Query 002126
Match_columns 962
No_of_seqs 199 out of 1080
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 17:05:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 4.3E-97 9E-102 818.8 79.0 881 1-951 1-940 (982)
2 KOG2081 Nuclear transport regu 100.0 1.7E-71 3.8E-76 594.8 51.0 549 26-622 2-557 (559)
3 KOG2021 Nuclear mRNA export fa 100.0 6.5E-55 1.4E-59 473.8 58.3 762 7-816 3-829 (980)
4 COG5101 CRM1 Importin beta-rel 100.0 5.6E-51 1.2E-55 434.1 63.8 853 6-914 13-958 (1053)
5 KOG2023 Nuclear transport rece 100.0 9.9E-34 2.2E-38 305.4 42.1 711 7-913 13-774 (885)
6 KOG2171 Karyopherin (importin) 100.0 9.3E-30 2E-34 294.4 63.3 602 6-736 3-615 (1075)
7 KOG2020 Nuclear transport rece 100.0 1E-28 2.2E-33 292.3 61.6 854 4-913 7-936 (1041)
8 KOG1241 Karyopherin (importin) 99.9 2.5E-19 5.4E-24 198.3 62.1 596 19-736 12-647 (859)
9 KOG1991 Nuclear transport rece 99.8 3.6E-14 7.7E-19 162.7 64.4 710 7-834 4-780 (1010)
10 COG5215 KAP95 Karyopherin (imp 99.8 2.8E-14 6.1E-19 153.1 59.1 600 19-737 16-649 (858)
11 KOG1992 Nuclear export recepto 99.6 5.1E-10 1.1E-14 126.3 57.7 718 5-851 3-792 (960)
12 PF08389 Xpo1: Exportin 1-like 99.6 2.1E-15 4.6E-20 146.3 13.2 146 104-263 1-148 (148)
13 KOG1410 Nuclear transport rece 99.5 2.5E-07 5.4E-12 102.3 67.3 804 3-854 1-939 (1082)
14 KOG2274 Predicted importin 9 [ 99.5 3.2E-08 7E-13 113.3 54.7 511 8-603 5-562 (1005)
15 COG5656 SXM1 Importin, protein 99.3 7.9E-06 1.7E-10 92.1 61.0 634 19-736 14-690 (970)
16 PF08767 CRM1_C: CRM1 C termin 99.3 1.6E-09 3.5E-14 117.4 25.8 203 723-943 67-276 (319)
17 KOG1993 Nuclear transport rece 98.7 0.0015 3.3E-08 74.9 57.9 114 19-139 11-131 (978)
18 PF03810 IBN_N: Importin-beta 98.7 6E-08 1.3E-12 81.9 7.2 67 28-98 1-76 (77)
19 KOG2171 Karyopherin (importin) 98.6 0.00034 7.3E-09 83.9 37.5 372 415-833 95-484 (1075)
20 KOG2023 Nuclear transport rece 97.8 0.13 2.7E-06 58.7 38.5 342 461-853 455-818 (885)
21 KOG0915 Uncharacterized conser 97.0 1.3 2.7E-05 55.8 32.5 175 374-572 987-1174(1702)
22 PF08506 Cse1: Cse1; InterPro 96.5 0.29 6.3E-06 54.4 20.8 200 328-551 141-370 (370)
23 COG5657 CSE1 CAS/CSE protein i 96.4 0.041 8.9E-07 64.9 13.6 125 5-138 3-134 (947)
24 COG5215 KAP95 Karyopherin (imp 96.3 2.6 5.7E-05 47.6 31.9 87 480-573 323-415 (858)
25 KOG0212 Uncharacterized conser 96.2 2.4 5.1E-05 48.0 25.0 277 525-851 80-405 (675)
26 PF03378 CAS_CSE1: CAS/CSE pro 94.8 5.4 0.00012 45.6 22.5 181 677-895 65-253 (435)
27 KOG1824 TATA-binding protein-i 94.5 15 0.00033 44.4 54.2 682 57-853 16-766 (1233)
28 PF03378 CAS_CSE1: CAS/CSE pro 94.1 7.4 0.00016 44.4 21.6 243 565-852 22-272 (435)
29 KOG1824 TATA-binding protein-i 93.5 23 0.0005 43.0 56.5 137 451-601 490-639 (1233)
30 PF02985 HEAT: HEAT repeat; I 90.4 0.37 8.1E-06 32.1 3.3 29 530-558 1-31 (31)
31 KOG1241 Karyopherin (importin) 90.2 47 0.001 39.5 53.4 342 523-944 358-728 (859)
32 PF08767 CRM1_C: CRM1 C termin 89.2 18 0.0004 39.5 17.1 170 211-395 42-224 (319)
33 PRK09687 putative lyase; Provi 88.4 39 0.00084 36.2 19.2 208 9-268 25-250 (280)
34 KOG1242 Protein containing ada 87.3 65 0.0014 37.5 28.9 216 377-630 208-427 (569)
35 PF12348 CLASP_N: CLASP N term 86.0 14 0.00031 38.1 13.5 139 450-603 17-163 (228)
36 PF12755 Vac14_Fab1_bd: Vacuol 85.4 2.6 5.7E-05 36.8 6.3 40 524-563 22-63 (97)
37 COG5101 CRM1 Importin beta-rel 84.0 60 0.0013 37.7 17.3 227 680-913 189-451 (1053)
38 PF01602 Adaptin_N: Adaptin N 83.5 1E+02 0.0022 36.4 36.3 426 18-559 52-486 (526)
39 PTZ00429 beta-adaptin; Provisi 83.4 1.2E+02 0.0027 37.3 24.8 296 436-799 216-538 (746)
40 PF12460 MMS19_C: RNAPII trans 83.3 91 0.002 35.6 32.2 58 792-852 337-394 (415)
41 KOG0213 Splicing factor 3b, su 83.1 35 0.00075 40.4 15.3 164 415-604 940-1111(1172)
42 KOG0166 Karyopherin (importin) 83.0 78 0.0017 36.5 18.1 259 541-851 124-392 (514)
43 KOG1991 Nuclear transport rece 83.0 1.3E+02 0.0028 37.2 57.8 119 212-341 105-239 (1010)
44 PF12755 Vac14_Fab1_bd: Vacuol 81.4 7.4 0.00016 34.1 7.5 87 458-553 4-93 (97)
45 PF08167 RIX1: rRNA processing 80.5 45 0.00098 32.5 13.5 104 790-913 37-142 (165)
46 PF12348 CLASP_N: CLASP N term 80.3 59 0.0013 33.4 15.4 141 698-854 65-208 (228)
47 PF01602 Adaptin_N: Adaptin N 79.7 1.4E+02 0.0029 35.3 29.0 360 481-947 113-484 (526)
48 PF05918 API5: Apoptosis inhib 79.3 91 0.002 36.6 17.3 46 511-559 44-91 (556)
49 COG5181 HSH155 U2 snRNP splice 77.3 76 0.0016 36.9 15.2 164 415-604 745-916 (975)
50 PF13513 HEAT_EZ: HEAT-like re 76.2 4.4 9.6E-05 31.0 4.1 50 504-554 3-55 (55)
51 KOG0168 Putative ubiquitin fus 75.9 1.4E+02 0.0031 36.2 17.5 151 529-718 214-367 (1051)
52 KOG2753 Uncharacterized conser 75.8 79 0.0017 33.9 14.0 75 526-603 104-179 (378)
53 KOG2274 Predicted importin 9 [ 75.4 2.1E+02 0.0045 35.2 24.1 169 674-856 521-693 (1005)
54 PF08167 RIX1: rRNA processing 72.8 16 0.00035 35.6 8.0 80 45-133 30-110 (165)
55 cd00020 ARM Armadillo/beta-cat 72.8 4.7 0.0001 36.4 4.1 94 452-556 19-120 (120)
56 PF10508 Proteasom_PSMB: Prote 72.2 2.1E+02 0.0045 33.7 28.3 130 453-602 51-191 (503)
57 PF13513 HEAT_EZ: HEAT-like re 67.8 5.8 0.00013 30.3 3.0 54 454-515 1-54 (55)
58 KOG2021 Nuclear mRNA export fa 66.4 3E+02 0.0064 33.3 30.2 50 508-557 212-261 (980)
59 PF14500 MMS19_N: Dos2-interac 64.8 1.3E+02 0.0028 31.9 13.3 200 524-758 37-241 (262)
60 PF13646 HEAT_2: HEAT repeats; 64.3 44 0.00096 28.1 8.3 55 10-71 2-56 (88)
61 PF14911 MMS22L_C: S-phase gen 60.0 2.8E+02 0.0062 30.9 21.2 124 792-926 225-356 (373)
62 KOG0213 Splicing factor 3b, su 59.5 3.9E+02 0.0084 32.3 32.5 136 409-558 725-872 (1172)
63 KOG1242 Protein containing ada 58.3 3.7E+02 0.008 31.6 21.3 256 422-730 197-460 (569)
64 PLN03200 cellulose synthase-in 56.7 7.3E+02 0.016 34.6 33.6 506 5-625 379-934 (2102)
65 KOG1059 Vesicle coat complex A 55.1 4.5E+02 0.0097 31.7 27.2 44 518-561 170-215 (877)
66 PF13646 HEAT_2: HEAT repeats; 55.1 32 0.0007 28.9 5.8 57 8-70 31-87 (88)
67 KOG0166 Karyopherin (importin) 54.5 4E+02 0.0088 31.0 15.5 233 456-733 127-374 (514)
68 PF08064 UME: UME (NUC010) dom 54.5 1.1E+02 0.0024 27.2 9.2 75 543-623 31-105 (107)
69 KOG4653 Uncharacterized conser 54.5 5E+02 0.011 32.0 18.7 178 511-726 746-929 (982)
70 KOG2160 Armadillo/beta-catenin 54.2 3.3E+02 0.0071 29.8 14.1 146 450-606 93-246 (342)
71 KOG2081 Nuclear transport regu 53.6 4.2E+02 0.0091 30.9 24.8 222 682-920 152-387 (559)
72 COG5240 SEC21 Vesicle coat com 50.5 3.9E+02 0.0084 31.2 14.1 85 5-98 300-385 (898)
73 KOG4541 Nuclear transport rece 49.3 4.8E+02 0.01 30.3 26.6 45 789-833 568-612 (748)
74 smart00802 UME Domain in UVSB 45.7 2.1E+02 0.0045 25.6 9.3 90 528-623 10-105 (107)
75 PF01603 B56: Protein phosphat 39.8 6.2E+02 0.013 28.8 17.6 50 796-848 273-322 (409)
76 KOG1059 Vesicle coat complex A 39.0 7.8E+02 0.017 29.8 32.9 221 82-358 138-364 (877)
77 KOG2956 CLIP-associating prote 37.8 6.7E+02 0.015 28.7 17.6 200 481-728 286-491 (516)
78 PF08623 TIP120: TATA-binding 37.6 2.2E+02 0.0048 27.8 8.8 106 791-919 40-145 (169)
79 PF12717 Cnd1: non-SMC mitotic 37.3 81 0.0018 31.1 6.2 47 511-557 7-55 (178)
80 PF08506 Cse1: Cse1; InterPro 35.8 4E+02 0.0087 29.8 11.9 125 704-839 229-362 (370)
81 PF08064 UME: UME (NUC010) dom 35.3 3.2E+02 0.007 24.3 9.3 51 680-735 53-104 (107)
82 PF11707 Npa1: Ribosome 60S bi 35.0 3.4E+02 0.0075 29.8 11.2 98 791-910 69-183 (330)
83 PF10508 Proteasom_PSMB: Prote 33.4 8.5E+02 0.018 28.6 33.1 343 510-913 59-419 (503)
84 PF04388 Hamartin: Hamartin pr 32.8 6.4E+02 0.014 30.8 13.8 124 698-853 16-141 (668)
