCcccCcCCcCCEEECcCC
Confidence 777665432 3455555544
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1e-19 Score=200.08 Aligned_cols=216 Identities=14% Similarity=0.086 Sum_probs=141.7
Q ss_pred cCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccc-cccccCcCCCcCCcc
Q 002125 575 CLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCK-LVLEKCSSLQSLPSS 653 (963)
Q Consensus 575 ~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~-l~l~~~~~l~~lP~~ 653 (963)
.+++|++|++++|...+..|..+.++++|++|+|++|.+.... .+..+..|+ +++.++ .+..+|.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------------~~~~l~~L~~L~Ls~n-~l~~l~~- 97 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL------------DLESLSTLRTLDLNNN-YVQELLV- 97 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE------------EETTCTTCCEEECCSS-EEEEEEE-
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch------------hhhhcCCCCEEECcCC-ccccccC-
Confidence 3445666666665444444455666666666666665432210 011111111 222221 2333332
Q ss_pred ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCc-cccCCCCCcEEEccCCCCCCCCCcccccccCCC
Q 002125 654 LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPK-SLNQLALLFRLKLKNCSELDGISSSIFSLCMFK 732 (963)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~ 732 (963)
.++|++|++++|.+.+..+.. +++|++|++++|.++.++. .+..+++|+.|++++|...+..+..+. ..++
T Consensus 98 ---~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~l~ 169 (317)
T 3o53_A 98 ---GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--ASSD 169 (317)
T ss_dssp ---CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG--GGTT
T ss_pred ---CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh--hccC
Confidence 478888888888776654433 5678888888888887644 577888888888888865544444442 1267
Q ss_pred CCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccC
Q 002125 733 SLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLR 812 (963)
Q Consensus 733 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 812 (963)
+|+.|++++|.+.+. |. ...+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|
T Consensus 170 ~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 170 TLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred cCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCC
Confidence 888888888876654 32 3357888888888888888888888888888888888888888888888888888888775
Q ss_pred CC
Q 002125 813 SP 814 (963)
Q Consensus 813 ~~ 814 (963)
..
T Consensus 248 ~~ 249 (317)
T 3o53_A 248 GF 249 (317)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=8.9e-21 Score=208.02 Aligned_cols=162 Identities=19% Similarity=0.196 Sum_probs=96.1
Q ss_pred CCccc--cCCCCCCeeecccccccccCCcccCCC-----CCCcEEEecCccccccC-ccccCCCCCcEEEccCCCCCCC-
Q 002125 650 LPSSL--CMFKSLTSLEIIDCQNFMMLPYELGNL-----KALEMLIVDGTAIREVP-KSLNQLALLFRLKLKNCSELDG- 720 (963)
Q Consensus 650 lP~~~--~~l~~L~~L~L~~~~~~~~~p~~~~~l-----~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~~l~~- 720 (963)
+|..+ ..+++|++|++++|.+.+. |..++++ ++|++|++++|.++.+| ..++++++|+.|++++|...+.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence 44443 5566777777777666555 5555555 66777777777776555 4566677777777776654433
Q ss_pred -CCcccccccCCCCCcEEEccCCCCCC--cCc-cccCCCCCccEEEcCCCCCcccC--cccCCCCCCCEEECcCCCCccc
Q 002125 721 -ISSSIFSLCMFKSLTSLEIIDCQNFM--ILP-DELGNLKALETLIIDGTAMREVP--ESLGQLSSVKNLVLTNNNLKRL 794 (963)
Q Consensus 721 -lp~~~~~l~~l~~L~~L~l~~~~~~~--~~p-~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~l 794 (963)
+|..+. +..+++|++|++++|.+.+ .++ ..+.++++|+.|++++|.++..+ ..+..+++|+.|+|++|.|+.+
T Consensus 190 ~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i 268 (312)
T 1wwl_A 190 GLISALC-PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268 (312)
T ss_dssp HHHHHSC-TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC
T ss_pred HHHHHHH-hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh
Confidence 122220 1236667777777766552 122 22345667777777777766543 3455566777777777777766
Q ss_pred CccccCCCCCCEEEeccCCCC
Q 002125 795 PESLNQLSSLEYLQLHLRSPR 815 (963)
Q Consensus 795 p~~l~~l~~L~~L~L~~~~~~ 815 (963)
|..+. ++|+.|+|++|.+.
T Consensus 269 p~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp CSSCC--SEEEEEECCSSCCC
T ss_pred hhhcc--CCceEEECCCCCCC
Confidence 66554 66666666665443
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.8e-18 Score=183.88 Aligned_cols=196 Identities=26% Similarity=0.322 Sum_probs=146.8
Q ss_pred CCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCC-ccccC
Q 002125 578 NLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLP-SSLCM 656 (963)
Q Consensus 578 ~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP-~~~~~ 656 (963)
+++.++++++ .+..+|..+. ++|++|+|++|.+ ..+| ..+.+
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l----------------------------------~~~~~~~~~~ 59 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKL----------------------------------SSLPSKAFHR 59 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCC----------------------------------SCCCTTSSSS
T ss_pred CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCC----------------------------------CeeCHHHhcC
Confidence 4667777764 3556776554 5788888887642 1233 24667
Q ss_pred CCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcccccccCCCCCc
Q 002125 657 FKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLT 735 (963)
Q Consensus 657 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~ 735 (963)
+++|++|++++|.+....+..+.++++|++|++++|.++.+|.. +..+++|+.|++++|......+..+.. +++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---l~~L~ 136 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS---LTKLT 136 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT---CTTCC
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc---CcCCC
Confidence 88888888888876655555667888888888888888877654 577888888888888554443333444 78889
Q ss_pred EEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCcccCcc-ccCCCCCCEEEeccCC
Q 002125 736 SLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRLPES-LNQLSSLEYLQLHLRS 813 (963)
Q Consensus 736 ~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~~ 813 (963)
+|++++|.+.+..+..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|.
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 99999888777666668889999999999999998876 488899999999999999988854 7778888888887754
No 74
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=179.29 Aligned_cols=101 Identities=23% Similarity=0.363 Sum_probs=90.0
Q ss_pred CcccEEEcCccccc---------cCchHHHHHH-HHh-hCCCceEEeC-CCCCCccchHHHHHHhhhcceeeeeeccCcc
Q 002125 25 NKYGVFLSFRGEDT---------RDNFTSHLYS-ALC-HNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYA 92 (963)
Q Consensus 25 ~~~dvfis~~~~d~---------~~~~~~~l~~-~L~-~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~ 92 (963)
+.|||||||+++|+ ++.||.++.. .|+ ++|+++|+|+ |+.+|+.+.++|.+||++||++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 4678888665 699 7999999999 9999999999999999999999999999997
Q ss_pred -chhhhHHHHHHHHHhh-hcCCcEEEeEeeeccCc
Q 002125 93 -SSGWCLDELSKILECK-HDYGQIVIPVFCRVDPS 125 (963)
Q Consensus 93 -~s~~c~~El~~~~~~~-~~~~~~v~pvf~~v~p~ 125 (963)
.|.||..|+..|+++. ..++++|+||+|+-.+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999987 55678999999876554
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=195.49 Aligned_cols=207 Identities=17% Similarity=0.144 Sum_probs=167.9
Q ss_pred cCCCCcEEeecCCCCcccccccc--CCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCC-
Q 002125 575 CLSNLKKLYIVDCSKLESISSSI--FKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLP- 651 (963)
Q Consensus 575 ~L~~L~~L~L~~~~~~~~lp~~~--~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP- 651 (963)
.+++|++|++++|...+..|..+ .++++|++|+|++|.+.... ..++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~------------------------------~~~~~ 138 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR------------------------------SWLAE 138 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT------------------------------SSHHH
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh------------------------------hhhHH
Confidence 45679999999998888888887 88999999999998643210 0111
Q ss_pred ccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccc---cCc--cccCCCCCcEEEccCCCCCCCCCcccc
Q 002125 652 SSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIRE---VPK--SLNQLALLFRLKLKNCSELDGISSSIF 726 (963)
Q Consensus 652 ~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~---lp~--~~~~l~~L~~L~L~~~~~l~~lp~~~~ 726 (963)
..+..+++|++|++++|.+.+..|..++++++|++|+|++|.+.. ++. .+..+++|++|++++|.. ..++....
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~ 217 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCA 217 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHH
Confidence 124468999999999999988888999999999999999999763 433 347899999999999954 45554311
Q ss_pred c-ccCCCCCcEEEccCCCCCCcCccccCCC---CCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCC
Q 002125 727 S-LCMFKSLTSLEIIDCQNFMILPDELGNL---KALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLS 802 (963)
Q Consensus 727 ~-l~~l~~L~~L~l~~~~~~~~~p~~l~~l---~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 802 (963)
. +..+++|++|++++|.+.+..|..+..+ ++|++|+|++|.++.+|..+. ++|+.|+|++|+++.+|. +..++
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~ 294 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELP 294 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCC
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCC
Confidence 1 1237999999999999998888777776 699999999999999998875 899999999999999985 78889
Q ss_pred CCCEEEeccCCCC
Q 002125 803 SLEYLQLHLRSPR 815 (963)
Q Consensus 803 ~L~~L~L~~~~~~ 815 (963)
+|+.|+|++|.+.
T Consensus 295 ~L~~L~L~~N~l~ 307 (310)
T 4glp_A 295 EVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCEECSSTTTS
T ss_pred CccEEECcCCCCC
Confidence 9999999887654
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.8e-19 Score=209.77 Aligned_cols=231 Identities=10% Similarity=0.144 Sum_probs=178.2
Q ss_pred cceeeeEEecCCcc---C-CCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 555 HVYTLELVKVGIKE---L-PSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 555 ~l~~L~~l~~~~~~---l-p~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
.+.+|+.|+++.+. + |..|..+++|++|+|++|...+..| +..+++|++|+|++|.+... + .
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l----~--------~ 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL----L--------V 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE----E--------E
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC----C--------C
Confidence 33456666665543 3 3578899999999999977655554 88999999999999864321 1 1
Q ss_pred cccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccc-cCcccc-CCCCCc
Q 002125 631 IERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIRE-VPKSLN-QLALLF 708 (963)
Q Consensus 631 l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~-lp~~~~-~l~~L~ 708 (963)
...|..| ++.+| .+..+|.. .+++|++|++++|.+.+..|..++++++|++|+|++|.++. .|..+. .+++|+
T Consensus 98 ~~~L~~L--~L~~N-~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 GPSIETL--HAANN-NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp CTTCCEE--ECCSS-CCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCCcCEE--ECcCC-cCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 1222222 33332 34444442 47899999999999999989999999999999999999996 456665 799999
Q ss_pred EEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcC
Q 002125 709 RLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTN 788 (963)
Q Consensus 709 ~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~ 788 (963)
.|+|++|... .+|... .+++|+.|++++|.+.+. |..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++
T Consensus 173 ~L~Ls~N~l~-~~~~~~----~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 173 HLNLQYNFIY-DVKGQV----VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp EEECTTSCCC-EEECCC----CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred EEecCCCccc-cccccc----cCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC
Confidence 9999999644 444332 389999999999998774 4458999999999999999999999999999999999999
Q ss_pred CCCc--ccCccccCCCCCCEEEec
Q 002125 789 NNLK--RLPESLNQLSSLEYLQLH 810 (963)
Q Consensus 789 n~l~--~lp~~l~~l~~L~~L~L~ 810 (963)
|.+. .+|..+..+++|+.|++.
T Consensus 247 N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 247 NGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcCcchHHHHHhCCCCcEEecc
Confidence 9998 677778777777666653
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.7e-18 Score=189.22 Aligned_cols=193 Identities=23% Similarity=0.285 Sum_probs=139.1
Q ss_pred cccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCc
Q 002125 573 IECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPS 652 (963)
Q Consensus 573 ~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~ 652 (963)
...+++|++|++++|. +..+| .+..+++|++|+|++|.. ..+|.
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~i----------------------------------~~~~~ 80 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQI----------------------------------TDLAP 80 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC----------------------------------CCCGG
T ss_pred HHHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCcC----------------------------------CCChh
Confidence 4456677788887754 44455 577778888888887642 23444
Q ss_pred cccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCC
Q 002125 653 SLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFK 732 (963)
Q Consensus 653 ~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~ 732 (963)
+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++.+|. +..+++|+.|++++|.. ..++. +. .++
T Consensus 81 -~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~---~l~ 151 (308)
T 1h6u_A 81 -LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LA---GLT 151 (308)
T ss_dssp -GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GG---GCT
T ss_pred -HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc-cc---CCC
Confidence 6667788888888877544 33 57778888888888888877765 77888888888888743 34443 33 377
Q ss_pred CCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccC
Q 002125 733 SLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLR 812 (963)
Q Consensus 733 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 812 (963)
+|+.|++++|.+.+..+ +..+++|+.|++++|.++.+|. +..+++|+.|+|++|.++.+| .+..+++|+.|++++|
T Consensus 152 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEE
T ss_pred CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCC
Confidence 88888888887665333 7788888888888888887765 777888888888888888777 3777888888888775
Q ss_pred CC
Q 002125 813 SP 814 (963)
Q Consensus 813 ~~ 814 (963)
.+
T Consensus 228 ~i 229 (308)
T 1h6u_A 228 TI 229 (308)
T ss_dssp EE
T ss_pred ee
Confidence 44
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=1.7e-19 Score=198.20 Aligned_cols=233 Identities=11% Similarity=0.165 Sum_probs=180.0
Q ss_pred ccceeeeEEecCCccC---C-CccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCC
Q 002125 554 CHVYTLELVKVGIKEL---P-SSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGI 629 (963)
Q Consensus 554 ~~l~~L~~l~~~~~~l---p-~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~ 629 (963)
..+.+|+.|+++.+.+ + ..+..+++|++|++++|...+..+ +..+++|++|+|++|.+... .
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----------- 96 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----------- 96 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E-----------
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c-----------
Confidence 3445667777765544 3 468899999999999977655443 88999999999999864321 1
Q ss_pred ccccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccC-ccc-cCCCCC
Q 002125 630 GIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVP-KSL-NQLALL 707 (963)
Q Consensus 630 ~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp-~~~-~~l~~L 707 (963)
....|..|. +.+ +.+..+|.. .+++|++|++++|.+.+..|..++++++|++|++++|.++.++ ..+ ..+++|
T Consensus 97 ~~~~L~~L~--l~~-n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 97 VGPSIETLH--AAN-NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp ECTTCCEEE--CCS-SCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CCCCcCEEE--CCC-CccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 112233332 222 234444432 3789999999999998888889999999999999999999764 444 478999
Q ss_pred cEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECc
Q 002125 708 FRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLT 787 (963)
Q Consensus 708 ~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls 787 (963)
+.|++++|.. ..+|... .+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|+.|+|+
T Consensus 172 ~~L~L~~N~l-~~~~~~~----~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 172 EHLNLQYNFI-YDVKGQV----VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CEEECTTSCC-CEEECCC----CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred CEEECCCCcC-ccccccc----ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEcc
Confidence 9999999954 4444432 28899999999998876 4555899999999999999999999999999999999999
Q ss_pred CCCCc--ccCccccCCCCCCEEEecc
Q 002125 788 NNNLK--RLPESLNQLSSLEYLQLHL 811 (963)
Q Consensus 788 ~n~l~--~lp~~l~~l~~L~~L~L~~ 811 (963)
+|.++ .+|..+..+++|+.|++..
T Consensus 246 ~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp TCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCccCcCHHHHHhccccceEEECCC
Confidence 99998 6788888888888777653
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=4.1e-18 Score=206.23 Aligned_cols=132 Identities=21% Similarity=0.280 Sum_probs=84.2
Q ss_pred CCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCc--ccCcccCCCCCCCEEECcCCCCccc-CccccCCCCCCE
Q 002125 730 MFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMR--EVPESLGQLSSVKNLVLTNNNLKRL-PESLNQLSSLEY 806 (963)
Q Consensus 730 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~ 806 (963)
.+++++.++++.|.+.+..+..+..+++|+.|++++|.+. ..|..+..+++|+.|+|++|+|+.+ |..+.++++|+.
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 3666777777777777767777777778888888877643 3566777788888888888888776 456777888888
Q ss_pred EEeccCCCCCCceecCCc-chhhhHhhCchhhHHHHhcccccc-ccceeeeecCCCC
Q 002125 807 LQLHLRSPRKLTSLNLSV-NLRNYLKLDPNELSEIVKDGWMKQ-SFAKSKYFPGNEI 861 (963)
Q Consensus 807 L~L~~~~~~~L~~L~l~~-n~~~~~~l~~n~l~~~~~~~~~~~-~~~~~~~~~g~~i 861 (963)
|+|++|++..+....+.. ..+..+++++|.++++.+..+... ..+..+.+.||++
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 888776544332222111 111234555666666655555443 3455666666654
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=2.5e-18 Score=180.66 Aligned_cols=203 Identities=19% Similarity=0.221 Sum_probs=161.3
Q ss_pred CccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCc
Q 002125 566 IKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCS 645 (963)
Q Consensus 566 ~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~ 645 (963)
...+|. + .++|++|++++|...+..+..+.++++|++|++++|..
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-------------------------------- 67 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-------------------------------- 67 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS--------------------------------
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC--------------------------------
Confidence 345666 3 23799999999765444445788999999999999852
Q ss_pred CCCcCCc-cccCCCCCCeeeccc-ccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCc---EEEccCCCCCCC
Q 002125 646 SLQSLPS-SLCMFKSLTSLEIID-CQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLF---RLKLKNCSELDG 720 (963)
Q Consensus 646 ~l~~lP~-~~~~l~~L~~L~L~~-~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~---~L~L~~~~~l~~ 720 (963)
++.+|. .+.++++|++|++++ |.+.+..+..+.++++|++|++++|.++.+|. +..+++|+ .|++++|..+..
T Consensus 68 -l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 68 -LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp -CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred -cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhh
Confidence 223443 577899999999998 77666666788999999999999999999987 88888888 999999955566
Q ss_pred CCcc-cccccCCCCCc-EEEccCCCCCCcCccccCCCCCccEEEcCCCC-CcccC-cccCCC-CCCCEEECcCCCCcccC
Q 002125 721 ISSS-IFSLCMFKSLT-SLEIIDCQNFMILPDELGNLKALETLIIDGTA-MREVP-ESLGQL-SSVKNLVLTNNNLKRLP 795 (963)
Q Consensus 721 lp~~-~~~l~~l~~L~-~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~-l~~lp-~~l~~l-~~L~~L~Ls~n~l~~lp 795 (963)
+|.. +.. +++|+ .|++++|.+. .+|......++|+.|++++|. ++.+| ..+..+ ++|+.|+|++|+++.+|
T Consensus 146 i~~~~~~~---l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 146 IPVNAFQG---LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp ECTTTTTT---TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred cCcccccc---hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 6654 433 88999 9999999877 455544344899999999994 99886 458889 99999999999999999
Q ss_pred ccccCCCCCCEEEecc
Q 002125 796 ESLNQLSSLEYLQLHL 811 (963)
Q Consensus 796 ~~l~~l~~L~~L~L~~ 811 (963)
.. .+++|+.|+++.
T Consensus 222 ~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 222 SK--GLEHLKELIARN 235 (239)
T ss_dssp CT--TCTTCSEEECTT
T ss_pred hh--HhccCceeeccC
Confidence 65 678888888876
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=1.7e-17 Score=191.17 Aligned_cols=77 Identities=25% Similarity=0.207 Sum_probs=39.5
Q ss_pred CCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEE
Q 002125 658 KSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSL 737 (963)
Q Consensus 658 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L 737 (963)
++|++|++++|.+. .+| .++++++|++|++++|.++.+|.. +++|+.|++++|. +..+|.. +++|+.|
T Consensus 215 ~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l~~l~~~------~~~L~~L 282 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-LTDLPEL------PQSLTFL 282 (454)
T ss_dssp TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-CSCCCCC------CTTCCEE
T ss_pred CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-ccccCcc------cCcCCEE
Confidence 35555555555443 444 255566666666666665555542 2455555555553 2234432 2455555
Q ss_pred EccCCCCCC
Q 002125 738 EIIDCQNFM 746 (963)
Q Consensus 738 ~l~~~~~~~ 746 (963)
++++|.+.+
T Consensus 283 ~ls~N~l~~ 291 (454)
T 1jl5_A 283 DVSENIFSG 291 (454)
T ss_dssp ECCSSCCSE
T ss_pred ECcCCccCc
Confidence 555555443
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.7e-17 Score=197.06 Aligned_cols=213 Identities=23% Similarity=0.236 Sum_probs=123.5
Q ss_pred ccceeeeEEecCCccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcccc
Q 002125 554 CHVYTLELVKVGIKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIER 633 (963)
Q Consensus 554 ~~l~~L~~l~~~~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~ 633 (963)
.+++.|.+.++....+|. .+++|++|+|++|. +..+|. .+++|++|+|++|.+.. ++. .+.+
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~~----l~~-------~l~~ 122 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSNPLTH----LPA-------LPSG 122 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSCCCCC----CCC-------CCTT
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCCcCCC----CCC-------CCCC
Confidence 444444444444445555 56788888888865 556775 67888888888886432 222 1122
Q ss_pred ccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEcc
Q 002125 634 LASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLK 713 (963)
Q Consensus 634 l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~ 713 (963)
|..|. +.+ +.+..+|.. +++|++|++++|.+.+ +|.. +++|+.|++++|.++.+| ..+++|+.|+++
T Consensus 123 L~~L~--L~~-N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls 189 (622)
T 3g06_A 123 LCKLW--IFG-NQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP---MLPSGLQELSVS 189 (622)
T ss_dssp CCEEE--CCS-SCCSCCCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECC
T ss_pred cCEEE--CCC-CCCCcCCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCEEECCCCCCCCCc---ccCCCCcEEECC
Confidence 22222 222 235556653 4677777777776543 4432 345677777777777666 345667777777
Q ss_pred CCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcc
Q 002125 714 NCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKR 793 (963)
Q Consensus 714 ~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 793 (963)
+|. +..+|.. +++|+.|++++|.+.. +|. .+++|+.|++++|.++.+| ..+++|+.|+|++|+|+.
T Consensus 190 ~N~-l~~l~~~------~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 190 DNQ-LASLPTL------PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp SSC-CSCCCCC------CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC
T ss_pred CCC-CCCCCCc------cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCc
Confidence 663 3344432 3456666666665442 332 2356666666666666665 344566666666666666
Q ss_pred cCccccCCCCCCEEEeccCCC
Q 002125 794 LPESLNQLSSLEYLQLHLRSP 814 (963)
Q Consensus 794 lp~~l~~l~~L~~L~L~~~~~ 814 (963)
+|. .+++|+.|+|++|.+
T Consensus 256 lp~---~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 256 LPM---LPSGLLSLSVYRNQL 273 (622)
T ss_dssp CCC---CCTTCCEEECCSSCC
T ss_pred CCc---ccccCcEEeCCCCCC
Confidence 665 455666666665443
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=9e-18 Score=181.66 Aligned_cols=198 Identities=17% Similarity=0.184 Sum_probs=162.9
Q ss_pred ccceeeeEEecCC---ccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 554 CHVYTLELVKVGI---KELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 554 ~~l~~L~~l~~~~---~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
.++.+|+.+++.. ..+|..+. ++|++|++++|...+..|..+.++++|++|+|++|.+.
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~---------------- 68 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---------------- 68 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC----------------
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC----------------
Confidence 4455566666654 45565553 67999999998876666788999999999999998532
Q ss_pred cccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCc-cccCCCCCcE
Q 002125 631 IERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPK-SLNQLALLFR 709 (963)
Q Consensus 631 l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~ 709 (963)
.+|.. ..+++|++|++++|.+. .+|..+.++++|++|++++|.++.+|. .+..+++|+.
T Consensus 69 ------------------~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 69 ------------------KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp ------------------EEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred ------------------cccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 23332 56899999999998765 788889999999999999999998874 5899999999
Q ss_pred EEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCC
Q 002125 710 LKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNN 789 (963)
Q Consensus 710 L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n 789 (963)
|+|++|... .+|...+ ..+++|+.|++++|.+....+..+..+++|+.|+|++|.++.+|..+..+.+|+.|+|++|
T Consensus 129 L~L~~N~l~-~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 129 LYLKGNELK-TLPPGLL--TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EECTTSCCC-CCCTTTT--TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred EECCCCCCC-ccChhhc--ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 999999554 5555432 2389999999999998876666788999999999999999999999999999999999999
Q ss_pred CCc
Q 002125 790 NLK 792 (963)
Q Consensus 790 ~l~ 792 (963)
.+.
T Consensus 206 p~~ 208 (290)
T 1p9a_G 206 PWL 208 (290)
T ss_dssp CBC
T ss_pred Ccc
Confidence 875
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.2e-17 Score=178.91 Aligned_cols=186 Identities=23% Similarity=0.310 Sum_probs=154.6
Q ss_pred ccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcC
Q 002125 567 KELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSS 646 (963)
Q Consensus 567 ~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~ 646 (963)
..+|..+. ++|++|++++|...+..+..+.++++|++|+|++|.+
T Consensus 29 ~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--------------------------------- 73 (270)
T 2o6q_A 29 TAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--------------------------------- 73 (270)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC---------------------------------
T ss_pred CccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc---------------------------------
Confidence 45565543 5799999999765544446899999999999999853
Q ss_pred CCcCCcc-ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcc
Q 002125 647 LQSLPSS-LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSS 724 (963)
Q Consensus 647 l~~lP~~-~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~ 724 (963)
..+|.. +..+++|++|++++|.+.+..+..+.++++|++|++++|.++.+|.. +..+++|+.|++++|.. ..+|..
T Consensus 74 -~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~ 151 (270)
T 2o6q_A 74 -QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKG 151 (270)
T ss_dssp -SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT
T ss_pred -CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHh
Confidence 234443 46799999999999998877777889999999999999999988754 78999999999999954 455554
Q ss_pred -cccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcc-cCCCCCCCEEECcCCCCc
Q 002125 725 -IFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPES-LGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 725 -~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~ 792 (963)
+.. +++|+.|++++|.+.+..+..+.++++|+.|+|++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 152 ~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 152 VFDK---LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTT---CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HccC---CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 444 89999999999998887777899999999999999999988864 889999999999999875
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.1e-17 Score=198.69 Aligned_cols=252 Identities=23% Similarity=0.287 Sum_probs=181.1
Q ss_pred eeEEec---CCccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcccccc
Q 002125 559 LELVKV---GIKELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLA 635 (963)
Q Consensus 559 L~~l~~---~~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~ 635 (963)
++.+++ ....+|..+. ++|++|++++|. +..+|. .+++|++|+|++|.+. .+|. .+.+|.
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~l~----~lp~-------~l~~L~ 104 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQLT----SLPV-------LPPGLL 104 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCCCS----CCCC-------CCTTCC
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCcCC----cCCC-------CCCCCC
Confidence 444444 3456777665 789999999965 567886 5799999999999742 2332 223344
Q ss_pred ccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCC
Q 002125 636 SCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNC 715 (963)
Q Consensus 636 ~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~ 715 (963)
.|.+. + +.+..+|. .+++|++|++++|.+.+ +|.. +++|++|++++|.++.+|. .+++|+.|++++|
T Consensus 105 ~L~Ls--~-N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N 171 (622)
T 3g06_A 105 ELSIF--S-NPLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNN 171 (622)
T ss_dssp EEEEC--S-CCCCCCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred EEECc--C-CcCCCCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCC
Confidence 44433 2 34566776 47899999999987554 6654 4889999999999998886 3578999999998
Q ss_pred CCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccC
Q 002125 716 SELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLP 795 (963)
Q Consensus 716 ~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 795 (963)
. +..+|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|.. +++|+.|+|++|+|+.+|
T Consensus 172 ~-l~~l~~------~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 172 Q-LTSLPM------LPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP 237 (622)
T ss_dssp C-CSCCCC------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC
T ss_pred C-CCCCcc------cCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC
Confidence 4 555772 26899999999998765 554 357999999999999999864 488999999999999999
Q ss_pred ccccCCCCCCEEEeccCCCCCCceecCCcchhhhHhhCchhhHHHHhccccccccceeeeecCCCC
Q 002125 796 ESLNQLSSLEYLQLHLRSPRKLTSLNLSVNLRNYLKLDPNELSEIVKDGWMKQSFAKSKYFPGNEI 861 (963)
Q Consensus 796 ~~l~~l~~L~~L~L~~~~~~~L~~L~l~~n~~~~~~l~~n~l~~~~~~~~~~~~~~~~~~~~g~~i 861 (963)
..+++|+.|+|++|.+..+.. ...+ +..+++++|.++.+ |..+.....+..+.+.+|.+
T Consensus 238 ---~~l~~L~~L~Ls~N~L~~lp~--~~~~-L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLTSLPM--LPSG-LLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSCCCC--CCTT-CCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCC
T ss_pred ---CCCCcCcEEECCCCCCCcCCc--cccc-CcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCC
Confidence 566899999999876654322 1111 12345556666643 44455556667778888876
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=1.1e-17 Score=179.85 Aligned_cols=200 Identities=20% Similarity=0.265 Sum_probs=160.9
Q ss_pred eeEEecCC---ccCCC-ccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccc
Q 002125 559 LELVKVGI---KELPS-SIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERL 634 (963)
Q Consensus 559 L~~l~~~~---~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l 634 (963)
|+.++++. ..++. .+..+++|++|++++|...+..+..+.++++|++|+|++|....
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------- 90 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS------------------- 90 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-------------------
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-------------------
Confidence 45555544 34444 78899999999999976655555688999999999999986321
Q ss_pred cccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccc--cCccccCCCCCcEEEc
Q 002125 635 ASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIRE--VPKSLNQLALLFRLKL 712 (963)
Q Consensus 635 ~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~L 712 (963)
..|..+.++++|++|++++|.+.+..+..++++++|++|++++|.++. +|..+.++++|+.|++
T Consensus 91 --------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 91 --------------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp --------------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred --------------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 123457789999999999999888777789999999999999999986 7889999999999999
Q ss_pred cCCCCCCCCCcccccccCCCCCc-EEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcc-cCCCCCCCEEECcCCC
Q 002125 713 KNCSELDGISSSIFSLCMFKSLT-SLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPES-LGQLSSVKNLVLTNNN 790 (963)
Q Consensus 713 ~~~~~l~~lp~~~~~l~~l~~L~-~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~ 790 (963)
++|...+..+..+..+..++.|. .|++++|.+.+..+..+ ...+|+.|++++|.++.+|.. +..+++|+.|+|++|.
T Consensus 157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 99966554455666644455555 89999999876555444 445899999999999998875 6899999999999998
Q ss_pred Cc
Q 002125 791 LK 792 (963)
Q Consensus 791 l~ 792 (963)
++
T Consensus 236 ~~ 237 (276)
T 2z62_A 236 WD 237 (276)
T ss_dssp BC
T ss_pred cc
Confidence 76
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=9.7e-18 Score=179.86 Aligned_cols=154 Identities=23% Similarity=0.321 Sum_probs=79.0
Q ss_pred ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcccccccCCC
Q 002125 654 LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSSIFSLCMFK 732 (963)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~ 732 (963)
+..+++|++|++++|.+.+..|..++++++|++|++++|.++.+|.. +..+++|+.|
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L---------------------- 138 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL---------------------- 138 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE----------------------
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE----------------------
Confidence 34455555555555555444444455555555555555555544433 3444444444
Q ss_pred CCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcc-cCCCCCCCEEECcCCCCcccCcc-ccCCCCCCEEEec
Q 002125 733 SLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPES-LGQLSSVKNLVLTNNNLKRLPES-LNQLSSLEYLQLH 810 (963)
Q Consensus 733 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 810 (963)
++++|.+.+..+..++.+++|+.|++++|.++.+|.. ++.+++|+.|+|++|+++.+|.. +..+++|+.|+|+
T Consensus 139 -----~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 139 -----NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp -----ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred -----ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 4444444443344445555555555555555544433 45555566666666655555432 4555566666655
Q ss_pred cCC----CCCCceecCCcchhhhHhhCchhhHHHHhcc
Q 002125 811 LRS----PRKLTSLNLSVNLRNYLKLDPNELSEIVKDG 844 (963)
Q Consensus 811 ~~~----~~~L~~L~l~~n~~~~~~l~~n~l~~~~~~~ 844 (963)
+|. |++|+. ++++.|.++|..|..
T Consensus 214 ~N~~~~~~~~l~~----------l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 214 DNPWDCTCPGIRY----------LSEWINKHSGVVRNS 241 (272)
T ss_dssp SSCBCCCTTTTHH----------HHHHHHHTGGGBBCT
T ss_pred CCCccccCcHHHH----------HHHHHHhCCCcccCc
Confidence 442 333333 344556777665543
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=8.5e-18 Score=180.32 Aligned_cols=205 Identities=16% Similarity=0.189 Sum_probs=156.3
Q ss_pred ccceeeeEEecCCccCC--CccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCcc
Q 002125 554 CHVYTLELVKVGIKELP--SSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGI 631 (963)
Q Consensus 554 ~~l~~L~~l~~~~~~lp--~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l 631 (963)
..+.+|+.+.+....+. ..+..+++|++|++++|... .++ .+.++++|++|+|++|..
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~l------------------ 97 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-DIS-ALKELTNLTYLILTGNQL------------------ 97 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCC-CCG-GGTTCTTCCEEECTTSCC------------------
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCC-Cch-hhcCCCCCCEEECCCCcc------------------
Confidence 45566666666654442 35788888999999886644 343 678889999999988753
Q ss_pred ccccccccccccCcCCCcCC-ccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcE
Q 002125 632 ERLASCKLVLEKCSSLQSLP-SSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFR 709 (963)
Q Consensus 632 ~~l~~L~l~l~~~~~l~~lP-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~ 709 (963)
..+| ..+..+++|++|++++|.+.+..|..++++++|++|++++|.++.+|.. +..+++|+.
T Consensus 98 ----------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 98 ----------------QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp ----------------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ----------------CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence 2333 3367799999999999998887777899999999999999999988765 688999999
Q ss_pred EEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCC
Q 002125 710 LKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNN 789 (963)
Q Consensus 710 L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n 789 (963)
|++++|...+..+..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+. +.+++|+.|+++.|
T Consensus 162 L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 162 LDLSYNQLQSLPEGVFDK---LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWIN 232 (272)
T ss_dssp EECCSSCCCCCCTTTTTT---CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHH
T ss_pred EECCCCCcCccCHHHhcC---CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHH
Confidence 999998654333333333 788999999988888877777888888888888888764 34567888888888
Q ss_pred CCc-ccCccccCCCC
Q 002125 790 NLK-RLPESLNQLSS 803 (963)
Q Consensus 790 ~l~-~lp~~l~~l~~ 803 (963)
.++ .+|.+++.++.
T Consensus 233 ~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 233 KHSGVVRNSAGSVAP 247 (272)
T ss_dssp HTGGGBBCTTSCBCG
T ss_pred hCCCcccCcccccCC
Confidence 776 57777665543
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.8e-17 Score=181.06 Aligned_cols=196 Identities=19% Similarity=0.285 Sum_probs=161.4
Q ss_pred ccceeeeEEecCCc---cCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCc
Q 002125 554 CHVYTLELVKVGIK---ELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 554 ~~l~~L~~l~~~~~---~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~ 630 (963)
..+.+|+.+++... .+| .+..+++|++|++++|. +..++. +.++++|++|+|++|..
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l----------------- 97 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL----------------- 97 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC-----------------
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcC-----------------
Confidence 45566666666554 445 68899999999999965 555665 89999999999999853
Q ss_pred cccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEE
Q 002125 631 IERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRL 710 (963)
Q Consensus 631 l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L 710 (963)
..+| .+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++.++. +..+++|+.|
T Consensus 98 -----------------~~~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 156 (308)
T 1h6u_A 98 -----------------KNVS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYL 156 (308)
T ss_dssp -----------------SCCG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred -----------------CCch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEE
Confidence 1233 36779999999999998765 44 38999999999999999998876 8899999999
Q ss_pred EccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCC
Q 002125 711 KLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNN 790 (963)
Q Consensus 711 ~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~ 790 (963)
++++|.. ..++. +. .+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|+|++|.
T Consensus 157 ~l~~n~l-~~~~~-l~---~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 157 SIGNAQV-SDLTP-LA---NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp ECCSSCC-CCCGG-GT---TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred EccCCcC-CCChh-hc---CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 9999954 45554 43 48999999999998876544 8899999999999999999884 8999999999999999
Q ss_pred CcccCccc
Q 002125 791 LKRLPESL 798 (963)
Q Consensus 791 l~~lp~~l 798 (963)
++..|..+
T Consensus 229 i~~~~~~~ 236 (308)
T 1h6u_A 229 ITNQPVFY 236 (308)
T ss_dssp EECCCEEC
T ss_pred eecCCeee
Confidence 99888543
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=5.5e-17 Score=196.35 Aligned_cols=172 Identities=20% Similarity=0.186 Sum_probs=123.3
Q ss_pred CCCCCCeeecccccccc--cCCcccCCCCCCcEEEecCccccccCcc-------------------------ccCCCCCc
Q 002125 656 MFKSLTSLEIIDCQNFM--MLPYELGNLKALEMLIVDGTAIREVPKS-------------------------LNQLALLF 708 (963)
Q Consensus 656 ~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~L~~n~l~~lp~~-------------------------~~~l~~L~ 708 (963)
.+++|+.|++++|.+.. ..+..+..+.+|++|++..+.+..++.. +..+++|+
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 46788888888876532 2333333444444444444443333333 45566666
Q ss_pred EEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCC-CcCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEEC
Q 002125 709 RLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNF-MILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVL 786 (963)
Q Consensus 709 ~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L 786 (963)
.++++.|......+..+.. +++|+.|++++|... +..|..+..+++|+.|+|++|+++.+ |..|+++++|+.|+|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~---~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNG---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp EEECTTSCCEECCTTTTTT---CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccc---chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 6666666544444444333 789999999999754 45778899999999999999999977 567999999999999
Q ss_pred cCCCCcccC-ccccCCCCCCEEEeccCCC------------CCCceecCCcchhhhH
Q 002125 787 TNNNLKRLP-ESLNQLSSLEYLQLHLRSP------------RKLTSLNLSVNLRNYL 830 (963)
Q Consensus 787 s~n~l~~lp-~~l~~l~~L~~L~L~~~~~------------~~L~~L~l~~n~~~~~ 830 (963)
++|+|+.+| ..+.++++|+.|+|++|++ ++|+.|+|++|...|-
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999986 5589999999999987754 4577777888877553
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=7.6e-17 Score=170.68 Aligned_cols=163 Identities=18% Similarity=0.247 Sum_probs=140.3
Q ss_pred CCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCccc
Q 002125 647 LQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSSI 725 (963)
Q Consensus 647 l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~ 725 (963)
+..+|..+. ++|+.|++++|.+.+..|..++++++|++|+|++|.++.++.. +.++++|+.|+|++|...+..+..+
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 103 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF 103 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh
Confidence 446777664 6899999999999988888999999999999999999977654 8999999999999996554333444
Q ss_pred ccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCcccCc-cccCCCC
Q 002125 726 FSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRLPE-SLNQLSS 803 (963)
Q Consensus 726 ~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~ 803 (963)
.. +++|++|++++|.+.+..+..+..+++|+.|+|++|.++.+|. .++.+++|+.|+|++|.++.+|. .+..+++
T Consensus 104 ~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 104 DH---LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp TT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred cc---cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 44 8999999999999887777778999999999999999999887 69999999999999999999875 5788999
Q ss_pred CCEEEeccCCC
Q 002125 804 LEYLQLHLRSP 814 (963)
Q Consensus 804 L~~L~L~~~~~ 814 (963)
|+.|+|++|..
T Consensus 181 L~~L~l~~N~~ 191 (251)
T 3m19_A 181 LQTITLFGNQF 191 (251)
T ss_dssp CCEEECCSCCB
T ss_pred CCEEEeeCCce
Confidence 99998887653
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=8.5e-17 Score=188.72 Aligned_cols=176 Identities=22% Similarity=0.260 Sum_probs=132.9
Q ss_pred CCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccCC
Q 002125 578 NLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMF 657 (963)
Q Consensus 578 ~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l 657 (963)
+|++|++++|+. ..+|..+. ++|++|+|++|.+ ..+| ..+
T Consensus 60 ~L~~L~Ls~n~L-~~lp~~l~--~~L~~L~Ls~N~l----------------------------------~~ip---~~l 99 (571)
T 3cvr_A 60 QFSELQLNRLNL-SSLPDNLP--PQITVLEITQNAL----------------------------------ISLP---ELP 99 (571)
T ss_dssp TCSEEECCSSCC-SCCCSCCC--TTCSEEECCSSCC----------------------------------SCCC---CCC
T ss_pred CccEEEeCCCCC-CccCHhHc--CCCCEEECcCCCC----------------------------------cccc---ccc
Confidence 688888888654 44777663 7888888888742 2455 236
Q ss_pred CCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEE
Q 002125 658 KSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSL 737 (963)
Q Consensus 658 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L 737 (963)
++|++|++++|.+.+ +|. +.+ +|++|+|++|.++.+|. .+++|+.|++++|.. ..+|. . +++|+.|
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~---l~~L~~L 165 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQL-TMLPE---L---PTSLEVL 165 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCCC---C---CTTCCEE
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCcc-CcCCC---c---CCCcCEE
Confidence 788888888887666 676 555 78888888888888887 678888888888854 44665 2 6788888
Q ss_pred EccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCC-------CEEECcCCCCcccCccccCCCCCCEEEec
Q 002125 738 EIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSV-------KNLVLTNNNLKRLPESLNQLSSLEYLQLH 810 (963)
Q Consensus 738 ~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L-------~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 810 (963)
++++|.+.+ +|. +. ++|+.|+|++|.|+.+|. +.. +| +.|+|++|.|+.||..+..+++|+.|+|+
T Consensus 166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 166 SVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp ECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred ECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 888888766 666 55 888888888888888887 554 67 88888888888888888778888888888
Q ss_pred cCCC
Q 002125 811 LRSP 814 (963)
Q Consensus 811 ~~~~ 814 (963)
+|.+
T Consensus 239 ~N~l 242 (571)
T 3cvr_A 239 DNPL 242 (571)
T ss_dssp SSSC
T ss_pred CCcC
Confidence 7554
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=180.87 Aligned_cols=199 Identities=18% Similarity=0.133 Sum_probs=158.1
Q ss_pred eeeeEEecCCc----cCCCcc--ccCCCCcEEeecCCCCccccc----cccCCCCCccEEeCcCCccccccCCCCccccC
Q 002125 557 YTLELVKVGIK----ELPSSI--ECLSNLKKLYIVDCSKLESIS----SSIFKLKSLQSIEISNCSILKRFLEIPSCNID 626 (963)
Q Consensus 557 ~~L~~l~~~~~----~lp~~~--~~L~~L~~L~L~~~~~~~~lp----~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~ 626 (963)
.+|+.++++.+ ..|..+ ..+++|++|++++|...+..+ ..+..+++|++|+|++|.+..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----------- 159 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA----------- 159 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC-----------
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch-----------
Confidence 33555555443 345566 889999999999988766544 345679999999999986421
Q ss_pred CCCccccccccccccccCcCCCcCCccccCCCCCCeeeccccccccc--C--CcccCCCCCCcEEEecCccccccCcc--
Q 002125 627 GGIGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMM--L--PYELGNLKALEMLIVDGTAIREVPKS-- 700 (963)
Q Consensus 627 ~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~--~--p~~~~~l~~L~~L~L~~n~l~~lp~~-- 700 (963)
..|..+..+++|++|+|++|.+.+. + +..++++++|++|++++|.++.+|..