85 PF08389 Xpo1: Exportin 1-like 31.3 44 0.00094 31.5 3.1 43 509-551 106-148 (148)
86 PF10274 ParcG: Parkin co-regu 27.4 4.3E+02 0.0092 26.2 9.0 53 677-732 74-129 (183)
87 PF13251 DUF4042: Domain of un 25.6 5.2E+02 0.011 25.6 9.4 85 541-629 54-156 (182)
88 cd07064 AlkD_like_1 A new stru 25.4 2.8E+02 0.0061 28.1 7.9 63 15-87 19-83 (208)
89 KOG0915 Uncharacterized conser 25.2 1.8E+03 0.038 29.6 33.3 123 423-557 941-1069(1702)
90 PRK10236 hypothetical protein; 25.1 1.3E+02 0.0028 30.8 5.1 60 7-77 20-85 (237)
91 PF00514 Arm: Armadillo/beta-c 24.8 1.1E+02 0.0023 21.6 3.3 27 530-556 13-41 (41)
92 KOG1943 Beta-tubulin folding c 22.4 5.7E+02 0.012 32.4 10.5 83 513-601 527-612 (1133)
93 PF09184 PPP4R2: PPP4R2; Inte 22.1 5.6E+02 0.012 27.5 9.6 106 6-118 2-110 (288)
94 KOG1240 Protein kinase contain 22.1 1.7E+03 0.037 28.9 14.4 145 84-269 570-726 (1431)
95 KOG1062 Vesicle coat complex A 21.5 1.6E+03 0.034 27.7 15.6 142 681-855 140-284 (866)
96 KOG2137 Protein kinase [Signal 20.2 1.6E+03 0.034 27.3 13.2 111 583-729 362-473 (700)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-97 Score=818.76 Aligned_cols=881 Identities=18% Similarity=0.269 Sum_probs=694.3
Q ss_pred CCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCC
Q 002126 1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (962)
Q Consensus 1 ~~~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~ 80 (962)
|+.+.+++|+++|..||++++++.++.+++||++.|+||+||+++++||+.++. .++|||||.||+.||+++|++
T Consensus 1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~-----~evqyFGAltL~~ki~~~~e~ 75 (982)
T KOG2022|consen 1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS-----SEVQYFGALTLHDKINTRWEE 75 (982)
T ss_pred CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch-----hHHHHHhHHHHHHHHHhhhcc
Confidence 788889999999999999999999999999999999999999999999998774 588999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCC----CcchHHHHHHHh
Q 002126 81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQ----DNGNMAVLEMLT 154 (962)
Q Consensus 81 l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~----~~~~~~lL~iL~ 154 (962)
+|++++..|+.+++..+.+++.||+.|.||+|.+||.+.+++. .||+++.+++..++..... ...+.++|+.|+
T Consensus 76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls 155 (982)
T KOG2022|consen 76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS 155 (982)
T ss_pred CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999986 5999999999999863211 134578999999
Q ss_pred hcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccc
Q 002126 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (962)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~ 234 (962)
.+|+|.... + ++..+|..++.+|......++.++..++....+...+.-+-..+..+++|+.+|++|. ..+.
T Consensus 156 ~~p~e~q~~---~--l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i---~~~~ 227 (982)
T KOG2022|consen 156 FMPAEFQHV---T--LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI---SLTG 227 (982)
T ss_pred cCcHhhhhc---c--chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh---cccc
Confidence 999998643 2 7788999999999999999999888887765432100001146688999999999975 2232
Q ss_pred hhhhhcchHHHHHHhcCC--CCcHHHHHHHH---------------HHHHhcCC--ChhH---HHHhhhhh-hHHhhh-h
Q 002126 235 GSLAAHPLLNFVFNSLQV--QSSFDVAIEVL---------------VELVGRHE--GLPQ---ALLCRVPF-LKELLL-L 290 (962)
Q Consensus 235 ~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l---------------~eil~~~~--~~~~---~l~~~~~~-l~~~~~-~ 290 (962)
. ....++..++..+.. ....+++-+|+ +..+...+ .|.+ .|++-+.+ +++.-. .
T Consensus 228 ~--~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~ 305 (982)
T KOG2022|consen 228 M--DCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI 305 (982)
T ss_pred c--cHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 2 233455555555541 11122222222 11111111 1222 23333333 222111 0
Q ss_pred hhhccCc--HhHHhhHHHHHHHHhHhhhHHHHhc------ChhHHHHHHHHHhcccCCCCCchhh----hhhHHHHHHHH
Q 002126 291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEA------SPEALALADALLSCVAFPSEDWEIA----DSTLQFWSTLA 358 (962)
Q Consensus 291 ~~~~~~d--~d~~~~l~~l~~~~~e~~~~~l~~~------~~~~~~ll~~ll~~~~~p~~d~~v~----~~t~~FW~~l~ 358 (962)
....+.| +|....++++++..+|++.+.+.++ +..+.++++.|+.|+++||+ |++. ..|+.|||+|+
T Consensus 306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~-ypveE~~S~~~l~FW~tL~ 384 (982)
T KOG2022|consen 306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQ-YPVEEIVSDRTLIFWYTLQ 384 (982)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCC-ccHHHHHhHHHHHHHHHHH
Confidence 2334555 7778899999999999999998764 23467999999999999995 6654 47999999999
Q ss_pred HHHhhcchhhhhhhhhhhhhhH-HHHHHHHHHHHHHhccCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHH-
Q 002126 359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDES-SFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT- 435 (962)
Q Consensus 359 e~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~k~~~p~~-~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~- 435 (962)
|++..+..++. +.....|+ |+|.+|++++++|+.+|.+ .|. .|..|++|.|++||+|++|+++++|.++|+..
T Consensus 385 dei~~~~~e~~---~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~-~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll 460 (982)
T KOG2022|consen 385 DEIMQTINETQ---QIKKQILSQQIYAQLVEILLKKLALPSKEIWL-SWSSDSREQFESYRKDISDLLMSSYSILGDGLL 460 (982)
T ss_pred HHHHHhhhccC---CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99987655432 22334555 9999999999999999988 455 69999999999999999999999999999642
Q ss_pred -HHHHHHHhhhcCCC-CCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHH
Q 002126 436 -FIQKVFFGSWGSAN-VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVI 513 (962)
Q Consensus 436 -~l~~~~~~l~~~~~-~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~i 513 (962)
++.+.++++...+. .+.+|++.|+|+|++.++++.+..+++ +.+..++...++.+....+ +.+. .|.+.+|
T Consensus 461 ~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~n--~ql~-~Tss~~i 533 (982)
T KOG2022|consen 461 DFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAPN--PQLL-STSSDLI 533 (982)
T ss_pred HHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccCC--hhHH-HHHHHHH
Confidence 44555555544443 456799999999999999999986554 5666666655433221000 1133 3557999
Q ss_pred HhhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHH-HHHHHhcCCChhhHHHHH
Q 002126 514 GSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWI-GEALEKRHLPLEDEEEVV 592 (962)
Q Consensus 514 g~ys~wl~~~p~~L~~vL~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~-~~~l~~~~l~~~~~~~l~ 592 (962)
|.|+.|+..||.||++.++.++.++++++....|..++++||++|+.+|. | +.+.+... ++.+.....++.++.+++
T Consensus 534 gs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~-p-y~d~~~a~~~e~l~~~~~~~S~~~klm 611 (982)
T KOG2022|consen 534 GSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLD-P-YADQFSAVCYEVLNKSNAKDSDRLKLM 611 (982)
T ss_pred HHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCc-h-HHHHHHHHHHHHhcccccCchHHHHHH
Confidence 99999999999999999999999999999888889999999999999995 3 66665555 555566788899999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCC---
Q 002126 593 GAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPT--- 669 (962)
Q Consensus 593 eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~--- 669 (962)
.+||+|++.+.++| +.+++.++++|++++++.++....+ +++. .+. .+-.+.+++++|..+..+.+.
T Consensus 612 ~sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~-----~~e~---~l~-~~~~l~~iS~LftSL~~~~~~~d~ 681 (982)
T KOG2022|consen 612 KSIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGID-----DQEN---HLR-IAFQLNTISALFTSLINKKDIIDT 681 (982)
T ss_pred HHHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCC-----CHHH---HHH-HHHHHHHHHHHHhccCCCCccccc
Confidence 99999999999777 6899999999999999999776533 2221 122 234467777888877654321
Q ss_pred CCC-------CCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHHHHhhhhhcC
Q 002126 670 NPA-------GDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-VTLLPQVLDCLSTNFVSFQN 741 (962)
Q Consensus 670 ~~~-------~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~-~p~l~~~~~~l~~~f~~~~~ 741 (962)
+.. +..|++.++++++|+++.++. +|.++.+++|++|.+++++++++++.+ .|++|.++.++.. |... +
T Consensus 682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~-~ 758 (982)
T KOG2022|consen 682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTS-C 758 (982)
T ss_pred cchhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccc-h
Confidence 000 113788899999999999999 899999999999999999999998887 8999999999987 7654 5
Q ss_pred cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhch
Q 002126 742 HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALL 821 (962)
Q Consensus 742 ~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l 821 (962)
...-+.+...++..+..++.+.+.+...+..+.+.+ +..+.+. .+.++||+.+.+|+|+..++++.|+.+.++...+-
T Consensus 759 ~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~s-l~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~t 836 (982)
T KOG2022|consen 759 LAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQS-LLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFT 836 (982)
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH-HHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHH
Confidence 555677888888888777788888888777666665 5556553 47999999999999999999999999998654454
Q ss_pred HHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccc
Q 002126 822 EVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSR 901 (962)
Q Consensus 822 ~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rs~ 901 (962)
..++.+++..++.+|+.++|++++||+.|+...++ ++.+.+.+++.+.|+.|+.++|+|+||.+|||.
T Consensus 837 s~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s------------~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ 904 (982)
T KOG2022|consen 837 SLILICAFILLNSPEPTTIRAASQFLTALATYATS------------HDLVTVTSVVAEIGPILIYAIMRGVGGEASRST 904 (982)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc------------chhHHHHHHHHhcchHHHHHHHHHhcCcCccch
Confidence 55666999999999999999999999998876543 235789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhcccchhhccchhHHHHHHHHHHhhhhhhcCCC
Q 002126 902 VHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLILIGAG 951 (962)
Q Consensus 902 ~~~~~~iL~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~l~~~~~~~~~~ 951 (962)
+|.++|||++|+ ++|+..++.|+.++| +.|++|..|
T Consensus 905 ld~~aDIL~al~-------------~k~~se~r~wl~~~l-q~~gfPs~~ 940 (982)
T KOG2022|consen 905 LDALADILLALN-------------AKFFSETRTWLKAVL-QIPGFPSAG 940 (982)
T ss_pred hHHHHHHHHHHH-------------HhhhHHHHHHHHHHh-cCCCCCccc
Confidence 999999999999 899999999999999 778887555
No 2
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-71 Score=594.76 Aligned_cols=549 Identities=25% Similarity=0.394 Sum_probs=482.5
Q ss_pred HHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCCH
Q 002126 26 VAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPP 105 (962)
Q Consensus 26 ~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr~~Ll~~l~~~~~~~~ 105 (962)
.+|+.||++||+|+++|++|.++|+.. .+.+..+|||||+|.||+++|++||+.++.++|++|+.|+.....++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-----~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~ 76 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-----CDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPD 76 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-----chHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCc
Confidence 479999999999999999999999875 358999999999999999999999999999999999999998877777
Q ss_pred HHHHHHHHHHHHHHhhhccCCchHHHHHHHhhcccCCCcchHHHHHHHhhcccccccccccccCCCHHHHHHHHHHHHhh
Q 002126 106 QLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185 (962)
Q Consensus 106 ~v~~kL~~aLa~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~ 185 (962)
.+++||+.++|+++++++.|.|++.+++...++. +...+.+|++|+++|||+.+.+. + ....||.++++++...
T Consensus 77 ~i~tQL~vavA~Lal~~~~W~n~I~e~v~~~~~~---~~~~~~lLeiL~VlPEE~~~~~~-~--~~a~Rr~e~~~~l~~~ 150 (559)
T KOG2081|consen 77 VIRTQLAVAVAALALHMPEWVNPIFELVRALSNK---HPAVPILLEILKVLPEETRDIRL-T--VGANRRHEFIDELAAQ 150 (559)
T ss_pred hHHHHHHHHHHHHHHHhHhhcchHHHHHHHhhcC---CccHHHHHHHHHhCcHhhcchhh-h--hhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999874 33478999999999999975432 2 6789999999999999
Q ss_pred hhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhc-chHHHHHHhcCCCCcHHHHHHHHH
Q 002126 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAH-PLLNFVFNSLQVQSSFDVAIEVLV 264 (962)
Q Consensus 186 ~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~-~ll~~~~~~L~~~~~~~~a~~~l~ 264 (962)
++.++.++..+++.... +..+...++|+|+.||.+++ .++.+.+.+. +++.++|..++++++.+.|++|++
T Consensus 151 ~~~~L~~l~~lLe~~~l-----~~~~~l~~Vl~~l~SWl~~~---~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic 222 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDL-----KSSDDLEQVLRCLGSWLRLH---VFPPDQVLASFPLITLAFRSLSDDELHEEATECIC 222 (559)
T ss_pred HHHHHHHHHHHHhhcCC-----ChhhHHHHHHHHHhhhhhhc---cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHH
Confidence 99999999999987643 22467899999999999987 6788887555 999999999999999999999999
Q ss_pred HHHhcCC------ChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhcChhHHHHHHHHHhccc
Q 002126 265 ELVGRHE------GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVA 338 (962)
Q Consensus 265 eil~~~~------~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~ 338 (962)
.+++... .+...++..+.-+...++ .+...+|.|...++||+|+++||+|...+..++++++..++.+|.+++
T Consensus 223 ~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~-~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~ 301 (559)
T KOG2081|consen 223 ALLYCSLDRSEGLPLAAILFIGVIILETAFH-LAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAG 301 (559)
T ss_pred HHHHHhhhhhccCchhHHHhccccccchHHH-HhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhcc
Confidence 9988542 244444433333333343 467889999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHH
Q 002126 339 FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRM 418 (962)
Q Consensus 339 ~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~ 418 (962)
|+ |++|.+.||.|||.+++.++..+++ .....|+|+|.+++..+.++++||++. ++..|+.++|.+||.
T Consensus 302 h~--~~evie~SF~fW~~lse~l~~~~~~------~~~~~frpy~~rLvs~l~~h~qlp~~~---~~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 302 HN--DTEVIEASFNFWYSLSEELTLTDDD------EALGIFRPYFLRLVSLLKRHVQLPPDQ---FDLPEEESEFFEFRL 370 (559)
T ss_pred CC--chhhhhhhHHhhhhhHHHHhccccH------HHHHHhHHHHHHHHHHHHHHccCCCcc---ccCccchhHHHHHHH
Confidence 98 7899999999999999998754432 456799999999999999999999864 345578899999999
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhh
Q 002126 419 NLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEEL 498 (962)
Q Consensus 419 ~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~ 498 (962)
.++|+++|+..++|.+.++.+++..+.. ++.+|+.+||+||+|++++..++.+++.. +|.|++++.++|...+
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e---~~~~We~~EAaLF~l~~~~~~~~~~e~~i-~pevl~~i~nlp~Q~~--- 443 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKE---NNASWEEVEAALFILRAVAKNVSPEENTI-MPEVLKLICNLPEQAP--- 443 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcc---CCCchHHHHHHHHHHHHHhccCCccccch-HHHHHHHHhCCccchh---
Confidence 9999999999999999999999998755 46789999999999999999999877643 7889999888887655
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHH
Q 002126 499 KGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEAL 578 (962)
Q Consensus 499 ~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l 578 (962)
+|||++ .++|+|++|++.||+++.++++|++.++...+++++|+.++.++|..|+..+. .+.+.+..+...+
T Consensus 444 -----~~~ts~-ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~--~l~~~~~~l~~~l 515 (559)
T KOG2081|consen 444 -----LRYTSI-LLLGEYSEWVEQHPELLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMT--CLIPSLLELIRSL 515 (559)
T ss_pred -----HHHHHH-HHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 678785 89999999999999999999999999999888999999999999999999884 4999999998888
Q ss_pred HhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Q 002126 579 EKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEA 622 (962)
Q Consensus 579 ~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~ 622 (962)
.....+.+... +++|++.++..+|.++ .+..++.++.|.+..
T Consensus 516 ~~~~~~~e~a~-l~~~~s~i~~~lp~~k-~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 516 DSTQINEEAAC-LLQGISLIISNLPAHK-AKIALEELCEPQLRN 557 (559)
T ss_pred HHHhccHHHHH-HHHHHHHHHhcCCHhh-hhHHHHHHhhHHHhc
Confidence 87777777777 9999999999999987 478899999887754
No 3
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-55 Score=473.79 Aligned_cols=762 Identities=15% Similarity=0.154 Sum_probs=564.5
Q ss_pred HHHHHHHHHhcCC-CChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHH
Q 002126 7 IKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (962)
Q Consensus 7 ~~v~~ai~~ly~~-~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~ 85 (962)
++|+|||.+...+ .|+..|+||-+|+++++.||.||++|.++|... +.++.+|||+.|||..+++...++.+..+
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~----ts~d~vkf~clqtL~e~vrekyne~nl~e 78 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINE----TSNDLVKFYCLQTLIELVREKYNEANLNE 78 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhh----cccchhhhhhHHHHHHHHHHhhccCCHHH
Confidence 4889999998875 799999999999999999999999999999864 35689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--c----CCCHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhcc
Q 002126 86 KDALLNALLVAAKRF--S----SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (962)
Q Consensus 86 ~~~Lr~~Ll~~l~~~--~----~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (962)
+..+|.+++.|+... . .+|.+|+||++..|+.|+..++ .|++++.|++..+..++ ...+....+.+|-.+.