T Consensus 160 ----------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 160 ----------------------FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp ----------------------CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred ----------------------hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence 2345677899999999999987653 2 23457899999999999999876653
Q ss_pred --ccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCC
Q 002125 701 --LNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQL 778 (963)
Q Consensus 701 --~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l 778 (963)
+.++++|+.|+|++|...+..|..+..+..+++|++|++++|.+. .+|..+. ++|+.|+|++|+++.+|. +..+
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l 293 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDEL 293 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSC
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhC
Confidence 578899999999999777666877776444579999999999987 5677664 899999999999999876 7889
Q ss_pred CCCCEEECcCCCCc
Q 002125 779 SSVKNLVLTNNNLK 792 (963)
Q Consensus 779 ~~L~~L~Ls~n~l~ 792 (963)
++|+.|+|++|.++
T Consensus 294 ~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 294 PEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCSCEECSSTTTS
T ss_pred CCccEEECcCCCCC
Confidence 99999999999886
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1.9e-16 Score=167.65 Aligned_cols=177 Identities=18% Similarity=0.219 Sum_probs=139.3
Q ss_pred CCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccCC
Q 002125 578 NLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMF 657 (963)
Q Consensus 578 ~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l 657 (963)
..+++++++ +.+..+|..+. ++|++|+|++|.+.. ..|..+.++
T Consensus 15 ~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~---------------------------------~~~~~~~~l 58 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLAT---------------------------------LSDATFRGL 58 (251)
T ss_dssp GGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCC---------------------------------CCTTTTTTC
T ss_pred CCeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCc---------------------------------cCHhHhcCc
Confidence 466778876 44667776665 578888888875321 123346778
Q ss_pred CCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCc-cccCCCCCcEEEccCCCCCCCCCcc-cccccCCCCCc
Q 002125 658 KSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPK-SLNQLALLFRLKLKNCSELDGISSS-IFSLCMFKSLT 735 (963)
Q Consensus 658 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~l~~L~ 735 (963)
++|++|+|++|.+.+..|..+.++++|++|++++|.++.+|. .+..+++|+.|+|++|.. ..+|.. +.. +++|+
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~---l~~L~ 134 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDR---LTKLK 134 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTT---CTTCC
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC-CCcChhHhcc---CCccc
Confidence 888999999888888777778888999999999999887765 467889999999998844 455544 333 88999
Q ss_pred EEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCccc
Q 002125 736 SLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRL 794 (963)
Q Consensus 736 ~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l 794 (963)
.|++++|.+.+..+..++.+++|+.|+|++|.++.+|. .+..+++|+.|+|++|.++.-
T Consensus 135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999998887777789999999999999999998875 688999999999999988744
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=1.9e-18 Score=195.60 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=106.1
Q ss_pred CCccccCCCCCCeeecccccccccCC----cccCCC---------CCCcEEEecCcccc--ccC---ccccCCCCCcEEE
Q 002125 650 LPSSLCMFKSLTSLEIIDCQNFMMLP----YELGNL---------KALEMLIVDGTAIR--EVP---KSLNQLALLFRLK 711 (963)
Q Consensus 650 lP~~~~~l~~L~~L~L~~~~~~~~~p----~~~~~l---------~~L~~L~L~~n~l~--~lp---~~~~~l~~L~~L~ 711 (963)
+|..+..+++|++|+|++|.+....+ ..+..+ ++|++|++++|.++ .+| ..+..+++|+.|+
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence 55556667777777777777643322 233333 67777777777775 344 3566777777777
Q ss_pred ccCCCCCC-----CCCcccccccCCCCCcEEEccCCCCC----CcCccccCCCCCccEEEcCCCCCcc-----cCccc--
Q 002125 712 LKNCSELD-----GISSSIFSLCMFKSLTSLEIIDCQNF----MILPDELGNLKALETLIIDGTAMRE-----VPESL-- 775 (963)
Q Consensus 712 L~~~~~l~-----~lp~~~~~l~~l~~L~~L~l~~~~~~----~~~p~~l~~l~~L~~L~L~~n~l~~-----lp~~l-- 775 (963)
+++|.... ..|..+.. +++|+.|++++|.+. ..+|..+..+++|+.|+|++|.++. +|..+
T Consensus 194 L~~n~l~~~g~~~l~~~~l~~---~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 194 MVQNGIRPEGIEHLLLEGLAY---CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp CCSSCCCHHHHHHHHHTTGGG---CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred CcCCCCCHhHHHHHHHHHhhc---CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 77774331 12223333 677777777777764 5566677777777888887777763 45655
Q ss_pred CCCCCCCEEECcCCCCcc-----cCccc-cCCCCCCEEEeccCCCC
Q 002125 776 GQLSSVKNLVLTNNNLKR-----LPESL-NQLSSLEYLQLHLRSPR 815 (963)
Q Consensus 776 ~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L~~~~~~ 815 (963)
+.+++|+.|+|++|.++. +|..+ .++++|+.|+|++|.+.
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 347777788887777776 77666 55777777777765443
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1e-16 Score=168.40 Aligned_cols=194 Identities=22% Similarity=0.324 Sum_probs=159.2
Q ss_pred ccceeeeEEecCCccCCC-ccccCCCCcEEeecCCCCcccccc-ccCCCCCccEEeCcC-CccccccCCCCccccCCCCc
Q 002125 554 CHVYTLELVKVGIKELPS-SIECLSNLKKLYIVDCSKLESISS-SIFKLKSLQSIEISN-CSILKRFLEIPSCNIDGGIG 630 (963)
Q Consensus 554 ~~l~~L~~l~~~~~~lp~-~~~~L~~L~~L~L~~~~~~~~lp~-~~~~L~~L~~L~Ls~-n~~l~~~~~l~~~~l~~~~~ 630 (963)
..++.|.+-......+|. .+..+++|++|++++|..++.++. .+.++++|++|+|++ |..
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l----------------- 93 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL----------------- 93 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-----------------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-----------------
Confidence 355556655555666665 788999999999999765666664 788999999999998 542
Q ss_pred cccccccccccccCcCCCcCC-ccccCCCCCCeeecccccccccCCcccCCCCCCc---EEEecCc-cccccCcc-ccCC
Q 002125 631 IERLASCKLVLEKCSSLQSLP-SSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALE---MLIVDGT-AIREVPKS-LNQL 704 (963)
Q Consensus 631 l~~l~~L~l~l~~~~~l~~lP-~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~---~L~L~~n-~l~~lp~~-~~~l 704 (963)
+.+| ..+.++++|++|++++|.+.+ +|. ++++++|+ +|++++| .++.+|.. +..+
T Consensus 94 -----------------~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 94 -----------------TYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp -----------------CEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred -----------------eEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccch
Confidence 2344 357789999999999998766 776 88888888 9999999 99988875 8899
Q ss_pred CCCc-EEEccCCCCCCCCCcccccccCCCCCcEEEccCCC-CCCcCccccCCC-CCccEEEcCCCCCcccCcccCCCCCC
Q 002125 705 ALLF-RLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQ-NFMILPDELGNL-KALETLIIDGTAMREVPESLGQLSSV 781 (963)
Q Consensus 705 ~~L~-~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~l~~l-~~L~~L~L~~n~l~~lp~~l~~l~~L 781 (963)
++|+ .|++++|.. ..+|...+. .++|+.|++++|. +.+..+..+.++ ++|+.|++++|+++.+|.. .+++|
T Consensus 155 ~~L~~~L~l~~n~l-~~i~~~~~~---~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L 228 (239)
T 2xwt_C 155 CNETLTLKLYNNGF-TSVQGYAFN---GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHL 228 (239)
T ss_dssp BSSEEEEECCSCCC-CEECTTTTT---TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTC
T ss_pred hcceeEEEcCCCCC-cccCHhhcC---CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccC
Confidence 9999 999999854 477776654 4789999999995 666556778999 9999999999999999876 78999
Q ss_pred CEEECcCC
Q 002125 782 KNLVLTNN 789 (963)
Q Consensus 782 ~~L~Ls~n 789 (963)
+.|+++++
T Consensus 229 ~~L~l~~~ 236 (239)
T 2xwt_C 229 KELIARNT 236 (239)
T ss_dssp SEEECTTC
T ss_pred ceeeccCc
Confidence 99999987
No 97
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=2.6e-18 Score=199.55 Aligned_cols=296 Identities=17% Similarity=0.156 Sum_probs=158.0
Q ss_pred eeeEEecCCccCCC-----ccccCCCCcEEeecCCCCcc----ccccccCCCCCccEEeCcCCccccc----c-CCCCcc
Q 002125 558 TLELVKVGIKELPS-----SIECLSNLKKLYIVDCSKLE----SISSSIFKLKSLQSIEISNCSILKR----F-LEIPSC 623 (963)
Q Consensus 558 ~L~~l~~~~~~lp~-----~~~~L~~L~~L~L~~~~~~~----~lp~~~~~L~~L~~L~Ls~n~~l~~----~-~~l~~~ 623 (963)
.|+.|+++...+.. .+..+++|++|++++|.... .++..+..+++|++|+|++|..... + ..++.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~- 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT- 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS-
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh-
Confidence 44455554444432 25566777777777765432 3455666677777777777654321 0 00000
Q ss_pred ccCCCCccccccccccccccCcCC----CcCCccccCCCCCCeeecccccccccCCcc-----cCCCCCCcEEEecCccc
Q 002125 624 NIDGGIGIERLASCKLVLEKCSSL----QSLPSSLCMFKSLTSLEIIDCQNFMMLPYE-----LGNLKALEMLIVDGTAI 694 (963)
Q Consensus 624 ~l~~~~~l~~l~~L~l~l~~~~~l----~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~-----~~~l~~L~~L~L~~n~l 694 (963)
. ...|+. +++.+|.-- ..+|..+..+++|++|++++|.+....+.. ....++|++|++++|.+
T Consensus 83 ----~--~~~L~~--L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 83 ----P--SCKIQK--LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp ----T--TCCCCE--EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred ----C--CCceeE--EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 0 001111 222222211 134556666777777777777654332222 22345677777777766
Q ss_pred cc-----cCccccCCCCCcEEEccCCCCCCCCCccccc-c-cCCCCCcEEEccCCCCCCc----CccccCCCCCccEEEc
Q 002125 695 RE-----VPKSLNQLALLFRLKLKNCSELDGISSSIFS-L-CMFKSLTSLEIIDCQNFMI----LPDELGNLKALETLII 763 (963)
Q Consensus 695 ~~-----lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~-l-~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~L 763 (963)
+. ++..+..+++|+.|++++|......+..+.. + ...++|+.|++++|.+... ++..+..+++|++|++
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 63 3445566677777777776432211111110 0 0144677777777765543 4555566677777777
Q ss_pred CCCCCccc------CcccCCCCCCCEEECcCCCCcc-----cCccccCCCCCCEEEeccCCC----------------CC
Q 002125 764 DGTAMREV------PESLGQLSSVKNLVLTNNNLKR-----LPESLNQLSSLEYLQLHLRSP----------------RK 816 (963)
Q Consensus 764 ~~n~l~~l------p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~~~~----------------~~ 816 (963)
++|.++.. +..+..+++|+.|+|++|.++. +|..+..+++|+.|+|++|.. ++
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 77766532 2223356677777777777664 566666677777777766543 36
Q ss_pred CceecCCcchhh------------------hHhhCchhhHHHHhcccc-----ccccceeeeecCCCCC
Q 002125 817 LTSLNLSVNLRN------------------YLKLDPNELSEIVKDGWM-----KQSFAKSKYFPGNEIP 862 (963)
Q Consensus 817 L~~L~l~~n~~~------------------~~~l~~n~l~~~~~~~~~-----~~~~~~~~~~~g~~iP 862 (963)
|+.|+++.|... .+++++|.++......+. ....+..+.+.+|.+.
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 666666665331 113455655544222111 1345666777777654
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=3.7e-18 Score=193.26 Aligned_cols=224 Identities=15% Similarity=0.149 Sum_probs=169.0
Q ss_pred ccCCCccccCCCCcEEeecCCCCccc----cccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccc
Q 002125 567 KELPSSIECLSNLKKLYIVDCSKLES----ISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLE 642 (963)
Q Consensus 567 ~~lp~~~~~L~~L~~L~L~~~~~~~~----lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~ 642 (963)
..++..+..+++|++|+|++|..... ++..+.++++|++|+|++|.... +.+..
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~---------l~~~~------------- 79 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR---------VKDEI------------- 79 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS---------CGGGS-------------
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc---------cccch-------------
Confidence 45677888899999999999865554 44557889999999999974311 00000
Q ss_pred cCcCCCcCCccccCCCCCCeeecccccccc----cCCcccCCCCCCcEEEecCccccc-----cCccccCC---------
Q 002125 643 KCSSLQSLPSSLCMFKSLTSLEIIDCQNFM----MLPYELGNLKALEMLIVDGTAIRE-----VPKSLNQL--------- 704 (963)
Q Consensus 643 ~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~----~~p~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l--------- 704 (963)
...+..+...+..+++|++|+|++|.+.. .+|..+.++++|++|+|++|.++. ++..+..+
T Consensus 80 -~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~ 158 (386)
T 2ca6_A 80 -PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 158 (386)
T ss_dssp -HHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -hHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccC
Confidence 00111222334678999999999999877 478888999999999999999872 34445555
Q ss_pred CCCcEEEccCCCCC-CCCCcccccccCCCCCcEEEccCCCCCC-----cCccccCCCCCccEEEcCCCCC-----cccCc
Q 002125 705 ALLFRLKLKNCSEL-DGISSSIFSLCMFKSLTSLEIIDCQNFM-----ILPDELGNLKALETLIIDGTAM-----REVPE 773 (963)
Q Consensus 705 ~~L~~L~L~~~~~l-~~lp~~~~~l~~l~~L~~L~l~~~~~~~-----~~p~~l~~l~~L~~L~L~~n~l-----~~lp~ 773 (963)
++|+.|++++|... ..+|.....+..+++|++|++++|.+.. ..|..+..+++|+.|+|++|.+ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 89999999999655 3444211223348899999999998762 3455788999999999999999 56888
Q ss_pred ccCCCCCCCEEECcCCCCcc-----cCcccc--CCCCCCEEEeccCC
Q 002125 774 SLGQLSSVKNLVLTNNNLKR-----LPESLN--QLSSLEYLQLHLRS 813 (963)
Q Consensus 774 ~l~~l~~L~~L~Ls~n~l~~-----lp~~l~--~l~~L~~L~L~~~~ 813 (963)
.+..+++|+.|+|++|.++. +|..+. .+++|+.|+|++|.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 99999999999999999984 467774 48999999998754
No 99
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.69 E-value=7.2e-16 Score=171.83 Aligned_cols=287 Identities=15% Similarity=0.153 Sum_probs=174.0
Q ss_pred ccccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhh---ccCCH
Q 002125 190 ETFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE---ETGGI 266 (963)
Q Consensus 190 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~---~~~~~ 266 (963)
+.++..+..|+||++++++|.+++..+ +++.|+|++|+|||||+++++++. + .+|+. ..... .....
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~-~~~~~~~~~~~~~ 74 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILID-CRELYAERGHITR 74 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE-HHHHHHTTTCBCH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE-eecccccccCCCH
Confidence 345566788999999999999998753 689999999999999999998864 2 55664 22211 01123
Q ss_pred HHHHHHHHHhhhc----------------CCC---CCCHHHHHHHH----cC-CceEEEEcCCCCHH--------H-HHH
Q 002125 267 KDLQKELLSKLLN----------------DRN---VWNIESQLNRL----AR-KKFLIVFDDVTHPR--------Q-IES 313 (963)
Q Consensus 267 ~~l~~~ll~~l~~----------------~~~---~~~~~~l~~~L----~~-k~~LlVLDdv~~~~--------~-~~~ 313 (963)
..+...+...+.. ... ....+.+.+.+ .. ++++||+||++... + +..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 3444444333211 000 12333333333 22 49999999996632 2 333
Q ss_pred HHHhccCCCCCceEEEEeCCchhhhc----------C--CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHH
Q 002125 314 LIRRLDRLASGSRVIITTRDKQVLKN----------C--RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKA 381 (963)
Q Consensus 314 l~~~l~~~~~gs~IivTTR~~~v~~~----------~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i 381 (963)
+...... .++.++|+|++....... . .....+++.+|+.+|+.+++....-..... ...+.+.++
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i 231 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEA 231 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHH
Confidence 3322221 257889999987543211 1 113479999999999999997754211111 123568899
Q ss_pred HHHhcCCchhHHHhhhhcCC-CCHHHHHHHHHHhhcCCChhHHHHHHHHhhCC---ChhhHHHHHhhhcccCccChhHHH
Q 002125 382 IKYAQGVPLALKVLGHHLCG-RSKEEWESAMRKLEVIPDKEIQEVLKISYDSL---DDPQKNVFLDIACFLEGEHRDEVT 457 (963)
Q Consensus 382 ~~~~~g~PLal~~l~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~la~f~~~~~~~~l~ 457 (963)
++.++|+|+++..++..+.. .+...+. ..+. ..+...+...+..+ ++..+.++..+|+ .......+.
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~ 302 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIR 302 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHH
Confidence 99999999999998875422 2222221 1110 11111122222223 7888999999988 233445555
Q ss_pred HHHhhc--CCC---hhhhHHhhhcccCceeecCEEEE-chhHHHHhh
Q 002125 458 SFFDAS--GFQ---AKIELSVLEGKSLITCFYNYIRM-HDLIRDMGR 498 (963)
Q Consensus 458 ~~~~~~--~~~---~~~~l~~L~~~sLi~~~~~~~~m-Hdlv~~~a~ 498 (963)
..+... +.. ...+++.|++.++|...++.|.+ |++++++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 444221 232 35679999999999887677766 778887754
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=2.9e-16 Score=169.90 Aligned_cols=172 Identities=25% Similarity=0.346 Sum_probs=144.8
Q ss_pred cCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCc
Q 002125 597 IFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPY 676 (963)
Q Consensus 597 ~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~ 676 (963)
+..+++|++|++++|.. ..+|. +..+++|++|++++|.+.+..|
T Consensus 42 ~~~l~~L~~L~l~~~~i----------------------------------~~~~~-~~~l~~L~~L~L~~n~l~~~~~- 85 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDI----------------------------------KSVQG-IQYLPNVTKLFLNGNKLTDIKP- 85 (291)
T ss_dssp HHHHHTCCEEECTTSCC----------------------------------CCCTT-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred hhhcCcccEEEccCCCc----------------------------------ccChh-HhcCCCCCEEEccCCccCCCcc-
Confidence 45688899999998743 23433 6678999999999998776544
Q ss_pred ccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCC
Q 002125 677 ELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLK 756 (963)
Q Consensus 677 ~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 756 (963)
+.++++|++|++++|.++.+|. +..+++|+.|++++|.. ..++ .+. .+++|+.|++++|.+.+. ..+..++
T Consensus 86 -l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i-~~~~-~l~---~l~~L~~L~l~~n~l~~~--~~l~~l~ 156 (291)
T 1h6t_A 86 -LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGI-SDIN-GLV---HLPQLESLYLGNNKITDI--TVLSRLT 156 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCC-CCCG-GGG---GCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred -cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcC-CCCh-hhc---CCCCCCEEEccCCcCCcc--hhhccCC
Confidence 8999999999999999998775 89999999999999954 4443 333 489999999999988765 5688999
Q ss_pred CccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccCCCC
Q 002125 757 ALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLRSPR 815 (963)
Q Consensus 757 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~~ 815 (963)
+|+.|++++|.++.++. +..+++|+.|+|++|.++.+|. +..+++|+.|++++|.+.
T Consensus 157 ~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 157 KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred CCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence 99999999999998877 9999999999999999999984 899999999999886554
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=9.4e-16 Score=170.81 Aligned_cols=194 Identities=19% Similarity=0.220 Sum_probs=104.1
Q ss_pred CCccCCCccccCCCCcEEeecCCCCcccccc-ccCCCCCccEEeCcCCccccccCCCCccccCCCCcccccccccccccc
Q 002125 565 GIKELPSSIECLSNLKKLYIVDCSKLESISS-SIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEK 643 (963)
Q Consensus 565 ~~~~lp~~~~~L~~L~~L~L~~~~~~~~lp~-~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~ 643 (963)
+...+|..+ .+++++|+|++|. +..+|. .|.+|++|++|+|++|.+++.
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~--------------------------- 69 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEV--------------------------- 69 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCE---------------------------
T ss_pred CCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCc---------------------------
Confidence 345677765 3579999999854 567774 688999999999999875432
Q ss_pred CcCCCcCCc-cccCCCCCCe-eecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCC
Q 002125 644 CSSLQSLPS-SLCMFKSLTS-LEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDG 720 (963)
Q Consensus 644 ~~~l~~lP~-~~~~l~~L~~-L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~ 720 (963)
+|. .|.++++|.+ +.+.+|.+....|..+.++++|++|++++|.++.+|.. +....++..|++.++..+..
T Consensus 70 ------i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 70 ------IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp ------ECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred ------cChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence 221 2334444443 23333444444445555555555555555555544432 33444455555555444444
Q ss_pred CCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCC-CCCcccCc-ccCCCCCCCEEECcCCCCcccCc
Q 002125 721 ISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDG-TAMREVPE-SLGQLSSVKNLVLTNNNLKRLPE 796 (963)
Q Consensus 721 lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~-n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~ 796 (963)
+|...+. .....++.|++++|.+.. +|.......+|+.|++.+ |.++.+|. .|+.+++|+.|+|++|+|+.+|.
T Consensus 144 l~~~~f~-~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 144 IERNSFV-GLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp ECTTSST-TSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred ccccchh-hcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 4432211 001235555555555433 333333344555555542 44555553 34555555555555555555553
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=2.6e-16 Score=186.78 Aligned_cols=176 Identities=21% Similarity=0.283 Sum_probs=140.3
Q ss_pred ccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCC
Q 002125 572 SIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLP 651 (963)
Q Consensus 572 ~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP 651 (963)
.+..|++|+.|++++|. +..+| .+..|++|+.|+|++|.+ ..+|
T Consensus 38 ~~~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l----------------------------------~~~~ 81 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKL----------------------------------TDIK 81 (605)
T ss_dssp CHHHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSCC----------------------------------CCCG
T ss_pred chhcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCCC----------------------------------CCCh
Confidence 35678889999998755 55565 588899999999998753 2344
Q ss_pred ccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCC
Q 002125 652 SSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMF 731 (963)
Q Consensus 652 ~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l 731 (963)
+ +..+++|+.|+|++|.+.+ +| .+.++++|+.|+|++|.++.+| .+..+++|+.|+|++|... .+ ..+ ..+
T Consensus 82 ~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l---~~l 152 (605)
T 1m9s_A 82 P-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DI-TVL---SRL 152 (605)
T ss_dssp G-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC-CC-GGG---GSC
T ss_pred h-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC-Cc-hhh---ccc
Confidence 4 6678899999999987654 44 7888999999999999998875 4888999999999998544 34 333 348
Q ss_pred CCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccC
Q 002125 732 KSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLP 795 (963)
Q Consensus 732 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 795 (963)
++|+.|+|++|.+.+..| +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|.+...|
T Consensus 153 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 899999999998877666 888999999999999999885 5888999999999999888766
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=5.8e-16 Score=167.58 Aligned_cols=176 Identities=21% Similarity=0.273 Sum_probs=144.8
Q ss_pred cccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCc
Q 002125 573 IECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPS 652 (963)
Q Consensus 573 ~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~ 652 (963)
+..+++|++|++++|. +..++ .+..+++|++|+|++|.. ..+|.
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~l----------------------------------~~~~~ 85 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKL----------------------------------TDIKP 85 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC----------------------------------CCCGG
T ss_pred hhhcCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCcc----------------------------------CCCcc
Confidence 4567889999998864 45555 488899999999998853 23444
Q ss_pred cccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCC
Q 002125 653 SLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFK 732 (963)
Q Consensus 653 ~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~ 732 (963)
+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++.++ .+..+++|+.|++++|.. ..+ ..+. .++
T Consensus 86 -l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l-~~~-~~l~---~l~ 156 (291)
T 1h6t_A 86 -LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDI-TVLS---RLT 156 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCC-CCC-GGGG---GCT
T ss_pred -cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcC-Ccc-hhhc---cCC
Confidence 7778999999999988655 44 4899999999999999999874 588999999999999854 444 3344 489
Q ss_pred CCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCc
Q 002125 733 SLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPE 796 (963)
Q Consensus 733 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 796 (963)
+|+.|++++|.+.+..| +..+++|+.|++++|.++.+|. +..+++|+.|+|++|.++..|.
T Consensus 157 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred CCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence 99999999998877655 8999999999999999999875 8999999999999999887763
No 104
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=1.4e-15 Score=169.96 Aligned_cols=286 Identities=14% Similarity=0.126 Sum_probs=171.3
Q ss_pred ccccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhh--ccCCHH
Q 002125 190 ETFQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE--ETGGIK 267 (963)
Q Consensus 190 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~--~~~~~~ 267 (963)
+.++..+..|+||++++++|.+ +.. +++.|+|++|+|||+|+++++++... ..+|+. ..... ......
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~ 75 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL---PYIYLD-LRKFEERNYISYK 75 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEE-GGGGTTCSCCCHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEE-chhhccccCCCHH
Confidence 3455567889999999999999 753 58999999999999999999987643 246664 22210 001222
Q ss_pred HHHHHHHHhhh-------------cC-------C----------CCCCHHHHHHHHcC---CceEEEEcCCCCHH-----
Q 002125 268 DLQKELLSKLL-------------ND-------R----------NVWNIESQLNRLAR---KKFLIVFDDVTHPR----- 309 (963)
Q Consensus 268 ~l~~~ll~~l~-------------~~-------~----------~~~~~~~l~~~L~~---k~~LlVLDdv~~~~----- 309 (963)
.....+...+. .. . .....+.+.+.+.. ++++|||||++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 22222222110 00 0 01234555555542 48999999996532
Q ss_pred HHHHHHHhccCCCCCceEEEEeCCchhhhc----------C-Cc-ceEEEeccCCHHHHHHHHHHhhcC-CCCCCCcHHH
Q 002125 310 QIESLIRRLDRLASGSRVIITTRDKQVLKN----------C-RA-RQIFRMKELEDADAHKLFCQCAFG-GDHPDASHIE 376 (963)
Q Consensus 310 ~~~~l~~~l~~~~~gs~IivTTR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~-~~~~~~~~~~ 376 (963)
++..++..+....++.++|+|+|....... . +. ...+++.+|+.+|+.+++....-. +.....
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---- 231 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---- 231 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----
Confidence 222222221111247889999997643211 1 11 358999999999999999875421 112221
Q ss_pred HHHHHHHHhcCCchhHHHhhhhcCC-CCHHHHHHH-HHHhhcCCChhHHHHHH-HHhh--CCChhhHHHHHhhhcccCcc
Q 002125 377 LTDKAIKYAQGVPLALKVLGHHLCG-RSKEEWESA-MRKLEVIPDKEIQEVLK-ISYD--SLDDPQKNVFLDIACFLEGE 451 (963)
Q Consensus 377 ~~~~i~~~~~g~PLal~~l~~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~la~f~~~~ 451 (963)
..++++.++|+|+++..++..+.. .+...|... .+.. ...+...+. ..++ .|++..+.++..+|+ . .
T Consensus 232 -~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~- 303 (357)
T 2fna_A 232 -YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----KKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G- 303 (357)
T ss_dssp -HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-
T ss_pred -HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-
Confidence 278999999999999998876532 233333221 1110 011111222 1111 678889999999998 2 2
Q ss_pred ChhHHHHHHh-hcC--C---ChhhhHHhhhcccCceeecCEEE-EchhHHHHh
Q 002125 452 HRDEVTSFFD-ASG--F---QAKIELSVLEGKSLITCFYNYIR-MHDLIRDMG 497 (963)
Q Consensus 452 ~~~~l~~~~~-~~~--~---~~~~~l~~L~~~sLi~~~~~~~~-mHdlv~~~a 497 (963)
....+..... ..| . ....+++.|++.++|....+.|+ -|++++++.
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 4455543321 223 2 23567999999999988766666 578888765
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=9.9e-16 Score=179.67 Aligned_cols=185 Identities=22% Similarity=0.274 Sum_probs=146.2
Q ss_pred eeeEEecCC---ccCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccc
Q 002125 558 TLELVKVGI---KELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERL 634 (963)
Q Consensus 558 ~L~~l~~~~---~~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l 634 (963)
+|+.++++. ..+|..+ +++|++|++++|. +..+| ..+++|++|+|++|.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l--------------------- 112 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRL--------------------- 112 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCC---------------------
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCC---------------------
Confidence 444444443 4567655 3789999999965 45788 4579999999999853
Q ss_pred cccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccC
Q 002125 635 ASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKN 714 (963)
Q Consensus 635 ~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~ 714 (963)
..+|. +.+ +|++|+|++|.+.+ +|. .+++|+.|++++|.++.+|. .+++|+.|+|++
T Consensus 113 -------------~~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 113 -------------STLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN 169 (571)
T ss_dssp -------------SCCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred -------------CCcch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCC
Confidence 24566 543 89999999998776 776 68999999999999999987 688999999999
Q ss_pred CCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCc-------cEEEcCCCCCcccCcccCCCCCCCEEECc
Q 002125 715 CSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKAL-------ETLIIDGTAMREVPESLGQLSSVKNLVLT 787 (963)
Q Consensus 715 ~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-------~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls 787 (963)
|. +..+|. +. ++|+.|++++|.+. .+|. +.. +| +.|+|++|.|+.+|..+..+++|+.|+|+
T Consensus 170 N~-L~~lp~-l~-----~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 170 NQ-LTFLPE-LP-----ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp SC-CSCCCC-CC-----TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred CC-CCCcch-hh-----CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 95 455787 42 79999999999876 5666 554 77 99999999999999999999999999999
Q ss_pred CCCCcc-cCccccCCCC
Q 002125 788 NNNLKR-LPESLNQLSS 803 (963)
Q Consensus 788 ~n~l~~-lp~~l~~l~~ 803 (963)
+|.++. +|..+..++.
T Consensus 239 ~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 239 DNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SSSCCHHHHHHHHHHHH
T ss_pred CCcCCCcCHHHHHHhhc
Confidence 999974 6776665443
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=6.1e-17 Score=179.48 Aligned_cols=206 Identities=16% Similarity=0.140 Sum_probs=157.8
Q ss_pred CccccC--CCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCC
Q 002125 571 SSIECL--SNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQ 648 (963)
Q Consensus 571 ~~~~~L--~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~ 648 (963)
..+..+ ++++.|++++|...+. +..+..+++|++|+|++|.... .
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~-~~~~~~~~~L~~L~L~~~~l~~--------------------------------~ 108 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIEV--------------------------------S 108 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEECH--------------------------------H
T ss_pred HHHHhhhhccceEEEcCCcccccc-chhhccCCCCCEEEccCCCcCH--------------------------------H
Confidence 345556 7899999988654444 4456788999999999885321 0
Q ss_pred cCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCc-ccc--ccCccccCCCCCcEEEccCCCCCCC--CCc
Q 002125 649 SLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGT-AIR--EVPKSLNQLALLFRLKLKNCSELDG--ISS 723 (963)
Q Consensus 649 ~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~L~~~~~l~~--lp~ 723 (963)
.+|..+..+++|++|++++|.+.+..|..++++++|++|++++| .++ .+|..+.++++|+.|++++|..+.. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 25556777899999999999887788888889999999999998 677 4777788899999999999843332 455
Q ss_pred ccccccCCC-CCcEEEccCCC--CC-CcCccccCCCCCccEEEcCCCC-Cc-ccCcccCCCCCCCEEECcCCC-Ccc-cC
Q 002125 724 SIFSLCMFK-SLTSLEIIDCQ--NF-MILPDELGNLKALETLIIDGTA-MR-EVPESLGQLSSVKNLVLTNNN-LKR-LP 795 (963)
Q Consensus 724 ~~~~l~~l~-~L~~L~l~~~~--~~-~~~p~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~Ls~n~-l~~-lp 795 (963)
.+.. ++ +|++|++++|. +. +.+|..+..+++|+.|++++|. ++ ..+..+..+++|+.|+|++|. +.. -.
T Consensus 189 ~~~~---l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 189 AVAH---VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp HHHH---SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred HHHh---cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence 4544 88 99999999984 43 4567777889999999999998 55 667788899999999999995 321 11
Q ss_pred ccccCCCCCCEEEeccC
Q 002125 796 ESLNQLSSLEYLQLHLR 812 (963)
Q Consensus 796 ~~l~~l~~L~~L~L~~~ 812 (963)
..+.++++|+.|+++++
T Consensus 266 ~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGCTTCCEEECTTS
T ss_pred HHHhcCCCCCEEeccCc
Confidence 25778899999998873
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=5.1e-16 Score=157.67 Aligned_cols=154 Identities=14% Similarity=0.178 Sum_probs=132.9
Q ss_pred ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCC
Q 002125 654 LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKS 733 (963)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~ 733 (963)
...+++|++|++++|.+. .+| .+..+++|++|++++|.++.++ .+..+++|+.|++++|...+..|..+.. +++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~---l~~ 113 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSG---LTS 113 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTT---CTT
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcC---CCC
Confidence 356889999999998765 666 7889999999999999887665 6889999999999999766556666655 899
Q ss_pred CcEEEccCCCCCCcCccccCCCCCccEEEcCCCC-CcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccC
Q 002125 734 LTSLEIIDCQNFMILPDELGNLKALETLIIDGTA-MREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLR 812 (963)
Q Consensus 734 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 812 (963)
|+.|++++|.+.+..|..++.+++|+.|++++|. ++.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc
Confidence 9999999999988888889999999999999998 88887 6899999999999999999988 7889999999999886
Q ss_pred CCC
Q 002125 813 SPR 815 (963)
Q Consensus 813 ~~~ 815 (963)
...
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 643
No 108
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=5.1e-17 Score=180.13 Aligned_cols=197 Identities=14% Similarity=0.128 Sum_probs=145.9
Q ss_pred eeeeEEecCCc---cCCCccccCCCCcEEeecCCCCccc-cccccCCCCCccEEeCcCCccccccCCCCccccCCCCccc
Q 002125 557 YTLELVKVGIK---ELPSSIECLSNLKKLYIVDCSKLES-ISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIE 632 (963)
Q Consensus 557 ~~L~~l~~~~~---~lp~~~~~L~~L~~L~L~~~~~~~~-lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~ 632 (963)
..++.+++... ..+..+..+++|++|++++|...+. +|..+..+++|++|+|++|....
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~----------------- 132 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD----------------- 132 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-----------------
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-----------------
Confidence 34444444443 2334466788899999999875544 77788899999999999885321
Q ss_pred cccccccccccCcCCCcCCccccCCCCCCeeeccccc-ccc-cCCcccCCCCCCcEEEecCc-cccc--cCccccCCC-C
Q 002125 633 RLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQ-NFM-MLPYELGNLKALEMLIVDGT-AIRE--VPKSLNQLA-L 706 (963)
Q Consensus 633 ~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~-~~~-~~p~~~~~l~~L~~L~L~~n-~l~~--lp~~~~~l~-~ 706 (963)
..|..+..+++|++|++++|. +.+ .+|..+.++++|++|++++| .++. ++..+..++ +
T Consensus 133 ----------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 133 ----------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp ----------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred ----------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 344556678899999999984 443 36777888899999999999 8873 677788888 9
Q ss_pred CcEEEccCCC--CC-CCCCcccccccCCCCCcEEEccCCC-CCCcCccccCCCCCccEEEcCCCC-Cc-ccCcccCCCCC
Q 002125 707 LFRLKLKNCS--EL-DGISSSIFSLCMFKSLTSLEIIDCQ-NFMILPDELGNLKALETLIIDGTA-MR-EVPESLGQLSS 780 (963)
Q Consensus 707 L~~L~L~~~~--~l-~~lp~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~ 780 (963)
|+.|++++|. .. ..+|..+.. +++|+.|++++|. +....+..+..+++|+.|++++|. +. .....++.+++
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~---~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRR---CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHH---CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCEEEeCCCcccCCHHHHHHHHhh---CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 9999999884 22 334554444 8899999999998 555667788889999999999985 22 11125778899
Q ss_pred CCEEECcCC
Q 002125 781 VKNLVLTNN 789 (963)
Q Consensus 781 L~~L~Ls~n 789 (963)
|+.|+|++|
T Consensus 274 L~~L~l~~~ 282 (336)
T 2ast_B 274 LKTLQVFGI 282 (336)
T ss_dssp CCEEECTTS
T ss_pred CCEEeccCc
Confidence 999999998
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=4.8e-18 Score=200.48 Aligned_cols=202 Identities=18% Similarity=0.187 Sum_probs=152.7
Q ss_pred ccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCcc
Q 002125 574 ECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSS 653 (963)
Q Consensus 574 ~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~ 653 (963)
..+++|+.|+|++| .++.+|..+++|++|+.|++++|..+..+ ...+..+.....+|..
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l--------------------~~ll~~~~~~~~~~~~ 404 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTI--------------------ILLMRALDPLLYEKET 404 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHH--------------------HHHHHHHCTGGGHHHH
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhH--------------------HHHHHhcccccCCHHH
Confidence 56888999999985 46789999999999999999776422110 0001111122344555
Q ss_pred ccCCCCCCeee-cccc-------------cccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCC
Q 002125 654 LCMFKSLTSLE-IIDC-------------QNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELD 719 (963)
Q Consensus 654 ~~~l~~L~~L~-L~~~-------------~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~ 719 (963)
++.+++|+.|+ ++.| .+.. +|. ..|+.|+|++|.++.+|. ++++++|+.|+|++|.. .
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l-~ 476 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL-R 476 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCC-C
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccc-cCc-----cCceEEEecCCCCCCCcC-ccccccCcEeecCcccc-c
Confidence 56666666666 3333 2221 221 248999999999999987 99999999999999854 4
Q ss_pred CCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc--CcccCCCCCCCEEECcCCCCcccCcc
Q 002125 720 GISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV--PESLGQLSSVKNLVLTNNNLKRLPES 797 (963)
Q Consensus 720 ~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp~~ 797 (963)
.+|..+.. +++|+.|++++|.+.+ +| .++++++|+.|+|++|.++.+ |..++.+++|+.|+|++|.++.+|..
T Consensus 477 ~lp~~~~~---l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 477 ALPPALAA---LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCCGGGGG---CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ccchhhhc---CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 88887766 8999999999998877 67 799999999999999999988 89999999999999999999988754
Q ss_pred c----cCCCCCCEEEe
Q 002125 798 L----NQLSSLEYLQL 809 (963)
Q Consensus 798 l----~~l~~L~~L~L 809 (963)
+ ..+++|+.|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 3 44788888864
No 110
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=9e-17 Score=186.52 Aligned_cols=165 Identities=21% Similarity=0.101 Sum_probs=110.2
Q ss_pred CCccccCCCCCCeeecccccccccC-----CcccCCCCCCcEEEecCccccc-----cCccccCCCCCcEEEccCCCCCC
Q 002125 650 LPSSLCMFKSLTSLEIIDCQNFMML-----PYELGNLKALEMLIVDGTAIRE-----VPKSLNQLALLFRLKLKNCSELD 719 (963)
Q Consensus 650 lP~~~~~l~~L~~L~L~~~~~~~~~-----p~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~L~~~~~l~ 719 (963)
+|..+..+++|++|++++|.+...- +..+..+++|++|++++|.++. ++..+.++++|+.|++++|....
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 4555666788888888887654431 2233457788888888888775 67777778888888888874322
Q ss_pred CCCcccccc--cCCCCCcEEEccCCCCCCc----CccccCCCCCccEEEcCCCCCccc-C----cccCC-CCCCCEEECc
Q 002125 720 GISSSIFSL--CMFKSLTSLEIIDCQNFMI----LPDELGNLKALETLIIDGTAMREV-P----ESLGQ-LSSVKNLVLT 787 (963)
Q Consensus 720 ~lp~~~~~l--~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~L~~n~l~~l-p----~~l~~-l~~L~~L~Ls 787 (963)
..+..+... ...++|+.|++++|.+... ++..+..+++|+.|++++|.++.. + ..+.. .++|+.|+|+
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 212122110 1135788888888876654 455666778888888888877632 2 22332 5688888888
Q ss_pred CCCCc-----ccCccccCCCCCCEEEeccCCC
Q 002125 788 NNNLK-----RLPESLNQLSSLEYLQLHLRSP 814 (963)
Q Consensus 788 ~n~l~-----~lp~~l~~l~~L~~L~L~~~~~ 814 (963)
+|.++ .+|..+..+++|+.|+|++|..
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 88887 5777777788888888877543
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=6.7e-17 Score=181.06 Aligned_cols=209 Identities=15% Similarity=0.091 Sum_probs=123.5
Q ss_pred CccccCCCCcEEeecCCCCccccc----cccCCCC-CccEEeCcCCccccccCCCCccccCCCCccccccccccccccCc
Q 002125 571 SSIECLSNLKKLYIVDCSKLESIS----SSIFKLK-SLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCS 645 (963)
Q Consensus 571 ~~~~~L~~L~~L~L~~~~~~~~lp----~~~~~L~-~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~ 645 (963)
..+...++|++|++++|...+.-+ ..+.+++ +|++|+|++|.+...
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----------------------------- 66 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK----------------------------- 66 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-----------------------------
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-----------------------------
Confidence 334444558888888866443333 5666777 788888888754221
Q ss_pred CCCcCCccccC----C-CCCCeeecccccccccCCcc----cCCC-CCCcEEEecCccccccCcc-----ccC-CCCCcE
Q 002125 646 SLQSLPSSLCM----F-KSLTSLEIIDCQNFMMLPYE----LGNL-KALEMLIVDGTAIREVPKS-----LNQ-LALLFR 709 (963)
Q Consensus 646 ~l~~lP~~~~~----l-~~L~~L~L~~~~~~~~~p~~----~~~l-~~L~~L~L~~n~l~~lp~~-----~~~-l~~L~~ 709 (963)
.+..+.. . ++|++|+|++|.+.+..+.. +..+ ++|++|++++|.++..+.. +.. .++|+.
T Consensus 67 ----~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 67 ----NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp ----CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred ----HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 1111222 2 67777777777766555543 3333 6777777777777654432 333 257777
Q ss_pred EEccCCCCCCCCCccccc-ccCCC-CCcEEEccCCCCCCcCccc----cCCC-CCccEEEcCCCCCcc-----cCcccCC
Q 002125 710 LKLKNCSELDGISSSIFS-LCMFK-SLTSLEIIDCQNFMILPDE----LGNL-KALETLIIDGTAMRE-----VPESLGQ 777 (963)
Q Consensus 710 L~L~~~~~l~~lp~~~~~-l~~l~-~L~~L~l~~~~~~~~~p~~----l~~l-~~L~~L~L~~n~l~~-----lp~~l~~ 777 (963)
|+|++|.....-+..+.. +..++ +|++|++++|.+.+..+.. +..+ ++|+.|+|++|.++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 777777543322211111 11133 7777777777766554433 3334 477777777777775 5555555
Q ss_pred C-CCCCEEECcCCCCcccC-----ccccCCCCCCEEEeccC
Q 002125 778 L-SSVKNLVLTNNNLKRLP-----ESLNQLSSLEYLQLHLR 812 (963)
Q Consensus 778 l-~~L~~L~Ls~n~l~~lp-----~~l~~l~~L~~L~L~~~ 812 (963)
+ ++|+.|+|++|.++..+ ..+..+++|+.|+|++|
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 3 47777777777776543 23456677777777654
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=5.6e-15 Score=175.32 Aligned_cols=189 Identities=25% Similarity=0.318 Sum_probs=153.9
Q ss_pred CCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccCC
Q 002125 578 NLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMF 657 (963)
Q Consensus 578 ~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l 657 (963)
.+..+.+..+.....+ .+..|++|+.|++++|.+ ..+| .+..+
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i----------------------------------~~l~-~l~~l 64 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI----------------------------------KSVQ-GIQYL 64 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCC----------------------------------CCCT-TGGGC
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCC----------------------------------CCCh-HHccC
Confidence 3555666654333322 245678888888887642 2444 37779
Q ss_pred CCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEE
Q 002125 658 KSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSL 737 (963)
Q Consensus 658 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L 737 (963)
++|+.|+|++|.+.+..| +.++++|+.|+|++|.++.+| .+..+++|+.|+|++|... .++ .+. .+++|+.|
T Consensus 65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~---~l~~L~~L 136 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGIS-DIN-GLV---HLPQLESL 136 (605)
T ss_dssp TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCC-CCG-GGG---GCTTCSEE
T ss_pred CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCC-CCc-ccc---CCCccCEE
Confidence 999999999998776555 899999999999999999887 6899999999999999544 444 333 48999999
Q ss_pred EccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEEEeccCCCC
Q 002125 738 EIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYLQLHLRSPR 815 (963)
Q Consensus 738 ~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~~ 815 (963)
+|++|.+.+. ..+..+++|+.|+|++|.++.++. +..+++|+.|+|++|.|+.+| .+..|++|+.|+|++|.+.
T Consensus 137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 9999988775 578999999999999999998877 999999999999999999986 6899999999999876543
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=3.6e-15 Score=151.37 Aligned_cols=154 Identities=17% Similarity=0.227 Sum_probs=126.9
Q ss_pred CCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccCCCCCCeeecccccccccCCcc
Q 002125 598 FKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYE 677 (963)
Q Consensus 598 ~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~ 677 (963)
..+++|++|++++|.+ ..+| .+..+++|++|++++|.. .. +..
T Consensus 41 ~~l~~L~~L~l~~n~i----------------------------------~~l~-~l~~l~~L~~L~l~~n~~-~~-~~~ 83 (197)
T 4ezg_A 41 AQMNSLTYITLANINV----------------------------------TDLT-GIEYAHNIKDLTINNIHA-TN-YNP 83 (197)
T ss_dssp HHHHTCCEEEEESSCC----------------------------------SCCT-TGGGCTTCSEEEEESCCC-SC-CGG
T ss_pred hhcCCccEEeccCCCc----------------------------------cChH-HHhcCCCCCEEEccCCCC-Cc-chh
Confidence 5678899999998743 2455 477789999999999943 33 347
Q ss_pred cCCCCCCcEEEecCccccc-cCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCC
Q 002125 678 LGNLKALEMLIVDGTAIRE-VPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLK 756 (963)
Q Consensus 678 ~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 756 (963)
+.++++|++|++++|.++. .|..+..+++|+.|++++|...+..|..+.. +++|+.|++++|...+.+| .+..++
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~---l~~L~~L~L~~n~~i~~~~-~l~~l~ 159 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT---LPKVNSIDLSYNGAITDIM-PLKTLP 159 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT---CSSCCEEECCSCTBCCCCG-GGGGCS
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh---CCCCCEEEccCCCCccccH-hhcCCC
Confidence 8899999999999999985 6888999999999999999776656666655 8999999999998666666 689999
Q ss_pred CccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcc
Q 002125 757 ALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKR 793 (963)
Q Consensus 757 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 793 (963)
+|+.|++++|.++.++ .+..+++|+.|++++|++..
T Consensus 160 ~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 160 ELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred CCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 9999999999999988 78999999999999998753
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=1.1e-15 Score=170.99 Aligned_cols=252 Identities=16% Similarity=0.105 Sum_probs=172.4
Q ss_pred EEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccCCC-C
Q 002125 581 KLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMFK-S 659 (963)
Q Consensus 581 ~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~-~ 659 (963)
+++++.|+..+.+|..+...++|++|||++|.+... ....+-..+..++ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----------------------------~~~~l~~~l~~~~~~ 52 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-----------------------------STVELIQAFANTPAS 52 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGS-----------------------------CHHHHHHHHHTCCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChH-----------------------------HHHHHHHHHHhCCCc
Confidence 467788777778887777777899999999864210 0001113456677 8
Q ss_pred CCeeecccccccccCCcccCCC-----CCCcEEEecCccccccCcc-----ccCC-CCCcEEEccCCCCCCCCCccccc-
Q 002125 660 LTSLEIIDCQNFMMLPYELGNL-----KALEMLIVDGTAIREVPKS-----LNQL-ALLFRLKLKNCSELDGISSSIFS- 727 (963)
Q Consensus 660 L~~L~L~~~~~~~~~p~~~~~l-----~~L~~L~L~~n~l~~lp~~-----~~~l-~~L~~L~L~~~~~l~~lp~~~~~- 727 (963)
|++|+|++|.+....+..+..+ ++|++|+|++|.++..+.. +..+ ++|+.|++++|......+..+..
T Consensus 53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 9999999999888777666664 9999999999999855433 5555 89999999999754433333322
Q ss_pred ccC-CCCCcEEEccCCCCCCc----CccccCCCC-CccEEEcCCCCCcccC-----cccCCC-CCCCEEECcCCCCcc--
Q 002125 728 LCM-FKSLTSLEIIDCQNFMI----LPDELGNLK-ALETLIIDGTAMREVP-----ESLGQL-SSVKNLVLTNNNLKR-- 793 (963)
Q Consensus 728 l~~-l~~L~~L~l~~~~~~~~----~p~~l~~l~-~L~~L~L~~n~l~~lp-----~~l~~l-~~L~~L~Ls~n~l~~-- 793 (963)
+.. .++|++|++++|.+... ++..+..++ +|++|+|++|.++..+ ..+..+ ++|+.|+|++|.++.
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 222 25999999999988753 444455665 9999999999998554 245556 599999999999987
Q ss_pred ---cCccccC-CCCCCEEEeccCCCC---------------CCceecCCcchhhhHhhCchhhHHHHhccccccccceee
Q 002125 794 ---LPESLNQ-LSSLEYLQLHLRSPR---------------KLTSLNLSVNLRNYLKLDPNELSEIVKDGWMKQSFAKSK 854 (963)
Q Consensus 794 ---lp~~l~~-l~~L~~L~L~~~~~~---------------~L~~L~l~~n~~~~~~l~~n~l~~~~~~~~~~~~~~~~~ 854 (963)
+|..+.. .++|+.|+|++|.+. +|+.|+++.|... .+....+.. ....+.....+..+
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~--~i~~~~~~~-l~~~~~~l~~L~~L 289 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK--NMSKEQCKA-LGAAFPNIQKIILV 289 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT--TCCHHHHHH-HHTTSTTCCEEEEE
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc--ccCHHHHHH-HHHHhccCCceEEE
Confidence 7777766 469999999877653 3445544444210 001111111 22334445556677
Q ss_pred eecCCCCCCC
Q 002125 855 YFPGNEIPKW 864 (963)
Q Consensus 855 ~~~g~~iP~w 864 (963)
.+.||++..-
T Consensus 290 dL~~N~l~~~ 299 (362)
T 3goz_A 290 DKNGKEIHPS 299 (362)
T ss_dssp CTTSCBCCGG
T ss_pred ecCCCcCCCc
Confidence 7888877543
No 115
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=2.4e-14 Score=163.34 Aligned_cols=279 Identities=13% Similarity=0.064 Sum_probs=167.0
Q ss_pred cCCCcccchhhHHHHHHhH-hc--CC--CCeEEEEE--EccCCCChhhHHHHHHHHHhcc-----CCc-eEEEEecchhh
Q 002125 195 YNKDLVGVEWRIKEIESLL-CT--GF--AGVYILGI--WGIGGIGKTTIADAVFNKISRH-----FEG-SYFAQNVREAE 261 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----f~~-~~~~~~~~~~~ 261 (963)
.+..++||+++++++.+++ .. .. ...+.+.| +|++|+||||||+++++..... ++. .+|+. ..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AF 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GG
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CC
Confidence 4578999999999999988 52 12 23456667 9999999999999999877553 232 34544 12
Q ss_pred ccCCHHHHHHHHHHhhhcCCCC--CC----HHHHHHHHc--CCceEEEEcCCCCH--------HHHHHHHHhccCC---C
Q 002125 262 ETGGIKDLQKELLSKLLNDRNV--WN----IESQLNRLA--RKKFLIVFDDVTHP--------RQIESLIRRLDRL---A 322 (963)
Q Consensus 262 ~~~~~~~l~~~ll~~l~~~~~~--~~----~~~l~~~L~--~k~~LlVLDdv~~~--------~~~~~l~~~l~~~---~ 322 (963)
.......+..+++..+...... .. .+.+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 3345667778888777543221 12 234444554 67999999999764 3344443333221 2
Q ss_pred --CCceEEEEeCCchhhhcC---------CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc-----
Q 002125 323 --SGSRVIITTRDKQVLKNC---------RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQ----- 386 (963)
Q Consensus 323 --~gs~IivTTR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~----- 386 (963)
....||+||+...+.... .....+++++|+.+++.++|...+........-..+....+++.++
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 344578888765432111 1123499999999999999976532101111123467888999999
Q ss_pred -CCchhHHHhhhhc------CC---CCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCChhhHHHHHhhhcccC----ccC
Q 002125 387 -GVPLALKVLGHHL------CG---RSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLE----GEH 452 (963)
Q Consensus 387 -g~PLal~~l~~~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~----~~~ 452 (963)
|.|..+..+.... .+ .+.+.+..++..... ...+...+..||+.++.++..++.+.. ...
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 9997655443321 11 123344333332110 223444668899999999998987642 122
Q ss_pred hhHHHH----HH-hhcCCC------hhhhHHhhhcccCceee
Q 002125 453 RDEVTS----FF-DASGFQ------AKIELSVLEGKSLITCF 483 (963)
Q Consensus 453 ~~~l~~----~~-~~~~~~------~~~~l~~L~~~sLi~~~ 483 (963)
...+.. +. ...|.. ...+++.|++.++|...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 333222 22 222321 24568999999999765
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=6.9e-15 Score=164.46 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=134.0
Q ss_pred CCCcCCccccCCCCCCeeecccccccccCCcccC-CCCCCcEEEecCccccccCc-cccCCCCCcEEEccCCCCCCCCCc
Q 002125 646 SLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELG-NLKALEMLIVDGTAIREVPK-SLNQLALLFRLKLKNCSELDGISS 723 (963)
Q Consensus 646 ~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~-~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~ 723 (963)
.+..+|..+. +.++.|+|++|.+.+..+..+. ++++|++|+|++|.|+.++. .+.++++|+.|+|++|.. ..++.
T Consensus 29 ~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~ 105 (361)
T 2xot_A 29 QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDE 105 (361)
T ss_dssp CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECT
T ss_pred CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC-CcCCH
Confidence 3456777653 5689999999998887777787 99999999999999998875 589999999999999964 44544
Q ss_pred -ccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCccc----CCCCCCCEEECcCCCCcccC-cc
Q 002125 724 -SIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESL----GQLSSVKNLVLTNNNLKRLP-ES 797 (963)
Q Consensus 724 -~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l----~~l~~L~~L~Ls~n~l~~lp-~~ 797 (963)
.+.. +++|+.|+|++|.+.+..|..|.++++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+|+.+| ..
T Consensus 106 ~~~~~---l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 106 FLFSD---LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp TTTTT---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHH
T ss_pred HHhCC---CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHH
Confidence 3444 899999999999998888889999999999999999999998775 67999999999999999998 45
Q ss_pred ccCCCCC--CEEEeccCC
Q 002125 798 LNQLSSL--EYLQLHLRS 813 (963)
Q Consensus 798 l~~l~~L--~~L~L~~~~ 813 (963)
+..++.+ +.|+|++|.
T Consensus 183 ~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHSCHHHHTTEECCSSC
T ss_pred hhhccHhhcceEEecCCC
Confidence 7777763 667776654
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=148.33 Aligned_cols=127 Identities=19% Similarity=0.231 Sum_probs=74.3
Q ss_pred CcEEEecCccccccCc--cccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEE
Q 002125 684 LEMLIVDGTAIREVPK--SLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETL 761 (963)
Q Consensus 684 L~~L~L~~n~l~~lp~--~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L 761 (963)
+++|+|++|.++.++. .+..+++|+.|+|++|...+..+..+.. +++|+.|++++|.+.+..+..|.++++|++|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---ASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT---CTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC---CCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 4455555555554422 2455555555555555332222223333 5566666666666655555566667777777
Q ss_pred EcCCCCCccc-CcccCCCCCCCEEECcCCCCccc-CccccCCCCCCEEEeccCC
Q 002125 762 IIDGTAMREV-PESLGQLSSVKNLVLTNNNLKRL-PESLNQLSSLEYLQLHLRS 813 (963)
Q Consensus 762 ~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~ 813 (963)
+|++|.++.+ |..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|.
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 7777777655 45566777777777777777766 4556666666666666543
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.2e-14 Score=149.00 Aligned_cols=135 Identities=15% Similarity=0.159 Sum_probs=53.1
Q ss_pred CCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcc-cccccCCCCC
Q 002125 657 FKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSS-IFSLCMFKSL 734 (963)
Q Consensus 657 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~l~~L 734 (963)
+++|++|++++|.+.+..+..+.++++|++|++++|.++.+|.. +..+++|+.|++++|... .+|.. +.. +++|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~---l~~L 126 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDK---LTQL 126 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT---CTTC
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhcc---CCcC
Confidence 34444444444433332222333444444444444444433332 334444444444443221 22221 111 3444
Q ss_pred cEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCc-ccCccccCC
Q 002125 735 TSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLK-RLPESLNQL 801 (963)
Q Consensus 735 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l 801 (963)
+.|++++|.+.+..+..+..+++|+.|++++|.+. +.+++|+.|+++.|+++ .+|..++.+
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 44444444443333333444444444444444322 22334444444444444 344444433
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=6.8e-17 Score=190.64 Aligned_cols=177 Identities=22% Similarity=0.211 Sum_probs=145.6
Q ss_pred CCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccCCCCCCeeeccccc--------
Q 002125 598 FKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQ-------- 669 (963)
Q Consensus 598 ~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~-------- 669 (963)
..+++|+.|+|++|. ++.+|..++++++|+.|++++|.
T Consensus 346 ~~~~~L~~L~Ls~n~----------------------------------L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l 391 (567)
T 1dce_A 346 ATDEQLFRCELSVEK----------------------------------STVLQSELESCKELQELEPENKWCLLTIILL 391 (567)
T ss_dssp STTTTSSSCCCCHHH----------------------------------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccCccceeccCChhh----------------------------------HHhhHHHHHHHHHHHHhccccchhhhhHHHH
Confidence 567888889998874 33678888889999999987764
Q ss_pred -----ccccCCcccCCCCCCcEEE-ecCccccccCc------cccC--CCCCcEEEccCCCCCCCCCcccccccCCCCCc
Q 002125 670 -----NFMMLPYELGNLKALEMLI-VDGTAIREVPK------SLNQ--LALLFRLKLKNCSELDGISSSIFSLCMFKSLT 735 (963)
Q Consensus 670 -----~~~~~p~~~~~l~~L~~L~-L~~n~l~~lp~------~~~~--l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~ 735 (963)
..+..|..++++++|+.|+ ++.|.+..++. .+.. ...|+.|+|++| .+..+|. +.. +++|+
T Consensus 392 l~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~---l~~L~ 466 (567)
T 1dce_A 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQ---LLLVT 466 (567)
T ss_dssp HHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGG---GTTCC
T ss_pred HHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccc---cccCc
Confidence 5667788888889999998 66665543332 1111 135999999999 4556786 555 89999
Q ss_pred EEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCccc--CccccCCCCCCEEEeccCC
Q 002125 736 SLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRL--PESLNQLSSLEYLQLHLRS 813 (963)
Q Consensus 736 ~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~~~ 813 (963)
.|++++|.+. .+|..++++++|+.|+|++|.++.+| .++.+++|+.|+|++|+|+.+ |..++.+++|+.|+|++|.
T Consensus 467 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 467 HLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred EeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 9999999887 78999999999999999999999999 899999999999999999988 8999999999999999876
Q ss_pred CC
Q 002125 814 PR 815 (963)
Q Consensus 814 ~~ 815 (963)
+.
T Consensus 545 l~ 546 (567)
T 1dce_A 545 LC 546 (567)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=3.1e-14 Score=147.05 Aligned_cols=137 Identities=18% Similarity=0.300 Sum_probs=73.1
Q ss_pred CCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcccccc-CccccCCCCCcEEEccCCCCCCCCCccc
Q 002125 647 LQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREV-PKSLNQLALLFRLKLKNCSELDGISSSI 725 (963)
Q Consensus 647 l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~ 725 (963)
++.+|..+. ++|+.|++++|.+.+..+..+.++++|++|+|++|.++.+ |..+.++++|+.|+|++|
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N---------- 90 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN---------- 90 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS----------
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC----------
Confidence 334555442 4566666666665555555566666666666666666544 444555555555555555
Q ss_pred ccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCcccCc-cccCCCC
Q 002125 726 FSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLKRLPE-SLNQLSS 803 (963)
Q Consensus 726 ~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~ 803 (963)
.+....+..|.++++|+.|+|++|.++.+ |..|..+++|+.|+|++|.|+.+|. .+..+++
T Consensus 91 -----------------~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 153 (220)
T 2v9t_B 91 -----------------KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153 (220)
T ss_dssp -----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred -----------------cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC
Confidence 33333333344455555555555555544 3345555555555555555555543 2455555
Q ss_pred CCEEEeccC
Q 002125 804 LEYLQLHLR 812 (963)
Q Consensus 804 L~~L~L~~~ 812 (963)
|+.|+|++|
T Consensus 154 L~~L~L~~N 162 (220)
T 2v9t_B 154 IQTMHLAQN 162 (220)
T ss_dssp CCEEECCSS
T ss_pred CCEEEeCCC
Confidence 555555443
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=4e-14 Score=147.32 Aligned_cols=147 Identities=21% Similarity=0.319 Sum_probs=98.6
Q ss_pred CeeecccccccccCCcccCCCCCCcEEEecCcccccc-CccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEc
Q 002125 661 TSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREV-PKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEI 739 (963)
Q Consensus 661 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l 739 (963)
+.++.+++. ++.+|..+. ++|++|+|++|.++.+ |..+.++++|+.|+|++|.. ..+|...+ ..+++|+.|++
T Consensus 22 ~~v~c~~~~-l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~--~~l~~L~~L~L 95 (229)
T 3e6j_A 22 TTVDCRSKR-HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVF--DSLTQLTVLDL 95 (229)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTT--TTCTTCCEEEC
T ss_pred CEeEccCCC-cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhc--ccCCCcCEEEC
Confidence 344444433 334444332 4566666666666544 34455666666666666533 34443321 12667777777
Q ss_pred cCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCc-cccCCCCCCEEEeccCC
Q 002125 740 IDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPE-SLNQLSSLEYLQLHLRS 813 (963)
Q Consensus 740 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~~~ 813 (963)
++|.+.+..+..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+|+.+|. .+..+++|+.|+|++|.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 777766666666788889999999999999999888999999999999999998874 47778888888877654
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=3.6e-14 Score=158.00 Aligned_cols=196 Identities=17% Similarity=0.214 Sum_probs=153.9
Q ss_pred cEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCc-cccCCC
Q 002125 580 KKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPS-SLCMFK 658 (963)
Q Consensus 580 ~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~-~~~~l~ 658 (963)
+.++.++ +.+..+|..+ .++|++|+|++|.+ +.+|. .|.+++
T Consensus 12 ~~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~N~i----------------------------------~~i~~~~f~~l~ 54 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDL--PRNAIELRFVLTKL----------------------------------RVIQKGAFSGFG 54 (350)
T ss_dssp TEEEEES-TTCCSCCTTC--CTTCSEEEEESCCC----------------------------------SEECTTSSTTCT
T ss_pred CEEEecC-CCCCccCcCc--CCCCCEEEccCCcC----------------------------------CCcCHHHHcCCC
Confidence 4566665 4567888776 36899999999753 35665 478899
Q ss_pred CCCeeecccccccccCCc-ccCCCCCCcE-EEecCccccccC-ccccCCCCCcEEEccCCCCCCCCCc-ccccccCCCCC
Q 002125 659 SLTSLEIIDCQNFMMLPY-ELGNLKALEM-LIVDGTAIREVP-KSLNQLALLFRLKLKNCSELDGISS-SIFSLCMFKSL 734 (963)
Q Consensus 659 ~L~~L~L~~~~~~~~~p~-~~~~l~~L~~-L~L~~n~l~~lp-~~~~~l~~L~~L~L~~~~~l~~lp~-~~~~l~~l~~L 734 (963)
+|++|+|++|.+.+.+|. .|.++++|.+ +.+++|+++.+| ..+..+++|+.|++++|.. ..+|. .+.. ..++
T Consensus 55 ~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~---~~~l 130 (350)
T 4ay9_X 55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIH---SLQK 130 (350)
T ss_dssp TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCC---BSSC
T ss_pred CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccc-ccCCchhhcc---cchh
Confidence 999999999998887764 6789988775 667789999885 5689999999999999955 44443 3322 5577
Q ss_pred cEEEccCCCCCCcCc-cccCCCC-CccEEEcCCCCCcccCcccCCCCCCCEEECcC-CCCcccCc-cccCCCCCCEEEec
Q 002125 735 TSLEIIDCQNFMILP-DELGNLK-ALETLIIDGTAMREVPESLGQLSSVKNLVLTN-NNLKRLPE-SLNQLSSLEYLQLH 810 (963)
Q Consensus 735 ~~L~l~~~~~~~~~p-~~l~~l~-~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~L~ 810 (963)
..|++.++.....+| ..+..+. .|+.|+|++|.++.+|.......+|+.|++++ |.++.||. .+.++++|+.|+|+
T Consensus 131 ~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred hhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 889998776555555 4566654 69999999999999998887888999999985 68999995 47999999999999
Q ss_pred cCCCCC
Q 002125 811 LRSPRK 816 (963)
Q Consensus 811 ~~~~~~ 816 (963)
+|++..
T Consensus 211 ~N~l~~ 216 (350)
T 4ay9_X 211 RTRIHS 216 (350)
T ss_dssp TSCCCC
T ss_pred CCCcCc
Confidence 876543
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=4.2e-15 Score=158.15 Aligned_cols=130 Identities=28% Similarity=0.305 Sum_probs=64.3
Q ss_pred ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCC
Q 002125 654 LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKS 733 (963)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~ 733 (963)
+..+++|++|++++|.+.+..| +.++++|++|++++|.++.+|.... ++|+.|++++|.. ..++ .+ ..+++
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l-~~~~-~l---~~l~~ 129 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNEL-RDTD-SL---IHLKN 129 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCC-SBSG-GG---TTCTT
T ss_pred HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCcc-CCCh-hh---cCccc
Confidence 4445666666666655443322 5556666666666666655544222 5555555555532 2222 12 22445
Q ss_pred CcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccC
Q 002125 734 LTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLP 795 (963)
Q Consensus 734 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 795 (963)
|+.|++++|.+.+. + .+..+++|+.|++++|.++.+ ..+..+++|+.|+|++|.++..|
T Consensus 130 L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 130 LEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred ccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 55555555544332 2 344455555555555555544 34455555555555555544443
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=3.7e-14 Score=146.54 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=123.5
Q ss_pred cCCCcCCccccCCCCCCeeecccccccccCC-cccCCCCCCcEEEecCccccccCc-cccCCCCCcEEEccCCCCCCCCC
Q 002125 645 SSLQSLPSSLCMFKSLTSLEIIDCQNFMMLP-YELGNLKALEMLIVDGTAIREVPK-SLNQLALLFRLKLKNCSELDGIS 722 (963)
Q Consensus 645 ~~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp 722 (963)
+.++.+|..+. +.+++|+|++|.+.+..| ..+.++++|++|+|++|.++.++. .+.++++|+.|+|++|...+..+
T Consensus 21 n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 21 QKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred CCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH
Confidence 45667888664 568999999999887755 458899999999999999998876 69999999999999996654444
Q ss_pred cccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCc
Q 002125 723 SSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 723 ~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~ 792 (963)
..+.. +++|++|++++|.+.+..|..+.++++|+.|+|++|.++.+ |..|..+++|+.|+|++|.+.
T Consensus 99 ~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 99 KMFKG---LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GGGTT---CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred hHhcC---CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 44544 89999999999999998899999999999999999999987 778999999999999999886
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=2.4e-14 Score=146.63 Aligned_cols=137 Identities=24% Similarity=0.401 Sum_probs=73.4
Q ss_pred CCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCccc
Q 002125 647 LQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSSI 725 (963)
Q Consensus 647 l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~ 725 (963)
+..+|..+ .++|++|++++|.+.+..+..++++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n---------- 86 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN---------- 86 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----------
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC----------
Confidence 33455443 35677777777666555555566666666666666666655543 355555555555555
Q ss_pred ccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcc-cCCCCCCCEEECcCCCCcccCcc-ccCCCC
Q 002125 726 FSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPES-LGQLSSVKNLVLTNNNLKRLPES-LNQLSS 803 (963)
Q Consensus 726 ~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~ 803 (963)
.+.+..+..+.++++|+.|++++|.++.+|.. +..+++|+.|+|++|.++.+|.. +..+++
T Consensus 87 -----------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 87 -----------------QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp -----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred -----------------cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 33333333344445555555555555544433 44555555555555555554433 445555
Q ss_pred CCEEEeccC
Q 002125 804 LEYLQLHLR 812 (963)
Q Consensus 804 L~~L~L~~~ 812 (963)
|+.|++++|
T Consensus 150 L~~L~l~~N 158 (208)
T 2o6s_A 150 LQYIWLHDN 158 (208)
T ss_dssp CCEEECCSC
T ss_pred ccEEEecCC
Confidence 555555543
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=6.5e-14 Score=144.64 Aligned_cols=140 Identities=21% Similarity=0.366 Sum_probs=109.1
Q ss_pred cEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcC
Q 002125 685 EMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIID 764 (963)
Q Consensus 685 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~ 764 (963)
+.++++++.++.+|..+. ++|+.|++++|......+..+.. +++|+.|++++|.+.+..|..|.++++|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~---l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSP---YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTT---CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhC---CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 356666667777776543 56777777777443322223333 7788888888888888888899999999999999
Q ss_pred CCCCcccCcc-cCCCCCCCEEECcCCCCcccC-ccccCCCCCCEEEeccCC-----------CCCCceecCCcchhhh
Q 002125 765 GTAMREVPES-LGQLSSVKNLVLTNNNLKRLP-ESLNQLSSLEYLQLHLRS-----------PRKLTSLNLSVNLRNY 829 (963)
Q Consensus 765 ~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~-----------~~~L~~L~l~~n~~~~ 829 (963)
+|.++.+|.. |..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|. +++|+.|+|++|...|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999999876 689999999999999999885 678999999999998765 3456777777776644
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=6.6e-14 Score=145.65 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=123.2
Q ss_pred CCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcc
Q 002125 646 SLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSS 724 (963)
Q Consensus 646 ~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~ 724 (963)
.+..+|..+. ++|++|+|++|.+.+..|..+.++++|++|+|++|.++.+|.. +..+++|+.|+|++|.. ..+|..
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~ 106 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-TVLPSA 106 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC-CccChh
Confidence 3557787664 8999999999999998899999999999999999999999865 68999999999999954 455544
Q ss_pred -cccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCcc
Q 002125 725 -IFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLKR 793 (963)
Q Consensus 725 -~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~ 793 (963)
+.. +++|+.|++++|.+. .+|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|.+..
T Consensus 107 ~~~~---l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 107 VFDR---LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTT---CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred HhCc---chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 344 899999999999876 678889999999999999999998885 58999999999999998874
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=3.4e-14 Score=151.16 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=130.7
Q ss_pred CcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCccccc
Q 002125 648 QSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFS 727 (963)
Q Consensus 648 ~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~ 727 (963)
..++ .+..+++|++|++++|.+. .+| .+..+++|++|++++|.++.+|. +.++++|+.|++++|. +..+|...
T Consensus 32 ~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~-- 104 (263)
T 1xeu_A 32 TDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIP-- 104 (263)
T ss_dssp TSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCC--
T ss_pred cccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccc--
Confidence 3445 3667899999999999754 566 78899999999999999999887 9999999999999994 45565432
Q ss_pred ccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCccccCCCCCCEE
Q 002125 728 LCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPESLNQLSSLEYL 807 (963)
Q Consensus 728 l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 807 (963)
.++|+.|++++|.+.+. + .+..+++|+.|++++|+++.+| .++.+++|+.|+|++|.++.+ ..+..+++|+.|
T Consensus 105 ---~~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L 177 (263)
T 1xeu_A 105 ---SACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWI 177 (263)
T ss_dssp ---CSSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEE
T ss_pred ---cCcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEE
Confidence 27999999999987763 3 5899999999999999999987 789999999999999999988 578899999999
Q ss_pred EeccCCCC
Q 002125 808 QLHLRSPR 815 (963)
Q Consensus 808 ~L~~~~~~ 815 (963)
++++|.+.
T Consensus 178 ~l~~N~~~ 185 (263)
T 1xeu_A 178 DLTGQKCV 185 (263)
T ss_dssp EEEEEEEE
T ss_pred eCCCCccc
Confidence 99886554
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=4.9e-14 Score=157.57 Aligned_cols=134 Identities=18% Similarity=0.159 Sum_probs=72.1
Q ss_pred CCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCc-cccCCCCCcEEEccCCCCCCCCCcccccccCCCCC
Q 002125 656 MFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPK-SLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSL 734 (963)
Q Consensus 656 ~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L 734 (963)
++++|++|+|++|.+.+..|..+.++++|++|+|++|.++.+|. .+.++++|+.|+|++|......|..+.. +++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~---l~~L 138 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED---MAQL 138 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT---CTTC
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC---cccC
Confidence 35555555555555554444555555555555555555555543 2455555555555555433332333333 5556
Q ss_pred cEEEccCCCCCCcCcccc---CCCCCccEEEcCCCCCcccCc-ccCCCCC--CCEEECcCCCCc
Q 002125 735 TSLEIIDCQNFMILPDEL---GNLKALETLIIDGTAMREVPE-SLGQLSS--VKNLVLTNNNLK 792 (963)
Q Consensus 735 ~~L~l~~~~~~~~~p~~l---~~l~~L~~L~L~~n~l~~lp~-~l~~l~~--L~~L~Ls~n~l~ 792 (963)
+.|+|++|.+....+..+ ..+++|+.|+|++|.++.+|. .+..++. |+.|+|++|.+.
T Consensus 139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 666666555544333333 456677777777777766653 3455554 366777777654
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=4.5e-14 Score=139.25 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=103.2
Q ss_pred CCCCCeeeccccccc-ccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCc
Q 002125 657 FKSLTSLEIIDCQNF-MMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLT 735 (963)
Q Consensus 657 l~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~ 735 (963)
.++|++|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|...+.+|..+.. +++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK---LPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH---CTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh---CCCCC
Confidence 477888888888876 67787778888888888888888877 66778888888888888665556655544 77888
Q ss_pred EEEccCCCCCCcC-ccccCCCCCccEEEcCCCCCcccCc----ccCCCCCCCEEECcCCCCcccCcc
Q 002125 736 SLEIIDCQNFMIL-PDELGNLKALETLIIDGTAMREVPE----SLGQLSSVKNLVLTNNNLKRLPES 797 (963)
Q Consensus 736 ~L~l~~~~~~~~~-p~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~Ls~n~l~~lp~~ 797 (963)
.|++++|.+.+.. +..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+..+|..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 8888887765532 2567777888888888888777776 677778888888888877777753
No 131
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=1.7e-12 Score=146.42 Aligned_cols=273 Identities=16% Similarity=0.069 Sum_probs=171.6
Q ss_pred CCCcccchhhHHHHHHhHhc--CCCCeEEEEEEccCCCChhhHHHHHHHHHhcc--------CCceEEEEecchhhccC-
Q 002125 196 NKDLVGVEWRIKEIESLLCT--GFAGVYILGIWGIGGIGKTTIADAVFNKISRH--------FEGSYFAQNVREAEETG- 264 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~~~~~- 264 (963)
++.++||+++++++.+++.. .....+.+.|+|++|+|||+||+.+++.+... ....+|+. . ....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~---~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-C---REVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-H---HHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-C---ccCCC
Confidence 37899999999999988863 23445689999999999999999999876443 22344443 2 2223
Q ss_pred CHHHHHHHHHHhhhcCCCC---C----CHHHHHHHHcCCceEEEEcCCCCHHH---HHH-HHHhccCCCCCceEEEEeCC
Q 002125 265 GIKDLQKELLSKLLNDRNV---W----NIESQLNRLARKKFLIVFDDVTHPRQ---IES-LIRRLDRLASGSRVIITTRD 333 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~~~~~---~----~~~~l~~~L~~k~~LlVLDdv~~~~~---~~~-l~~~l~~~~~gs~IivTTR~ 333 (963)
....+..+++..+.+.... . ..+.+.+.+..++.+|||||++.... .+. +...+... .+..||+||+.
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 5566777777776433221 1 13456666777666999999976543 122 22222222 67889999987
Q ss_pred chhhhcC------CcceEEEeccCCHHHHHHHHHHhhc---CCCCCCCcHHHHHHHHHHHhc---CCch-hHHHhhhhc-
Q 002125 334 KQVLKNC------RARQIFRMKELEDADAHKLFCQCAF---GGDHPDASHIELTDKAIKYAQ---GVPL-ALKVLGHHL- 399 (963)
Q Consensus 334 ~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---g~PL-al~~l~~~L- 399 (963)
....... .....+++++++.++..+++...+- ...... .+..+.+++.++ |.|. |+..+-...
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 5321111 1123899999999999999998752 222222 355778888888 8886 333332221
Q ss_pred -----CCCCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCChhhHHHHHhhhcccC-ccChhHHHHHHhhcCCC------h
Q 002125 400 -----CGRSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLE-GEHRDEVTSFFDASGFQ------A 467 (963)
Q Consensus 400 -----~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-~~~~~~l~~~~~~~~~~------~ 467 (963)
...+.+.+..+++... ...+..++..|++.++..+..++.... +...+....+....|.. .
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 323 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRF 323 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHH
Confidence 1246677777766542 245667788999999988887776111 11111222333332311 2
Q ss_pred hhhHHhhhcccCceee
Q 002125 468 KIELSVLEGKSLITCF 483 (963)
Q Consensus 468 ~~~l~~L~~~sLi~~~ 483 (963)
..++..|.++++++..
T Consensus 324 ~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 324 SDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 4567889999999764
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=5.9e-15 Score=179.66 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=93.9
Q ss_pred ccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCCCcCCccccCCCCCCeeeccccccc
Q 002125 592 SISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSLQSLPSSLCMFKSLTSLEIIDCQNF 671 (963)
Q Consensus 592 ~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~~~~~l~~L~~L~L~~~~~~ 671 (963)
..|..+..+++|+.|+|++|.+ ..+|..+.++++|++|+|++|.+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l----------------------------------~~l~~~~~~l~~L~~L~Ls~N~l~ 260 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQI----------------------------------FNISANIFKYDFLTRLYLNGNSLT 260 (727)
T ss_dssp -------CCCCCCEEECTTSCC----------------------------------SCCCGGGGGCCSCSCCBCTTSCCS
T ss_pred cChhhhccCCCCcEEECCCCCC----------------------------------CCCChhhcCCCCCCEEEeeCCcCc
Confidence 4456677777777887777642 245555666777777777777665
Q ss_pred ccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccc
Q 002125 672 MMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDE 751 (963)
Q Consensus 672 ~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~ 751 (963)
.+|..+++|++|++|+|++|.|+.+|.++++|++|+.|+|++| .++.+|..+.. +++|+.|+|++|.+.+.+|..
T Consensus 261 -~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~---l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 261 -ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGN---LCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp -CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTS---CTTCCCEECTTSCCCSHHHHH
T ss_pred -ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChhhhc---CCCccEEeCCCCccCCCChHH
Confidence 6777777777777777777777777777777777777777777 44567766554 777777777777777777766
Q ss_pred cCCCCC-ccEEEcCCCCCc-ccCcccCCCCCCCEEECcCC
Q 002125 752 LGNLKA-LETLIIDGTAMR-EVPESLGQLSSVKNLVLTNN 789 (963)
Q Consensus 752 l~~l~~-L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n 789 (963)
+..+.. +..|+|++|.++ .+| ..|..|++++|
T Consensus 336 ~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 336 LTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred HhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 544321 223567777665 333 34556666665
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.4e-13 Score=135.74 Aligned_cols=130 Identities=23% Similarity=0.265 Sum_probs=115.1
Q ss_pred CCCCCcEEEecCcccc--ccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCC
Q 002125 680 NLKALEMLIVDGTAIR--EVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKA 757 (963)
Q Consensus 680 ~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~ 757 (963)
..++|++|++++|.++ .+|..+..+++|+.|++++|.. ..+ ..+. .+++|+.|++++|.+.+.+|..+.++++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~-~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV-SNLP---KLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCC-SSCC---CCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CCh-hhhc---cCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 3478999999999999 9999899999999999999964 444 4444 4899999999999998888888888999
Q ss_pred ccEEEcCCCCCcccC--cccCCCCCCCEEECcCCCCcccCc----cccCCCCCCEEEeccCCC
Q 002125 758 LETLIIDGTAMREVP--ESLGQLSSVKNLVLTNNNLKRLPE----SLNQLSSLEYLQLHLRSP 814 (963)
Q Consensus 758 L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~~~~ 814 (963)
|+.|++++|.++.+| ..+..+++|+.|+|++|.++.+|. .+..+++|+.|+++.|..
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 999999999999987 789999999999999999999987 689999999999988544
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=1.5e-13 Score=132.40 Aligned_cols=125 Identities=21% Similarity=0.252 Sum_probs=77.1
Q ss_pred CCCCeeeccccccc-ccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcE
Q 002125 658 KSLTSLEIIDCQNF-MMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTS 736 (963)
Q Consensus 658 ~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~ 736 (963)
++|+.|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+.+ +++|+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~---------------------------l~~L~~ 68 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPK---------------------------LNKLKK 68 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCC---------------------------CTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhc---------------------------CCCCCE
Confidence 45666666666554 45555555555555555555555444 33444 455555
Q ss_pred EEccCCCCCCcCccccCCCCCccEEEcCCCCCcccC--cccCCCCCCCEEECcCCCCcccCc----cccCCCCCCEEEec
Q 002125 737 LEIIDCQNFMILPDELGNLKALETLIIDGTAMREVP--ESLGQLSSVKNLVLTNNNLKRLPE----SLNQLSSLEYLQLH 810 (963)
Q Consensus 737 L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~ 810 (963)
|++++|.+.+.+|..+..+++|+.|++++|.++.+| ..++.+++|+.|++++|.++.+|. .+..+++|+.|+++
T Consensus 69 L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555555545555555667777777777776654 667777777777777777777765 46777777777664
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=3.4e-12 Score=143.99 Aligned_cols=279 Identities=15% Similarity=0.117 Sum_probs=167.8
Q ss_pred ccCCCcccchhhHHHHHHhHhcC--CCCeEEEEEEccCCCChhhHHHHHHHHHhccCC---ceEEEEecchhhccCCHHH
Q 002125 194 SYNKDLVGVEWRIKEIESLLCTG--FAGVYILGIWGIGGIGKTTIADAVFNKISRHFE---GSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~~~~~~~~ 268 (963)
..+..|+||+++++++.+++... ....+.+.|+|++|+||||||+.+++.+...+. ..+|+. . ........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~---~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-T---RQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-H---HHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-C---CCCCCHHH
Confidence 34578999999999999998742 345678999999999999999999998766542 344443 1 22234455
Q ss_pred HHHHHHHhhhcCCCC--CCH----HHHHHHHc--CCceEEEEcCCCCHH------HHHHHHHhccC-CCCCceEEEEeCC
Q 002125 269 LQKELLSKLLNDRNV--WNI----ESQLNRLA--RKKFLIVFDDVTHPR------QIESLIRRLDR-LASGSRVIITTRD 333 (963)
Q Consensus 269 l~~~ll~~l~~~~~~--~~~----~~l~~~L~--~k~~LlVLDdv~~~~------~~~~l~~~l~~-~~~gs~IivTTR~ 333 (963)
+...++..+...... ... +.+.+.+. +++.+||||+++... .+..+...... ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 556665555332111 122 23444444 458999999986543 34444443322 2345677888886
Q ss_pred chhhhcCC-------cceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhc---CCchhHHHhhh-hc---
Q 002125 334 KQVLKNCR-------ARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQ---GVPLALKVLGH-HL--- 399 (963)
Q Consensus 334 ~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---g~PLal~~l~~-~L--- 399 (963)
........ ....+++++++.++..+++...+........-..+..+.+++.++ |.|..+..+.. ..
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 64332221 125899999999999999987642111111223456777888888 99984433222 11
Q ss_pred --C---CCCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCChhhHHHHHhhhcccC-cc---ChhHH----HHHHhhcCCC
Q 002125 400 --C---GRSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLE-GE---HRDEV----TSFFDASGFQ 466 (963)
Q Consensus 400 --~---~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-~~---~~~~l----~~~~~~~~~~ 466 (963)
. ..+.+.+..++.... ...+.-.+..+++.++.++..++...+ +. ....+ ..+....|..
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 0 124555555554432 245666788999999998888885432 22 12222 2222222222
Q ss_pred ------hhhhHHhhhcccCceee
Q 002125 467 ------AKIELSVLEGKSLITCF 483 (963)
Q Consensus 467 ------~~~~l~~L~~~sLi~~~ 483 (963)
...+++.|.+.++|...
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 24568889999998764
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=2.4e-13 Score=130.98 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=71.6
Q ss_pred cccccCcCC-CcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccc-cCccccCCCCCcEEEccCCC
Q 002125 639 LVLEKCSSL-QSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIRE-VPKSLNQLALLFRLKLKNCS 716 (963)
Q Consensus 639 l~l~~~~~l-~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~L~~~~ 716 (963)
+++.+|.-- ..+|..+..+++|++|++++|.+.+. ..++++++|++|++++|.++. +|..+..+++|+.|++++|.
T Consensus 22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~ 99 (149)
T 2je0_A 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99 (149)
T ss_dssp EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC
T ss_pred EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc
Confidence 444554322 37888889999999999999987665 688999999999999999987 77767778888888888874
Q ss_pred CCCCCC--cccccccCCCCCcEEEccCCCCC
Q 002125 717 ELDGIS--SSIFSLCMFKSLTSLEIIDCQNF 745 (963)
Q Consensus 717 ~l~~lp--~~~~~l~~l~~L~~L~l~~~~~~ 745 (963)
. ..+| ..+.. +++|++|++++|.+.
T Consensus 100 i-~~~~~~~~~~~---l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 100 I-KDLSTIEPLKK---LENLKSLDLFNCEVT 126 (149)
T ss_dssp C-CSHHHHGGGGG---CTTCCEEECTTCGGG
T ss_pred C-CChHHHHHHhh---CCCCCEEeCcCCccc
Confidence 3 3322 22222 444555555444433
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.40 E-value=1.3e-14 Score=174.14 Aligned_cols=173 Identities=17% Similarity=0.092 Sum_probs=117.3
Q ss_pred CCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCcccc--ccCccccCCCCCcEEEccCCCCCCCCCccccc
Q 002125 650 LPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIR--EVPKSLNQLALLFRLKLKNCSELDGISSSIFS 727 (963)
Q Consensus 650 lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~ 727 (963)
.+..+..+++|+.|+++++ ....+|..+..+++|++|++++|.++ .++..+..+++|+.|+++++.....++.....
T Consensus 262 ~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340 (592)
T ss_dssp SSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHh
Confidence 3445666788888888774 35567777788888899999888865 23334678888888888844222222222222
Q ss_pred ccCCCCCcEEEccC----------CCCCCc--CccccCCCCCccEEEcCCCCCc-ccCcccCC-CCCCCEEECc----CC
Q 002125 728 LCMFKSLTSLEIID----------CQNFMI--LPDELGNLKALETLIIDGTAMR-EVPESLGQ-LSSVKNLVLT----NN 789 (963)
Q Consensus 728 l~~l~~L~~L~l~~----------~~~~~~--~p~~l~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~Ls----~n 789 (963)
+++|++|++++ |...+. ++.....+++|++|+++.|.++ ..+..+.. +++|+.|+|+ .|
T Consensus 341 ---~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 341 ---CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp ---CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred ---CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 78899999984 443321 2333456889999999888887 23344443 7899999996 56
Q ss_pred CCcccC------ccccCCCCCCEEEeccC--------------CCCCCceecCCcch
Q 002125 790 NLKRLP------ESLNQLSSLEYLQLHLR--------------SPRKLTSLNLSVNL 826 (963)
Q Consensus 790 ~l~~lp------~~l~~l~~L~~L~L~~~--------------~~~~L~~L~l~~n~ 826 (963)
.++..| ..+.++++|+.|+|+.+ .|++|+.|+++.|.