T Consensus 79 lqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s-~~~~~dfflkvllaId 157 (980)
T KOG2021|consen 79 LQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDS-AISGLDFFLKVLLAID 157 (980)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc-chhhHHHHHHHHHHhh
Confidence 999999999999642 2 2588999999999999999987 59999999999997632 2345789999999999
Q ss_pred cccccccccccCCCHHHHHHHHHHHHh-hhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchh
Q 002126 158 EEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGS 236 (962)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~ 236 (962)
.|+.|...+++.-...+-+.+++.|++ .++.+.+.+-+++....+. .++.+...+|+|+++|+. ||+.+.
T Consensus 158 sEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~----~npgl~~~cLdc~g~fVS-----WIdInL 228 (980)
T KOG2021|consen 158 SEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENI----VNPGLINSCLDCIGSFVS-----WIDINL 228 (980)
T ss_pred hHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHhh-----hhhhhh
Confidence 999988877743221233456677777 5788888887777654321 134688899999999999 889999
Q ss_pred hhhcchHHHHHHhcCCCCcHHHHHHHHHHHHhcCCChhHHH-Hhhh----hhhHHhhhhhhhccCcHhHHhhHHHHHHHH
Q 002126 237 LAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQAL-LCRV----PFLKELLLLPALTDGDEKVIGGLACLMSEI 311 (962)
Q Consensus 237 ~~~~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l-~~~~----~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~ 311 (962)
+++.++++++++.+..++++.+|++|+.+++++.++-...+ +-++ ..+.. ++ ++.+.+|.|....++++++.+
T Consensus 229 IaNd~f~nLLy~fl~ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg-~~-s~dq~~d~df~e~vskLitg~ 306 (980)
T KOG2021|consen 229 IANDYFLNLLYKFLNIEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFG-YH-SADQMDDLDFWESVSKLITGF 306 (980)
T ss_pred hhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh-hh-ccccccCchHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998633221 1122 22221 11 455678899999999999999
Q ss_pred hHhhhHHHHh----cC--------hhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhh
Q 002126 312 GQAAPSLIVE----AS--------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMF 379 (962)
Q Consensus 312 ~e~~~~~l~~----~~--------~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~ 379 (962)
|-.......+ .+ ...+..+..|++...+. ++++.--+|+||+.+.-.+-.+ +...+..
T Consensus 307 gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl--------~~ls~~q 376 (980)
T KOG2021|consen 307 GVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKL--------KALSSPQ 376 (980)
T ss_pred ceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhc--------ccccchh
Confidence 8876554432 11 23457889999999985 5688889999999865544222 1233455
Q ss_pred HHHHHHHHHHHHHHhccCCCCC-CCC-CCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHH---HHhhhcCCCCCCCc
Q 002126 380 FSVFSALLDALLLRAQVDESSF-NDD-GMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKV---FFGSWGSANVPIPW 454 (962)
Q Consensus 380 ~~~~~~L~~~l~~k~~~p~~~~-~~~-~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~---~~~l~~~~~~~~~W 454 (962)
+..+.+++.++++|+.|++.-+ .++ .+.|+++.|.+||++.. .+++....+.++.++..+ +.....+ ....+|
T Consensus 377 k~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk-~fqdti~~idpsl~l~~Ir~slS~al~n-s~e~sw 454 (980)
T KOG2021|consen 377 KVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK-NFQDTIVVIDPSLFLNNIRQSLSAALMN-SKEESW 454 (980)
T ss_pred hccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcchH
Confidence 6678899999999999987732 222 23467788999999995 666666777776544333 3332221 135679
Q ss_pred hhhhHHHHHHHhhhhccccCCCcc---chh------HHHHHHH--HhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC
Q 002126 455 KEVETKLFALNVVSEVVLQEGQAF---DFS------VIMQLVA--VLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF 523 (962)
Q Consensus 455 ~~~Ea~Lf~l~~iae~i~~~~~~~---~l~------~i~~~l~--~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~ 523 (962)
+.+|+++|.++.++|+.+.+.-.. ++. .++.++. .++.|+++.. .+.+ |++|.||..||..+
T Consensus 455 qevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lV----qLlf---mE~ivRY~kff~~e 527 (980)
T KOG2021|consen 455 QEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELV----QLLF---MELIVRYNKFFSTE 527 (980)
T ss_pred HHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHH----HHHH---HHHHHHHHHHHhcc
Confidence 999999999999999998522100 111 2222222 3567776432 2444 89999999999999
Q ss_pred hhchHHHHHHHH--HhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHH------h----cCCChhhHH
Q 002126 524 QTNARPLLLFLA--AGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALE------K----RHLPLEDEE 589 (962)
Q Consensus 524 p~~L~~vL~~l~--~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~------~----~~l~~~~~~ 589 (962)
++++|.+|++++ +|++|.+ |+.+|++.|.++.+.-++.+. |...+++..+...+. + ...+.+++.
T Consensus 528 sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlv-pfie~iln~iqdlL~~~vtt~N~~s~~lt~fddql 606 (980)
T KOG2021|consen 528 SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLV-PFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQL 606 (980)
T ss_pred hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCcCCCcCccccccccccccc
Confidence 999999999998 6888754 999999999999999999886 444556666666551 1 123467899
Q ss_pred HHHHHHHHHhcc--CCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccC
Q 002126 590 EVVGAISLILGS--VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPL 667 (962)
Q Consensus 590 ~l~eai~~vi~~--lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~ 667 (962)
.++|++|.+|.. .|.++ .+.++..+++|++.+..-....+.-.+....|+. +..+...+..+++.-+++....
T Consensus 607 yIfEtiGviI~l~n~paE~-qaay~~~litpl~~~~~igl~~a~lasde~~pv~----Ia~c~~~lmaig~lakgf~~rl 681 (980)
T KOG2021|consen 607 YIFETIGVIITLNNSPAEL-QAAYANTLITPLILDQIIGLLFAQLASDEASPVV----IAECHHILMAIGTLAKGFHIRL 681 (980)
T ss_pred eeeecceEEEeCCCCCHHH-HHHHHhcccChHHHHHHHHHHHHHHhccccccHH----HHHHHHHHHHHHHHhhcccccC
Confidence 999999999854 77766 5899999999999875543332211111112322 2334444555556666655433
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHH
Q 002126 668 PTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIR 747 (962)
Q Consensus 668 ~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~ 747 (962)
.+. .+..+..++.++..++..++. .++..+.+..++...++|++.++|+.+.|++|.+++.++.+-... ..-.|+.
T Consensus 682 -vt~-~qvg~~~vf~~~ldvil~~ls-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~k-Emvdfl~ 757 (980)
T KOG2021|consen 682 -VTE-NQVGNMVVFSNILDVILVTLS-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLK-EMVDFLG 757 (980)
T ss_pred -cch-hcccHHHHHHHHHHHHHHHHh-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHH-HHHHHHH
Confidence 111 122356678888888888887 588888999999999999999999999999999999999766544 5777999
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCC------CCCchHHHHHHHHHHHHHhhhHHHHhh
Q 002126 748 TASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICD------QEPDLVEAYTNFASTFVRTSRKEVLAA 816 (962)
Q Consensus 748 l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~------~~pD~~~~~f~l~~~~l~~~p~~~l~~ 816 (962)
+++++++.|+. ++.+.+.+|+..+.... +..+.....+. +.-++..+|++|+..++.+--..++.+
T Consensus 758 flsQLihkfk~--~~~~ilnqmlppll~rI-fsvi~r~a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat 829 (980)
T KOG2021|consen 758 FLSQLIHKFKT--DCYQILNQMLPPLLNRI-FSVIERIAKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILAT 829 (980)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHhcccCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 99999999995 56677888887776665 55554322222 223456779999999998755444443
No 4
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=5.6e-51 Score=434.06 Aligned_cols=853 Identities=12% Similarity=0.136 Sum_probs=590.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHH
Q 002126 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (962)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~ 85 (962)
++-+.+.|.++|.+ +...++||++.|.+||..|+||+-++++|+... .++.+|.|.+.|..-|.+.|.-+|+++
T Consensus 13 iallDkVVttfyqg-~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~-----~pqskyiALs~LdklIttkWkllp~~~ 86 (1053)
T COG5101 13 IALLDKVVTTFYQG-DGRKQEQAQRILTKFQELPDAWTKADYILNNSK-----LPQSKYIALSLLDKLITTKWKLLPEGM 86 (1053)
T ss_pred HHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhCchHHHHHHHHHhccc-----CcchhhhHHHHHHHHHHhhhhhCCcHH
Confidence 55778899999954 556789999999999999999999999998754 469999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhcc
Q 002126 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (962)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (962)
+.+||+.+++.+...+++ .+.+++|+-.+|..++.+.| .||++|++++...+. +-+.++..+.+|+.|.