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 777654 33677999999999531 27788888887763
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=6.7e-14 Score=170.35 Aligned_cols=180 Identities=18% Similarity=0.152 Sum_probs=119.4
Q ss_pred cCCCccccCCCCcEEeecCCCCccccccccCCCCCccEEeCcCCccccccCCCCccccCCCCccccccccccccccCcCC
Q 002125 568 ELPSSIECLSNLKKLYIVDCSKLESISSSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCSSL 647 (963)
Q Consensus 568 ~lp~~~~~L~~L~~L~L~~~~~~~~lp~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~~l~~l~~L~l~l~~~~~l 647 (963)
..|..+..+++|+.|+|++|. +..+|..++++++|++|+|++|.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l---------------------------------- 259 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSL---------------------------------- 259 (727)
T ss_dssp -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCC----------------------------------
T ss_pred cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcC----------------------------------
Confidence 346788999999999999966 558998899999999999999853
Q ss_pred CcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCccccc
Q 002125 648 QSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFS 727 (963)
Q Consensus 648 ~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~ 727 (963)
..+|..+++|++|++|+|++|.+. .+|..+++|++|++|+|++|.|+.+|..|++|++|+.|+|++|...+.+|..+..
T Consensus 260 ~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 260 TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred cccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 367888999999999999999977 7899999999999999999999999999999999999999999887777776643
Q ss_pred ccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCC-----Cccc----CcccCCCCCCCEEECcCCCC
Q 002125 728 LCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTA-----MREV----PESLGQLSSVKNLVLTNNNL 791 (963)
Q Consensus 728 l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~-----l~~l----p~~l~~l~~L~~L~Ls~n~l 791 (963)
+. ..+..|++++|.+.+.+|. .|+.|+++.|. +..+ +..+..+..+....+++|-+
T Consensus 339 ~~--~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 339 KS--VTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp HH--HHHHHHHHHHCCCCCCCCC------C-----------------------------------------CC
T ss_pred cc--hhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 11 1123467889988888775 45566676661 1122 22344455555666666654
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=6e-15 Score=176.99 Aligned_cols=266 Identities=17% Similarity=0.152 Sum_probs=137.2
Q ss_pred ceeeeEEecCCc------cCCCccccCCCCcEEeecCCCCccc----cccccCCCCCccEEeCcCCc--cc----c----
Q 002125 556 VYTLELVKVGIK------ELPSSIECLSNLKKLYIVDCSKLES----ISSSIFKLKSLQSIEISNCS--IL----K---- 615 (963)
Q Consensus 556 l~~L~~l~~~~~------~lp~~~~~L~~L~~L~L~~~~~~~~----lp~~~~~L~~L~~L~Ls~n~--~l----~---- 615 (963)
+++|+.|++... .++..+.++++|++|++++|...+. ++.....+++|++|+|++|. .. .
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 345555555432 1344445788888888888763322 33333467788888888875 10 0
Q ss_pred ccCCCCccccCCCCcccc-------ccccc-cc-------------------cccCcCCCc-----------CCccccCC
Q 002125 616 RFLEIPSCNIDGGIGIER-------LASCK-LV-------------------LEKCSSLQS-----------LPSSLCMF 657 (963)
Q Consensus 616 ~~~~l~~~~l~~~~~l~~-------l~~L~-l~-------------------l~~~~~l~~-----------lP~~~~~l 657 (963)
..+.+..+.+.+|..+.. +..|+ +. +.+|++++. +|..+..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 125555666666633221 11111 11 122333222 22222345
Q ss_pred CCCCeeeccccccccc-CCcccCCCCCCcEEEecCcccc--ccCccccCCCCCcEEEccCC--------CCCCCCCcccc
Q 002125 658 KSLTSLEIIDCQNFMM-LPYELGNLKALEMLIVDGTAIR--EVPKSLNQLALLFRLKLKNC--------SELDGISSSIF 726 (963)
Q Consensus 658 ~~L~~L~L~~~~~~~~-~p~~~~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~L~~~--------~~l~~lp~~~~ 726 (963)
++|++|++++|.+... ++..+.++++|++|++++| +. .++.....+++|+.|++.+| ..++. ..+.
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~--~~l~ 365 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE--QGLV 365 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH--HHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH--HHHH
Confidence 6777777777764322 2223556677777777766 33 22222334677777777432 11111 0010
Q ss_pred cc-cCCCCCcEEEccCCCCCCcCccccC-CCCCccEEEcC--C----CCCcccC------cccCCCCCCCEEECcCCCCc
Q 002125 727 SL-CMFKSLTSLEIIDCQNFMILPDELG-NLKALETLIID--G----TAMREVP------ESLGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 727 ~l-~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~L~--~----n~l~~lp------~~l~~l~~L~~L~Ls~n~l~ 792 (963)
.+ ..+++|+.|.+..+.+....+..+. .+++|+.|+++ + +.++..| ..+..+++|+.|+|++ +++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 01 1256777776655555443333333 46777777777 3 4555333 2245667777777766 444
Q ss_pred c-cCccccC-CCCCCEEEeccCC------------CCCCceecCCcc
Q 002125 793 R-LPESLNQ-LSSLEYLQLHLRS------------PRKLTSLNLSVN 825 (963)
Q Consensus 793 ~-lp~~l~~-l~~L~~L~L~~~~------------~~~L~~L~l~~n 825 (963)
. .+..+.. +++|+.|+|++|. |++|+.|++++|
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 2 2233333 6777777776543 455666655544
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.39 E-value=5.8e-14 Score=168.32 Aligned_cols=170 Identities=15% Similarity=0.033 Sum_probs=126.7
Q ss_pred ccCCCCCCeeeccccccc----ccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCccccccc
Q 002125 654 LCMFKSLTSLEIIDCQNF----MMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLC 729 (963)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~----~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~ 729 (963)
...+++|++|++++|... +.++..+.++++|++|++++|.+..+|..+.++++|+.|+++.+......+.....+.
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 445789999999988875 3455666788999999999999988888889999999999986543322222222334
Q ss_pred CCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCc--ccCcccCCCCCCCEEECcCCCCc--ccCccccCCCCCC
Q 002125 730 MFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMR--EVPESLGQLSSVKNLVLTNNNLK--RLPESLNQLSSLE 805 (963)
Q Consensus 730 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 805 (963)
.+++|+.|+++++ ....+|..+..+++|++|+|++|.++ .++..+..+++|+.|+|+ +++. .++.....+++|+
T Consensus 268 ~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 4789999999875 34557778888999999999999876 333457889999999998 4443 3555557889999
Q ss_pred EEEecc-----------C------------CCCCCceecCCcc
Q 002125 806 YLQLHL-----------R------------SPRKLTSLNLSVN 825 (963)
Q Consensus 806 ~L~L~~-----------~------------~~~~L~~L~l~~n 825 (963)
.|+|+. + .|++|+.|.+..|
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 999983 2 2677888887554
No 141
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=2.7e-11 Score=136.69 Aligned_cols=275 Identities=16% Similarity=0.154 Sum_probs=167.3
Q ss_pred cCCCcccchhhHHHHHHhHhcC--CCCeEEEEEEccCCCChhhHHHHHHHHHhccC-----C-ceEEEEecchhhccCCH
Q 002125 195 YNKDLVGVEWRIKEIESLLCTG--FAGVYILGIWGIGGIGKTTIADAVFNKISRHF-----E-GSYFAQNVREAEETGGI 266 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~-~~~~~~~~~~~~~~~~~ 266 (963)
.++.++||+++++++..++... ....+.+.|+|++|+||||+|+.+++.....+ . ..+++. .......
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 4578999999999999998532 34567899999999999999999998764432 2 233443 2233455
Q ss_pred HHHHHHHHHhhhcCCCC--CCH----HHHHHHH--cCCceEEEEcCCCCHHH----HHHH---HHhccCC--CCCceEEE
Q 002125 267 KDLQKELLSKLLNDRNV--WNI----ESQLNRL--ARKKFLIVFDDVTHPRQ----IESL---IRRLDRL--ASGSRVII 329 (963)
Q Consensus 267 ~~l~~~ll~~l~~~~~~--~~~----~~l~~~L--~~k~~LlVLDdv~~~~~----~~~l---~~~l~~~--~~gs~Iiv 329 (963)
..+...++..+...... ... +.+.+.+ .+++.+||||+++.... .+.+ ....... ..+..+|.
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 66677777776543222 122 3444455 34688999999986542 2333 2222211 45667888
Q ss_pred EeCCchhhhcC------C-cceEEEeccCCHHHHHHHHHHhh---cCCCCCCCcHHHHHHHHHHHhc---CCchhH-HHh
Q 002125 330 TTRDKQVLKNC------R-ARQIFRMKELEDADAHKLFCQCA---FGGDHPDASHIELTDKAIKYAQ---GVPLAL-KVL 395 (963)
Q Consensus 330 TTR~~~v~~~~------~-~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~---g~PLal-~~l 395 (963)
||+........ . ....+.+++++.++..+++...+ +...... .+..+.++++++ |.|..+ ..+
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 88765321111 1 12578999999999999998874 2222222 245677888888 999433 222
Q ss_pred hhhc---C--C---CCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCChhhHHHHHhhhcccCccC---hhHH----HHHH
Q 002125 396 GHHL---C--G---RSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLEGEH---RDEV----TSFF 460 (963)
Q Consensus 396 ~~~L---~--~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~---~~~l----~~~~ 460 (963)
.... . + .+.+.+..++.... ...+.-++..|++.++..+..++....+.. ...+ ..+.
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 2211 0 1 35566666665432 234566788999999998888875443332 2212 2222
Q ss_pred hhcCC------ChhhhHHhhhcccCceee
Q 002125 461 DASGF------QAKIELSVLEGKSLITCF 483 (963)
Q Consensus 461 ~~~~~------~~~~~l~~L~~~sLi~~~ 483 (963)
...|. .....++.|...|+++..
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 22222 124568888999998864
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=2.5e-12 Score=129.63 Aligned_cols=124 Identities=23% Similarity=0.301 Sum_probs=82.7
Q ss_pred cEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcc--cccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEE
Q 002125 685 EMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSS--IFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLI 762 (963)
Q Consensus 685 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~--~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 762 (963)
+.+++++|.++++|..+.. +|+.|++++|.. ..++.. +.. +++|++|++++|.+.+..|..|.++++|+.|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i-~~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNEL-GRISSDGLFGR---LPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCC-CSBCCSCSGGG---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcC-CccCCcccccc---CCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 4556666666666654432 666666666633 333321 333 66777777777777776677777778888888
Q ss_pred cCCCCCcccCc-ccCCCCCCCEEECcCCCCccc-CccccCCCCCCEEEeccCCC
Q 002125 763 IDGTAMREVPE-SLGQLSSVKNLVLTNNNLKRL-PESLNQLSSLEYLQLHLRSP 814 (963)
Q Consensus 763 L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~ 814 (963)
|++|.++.++. .|..+++|++|+|++|+++.+ |..+..+++|+.|+|++|..
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 88888776654 377788888888888888765 56677777777777776543
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=2.3e-12 Score=129.98 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=106.3
Q ss_pred CeeecccccccccCCcccCCCCCCcEEEecCccccccCcc--ccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEE
Q 002125 661 TSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS--LNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLE 738 (963)
Q Consensus 661 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~ 738 (963)
+++++++|.+ +.+|..+.. +|++|++++|.++.++.. +..+++|+.|+|++|...+..|..+.. +++|+.|+
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG---ASHIQELQ 84 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT---CTTCCEEE
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC---cccCCEEE
Confidence 6788888765 667765543 789999999999888764 889999999999998666555666655 88999999
Q ss_pred ccCCCCCCcCccccCCCCCccEEEcCCCCCccc-CcccCCCCCCCEEECcCCCCc
Q 002125 739 IIDCQNFMILPDELGNLKALETLIIDGTAMREV-PESLGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 739 l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~ 792 (963)
+++|.+.+..|..+.++++|++|+|++|+++.+ |..+..+++|+.|+|++|.++
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999888888899999999999999999965 778999999999999999887
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=5e-12 Score=127.44 Aligned_cols=121 Identities=21% Similarity=0.365 Sum_probs=78.4
Q ss_pred EEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCC
Q 002125 686 MLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDG 765 (963)
Q Consensus 686 ~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~ 765 (963)
.+++++|.++.+|..+. ++|+.|++++|. +..+|..+.. +++|+.|++++|.+.+..+..|.++++|++|+|++
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~---l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSN---YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGG---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhc---ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45555555555555432 456666666653 3355544433 66666666666666666666677777777777777
Q ss_pred CCCcccCc-ccCCCCCCCEEECcCCCCcccCcc-ccCCCCCCEEEeccC
Q 002125 766 TAMREVPE-SLGQLSSVKNLVLTNNNLKRLPES-LNQLSSLEYLQLHLR 812 (963)
Q Consensus 766 n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~ 812 (963)
|.++.+|. .|..+++|+.|+|++|.|+.+|.. +..+++|+.|+|++|
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 77776654 577778888888888888777753 666777776666654
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=4.5e-12 Score=127.76 Aligned_cols=126 Identities=25% Similarity=0.317 Sum_probs=106.5
Q ss_pred CeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEcc
Q 002125 661 TSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEII 740 (963)
Q Consensus 661 ~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~ 740 (963)
+++++++|. ++.+|..+. ++|++|++++|.++.+|..+.++++|+.|+|++|...+..+..+.. +++|+.|+++
T Consensus 13 ~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~---l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN---MTQLLTLILS 86 (193)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT---CTTCCEEECC
T ss_pred CEEEcCCCC-CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccC---CCCCCEEECC
Confidence 567887766 445676543 5799999999999999988999999999999998655444444554 8999999999
Q ss_pred CCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECcCCCCc
Q 002125 741 DCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 741 ~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 792 (963)
+|.+.+..|..|.++++|+.|+|++|.++.+|. .|..+++|+.|+|++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 999988888889999999999999999999987 4889999999999999876
No 146
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=7.6e-13 Score=131.48 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCCCCcEEEecCccccccCccccCC-CCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCc
Q 002125 680 NLKALEMLIVDGTAIREVPKSLNQL-ALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKAL 758 (963)
Q Consensus 680 ~l~~L~~L~L~~n~l~~lp~~~~~l-~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L 758 (963)
++.+|+.|++++|.++.+|. +..+ ++|+.|++++|... .+ ..+ ..+++|+.|++++|.+.+..+..+..+++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~l---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR-KL-DGF---PLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCC-EE-CCC---CCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCC-cc-ccc---ccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 34445555555555554433 2222 25555555555322 22 122 225566666666666554433444667777
Q ss_pred cEEEcCCCCCcccCc--ccCCCCCCCEEECcCCCCcccCcc----ccCCCCCCEEEecc
Q 002125 759 ETLIIDGTAMREVPE--SLGQLSSVKNLVLTNNNLKRLPES----LNQLSSLEYLQLHL 811 (963)
Q Consensus 759 ~~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L~~ 811 (963)
+.|++++|.++.+|. .+..+++|+.|+|++|.++.+|.. +..+++|+.|+++.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 777777777777776 677788888888888888777764 66777777666654
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=2.3e-14 Score=145.52 Aligned_cols=147 Identities=24% Similarity=0.231 Sum_probs=119.1
Q ss_pred cCCCCCCeeecccccccccCCc------ccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccc
Q 002125 655 CMFKSLTSLEIIDCQNFMMLPY------ELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSL 728 (963)
Q Consensus 655 ~~l~~L~~L~L~~~~~~~~~p~------~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l 728 (963)
.....++.++++++.+.+.+|. .+.++++|++|++++|.++.+| .+..+++|+.|++++|. +..+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~- 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAV- 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHH-
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhc-
Confidence 3456777778887777777765 7888999999999999999888 78889999999999885 4467776554
Q ss_pred cCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc--ccCCCCCCCEEECcCCCCcccC-c---------
Q 002125 729 CMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE--SLGQLSSVKNLVLTNNNLKRLP-E--------- 796 (963)
Q Consensus 729 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp-~--------- 796 (963)
+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++.+|. .+..+++|++|++++|.++..+ .
T Consensus 92 --~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 92 --ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp --HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred --CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 6789999999998766 45 57888999999999999998765 7899999999999999887543 2
Q ss_pred -cccCCCCCCEEE
Q 002125 797 -SLNQLSSLEYLQ 808 (963)
Q Consensus 797 -~l~~l~~L~~L~ 808 (963)
.+..+++|+.|+
T Consensus 168 ~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCSEEC
T ss_pred HHHHhCCCcEEEC
Confidence 267788888776
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.8e-11 Score=120.14 Aligned_cols=123 Identities=21% Similarity=0.366 Sum_probs=84.6
Q ss_pred cEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcc-cccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEc
Q 002125 685 EMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSS-IFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLII 763 (963)
Q Consensus 685 ~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L 763 (963)
+.+++++++++.+|..+ .++|+.|++++|... .+|.. +.. +++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQ-SLPHGVFDK---LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCC-CCCTTTTTT---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCccc-EeCHHHhcC---cccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 45666666666666443 356777777766433 33332 233 677777777777766655566778888888888
Q ss_pred CCCCCcccCcc-cCCCCCCCEEECcCCCCcccCcc-ccCCCCCCEEEeccCC
Q 002125 764 DGTAMREVPES-LGQLSSVKNLVLTNNNLKRLPES-LNQLSSLEYLQLHLRS 813 (963)
Q Consensus 764 ~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~~ 813 (963)
++|.++.+|.. +..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 88888877654 67788888888888888888755 4677788887777654
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.27 E-value=9.4e-11 Score=122.77 Aligned_cols=187 Identities=16% Similarity=0.133 Sum_probs=122.0
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCce---------------------
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGS--------------------- 251 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~--------------------- 251 (963)
|.....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+.+++.+...+...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 4445679999999999999997543 235789999999999999999998765433211
Q ss_pred EEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEE
Q 002125 252 YFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTH--PRQIESLIRRLDRLASGSRVII 329 (963)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~Iiv 329 (963)
..+. . . .........+++..+... ...+++.+||+||++. .+.++.+...+.....+.++|+
T Consensus 98 ~~~~-~---~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~ 161 (250)
T 1njg_A 98 IEID-A---A-SRTKVEDTRDLLDNVQYA-----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 161 (250)
T ss_dssp EEEE-T---T-CGGGHHHHHHHHHSCCCS-----------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEE
T ss_pred EEec-C---c-ccccHHHHHHHHHHhhhc-----------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEE
Confidence 1110 0 0 000111111222221110 0135689999999964 5567777776665567888999
Q ss_pred EeCCchhhhc--CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhh
Q 002125 330 TTRDKQVLKN--CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHH 398 (963)
Q Consensus 330 TTR~~~v~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~ 398 (963)
||+....... ......+++++++.+|..+++...+..... .-..+..+.+++.++|+|..+..+...
T Consensus 162 ~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 162 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9876532211 122468999999999999999887643221 122456789999999999988766543
No 150
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.27 E-value=1.1e-10 Score=131.83 Aligned_cols=278 Identities=14% Similarity=0.097 Sum_probs=167.6
Q ss_pred cCCCcccchhhHHHHHHhHhc----CCCCeEEEEEEccCCCChhhHHHHHHHHHhccC-CceEEEEecchhhccCCHHHH
Q 002125 195 YNKDLVGVEWRIKEIESLLCT----GFAGVYILGIWGIGGIGKTTIADAVFNKISRHF-EGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l 269 (963)
.++.++||+++++++..++.. +....+.+.|+|++|+||||||+.+++...... ...+++. .........+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 347899999999999998874 222334899999999999999999998876542 2344443 2233445666
Q ss_pred HHHHHHhhhcCCCC--CCHH----HHHHHHc--CCceEEEEcCCCC--HHHHHHHHHhccCCC----CCceEEEEeCCch
Q 002125 270 QKELLSKLLNDRNV--WNIE----SQLNRLA--RKKFLIVFDDVTH--PRQIESLIRRLDRLA----SGSRVIITTRDKQ 335 (963)
Q Consensus 270 ~~~ll~~l~~~~~~--~~~~----~l~~~L~--~k~~LlVLDdv~~--~~~~~~l~~~l~~~~----~gs~IivTTR~~~ 335 (963)
...++..+...... .... .+.+.+. +++.+||||+++. ...+..+...+.... .+..||++|+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 77777666443221 1222 3333332 5688999999965 344556655443221 4677888887764
Q ss_pred hhhcCC-------cceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHh---------cCCchhHHHhhhhc
Q 002125 336 VLKNCR-------ARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYA---------QGVPLALKVLGHHL 399 (963)
Q Consensus 336 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~g~PLal~~l~~~L 399 (963)
...... ....+.+++++.++..+++...+........-..+..+.+++.+ +|.|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 332221 12379999999999999998875321111122346778899999 78875544332211
Q ss_pred C------C---CCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCChhhHHHHHhhhccc---Cc--cChhHHHHHHh----
Q 002125 400 C------G---RSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFL---EG--EHRDEVTSFFD---- 461 (963)
Q Consensus 400 ~------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~---~~--~~~~~l~~~~~---- 461 (963)
. + .+.+....+....... .+...+..|+.+++.++..++.+. .+ .....+.+.+.
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 0 1 2334444444333211 122335678888888888787654 22 23333333222
Q ss_pred hcCCC------hhhhHHhhhcccCceee
Q 002125 462 ASGFQ------AKIELSVLEGKSLITCF 483 (963)
Q Consensus 462 ~~~~~------~~~~l~~L~~~sLi~~~ 483 (963)
..+.. ....++.|..+++|...
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 22211 23568899999999874
No 151
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=4.6e-12 Score=125.80 Aligned_cols=134 Identities=18% Similarity=0.155 Sum_probs=111.6
Q ss_pred ccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCccc-ccccCCC
Q 002125 654 LCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSI-FSLCMFK 732 (963)
Q Consensus 654 ~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~-~~l~~l~ 732 (963)
+.++++|++|++++|.+. .+|......++|++|++++|.++.+ ..+..+++|+.|++++|.. ..+|..+ .. ++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~---l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQA---LP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHH---CT
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhc---CC
Confidence 455889999999999876 4564333344999999999999988 6789999999999999954 4566554 44 89
Q ss_pred CCcEEEccCCCCCCcCcc--ccCCCCCccEEEcCCCCCcccCcc----cCCCCCCCEEECcCCCCccc
Q 002125 733 SLTSLEIIDCQNFMILPD--ELGNLKALETLIIDGTAMREVPES----LGQLSSVKNLVLTNNNLKRL 794 (963)
Q Consensus 733 ~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~L~~n~l~~lp~~----l~~l~~L~~L~Ls~n~l~~l 794 (963)
+|+.|++++|.+ +.+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+...
T Consensus 89 ~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 89 DLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp TCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 999999999987 44665 788999999999999999999985 89999999999999987643
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=5.9e-13 Score=159.61 Aligned_cols=151 Identities=19% Similarity=0.174 Sum_probs=98.8
Q ss_pred cCCCCCCeeeccccc--cc-ccCCcccCCCCCCcEEEecCc-cccccCccccCCCCCcEEEccCCCC------CCCCCcc
Q 002125 655 CMFKSLTSLEIIDCQ--NF-MMLPYELGNLKALEMLIVDGT-AIREVPKSLNQLALLFRLKLKNCSE------LDGISSS 724 (963)
Q Consensus 655 ~~l~~L~~L~L~~~~--~~-~~~p~~~~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~L~~~~~------l~~lp~~ 724 (963)
..+++|++|++++|. .. ..++..+.++++|++|++++| .+..+|..+.++++|+.|+++.+.. ...++..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 356788888888875 11 112222345678888888877 5556777777888888888776532 1112223
Q ss_pred cccccCCCCCcEE-EccCCCCCCcCccccCCCCCccEEEcCCCCCcc--cCcccCCCCCCCEEECcCCCCc--ccCcccc
Q 002125 725 IFSLCMFKSLTSL-EIIDCQNFMILPDELGNLKALETLIIDGTAMRE--VPESLGQLSSVKNLVLTNNNLK--RLPESLN 799 (963)
Q Consensus 725 ~~~l~~l~~L~~L-~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~ 799 (963)
+ .++++|+.| .+.+.. ...++..+..+++|+.|+|++|.++. ++..+..+++|+.|+|++| ++ .++....
T Consensus 261 l---~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 261 L---SGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp H---HTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred H---hcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 3 337778877 333322 23455555678899999999998762 4445678899999999988 43 2333345
Q ss_pred CCCCCCEEEec
Q 002125 800 QLSSLEYLQLH 810 (963)
Q Consensus 800 ~l~~L~~L~L~ 810 (963)
.+++|+.|+|.
T Consensus 336 ~~~~L~~L~L~ 346 (594)
T 2p1m_B 336 TCKDLRELRVF 346 (594)
T ss_dssp HCTTCCEEEEE
T ss_pred hCCCCCEEEEe
Confidence 68999999984
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=1.1e-10 Score=115.92 Aligned_cols=128 Identities=16% Similarity=0.256 Sum_probs=91.6
Q ss_pred CCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcc-cccccCCCCCcEE
Q 002125 660 LTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSS-IFSLCMFKSLTSL 737 (963)
Q Consensus 660 L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~-~~~l~~l~~L~~L 737 (963)
.+.++++++.+ ..+|..+ .++|+.|++++|.++.+|.. +..+++|+.|++++|.. ..+|.. +.. +++|+.|
T Consensus 9 ~~~l~~~~~~l-~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~---l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGL-TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDK---LTKLTIL 81 (177)
T ss_dssp TTEEECCSSCC-SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTT---CTTCCEE
T ss_pred CCEEEecCCCC-ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccC---CCccCEE
Confidence 35566666543 3344333 25677777777777766654 56777777777777744 344433 333 7788888
Q ss_pred EccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcc-cCCCCCCCEEECcCCCCccc
Q 002125 738 EIIDCQNFMILPDELGNLKALETLIIDGTAMREVPES-LGQLSSVKNLVLTNNNLKRL 794 (963)
Q Consensus 738 ~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~l 794 (963)
++++|.+.+..+..+..+++|+.|++++|.++.+|.. +..+++|+.|+|++|.+...
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 8888887776666788899999999999999988876 57899999999999987743
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=1.7e-13 Score=139.07 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=114.0
Q ss_pred CCCcCCccccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCccc
Q 002125 646 SLQSLPSSLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSI 725 (963)
Q Consensus 646 ~l~~lP~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~ 725 (963)
.++.+|..+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++.+|..+..+++|+.|++++|.. ..+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l-~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC-CCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC-CcCC-cc
Confidence 455677788899999999999998766 77 88999999999999999999999888889999999999954 4566 34
Q ss_pred ccccCCCCCcEEEccCCCCCCcCc-cccCCCCCccEEEcCCCCCcccCcc-----------cCCCCCCCEEECcCCCCc
Q 002125 726 FSLCMFKSLTSLEIIDCQNFMILP-DELGNLKALETLIIDGTAMREVPES-----------LGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 726 ~~l~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~L~~n~l~~lp~~-----------l~~l~~L~~L~Ls~n~l~ 792 (963)
.. +++|+.|++++|.+....+ ..+..+++|++|++++|.+...+.. +..+++|+.|+ +|.++
T Consensus 112 ~~---l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 112 EK---LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HH---HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cc---CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 44 8899999999998765332 4789999999999999999755322 78899999997 55443
No 155
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.15 E-value=5.5e-10 Score=115.11 Aligned_cols=187 Identities=14% Similarity=0.119 Sum_probs=118.1
Q ss_pred ccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEEEecchhhccCCHHHHH
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQ 270 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~ 270 (963)
.|.....++|+++.++++.+++.... .+.+.|+|++|+|||++|+.+++.+... +...+...+. ....+...+.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 86 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA---SDERGIDVVR 86 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET---TCTTCHHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc---ccccChHHHH
Confidence 34455789999999999999997543 2338999999999999999999876443 2222221111 1122222222
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCchhhh-c-CCcceEE
Q 002125 271 KELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQVLK-N-CRARQIF 346 (963)
Q Consensus 271 ~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v~~-~-~~~~~~~ 346 (963)
.. +........ ...+++.+||+||++.. ...+.+...+.....+.++|+||+...... . ......+
T Consensus 87 ~~-~~~~~~~~~---------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 87 HK-IKEFARTAP---------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp HH-HHHHHTSCC---------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HH-HHHHhcccC---------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 21 111111100 01256889999999653 445566655555567788999988653211 1 1223488
Q ss_pred EeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 347 RMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 347 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
++.+++.++..+++...+...... -..+..+.+++.++|.|..+..+
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999998876321111 22356788899999999865443
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=1.6e-10 Score=114.23 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=45.2
Q ss_pred CCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcc-cCCCCCCCEEECcCCCCcccCcc-ccCCCCCCEEEec
Q 002125 733 SLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPES-LGQLSSVKNLVLTNNNLKRLPES-LNQLSSLEYLQLH 810 (963)
Q Consensus 733 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 810 (963)
+|+.|++++|.+.+..|..|.++++|+.|+|++|+++.+|.. |..+++|+.|+|++|+|+.+|.. +..+++|+.|+|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 444444444444444455555555666666666666655543 35566666666666666665543 5556666666555
Q ss_pred cCC
Q 002125 811 LRS 813 (963)
Q Consensus 811 ~~~ 813 (963)
+|.
T Consensus 114 ~N~ 116 (174)
T 2r9u_A 114 NNP 116 (174)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.4e-10 Score=112.43 Aligned_cols=80 Identities=25% Similarity=0.390 Sum_probs=41.5
Q ss_pred CCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCcc-cCCCCCCCEEECcCCCCcccCcc-ccCCCCCCEEEec
Q 002125 733 SLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPES-LGQLSSVKNLVLTNNNLKRLPES-LNQLSSLEYLQLH 810 (963)
Q Consensus 733 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 810 (963)
+|+.|++++|.+.+..|..|.++++|+.|+|++|+++.+|.. |..+++|+.|+|++|+|+.+|.. +..+++|+.|+|+
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 444444444444444444455555555555555555555443 35555555555555555555532 4555555555555
Q ss_pred cC
Q 002125 811 LR 812 (963)
Q Consensus 811 ~~ 812 (963)
+|
T Consensus 111 ~N 112 (170)
T 3g39_A 111 NN 112 (170)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=2.2e-10 Score=126.11 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=43.5
Q ss_pred CCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCC-EEECcCCCCcccC-ccccCCCCCCEE
Q 002125 731 FKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVK-NLVLTNNNLKRLP-ESLNQLSSLEYL 807 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~-~L~Ls~n~l~~lp-~~l~~l~~L~~L 807 (963)
+++|+.|++++|++....+..|.++++|+.|+|.+| ++.++. .|.++++|+ .|+|.+ +++.|+ ..|.+|++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455666666655544444445556666666666555 554443 355666666 666655 555554 345566666666
Q ss_pred Eec
Q 002125 808 QLH 810 (963)
Q Consensus 808 ~L~ 810 (963)
+++
T Consensus 303 ~l~ 305 (329)
T 3sb4_A 303 LAT 305 (329)
T ss_dssp EEC
T ss_pred EeC
Confidence 653
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=7.2e-10 Score=109.46 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=95.4
Q ss_pred CcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEc
Q 002125 684 LEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLII 763 (963)
Q Consensus 684 L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L 763 (963)
-+.+++++|.++.+|..+. ++|+.|+|++|...+..|..+.. +++|+.|+|++|.+.+..+..|.++++|+.|+|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDH---LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcC---CcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 3689999999999998774 89999999999765555666655 899999999999988866667899999999999
Q ss_pred CCCCCcccCcc-cCCCCCCCEEECcCCCCcccCccc
Q 002125 764 DGTAMREVPES-LGQLSSVKNLVLTNNNLKRLPESL 798 (963)
Q Consensus 764 ~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l 798 (963)
++|+++.+|.. +..+++|+.|+|++|.+...|..+
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 99999999876 999999999999999998776533
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=8.8e-10 Score=108.40 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=93.8
Q ss_pred CcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEc
Q 002125 684 LEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLII 763 (963)
Q Consensus 684 L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L 763 (963)
.+.+++++|.++.+|..+ .++|+.|+|++|...+..|..+.. +++|+.|++++|.+.+..+..|.++++|+.|+|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~---l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDR---LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTT---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcC---cccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 578999999999999876 489999999999665555666655 899999999999998877777899999999999
Q ss_pred CCCCCcccCcc-cCCCCCCCEEECcCCCCcccC
Q 002125 764 DGTAMREVPES-LGQLSSVKNLVLTNNNLKRLP 795 (963)
Q Consensus 764 ~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp 795 (963)
++|+++.+|.. |..+++|+.|+|++|.++..+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999999874 899999999999999887544
No 161
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=2e-09 Score=118.03 Aligned_cols=185 Identities=18% Similarity=0.237 Sum_probs=115.9
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-CCc-eEEEEecchhhccCCHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-FEG-SYFAQNVREAEETGGIKDLQ 270 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~l~ 270 (963)
|.....++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.+... +.. .+.+. .+...+...+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~i- 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGIDVV- 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHHHH-
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChHHH-
Confidence 4445779999999999999997543 2238999999999999999999876432 222 22222 1111222222
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHH-cCCceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEEEeCCchhh-hc-CCcceE
Q 002125 271 KELLSKLLNDRNVWNIESQLNRL-ARKKFLIVFDDVTH--PRQIESLIRRLDRLASGSRVIITTRDKQVL-KN-CRARQI 345 (963)
Q Consensus 271 ~~ll~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~-~~~~~~ 345 (963)
++++..+..... .+ .+++.++|+||++. ....+.+...+.....++++|+||+...-. .. ......
T Consensus 90 ~~~~~~~~~~~~---------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 90 RNQIKHFAQKKL---------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HTHHHHHHHBCC---------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHHHHHhccc---------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 222222210000 01 34588999999975 344555555554445678888888764321 11 122358
Q ss_pred EEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh-HHHh
Q 002125 346 FRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA-LKVL 395 (963)
Q Consensus 346 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa-l~~l 395 (963)
+++.+++.++..+++...+..... .-..+.+..+++.++|.|.. +..+
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDV--KYTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999999887632111 12235678899999999954 4444
No 162
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=9.3e-10 Score=121.01 Aligned_cols=233 Identities=11% Similarity=0.103 Sum_probs=121.4
Q ss_pred eEEecCCccCCC-cccc--------CCCCcEEeecCCCCccccc-cccCCCCCccEEeCcCCccccccCCCCccccCCCC
Q 002125 560 ELVKVGIKELPS-SIEC--------LSNLKKLYIVDCSKLESIS-SSIFKLKSLQSIEISNCSILKRFLEIPSCNIDGGI 629 (963)
Q Consensus 560 ~~l~~~~~~lp~-~~~~--------L~~L~~L~L~~~~~~~~lp-~~~~~L~~L~~L~Ls~n~~l~~~~~l~~~~l~~~~ 629 (963)
+++.+....+|. .|.+ +++|+.|+|.+ .+..++ ..|.++++|+.|++++|... .++...+.+|.
T Consensus 75 ~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~----~i~~~aF~~~~ 148 (329)
T 3sb4_A 75 KFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAP----NLLPEALADSV 148 (329)
T ss_dssp CCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCC----EECTTSSCTTT
T ss_pred ccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCcc----ccchhhhcCCC
Confidence 333344445554 5556 78888888876 344454 45777888888888877542 23444555555
Q ss_pred ccccccccc-cccccCcCCCcCCccccCCCCCC-eeecccccccccCCcc----cCCCCCCcEEEecCccccccCccc-c
Q 002125 630 GIERLASCK-LVLEKCSSLQSLPSSLCMFKSLT-SLEIIDCQNFMMLPYE----LGNLKALEMLIVDGTAIREVPKSL-N 702 (963)
Q Consensus 630 ~l~~l~~L~-l~l~~~~~l~~lP~~~~~l~~L~-~L~L~~~~~~~~~p~~----~~~l~~L~~L~L~~n~l~~lp~~~-~ 702 (963)
.+..+..-. ........+. +..+.++.+|+ .+.+.... .+|.. --...++..+.+.++-...-...+ .
T Consensus 149 ~l~~l~~~~~~~~~~~~~i~--~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~ 223 (329)
T 3sb4_A 149 TAIFIPLGSSDAYRFKNRWE--HFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRD 223 (329)
T ss_dssp CEEEECTTCTHHHHTSTTTT--TSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHH
T ss_pred ceEEecCcchhhhhcccccc--ccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHH
Confidence 444322100 0000000000 01122233343 23332211 11111 112334455555443111100111 1
Q ss_pred CCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCcc-EEEcCCCCCcccC-cccCCCCC
Q 002125 703 QLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALE-TLIIDGTAMREVP-ESLGQLSS 780 (963)
Q Consensus 703 ~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~-~L~L~~n~l~~lp-~~l~~l~~ 780 (963)
.+++|+.|+|++|. +..+|...+ .++++|+.|++.+| +...-+..|.++++|+ .+++.+ .++.++ ..|.++++
T Consensus 224 ~~~~L~~l~L~~n~-i~~I~~~aF--~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 224 YMPNLVSLDISKTN-ATTIPDFTF--AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp HCTTCCEEECTTBC-CCEECTTTT--TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred hcCCCeEEECCCCC-cceecHhhh--hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 25666666666553 344444332 23666666766665 3333445577777887 888877 666665 56888888
Q ss_pred CCEEECcCCCCcccCc-cccCCCCCCEEE
Q 002125 781 VKNLVLTNNNLKRLPE-SLNQLSSLEYLQ 808 (963)
Q Consensus 781 L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 808 (963)
|+.|++++|+++.|+. .|.++++|+.|+
T Consensus 299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 8888888888888874 577888887775
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=8.8e-09 Score=113.00 Aligned_cols=186 Identities=20% Similarity=0.161 Sum_probs=116.3
Q ss_pred ccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC-Cc-eEEEEecchhhccCCHHHH
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF-EG-SYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~l 269 (963)
.|.....++|++..++.+..++..+. .+.+.|+|++|+|||++|+.+++.+.... .. .+.+. .........+...
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 96 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASDERGINVIREK 96 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTCHHHHHTTHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-ccccCchHHHHHH
Confidence 34556789999999999999997643 33489999999999999999998764332 11 22222 1110000111111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCchhh-hcC-CcceE
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQVL-KNC-RARQI 345 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v~-~~~-~~~~~ 345 (963)
...+... .. ...+++.++|+||++.. +..+.+...+.....++++|+||...... ... .....
T Consensus 97 ~~~~~~~----~~---------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 97 VKEFART----KP---------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp HHHHHHS----CC---------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred HHHHHhh----CC---------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 1111100 00 01256889999999753 45666666655556778899888765321 111 12347
Q ss_pred EEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 346 FRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 346 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
+++.+++.++..+++...+..... .-..+..+.+++.++|.|..+..+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHH
Confidence 899999999999999887643221 123466788999999999865543
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=3.2e-08 Score=111.27 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=67.5
Q ss_pred CCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccCcc-ccCCCCCcEEEccCCCCCCCCCcccccccCCCCCc
Q 002125 657 FKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVPKS-LNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLT 735 (963)
Q Consensus 657 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~ 735 (963)
..+|+.+.+..+ ....-...|.++++|+.+++..+ ++.++.. |.+ .+|+.+.+.++ +..++...+ .++++|+
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF--~~c~~L~ 274 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAF--YYCPELA 274 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT--CCEECTTTT--TTCTTCC
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC--ccEEChhHh--hCCCCCC
Confidence 345555555432 22222334555555555555542 4444333 333 45555555332 233322221 1245555
Q ss_pred EEEccCCCCC-----CcCccccCCCCCccEEEcCCCCCcccC-cccCCCCCCCEEECcCCCCcccC-ccccCCCCCCEEE
Q 002125 736 SLEIIDCQNF-----MILPDELGNLKALETLIIDGTAMREVP-ESLGQLSSVKNLVLTNNNLKRLP-ESLNQLSSLEYLQ 808 (963)
Q Consensus 736 ~L~l~~~~~~-----~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~ 808 (963)
.+.+.++... ..-+..|.++++|+.+.|. +.++.++ ..|.++++|+.|.|.. +++.|+ ..|.++ +|+.|+
T Consensus 275 ~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~ 351 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVK 351 (401)
T ss_dssp EEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEE
T ss_pred EEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEE
Confidence 5555544332 2233445556666666665 3355443 2355556666666633 355554 335555 566666
Q ss_pred eccC
Q 002125 809 LHLR 812 (963)
Q Consensus 809 L~~~ 812 (963)
+..|
T Consensus 352 l~~n 355 (401)
T 4fdw_A 352 VEGT 355 (401)
T ss_dssp ECCS
T ss_pred EcCC
Confidence 5543
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=8.9e-11 Score=130.93 Aligned_cols=158 Identities=17% Similarity=0.139 Sum_probs=105.9
Q ss_pred CCCCCeeecccccccccCCc----ccC-CCCCCcEEEecCccccc--cCccccCCCCCcEEEccCCCCCCCCCcccccc-
Q 002125 657 FKSLTSLEIIDCQNFMMLPY----ELG-NLKALEMLIVDGTAIRE--VPKSLNQLALLFRLKLKNCSELDGISSSIFSL- 728 (963)
Q Consensus 657 l~~L~~L~L~~~~~~~~~p~----~~~-~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l- 728 (963)
+++|++|+|++|.+...... .+. +.++|++|+|++|.++. +..-...+++|+.|+|++|.....-...+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46788888888886543222 222 23688889998888862 22223345678888998885432222222111
Q ss_pred -cCCCCCcEEEccCCCCCC----cCccccCCCCCccEEEcCCCCCc-----ccCcccCCCCCCCEEECcCCCCcc-----
Q 002125 729 -CMFKSLTSLEIIDCQNFM----ILPDELGNLKALETLIIDGTAMR-----EVPESLGQLSSVKNLVLTNNNLKR----- 793 (963)
Q Consensus 729 -~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~----- 793 (963)
...++|++|++++|.+.. .++..+..+++|++|+|++|.++ .++..+...++|+.|+|++|.|+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 125678889998887643 24455567888999999998887 345667777889999999988873
Q ss_pred cCccccCCCCCCEEEeccCCC
Q 002125 794 LPESLNQLSSLEYLQLHLRSP 814 (963)
Q Consensus 794 lp~~l~~l~~L~~L~L~~~~~ 814 (963)
++..+...++|+.|+|++|.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHhCCCCCEEeccCCCC
Confidence 445566778888888887654
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=5.6e-08 Score=109.33 Aligned_cols=232 Identities=13% Similarity=0.166 Sum_probs=150.3
Q ss_pred ccccCCCcccccceeeeEEecC--CccCCC-ccccCCCCcEEeecCCCCccccc-cccCCCCCccEEeCcCCccccccCC
Q 002125 544 DLVNFPSVTSCHVYTLELVKVG--IKELPS-SIECLSNLKKLYIVDCSKLESIS-SSIFKLKSLQSIEISNCSILKRFLE 619 (963)
Q Consensus 544 ~~~~~~~f~~~~l~~L~~l~~~--~~~lp~-~~~~L~~L~~L~L~~~~~~~~lp-~~~~~L~~L~~L~Ls~n~~l~~~~~ 619 (963)
..+...+|..+ +|+.+.+. ...++. .|.+ .+|+.+.+.+ .+..++ ..|.++++|+.++|++|... .