T Consensus 87 r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~---s~~vCeNnmivLklLs 163 (1053)
T COG5101 87 RQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI---SMEVCENNMIVLKLLS 163 (1053)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc---hHHHHhccHHHHHHhH
Confidence 999999999998775532 36899999999999999987 699999999987664 3456788899999999
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhh
Q 002126 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (962)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~ 237 (962)
||+.+...-. ++..+...++..|....+.++.++.+++++..+ +++..+.|+.+..++. |+|.+.+
T Consensus 164 EEvFdfSaeq--mTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~-------~SLi~ATLesllrfl~-----wiPl~yI 229 (1053)
T COG5101 164 EEVFDFSAEQ--MTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRD-------ESLIEATLESLLRFLE-----WIPLDYI 229 (1053)
T ss_pred HHHHhccHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHh-----hCchhHH
Confidence 9999875433 566677778888888999999999999998653 3455454444443333 3444567
Q ss_pred hhcchHHHHHHhc-CCCCcHHHHHHHHHHHHhcCC-----Chh--------HHHHhhhh--------hhHHhhhhhhhcc
Q 002126 238 AAHPLLNFVFNSL-QVQSSFDVAIEVLVELVGRHE-----GLP--------QALLCRVP--------FLKELLLLPALTD 295 (962)
Q Consensus 238 ~~~~ll~~~~~~L-~~~~~~~~a~~~l~eil~~~~-----~~~--------~~l~~~~~--------~l~~~~~~~~~~~ 295 (962)
..+.+++++.+.+ +.|+.+.++++|+.|+.+..+ +.. +.+....+ .+.+.|. ....
T Consensus 230 feTnIieLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~--~~~~ 307 (1053)
T COG5101 230 FETNIIELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYG--GMDK 307 (1053)
T ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHc--ccCh
Confidence 7888999888555 468889999999999988652 111 11111111 1122221 1123
Q ss_pred CcHhHHhhHHHHHHHHhHhhhHHHHhcC-h-hHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcc--------
Q 002126 296 GDEKVIGGLACLMSEIGQAAPSLIVEAS-P-EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD-------- 365 (962)
Q Consensus 296 ~d~d~~~~l~~l~~~~~e~~~~~l~~~~-~-~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~-------- 365 (962)
.+.+.++++|.+++++-+.|..++.... . ..+.-...|++++... +.++...++++|..|.-++++--
T Consensus 308 neq~Fvq~LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrIn--ereiFkt~leyW~klVadLy~E~q~lp~tem 385 (1053)
T COG5101 308 NEQIFVQKLAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRIN--EREIFKTALEYWNKLVADLYSEFQRLPATEM 385 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 3456889999999999999999886532 2 2345578888888885 68999999999999877665211
Q ss_pred -h---------------hhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHH---------HHHHHH
Q 002126 366 -A---------------SIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLV---------QFRMNL 420 (962)
Q Consensus 366 -~---------------~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~---------~fR~~~ 420 (962)
. ...+..+-+...|..++++|.-+++.+|.-|++.+--+. |+.+-.+ ++-+.+
T Consensus 386 ~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVen--degEivRefvketDtI~lYksm 463 (1053)
T COG5101 386 SPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVEN--DEGEIVREFVKETDTIELYKSM 463 (1053)
T ss_pred CcchhccccchhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEEC--CCcHHHHHHhccccHhHHHHHH
Confidence 0 001112335567889999999999999999998431001 1222222 223456
Q ss_pred HHHHHHHHHhcCcH--HHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhh
Q 002126 421 VELLVDICQLLRSA--TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEEL 498 (962)
Q Consensus 421 ~d~l~~~~~il~~~--~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~ 498 (962)
.+++.+..++.-.+ .++...+.+. -.+..++|+.+...+|++++|++.+.++++.-.+..+.+-+..+......
T Consensus 464 RevLvyLthL~v~Dte~~mi~Klarq--~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrg-- 539 (1053)
T COG5101 464 REVLVYLTHLIVDDTEKYMIGKLARQ--LDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRG-- 539 (1053)
T ss_pred hhHHHHHhhhhhhhHHHHHHHHHHHH--hcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 67777777764332 2222222221 12357999999999999999999998754421123344434444432111
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCCCc---cHHHHHH
Q 002126 499 KGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPS---NLEILMW 573 (962)
Q Consensus 499 ~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~p~---~~~~l~~ 573 (962)
+..++|+.+.+|+++|+|.+|++.|+.||..++..+|+.++. ..++.+||.+|-+|.+.|+.+++..+ ..+.+..
T Consensus 540 KdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~ 619 (1053)
T COG5101 540 KDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVY 619 (1053)
T ss_pred CCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHH
Confidence 112468889999999999999999999999999999999995 55999999999999999998875321 3577888
Q ss_pred HHHHHH--hcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC-chhhHHHhHH-H
Q 002126 574 IGEALE--KRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHN-PATYTQILSS-A 649 (962)
Q Consensus 574 ~~~~l~--~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~-~ 649 (962)
+++.+. .+++.+.....+|||+|.+|+..|........+..+++-....|.++..++..+..+.. +... ..++. .
T Consensus 620 Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tv-ki~an~~ 698 (1053)
T COG5101 620 IIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTV-KIDANKM 698 (1053)
T ss_pred HHHhhhhhcccCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHH-HHHHHHH
Confidence 888774 57888999999999999999999997766777888888888888888776643211111 1100 00000 0
Q ss_pred HHHHHhhhhhcccccccCCCCCCCCchHHH---HHHHHHHHHHHHHHh-----hhc--cchH-HHHHHHHHHHHHHHh--
Q 002126 650 TRGLYRMGTVFSHLPVPLPTNPAGDDPIFA---LLRVFWPMLEKLFRS-----EHM--ENGN-LSTAACRALSLAIQS-- 716 (962)
Q Consensus 650 ~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~---~~~~i~~~l~~i~~~-----~~~--~~~~-v~e~~c~~~~~~~~~-- 716 (962)
...+....++..++-|.. ...-+.. .+-...-+-..+... +.+ +.-. |-..+..++..-+..
T Consensus 699 ktnVa~ctslg~~fyPq~-----~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~ 773 (1053)
T COG5101 699 KTNVAKCTSLGYRFYPQT-----CSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKAR 773 (1053)
T ss_pred HHHHHHHhhcccccchHH-----HHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhh
Confidence 001111111222211111 0000111 111111111111110 000 0000 111111222111211
Q ss_pred -hhhhhHhhHHHHHHHHHHhhhhhcC---cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCC
Q 002126 717 -SGQHFVTLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEP 792 (962)
Q Consensus 717 -l~~~~~p~l~~~~~~l~~~f~~~~~---~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~p 792 (962)
+..--..+++++++.++-+|....| .+..|.+.+.+|...++- ......-.+.....++ +.++. .+++++|
T Consensus 774 dl~~V~n~lv~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~--i~~~~~l~l~svf~ct-l~mi~--kdf~Eyp 848 (1053)
T COG5101 774 DLKFVQNDLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESV--IYLQRELFLISVFICT-LIMIV--KDFDEYP 848 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHhhh-HHHHH--hhhhhCh
Confidence 1111235778899999988875433 566899999999988742 1111111122333444 34443 3779999
Q ss_pred chHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHH
Q 002126 793 DLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNA 872 (962)
Q Consensus 793 D~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~ 872 (962)
|+..+||.|+..+..++...|+.-+.+.+..+.+..++++.+..|++...++..+..++..+... + + .
T Consensus 849 Ehr~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~m----g--~------~ 916 (1053)
T COG5101 849 EHRKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEM----G--V------P 916 (1053)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHh----C--C------c
Confidence 99999999999999999999998777889999999999999999999999999999999877642 1 1 4
Q ss_pred HHHHHHHhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHH
Q 002126 873 MAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAA 914 (962)
Q Consensus 873 ~~~~~~~~~G~~Lv~~ll~~~~g~~~rs~~~~~~~iL~~l~~ 914 (962)
.+.++..++.-.++..++.-+.+.-++|+++..+-+|..|+.
T Consensus 917 ~~n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q~Llla~li~ 958 (1053)
T COG5101 917 FINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIR 958 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHeeeeccchhccchHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999983
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-34 Score=305.39 Aligned_cols=711 Identities=15% Similarity=0.142 Sum_probs=457.1
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHH
Q 002126 7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAK 86 (962)
Q Consensus 7 ~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~ 86 (962)
.+|.+.++.- .+||++.++.++.-|.+|+.-|+--.+-..+|...+ +.+..+|--|...|++.++.+|.+.+++..
T Consensus 13 ~ql~~lLk~s-~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~---~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~ 88 (885)
T KOG2023|consen 13 QQLAQLLKNS-QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAK---SEDVPTRSLAGLLLKNNVRGHYNSIPSEVL 88 (885)
T ss_pred HHHHHHHHhc-cCCChHHHHHHHHHHHHHhcccchhceeeEEEeccc---ccchhHHHHhhhhHhccccccccCCChHHH
Confidence 3444444442 268899999999999999999999998888888755 467889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhccccccccc
Q 002126 87 DALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQ 164 (962)
Q Consensus 87 ~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~ 164 (962)
..+|..++..+. ..++.|++.....++.++-... .||+.++.+.+.+.+. +.+.++..+.-|+.+.|+...