T Consensus 125 ~~I~~~aF~~~---~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~----~ 194 (401)
T 4fdw_A 125 KSIPKDAFRNS---QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKIT----K 194 (401)
T ss_dssp CEECTTTTTTC---CCSEEECCTTCCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCS----E
T ss_pred CEehHhhcccC---CccEEEeCCCccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCcce----E
Confidence 34556677333 35544443 234433 4555 3688888875 344454 56778888999988876432 2
Q ss_pred CCccccCCCCccccccccccccccCcCCCcCCc-cccCCCCCCeeecccccccccCCcccCCCCCCcEEEecCccccccC
Q 002125 620 IPSCNIDGGIGIERLASCKLVLEKCSSLQSLPS-SLCMFKSLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGTAIREVP 698 (963)
Q Consensus 620 l~~~~l~~~~~l~~l~~L~l~l~~~~~l~~lP~-~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~lp 698 (963)
++...+. |.++ ..+.+. .+++.++. .|.++++|+.+++..+ ....-...|.+ .+|+.+.+ .+.++.++
T Consensus 195 I~~~aF~-~~~L---~~l~lp----~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~ 263 (401)
T 4fdw_A 195 LPASTFV-YAGI---EEVLLP----VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIA 263 (401)
T ss_dssp ECTTTTT-TCCC---SEEECC----TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEEC
T ss_pred echhhEe-eccc---CEEEeC----CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEC
Confidence 3333333 2222 222221 23445544 3677899999999874 33333345666 78999999 45677775
Q ss_pred c-cccCCCCCcEEEccCCCCC----CCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccC-
Q 002125 699 K-SLNQLALLFRLKLKNCSEL----DGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVP- 772 (963)
Q Consensus 699 ~-~~~~l~~L~~L~L~~~~~l----~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp- 772 (963)
. .|.++++|+.+.+.++... ..++... +.++++|+.+.+.+ +....-...|.++++|+.+.|..+ ++.++
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a--F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC--LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTT--TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHH--hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 5 5889999999999887432 1244333 23488999999984 444445567899999999999655 77765
Q ss_pred cccCCCCCCCEEECcCCCCcccCcc-ccCC
Q 002125 773 ESLGQLSSVKNLVLTNNNLKRLPES-LNQL 801 (963)
Q Consensus 773 ~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l 801 (963)
..|.++ +|+.|++.+|.+..++.. +.++
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 568888 999999999988877643 4444
No 167
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.85 E-value=1.9e-07 Score=102.18 Aligned_cols=262 Identities=13% Similarity=0.059 Sum_probs=148.4
Q ss_pred cccCCCcccchhhHHHHHHhHhc---CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT---GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
|.....++|++..++++..++.. .....+.+.|+|++|+|||++|+.+++.....| .++. ... ......+
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~---~~~~~~l 80 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPA---IEKPGDL 80 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTT---CCSHHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-ccc---cCChHHH
Confidence 44567899999999999888762 122345788999999999999999998764322 2222 111 1111111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHc---CCceEEEEcCCCCH--HHHHHHHHhccCC------------------CCCce
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRLA---RKKFLIVFDDVTHP--RQIESLIRRLDRL------------------ASGSR 326 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L~---~k~~LlVLDdv~~~--~~~~~l~~~l~~~------------------~~gs~ 326 (963)
...+. .++.+|+||+++.. ...+.+...+... .++.+
T Consensus 81 --------------------~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 81 --------------------AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp --------------------HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred --------------------HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11221 35679999999764 2334444332211 12456
Q ss_pred EEEEeCCchhh-hcC--CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhcCC--
Q 002125 327 VIITTRDKQVL-KNC--RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHLCG-- 401 (963)
Q Consensus 327 IivTTR~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L~~-- 401 (963)
+|.||...... ... .....+++.+++.+|..+++...+..... .-..+..+.++++++|.|..+..+...+..
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 77666644221 111 12358999999999999999887643222 223466889999999999877765443321
Q ss_pred -------CCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCChhhHHHHHhhhcccCc--cChhHHHHHHhhcCCChhhhHH
Q 002125 402 -------RSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLEG--EHRDEVTSFFDASGFQAKIELS 472 (963)
Q Consensus 402 -------~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~ 472 (963)
.+.+....++..+ ...+..+++.++..+..+.....+ .....+.+.+..........++
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~ 286 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHE 286 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTH
T ss_pred HHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 1333333333322 122456777777777766544332 2344444433211111122233
Q ss_pred h-hhcccCceeecCEEEEchhHHH
Q 002125 473 V-LEGKSLITCFYNYIRMHDLIRD 495 (963)
Q Consensus 473 ~-L~~~sLi~~~~~~~~mHdlv~~ 495 (963)
. +++.++++.......+-+...+
T Consensus 287 ~~~i~~~li~~~~~g~~~~~~~~~ 310 (324)
T 1hqc_A 287 PYLIRQGLLKRTPRGRVPTELAYR 310 (324)
T ss_dssp HHHHHTTSEEEETTEEEECHHHHH
T ss_pred HHHHHhcchhcCCccceecHHHHH
Confidence 3 6778888766544444444333
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=1.3e-08 Score=112.88 Aligned_cols=102 Identities=21% Similarity=0.185 Sum_probs=50.4
Q ss_pred eecccccccccCCcccCCCCCCcEEEecC-ccccccCc-cccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEcc
Q 002125 663 LEIIDCQNFMMLPYELGNLKALEMLIVDG-TAIREVPK-SLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEII 740 (963)
Q Consensus 663 L~L~~~~~~~~~p~~~~~l~~L~~L~L~~-n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~ 740 (963)
+++++++.+..+|. +..+++|++|+|++ |.++.+|. .|.+|++|+.|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N------------------------- 66 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS------------------------- 66 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-------------------------
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-------------------------
Confidence 45554423344555 55555666666654 55555542 3555555555555555
Q ss_pred CCCCCCcCccccCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCc
Q 002125 741 DCQNFMILPDELGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 741 ~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 792 (963)
.+.+..|..|.++++|+.|+|++|+|+.+|..+.....|+.|+|.+|.+.
T Consensus 67 --~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 67 --GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp --CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred --ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 44444444444555555555555555554443222222555555555544
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.75 E-value=4e-10 Score=125.62 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=36.6
Q ss_pred CCCCcEEEccCCCCCC----cCccccCCCCCccEEEcCCCCCc-----ccCcccCCCCCCCEEECcCCCCcc
Q 002125 731 FKSLTSLEIIDCQNFM----ILPDELGNLKALETLIIDGTAMR-----EVPESLGQLSSVKNLVLTNNNLKR 793 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~ 793 (963)
.++|++|+|++|.+.. .++..+..+++|+.|+|++|.++ .++..+...++|++|+|++|.|+.
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3445555555544322 12344555566777777777766 234445566777777777777764
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=2.4e-08 Score=110.65 Aligned_cols=102 Identities=24% Similarity=0.173 Sum_probs=77.2
Q ss_pred EEccCCCCCCCCCcccccccCCCCCcEEEccC-CCCCCcCccccCCCCCccEEEcCCCCCcccCc-ccCCCCCCCEEECc
Q 002125 710 LKLKNCSELDGISSSIFSLCMFKSLTSLEIID-CQNFMILPDELGNLKALETLIIDGTAMREVPE-SLGQLSSVKNLVLT 787 (963)
Q Consensus 710 L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~-~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls 787 (963)
++.++++.+..+|. +.. +++|+.|+|++ |.+.+..+..|+++++|+.|+|++|+|+.+|. .|..|++|+.|+|+
T Consensus 13 v~~~~~n~l~~ip~-l~~---~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPG---AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCCTTTTT-SCS---CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCCCccCC-CCC---CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34444434455565 443 66677777775 66666666789999999999999999998765 68999999999999
Q ss_pred CCCCcccCccccCCCCCCEEEeccCCCC
Q 002125 788 NNNLKRLPESLNQLSSLEYLQLHLRSPR 815 (963)
Q Consensus 788 ~n~l~~lp~~l~~l~~L~~L~L~~~~~~ 815 (963)
+|+|+.+|..+....+|+.|+|.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCcc
Confidence 9999999976543334999999887654
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.69 E-value=1.5e-07 Score=105.36 Aligned_cols=192 Identities=16% Similarity=0.138 Sum_probs=116.8
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKE 272 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 272 (963)
|.....++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+....... .. .. ..... ...
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~-~~------~~~~~-~~~ 81 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-AT-PC------GVCDN-CRE 81 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SS-CC------SSSHH-HHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CC-CC------cccHH-HHH
Confidence 4445679999999999999987542 235788999999999999999998764322100 00 00 00000 000
Q ss_pred HHHh-------hhcC--CCCCCHHHHHHHH-----cCCceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEEEeCCchh
Q 002125 273 LLSK-------LLND--RNVWNIESQLNRL-----ARKKFLIVFDDVTH--PRQIESLIRRLDRLASGSRVIITTRDKQV 336 (963)
Q Consensus 273 ll~~-------l~~~--~~~~~~~~l~~~L-----~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~v 336 (963)
+... +... .....+..+.+.+ .+++.++|+||++. ....+.+...+.....+..+|++|....-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 0000 0000 0112333344433 24678999999964 44566676666555567778877765432
Q ss_pred -hhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhh
Q 002125 337 -LKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLG 396 (963)
Q Consensus 337 -~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~ 396 (963)
... ......+++.+++.++..+++...+-.... .-..+....+++.++|.|..+..+.
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 122368999999999999999876522111 1223567889999999998776543
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.63 E-value=2.2e-07 Score=101.35 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=114.5
Q ss_pred ccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc-cCCc-eEEEEecchhhccCCHHHH
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR-HFEG-SYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~-~~~~~~~~~~~~~~~~~~l 269 (963)
.|....+++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.+.. .+.. .+.+. .........+...
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 88 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGIDVVRHK 88 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCTTTSSHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccChHHHHHH
Confidence 34455779999999999999887542 233899999999999999999987632 2211 12222 1111011111121
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHH-cCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCchh-hhc-CCcce
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRL-ARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQV-LKN-CRARQ 344 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~v-~~~-~~~~~ 344 (963)
...+..... + .+++.++|+|+++.. +..+.+...+.....+.++|+||....- ... .....
T Consensus 89 ~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 89 IKEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp HHHHHHSCC--------------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 111110000 1 256789999999653 4456666666655667888888866532 111 12235
Q ss_pred EEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHH
Q 002125 345 IFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
.+++.+++.++..+++...+-.... .-..+....+++.++|.+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCC--CBCHHHHHHHHHTTTTCHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 8999999999999999877643222 12345678888999999875443
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=5.5e-06 Score=91.64 Aligned_cols=195 Identities=12% Similarity=0.102 Sum_probs=113.5
Q ss_pred ccccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc--cCCceEEEEecchhhccCCHHHH
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR--HFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
.|.....++|++..++.+..++..+.. +.+.|+|++|+||||+|+.+++.+.. .+...+.-.+. +...+...+
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~---~~~~~~~~~ 106 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---SDERGISIV 106 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---SSCCCHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc---ccccchHHH
Confidence 355567899999999999999875432 23889999999999999999987542 22222221111 111222222
Q ss_pred HHHHHHhhhcCCCCCCHH-HHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCch-hhhcC-Ccce
Q 002125 270 QKELLSKLLNDRNVWNIE-SQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQ-VLKNC-RARQ 344 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~-~~~~ 344 (963)
. +............... .....-..++-+|++|+++.. .....+...+.......++|++|.... +.... ....
T Consensus 107 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 107 R-EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp T-THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred H-HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 2 1111111110000000 000011235579999998643 344555555444455677877775442 21111 1224
Q ss_pred EEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHH
Q 002125 345 IFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 345 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
.+++.+++.++..+.+...+..... .-..+..+.+++.++|.|..+..
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENV--KCDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHTSSCHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 7899999999999999887633221 12246688999999999876443
No 174
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.52 E-value=3.9e-07 Score=91.03 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=85.0
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-------CCceEEEEecchhhccCC
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-------FEGSYFAQNVREAEETGG 265 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-------f~~~~~~~~~~~~~~~~~ 265 (963)
+.....++||+++++++.+.+.. ...+.+.|+|++|+|||++|+.+++.+... ....+++ +.........
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 94 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL-DMGALVAGAK 94 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE-CHHHHHTTTC
T ss_pred hccccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe-eHHHHhccCC
Confidence 34457899999999999999865 334567899999999999999999876442 1222233 2211110001
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHH--cCCceEEEEcCCCCHH---------H-HHHHHHhccCCCCCceEEEEeCC
Q 002125 266 IKDLQKELLSKLLNDRNVWNIESQLNRL--ARKKFLIVFDDVTHPR---------Q-IESLIRRLDRLASGSRVIITTRD 333 (963)
Q Consensus 266 ~~~l~~~ll~~l~~~~~~~~~~~l~~~L--~~k~~LlVLDdv~~~~---------~-~~~l~~~l~~~~~gs~IivTTR~ 333 (963)
...-....+ ..+.+.+ .+++.+||+||++... . ...+..... ..+..+|.||..
T Consensus 95 ~~~~~~~~~------------~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~ 160 (195)
T 1jbk_A 95 YRGEFEERL------------KGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTL 160 (195)
T ss_dssp SHHHHHHHH------------HHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECH
T ss_pred ccccHHHHH------------HHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCH
Confidence 000000000 1111111 3568899999997542 1 222222222 234567777765
Q ss_pred chhhhc-------CCcceEEEeccCCHHHHHHHH
Q 002125 334 KQVLKN-------CRARQIFRMKELEDADAHKLF 360 (963)
Q Consensus 334 ~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf 360 (963)
...... ......+.+.+++.++..+++
T Consensus 161 ~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 161 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 432111 112236889999988877653
No 175
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=2e-08 Score=110.97 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=44.3
Q ss_pred CCCCcEEEccCCCCCCcCcccc---CCCCCccEEEcCCCCCcc-----cCcccCCCCCCCEEECcCCCCc
Q 002125 731 FKSLTSLEIIDCQNFMILPDEL---GNLKALETLIIDGTAMRE-----VPESLGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~~~p~~l---~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 792 (963)
+++|+.|++.+|.+....+..+ ..+++|++|+|+.|.++. ++..+.++++|+.|+|++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 6788888888777653322222 357788899998888873 4555567788999999988776
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.51 E-value=1.5e-06 Score=92.95 Aligned_cols=180 Identities=18% Similarity=0.202 Sum_probs=104.4
Q ss_pred cccCCCcccchhhHHHHHHhHhcC-----------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhh
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTG-----------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE 261 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 261 (963)
....+.++|+++.+++|.+.+... ....+.+.|+|++|+|||+||+.+++.....| +.+ ......
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v-~~~~~~ 88 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRV-VGSELV 88 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEE-EGGGGC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEE-ehHHHH
Confidence 344578999999999998887521 13445689999999999999999998754332 122 111111
Q ss_pred cc-CC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----------------HHHHHHHHhccC--C
Q 002125 262 ET-GG-IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------------RQIESLIRRLDR--L 321 (963)
Q Consensus 262 ~~-~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~--~ 321 (963)
.. .+ .......+ +......++.+|+||+++.. ..+..+...+.. .
T Consensus 89 ~~~~~~~~~~~~~~---------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 KKFIGEGASLVKDI---------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp CCSTTHHHHHHHHH---------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred HhccchHHHHHHHH---------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 11 00 11111111 11222356789999999653 123333333321 2
Q ss_pred CCCceEEEEeCCchhhh-----cCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCC-chhHHH
Q 002125 322 ASGSRVIITTRDKQVLK-----NCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGV-PLALKV 394 (963)
Q Consensus 322 ~~gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~ 394 (963)
..+..||.||....... .......+.++.++.++..+++...+........ .....+++.+.|. |-.++.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHHH
Confidence 34567788887553322 1123457999999999999999887643222211 1145666667663 434443
No 177
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.50 E-value=3.6e-06 Score=92.52 Aligned_cols=251 Identities=14% Similarity=0.119 Sum_probs=139.4
Q ss_pred cccCCCcccchhhHHHHHHhHhcC---CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTG---FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
|.....++|++..++++..++... ....+.|.|+|++|+|||++|+.+++.....| +.+. ... ......+
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~---~~~~~~~ 97 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APM---IEKSGDL 97 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGG---CCSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chh---ccchhHH
Confidence 445678999999999999888742 33445689999999999999999988754332 2222 111 1111111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCC------------------CCceEEE
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLA------------------SGSRVII 329 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~------------------~gs~Iiv 329 (963)
. ..+.. ..+..+|+||+++.. .....+...+.... ++.++|.
T Consensus 98 ~-~~~~~-----------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 98 A-AILTN-----------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp H-HHHHT-----------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred H-HHHHh-----------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 1 11111 235679999999753 33444444332211 1245666
Q ss_pred EeCCchhhh-c--CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHhhhhc------C
Q 002125 330 TTRDKQVLK-N--CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVLGHHL------C 400 (963)
Q Consensus 330 TTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l~~~L------~ 400 (963)
+|....... . -.....+++.+++.++..+++.+.+-... ..-..+..+.+++.+.|.|-.+..+...+ .
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~ 237 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVN 237 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHT
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhh
Confidence 665432211 1 12236899999999999999987763221 12234667788888999986555433221 0
Q ss_pred C---CCHHHHHHHHHHhhcCCChhHHHHHHHHhhCCChhhHHHHHhhhcccCcc--ChhHHHHHHhhcCCChhhhHH-hh
Q 002125 401 G---RSKEEWESAMRKLEVIPDKEIQEVLKISYDSLDDPQKNVFLDIACFLEGE--HRDEVTSFFDASGFQAKIELS-VL 474 (963)
Q Consensus 401 ~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~~~~l~-~L 474 (963)
+ .+.+....++.. +..+...++..++..+..++-. .+. ....+...+....-.....++ .|
T Consensus 238 ~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~~~l 304 (338)
T 3pfi_A 238 DEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYL 304 (338)
T ss_dssp TCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTHHHH
T ss_pred cCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHhHHH
Confidence 0 122222222222 2223344555556666666554 322 244444433221111233344 78
Q ss_pred hcccCceee
Q 002125 475 EGKSLITCF 483 (963)
Q Consensus 475 ~~~sLi~~~ 483 (963)
++.++|...
T Consensus 305 ~~~gli~~~ 313 (338)
T 3pfi_A 305 LANGYIERT 313 (338)
T ss_dssp HHTTSEEEE
T ss_pred HHcCceecC
Confidence 888988776
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.50 E-value=2e-07 Score=97.12 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=101.0
Q ss_pred cCCCcccch---hhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHH
Q 002125 195 YNKDLVGVE---WRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQK 271 (963)
Q Consensus 195 ~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 271 (963)
..++|+|.+ ..++.+..+...+ ..+.+.|+|++|+|||+||+.+++........+.++. ....... +.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~--~~---- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI--ST---- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS--CG----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH--HH----
Confidence 446788743 4556666666532 4567889999999999999999998765544455554 2111110 00
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH----HHHHHHHhccCC-CCCc-eEEEEeCCchh---------
Q 002125 272 ELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR----QIESLIRRLDRL-ASGS-RVIITTRDKQV--------- 336 (963)
Q Consensus 272 ~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----~~~~l~~~l~~~-~~gs-~IivTTR~~~v--------- 336 (963)
... +.+ .++.+||+||++... ..+.+...+... ..+. ++|+||+...-
T Consensus 97 ----~~~------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 97 ----ALL------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp ----GGG------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred ----HHH------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 000 011 346789999986431 122333221110 1222 47887764321
Q ss_pred hhcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 337 LKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 337 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
...+.....+++++++.++..+++...+..... .-..+..+.+++.++|.+..+..+
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHH
Confidence 111112268999999999999999887632111 123466778889999988665543
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.48 E-value=4.4e-08 Score=108.15 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=97.4
Q ss_pred ccccCCCCCCeeecccccc---------cccCCcccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCC
Q 002125 652 SSLCMFKSLTSLEIIDCQN---------FMMLPYELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGIS 722 (963)
Q Consensus 652 ~~~~~l~~L~~L~L~~~~~---------~~~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp 722 (963)
.++.++++|+.|.+.+... .+.++..+..+++|+.|+|++|.-..+|. + .+++|+.|+|..|.......
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHH
Confidence 3344567777777654321 11244455677888888888773224444 3 37888888888764322111
Q ss_pred cccccccCCCCCcEEEccCCCC--CC-----cCcccc--CCCCCccEEEcCCCCCcc-cCccc---CCCCCCCEEECcCC
Q 002125 723 SSIFSLCMFKSLTSLEIIDCQN--FM-----ILPDEL--GNLKALETLIIDGTAMRE-VPESL---GQLSSVKNLVLTNN 789 (963)
Q Consensus 723 ~~~~~l~~l~~L~~L~l~~~~~--~~-----~~p~~l--~~l~~L~~L~L~~n~l~~-lp~~l---~~l~~L~~L~Ls~n 789 (963)
..+. ...+++|+.|+|+.+.. .+ .+...+ ..+++|+.|+|++|.+.. .+..+ ..+++|+.|+|+.|
T Consensus 211 ~~l~-~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 211 EDIL-GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHH-HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHH-HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 1111 11378888888853211 11 111223 357999999999998862 22111 35789999999999
Q ss_pred CCcc-----cCccccCCCCCCEEEeccC
Q 002125 790 NLKR-----LPESLNQLSSLEYLQLHLR 812 (963)
Q Consensus 790 ~l~~-----lp~~l~~l~~L~~L~L~~~ 812 (963)
.++. ++..+..+++|+.|+|+.|
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 9884 5666677888888888763
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=1.1e-06 Score=102.27 Aligned_cols=192 Identities=15% Similarity=0.198 Sum_probs=107.4
Q ss_pred ccccCCCcccchhhHHHHHHhHhcC---------------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEe
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCTG---------------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 256 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 256 (963)
.|.....++|++..++++.+++... ....+.+.|+|++|+|||++|+.+++.+. ++ .+.+ +
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~i-n 109 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQ-N 109 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEE-C
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEE-e
Confidence 3445678999999999999998741 01346899999999999999999998762 21 1222 1
Q ss_pred cchhhccCCHHHHHHHHHHhhhcCCCC-CCHHHHHH--HHcCCceEEEEcCCCCH-----HHHHHHHHhccCCCCCceEE
Q 002125 257 VREAEETGGIKDLQKELLSKLLNDRNV-WNIESQLN--RLARKKFLIVFDDVTHP-----RQIESLIRRLDRLASGSRVI 328 (963)
Q Consensus 257 ~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~~~~l~~--~L~~k~~LlVLDdv~~~-----~~~~~l~~~l~~~~~gs~Ii 328 (963)
. +..... ......+......... ...+...+ ...+++.+||+|+++.. ..+..+...+.. .+..||
T Consensus 110 ~---s~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 110 A---SDVRSK-TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp T---TSCCCH-HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred C---CCcchH-HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEE
Confidence 1 111121 2222222221111111 00000000 12357889999999543 123334333321 334466
Q ss_pred EEeCCch---hhhcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch-hHHHh
Q 002125 329 ITTRDKQ---VLKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL-ALKVL 395 (963)
Q Consensus 329 vTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~l 395 (963)
+++.+.. +.........+++++++.++..+.+...+......- ..+....|++.++|.+- ++..+
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 6655432 222223346899999999999998877664322111 12347788999999554 44444
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.45 E-value=2.5e-06 Score=94.32 Aligned_cols=202 Identities=16% Similarity=0.168 Sum_probs=115.1
Q ss_pred hhhHHHHHHHHHHHhhhcccccccCCCcccchhhHHHHHHhHhc----------CCCCeEEEEEEccCCCChhhHHHHHH
Q 002125 172 PESKLVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLCT----------GFAGVYILGIWGIGGIGKTTIADAVF 241 (963)
Q Consensus 172 ~e~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~ 241 (963)
.+...++.+.+++..+. ++.....++|.+..+++|.+.+.. .....+.|.|+|++|+|||+||++++
T Consensus 62 ~~~~~~~~i~~~i~~~~---~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHG---PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp SCHHHHHHHHHHTBCCS---CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred CChHHHHHHHhhcccCC---CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 34556666666664432 344457799999999999887752 11335678999999999999999998
Q ss_pred HHHhccCCceEEEEecchhhcc-CC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-----------
Q 002125 242 NKISRHFEGSYFAQNVREAEET-GG-IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------- 308 (963)
Q Consensus 242 ~~~~~~f~~~~~~~~~~~~~~~-~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------- 308 (963)
+.....| +.+ +....... .+ .....+.++ ...-..++.+|+||+++..
T Consensus 139 ~~~~~~~---~~i-~~~~l~~~~~g~~~~~~~~~~---------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~ 199 (357)
T 3d8b_A 139 SQSGATF---FSI-SASSLTSKWVGEGEKMVRALF---------------AVARCQQPAVIFIDEIDSLLSQRGDGEHES 199 (357)
T ss_dssp HHTTCEE---EEE-EGGGGCCSSTTHHHHHHHHHH---------------HHHHHTCSEEEEEETHHHHTBC------CH
T ss_pred HHcCCeE---EEE-ehHHhhccccchHHHHHHHHH---------------HHHHhcCCeEEEEeCchhhhccCCCCcchH
Confidence 8753222 222 22221111 01 011111111 1112356789999998532
Q ss_pred --HHHHHHHHhccC----CCCCceEEEEeCCchhhh-c--CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHH
Q 002125 309 --RQIESLIRRLDR----LASGSRVIITTRDKQVLK-N--CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTD 379 (963)
Q Consensus 309 --~~~~~l~~~l~~----~~~gs~IivTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~ 379 (963)
.....++..+.. ...+..||.||.....+. . -.....+.+...+.++..+++...+-..... -..+..+
T Consensus 200 ~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~ 277 (357)
T 3d8b_A 200 SRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIE 277 (357)
T ss_dssp HHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHH
Confidence 123344433321 123455666775432211 0 1233578899999999999987766322111 1235577
Q ss_pred HHHHHhcC-CchhHHHhhh
Q 002125 380 KAIKYAQG-VPLALKVLGH 397 (963)
Q Consensus 380 ~i~~~~~g-~PLal~~l~~ 397 (963)
.+++.+.| .+-.+..+..
T Consensus 278 ~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 278 QIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHH
Confidence 88888888 4455555533
No 182
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.6e-06 Score=92.88 Aligned_cols=162 Identities=9% Similarity=0.072 Sum_probs=97.9
Q ss_pred CcccchhhHHHHHHhHhc--CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCC-------ceEEEEecchhhccCCHHH
Q 002125 198 DLVGVEWRIKEIESLLCT--GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFE-------GSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 198 ~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-------~~~~~~~~~~~~~~~~~~~ 268 (963)
.+.||++|+++|...|.. ..+..+.+.|+|++|+|||++|+.+++.+..... ..+++.. ........
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc----~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDA----LELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEET----TCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEec----cccCCHHH
Confidence 478999999999988773 2345678899999999999999999998754321 1233431 22234456
Q ss_pred HHHHHHHhhhcCCCC--CCHHHHHHHH------cCCceEEEEcCCCCH---HHHHHHHHhccCCCCCceEEEEeCCchh-
Q 002125 269 LQKELLSKLLNDRNV--WNIESQLNRL------ARKKFLIVFDDVTHP---RQIESLIRRLDRLASGSRVIITTRDKQV- 336 (963)
Q Consensus 269 l~~~ll~~l~~~~~~--~~~~~l~~~L------~~k~~LlVLDdv~~~---~~~~~l~~~l~~~~~gs~IivTTR~~~v- 336 (963)
+...++.++.+.... ...+.+.+.+ .+++++++||+++.. +.+-.+............||.++...+.
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 667777777554322 2333343332 356799999999764 2333333211111112233334433211
Q ss_pred --------hhcCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 337 --------LKNCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 337 --------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
...++ ...+.+.+++.+|-.+++.+++
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11221 2578999999999999998876
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.38 E-value=1.3e-06 Score=99.41 Aligned_cols=181 Identities=12% Similarity=0.135 Sum_probs=105.4
Q ss_pred CCCcc-cchhhH--HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCc--eEEEEecchhhccCCHHHHH
Q 002125 196 NKDLV-GVEWRI--KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEG--SYFAQNVREAEETGGIKDLQ 270 (963)
Q Consensus 196 ~~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 270 (963)
.+.|| |..... ..+......... ...+.|+|++|+||||||+.+++.+...++. .+++. . ..+.
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~---------~~~~ 172 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFL 172 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-H---------HHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H---------HHHH
Confidence 34566 655443 233443333222 6678999999999999999999987666533 33443 1 1122
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----HHHHHHHHhccC-CCCCceEEEEeCCch---------h
Q 002125 271 KELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----RQIESLIRRLDR-LASGSRVIITTRDKQ---------V 336 (963)
Q Consensus 271 ~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----~~~~~l~~~l~~-~~~gs~IivTTR~~~---------v 336 (963)
.++...+.. .....+.+.++.++-+|++||++.. ...+.+...+.. ...|..||+||.+.. +
T Consensus 173 ~~~~~~~~~----~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 173 NDLVDSMKE----GKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHHHHHHT----TCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHHHHHHc----ccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 333333322 1233455555546779999999532 223333333211 145778999988632 1
Q ss_pred hhcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 337 LKNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 337 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
...+....++.+++++.++..+++.+.+-.....- ..+....|++.++|.+-.+.
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHH
Confidence 11122235788999999999999988763211111 12346778888888886544
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.36 E-value=9.5e-06 Score=88.35 Aligned_cols=176 Identities=17% Similarity=0.126 Sum_probs=102.1
Q ss_pred ccccCCCcccchhhHHHHHHhHh----------cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhh
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLC----------TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE 261 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 261 (963)
++..-..++|.+..+++|.+.+. ......+-+.|+|++|+|||+||+++++.....| +.+ +.....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v-~~~~l~ 88 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSV-SSSDLV 88 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEE-EHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEE-chHHHh
Confidence 34445789999999999988773 1222346789999999999999999998764332 122 111110
Q ss_pred cc--CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-------------HHHHHHHHhcc---CCCC
Q 002125 262 ET--GGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP-------------RQIESLIRRLD---RLAS 323 (963)
Q Consensus 262 ~~--~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~---~~~~ 323 (963)
.. .......+.++ ...-..++.+|+||+++.. .....++..+. ....
T Consensus 89 ~~~~g~~~~~~~~~f---------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 89 SKWMGESEKLVKQLF---------------AMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp TTTGGGHHHHHHHHH---------------HHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred hcccchHHHHHHHHH---------------HHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 00 00111111111 1122356789999999743 11334443332 2234
Q ss_pred CceEEEEeCCchhhhc---CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002125 324 GSRVIITTRDKQVLKN---CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGV 388 (963)
Q Consensus 324 gs~IivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~ 388 (963)
+..||.||.....+.. -.....+.++..+.++-.+++..++..... .........+++.+.|.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC--VLTKEDYRTLGAMTEGY 219 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC--CCCHHHHHHHHHTTTTC
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCC
Confidence 5666667765433211 023357888999999999999887733221 11234466777777763
No 185
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.34 E-value=1.6e-05 Score=89.28 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=40.9
Q ss_pred ccccCCCcccccceeeeEEecCC--ccCCC-ccccCCCCcEEeecCCCCccccc-cccCCCCCccEEeCcC
Q 002125 544 DLVNFPSVTSCHVYTLELVKVGI--KELPS-SIECLSNLKKLYIVDCSKLESIS-SSIFKLKSLQSIEISN 610 (963)
Q Consensus 544 ~~~~~~~f~~~~l~~L~~l~~~~--~~lp~-~~~~L~~L~~L~L~~~~~~~~lp-~~~~~L~~L~~L~Ls~ 610 (963)
..+...+| .++.+|+.+.+.. ..++. .|.++++|+.+++.++ +..++ ..+.++.+|+.+.+..
T Consensus 60 tsIg~~AF--~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 60 VSIGYAAF--QGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EEECTTTT--TTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred eEhHHHHh--hCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccC
Confidence 34566788 7777777776642 34443 6788888888888652 44444 4566677777766654
No 186
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.34 E-value=9.7e-06 Score=86.01 Aligned_cols=169 Identities=11% Similarity=0.029 Sum_probs=93.1
Q ss_pred CCcccchhhHHHHHH-------hHhc-CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHH
Q 002125 197 KDLVGVEWRIKEIES-------LLCT-GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 268 (963)
..++|.+..++++.. .+.. +....+.+.|+|++|+|||++|+.+++.....| +.+...... .......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~-~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM-IGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC-TTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh-cCCchHH
Confidence 467788777666555 2221 245567899999999999999999998753322 122211100 0000010
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH------------HHHHHHHHhccC---CCCCceEEEEeCC
Q 002125 269 LQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP------------RQIESLIRRLDR---LASGSRVIITTRD 333 (963)
Q Consensus 269 l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~------------~~~~~l~~~l~~---~~~gs~IivTTR~ 333 (963)
....+ . ..+......+..+|+||+++.. ..++.+...+.. .+....||.||..
T Consensus 109 ~~~~~-~-----------~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 109 KCQAM-K-----------KIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR 176 (272)
T ss_dssp HHHHH-H-----------HHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC
T ss_pred HHHHH-H-----------HHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC
Confidence 00000 0 0112223356889999998643 223444443332 2334456777877
Q ss_pred chhhhc---C-CcceEEEeccCCH-HHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCC
Q 002125 334 KQVLKN---C-RARQIFRMKELED-ADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGV 388 (963)
Q Consensus 334 ~~v~~~---~-~~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~ 388 (963)
...... . .....+++++++. ++..+++.+.. . -..+....+++.+.|.
T Consensus 177 ~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~---~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 177 KDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N---FKDKERTTIAQQVKGK 229 (272)
T ss_dssp HHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C---SCHHHHHHHHHHHTTS
T ss_pred hhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C---CCHHHHHHHHHHhcCC
Confidence 644332 1 1246788999988 66666655421 1 1234577888888884
No 187
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=1.6e-05 Score=89.42 Aligned_cols=124 Identities=14% Similarity=0.173 Sum_probs=60.6
Q ss_pred ccCCCCCCcEEEecCccccccCccccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCCCC
Q 002125 677 ELGNLKALEMLIVDGTAIREVPKSLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGNLK 756 (963)
Q Consensus 677 ~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~l~ 756 (963)
.+.++..|+.+.+..+...--...+.++..|+.+...... ++... +..+.+|+.+.+..+ ....-...|.+++
T Consensus 248 ~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~--F~~~~~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPEKT--FYGCSSLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp TTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECTTT--TTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred cccccccceeEEcCCCcceeeccccccccccceeccCcee----ecccc--ccccccccccccccc-cceechhhhcCCC
Confidence 3445555666655544332222335555555555544321 12111 112556666665432 2222233456666
Q ss_pred CccEEEcCCCCCcccC-cccCCCCCCCEEECcCCCCcccCc-cccCCCCCCEEEe
Q 002125 757 ALETLIIDGTAMREVP-ESLGQLSSVKNLVLTNNNLKRLPE-SLNQLSSLEYLQL 809 (963)
Q Consensus 757 ~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 809 (963)
+|+.++|..+ ++.++ .+|.++++|+.++|..+ ++.|+. .|.+|++|+.+++
T Consensus 321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 6666666433 55553 34666666666666544 555542 3555555555554
No 188
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.33 E-value=2.1e-05 Score=82.79 Aligned_cols=175 Identities=17% Similarity=0.144 Sum_probs=97.6
Q ss_pred CCCcccchhhHHHHHHhHhc----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccC-
Q 002125 196 NKDLVGVEWRIKEIESLLCT----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETG- 264 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~- 264 (963)
.++++|.+..++++.+++.. +....+.+.|+|++|+|||++|+.+++.....| +.+. ........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 46789999888888766541 112345688999999999999999998764332 2222 21111111
Q ss_pred CH-HHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-----------------HHHHHHHHhccCC--CCC
Q 002125 265 GI-KDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP-----------------RQIESLIRRLDRL--ASG 324 (963)
Q Consensus 265 ~~-~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-----------------~~~~~l~~~l~~~--~~g 324 (963)
+. ...... .+.......+.+|++|+++.. ..+..++..+... ..+
T Consensus 81 ~~~~~~~~~---------------~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 81 GLGAARVRS---------------LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp THHHHHHHH---------------HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred ChhHHHHHH---------------HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 00 011111 112222356789999999764 1133444433322 235
Q ss_pred ceEEEEeCCchhhhc----C-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch
Q 002125 325 SRVIITTRDKQVLKN----C-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL 390 (963)
Q Consensus 325 s~IivTTR~~~v~~~----~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL 390 (963)
..||.||........ . .....+.++..+.++..+++...+..... ..........+++.+.|.+-
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCH
Confidence 566777765432211 1 23467889999999999999877632221 11222234677777777654
No 189
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=3.9e-06 Score=92.94 Aligned_cols=196 Identities=13% Similarity=0.097 Sum_probs=108.2
Q ss_pred ccccCCCcccchhhHHHHHHhH-hcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEe--------------
Q 002125 192 FQSYNKDLVGVEWRIKEIESLL-CTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN-------------- 256 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~-------------- 256 (963)
.|.....++|.+..++.+.+++ ..+. ... +.|+|+.|+||||+|+.++..+...-...+.+..
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 3455577999999999999888 4332 233 8999999999999999999864222111111100
Q ss_pred ---------cchhhcc-CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCC
Q 002125 257 ---------VREAEET-GGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASG 324 (963)
Q Consensus 257 ---------~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~g 324 (963)
+. .+.. .......++.+..+.........-.+ ..+.+++-++|+|+++.. +....+...+.....+
T Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 87 VVSSPYHLEIT-PSDMGNNDRIVIQELLKEVAQMEQVDFQDSK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp CEECSSEEEEC-CC----CCHHHHHHHHHHHTTTTC-------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred eecccceEEec-HhhcCCcchHHHHHHHHHHHHhccccccccc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 00 0000 00000122222222211110000000 002346779999999763 3344555444434567
Q ss_pred ceEEEEeCCch-hhhcC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcH-HHHHHHHHHHhcCCchhHH
Q 002125 325 SRVIITTRDKQ-VLKNC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASH-IELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 325 s~IivTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~g~PLal~ 393 (963)
.++|++|.+.. +.... .....+++.+++.++..+.+...+-..... -. .+.+..|++.++|.+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~ 234 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSL 234 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHH
Confidence 78888876542 22111 223689999999999999998776321111 11 2567889999999886544
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.28 E-value=9.1e-06 Score=88.69 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=99.9
Q ss_pred cCCCcc-cchhh--HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHH
Q 002125 195 YNKDLV-GVEWR--IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQK 271 (963)
Q Consensus 195 ~~~~~v-Gr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 271 (963)
..++|| |.... ...+..++..+......+.|+|++|+||||||+.+++.....-...+++. . ..+..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~---------~~~~~ 78 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A---------DDFAQ 78 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H---------HHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H---------HHHHH
Confidence 345665 54433 33445555443334567899999999999999999997754422334443 1 11222
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH----HHHHHHHhccC-CCCCceEEEEeCCchh---------h
Q 002125 272 ELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR----QIESLIRRLDR-LASGSRVIITTRDKQV---------L 337 (963)
Q Consensus 272 ~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~----~~~~l~~~l~~-~~~gs~IivTTR~~~v---------~ 337 (963)
.+...+.. .....+.+.+. ++.+|++||++... ..+.+...+.. ...|.+||+||..... .
T Consensus 79 ~~~~~~~~----~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~ 153 (324)
T 1l8q_A 79 AMVEHLKK----GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLV 153 (324)
T ss_dssp HHHHHHHH----TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHH
T ss_pred HHHHHHHc----CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhh
Confidence 22222221 12233333343 36799999995432 22333322211 1346678888864321 1
Q ss_pred hcCCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 338 KNCRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 338 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
..+....++++++ +.++..+++...+..... .-..+..+.+++++ |..-.
T Consensus 154 sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 154 SRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHH
T ss_pred hcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHH
Confidence 1122235789999 999999999887632221 12245677888888 77653
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.27 E-value=1.6e-05 Score=85.55 Aligned_cols=195 Identities=19% Similarity=0.189 Sum_probs=107.9
Q ss_pred HHHHHHhhhc-ccccccCCCcccchhhHHHHHHhHhcC----------CCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 180 IANEILERLE-ETFQSYNKDLVGVEWRIKEIESLLCTG----------FAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 180 i~~~v~~~l~-~~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
+++.+.+.+. ..++.....++|.+..++.+.+.+... ....+.+.|+|++|+|||++|+.++......|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 3444443333 223445578999999999998877421 12346789999999999999999998754322
Q ss_pred CceEEEEecchhhcc--CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-------------HHHHH
Q 002125 249 EGSYFAQNVREAEET--GGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP-------------RQIES 313 (963)
Q Consensus 249 ~~~~~~~~~~~~~~~--~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~ 313 (963)
+.+. ....... .......+.++ ......++.+|++|+++.. .....
T Consensus 83 ---~~i~-~~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 143 (297)
T 3b9p_A 83 ---LNIS-AASLTSKYVGDGEKLVRALF---------------AVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTE 143 (297)
T ss_dssp ---EEEE-STTTSSSSCSCHHHHHHHHH---------------HHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHH
T ss_pred ---EEee-HHHHhhcccchHHHHHHHHH---------------HHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHH
Confidence 1222 1111100 01111111111 1122356789999998543 11223
Q ss_pred HHHhccCC-----CCCceEEEEeCCchhhhc-C--CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHh
Q 002125 314 LIRRLDRL-----ASGSRVIITTRDKQVLKN-C--RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYA 385 (963)
Q Consensus 314 l~~~l~~~-----~~gs~IivTTR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~ 385 (963)
++..+... +.+..||.||.....+.. . .....+.++..+.++..+++...+-..... -..+....+++.+
T Consensus 144 ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~ 221 (297)
T 3b9p_A 144 FLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKIT 221 (297)
T ss_dssp HHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHT
T ss_pred HHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHc
Confidence 33222211 234566777765432111 0 123567888888888888887765322111 1234567888888
Q ss_pred cCCch-hHHHh
Q 002125 386 QGVPL-ALKVL 395 (963)
Q Consensus 386 ~g~PL-al~~l 395 (963)
.|.+- ++..+
T Consensus 222 ~g~~~~~l~~l 232 (297)
T 3b9p_A 222 DGYSGSDLTAL 232 (297)
T ss_dssp TTCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 88875 55444
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.26 E-value=1.1e-05 Score=87.24 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=90.3
Q ss_pred CcccchhhHHHHHHhHhcC-------------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCC----ceEEEEecchh
Q 002125 198 DLVGVEWRIKEIESLLCTG-------------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFE----GSYFAQNVREA 260 (963)
Q Consensus 198 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~~~~~~~ 260 (963)
.++|.+..++.+.+++... ......+.|+|++|+|||++|+.+++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 4889999988888766411 234457899999999999999999987644321 222221 1111
Q ss_pred hcc-CC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCC-----------CHHHHHHHHHhccCCCCCceE
Q 002125 261 EET-GG-IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVT-----------HPRQIESLIRRLDRLASGSRV 327 (963)
Q Consensus 261 ~~~-~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~-----------~~~~~~~l~~~l~~~~~gs~I 327 (963)
... .+ .......++ +.. +..+|++|+++ ..+....+...+.....+..|
T Consensus 111 ~~~~~g~~~~~~~~~~----------------~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVL----------------KRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp CCSSTTCHHHHHHHHH----------------HHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred hhhcccccHHHHHHHH----------------Hhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 000 00 011011111 111 34599999997 445566666666555567788
Q ss_pred EEEeCCch----------hhhcCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 328 IITTRDKQ----------VLKNCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 328 ivTTR~~~----------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
|.||.... +... ....+++++++.++..+++...+
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHH
Confidence 88886432 1211 23689999999999999988776
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.26 E-value=1.2e-05 Score=89.62 Aligned_cols=196 Identities=12% Similarity=0.008 Sum_probs=106.1
Q ss_pred CCCcccchhhHHHHH---HhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHH
Q 002125 196 NKDLVGVEWRIKEIE---SLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKE 272 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~---~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 272 (963)
.+.+||++..++.+. ..+..+....+.+.|+|++|+|||++|+.+++.+....+.. .+....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhcccchhHHHHH
Confidence 568999999987754 44444433346889999999999999999999876433221 12211111111222222222
Q ss_pred HHHhhhcC-------------------------------CCCCCHHHHHHH---------HcCC----ceEEEEcCCCCH
Q 002125 273 LLSKLLND-------------------------------RNVWNIESQLNR---------LARK----KFLIVFDDVTHP 308 (963)
Q Consensus 273 ll~~l~~~-------------------------------~~~~~~~~l~~~---------L~~k----~~LlVLDdv~~~ 308 (963)
.+....+. ........+++. ..++ +.+|++|+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 22221110 000001111111 1233 459999999754
Q ss_pred --HHHHHHHHhccCCCCCceEEEEeCC-c------------hhhhc-CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCC
Q 002125 309 --RQIESLIRRLDRLASGSRVIITTRD-K------------QVLKN-CRARQIFRMKELEDADAHKLFCQCAFGGDHPDA 372 (963)
Q Consensus 309 --~~~~~l~~~l~~~~~gs~IivTTR~-~------------~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 372 (963)
+....+...+...... .++++|.. . .+... ......+.+++++.++..+++...+-... ..