T Consensus 89 ~yiKs~~l~~lg---d~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~--d~n~~EgA~~AL~KIcEDsa~-- 161 (885)
T KOG2023|consen 89 DYIKSECLHGLG---DASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSP--DYNTCEGAFGALQKICEDSAQ-- 161 (885)
T ss_pred HHHHHHHHhhcc---CchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCC--cccccchhHHHHHHHHhhhHH--
Confidence 999999988775 3456888888888888877654 7999999999999763 234556667777777776431
Q ss_pred ccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcchHH
Q 002126 165 ASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLN 244 (962)
Q Consensus 165 ~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~ 244 (962)
..++.. ..+-|.--.+..++|..+ ++++++..++.|++..|-.. ...++
T Consensus 162 ~lds~~-------~~rpl~~mipkfl~f~~h------------~spkiRs~A~~cvNq~i~~~-----------~qal~- 210 (885)
T KOG2023|consen 162 FLDSDV-------LTRPLNIMIPKFLQFFKH------------PSPKIRSHAVGCVNQFIIIQ-----------TQALY- 210 (885)
T ss_pred HHhhhc-------ccCchHHhHHHHHHHHhC------------CChhHHHHHHhhhhheeecC-----------cHHHH-
Confidence 111000 011222245555555543 34579999999999887632 11111
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhcCh
Q 002126 245 FVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASP 324 (962)
Q Consensus 245 ~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~ 324 (962)
..+|-+.| .+.. ..+++|.+..+++|+-|+-+.|..+..++.|
T Consensus 211 -------------~~iD~Fle---------------------~lFa-lanD~~~eVRk~vC~alv~Llevr~dkl~ph-- 253 (885)
T KOG2023|consen 211 -------------VHIDKFLE---------------------ILFA-LANDEDPEVRKNVCRALVFLLEVRPDKLVPH-- 253 (885)
T ss_pred -------------HHHHHHHH---------------------HHHH-HccCCCHHHHHHHHHHHHHHHHhcHHhcccc--
Confidence 11121111 1111 2267788899999999999999988888754
Q ss_pred hHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCC---
Q 002126 325 EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF--- 401 (962)
Q Consensus 325 ~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~--- 401 (962)
...+++.||+.+..+ |++|+-.+.|||..++|. +-..+...|++.+++.+++.+|.|.+++.
T Consensus 254 -l~~IveyML~~tqd~--dE~VALEACEFwla~aeq------------pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL 318 (885)
T KOG2023|consen 254 -LDNIVEYMLQRTQDV--DENVALEACEFWLALAEQ------------PICKEVLQPYLDKLIPVLLSGMVYSDDDIILL 318 (885)
T ss_pred -hHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcC------------cCcHHHHHHHHHHHHHHHHccCccccccHHHh
Confidence 456889999999886 788999999999999874 23456789999999999999999965421
Q ss_pred C-CCC-----------------------------------CCCCCchHHH--HHHHHHHHHHHHHHhcCcHHHHHHHHHh
Q 002126 402 N-DDG-----------------------------------MVDLPDGLVQ--FRMNLVELLVDICQLLRSATFIQKVFFG 443 (962)
Q Consensus 402 ~-~~~-----------------------------------~~d~~d~f~~--fR~~~~d~l~~~~~il~~~~~l~~~~~~ 443 (962)
. +++ +.|++|.|.+ .|+--+-.+.-...+.|.+ +|..++--
T Consensus 319 ~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~Pl 397 (885)
T KOG2023|consen 319 KNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPL 397 (885)
T ss_pred cCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHH
Confidence 0 000 0012222333 3444443444444555644 45554443
Q ss_pred hhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC
Q 002126 444 SWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF 523 (962)
Q Consensus 444 l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~ 523 (962)
+.. ...+..|-..||+.+++++|||++-..-.. .+|.+..++..+.+..++ -||..| |++++||+.|+-..
T Consensus 398 Lk~-~L~~~~W~vrEagvLAlGAIAEGcM~g~~p-~LpeLip~l~~~L~DKkp------lVRsIT-CWTLsRys~wv~~~ 468 (885)
T KOG2023|consen 398 LKE-HLSSEEWKVREAGVLALGAIAEGCMQGFVP-HLPELIPFLLSLLDDKKP------LVRSIT-CWTLSRYSKWVVQD 468 (885)
T ss_pred HHH-HcCcchhhhhhhhHHHHHHHHHHHhhhccc-chHHHHHHHHHHhccCcc------ceeeee-eeeHhhhhhhHhcC
Confidence 322 113467999999999999999998753332 266666655555443331 256667 59999999998763
Q ss_pred h--hchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHh
Q 002126 524 Q--TNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLIL 599 (962)
Q Consensus 524 p--~~L~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (962)
+ +|+.++|.-+++.+-+ ..|+.+|+.||..+-++....|+ |+...+|.++...+..++ .....-+|.|||.+.
T Consensus 469 ~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV-p~l~~IL~~l~~af~kYQ--~KNLlILYDAIgtlA 545 (885)
T KOG2023|consen 469 SRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELV-PYLEYILDQLVFAFGKYQ--KKNLLILYDAIGTLA 545 (885)
T ss_pred ChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHHHh--hcceehHHHHHHHHH
Confidence 3 6999999999988875 55999999999999999888886 444445566665554433 345677888999888
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCch-HH
Q 002126 600 GSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDP-IF 678 (962)
Q Consensus 600 ~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p-~~ 678 (962)
..+...-....|++.++.|++++|+.+-+.+ +.. .-.++|++++-+.++.+. -| +-
T Consensus 546 dsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D--------KdL--------fPLLEClSsia~AL~~gF-------~P~~~ 602 (885)
T KOG2023|consen 546 DSVGHALNKPAYIQILMPPLIEKWELLSDSD--------KDL--------FPLLECLSSIASALGVGF-------LPYAQ 602 (885)
T ss_pred HHHHHhcCcHHHHHHhccHHHHHHHhcCccc--------chH--------HHHHHHHHHHHHHHhccc-------cccCH
Confidence 7665443357889999999999999875543 222 234666666665555432 11 12
Q ss_pred HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcC
Q 002126 679 ALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGH 758 (962)
Q Consensus 679 ~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~ 758 (962)
++++.++.++...++ .....-. ++- ...+.+. ..-+-|.+.+-++...|+
T Consensus 603 ~Vy~Rc~~il~~t~q----------------------~~~~~~~---~~~----~~~pdkd-fiI~sLDL~SGLaegLg~ 652 (885)
T KOG2023|consen 603 PVYQRCFRILQKTLQ----------------------LLAKVQQ---DPT----VEAPDKD-FIIVSLDLLSGLAEGLGS 652 (885)
T ss_pred HHHHHHHHHHHHHHH----------------------HHHhccC---Ccc----ccCCCcc-eEEEeHHHHhHHHHHhhh
Confidence 233444444433321 1100000 000 0011111 344568889999988887
Q ss_pred CCCccchHHH--HHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCc
Q 002126 759 KDEYGPLFVT--TFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH 836 (962)
Q Consensus 759 ~~~~~~~l~~--l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e 836 (962)
.-+ +.+.+ +..-+.++ ..+.-|||.++.|.|++.+.+.|+..+.+. +..++......+....
T Consensus 653 ~ie--~Lva~snl~~lll~C----------~~D~~peVRQS~FALLGDltk~c~~~v~p~----~~~fl~~lg~Nl~~~~ 716 (885)
T KOG2023|consen 653 HIE--PLVAQSNLLDLLLQC----------LQDEVPEVRQSAFALLGDLTKACFEHVIPN----LADFLPILGANLNPEN 716 (885)
T ss_pred chH--HHhhhccHHHHHHHH----------hccCChHHHHHHHHHHHHHHHHHHHhccch----HHHHHHHHhhcCChhh
Confidence 421 11111 11111122 236779999999999999999999988754 4444444444455555
Q ss_pred hhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhc-CCCcccchhhHHHHHHHHH
Q 002126 837 RGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALL-GVSAMSRVHKCATILQQLA 913 (962)
Q Consensus 837 ~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~-g~~~rs~~~~~~~iL~~l~ 913 (962)
..++..|+--+.++-...+. ..+ ++-..++..++.-+- -..|++.+++.+-.+..|.
T Consensus 717 isv~nNA~WAiGeia~k~g~----------------~~~----~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg 774 (885)
T KOG2023|consen 717 ISVCNNAIWAIGEIALKMGL----------------KMK----QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLG 774 (885)
T ss_pred chHHHHHHHHHHHHHHHhch----------------hhh----hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhh
Confidence 55555555433333322111 011 222233333333332 3567777777777766666
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-30 Score=294.36 Aligned_cols=602 Identities=17% Similarity=0.178 Sum_probs=430.3
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHH
Q 002126 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (962)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~ 85 (962)
+..+.+.+..|. .||+++|++|++-|+..-+++..-..-..++.+ +.++++|.+||..+|+.+.+.|..+++|.
T Consensus 3 ~~~l~qLl~~l~-spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-----~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 3 SAPLEQLLQQLL-SPDNEVRRQAEEALETLAKTEPLLPALAHILAT-----SADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hhHHHHHHHHhc-CCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 568999999987 567888999999999766655554445555554 34679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhcccccccc
Q 002126 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDS 163 (962)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~ 163 (962)
+.+||.+|+..+.+ +..+.|++|+|.++|.++-... .||+.++-++++.++. ++...+..+.+|+.+|+-+++.
T Consensus 77 ~~siks~lL~~~~~--E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQS--ETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSP--NPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhhhccc
Confidence 99999999999987 5568899999999999998765 5999999999999873 5677899999999999988632
Q ss_pred cccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcchH
Q 002126 164 QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 (962)
Q Consensus 164 ~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll 243 (962)
+..+...+..++.+++..++ ..++..+++++.+.+.+. +...+.
T Consensus 153 ------------------~~~~~~~l~~lf~q~~~d~s--------~~vr~~a~rA~~a~~~~~---~~~~~~------- 196 (1075)
T KOG2171|consen 153 ------------------LQPHLDDLLRLFSQTMTDPS--------SPVRVAAVRALGAFAEYL---ENNKSE------- 196 (1075)
T ss_pred ------------------cchhHHHHHHHHHHhccCCc--------chHHHHHHHHHHHHHHHh---ccchHH-------
Confidence 12345677788888776542 238999999999998864 100111
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhcC
Q 002126 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEAS 323 (962)
Q Consensus 244 ~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~ 323 (962)
. +....++|+++...+ ..++++|.|.....-+.|.++.+..++++..
T Consensus 197 ------------~---------------~~~~~llP~~l~vl~----~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~-- 243 (1075)
T KOG2171|consen 197 ------------V---------------DKFRDLLPSLLNVLQ----EVIQDGDDDAAKSALEALIELLESEPKLLRP-- 243 (1075)
T ss_pred ------------H---------------HHHHHHhHHHHHHhH----hhhhccchHHHHHHHHHHHHHHhhchHHHHH--
Confidence 0 112345677766433 2456677777888889999999999888864
Q ss_pred hhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhcc-CC-CCC
Q 002126 324 PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQV-DE-SSF 401 (962)
Q Consensus 324 ~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~-p~-~~~ 401 (962)
++..++++.+.+.+...-|..+...+++|-..+.++- +.......++..+|+.+++.-|.= .. ++|
T Consensus 244 -~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A-----------p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew 311 (1075)
T KOG2171|consen 244 -HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA-----------PAMCKKLALLGHTLVPVLLAMMTEEEDDDEW 311 (1075)
T ss_pred -HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh-----------HHHhhhchhhhccHHHHHHHhcCCcccchhh
Confidence 4567888889988876556678889999999888762 233445555666777777666542 11 234
Q ss_pred CCCCCCCCCchHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccch
Q 002126 402 NDDGMVDLPDGLVQFRMNLVE-LLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDF 480 (962)
Q Consensus 402 ~~~~~~d~~d~f~~fR~~~~d-~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l 480 (962)
.++++ .|+|+ .+--+.++. .+.....-||++.++..+++.+.. ...+.+|....|+|.++++++|++.+.... .+
T Consensus 312 ~~~d~-~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~-~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l 387 (1075)
T KOG2171|consen 312 SNEDD-LDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEA-MLQSTEWKERHAALLALSVIAEGCSDVMIG-NL 387 (1075)
T ss_pred ccccc-ccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HH
Confidence 32222 22233 222233443 333344448888777777766532 124678999999999999999999863322 27
Q ss_pred hHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHH-----hChhchHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 002126 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS-----AFQTNARPLLLFLAAGISEAVSSNACASALRKIC 555 (962)
Q Consensus 481 ~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~-----~~p~~L~~vL~~l~~~l~~~~~~~~Aa~al~~lc 555 (962)
+.|++++.+..+.|+++ ||+.+ |+.||+.+.=|. .|++++++.|-++...-.+++++.+||.|+-++.
T Consensus 388 ~~Il~~Vl~~l~Dphpr------Vr~AA-~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPR------VRYAA-LNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHHHHHHHhhcCCCCHH------HHHHH-HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 88999888888888765 78877 599999998554 4778888888888888888999999999999999
Q ss_pred HHhhcccCCCccHHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 002126 556 EDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHS 634 (962)
Q Consensus 556 ~~c~~~l~~p~~~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~ 634 (962)
++|.+....| +++.|++ ....+.. .-+...++.++.+||+|..+... ...+|.+++ +.-|.+++.+..+.+
T Consensus 461 E~~~~~~l~p-YLd~lm~~~l~~L~~-~~~~~v~e~vvtaIasvA~AA~~--~F~pY~d~~----Mp~L~~~L~n~~~~d 532 (1075)
T KOG2171|consen 461 EECDKSILEP-YLDGLMEKKLLLLLQ-SSKPYVQEQAVTAIASVADAAQE--KFIPYFDRL----MPLLKNFLQNADDKD 532 (1075)
T ss_pred HhCcHHHHHH-HHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHhh--hhHhHHHHH----HHHHHHHHhCCCchh
Confidence 9999877654 7887777 4444332 33678899999999999866432 234555554 455566666553211
Q ss_pred CCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 002126 635 LIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAI 714 (962)
Q Consensus 635 ~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~ 714 (962)
.+ .|+ ...++|++.+...++ .+++.+..++++.++......--..|....+-....+.++-
T Consensus 533 ~r--------~Lr--gktmEcisli~~AVG---------ke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 533 LR--------ELR--GKTMECLSLIARAVG---------KEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred hH--------HHH--hhHHHHHHHHHHHhh---------hhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHH
Confidence 11 111 345778876665544 24456666777777777643112245556677777778888
Q ss_pred HhhhhhhHhhHHHHHHHHHHhh
Q 002126 715 QSSGQHFVTLLPQVLDCLSTNF 736 (962)
Q Consensus 715 ~~l~~~~~p~l~~~~~~l~~~f 736 (962)
+.+|+++.|++|.++..+...-
T Consensus 594 ~ilg~~F~p~L~~Vmppl~~ta 615 (1075)
T KOG2171|consen 594 RILGDDFAPFLPVVMPPLLKTA 615 (1075)
T ss_pred HHhchhhHhHHHHHhHHHHHhh
Confidence 8899999999999888777543
No 7
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-28 Score=292.26 Aligned_cols=854 Identities=15% Similarity=0.128 Sum_probs=528.2
Q ss_pred hHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCC
Q 002126 4 DLQIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (962)
Q Consensus 4 ~~~~~v~~ai~~ly~~-~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~ 82 (962)
+...++..|+.+-+++ ++.+.|.+|++.|.+||..+++|..|..+|+.. ++.+++|||.|.|..-|+++|+.+|
T Consensus 7 ~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s-----~~~~~k~f~Lqlle~vik~~W~~~~ 81 (1041)
T KOG2020|consen 7 KLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLS-----TNPILKYFALQLLENVIKFRWNSLP 81 (1041)
T ss_pred hHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhcc-----CCchhheeeHHHHHHHHHHhcccCC
Confidence 3455777777775555 888999999999999999999999999999875 3579999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHh
Q 002126 83 SAAKDALLNALLVAAKRFSS------GPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (962)
Q Consensus 83 ~e~~~~Lr~~Ll~~l~~~~~------~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~ 154 (962)
.+++.++|+.++..+..... ..+.+++||+..++.++++.+ .||+++.++...... ++..++..+.+++
T Consensus 82 ~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~---s~~~~el~m~Il~ 158 (1041)
T KOG2020|consen 82 VEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT---SETVCELSMIILL 158 (1041)
T ss_pred ccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc---CcccchHHHHHHH
Confidence 99999999999998876442 146899999999999999987 699999999999886 3566789999999
Q ss_pred hcccccccccccccCCCHHHHHHHHHH-HHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccc
Q 002126 155 VLPEEVIDSQASDCNISSAHRSQYGQE-LLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (962)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~-l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~ 233 (962)
.|.||+.+.+... ++ .+|..+.+. +......+..++..+..+.+. +-.......+.++-+||+++
T Consensus 159 lLsEdvf~~ss~~--~~-q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~-----~~~~atl~tl~~fl~wip~~------ 224 (1041)
T KOG2020|consen 159 LLSEEVFDFSSSE--LT-QQKIIILKNLLENEFQQIFTLCSYIKEKANS-----ELLSATLETLLRFLEWIPLG------ 224 (1041)
T ss_pred HHHHHHhcccchH--HH-hhhHHHHHHHhhHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhhcccHH------
Confidence 9999999776432 22 233333333 333456666666664443221 11122344555555666654
Q ss_pred chhhhhcchHHHHH-HhcCCCCcHHHHHHHHHHHHhcCCCh--------hHH------HHhhhhhhHHhhhhhhhccCcH
Q 002126 234 QGSLAAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHEGL--------PQA------LLCRVPFLKELLLLPALTDGDE 298 (962)
Q Consensus 234 ~~~~~~~~ll~~~~-~~L~~~~~~~~a~~~l~eil~~~~~~--------~~~------l~~~~~~l~~~~~~~~~~~~d~ 298 (962)
.+..+..+..++ ..+..++....|++|+.++++..... .+. .++...++.+.+. .....|.
T Consensus 225 --~I~~tn~l~~~l~~~ln~~~~r~~al~CL~ei~s~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~~~~--~~~~~dq 300 (1041)
T KOG2020|consen 225 --YIFETNILELLLNKFLNAPELRNNALSCLTELLSRKRSIYERKTVPMFNLTIYQLRSIPQDLDIPEVYS--SLSDEDQ 300 (1041)
T ss_pred --HHHHhhhHHHHHHhccchHHHHHHHHHHHHHHHhccccchhHHhHHHHHHHHHHHHHhhhhhchhhhhh--cccHhHH
Confidence 444444454444 55567888999999999999976421 111 1222223333332 2223344
Q ss_pred -hHHhhHHHHHHHHhHhhhHHHHhc----ChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcc----hhh-
Q 002126 299 -KVIGGLACLMSEIGQAAPSLIVEA----SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD----ASI- 368 (962)
Q Consensus 299 -d~~~~l~~l~~~~~e~~~~~l~~~----~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~----~~~- 368 (962)
...+.++.+++.+++.|..++... +.....+..+++..+-+| -++...++++|..+..+++..+ +..
T Consensus 301 ~~fi~~l~~~l~~f~~~~~~lle~~~~~~~~~~~~~~~li~i~~~~~---se~~~~~ld~W~~lv~~l~~~~~~ll~~s~ 377 (1041)
T KOG2020|consen 301 DSFIEKLAQFLSLFFEQHIALLESSLSQRPVLLEALLELILISTIEP---SEIFKICLDYWNKLVADLYYNKPPLLQLST 377 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchhhhhHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHHHhhhccccccccccc
Confidence 678999999999999999999762 223345555555555554 5677779999999887765420 000
Q ss_pred -------hhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCC--CCCCC-----CCCchHHHHHHHHHHHHHHHHHhcCcH
Q 002126 369 -------AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN--DDGMV-----DLPDGLVQFRMNLVELLVDICQLLRSA 434 (962)
Q Consensus 369 -------~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~--~~~~~-----d~~d~f~~fR~~~~d~l~~~~~il~~~ 434 (962)
..+-+-....|..++.++.-..+.+|.-|+..+- +++.. --..+|..+=..+.+.+...+.+-+..