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~--~~ 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEED--VE 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTT--CC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcC--CC
Confidence 4455566555433333 34444431 1 01000 11224589999999999999987763222 12
Q ss_pred cHHHHHHHHHHHhc-CCchhHHHh
Q 002125 373 SHIELTDKAIKYAQ-GVPLALKVL 395 (963)
Q Consensus 373 ~~~~~~~~i~~~~~-g~PLal~~l 395 (963)
-..+..+.+++++. |.|..+..+
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 23466788899998 887655443
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.25 E-value=2.2e-05 Score=86.53 Aligned_cols=182 Identities=16% Similarity=0.098 Sum_probs=102.3
Q ss_pred cccCCCcccchhhHHHHHHhHhc----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhc
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEE 262 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 262 (963)
+.....++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.....| +.+ +......
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v-~~~~l~~ 122 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSV-SSSDLVS 122 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEE-EHHHHHS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEe-eHHHHhh
Confidence 33456799999999999887631 112235688999999999999999998764322 112 1111100
Q ss_pred cC--CHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH-------------HHHHHHHhccC---CCCC
Q 002125 263 TG--GIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR-------------QIESLIRRLDR---LASG 324 (963)
Q Consensus 263 ~~--~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~-------------~~~~l~~~l~~---~~~g 324 (963)
.. ......+.+ +...-..++.+|+||+++... ....++..+.. ...+
T Consensus 123 ~~~g~~~~~~~~~---------------f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 123 KWMGESEKLVKQL---------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp CC---CHHHHHHH---------------HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred hhcchHHHHHHHH---------------HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 00 001111111 111223578899999997531 13334333322 1345
Q ss_pred ceEEEEeCCchhhhc---CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCC-chhHHHh
Q 002125 325 SRVIITTRDKQVLKN---CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGV-PLALKVL 395 (963)
Q Consensus 325 s~IivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~l 395 (963)
..||.||.....+.. -.....+.++..+.++..+++..+...... .-.......|++.+.|. +-.|..+
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 566667764422110 033467889999999999999887632211 11234567788888874 4344443
No 195
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.22 E-value=3.5e-05 Score=83.66 Aligned_cols=174 Identities=17% Similarity=0.152 Sum_probs=98.5
Q ss_pred cCCCcccchhhHHHHHHhHhc---------C-CCCeEEEEEEccCCCChhhHHHHHHHHH-hccCCceEEEEecchhhcc
Q 002125 195 YNKDLVGVEWRIKEIESLLCT---------G-FAGVYILGIWGIGGIGKTTIADAVFNKI-SRHFEGSYFAQNVREAEET 263 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~~~~~~~~ 263 (963)
.-+.++|.+..++.|.+.+.. + ....+.|.|+|++|+|||+||+++++.. ...| +.+. ..+....
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~~~ 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLVSK 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSCCS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHHhh
Confidence 346788999888888776631 1 1234678999999999999999999875 2211 1121 1111000
Q ss_pred --CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-------------HHHHHHHHhccCC---CCCc
Q 002125 264 --GGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP-------------RQIESLIRRLDRL---ASGS 325 (963)
Q Consensus 264 --~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~---~~gs 325 (963)
.......+.++. ..-..++.+|++|+++.. .....++..+... ..+.
T Consensus 86 ~~g~~~~~~~~lf~---------------~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 86 WLGESEKLVKNLFQ---------------LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp SCCSCHHHHHHHHH---------------HHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred hhhHHHHHHHHHHH---------------HHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 011111222211 112356889999999754 1233444433322 3445
Q ss_pred eEEEEeCCchhhhc---CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 326 RVIITTRDKQVLKN---CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 326 ~IivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
.||.||........ -.....+.++..+.++..+++..+.-.... .........+++.+.|..
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN--SLTEADFRELGRKTDGYS 215 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB--CCCHHHHHHHHHTCTTCC
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCC
Confidence 56656654322110 033467889999999999999877632211 112345677777777763
No 196
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.22 E-value=1.7e-05 Score=86.58 Aligned_cols=178 Identities=14% Similarity=0.145 Sum_probs=104.6
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKE 272 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 272 (963)
|...++++|.+..++.+.+++..+ ....++.+.|++|+|||++|+.+++.+... .+.+. . + ..+...+ ++
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~---~-~~~~~~i-~~ 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G---S-DCKIDFV-RG 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T---T-TCCHHHH-HT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c---c-ccCHHHH-HH
Confidence 455678999999999999999744 334677888999999999999999876322 22222 1 1 1222222 22
Q ss_pred HHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH---HHHHHHHhccCCCCCceEEEEeCCchhhh-cC-CcceEEE
Q 002125 273 LLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR---QIESLIRRLDRLASGSRVIITTRDKQVLK-NC-RARQIFR 347 (963)
Q Consensus 273 ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~---~~~~l~~~l~~~~~gs~IivTTR~~~v~~-~~-~~~~~~~ 347 (963)
.+........ ..+++.+||+|+++... ..+.+...+.....+.++|+||....-.. .. ....+++
T Consensus 92 ~~~~~~~~~~----------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~ 161 (324)
T 3u61_B 92 PLTNFASAAS----------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVIT 161 (324)
T ss_dssp HHHHHHHBCC----------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEE
T ss_pred HHHHHHhhcc----------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEE
Confidence 2221111100 12467899999998753 44555544433345678888887643211 00 1225799
Q ss_pred eccCCHHHHHHHH-------HHhhcCCCCCCCcHHHHHHHHHHHhcCCchh
Q 002125 348 MKELEDADAHKLF-------CQCAFGGDHPDASHIELTDKAIKYAQGVPLA 391 (963)
Q Consensus 348 l~~L~~~ea~~Lf-------~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLa 391 (963)
+++++.+|-.+++ ...+...... -...+....+++.++|.+..
T Consensus 162 ~~~~~~~e~~~il~~~~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 162 FGQPTDEDKIEMMKQMIRRLTEICKHEGIA-IADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHTCC-BSCHHHHHHHHHHTCSCTTH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHhCCCCHHH
Confidence 9999988854332 2222111111 11125677888888887764
No 197
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.20 E-value=1.1e-05 Score=91.62 Aligned_cols=177 Identities=18% Similarity=0.252 Sum_probs=106.3
Q ss_pred cccCCCcccchhhH---HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 193 QSYNKDLVGVEWRI---KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 193 ~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
|.....+||.+..+ +.+...+..+ ..+.+.|+|++|+||||+|+.+++.....|. -+.. ...+...+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~a-----~~~~~~~i 91 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE---RISA-----VTSGVKEI 91 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEET-----TTCCHHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEEe-----ccCCHHHH
Confidence 45567899999888 7788877654 3467899999999999999999987644331 1111 11222222
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHH--HHHHHHHhccCCCCCceEEE-EeCCchh--hh-cCCcc
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPR--QIESLIRRLDRLASGSRVII-TTRDKQV--LK-NCRAR 343 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~--~~~~l~~~l~~~~~gs~Iiv-TTR~~~v--~~-~~~~~ 343 (963)
. +++... ......+++.+|++|+++... +.+.|+..+.. ....+|. ||.+... .. .....
T Consensus 92 r-~~~~~a-----------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 92 R-EAIERA-----------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRA 157 (447)
T ss_dssp H-HHHHHH-----------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTE
T ss_pred H-HHHHHH-----------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCce
Confidence 2 121111 011124678899999997643 34445544442 2233443 5555421 11 11234
Q ss_pred eEEEeccCCHHHHHHHHHHhhcCCC-----CCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 344 QIFRMKELEDADAHKLFCQCAFGGD-----HPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 344 ~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
.++.+.+++.++..+++.+.+-... ....-..+..+.++++++|.+-.+.
T Consensus 158 ~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 158 RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 5889999999999999988763311 1112245677888999999886544
No 198
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.20 E-value=2.9e-05 Score=86.92 Aligned_cols=183 Identities=17% Similarity=0.135 Sum_probs=101.8
Q ss_pred ccccCCCcccchhhHHHHHHhHhc----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhh
Q 002125 192 FQSYNKDLVGVEWRIKEIESLLCT----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE 261 (963)
Q Consensus 192 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 261 (963)
++.....++|.+..++.+.+++.. .....+.+.|+|.+|+|||+||+.++++.... ++..+.....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhh
Confidence 344457899999999999888731 01224678999999999999999998874332 2222211111
Q ss_pred cc--CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-------------HHHHHHHHhcc----CCC
Q 002125 262 ET--GGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP-------------RQIESLIRRLD----RLA 322 (963)
Q Consensus 262 ~~--~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~----~~~ 322 (963)
.. .........++ ...-...+.+|+||+++.. .....++..+. ...
T Consensus 186 ~~~~g~~~~~~~~~~---------------~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 SKYVGEGEKLVRALF---------------AVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ------CHHHHHHHH---------------HHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred ccccchHHHHHHHHH---------------HHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 00011111111 1112345689999999643 11223332221 112
Q ss_pred CCceEEEEeCCchhhhc---CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCch-hHHHh
Q 002125 323 SGSRVIITTRDKQVLKN---CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPL-ALKVL 395 (963)
Q Consensus 323 ~gs~IivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~l 395 (963)
....||.||.....+.. -.....+.+...+.++..+++...+-..... -..+....+++.+.|..- ++..+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 34556666654322111 1233568899999999999998776332221 223456788888888654 55444
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.18 E-value=3.5e-05 Score=82.94 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=91.7
Q ss_pred cCCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhcc
Q 002125 195 YNKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET 263 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 263 (963)
....++|.+..+++|.+++.. +-...+.+.|+|++|+|||+||+.+++.....| +.+. .
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-~------ 82 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-G------ 82 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC-H------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE-h------
Confidence 346789999988888877652 223456789999999999999999998764221 1121 1
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHH-HHHHHHcCCceEEEEcCCCCHH----------------HHHHHHHhccCC--CCC
Q 002125 264 GGIKDLQKELLSKLLNDRNVWNIE-SQLNRLARKKFLIVFDDVTHPR----------------QIESLIRRLDRL--ASG 324 (963)
Q Consensus 264 ~~~~~l~~~ll~~l~~~~~~~~~~-~l~~~L~~k~~LlVLDdv~~~~----------------~~~~l~~~l~~~--~~g 324 (963)
..+. ....+... ..+. .+.......+.+|++|+++... ....++..+... ..+
T Consensus 83 ---~~l~----~~~~g~~~-~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 83 ---PELL----TMWFGESE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp ---HHHH----HHHHTTCT-THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred ---HHHH----hhhcCchH-HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 1121 12222111 1222 2223334578999999997532 124444443322 235
Q ss_pred ceEEEEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHHHhh
Q 002125 325 SRVIITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 325 s~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
..||.||.....+.. ......+.++..+.++-.+++....
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 667777765532211 1234688999999999999887766
No 200
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.18 E-value=7.4e-06 Score=81.12 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=42.4
Q ss_pred ccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 194 SYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
.....++||+.+++++.+.+.. ...+.+.|+|++|+|||++|+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456799999999999999864 33456789999999999999999987654
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.15 E-value=3.7e-05 Score=87.43 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=104.4
Q ss_pred cccCCCcccchhhHHHHHHhHhc----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhc
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEE 262 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 262 (963)
+.....++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++... ...++..+...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---~~~~~~v~~~~--- 203 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSD--- 203 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---SSEEEEECCC----
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---CCCEEEEeHHH---
Confidence 34457899999999999887631 112346789999999999999999998751 11111111110
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH-cCCceEEEEcCCCCH-------------HHHHHHHHhccCC---CCCc
Q 002125 263 TGGIKDLQKELLSKLLNDRNVWNIESQLNRL-ARKKFLIVFDDVTHP-------------RQIESLIRRLDRL---ASGS 325 (963)
Q Consensus 263 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~---~~gs 325 (963)
+. ....+. ....+..+.+.. ..++.+|+||+++.. .....++..+... ..+.
T Consensus 204 ------l~----~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 ------LV----SKWLGE-SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp -------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred ------HH----hhhcch-HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 00 111111 112233333322 357889999999754 2244455444332 3456
Q ss_pred eEEEEeCCchhhhc---CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc-hhHHH
Q 002125 326 RVIITTRDKQVLKN---CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP-LALKV 394 (963)
Q Consensus 326 ~IivTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~ 394 (963)
.||.||.....+.. -.....+.++..+.++..+++..+..... ..........|++.+.|.. -.|..
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ--NSLTEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC--EECCHHHHHHHHHHTTTCCHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 66767765422111 12345788888999999999887763221 1112345667788887743 33443
No 202
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.09 E-value=0.00015 Score=81.28 Aligned_cols=76 Identities=9% Similarity=0.279 Sum_probs=34.2
Q ss_pred CCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccC-cccCCCCCCCEEECcCCCCcccCc-cccCCCCCCEEE
Q 002125 731 FKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVP-ESLGQLSSVKNLVLTNNNLKRLPE-SLNQLSSLEYLQ 808 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 808 (963)
+++|+.+.+.. .....-...|.++.+|+.+.|..+ ++.+. .+|.++.+|+.+.|.. +++.|+. .|.+|++|+.++
T Consensus 287 c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEE
Confidence 44555555431 122222233455555555555432 33332 2355555555555533 2444542 345555555555
Q ss_pred e
Q 002125 809 L 809 (963)
Q Consensus 809 L 809 (963)
+
T Consensus 364 ~ 364 (394)
T 4gt6_A 364 Y 364 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 203
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.08 E-value=0.00016 Score=81.03 Aligned_cols=57 Identities=11% Similarity=0.239 Sum_probs=27.5
Q ss_pred cCCCCCccEEEcCCCCCcccCcccCCCCCCCEEECcCCCCcccCc-cccCCCCCCEEEe
Q 002125 752 LGNLKALETLIIDGTAMREVPESLGQLSSVKNLVLTNNNLKRLPE-SLNQLSSLEYLQL 809 (963)
Q Consensus 752 l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 809 (963)
|.++.+|+.+.+..+..+--...|.++++|+.+.+. +.++.|++ .|.+|++|+.++|
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred eeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEe
Confidence 445555555555443322222334555555555553 34445542 2455555555555
No 204
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.04 E-value=0.00013 Score=79.75 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=103.1
Q ss_pred hhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCC---------------------ceEEEEecchhh
Q 002125 203 EWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFE---------------------GSYFAQNVREAE 261 (963)
Q Consensus 203 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~~~~~~~~~~~ 261 (963)
++..+.+...+..+ .-.+.+.++|+.|+|||++|+.+++.+..... ...++... ...
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE-KGK 85 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC-TTC
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-ccC
Confidence 34455666666533 33457889999999999999999987643221 11222100 000
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCch-hhh
Q 002125 262 ETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDKQ-VLK 338 (963)
Q Consensus 262 ~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~ 338 (963)
...++.. .+++...+.... ..+++-++|+|+++.. +....+...+.....++.+|++|.+.. +..
T Consensus 86 ~~~~i~~-ir~l~~~~~~~~-----------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ 153 (334)
T 1a5t_A 86 NTLGVDA-VREVTEKLNEHA-----------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLA 153 (334)
T ss_dssp SSBCHHH-HHHHHHHTTSCC-----------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCH
T ss_pred CCCCHHH-HHHHHHHHhhcc-----------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcH
Confidence 0111111 112222221110 1246789999999753 456677776665556777777776653 222
Q ss_pred cC-CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHHHh
Q 002125 339 NC-RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALKVL 395 (963)
Q Consensus 339 ~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~~l 395 (963)
.. .....+++.+++.++..+.+.... .-..+.+..+++.++|.|..+..+
T Consensus 154 ti~SRc~~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 154 TLRSRCRLHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred HHhhcceeeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 21 234689999999999999988775 112345678999999999765544
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=0.00026 Score=77.60 Aligned_cols=183 Identities=15% Similarity=0.216 Sum_probs=107.2
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEEEecchhhccCCHHHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQK 271 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~ 271 (963)
|.....++|.+..++.|...+..+. .+.+.++|++|+||||+|+.++..+... +...+.-.+ .+...+...+.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~---~~~~~~~~~ir- 94 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASDDRGIDVVR- 94 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTSCCSHHHHH-
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc---CcccccHHHHH-
Confidence 4445678999999999988887542 2238999999999999999999876432 211111111 11112222222
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEEEeCCch-hhhc-CCcceEEE
Q 002125 272 ELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTH--PRQIESLIRRLDRLASGSRVIITTRDKQ-VLKN-CRARQIFR 347 (963)
Q Consensus 272 ~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~-~~~~~~~~ 347 (963)
+.+......... +.+.+-++|+|+++. .+..+.+...+.......++|++|.... +... ......++
T Consensus 95 ~~i~~~~~~~~~---------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~ 165 (340)
T 1sxj_C 95 NQIKDFASTRQI---------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFR 165 (340)
T ss_dssp THHHHHHHBCCS---------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHHHHHHhhccc---------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEe
Confidence 122211110000 113467899999854 3444555554444456677777775442 1111 12235789
Q ss_pred eccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhH
Q 002125 348 MKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLAL 392 (963)
Q Consensus 348 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal 392 (963)
+.+++.++..+.+...+-.... .-..+..+.+++.++|.+--+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 166 FQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 9999999999888776522111 122456788999999988743
No 206
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.92 E-value=3.9e-05 Score=94.92 Aligned_cols=151 Identities=14% Similarity=0.136 Sum_probs=83.0
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC------CceEEEEecchhhc----
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEE---- 262 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~---- 262 (963)
+...+.+|||+++++++.+.|... ..+.+.|+|.+|+|||++|+.+++++.... ...++..+......
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~ 243 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY 243 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cCCCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCcc
Confidence 445577999999999999998753 234578999999999999999999874421 22222222211100
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHc--CCceEEEEcCCCCHH---------H-HHHHHHhccCCCCCceEEEE
Q 002125 263 TGGIKDLQKELLSKLLNDRNVWNIESQLNRLA--RKKFLIVFDDVTHPR---------Q-IESLIRRLDRLASGSRVIIT 330 (963)
Q Consensus 263 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~--~k~~LlVLDdv~~~~---------~-~~~l~~~l~~~~~gs~IivT 330 (963)
........+ .+.+.+. +++.+|++|+++... + ...+.+.+. ..+.++|.+
T Consensus 244 ~g~~~~~l~----------------~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~a 305 (854)
T 1qvr_A 244 RGEFEERLK----------------AVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGA 305 (854)
T ss_dssp --CHHHHHH----------------HHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEE
T ss_pred chHHHHHHH----------------HHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEe
Confidence 001111111 1222222 367899999997643 1 112333332 233455655
Q ss_pred eCCchh-----hhcC-CcceEEEeccCCHHHHHHHHHHh
Q 002125 331 TRDKQV-----LKNC-RARQIFRMKELEDADAHKLFCQC 363 (963)
Q Consensus 331 TR~~~v-----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 363 (963)
|..... .... .....+.+++++.++..+++...
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 543321 1111 11235889999999999998643
No 207
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.91 E-value=4.4e-05 Score=76.82 Aligned_cols=123 Identities=17% Similarity=0.192 Sum_probs=67.7
Q ss_pred cCCCcccchh----hHHHHHHhHhcCCCC--eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHH
Q 002125 195 YNKDLVGVEW----RIKEIESLLCTGFAG--VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKD 268 (963)
Q Consensus 195 ~~~~~vGr~~----~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 268 (963)
..++|++.+. .++.+.+++...... .+.+.|+|.+|+|||+||+.+++....+...++++.. ..
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~----------~~ 92 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV----------PE 92 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH----------HH
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh----------HH
Confidence 3456776543 334455555533222 2678999999999999999999987766555666541 12
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HH------HHHHHHhccCCCCCceEEEEeCCc
Q 002125 269 LQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQ------IESLIRRLDRLASGSRVIITTRDK 334 (963)
Q Consensus 269 l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~------~~~l~~~l~~~~~gs~IivTTR~~ 334 (963)
+...+...... .....+.+.+.+. -+|||||++.. .. +..+.... ...+.++|+||...
T Consensus 93 ~~~~~~~~~~~----~~~~~~~~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~--~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 93 LFRELKHSLQD----QTMNEKLDYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYR--MFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHHHHC-------CCCHHHHHHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHH--HHTTCCEEEEESSC
T ss_pred HHHHHHHHhcc----chHHHHHHHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHH--HhCCCCEEEEcCCC
Confidence 23333222211 1223334444433 38999999542 11 22222211 12456788888743
No 208
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00035 Score=76.68 Aligned_cols=172 Identities=19% Similarity=0.218 Sum_probs=102.8
Q ss_pred cCCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhcc
Q 002125 195 YNKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET 263 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 263 (963)
.-+++.|.++.+++|.+.+.. +-..++-|.++|++|+|||.||+++++.....|- .+ ...+....
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~---~v-~~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI---RV-SGAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE---EE-EGGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce---EE-EhHHhhcc
Confidence 346788999999988876651 3344577899999999999999999997655441 22 22111111
Q ss_pred -CC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----------------HHHHHHHHhccCCC--C
Q 002125 264 -GG-IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------------RQIESLIRRLDRLA--S 323 (963)
Q Consensus 264 -~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~~--~ 323 (963)
.+ -....++++.. .-...+++|++|+++.. ..+..++..+..+. .
T Consensus 222 ~vGese~~vr~lF~~---------------Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 222 YIGEGSRMVRELFVM---------------AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp STTHHHHHHHHHHHH---------------HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ccchHHHHHHHHHHH---------------HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 11 12222222222 22356899999998642 12344554444332 3
Q ss_pred CceEEEEeCCchhh-----hcCCcceEEEeccCCHHHHHHHHHHhhcCCCC-CCCcHHHHHHHHHHHhcCCc
Q 002125 324 GSRVIITTRDKQVL-----KNCRARQIFRMKELEDADAHKLFCQCAFGGDH-PDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 324 gs~IivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~P 389 (963)
+-.||.||.....+ ..-..+..++++..+.++-.++|+.+.-+-.. ...+ ...+++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 44556677644332 12235678999999999999999877632221 1112 456677777754
No 209
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.89 E-value=2.9e-05 Score=73.52 Aligned_cols=112 Identities=15% Similarity=0.066 Sum_probs=64.8
Q ss_pred CcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc-cCCceEEEEecchhhccCCHHHHHHHHHHh
Q 002125 198 DLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQNVREAEETGGIKDLQKELLSK 276 (963)
Q Consensus 198 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 276 (963)
+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++.... ..+. + +.. ...........
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~-v-~~~-~~~~~~~~~~~-------- 70 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF-V-YRE-LTPDNAPQLND-------- 70 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC-E-EEE-CCTTTSSCHHH--------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE-E-EEC-CCCCcchhhhc--------
Confidence 5899999999998877532222335789999999999999999875322 2222 2 332 11111111111
Q ss_pred hhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc
Q 002125 277 LLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK 334 (963)
Q Consensus 277 l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~ 334 (963)
..+.. +.-.|++|+++.. +....+...+.......+||.||...
T Consensus 71 ------------~~~~a--~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 71 ------------FIALA--QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ------------HHHHH--TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ------------HHHHc--CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 11111 2347899999653 33445555544445567888888643
No 210
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.89 E-value=0.00045 Score=75.36 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=97.3
Q ss_pred cccCCCcccchhhHHHHHHhHhcC---CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTG---FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
|.....++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...|. ... ... ......+
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~--~~~~~~l 93 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPV--LVKQGDM 93 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTT--CCSHHHH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chH--hcCHHHH
Confidence 334567889988888887776532 233467899999999999999999987643321 111 000 0111111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH--HHHHHHHHhccCCC--------C----------CceEE-
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP--RQIESLIRRLDRLA--------S----------GSRVI- 328 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~--------~----------gs~Ii- 328 (963)
. . +...+ .++.++++|+++.. ...+.+.......+ . ...++
T Consensus 94 ~-~----------------~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 94 A-A----------------ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp H-H----------------HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred H-H----------------HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 1 1 11111 23457778887542 23333432221111 0 11222
Q ss_pred EEeCCchhhhcC--CcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCchhHH
Q 002125 329 ITTRDKQVLKNC--RARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVPLALK 393 (963)
Q Consensus 329 vTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 393 (963)
.|++...+.... .......+++.+.++-.+++.+.+-... .....+.+..|++.+.|.|-.+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHH
Confidence 344433221111 1234688999999999999988763211 12334668899999999996543
No 211
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.85 E-value=0.00052 Score=76.38 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=52.3
Q ss_pred CCCCcEEEccCCCCCCcCccccCCCCCccEEEcCCCCCcccC-cccCCCCCCCEEECcCCCCcccCc-cccCCCCCCEEE
Q 002125 731 FKSLTSLEIIDCQNFMILPDELGNLKALETLIIDGTAMREVP-ESLGQLSSVKNLVLTNNNLKRLPE-SLNQLSSLEYLQ 808 (963)
Q Consensus 731 l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 808 (963)
+..|+.+.+..+ ....-...+.++.+|+.+.+..+ +..++ ..|..+++|+.+.+.++.++.|++ .|.+|++|+.+.
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred CccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 455666665433 22222334556666666666433 44443 246666677777776666666653 356666666666
Q ss_pred ec----------cCCCCCCceecCCcc
Q 002125 809 LH----------LRSPRKLTSLNLSVN 825 (963)
Q Consensus 809 L~----------~~~~~~L~~L~l~~n 825 (963)
|. +.+|.+|+++.+|.+
T Consensus 317 lp~~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 317 LPTALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCCCCCCTT
T ss_pred cCccccEEHHHHhhCCCCCCEEEECCc
Confidence 62 344666666666654
No 212
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.85 E-value=0.00013 Score=83.65 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=82.9
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC------CceEEEEecchhhccCCH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGI 266 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~ 266 (963)
+...+.+|||+.+++.+...+.... ..-+.|+|.+|+|||++|+.++..+...+ ...++..+..
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 3445679999999999999997532 23467999999999999999999875432 1112211110
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHH-HcCCceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchh---hhcC--
Q 002125 267 KDLQKELLSKLLNDRNVWNIESQLNR-LARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQV---LKNC-- 340 (963)
Q Consensus 267 ~~l~~~ll~~l~~~~~~~~~~~l~~~-L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v---~~~~-- 340 (963)
....+ .....+..+.+. -..++.+|++| ...+....+.+.+. ....++|.+|..... ....
T Consensus 246 --------~~~~g-~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~a 312 (468)
T 3pxg_A 246 --------TKYRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAA 312 (468)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred --------ccccc-hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHH
Confidence 00000 000122222222 23567899999 22222223333332 223556666554431 1110
Q ss_pred --CcceEEEeccCCHHHHHHHHHHhh
Q 002125 341 --RARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 341 --~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
....++.++.++.++..+++...+
T Consensus 313 l~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 313 LERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhCccceeCCCCHHHHHHHHHHHH
Confidence 122479999999999999998755
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.84 E-value=0.0001 Score=84.34 Aligned_cols=152 Identities=17% Similarity=0.179 Sum_probs=89.3
Q ss_pred CCCcccchhhHHHHHHhHhcC-----------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccC
Q 002125 196 NKDLVGVEWRIKEIESLLCTG-----------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETG 264 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 264 (963)
...++|.+..+++|.+++... ....+-|.|+|.+|+|||++|+++++.....| +.+ +........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~v-n~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEE-EHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEE-EchHhhhhh
Confidence 356899999999998887532 23456689999999999999999988653221 222 221111110
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-------------HHHHHHHHhccCC--CCCceEEE
Q 002125 265 GIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP-------------RQIESLIRRLDRL--ASGSRVII 329 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~--~~gs~Iiv 329 (963)
.......+ ...+.....+++.+|+||+++.. .....|+..+... ..+.+||.
T Consensus 279 -~g~~~~~~------------~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIa 345 (489)
T 3hu3_A 279 -AGESESNL------------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (489)
T ss_dssp -TTHHHHHH------------HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEE
T ss_pred -cchhHHHH------------HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEE
Confidence 00000000 01222334467889999998321 1233344333321 23456666
Q ss_pred EeCCchh-----hhcCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 330 TTRDKQV-----LKNCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 330 TTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
||..... .........+.++..+.++-.+++..++
T Consensus 346 aTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp EESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred ecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 7765422 1112334578999999999999998876
No 214
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.83 E-value=6.4e-05 Score=74.08 Aligned_cols=116 Identities=22% Similarity=0.183 Sum_probs=60.5
Q ss_pred hhHHHHHHhHhcC-CCCeEEEEEEccCCCChhhHHHHHHHHHhccCC-ceEEEEecchhhccCCHHHHHHHHHHhhhcCC
Q 002125 204 WRIKEIESLLCTG-FAGVYILGIWGIGGIGKTTIADAVFNKISRHFE-GSYFAQNVREAEETGGIKDLQKELLSKLLNDR 281 (963)
Q Consensus 204 ~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~ 281 (963)
..++.+.+++..- ....+.++|+|++|+||||||+.+++.+..... .+.++. ..++...+........
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD----------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE----------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHhcCch
Confidence 3344444444321 123468899999999999999999997752222 333443 1223333322222211
Q ss_pred CCCCHHHHHHHHcCCceEEEEcCCCC--H--HHHHHHHHhccC-CCCCceEEEEeCCc
Q 002125 282 NVWNIESQLNRLARKKFLIVFDDVTH--P--RQIESLIRRLDR-LASGSRVIITTRDK 334 (963)
Q Consensus 282 ~~~~~~~l~~~L~~k~~LlVLDdv~~--~--~~~~~l~~~l~~-~~~gs~IivTTR~~ 334 (963)
.. .+.+.+. +.-+|||||++. . ...+.+...+.. ...|..+|+||...
T Consensus 91 ~~----~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 DT----KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CS----HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HH----HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11 2333333 456889999962 1 121222222211 13567888888754
No 215
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.82 E-value=4.4e-06 Score=82.92 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=25.9
Q ss_pred CCccEEEcCCCCCc-----ccCcccCCCCCCCEEEC--cCCCCcc-----cCccccCCCCCCEEEecc
Q 002125 756 KALETLIIDGTAMR-----EVPESLGQLSSVKNLVL--TNNNLKR-----LPESLNQLSSLEYLQLHL 811 (963)
Q Consensus 756 ~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L--s~n~l~~-----lp~~l~~l~~L~~L~L~~ 811 (963)
++|++|+|++|.++ .+...+...++|++|+| ++|.+.. +...+...++|+.|+|++
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 34444444444444 13344444455555555 4455542 333344444555555444
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00039 Score=77.59 Aligned_cols=173 Identities=18% Similarity=0.262 Sum_probs=102.7
Q ss_pred ccCCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhc
Q 002125 194 SYNKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEE 262 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 262 (963)
..-.++.|.++.+++|.+.+.. +-..++-|.++|++|+|||.||+++++.....| +.....+...
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~s 253 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVD 253 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcc
Confidence 3457788999999988776651 334567899999999999999999999765443 2222222111
Q ss_pred c-CC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----------------HHHHHHHHhccCC--C
Q 002125 263 T-GG-IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------------RQIESLIRRLDRL--A 322 (963)
Q Consensus 263 ~-~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~ 322 (963)
. .+ .....+.++. ..-...+++|++|+++.. ..+..++..+..+ .
T Consensus 254 k~~Gese~~ir~~F~---------------~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 KYIGESARIIREMFA---------------YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp SSSSHHHHHHHHHHH---------------HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred ccchHHHHHHHHHHH---------------HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 1 11 1122222222 122357899999999632 1134455444432 2
Q ss_pred CCceEEEEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHHHhhcCCCC-CCCcHHHHHHHHHHHhcCCc
Q 002125 323 SGSRVIITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFCQCAFGGDH-PDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 323 ~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~P 389 (963)
.+..||.||-....+.. ...+..++++..+.++-.++|+.+.-+... ...+ ...+++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 34567777765443321 124567889989999999999877633221 1222 345666666653
No 217
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.80 E-value=6.9e-06 Score=81.53 Aligned_cols=119 Identities=15% Similarity=0.115 Sum_probs=84.7
Q ss_pred CCcccCCCCCCcEEEecCc-ccc-----ccCccccCCCCCcEEEccCCCCCCCCCcccc-cccCCCCCcEEEccCCCCCC
Q 002125 674 LPYELGNLKALEMLIVDGT-AIR-----EVPKSLNQLALLFRLKLKNCSELDGISSSIF-SLCMFKSLTSLEIIDCQNFM 746 (963)
Q Consensus 674 ~p~~~~~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~L~~~~~l~~lp~~~~-~l~~l~~L~~L~l~~~~~~~ 746 (963)
+...+...++|++|+|++| .+. .+...+...++|+.|+|++|.....-...+. .+...++|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3345667888999999998 776 3455677788999999999854321111111 11225789999999988754
Q ss_pred c----CccccCCCCCccEEEc--CCCCCc-----ccCcccCCCCCCCEEECcCCCCc
Q 002125 747 I----LPDELGNLKALETLII--DGTAMR-----EVPESLGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 747 ~----~p~~l~~l~~L~~L~L--~~n~l~-----~lp~~l~~l~~L~~L~Ls~n~l~ 792 (963)
. +...+...++|++|+| ++|.++ .+...+...++|++|+|++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3 4556777788999999 888887 25566677788999999998775
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00018 Score=80.20 Aligned_cols=173 Identities=16% Similarity=0.195 Sum_probs=100.9
Q ss_pred cccCCCcccchhhHHHHHHhHh-----------cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhh
Q 002125 193 QSYNKDLVGVEWRIKEIESLLC-----------TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE 261 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 261 (963)
...-..+.|.++.+++|.+.+. .+-..++-|.++|++|+|||.||+++++.....| +........
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~ 252 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLV 252 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGC
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhh
Confidence 3345778999999998877643 1234467889999999999999999998765443 222222211
Q ss_pred cc-CC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-------------H---HHHHHHHhccCCCC
Q 002125 262 ET-GG-IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP-------------R---QIESLIRRLDRLAS 323 (963)
Q Consensus 262 ~~-~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~~~~~ 323 (963)
.. .+ -....+.++.. .-...+++|++|+++.. . .+..++..+..+..
T Consensus 253 ~~~vGese~~ir~lF~~---------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFAL---------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp SSCSSHHHHHHHHHHHH---------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred hcccchHHHHHHHHHHH---------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 11 11 11222222221 12346899999998532 1 13345555544332
Q ss_pred --CceEEEEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHHHhhcCCC-CCCCcHHHHHHHHHHHhcCC
Q 002125 324 --GSRVIITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFCQCAFGGD-HPDASHIELTDKAIKYAQGV 388 (963)
Q Consensus 324 --gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~g~ 388 (963)
+-.||.||.....+.. ...+..++++..+.++-.++|+.+.-+-. ....+ ...+++.+.|.
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 3355557765543321 13456889999999999999876652211 11112 35566667664
No 219
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.79 E-value=0.00027 Score=74.01 Aligned_cols=153 Identities=15% Similarity=0.112 Sum_probs=84.8
Q ss_pred cccCCCcccchhhHHHHHHhHhc--C--------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhc
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT--G--------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEE 262 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 262 (963)
+...+.++|.+..++++.+++.. . ....+-+.|+|++|+||||||+.+++.....| +.+. ......
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHH
Confidence 34456789999888877665431 0 11234588999999999999999998764332 2222 111110
Q ss_pred cC--CHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----------------HHHHHHHHhccCC--C
Q 002125 263 TG--GIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------------RQIESLIRRLDRL--A 322 (963)
Q Consensus 263 ~~--~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~ 322 (963)
.. ........ .+.......+.++++|+++.. ..+..++..+... .
T Consensus 84 ~~~~~~~~~~~~---------------~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 MFVGVGASRVRD---------------MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp SCCCCCHHHHHH---------------HHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred HhhhhhHHHHHH---------------HHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00 00000111 112222345789999998321 2234444333322 2
Q ss_pred CCceEEEEeCCchhhh-cC----CcceEEEeccCCHHHHHHHHHHhh
Q 002125 323 SGSRVIITTRDKQVLK-NC----RARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 323 ~gs~IivTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
.+..||.||....... .. .....+.++..+.++-.+++..+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 3456677776543221 11 234578888888888888887665
No 220
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00054 Score=75.45 Aligned_cols=173 Identities=19% Similarity=0.241 Sum_probs=100.8
Q ss_pred ccCCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhc
Q 002125 194 SYNKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEE 262 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 262 (963)
..-.++.|.++.+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....| +.....+...
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~s 254 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQ 254 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhh
Confidence 3446788999999888776641 223457799999999999999999999765543 2222222111
Q ss_pred c-CC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----------------HHHHHHHHhccCCC--
Q 002125 263 T-GG-IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------------RQIESLIRRLDRLA-- 322 (963)
Q Consensus 263 ~-~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~~-- 322 (963)
. .+ .....+.++.. .-...+++|++|+++.. ..+..++..+..+.
T Consensus 255 k~vGesek~ir~lF~~---------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKV---------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp SSSSHHHHHHHHHHHH---------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred ccCchHHHHHHHHHHH---------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 1 11 12222233222 12356899999998631 12334444433222
Q ss_pred CCceEEEEeCCchhhhcC-----CcceEEEeccCCHHHHHHHHHHhhcCCCC-CCCcHHHHHHHHHHHhcCCc
Q 002125 323 SGSRVIITTRDKQVLKNC-----RARQIFRMKELEDADAHKLFCQCAFGGDH-PDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 323 ~gs~IivTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~P 389 (963)
.+..||.||-....+... ..+..++++..+.++-.++|..+.-+-.. ...+ ...+++.+.|.-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 344566677654443211 23567889988999999999877632221 1112 355666666653
No 221
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00068 Score=75.40 Aligned_cols=171 Identities=19% Similarity=0.216 Sum_probs=100.8
Q ss_pred CCCcccchhhHHHHHHhHh-----------cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhcc-
Q 002125 196 NKDLVGVEWRIKEIESLLC-----------TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET- 263 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~- 263 (963)
-..+.|.++.+++|.+.+. .+-..++-|.++|++|+|||.||+++++.....|- .+ ........
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi---~v-s~s~L~sk~ 283 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI---RV-IGSELVQKY 283 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE---EE-EGGGGCCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE---EE-EhHHhhccc
Confidence 4678999999999987653 13345678899999999999999999998755431 12 22111111
Q ss_pred CCH-HHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----------------HHHHHHHHhccCCC--CC
Q 002125 264 GGI-KDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------------RQIESLIRRLDRLA--SG 324 (963)
Q Consensus 264 ~~~-~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~~--~g 324 (963)
.+- ....+.++. ..-...+++|++|+++.. ..+..++..+..+. .+
T Consensus 284 vGesek~ir~lF~---------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 284 VGEGARMVRELFE---------------MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp SSHHHHHHHHHHH---------------HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred CCHHHHHHHHHHH---------------HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 111 122222222 122356899999998642 11333444443332 23
Q ss_pred ceEEEEeCCchhh-----hcCCcceEEEeccCCHHHHHHHHHHhhcCCCC-CCCcHHHHHHHHHHHhcCCc
Q 002125 325 SRVIITTRDKQVL-----KNCRARQIFRMKELEDADAHKLFCQCAFGGDH-PDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 325 s~IivTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~P 389 (963)
..||.||-....+ ..-..+..++++..+.++-.++|+.+.-+-.. ...+ ...+++.+.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 3456666544322 11235678999999999999999877632221 1112 355667777653
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.72 E-value=0.00018 Score=77.69 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHhHhc------------CCCCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 197 KDLVGVEWRIKEIESLLCT------------GFAGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+.++|.+..++.+...+.. .......+.|+|.+|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999998888877753 012245688999999999999999998763
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.66 E-value=0.0002 Score=77.31 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=42.3
Q ss_pred CCcccchhhHHHHHHhHhcC-------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 197 KDLVGVEWRIKEIESLLCTG-------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
..++|.+..++.+...+... ......+.|+|.+|+|||++|+.++......-...+.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 35789999998888777632 11235899999999999999999998764433333344
No 224
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.65 E-value=0.00045 Score=84.50 Aligned_cols=153 Identities=19% Similarity=0.226 Sum_probs=88.8
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc------CCceEEEEecchhhc----
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH------FEGSYFAQNVREAEE---- 262 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~~~~~~~~---- 262 (963)
+...+.++||+.+++++.+.|... ...-+.|+|.+|+|||++|+.+++++... ....++..+......
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 259 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC
T ss_pred cCCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccc
Confidence 344567999999999999998743 33456899999999999999999876432 133333322211100
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHc-CCceEEEEcCCCCH----------HHHHHHHHhccCCCCCceEEEEe
Q 002125 263 TGGIKDLQKELLSKLLNDRNVWNIESQLNRLA-RKKFLIVFDDVTHP----------RQIESLIRRLDRLASGSRVIITT 331 (963)
Q Consensus 263 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~~----------~~~~~l~~~l~~~~~gs~IivTT 331 (963)
........+.+ .+.+. .++.+|++|+++.. .+...++..... ..+.++|.+|
T Consensus 260 ~g~~e~~l~~~----------------~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at 322 (758)
T 1r6b_X 260 RGDFEKRFKAL----------------LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGST 322 (758)
T ss_dssp SSCHHHHHHHH----------------HHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEE
T ss_pred cchHHHHHHHH----------------HHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEe
Confidence 01111222222 22222 35789999999754 222233322221 2345666666
Q ss_pred CCchhhhcC-------CcceEEEeccCCHHHHHHHHHHhh
Q 002125 332 RDKQVLKNC-------RARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 332 R~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
......... .....+.++..+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 543321111 122468899999999988887543
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00073 Score=75.26 Aligned_cols=171 Identities=20% Similarity=0.270 Sum_probs=95.2
Q ss_pred cCCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhc-
Q 002125 195 YNKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEE- 262 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~- 262 (963)
...++.|.++.+++|.+.+.. +-..++-|.++|++|+|||+||+++++.....| +.....+...
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~ 245 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHK 245 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCS
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhcc
Confidence 346788999999988776641 334567789999999999999999998765443 2222221111
Q ss_pred cCC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----------------HHHHHHHHhccCC--CC
Q 002125 263 TGG-IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------------RQIESLIRRLDRL--AS 323 (963)
Q Consensus 263 ~~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~~ 323 (963)
..+ .....++++.. .-...+++|++|+++.. ..+..++..+..+ ..
T Consensus 246 ~~Ge~e~~ir~lF~~---------------A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRL---------------ARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp SCSHHHHHHHHHHHH---------------HHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred ccchhHHHHHHHHHH---------------HHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 111 11222222221 22356899999998421 1134444444322 23
Q ss_pred CceEEEEeCCchhh-----hcCCcceEEEeccC-CHHHHHHHHHHhhcCCC-CCCCcHHHHHHHHHHHhcCC
Q 002125 324 GSRVIITTRDKQVL-----KNCRARQIFRMKEL-EDADAHKLFCQCAFGGD-HPDASHIELTDKAIKYAQGV 388 (963)
Q Consensus 324 gs~IivTTR~~~v~-----~~~~~~~~~~l~~L-~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~g~ 388 (963)
+..||.||.....+ .....+..+++.++ +.++-.++|..+.-+.. .+..+ ...+++.+.|.
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCC
Confidence 44566677644322 11234456778655 55555667766553222 11222 35566666664
No 226
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=3.8e-05 Score=80.17 Aligned_cols=76 Identities=17% Similarity=0.272 Sum_probs=43.2
Q ss_pred CCCcEEEccCCCCCC--cCccccCCCCCccEEEcCCCCCcccCcccCCCC--CCCEEECcCCCCcc-cCc-------ccc
Q 002125 732 KSLTSLEIIDCQNFM--ILPDELGNLKALETLIIDGTAMREVPESLGQLS--SVKNLVLTNNNLKR-LPE-------SLN 799 (963)
Q Consensus 732 ~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~--~L~~L~Ls~n~l~~-lp~-------~l~ 799 (963)
++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.++.+. .+..+. +|++|+|++|.+.. +|. .+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 344444444444333 23344455666777777777666552 233333 78888888887763 442 356
Q ss_pred CCCCCCEEE
Q 002125 800 QLSSLEYLQ 808 (963)
Q Consensus 800 ~l~~L~~L~ 808 (963)
.+++|+.||
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 677777765
No 227
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=0.00056 Score=73.23 Aligned_cols=146 Identities=12% Similarity=0.120 Sum_probs=90.8
Q ss_pred cchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh---ccCCceEEEEecchhhccCCHHHHHHHHHHhh
Q 002125 201 GVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS---RHFEGSYFAQNVREAEETGGIKDLQKELLSKL 277 (963)
Q Consensus 201 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 277 (963)
|-++.++.+...+..+. .+...++|++|+||||+|+.+++... ...+....+... ....++..+ +++....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDI-RTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHHH-HHHHHHH
Confidence 34556777888876543 67889999999999999999987532 112333444210 112232222 2233333
Q ss_pred hcCCCCCCHHHHHHHHcCCceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEEEeCCc-hhhhcCCcceEEEeccCCHH
Q 002125 278 LNDRNVWNIESQLNRLARKKFLIVFDDVTH--PRQIESLIRRLDRLASGSRVIITTRDK-QVLKNCRARQIFRMKELEDA 354 (963)
Q Consensus 278 ~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~l~~L~~~ 354 (963)
.... ..+++-++|+|+++. .+...+|+..+....+.+.+|++|.+. .+....... .+++.+++.+
T Consensus 75 ~~~p-----------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 75 NYSP-----------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp TSCC-----------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred hhcc-----------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 2111 124567899999975 345667776666556678887777544 344433334 8999999999
Q ss_pred HHHHHHHHhh
Q 002125 355 DAHKLFCQCA 364 (963)
Q Consensus 355 ea~~Lf~~~a 364 (963)
+..+.+.+.+
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987776
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.53 E-value=0.00019 Score=75.60 Aligned_cols=49 Identities=22% Similarity=0.110 Sum_probs=34.7
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+.++|.+..++++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4689999999888776653222234678999999999999999987543
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.52 E-value=0.00065 Score=82.96 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=83.6
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC------CceEEEEecchhhccCCH
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGI 266 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~ 266 (963)
+...+.+|||+++++++...|.... ..-+.++|.+|+|||++|+.+++.+.... ...++..+.
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred hCCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 3445679999999999999997532 23478999999999999999999864321 122221111
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHH-HHHHcCCceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchhh---hcC--
Q 002125 267 KDLQKELLSKLLNDRNVWNIESQ-LNRLARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVL---KNC-- 340 (963)
Q Consensus 267 ~~l~~~ll~~l~~~~~~~~~~~l-~~~L~~k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~---~~~-- 340 (963)
.....+ .....+..+ ......++.+|++| ...+....+.+.+. ....++|.||...... ...
T Consensus 245 -------g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~a 312 (758)
T 3pxi_A 245 -------GTKYRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAA 312 (758)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSH
T ss_pred -------cccccc-hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHH
Confidence 000000 011222222 22233567899999 22222233333332 2345666666544310 000
Q ss_pred --CcceEEEeccCCHHHHHHHHHHhh
Q 002125 341 --RARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 341 --~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
.....+.++.++.++..+++....
T Consensus 313 l~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 313 LERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112579999999999999998654
No 230
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.51 E-value=0.0018 Score=73.34 Aligned_cols=172 Identities=17% Similarity=0.182 Sum_probs=97.0
Q ss_pred CCCcccchhhHHHHHHhHhc----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhcc-C
Q 002125 196 NKDLVGVEWRIKEIESLLCT----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET-G 264 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~-~ 264 (963)
...++|.+..++++.+++.. +..-.+-|.|+|++|+|||+||+.++......| +.+ +..+.... .
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~i-s~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHI-SGSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEE-EGGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeC-CHHHHHHHHh
Confidence 45688998888777766541 111234488999999999999999998764332 122 22221111 1
Q ss_pred CHH-HHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----------------HHHHHHHHhccCC--CCCc
Q 002125 265 GIK-DLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------------RQIESLIRRLDRL--ASGS 325 (963)
Q Consensus 265 ~~~-~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~--~~gs 325 (963)
+.. .-.+ ..+.......+.+|+||+++.. ..+..++..+..+ ..+.
T Consensus 91 g~~~~~~r---------------~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 91 GVGAARVR---------------DLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp THHHHHHH---------------HHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred cccHHHHH---------------HHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 110 0011 1222334467899999998542 1234444433322 2355
Q ss_pred eEEEEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHhcCCc
Q 002125 326 RVIITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFCQCAFGGDHPDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 326 ~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g~P 389 (963)
.||.||.....+.. ......+.++..+.++-.+++..++-......+. ....+++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 67777766544321 1234578899999888888887766322211111 1344677777766
No 231
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.46 E-value=3.9e-05 Score=81.11 Aligned_cols=154 Identities=16% Similarity=0.104 Sum_probs=83.6
Q ss_pred ccCCCcccchhhHHHHHHhHhc----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhcc
Q 002125 194 SYNKDLVGVEWRIKEIESLLCT----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET 263 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 263 (963)
.....++|.+..++++.+.+.. +....+-+.|+|++|+|||+||+.+++.....|-. + +.......
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~~~ 83 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFIEM 83 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTTTS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHHHh
Confidence 3457799999998888876651 11222347899999999999999999876544321 1 11110000
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHHH-----------------HHHHHHhccCCC---C
Q 002125 264 GGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPRQ-----------------IESLIRRLDRLA---S 323 (963)
Q Consensus 264 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~-----------------~~~l~~~l~~~~---~ 323 (963)
..+.........+......++.+|++|+++.... +..++..+.... .
T Consensus 84 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 84 -------------FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp -------------CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred -------------hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 0000000001122222335678999999964311 222332222211 2
Q ss_pred CceEEEEeCCchhhh-----cCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 324 GSRVIITTRDKQVLK-----NCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 324 gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
...||.||....... .......+.++..+.++..+++...+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 245666776553221 11223467788888888888876655
No 232
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=7.8e-05 Score=77.80 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=35.3
Q ss_pred CCCCCCeeecccccccc--cCCcccCCCCCCcEEEecCccccccCccccCCC--CCcEEEccCCCCCC
Q 002125 656 MFKSLTSLEIIDCQNFM--MLPYELGNLKALEMLIVDGTAIREVPKSLNQLA--LLFRLKLKNCSELD 719 (963)
Q Consensus 656 ~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~--~L~~L~L~~~~~l~ 719 (963)
++++|++|+|++|.+.+ .+|..+..+++|+.|+|++|.|+.+ ..+..+. +|+.|+|++|...+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCcc
Confidence 35667777777766655 3445555666666666666666644 2233333 55555555554433
No 233
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.38 E-value=6.4e-05 Score=70.95 Aligned_cols=47 Identities=17% Similarity=0.073 Sum_probs=33.4
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
-.++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35789999999888877531112234789999999999999998764
No 234
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.36 E-value=0.00035 Score=75.03 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=37.6
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+.++|++..++++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999999888876422233457899999999999999998854
No 235
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.36 E-value=0.0003 Score=66.74 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=27.4
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
-..++|+|..|+|||||++.++......-...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 457899999999999999999987654312255554
No 236
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.34 E-value=0.0058 Score=67.83 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=90.5
Q ss_pred cccCCCCCCcEEEecCccccccCc-cccCCCCCcEEEccCCCCCCCCCcccccccCCCCCcEEEccCCCCCCcCccccCC
Q 002125 676 YELGNLKALEMLIVDGTAIREVPK-SLNQLALLFRLKLKNCSELDGISSSIFSLCMFKSLTSLEIIDCQNFMILPDELGN 754 (963)
Q Consensus 676 ~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~L~~~~~l~~lp~~~~~l~~l~~L~~L~l~~~~~~~~~p~~l~~ 754 (963)
..+....+|+.+.+..+ +..++. .+.++.+|+.+.+..+ +..+....+ .++.+|+.+.+..+ ....-...|.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF--~~~~~l~~i~l~~~-i~~i~~~aF~~ 284 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLL--QNCTALKTLNFYAK-VKTVPYLLCSG 284 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTT--TTCTTCCEEEECCC-CSEECTTTTTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCcccc--ceeehhcccccccc-ceecccccccc
Confidence 34556677777777543 444433 4677888888888654 334433322 23678888888543 33333346888
Q ss_pred CCCccEEEcCCCCCcccC-cccCCCCCCCEEECcCCCCcccCc-cccCCCCCCEEEec
Q 002125 755 LKALETLIIDGTAMREVP-ESLGQLSSVKNLVLTNNNLKRLPE-SLNQLSSLEYLQLH 810 (963)
Q Consensus 755 l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~ 810 (963)
+++|+.+.+.++.++.++ ..|.++.+|+.+.|.. +++.|+. .|.+|++|+.+.+.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEEC
Confidence 999999999999898886 4689999999999975 4888874 58999999988874
No 237
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.32 E-value=0.00013 Score=70.60 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=16.9
Q ss_pred CCCeeecccccccccCCcccCCCCCCcEEEecCc
Q 002125 659 SLTSLEIIDCQNFMMLPYELGNLKALEMLIVDGT 692 (963)
Q Consensus 659 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~L~~n 692 (963)
+|+.|++++|.+...--..+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4666666666533322223445555555555554
No 238
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.27 E-value=0.0021 Score=73.28 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=39.0
Q ss_pred CCCcccchhhHHHHHHhHh---cCCCCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 196 NKDLVGVEWRIKEIESLLC---TGFAGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.+.++|.+..++.+..++. .+....+-+.++|++|+|||++|+.+++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4789999999887655543 3333345688999999999999999998764
No 239
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.27 E-value=0.0066 Score=63.14 Aligned_cols=152 Identities=15% Similarity=0.145 Sum_probs=80.2
Q ss_pred cCCCcccchhhHHHHHHhHhc--C--------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccC
Q 002125 195 YNKDLVGVEWRIKEIESLLCT--G--------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETG 264 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 264 (963)
..++++|.+...+++.++... . -.-.+-+.|+|++|+||||||+.++..... ..+.+. ........
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~ 89 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF 89 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHHH
Confidence 345678877776666554331 0 011122899999999999999999986542 223332 11110000
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHH-cCCceEEEEcCCCCH----------------HHHHHHHHhccCCC--CCc
Q 002125 265 GIKDLQKELLSKLLNDRNVWNIESQLNRL-ARKKFLIVFDDVTHP----------------RQIESLIRRLDRLA--SGS 325 (963)
Q Consensus 265 ~~~~l~~~ll~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~~--~gs 325 (963)
...... .+..+.+.. ...+.++++|+++.. ..+..+...+.... ...
T Consensus 90 -~~~~~~-------------~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 90 -VGVGAA-------------RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp -TTHHHH-------------HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred -hhHHHH-------------HHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 000000 011122222 235689999998422 11233433333221 223
Q ss_pred eEEEEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHHHhh
Q 002125 326 RVIITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 326 ~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
.++.||.....+.. ......++++..+.++-.+++...+
T Consensus 156 i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 156 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred EEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 44556665544321 1245678899999988888887665
No 240
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.24 E-value=0.00015 Score=70.14 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=43.0
Q ss_pred CCcEEEccCCCCCCcCccccCCCCCccEEEcCCCC-Cccc-CcccCCC----CCCCEEECcCC-CCcccC-ccccCCCCC
Q 002125 733 SLTSLEIIDCQNFMILPDELGNLKALETLIIDGTA-MREV-PESLGQL----SSVKNLVLTNN-NLKRLP-ESLNQLSSL 804 (963)
Q Consensus 733 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~L~~n~-l~~l-p~~l~~l----~~L~~L~Ls~n-~l~~lp-~~l~~l~~L 804 (963)
.|+.|++++|.+...--..+.++++|+.|+|++|. ++.- -..+..+ ++|++|+|++| +++.-- ..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555554332222234455566666666553 3310 0112222 35777777776 465311 235567777
Q ss_pred CEEEeccCCCCCCce
Q 002125 805 EYLQLHLRSPRKLTS 819 (963)
Q Consensus 805 ~~L~L~~~~~~~L~~ 819 (963)
+.|+|++ |+.++.
T Consensus 142 ~~L~L~~--c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSD--LPGVKE 154 (176)
T ss_dssp CEEEEES--CTTCCC
T ss_pred CEEECCC--CCCCCc
Confidence 7777776 665553
No 241
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.20 E-value=0.0008 Score=72.30 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=34.9
Q ss_pred hHHHHHHhHhcCCC-CeEEEEEEccCCCChhhHHHHHHHHHh-ccCCceEEEE
Q 002125 205 RIKEIESLLCTGFA-GVYILGIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQ 255 (963)
Q Consensus 205 ~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~ 255 (963)
.++.+.+++..... ..+.+.|+|.+|+|||+||.++++... .+...+.++.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34445556653222 246788999999999999999999876 5544455554
No 242
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.16 E-value=0.0023 Score=78.11 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=85.5
Q ss_pred CCcccchhhHHHHHHhHhcCC-------CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTGF-------AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL 269 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 269 (963)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.....-...+.+. ..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 568999999988887776211 12347899999999999999999987644333344443 33322221111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHc-CCceEEEEcCCCCH--HHHHHHHHhccC-----------CCCCceEEEEeCCc-
Q 002125 270 QKELLSKLLNDRNVWNIESQLNRLA-RKKFLIVFDDVTHP--RQIESLIRRLDR-----------LASGSRVIITTRDK- 334 (963)
Q Consensus 270 ~~~ll~~l~~~~~~~~~~~l~~~L~-~k~~LlVLDdv~~~--~~~~~l~~~l~~-----------~~~gs~IivTTR~~- 334 (963)
...+.+.++ ...-+|+||+++.. +....|...+.. .....+||+||...
T Consensus 568 ----------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 568 ----------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp -------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred ----------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 001111121 23458999999643 344455444322 12356888888731
Q ss_pred ----------------hhhhcCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 335 ----------------QVLKNCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 335 ----------------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
.... ..+.++.+.+++.++..+++....
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHH
Confidence 1111 123588899999988888776543
No 243
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.11 E-value=0.013 Score=61.87 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=82.2
Q ss_pred cccCCCcccchhhHHHHHHhHhc--C--------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhc
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCT--G--------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEE 262 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 262 (963)
....++++|.+..++++.++... . -.-.+-+.|+|++|+||||||+.++.... ...+.+.. .....
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~-~~~~~ 111 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---VPFITASG-SDFVE 111 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---CCEEEEEH-HHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---CCEEEecH-HHHHH
Confidence 33456788888877776655431 0 01112389999999999999999998764 22233321 11100
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH-cCCceEEEEcCCCCH----------------HHHHHHHHhccCCCC--
Q 002125 263 TGGIKDLQKELLSKLLNDRNVWNIESQLNRL-ARKKFLIVFDDVTHP----------------RQIESLIRRLDRLAS-- 323 (963)
Q Consensus 263 ~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~~~-- 323 (963)
.. ...... .+..+.+.. ...+.++++|+++.. ..+..+...+.....
T Consensus 112 ~~-~~~~~~-------------~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 112 MF-VGVGAA-------------RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp ST-TTHHHH-------------HHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred HH-hhHHHH-------------HHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 00 000000 011122222 245689999998421 112334333332221
Q ss_pred CceEEEEeCCchhhh-----cCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 324 GSRVIITTRDKQVLK-----NCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 324 gs~IivTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
...++.||.....+. .......++++..+.++-.+++..++
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 234455666554432 11244578899899988888887665
No 244
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.07 E-value=0.0033 Score=75.51 Aligned_cols=171 Identities=17% Similarity=0.208 Sum_probs=97.6
Q ss_pred CCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchh-hcc
Q 002125 196 NKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREA-EET 263 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-~~~ 263 (963)
.+.+.|.++.+++|.+++.. +-..++-|.++|++|+|||+||+++++....+ ++..+..+. +..
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhccc
Confidence 35688999999988877641 22346789999999999999999999765433 232222111 111
Q ss_pred CC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-------------HHHHHHHHhccCCC--CCceE
Q 002125 264 GG-IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP-------------RQIESLIRRLDRLA--SGSRV 327 (963)
Q Consensus 264 ~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~~--~gs~I 327 (963)
.+ .....+.++. ......+.+|++|+++.. .....++..+.... .+..|
T Consensus 279 ~gese~~lr~lF~---------------~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 279 AGESESNLRKAFE---------------EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp TTHHHHHHHHHHH---------------HHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred chHHHHHHHHHHH---------------HHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 11 1111222222 222457899999998542 11334443332222 23345
Q ss_pred EEEeCCchhhh-c----CCcceEEEeccCCHHHHHHHHHHhhcCCCC-CCCcHHHHHHHHHHHhcCCc
Q 002125 328 IITTRDKQVLK-N----CRARQIFRMKELEDADAHKLFCQCAFGGDH-PDASHIELTDKAIKYAQGVP 389 (963)
Q Consensus 328 ivTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~g~P 389 (963)
|.||.....+. . ...++.++++..+.++-.++|..+.-+... ...+ ...+++.+.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 55665443321 1 124568899999999999999876632211 1111 455667776654
No 245
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.02 E-value=0.0024 Score=68.04 Aligned_cols=30 Identities=40% Similarity=0.643 Sum_probs=25.0
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
..++.+.++|++|+|||+||+++++.....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345678899999999999999999987433
No 246
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.01 E-value=0.0011 Score=58.35 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=51.8
Q ss_pred CcccEEEcCccccccCchHHHHHHHHhhCCCceEEeCCCCCCccchHHHHHHhhhcceeeeeeccCccchhhhHHHHHHH
Q 002125 25 NKYGVFLSFRGEDTRDNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDELSKI 104 (963)
Q Consensus 25 ~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~~El~~~ 104 (963)
.+|.|||||+.+| . .+.|...|.+.|+. |.| +.|+.|++.||+.++....|.||..|+..+
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 4799999999998 2 34555555555665 333 668899999999998888999999999776
Q ss_pred HHhhhcCCcEEEeE
Q 002125 105 LECKHDYGQIVIPV 118 (963)
Q Consensus 105 ~~~~~~~~~~v~pv 118 (963)
.+ .+..++-|
T Consensus 64 ~~----~gkpIigV 73 (111)
T 1eiw_A 64 RK----SSKPIITV 73 (111)
T ss_dssp TT----TTCCEEEE
T ss_pred HH----cCCCEEEE
Confidence 53 34445444
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.96 E-value=0.014 Score=66.53 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=84.5
Q ss_pred ccCCCcccchhhHHHHHHhHhc--C--------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhcc
Q 002125 194 SYNKDLVGVEWRIKEIESLLCT--G--------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET 263 (963)
Q Consensus 194 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 263 (963)
...++++|.+..++++.++... . -.-.+-+.|+|++|+|||+||+.++..... ..+.+. .......
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~-g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---CEEEEE-GGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEe-hhHHHHh
Confidence 3456788988887777665431 1 011233899999999999999999987542 223332 2111111
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH----------------HHHHHHHHhccCCC--CCc
Q 002125 264 GGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP----------------RQIESLIRRLDRLA--SGS 325 (963)
Q Consensus 264 ~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~~--~gs 325 (963)
. ....... +..+.... -...+.++++|+++.. ..+..++..+..+. .+.
T Consensus 104 ~-~g~~~~~-v~~lfq~a-----------~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~v 170 (499)
T 2dhr_A 104 F-VGVGAAR-VRDLFETA-----------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 170 (499)
T ss_dssp C-TTHHHHH-HHHHTTTS-----------SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCC
T ss_pred h-hhhHHHH-HHHHHHHH-----------HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccE
Confidence 0 0000001 11111100 0123579999998421 12344544444222 234
Q ss_pred eEEEEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHHHhh
Q 002125 326 RVIITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 326 ~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
.|+.||.....+.. ...+..+.++..+.++-.+++..++
T Consensus 171 iviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 171 VVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp EEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred EEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 55666666544321 1234588999999999999887765
No 248
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.94 E-value=0.009 Score=62.82 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=69.5
Q ss_pred EEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH-cCCceEEE
Q 002125 223 LGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRL-ARKKFLIV 301 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L-~~k~~LlV 301 (963)
++|+|++|+||||||+.++..... ..+.+. ..+.... ......+. + ..+.+.. ...+.+++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~~-~~~~~~~~-i------------~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLNM-YVGESERA-V------------RQVFQRAKNSAPCVIF 108 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCSS-TTHHHHHH-H------------HHHHHHHHHTCSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHhh-hhhHHHHH-H------------HHHHHHHHhcCCCeEe
Confidence 899999999999999999986533 233332 1111111 11111111 1 1111221 34578999
Q ss_pred EcCCCCH-------------HHHHHHHHhccCC--CCCceEEEEeCCchhhhc-----CCcceEEEeccCCHHHHHHHHH
Q 002125 302 FDDVTHP-------------RQIESLIRRLDRL--ASGSRVIITTRDKQVLKN-----CRARQIFRMKELEDADAHKLFC 361 (963)
Q Consensus 302 LDdv~~~-------------~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~ 361 (963)
+|+++.. .....+...+... ....-++.+|....++.. ...+..+.++..+.++-.+++.
T Consensus 109 ~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 109 FDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILK 188 (274)
T ss_dssp EETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred eehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHH
Confidence 9998642 1123333333221 123445667766655322 1345788899999999999987
Q ss_pred Hhh
Q 002125 362 QCA 364 (963)
Q Consensus 362 ~~a 364 (963)
...
T Consensus 189 ~~~ 191 (274)
T 2x8a_A 189 TIT 191 (274)
T ss_dssp HHT
T ss_pred HHH
Confidence 765
No 249
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.92 E-value=0.0047 Score=68.47 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998763
No 250
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.74 E-value=0.012 Score=68.38 Aligned_cols=158 Identities=15% Similarity=0.202 Sum_probs=78.5
Q ss_pred CcccchhhHHHHHHhHhc----CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHH
Q 002125 198 DLVGVEWRIKEIESLLCT----GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKEL 273 (963)
Q Consensus 198 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 273 (963)
.++|.++..+.+.+.+.. .......+.|+|++|+||||||+.++......|-. + ++........+.......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~---i-~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR---I-SLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE---E-CCCC--------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE---E-EecccchhhhhhhHHHHH
Confidence 478888877777554431 12245689999999999999999999877443321 1 111100000000000000
Q ss_pred HHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCHHH------HHHHHHhccCCC---------------CCceEEEEeC
Q 002125 274 LSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHPRQ------IESLIRRLDRLA---------------SGSRVIITTR 332 (963)
Q Consensus 274 l~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~~~------~~~l~~~l~~~~---------------~gs~IivTTR 332 (963)
... ................-+++||+++.... ...++..+.... ....||.||.
T Consensus 158 ig~-----~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN 232 (543)
T 3m6a_A 158 VGA-----MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN 232 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS
T ss_pred hcc-----CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC
Confidence 000 00112222222222344888999875321 233333332110 2345666666
Q ss_pred Cchhhh-c-CCcceEEEeccCCHHHHHHHHHHhh
Q 002125 333 DKQVLK-N-CRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 333 ~~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
...... . .....++++.+++.++-.+++..+.
T Consensus 233 ~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 233 NLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp STTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred ccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 543211 0 0112478899999999988887654
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.53 E-value=0.0092 Score=72.80 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=85.6
Q ss_pred CCCcccchhhHHHHHHhHhc-----------CCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhcc-
Q 002125 196 NKDLVGVEWRIKEIESLLCT-----------GFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET- 263 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~- 263 (963)
...++|.+..+++|.+++.. +-.....|.|+|.+|+||||||+.++......| +.+. ..+....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhhh
Confidence 46799999999999888763 223446789999999999999999987654332 2222 1111100
Q ss_pred CC-HHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEEEEcCCCCH-------------HHHHHHHHhccCC--CCCceE
Q 002125 264 GG-IKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLIVFDDVTHP-------------RQIESLIRRLDRL--ASGSRV 327 (963)
Q Consensus 264 ~~-~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~~--~~gs~I 327 (963)
.+ ....... .+.......+.++++|+++.. .....+...+... ..+..+
T Consensus 279 ~g~~~~~l~~---------------vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 279 AGESESNLRK---------------AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp TTHHHHHHHH---------------HHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred hhhHHHHHHH---------------HHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 00 0111111 122223456789999998321 1123333332221 234455
Q ss_pred EEEeCCchhhhc-C----CcceEEEeccCCHHHHHHHHHHhh
Q 002125 328 IITTRDKQVLKN-C----RARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 328 ivTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
|.||.....+.. . .....+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666655422211 1 223567788888888888887665
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.42 E-value=0.073 Score=64.79 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHhHhcC-------CCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTG-------FAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 56899999998887776521 1234578999999999999999999877
No 253
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.24 E-value=0.078 Score=59.07 Aligned_cols=36 Identities=25% Similarity=0.142 Sum_probs=28.5
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
...+|.++|.+|+||||++..++..+..+-..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478999999999999999999998776653334333
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.22 E-value=0.021 Score=70.45 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=39.0
Q ss_pred CCcccchhhHHHHHHhHhcC-------CCCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 197 KDLVGVEWRIKEIESLLCTG-------FAGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
..++|.+..++.+...+... ......+.|+|++|+|||++|+.+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35799999998887777521 112367899999999999999999987643
No 255
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.09 E-value=0.0037 Score=61.25 Aligned_cols=113 Identities=21% Similarity=0.144 Sum_probs=60.1
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhh--cCCCC--------------C
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLL--NDRNV--------------W 284 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~--~~~~~--------------~ 284 (963)
..|.|++-.|.||||.|-..+-+...+--.+.++.-.... ...+-..+.+.+.-.+. +.... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4566777777999999999988776665555666433211 11222233332200000 00000 1
Q ss_pred CHHHHHHHHcCC-ceEEEEcCCCCH-----HHHHHHHHhccCCCCCceEEEEeCCc
Q 002125 285 NIESQLNRLARK-KFLIVFDDVTHP-----RQIESLIRRLDRLASGSRVIITTRDK 334 (963)
Q Consensus 285 ~~~~l~~~L~~k-~~LlVLDdv~~~-----~~~~~l~~~l~~~~~gs~IivTTR~~ 334 (963)
.++..++.+... -=|||||++... -..+.+...+..-.....||+|+|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 112444555444 449999998332 11233333333335678899999986
No 256
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.03 E-value=0.02 Score=57.74 Aligned_cols=44 Identities=27% Similarity=0.244 Sum_probs=30.1
Q ss_pred HHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 209 IESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 209 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
|..++..+-..-.+++|.|.+|+||||||..++. ..-..++|+.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 3344432223345899999999999999999987 2234566665
No 257
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.82 E-value=0.0042 Score=61.19 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=49.6
Q ss_pred CCCcEEEccCCCCCC----cCccccCCCCCccEEEcCCCCCc-----ccCcccCCCCCCCEEECcCC---CCc-----cc
Q 002125 732 KSLTSLEIIDCQNFM----ILPDELGNLKALETLIIDGTAMR-----EVPESLGQLSSVKNLVLTNN---NLK-----RL 794 (963)
Q Consensus 732 ~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n---~l~-----~l 794 (963)
+.|+.|+|++|.+.. .+.+.+..-+.|+.|+|++|.|. .+-..+..-+.|+.|+|++| .+. .|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 455666666555432 13334445567888888888876 34566777777888888865 333 23
Q ss_pred CccccCCCCCCEEEecc
Q 002125 795 PESLNQLSSLEYLQLHL 811 (963)
Q Consensus 795 p~~l~~l~~L~~L~L~~ 811 (963)
-+.+..-++|..|++++
T Consensus 150 a~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 150 MMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHCSSCCEEECCC
T ss_pred HHHHHhCCCcCeEeccC
Confidence 44555666777777654
No 258
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.72 E-value=0.0076 Score=59.31 Aligned_cols=80 Identities=21% Similarity=0.174 Sum_probs=59.6
Q ss_pred CCCcEEEccCC-CCCC----cCccccCCCCCccEEEcCCCCCc-----ccCcccCCCCCCCEEECcCCCCc-----ccCc
Q 002125 732 KSLTSLEIIDC-QNFM----ILPDELGNLKALETLIIDGTAMR-----EVPESLGQLSSVKNLVLTNNNLK-----RLPE 796 (963)
Q Consensus 732 ~~L~~L~l~~~-~~~~----~~p~~l~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~Ls~n~l~-----~lp~ 796 (963)
+.|+.|+|++| .+.. .+-+.+..-+.|+.|+|++|.+. .+...+..-+.|+.|+|++|.|. .|-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45666776654 3221 13455677789999999999997 45566777789999999999998 3556
Q ss_pred cccCCCCCCEEEecc
Q 002125 797 SLNQLSSLEYLQLHL 811 (963)
Q Consensus 797 ~l~~l~~L~~L~L~~ 811 (963)
.+..-+.|+.|+|++
T Consensus 121 aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 121 STLVTQSIVEFKADN 135 (197)
T ss_dssp HTTTTCCCSEEECCC
T ss_pred HHhhCCceeEEECCC
Confidence 677778899999975
No 259
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.72 E-value=0.025 Score=60.70 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=28.3
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
..++++|+|.+|+||||++..++..+...-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999999999998776543334444
No 260
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.71 E-value=0.062 Score=58.48 Aligned_cols=155 Identities=12% Similarity=-0.028 Sum_probs=98.8
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh-ccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKK 297 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~ 297 (963)
-.++..++|..|.||++.|..+...+. ..|+....+. . ....++.++...+.. .-+-+++
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~---------------~plf~~~ 77 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---DPNTDWNAIFSLCQA---------------MSLFASR 77 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---CTTCCHHHHHHHHHH---------------HHHCCSC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---cCCCCHHHHHHHhcC---------------cCCccCC
Confidence 456889999999999999999988654 3454322221 1 112445444433321 1133567
Q ss_pred eEEEEcCCCC---HHHHHHHHHhccCCCCCceEEEEeCC-------chhhhc-CCcceEEEeccCCHHHHHHHHHHhhcC
Q 002125 298 FLIVFDDVTH---PRQIESLIRRLDRLASGSRVIITTRD-------KQVLKN-CRARQIFRMKELEDADAHKLFCQCAFG 366 (963)
Q Consensus 298 ~LlVLDdv~~---~~~~~~l~~~l~~~~~gs~IivTTR~-------~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 366 (963)
-++|+|+++. .+..+.+...+....+++.+|++|-. ..+... .....+++..+++.++..+.+.+.+-.
T Consensus 78 kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 78 QTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp EEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 7889999865 35567777766655678888777643 123333 234468999999999999888776622
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCchhHHH
Q 002125 367 GDHPDASHIELTDKAIKYAQGVPLALKV 394 (963)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~g~PLal~~ 394 (963)
.. ..-..+.+..+++.++|...++..
T Consensus 158 ~g--~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 158 LN--LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TT--CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred cC--CCCCHHHHHHHHHHhchHHHHHHH
Confidence 11 122346678889999998876654
No 261
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.67 E-value=0.0073 Score=65.59 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=39.6
Q ss_pred cCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 195 YNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 195 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
..+.++|++..++.+...+..+ .-+.++|.+|+|||+||+.+++....
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred hccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3467999999999988877653 25889999999999999999987643
No 262
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.62 E-value=0.13 Score=49.84 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988654
No 263
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.55 E-value=0.015 Score=61.48 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCChhhHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
-+++.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 467789999999999999999876
No 264
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.54 E-value=0.0085 Score=71.96 Aligned_cols=150 Identities=19% Similarity=0.309 Sum_probs=78.5
Q ss_pred CCcccchhhHHHHHHhHhcC-----------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCC
Q 002125 197 KDLVGVEWRIKEIESLLCTG-----------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGG 265 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 265 (963)
..+.|.++..++|.+.+... ....+-|.++|++|.|||.+|+++++..... |+. +..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~-v~~------ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS-IKG------ 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE-CCH------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE-ecc------
Confidence 56778888888887766421 1234568899999999999999999865332 222 110
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHH-cCCceEEEEcCCCCH----------------HHHHHHHHhccCCCCCc--e
Q 002125 266 IKDLQKELLSKLLNDRNVWNIESQLNRL-ARKKFLIVFDDVTHP----------------RQIESLIRRLDRLASGS--R 326 (963)
Q Consensus 266 ~~~l~~~ll~~l~~~~~~~~~~~l~~~L-~~k~~LlVLDdv~~~----------------~~~~~l~~~l~~~~~gs--~ 326 (963)
. ++++...++.. ..+..+.+.. +..+++|++|+++.. ..+..|+..+....... -
T Consensus 545 -~----~l~s~~vGese-~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~ 618 (806)
T 3cf2_A 545 -P----ELLTMWFGESE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618 (806)
T ss_dssp -H----HHHTTTCSSCH-HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEE
T ss_pred -c----hhhccccchHH-HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 0 11111111100 1112222222 356899999998531 01445555554433333 2
Q ss_pred EEEEeCCchh-----hhcCCcceEEEeccCCHHHHHHHHHHhh
Q 002125 327 VIITTRDKQV-----LKNCRARQIFRMKELEDADAHKLFCQCA 364 (963)
Q Consensus 327 IivTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 364 (963)
||.||-.... +..-..++.+.++..+.++-.++|+.+.
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred EEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 3334443322 2111345678888888888888886665
No 265
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.53 E-value=0.071 Score=57.79 Aligned_cols=50 Identities=22% Similarity=0.209 Sum_probs=36.6
Q ss_pred HHHHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 206 IKEIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 206 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
...|...|. .+-..-+++.|.|.+|+||||||..++......-..++|++
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 445666664 33334579999999999999999999987665444567775
No 266
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.48 E-value=0.023 Score=52.02 Aligned_cols=51 Identities=27% Similarity=0.404 Sum_probs=36.0
Q ss_pred EEEcCCCCCc--ccCcccCCCCCCCEEECcCCCCcccCcc-ccCCCCCCEEEeccC
Q 002125 760 TLIIDGTAMR--EVPESLGQLSSVKNLVLTNNNLKRLPES-LNQLSSLEYLQLHLR 812 (963)
Q Consensus 760 ~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~~ 812 (963)
.++.+++.++ .+|..+. ++|+.|+|++|+|+.||.. +..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5677777777 7776542 4688888888888888754 566777777766654
No 267
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.41 E-value=0.047 Score=57.90 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=28.3
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
..+++++|.+|+||||++..++..+...-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 679999999999999999999987765534444443
No 268
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.39 E-value=0.031 Score=57.65 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=29.3
Q ss_pred HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 206 IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 206 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
..-+..++.........+.++|++|.|||.+|.++++.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34567777643244567999999999999999999875
No 269
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.28 E-value=0.05 Score=54.82 Aligned_cols=106 Identities=20% Similarity=0.081 Sum_probs=60.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC---CCHHHHHHHHcC-
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV---WNIESQLNRLAR- 295 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~l~~~L~~- 295 (963)
-.++.|+|..|+||||++..++++...+-..+..+...... . +. .++.+.++..... ...+.+.+.+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~----~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SI----RNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GC----SSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HH----HHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 46889999999999999999998877665455554322110 0 10 1122222211111 222344444433
Q ss_pred ----CceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEEEeCCch
Q 002125 296 ----KKFLIVFDDVTH--PRQIESLIRRLDRLASGSRVIITTRDKQ 335 (963)
Q Consensus 296 ----k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~ 335 (963)
+.-+||+|.+.. .++++.+....+ .|-.||+|.++..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 345999999853 345554433222 3788999999543
No 270
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.27 E-value=0.091 Score=58.78 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=34.5
Q ss_pred HHHHHHhHhcC-------CCCeEEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEE
Q 002125 206 IKEIESLLCTG-------FAGVYILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFA 254 (963)
Q Consensus 206 ~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 254 (963)
.+++.+++... ....++|.++|.+|+||||+|..++..+..+ -..+..+
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv 135 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 44556666421 1346899999999999999999999887765 3334443
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.25 E-value=0.062 Score=57.14 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=34.9
Q ss_pred hhHHHHHHhHhcC------CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 204 WRIKEIESLLCTG------FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 204 ~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
.-.++|.+.+... .....+++|+|.+|+||||++..++..+...-..+.++
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 3345555665422 13467999999999999999999998776543334443
No 272
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.25 E-value=0.0065 Score=59.67 Aligned_cols=108 Identities=14% Similarity=-0.031 Sum_probs=52.7
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLI 300 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~Ll 300 (963)
+++.|+|..|+||||++..++.+...+-..+.++..... ...+...+...+-... ......+.+.+.+.+.++.-+|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d--~r~~~~~i~s~~g~~~-~~~~~~~~~~~~~~~~~~~dvv 80 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKID--SRYHSTMIVSHSGNGV-EAHVIERPEEMRKYIEEDTRGV 80 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-------CCCEECC----CE-ECEEESSGGGGGGGCCTTEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccc--cccCcccEEecCCCce-eeEEECCHHHHHHHhcCCCCEE
Confidence 478899999999999998887765433223333321100 0000000000000000 0000012222333333455699
Q ss_pred EEcCCCCH--HHHHHHHHhccCCCCCceEEEEeCCc
Q 002125 301 VFDDVTHP--RQIESLIRRLDRLASGSRVIITTRDK 334 (963)
Q Consensus 301 VLDdv~~~--~~~~~l~~~l~~~~~gs~IivTTR~~ 334 (963)
++|.+... +.++.+....+ .|..|++|.+..
T Consensus 81 iIDE~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 81 FIDEVQFFNPSLFEVVKDLLD---RGIDVFCAGLDL 113 (184)
T ss_dssp EECCGGGSCTTHHHHHHHHHH---TTCEEEEEEESB
T ss_pred EEECcccCCHHHHHHHHHHHH---CCCCEEEEeecc
Confidence 99998543 34444433332 277899998854
No 273
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.25 E-value=0.029 Score=55.83 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=33.6
Q ss_pred chhhHHHHHHhHhc-CCCCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 202 VEWRIKEIESLLCT-GFAGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 202 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
|++.++++.+.+.. ......+|+|.|..|+||||+++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45566666666553 2345689999999999999999999886643
No 274
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.98 E-value=0.12 Score=57.46 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=28.4
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
..++|+++|.+|+||||++..++..++.+-..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999998776553334444
No 275
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.97 E-value=0.098 Score=53.77 Aligned_cols=36 Identities=28% Similarity=0.155 Sum_probs=26.1
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh-ccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~ 255 (963)
-.+++|.|+.|+|||||++.++.... ..-..++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 36899999999999999999885322 3334455553
No 276
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.94 E-value=0.016 Score=63.85 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=35.3
Q ss_pred cccchhhHHHHHHhHh-------------cCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 199 LVGVEWRIKEIESLLC-------------TGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 199 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
++|.+..++.+...+. ......+.+.++|++|+|||++|+.+++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 6888888888777662 111134568999999999999999999876
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.92 E-value=0.024 Score=56.87 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=28.4
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
++|.+.+........+|+|.|..|.|||||++.+...+.
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344343332234567999999999999999999988665
No 278
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.90 E-value=0.017 Score=62.97 Aligned_cols=109 Identities=16% Similarity=0.119 Sum_probs=64.7
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCc-eEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHcCCce
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEG-SYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWN-IESQLNRLARKKF 298 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~-~~~l~~~L~~k~~ 298 (963)
.+++|.|+.|.|||||.+.+...+...... ++.+.+..+...... . ....+......... .+.+...|...+=
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-~----~~v~q~~~~~~~~~~~~~La~aL~~~Pd 198 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-K----CLVNQREVHRDTLGFSEALRSALREDPD 198 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-S----SEEEEEEBTTTBSCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-c----cceeeeeeccccCCHHHHHHHHhhhCcC
Confidence 489999999999999999998866544333 333332111100000 0 00000000001112 2377888889999
Q ss_pred EEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchhh
Q 002125 299 LIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQVL 337 (963)
Q Consensus 299 LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~ 337 (963)
+|++|.+.+.+.++.+.... ..|..||+||-....+
T Consensus 199 villDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 199 IILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred EEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999999888776655442 2466788888876544
No 279
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.75 E-value=0.11 Score=55.92 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=25.5
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
....+++|+|+.|+||||+++.++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999998866544
No 280
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.69 E-value=0.076 Score=56.93 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=44.0
Q ss_pred cchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHh
Q 002125 201 GVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSK 276 (963)
Q Consensus 201 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 276 (963)
|...-...|..++ .+-..-.++.|.|.+|+||||||..++.....+-..++|+.. ......+...+.+.
T Consensus 50 ~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl------E~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 50 GVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL------EMGKKENIKRLIVT 118 (315)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES------SSCHHHHHHHHHHH
T ss_pred CccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC------CCCHHHHHHHHHHH
Confidence 3333344555555 333445689999999999999999998766544456677642 23445555555543
No 281
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.67 E-value=0.19 Score=56.63 Aligned_cols=69 Identities=16% Similarity=0.063 Sum_probs=43.7
Q ss_pred chhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEEEecchhhccCCHHHHHHHHHHhh
Q 002125 202 VEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLSKL 277 (963)
Q Consensus 202 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 277 (963)
...-...|..++ .+-..-.++.|.|.+|+||||+|..++..+... -..++|++. ......+...++...
T Consensus 183 i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl------E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 183 VRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL------EMPAAQLTLRMMCSE 252 (444)
T ss_dssp CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES------SSCHHHHHHHHHHHH
T ss_pred ccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC------CCCHHHHHHHHHHHH
Confidence 333344455555 343445689999999999999999999876543 335666642 234456666665443
No 282
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.65 E-value=0.14 Score=53.98 Aligned_cols=34 Identities=15% Similarity=0.057 Sum_probs=27.8
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhcc--CCceEEEE
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRH--FEGSYFAQ 255 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~ 255 (963)
++-|.|.+|+||||||.+++...... -..++|++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999998876654 34567775
No 283
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.64 E-value=0.013 Score=57.11 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=22.2
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.+|.|.|++|+||||+|+.+..++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999988753
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.57 E-value=0.039 Score=57.38 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=61.6
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEec--chhhccCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHcC
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNV--REAEETGGIKDLQKELLSKLLNDRNVWNI-ESQLNRLAR 295 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~~~~-~~l~~~L~~ 295 (963)
.-.+++|+|+.|.|||||++.+...+...+...+++... ....+.. .. +..+..-....... ..+...+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~--~~----~v~q~~~gl~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK--KS----IVNQREVGEDTKSFADALRAALRE 97 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS--SS----EEEEEEBTTTBSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCc--ce----eeeHHHhCCCHHHHHHHHHHHHhh
Confidence 346899999999999999999988665443444444321 0000000 00 00000000000122 356666666
Q ss_pred CceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCchh
Q 002125 296 KKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQV 336 (963)
Q Consensus 296 k~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v 336 (963)
++=+|++|...+.+....+.... ..|..|++||-+..+
T Consensus 98 ~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 98 DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred CCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 78899999998776655544332 246678888876543
No 285
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.54 E-value=0.15 Score=55.63 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=36.2
Q ss_pred hHHHHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 205 RIKEIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 205 ~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
-...|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|++
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3445555664 22233458889999999999999999887655545677876
No 286
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=94.48 E-value=0.11 Score=49.19 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=65.5
Q ss_pred ccccccCchHHHHHHHHhhCCCceEEeC-CCC----C----CccchHHHHHHhhhcceeeeeeccCccchhhhHHHHHHH
Q 002125 34 RGEDTRDNFTSHLYSALCHNNIETFIDN-DLK----R----GDEISQSLLDTIEASAISIIIFSERYASSGWCLDELSKI 104 (963)
Q Consensus 34 ~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~----~----g~~~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~~El~~~ 104 (963)
+.+| .....-|.+.-....+-.|.|. +.. - -+.|.+.|.+.|..|+.+|+++|++...|.|-..|+..+
T Consensus 27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 3455 3345666666666666567775 442 2 235788999999999999999999999999999999888
Q ss_pred HHhhhcCCcEEEeEeeecc-Ccccccccccch
Q 002125 105 LECKHDYGQIVIPVFCRVD-PSHVRRQTGTFG 135 (963)
Q Consensus 105 ~~~~~~~~~~v~pvf~~v~-p~~vr~~~~~~~ 135 (963)
+. +.+..|+-|.-+-+ .+.++...|+|.
T Consensus 105 i~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp TT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred HH---hcCCcEEEEECCccccchhhhccccch
Confidence 72 23445777764322 234444444443
No 287
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.46 E-value=0.04 Score=58.18 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=25.6
Q ss_pred CCCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 217 FAGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 217 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
.....+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 356789999999999999999999886653
No 288
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.40 E-value=0.089 Score=58.86 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=27.6
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
..++|+|+|.+|+||||+|..++..+..+-..+.++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 356899999999999999999988765443334444
No 289
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.35 E-value=0.14 Score=55.63 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=36.1
Q ss_pred HHHHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 206 IKEIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 206 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
...|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|++
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445555564 23234468999999999999999999887655545677776
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.27 E-value=0.022 Score=54.92 Aligned_cols=25 Identities=16% Similarity=0.128 Sum_probs=22.1
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.+|+|.|++|+||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988754
No 291
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.24 E-value=0.038 Score=59.40 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=32.9
Q ss_pred cchhhHHHHHHhHh--cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 201 GVEWRIKEIESLLC--TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 201 Gr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
+.+.-.+++.+.+. ...+....|.|+|++|+||||+++.++..+...|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 33444455544443 1234566789999999999999999998765444
No 292
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.09 E-value=0.026 Score=61.63 Aligned_cols=51 Identities=20% Similarity=0.104 Sum_probs=36.0
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+...+.++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 344567999988666554433221 122388999999999999999998654
No 293
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.09 E-value=0.069 Score=53.23 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+|.|.|++|+||+|.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999998764
No 294
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.08 E-value=0.13 Score=54.49 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.3
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
...+++|+|..|+||||+++.++..+... ...+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 35799999999999999999999876543 334444
No 295
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.06 E-value=0.083 Score=60.10 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=27.7
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
...++|+|+|.+|+||||++..++..+..+-..+..++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34679999999999999999999987765433344443
No 296
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.05 E-value=0.023 Score=55.63 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.9
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+.|.|.|++|+||||+|+.++.++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999998876
No 297
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.03 E-value=0.049 Score=62.11 Aligned_cols=44 Identities=23% Similarity=0.130 Sum_probs=37.1
Q ss_pred CCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
+.++|++..++.+...+..+ .-|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 46899999999888777644 367899999999999999998755
No 298
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.03 E-value=0.024 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.++|+|.|++|+||||+|+.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999876
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.96 E-value=0.049 Score=53.53 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=23.3
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
.+|.|.|++|+||||+|+.+..++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 300
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.93 E-value=0.055 Score=53.75 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.3
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
...+|+|.|+.|.||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998775
No 301
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.92 E-value=0.12 Score=55.04 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=27.7
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
...+++|+|.+|+||||+++.++..+... ...+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35699999999999999999999876544 3344443
No 302
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.83 E-value=0.13 Score=55.39 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=44.8
Q ss_pred ccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhh
Q 002125 200 VGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKL 277 (963)
Q Consensus 200 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 277 (963)
.|...-...|..++. +-..-.++.|.|.+|+||||+|..++..+..+-..+.|++ -.-....+...+++..
T Consensus 27 ~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSDL 97 (338)
T ss_dssp CSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHHh
Confidence 344444445555553 3334468999999999999999999987655444556654 2234455666655543
No 303
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.72 E-value=0.17 Score=54.90 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.4
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
...+++|+|..|+||||+++.++..+... ...+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 45799999999999999999999876543 334444
No 304
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.67 E-value=0.035 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.4
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 305
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.67 E-value=0.029 Score=54.18 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=18.6
Q ss_pred EEEEEEccCCCChhhHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAV 240 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v 240 (963)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 306
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.62 E-value=0.053 Score=55.78 Aligned_cols=27 Identities=19% Similarity=-0.037 Sum_probs=23.4
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.....|+|.|++|+||||+|+.+.+++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998764
No 307
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.57 E-value=0.25 Score=55.55 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=28.0
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
...+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 45799999999999999999998876543 3444443
No 308
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.56 E-value=0.062 Score=57.46 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=30.1
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
++.++|+|+|-|||||||.|..++.-+...-..+.-++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46799999999999999999999887766544555554
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.55 E-value=0.034 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
..++|+|.|+.|+||||+|+.++.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988754
No 310
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.52 E-value=0.067 Score=52.32 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=24.9
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
...+|+|.|++|+||||+|+.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999877543
No 311
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.52 E-value=0.048 Score=53.62 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+|.|.|++|+||||+|+.+..++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
No 312
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.51 E-value=0.15 Score=54.05 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=27.3
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhc-cCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISR-HFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~ 254 (963)
..++++|+|.+|+||||++..++..+.. .-..+.++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv 140 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFI 140 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3569999999999999999999987753 32234444
No 313
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.39 E-value=0.038 Score=59.74 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=23.9
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
+.++|+|.+|+|||||++.+.+.+....
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 5789999999999999999988765543
No 314
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.39 E-value=0.17 Score=56.86 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=36.5
Q ss_pred cchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 201 GVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 201 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
|...-...|..++. +-..-.++.|.|.+|+||||+|..++.....+-..++|++
T Consensus 179 gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 33333444555552 3344568999999999999999999987665534566654
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.30 E-value=0.022 Score=55.69 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=23.1
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
|.|+|.|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999887654444
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.27 E-value=0.07 Score=51.09 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=26.9
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhcc-CCceE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRH-FEGSY 252 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~ 252 (963)
..++++|.|..|+|||||+..+...+..+ +...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ 37 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 37 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeE
Confidence 35689999999999999999999887654 44333
No 317
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.27 E-value=0.27 Score=53.84 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=61.5
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceE-EEEecchhhccCCHHHHHHHHHHhh-hcCCCCCCHHHHHHHHcCC
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSY-FAQNVREAEETGGIKDLQKELLSKL-LNDRNVWNIESQLNRLARK 296 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-~~~~~~~~~~~~~~~~l~~~ll~~l-~~~~~~~~~~~l~~~L~~k 296 (963)
.-.+++|+|..|.||||+++.+...+.......+ ++.+..+....... . +..+. .+.....-...++..++..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~-~----~v~Q~~~g~~~~~~~~~l~~~L~~~ 209 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK-S----IVNQREVGEDTKSFADALRAALRED 209 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS-S----EEEEEEBTTTBSCSHHHHHHHTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc-e----EEEeeecCCCHHHHHHHHHHHhhhC
Confidence 3468999999999999999999886654433333 33321100000000 0 00000 0000111124677777778
Q ss_pred ceEEEEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCch
Q 002125 297 KFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQ 335 (963)
Q Consensus 297 ~~LlVLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~~ 335 (963)
+=+|++|.+.+.+.+....... ..|..|+.|+-...
T Consensus 210 pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 210 PDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp CSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred cCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 8899999998877665544432 34666777776543
No 318
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.22 E-value=0.031 Score=54.41 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.+.|.|.|++|+||||+|+.++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998765
No 319
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.14 E-value=0.05 Score=53.36 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=23.2
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
.+|+|.|++|+||||+|+.+..++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987754
No 320
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.10 E-value=0.035 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.5
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.+|+|.|+.|+||||+++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 321
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.07 E-value=0.06 Score=52.93 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=32.4
Q ss_pred chhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 202 VEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 202 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
...-+..+..++.. -+....+.|+|++|+|||++|.++++.+..
T Consensus 41 ~~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 41 FITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33446677777753 233346899999999999999999987643
No 322
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.06 E-value=0.046 Score=53.69 Aligned_cols=24 Identities=46% Similarity=0.452 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCChhhHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
-.+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999998764
No 323
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.01 E-value=0.045 Score=54.34 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=21.7
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.|+|.|+.|+||||+|+.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999988764
No 324
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.01 E-value=0.05 Score=56.33 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.7
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
++|+|.|++|+||||||+.++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998865
No 325
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.00 E-value=0.1 Score=58.29 Aligned_cols=30 Identities=27% Similarity=0.633 Sum_probs=24.5
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhccCCce
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRHFEGS 251 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 251 (963)
.++|+|.+|+||||||..+......++..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 588999999999999999998766555433
No 326
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.97 E-value=0.047 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988753
No 327
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.90 E-value=0.59 Score=48.97 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=25.7
Q ss_pred chHHHHHHhhhcceeeeeeccCccchhhhHHHHHHHH
Q 002125 69 ISQSLLDTIEASAISIIIFSERYASSGWCLDELSKIL 105 (963)
Q Consensus 69 ~~~~~~~~i~~s~~~v~v~s~~y~~s~~c~~El~~~~ 105 (963)
...++.+.++++++.|.|+.-.-..+..+ .++...+
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l 48 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL 48 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH
Confidence 45678889999999999998766555555 3444443
No 328
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.88 E-value=0.046 Score=54.36 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+|+|.|+.|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.86 E-value=0.061 Score=52.92 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998764
No 330
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.84 E-value=0.16 Score=55.54 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=30.4
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
+++.+.+........+|+|+|.+|+|||||+..+...+...
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34444443334567899999999999999999998876544
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.82 E-value=0.093 Score=52.38 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.4
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
.+|+|.|++|+||||+|+.+..++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999998775543
No 332
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.77 E-value=0.079 Score=59.09 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=35.9
Q ss_pred CCcccchhhHHHHHHhHhc------------CCCCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 197 KDLVGVEWRIKEIESLLCT------------GFAGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
..++|.++.++.+...+.. .....+-+.++|++|+|||++|+.++..+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4577877777777655521 0112456889999999999999999987644
No 333
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.75 E-value=0.05 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+|+|.|++|+||||+|+.++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 334
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.71 E-value=0.066 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+++|.|+.|+||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 335
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.71 E-value=0.086 Score=52.80 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=24.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
..+|+|.|+.|+||||+|+.+..++...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35899999999999999999998876543
No 336
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.67 E-value=0.06 Score=55.68 Aligned_cols=28 Identities=14% Similarity=0.422 Sum_probs=23.9
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
....+|+|.|+.|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999999988654
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.63 E-value=0.076 Score=52.75 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
....+|+|.|+.|+||||+|+.++.++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998763
No 338
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.61 E-value=0.046 Score=53.24 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=17.9
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.+|.|.|++|+||||+|+.+..++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987643
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.61 E-value=0.045 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.9
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
++|+|.|++|+||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988653
No 340
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.60 E-value=0.1 Score=55.10 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.2
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
....+|.|.|++|+||||+|+.+..+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998764
No 341
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.57 E-value=0.059 Score=52.51 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.2
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999987653
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.53 E-value=0.066 Score=51.29 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.4
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.|+|.|+.|+||||+|+.+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988653
No 343
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.51 E-value=0.067 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
...|+|.|++|+||||+|+.++.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998765
No 344
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.49 E-value=0.062 Score=52.44 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+|+|.|++|+||||+|+.+..++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988653
No 345
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.46 E-value=0.55 Score=48.61 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEEccCCCChhhHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
.+++|.|..|.|||||.+.++..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998754
No 346
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.43 E-value=0.072 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999876
No 347
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.39 E-value=0.07 Score=52.95 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
...+|+|.|+.|+||||+|+.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998766
No 348
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.39 E-value=0.074 Score=52.74 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=22.9
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999874
No 349
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.35 E-value=0.22 Score=45.35 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=25.2
Q ss_pred CCccEEEcCCCCCcccCcc-cCCCCCCCEEECcCCCCc
Q 002125 756 KALETLIIDGTAMREVPES-LGQLSSVKNLVLTNNNLK 792 (963)
Q Consensus 756 ~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~ 792 (963)
++|+.|+|++|+|+.+|.. |..+++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3567777777777777643 566777777777777654
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.35 E-value=0.077 Score=52.04 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+|+|.|++|+||||+|+.+..++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 351
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.31 E-value=0.068 Score=52.80 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.4
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.+|+|.|++|+||||+|+.+..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988753
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.23 E-value=0.08 Score=52.51 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
...|+|.|++|+||||+|+.+...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998865
No 353
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.21 E-value=0.66 Score=51.43 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=28.1
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
..++++|+|.+|+||||++..++..+...-..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467999999999999999999998776653333333
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.20 E-value=0.086 Score=54.81 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 355
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.15 E-value=0.12 Score=55.10 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHhHhcC--CCCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 199 LVGVEWRIKEIESLLCTG--FAGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 199 ~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
++|-...+..+...+... ...+.+|+|.|..|+||||+|+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555555554444322 34567999999999999999999877654
No 356
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.10 E-value=0.38 Score=54.36 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=33.2
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEEE
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQ 255 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 255 (963)
..|..++ .+-..-.++.|.|.+|+||||||..++..+... -..++|+.
T Consensus 191 ~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 191 TELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3444444 233344689999999999999999999876543 23566664
No 357
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.08 E-value=0.079 Score=53.65 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.6
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.+|+|+|+.|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 358
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.07 E-value=0.08 Score=51.90 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=24.1
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.+++|.|+.|+|||||++.++. .....+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~----~~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA----QLDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH----HSSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhc----ccCCeEEEc
Confidence 5789999999999999999975 233445553
No 359
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.04 E-value=0.061 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.++|+|.|++|+||||+++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988653
No 360
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.03 E-value=0.6 Score=61.33 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=35.4
Q ss_pred HHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 208 EIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 208 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
+|..+|. .+-...+.+.|+|++|+|||+||.+++.....+=..+.|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4555554 22234578999999999999999999987766655667775
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.98 E-value=0.069 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
...|+|.|++|+||||+|+.++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998865
No 362
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.98 E-value=0.087 Score=52.65 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=24.3
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
..+|+|.|+.|+||||+|+.+..++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.95 E-value=0.085 Score=51.81 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=22.3
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhc
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
+|+|.|+.|+||||+|+.+..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987743
No 364
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.95 E-value=0.1 Score=52.32 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
...++|.|.|++|+||||.|+.++.++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 567999999999999999999998764
No 365
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.90 E-value=0.058 Score=52.87 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=23.7
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998765444
No 366
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.86 E-value=0.078 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.++++|.|+.|+|||||++.+.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987653
No 367
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.85 E-value=0.12 Score=52.91 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=28.3
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
-.++.|.|.+|+||||||..++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 358999999999999999998876554445566664
No 368
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.84 E-value=0.23 Score=55.30 Aligned_cols=52 Identities=31% Similarity=0.431 Sum_probs=33.6
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEEEecchhhccCCHHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLS 275 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~ 275 (963)
+-++|.|.+|+|||+|+..+.+.+... -+.++|+ .+++- ...+.++.+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGER--~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGER--TREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESCC--HHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCCc--chHHHHHHHHhhh
Confidence 468999999999999999999876443 3445554 23221 1234455555554
No 369
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.83 E-value=0.08 Score=52.61 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEEEEccCCCChhhHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~ 242 (963)
+|+|.|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999886
No 370
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.81 E-value=0.1 Score=52.12 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
...+|+|.|..|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999988654
No 371
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.81 E-value=0.09 Score=52.41 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=22.2
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
....+|+|+|.+|+||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998753
No 372
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.80 E-value=0.72 Score=52.19 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=25.8
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhccCC-ceEEE
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRHFE-GSYFA 254 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~ 254 (963)
.+.|.|.+|+|||+++..+...+..... .+..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 8899999999999999999887655443 33333
No 373
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.76 E-value=0.2 Score=53.99 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=58.1
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHcCCceEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIESQLNRLARKKFLI 300 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~l~~~L~~k~~Ll 300 (963)
..++|+|..|.|||||++.+...+.. -...+.+.+..+..... ... ... +...........+...|..++=+|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~-~~~----~i~-~~~ggg~~~r~~la~aL~~~p~il 244 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH-HKN----YTQ-LFFGGNITSADCLKSCLRMRPDRI 244 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS-CSS----EEE-EECBTTBCHHHHHHHHTTSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc-chh----EEE-EEeCCChhHHHHHHHHhhhCCCEE
Confidence 47999999999999999998865432 24555665432211000 000 000 000011123346777788888899
Q ss_pred EEcCCCCHHHHHHHHHhccCCCCCceEEEEeCCc
Q 002125 301 VFDDVTHPRQIESLIRRLDRLASGSRVIITTRDK 334 (963)
Q Consensus 301 VLDdv~~~~~~~~l~~~l~~~~~gs~IivTTR~~ 334 (963)
++|.+...+.++.+. .+.. + +..+|+||...
T Consensus 245 ildE~~~~e~~~~l~-~~~~-g-~~tvi~t~H~~ 275 (330)
T 2pt7_A 245 ILGELRSSEAYDFYN-VLCS-G-HKGTLTTLHAG 275 (330)
T ss_dssp EECCCCSTHHHHHHH-HHHT-T-CCCEEEEEECS
T ss_pred EEcCCChHHHHHHHH-HHhc-C-CCEEEEEEccc
Confidence 999998766555443 3221 1 22356666544
No 374
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.70 E-value=0.18 Score=50.69 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=31.4
Q ss_pred hhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 203 EWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 203 ~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
++..+++...+.. ...++|+|+|.+|+|||||+..+.......+
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~ 58 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNEV 58 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccCC
Confidence 3344455544432 3568999999999999999999988765443
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.63 E-value=0.11 Score=50.34 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
..+|+|.|+.|+||||+++.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468899999999999999999887643
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.63 E-value=0.12 Score=50.91 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.9
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
...+|+|+|+.|+||||+|+.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998753
No 377
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.60 E-value=0.13 Score=52.15 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=27.0
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.+++|.|.+|+|||||++.++......-..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 58999999999999999999876544333455553
No 378
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.57 E-value=0.29 Score=49.31 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=28.8
Q ss_pred HHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 206 IKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 206 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
.+.+...+.. .....|+|+|.+|+|||||+..+.......
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444444432 346789999999999999999998765443
No 379
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.56 E-value=0.089 Score=52.24 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.5
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.+++|.|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998753
No 380
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.53 E-value=0.077 Score=52.25 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999987644
No 381
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.46 E-value=0.1 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.3
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhc
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987644
No 382
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.38 E-value=0.15 Score=52.63 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
...+|.|.|++|+||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999987653
No 383
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.37 E-value=0.27 Score=54.96 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=51.1
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhc-cCCceEEEEecchhhccCCHHHHHHHHHHhhhcC-------CCC-------CC
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQNVREAEETGGIKDLQKELLSKLLND-------RNV-------WN 285 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-------~~~-------~~ 285 (963)
+-++|.|.+|+|||+|+.++.+.+.. +-+.++|+ .+++- .....++.+++...-... ... ..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER--~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p 242 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGER--TREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 242 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCC--SHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSC
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccC--cHHHHHHHHhhhcccccccccccccceEEEEeCCCCC
Confidence 45899999999999999999987644 44555555 33221 123455555555431111 000 00
Q ss_pred -H---------HHHHHHHc---CCceEEEEcCCCCH
Q 002125 286 -I---------ESQLNRLA---RKKFLIVFDDVTHP 308 (963)
Q Consensus 286 -~---------~~l~~~L~---~k~~LlVLDdv~~~ 308 (963)
. -.+.++++ ++.+|+++||+-..
T Consensus 243 ~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 243 PGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp HHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 0 03445565 47999999998543
No 384
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.37 E-value=0.096 Score=52.07 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.6
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.+++|.|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998754
No 385
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.35 E-value=0.11 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 386
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.35 E-value=0.099 Score=52.05 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 387
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.33 E-value=0.26 Score=48.23 Aligned_cols=106 Identities=16% Similarity=0.104 Sum_probs=56.1
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC---CCHHHHHHHHcCC
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV---WNIESQLNRLARK 296 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~l~~~L~~k 296 (963)
-++..++|..|.||||.+...+++...+-..+..+.-... ...+. ..+.+.++..... ...+.+.+.+.++
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d--~r~~~----~~i~s~~g~~~~a~~~~~~~~i~~~~~~~ 81 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID--NRYSK----EDVVSHMGEKEQAVAIKNSREILKYFEED 81 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------------CEEECTTSCEEECEEESSSTHHHHHCCTT
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--ccchH----HHHHhhcCCceeeEeeCCHHHHHHHHhcc
Confidence 4689999999999999999988876544333333321100 00000 0111111100000 1122444444443
Q ss_pred ceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEEEeCCc
Q 002125 297 KFLIVFDDVTH--PRQIESLIRRLDRLASGSRVIITTRDK 334 (963)
Q Consensus 297 ~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~ 334 (963)
-=+|++|.+.. .++++.+....+ .|..||+|.++.
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 34899998733 345555443222 377899999865
No 388
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.25 E-value=0.11 Score=61.32 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=41.1
Q ss_pred cccCCCcccchhhHHHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 193 QSYNKDLVGVEWRIKEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 193 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
|.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+...
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 334467899999998888888654 478999999999999999999865433
No 389
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.22 E-value=0.2 Score=50.66 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=31.2
Q ss_pred HHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc------cCCceEEEE
Q 002125 209 IESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR------HFEGSYFAQ 255 (963)
Q Consensus 209 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 255 (963)
+...+..+-..-.+++|.|..|+|||||++.++..... .-...+|+.
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 33344322234479999999999999999999874432 123466665
No 390
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.20 E-value=0.081 Score=53.46 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
...|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999988754
No 391
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.20 E-value=0.11 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+|+|.|+.|+|||||++.++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 392
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.02 E-value=0.15 Score=51.07 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.7
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
...+|+|.|+.|+||||+|+.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 347899999999999999999988765
No 393
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.01 E-value=0.39 Score=47.59 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=55.7
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEEecchhhccCCHHHHHHHHHHhhhcCCCC---CCHHHHHHHHcC
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNV---WNIESQLNRLAR 295 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~l~~~L~~ 295 (963)
.-.+..++|.-|.||||.|...+.+...+-..++.+.-.. ....+... +.+.++..... ...+.+.+...+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~--d~R~ge~~----i~s~~g~~~~a~~~~~~~~~~~~~~~ 100 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI--DNRYSEED----VVSHNGLKVKAVPVSASKDIFKHITE 100 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSGGGGGGGCCS
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc--CCcchHHH----HHhhcCCeeEEeecCCHHHHHHHHhc
Confidence 3478889999999999999998887765544444443111 11122222 22222211111 122223333333
Q ss_pred CceEEEEcCCCC--HHHHHHHHHhccCCCCCceEEEEeCCch
Q 002125 296 KKFLIVFDDVTH--PRQIESLIRRLDRLASGSRVIITTRDKQ 335 (963)
Q Consensus 296 k~~LlVLDdv~~--~~~~~~l~~~l~~~~~gs~IivTTR~~~ 335 (963)
+--+|++|.+.- .++++.+....+ .|-.||+|.++..
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 334999999843 345544433222 3779999999653
No 394
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.98 E-value=0.1 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
...|+|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998764
No 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.91 E-value=0.088 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
..|+|.|+.|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998764
No 396
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.89 E-value=0.1 Score=55.09 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=20.5
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
...+|+|.|..|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988654
No 397
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.87 E-value=0.16 Score=51.78 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=32.1
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc------cCCceEEEE
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR------HFEGSYFAQ 255 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 255 (963)
.|..+|..+-..-.+++|.|.+|+||||||..++..... .-..++|+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 444445322223458999999999999999999875322 134567775
No 398
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.83 E-value=0.11 Score=53.76 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+|+|.|+.|+||||+++.++.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998765
No 399
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.83 E-value=0.21 Score=53.26 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=29.4
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
...++|+|+|-||+||||+|..++..+...-..++.++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35688999999999999999999987776544455553
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.81 E-value=0.069 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.5
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhc
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
+|+|.|..|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 401
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.81 E-value=0.17 Score=54.86 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 206 IKEIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 206 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
...|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 345555554 23234468999999999999999999876655545667775
No 402
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.76 E-value=0.11 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999987653
No 403
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.73 E-value=0.11 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.6
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998876
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.70 E-value=0.13 Score=53.99 Aligned_cols=25 Identities=44% Similarity=0.893 Sum_probs=22.0
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999983
No 405
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.65 E-value=0.11 Score=50.03 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.8
Q ss_pred eEEEEEEccCCCChhhHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAV 240 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v 240 (963)
-.+++|+|..|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999963
No 406
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.65 E-value=0.13 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.8
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988653
No 407
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.49 E-value=0.44 Score=53.11 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999987643
No 408
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.48 E-value=0.22 Score=49.80 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=22.6
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347789999999999999999876554
No 409
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.48 E-value=0.1 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.0
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
++++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987653
No 410
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.48 E-value=0.14 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
++|+|.|+.|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999987653
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.44 E-value=0.14 Score=51.92 Aligned_cols=25 Identities=16% Similarity=0.431 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..+|+|.|++|+||||+|+.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998775
No 412
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.44 E-value=0.25 Score=51.45 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=27.7
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
++|+|.|-||+||||+|..++..+..+-..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999988776544455553
No 413
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.42 E-value=0.17 Score=52.03 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
...+|+|.|..|.|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44789999999999999999998765
No 414
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.29 E-value=0.18 Score=53.85 Aligned_cols=29 Identities=28% Similarity=0.451 Sum_probs=24.8
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
....+|+|.|..|+|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45679999999999999999999886543
No 415
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.22 E-value=0.33 Score=52.59 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=25.8
Q ss_pred CCCeEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 217 FAGVYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 217 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
..+..+|+|.|.+|+|||||+..+...+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3567899999999999999999998765543
No 416
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.17 E-value=0.29 Score=50.58 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999998766
No 417
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.16 E-value=0.17 Score=50.88 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 418
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.12 E-value=0.25 Score=47.63 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.8
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
.++++|.|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987654
No 419
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.05 E-value=0.15 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.7
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..|+|.|+.|+||||+|+.+..++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998765
No 420
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.04 E-value=0.16 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.|+|.|++|+||||+|+.+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
No 421
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.04 E-value=0.16 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 422
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.00 E-value=1 Score=52.35 Aligned_cols=34 Identities=21% Similarity=0.092 Sum_probs=26.1
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
+++.|.|.+|.||||++..+...+...-..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 5888999999999999999988665543334333
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.96 E-value=0.16 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.2
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
..|.|.|+.|+||||+|+.++.++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999988753
No 424
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.86 E-value=0.64 Score=50.28 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=33.9
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhc------cCCceEEEE
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISR------HFEGSYFAQ 255 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 255 (963)
.|..+|..+-..-.++.|+|.+|+||||||..++..... .-..++|++
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 444555433345679999999999999999999876432 224567775
No 425
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.86 E-value=0.16 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.8
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
++|.|.|+.|+||||||+.++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998764
No 426
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.85 E-value=0.29 Score=46.35 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..-.+++|.|..|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344689999999999999999998865
No 427
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.83 E-value=0.29 Score=51.63 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=27.6
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.++|+|.|-||+||||+|..++..+...-..+..++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999999987765533444443
No 428
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.58 E-value=0.16 Score=50.54 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.7
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.+++|.|+.|+|||||++.+...+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 429
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.56 E-value=0.83 Score=44.95 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=27.4
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.|+|-|.-|+||||.++.+++.+..+...+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4788999999999999999998877655555443
No 430
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.50 E-value=0.11 Score=55.39 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.++|+|.|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998654
No 431
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.50 E-value=1.4 Score=50.46 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=38.8
Q ss_pred CCCCeEEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEEEecchhhccCCHHHHHHHHHHhhh
Q 002125 216 GFAGVYILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLSKLL 278 (963)
Q Consensus 216 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 278 (963)
+-..-.++.|.|.+|+||||||.+++.....+ -..++|++. .....++...++....
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~------E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML------EESVEETAEDLIGLHN 295 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES------SSCHHHHHHHHHHHHT
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec------cCCHHHHHHHHHHHHc
Confidence 33444688999999999999999999877655 345666642 2334566666554443
No 432
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.43 E-value=0.27 Score=53.80 Aligned_cols=33 Identities=21% Similarity=0.099 Sum_probs=25.7
Q ss_pred hHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 212 LLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 212 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
-+..+-...++++|+|++|.|||||++.++...
T Consensus 161 ~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 161 CMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 333344455799999999999999999998754
No 433
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.43 E-value=0.33 Score=51.34 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=27.7
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEE
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFA 254 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 254 (963)
..++++|+|.+|+||||++..++..+...-..+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 457999999999999999999998776543333333
No 434
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.37 E-value=0.29 Score=51.75 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=27.8
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCC-ceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFE-GSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~ 255 (963)
-.+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358999999999999999999987654433 455554
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.34 E-value=0.17 Score=53.41 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.++|+|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 436
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.29 E-value=0.42 Score=51.34 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=32.7
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHHhcc------CCceEEEE
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKISRH------FEGSYFAQ 255 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 255 (963)
.|..+|..+-..-.++.|+|.+|+||||||..++...... -..++|++
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4444553222334589999999999999999998765332 24567775
No 437
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.28 E-value=0.22 Score=52.46 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..++|+|.|+.|+||||||..++.++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 438
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.12 E-value=0.63 Score=60.28 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=38.4
Q ss_pred cchhhHHHHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 201 GVEWRIKEIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 201 Gr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
+...-..+|..+|. .+-..-.++.|.|.+|+||||||.+++......-..+.|++
T Consensus 712 ~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 712 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 33444456666664 23334468999999999999999999987765544566764
No 439
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.09 E-value=0.16 Score=51.04 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.6
Q ss_pred EEEEEEccCCCChhhHHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998754
No 440
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.95 E-value=0.2 Score=49.11 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.3
Q ss_pred EEEEEccCCCChhhHHHHHHHHHh
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
+++|+|..|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999987654
No 441
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.86 E-value=0.37 Score=49.31 Aligned_cols=36 Identities=28% Similarity=0.181 Sum_probs=26.8
Q ss_pred eEEEEEEccCCCChhhHHHHHHHH-HhccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNK-ISRHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~-~~~~f~~~~~~~ 255 (963)
-.++.|.|.+|+|||++|.+++.. ....-..++|+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 458899999999999999998764 333344555654
No 442
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.84 E-value=0.18 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEEEEEccCCCChhhHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
+.|.|.|.+|+||||||.+++.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999865
No 443
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=88.66 E-value=0.57 Score=48.47 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=22.5
Q ss_pred chHHHHHHhhhcceeeeeeccCccchhhh
Q 002125 69 ISQSLLDTIEASAISIIIFSERYASSGWC 97 (963)
Q Consensus 69 ~~~~~~~~i~~s~~~v~v~s~~y~~s~~c 97 (963)
...++.+.++.+++.|.|++.+-..+..+
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 44688999999999999998765555544
No 444
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.62 E-value=0.37 Score=47.87 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=25.8
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhccCCc
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRHFEG 250 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 250 (963)
+.|+|-|.-|+||||+++.+++.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 578999999999999999999988765543
No 445
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.56 E-value=0.17 Score=51.33 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=15.9
Q ss_pred EEEEEEccCCCChhhHHHHHH-HHH
Q 002125 221 YILGIWGIGGIGKTTIADAVF-NKI 244 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~-~~~ 244 (963)
.+++|.|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 653
No 446
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.55 E-value=0.23 Score=52.73 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.9
Q ss_pred EEEEEEccCCCChhhHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 447
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.50 E-value=0.21 Score=50.16 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
-.+++|.|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999987654
No 448
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.47 E-value=0.25 Score=52.64 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=24.3
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
....+|+|.|..|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987664
No 449
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.42 E-value=0.34 Score=55.10 Aligned_cols=28 Identities=4% Similarity=0.052 Sum_probs=24.8
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
...+|.+.|+.|+||||+|++++.++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999998864
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.39 E-value=0.41 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.7
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
.+++|.|.+|+||||||..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999876543
No 451
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.37 E-value=0.72 Score=46.00 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.7
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
...|+|.|+.|+||||+++.+...+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999987654
No 452
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.28 E-value=0.14 Score=49.33 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.8
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
++++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999886654
No 453
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.22 E-value=0.26 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.9
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
...+|+|.|+.|+||||+++.+..++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 454
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.18 E-value=0.41 Score=47.26 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=27.0
Q ss_pred EEEEEE-ccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 221 YILGIW-GIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 221 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
++|+|+ +-||+||||+|..++..+..+-..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 578887 68999999999999987776544455554
No 455
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.97 E-value=0.3 Score=49.51 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=24.7
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
...+|+|.|+.|+||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4478999999999999999999988765
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.92 E-value=0.27 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHh
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
...|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999988753
No 457
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.92 E-value=0.25 Score=49.16 Aligned_cols=23 Identities=35% Similarity=0.192 Sum_probs=20.5
Q ss_pred EEEEEEccCCCChhhHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
.+++|.|..|.|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998764
No 458
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.79 E-value=0.3 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.4
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6899999999999999999988653
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.63 E-value=0.48 Score=54.42 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=26.0
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhccCC
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISRHFE 249 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 249 (963)
...+|.++|++|.||||+|+.++..+...|-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~ 64 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGV 64 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 4578999999999999999999987755443
No 460
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.35 E-value=0.43 Score=46.47 Aligned_cols=24 Identities=21% Similarity=0.061 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCChhhHHHHHHH
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
....|+|+|.+|+|||||...+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999876
No 461
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.32 E-value=0.53 Score=51.62 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=29.8
Q ss_pred CCeEEEEEEc-cCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 218 AGVYILGIWG-IGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 218 ~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
...++|+|+| -||+||||+|..++..++.+-..+..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4678899885 9999999999999987766644555554
No 462
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.18 E-value=0.25 Score=60.18 Aligned_cols=53 Identities=26% Similarity=0.319 Sum_probs=40.3
Q ss_pred CCCcccchhhHHHHHHhHhcC-----------CCCeEEEEEEccCCCChhhHHHHHHHHHhccC
Q 002125 196 NKDLVGVEWRIKEIESLLCTG-----------FAGVYILGIWGIGGIGKTTIADAVFNKISRHF 248 (963)
Q Consensus 196 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 248 (963)
...++|.++..+++.+.+... -...+.+.++|++|+|||+||+.++......|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356789998888888776521 12345688999999999999999999775443
No 463
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.17 E-value=0.3 Score=48.33 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.9
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHh
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKIS 245 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~ 245 (963)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 464
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.16 E-value=0.81 Score=49.28 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=24.6
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
....+++|.|.+|+|||||.+.+...+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45679999999999999999999875543
No 465
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=87.11 E-value=1.2 Score=49.05 Aligned_cols=46 Identities=24% Similarity=0.235 Sum_probs=34.4
Q ss_pred CCcccchhhHHHHHHhHhc-CCCCeEEEEEEccCCCChhhHHHHHHHH
Q 002125 197 KDLVGVEWRIKEIESLLCT-GFAGVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 197 ~~~vGr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
..++|....++++.+.+.. ...+.. |.|.|.+|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 4678888888887776653 222333 489999999999999988764
No 466
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.05 E-value=0.35 Score=45.31 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.7
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
+-|+|.|.+|+|||||+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999876
No 467
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.05 E-value=0.45 Score=52.68 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=46.2
Q ss_pred EEEEEccCCCChhhHHHHHHHHHhccCC----ceEEEEecchhhccCCHHHHHHHHHHhhhc--------CCCCCCHH--
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKISRHFE----GSYFAQNVREAEETGGIKDLQKELLSKLLN--------DRNVWNIE-- 287 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~--------~~~~~~~~-- 287 (963)
-++|.|.+|+|||+|+.++++....+.+ .++++ .+++- ...+.++.+++...=.. ..+.....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~-~iGeR--~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFA-AIGIT--FEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEE-EEEEC--HHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEE-EecCC--cHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 4689999999999999998876543223 33343 23221 12334455544332100 01111111
Q ss_pred -------HHHHHHc---CCceEEEEcCCCC
Q 002125 288 -------SQLNRLA---RKKFLIVFDDVTH 307 (963)
Q Consensus 288 -------~l~~~L~---~k~~LlVLDdv~~ 307 (963)
.+.++++ ++.+|+++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 3445554 6899999999853
No 468
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.03 E-value=0.37 Score=52.29 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=28.0
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.+..+|..+-..-.++.|+|.+|+|||||+..++..+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444554333445799999999999999999998765
No 469
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.97 E-value=0.39 Score=46.96 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHH
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
..-.|+|.|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467899999999999999998863
No 470
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.96 E-value=1.1 Score=58.74 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=41.3
Q ss_pred cccchhhHHHHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 199 LVGVEWRIKEIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 199 ~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
..+...-...|..+|. .+-..-+++.|+|.+|+||||||.+++......-..++|++
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4445555566777774 23334568999999999999999999987766545677775
No 471
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=86.78 E-value=0.77 Score=49.76 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=29.1
Q ss_pred CCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 217 FAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 217 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
....+++.+.|-||+||||+|..++..+...-..+..++
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345567777899999999999999987776644444443
No 472
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.74 E-value=0.78 Score=49.10 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=27.9
Q ss_pred HHHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHHHH
Q 002125 207 KEIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 207 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
..|..+|..+-..-.++.|+|.+|+|||+||..++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34445554332345799999999999999999998753
No 473
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.72 E-value=0.32 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.5
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
.+++|.|+.|.|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999875
No 474
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.53 E-value=0.4 Score=45.47 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 475
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=86.52 E-value=0.68 Score=49.64 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=28.1
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.+++...|-||+||||+|..++..+...-..+..++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 467777899999999999999988776644455554
No 476
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.50 E-value=0.28 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
.+++|.|+.|.|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999874
No 477
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.45 E-value=0.79 Score=46.17 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhcc
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRH 247 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 247 (963)
-..|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3579999999999999999999987654
No 478
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.42 E-value=0.29 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
.+++|.|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999998864
No 479
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=86.22 E-value=1 Score=46.77 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=29.7
Q ss_pred CCeEEEEEEc-cCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 218 AGVYILGIWG-IGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 218 ~~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
...++|+|+| .||+||||+|..++..+...-..+..++
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4568899987 5899999999999988776555556554
No 480
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.21 E-value=0.61 Score=50.39 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=29.5
Q ss_pred CCeEEEEEEccCCCChhhHHHHHHHHHh--ccCCceEEEE
Q 002125 218 AGVYILGIWGIGGIGKTTIADAVFNKIS--RHFEGSYFAQ 255 (963)
Q Consensus 218 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~ 255 (963)
...+++.+.|-||+||||+|..++..+. ..-..+..++
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4467889999999999999999998877 5444444443
No 481
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=86.19 E-value=0.7 Score=47.05 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=28.0
Q ss_pred CeEEEEEEc-cCCCChhhHHHHHHHHHhcc-CCceEEEE
Q 002125 219 GVYILGIWG-IGGIGKTTIADAVFNKISRH-FEGSYFAQ 255 (963)
Q Consensus 219 ~~~vv~I~G-~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 255 (963)
..++|+|+| -||+||||+|..++..+... -..+..++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 357888875 79999999999999988776 34444443
No 482
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.16 E-value=0.35 Score=47.60 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChhhHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
.-.|+|.|..|+|||||.+.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 35689999999999999999886
No 483
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.97 E-value=0.33 Score=47.09 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEEEccCCCChhhHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~ 242 (963)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998875
No 484
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.93 E-value=0.31 Score=49.64 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=35.3
Q ss_pred HHHHHHcCCceEEEEcCCC---CHHHHHHHHHhcc---CCCCCceEEEEeCCchhhhcCCcceEEEe
Q 002125 288 SQLNRLARKKFLIVFDDVT---HPRQIESLIRRLD---RLASGSRVIITTRDKQVLKNCRARQIFRM 348 (963)
Q Consensus 288 ~l~~~L~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~~gs~IivTTR~~~v~~~~~~~~~~~l 348 (963)
.+.+.+..++-+++||..- |...-+.+...+. ....|..||++|.+...+.. .++++.+
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~--~d~v~~l 201 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ--VDVIIVM 201 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGG--SSEEEEE
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHh--CCEEEEE
Confidence 4555666778899999873 3333444444442 22347778888887766543 3445444
No 485
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=85.79 E-value=0.42 Score=48.91 Aligned_cols=33 Identities=30% Similarity=0.627 Sum_probs=25.8
Q ss_pred EEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 223 LGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 223 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
|+|.|-||+||||+|..++..+...-..+..++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999998876544444443
No 486
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.75 E-value=1 Score=45.71 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=27.3
Q ss_pred eEEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEE
Q 002125 220 VYILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFA 254 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 254 (963)
..+|+|.|+.|+||||+++.+...+... ++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 3589999999999999999999987554 4434444
No 487
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.71 E-value=0.39 Score=45.10 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhhHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~ 242 (963)
-|++.|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999876
No 488
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.69 E-value=0.5 Score=44.60 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCChhhHHHHHHH
Q 002125 220 VYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 220 ~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
.--|+|.|.+|+|||||+..+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34578999999999999999886
No 489
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=85.65 E-value=0.38 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
.+++|.|..|.|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999876
No 490
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=85.61 E-value=1.1 Score=47.34 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=29.5
Q ss_pred CCeEEEEEEcc-CCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 218 AGVYILGIWGI-GGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 218 ~~~~vv~I~G~-gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
...++|+|+|. ||+||||+|..++..+...-..+..++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 45688999885 899999999999988776544555554
No 491
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.48 E-value=1.1 Score=44.54 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.5
Q ss_pred EEEEEEccCCCChhhHHHHHHHHHhcc-CCceEEE
Q 002125 221 YILGIWGIGGIGKTTIADAVFNKISRH-FEGSYFA 254 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~ 254 (963)
..|+|.|..|+||||+++.+...+... +..+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 478999999999999999999987554 3244443
No 492
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=85.46 E-value=0.34 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
.+++|.|+.|.|||||++.++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999864
No 493
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.43 E-value=1.3 Score=57.53 Aligned_cols=52 Identities=23% Similarity=0.210 Sum_probs=37.5
Q ss_pred hhHHHHHHhHh-cCCCCeEEEEEEccCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 204 WRIKEIESLLC-TGFAGVYILGIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 204 ~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
.-...|..+|. .+-..-+++.|+|.+|+||||||.+++......-..++|++
T Consensus 366 TGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 366 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 33455555564 22234568999999999999999999887665556677775
No 494
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.41 E-value=0.4 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEEccCCCChhhHHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFNK 243 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~~ 243 (963)
.+++|.|..|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998763
No 495
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.40 E-value=0.34 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEEEccCCCChhhHHHHHHH
Q 002125 221 YILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 221 ~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
.+++|.|+.|.|||||.+.++.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 496
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.33 E-value=0.38 Score=53.18 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=25.6
Q ss_pred HHHHhHhcCCCCeEEEEEEccCCCChhhHHHHHHH
Q 002125 208 EIESLLCTGFAGVYILGIWGIGGIGKTTIADAVFN 242 (963)
Q Consensus 208 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 242 (963)
++.+.|........+++|.|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 33334432223456999999999999999999886
No 497
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=85.31 E-value=1.2 Score=49.22 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCCeEEEEEE-ccCCCChhhHHHHHHHHHhc
Q 002125 217 FAGVYILGIW-GIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 217 ~~~~~vv~I~-G~gGiGKTtLA~~v~~~~~~ 246 (963)
....++|+|+ |-||+||||+|..++..+..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 3456888886 79999999999999987763
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=85.31 E-value=0.45 Score=47.86 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEEEccCCCChhhHHHHHHHHH
Q 002125 222 ILGIWGIGGIGKTTIADAVFNKI 244 (963)
Q Consensus 222 vv~I~G~gGiGKTtLA~~v~~~~ 244 (963)
.++|.|++|+||||+|+.++.++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998765
No 499
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=85.28 E-value=0.57 Score=47.01 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=24.9
Q ss_pred CeEEEEEEccCCCChhhHHHHHHHHHhc
Q 002125 219 GVYILGIWGIGGIGKTTIADAVFNKISR 246 (963)
Q Consensus 219 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 246 (963)
....|+|.|..|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999998765
No 500
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=85.17 E-value=0.58 Score=49.43 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=25.4
Q ss_pred EEEEEEc---cCCCChhhHHHHHHHHHhccCCceEEEE
Q 002125 221 YILGIWG---IGGIGKTTIADAVFNKISRHFEGSYFAQ 255 (963)
Q Consensus 221 ~vv~I~G---~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 255 (963)
++|+|++ -||+||||+|..++..+..+-..+..++
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4566665 9999999999999987765433444443
Done!