T Consensus 378 ~~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~ 457 (1041)
T KOG2020|consen 378 TLPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVD 457 (1041)
T ss_pred ccccccchhccchHHHHHHHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhh
Confidence 0011123667888899999888999998877321 11100 001233333334444444444432221
Q ss_pred --HHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchh-HHHHHHHHhccCchhhhhhHHHHHHHHHHH
Q 002126 435 --TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS-VIMQLVAVLSASRSEELKGFMHIVYRSLAD 511 (962)
Q Consensus 435 --~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~-~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~ 511 (962)
.++...+..-+ .+..++|..+..-||+++++++.+.++.....+. .+.+++ ++......+. ..|+....+|+
T Consensus 458 t~~~~~~kl~~~l--~~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l-~l~E~~~~kd--n~avi~~Ni~~ 532 (1041)
T KOG2020|consen 458 TEKIMTEKLAIQL--DGDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLL-NLCERKRGKD--NKAVIASNIMY 532 (1041)
T ss_pred hhhhhhHhHHHHh--hHHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhhcCC--chhHHHHHHHH
Confidence 11111111111 1235679999999999998887665422111011 122222 2222111111 12466677899
Q ss_pred HHHhhHHHHHhChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccC--CCc-cHHHHHHHHHHHH--hcCCC
Q 002126 512 VIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALID--EPS-NLEILMWIGEALE--KRHLP 584 (962)
Q Consensus 512 ~ig~ys~wl~~~p~~L~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~--~p~-~~~~l~~~~~~l~--~~~l~ 584 (962)
++|.|..|++.|..+|+++...+++.++. ..++.+|+.+|.+|...|+.+++ .+. ..+....+...+. ...+.
T Consensus 533 vv~q~p~Fl~~h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l~ 612 (1041)
T KOG2020|consen 533 VVGQYPRFLKAHWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDLQ 612 (1041)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCch
Confidence 99999999999999999999999999884 55899999999999999998532 111 2223333333322 34567
Q ss_pred hhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhccccc
Q 002126 585 LEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLP 664 (962)
Q Consensus 585 ~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~ 664 (962)
...+...++++|.++.+-..+.....+...+..-.-..+.+++.++.....- ... .+-+.+....+.......+.++
T Consensus 613 ~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~-l~~--~~~v~s~~~i~~~~~~~~~sl~ 689 (1041)
T KOG2020|consen 613 PQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEI-LKL--LETVKSLLNILKTNSRALTSLG 689 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHh-hcc--hHHHHHHHHHHHhHHHHHHhcC
Confidence 7889999999997776644433345666666655556666655544321000 000 0111122222222233334344
Q ss_pred ccCCCCCCC-CchHHHHHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhh----hh----h--hHhhHHHHHHH
Q 002126 665 VPLPTNPAG-DDPIFALLRVFWPMLEKLFRS--EHMENGNLSTAACRALSLAIQSS----GQ----H--FVTLLPQVLDC 731 (962)
Q Consensus 665 ~~~~~~~~~-~~p~~~~~~~i~~~l~~i~~~--~~~~~~~v~e~~c~~~~~~~~~l----~~----~--~~p~l~~~~~~ 731 (962)
++.....+- ..-...++...-+.+...... ......+.+.....+-+.+..-+ +. + ...++|+.+..
T Consensus 690 ~~f~~~~~~~~~d~~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1041)
T KOG2020|consen 690 STFVPQLGKIYLDMLQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDA 769 (1041)
T ss_pred cccccccccccHHHHHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHH
Confidence 332111000 011222222222222222110 01122222222222222221111 11 1 12345666666
Q ss_pred HHHhhhhhcC---cchHHHHHHHHHHHhcCC-CCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHH
Q 002126 732 LSTNFVSFQN---HECYIRTASVVIEEFGHK-DEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVR 807 (962)
Q Consensus 732 l~~~f~~~~~---~~~~L~l~~~lv~~~g~~-~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~ 807 (962)
.+-.|....| .+..+.+-..++..+|+- ....+ ..+.++..++ +.++. .+..+.||+...|+.++..+..
T Consensus 770 ~~fd~~~nvPd~r~~~vl~l~~~iv~~Lg~~i~~~~~---~i~~~v~~c~-l~m~~--~d~qe~~e~~~~f~~lle~l~~ 843 (1041)
T KOG2020|consen 770 VLFDYLDNVPDYRENEVLSLNATIVPKLGEFIPAELP---LINIAVLECT-LEMIN--KDFQEYPEHRLNFLLLLEALLL 843 (1041)
T ss_pred HHHHHHccCcchhcchHHHhhhhhhhhhhhHhhhhcc---HHHHHHHhhh-hhccc--cccccchHHHHHHHHHHHHHHH
Confidence 6555543222 334566666666666652 11112 2222334444 33333 4778999999999999999999
Q ss_pred hhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHH
Q 002126 808 TSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVS 887 (962)
Q Consensus 808 ~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~ 887 (962)
.++..+..-+++.+..+.+.+.++..+..|.+.++++.-+..+....... ....+.+++.++..++.
T Consensus 844 ~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~-------------~~~~~~~~~~~~~~~l~ 910 (1041)
T KOG2020|consen 844 FCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEM-------------EKFANAFYQTYFLSLLQ 910 (1041)
T ss_pred hhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh-------------hHHHHHHHHHHHHHHHH
Confidence 99998887765667778888889998888999999998888887654321 13467788899999999
Q ss_pred HHHHHhcCCCcccchhhHHHHHHHHH
Q 002126 888 NVVYALLGVSAMSRVHKCATILQQLA 913 (962)
Q Consensus 888 ~ll~~~~g~~~rs~~~~~~~iL~~l~ 913 (962)
..+.-+.+..+.+.+...+-.+..+.
T Consensus 911 ~~~~~~~~~~~~~~f~~~~L~~~~l~ 936 (1041)
T KOG2020|consen 911 KIIAVLTDTDHKAGFTKQVLKLQFLF 936 (1041)
T ss_pred HHHHHHhccchhhcchHHHHHHHHHH
Confidence 99999998888899988888888777
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.5e-19 Score=198.29 Aligned_cols=596 Identities=14% Similarity=0.110 Sum_probs=377.9
Q ss_pred CCChHHHHHHHHHHHHhhcChH--HHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHh-----------cCCCCCChHH
Q 002126 19 DTESCNRVAANQWLVQFQQTDA--AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ-----------NEGYYLQSAA 85 (962)
Q Consensus 19 ~~d~~~~~~A~~~L~~~Q~s~~--aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~-----------~~~~~l~~e~ 85 (962)
+||+..++.|+++|.++|.+.- --....+.|..++ .+...|.-|+.+|++-+. .+|-+++.|.
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~----~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~ 87 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDN----SSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEI 87 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccC----CcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHH
Confidence 6888999999999999999843 3444556665544 357999999999999875 3599999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---hccCCchHHHHHHHhhcccCCCcchHHHHHHHhhccccccc
Q 002126 86 KDALLNALLVAAKRFSSGPPQLLTQICLALSALILR---AVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (962)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~---~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~ 162 (962)
++.+|+.++..|..-- +...+--+.++|.++.- ...||+++..+.......++. ......|+-+..+.|++.
T Consensus 88 reqVK~~il~tL~~~e---p~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~-~~k~~slealGyice~i~- 162 (859)
T KOG1241|consen 88 REQVKNNILRTLGSPE---PRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQAS-MVKESSLEALGYICEDID- 162 (859)
T ss_pred HHHHHHHHHHHcCCCC---CCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCC-
Confidence 9999999999886321 22223344445555533 336999999999998764322 334688999999999983
Q ss_pred ccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcch
Q 002126 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (962)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~l 242 (962)
++ .+...+..|+.-+.+..... + ++..++..+++|+-.=+.+... .+..+ ...+-+
T Consensus 163 --------pe--------vl~~~sN~iLtaIv~gmrk~---e---~s~~vRLaa~~aL~nsLef~~~-nF~~E-~ern~i 218 (859)
T KOG1241|consen 163 --------PE--------VLEQQSNDILTAIVQGMRKE---E---TSAAVRLAALNALYNSLEFTKA-NFNNE-MERNYI 218 (859)
T ss_pred --------HH--------HHHHHHhHHHHHHHhhcccc---C---CchhHHHHHHHHHHHHHHHHHH-hhccH-hhhcee
Confidence 11 34455666665554443322 1 3457899999999876665310 11111 123345
Q ss_pred HHHHHHhcCCC--CcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHH
Q 002126 243 LNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIV 320 (962)
Q Consensus 243 l~~~~~~L~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~ 320 (962)
+..+.++-+.+ ++.-+|..|++.|++.+-++. -+.+.
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m---~~yM~-------------------------------------- 257 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFM---EPYME-------------------------------------- 257 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHH---HHHHH--------------------------------------
Confidence 66666555544 445677777777665431110 01100
Q ss_pred hcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchh--hhh--hhh-hhhhhhHHHHHHHHHHHHHHhc
Q 002126 321 EASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS--IAK--NKK-HVEDMFFSVFSALLDALLLRAQ 395 (962)
Q Consensus 321 ~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~--~~~--~~~-~~~~~~~~~~~~L~~~l~~k~~ 395 (962)
..++..-+.-+.-+ +++|+-.++|||...+|+=.++.-+ ... .++ ......+.-+.-++.++++.+.
T Consensus 258 ------~alfaitl~amks~--~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~ 329 (859)
T KOG1241|consen 258 ------QALFAITLAAMKSD--NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT 329 (859)
T ss_pred ------HHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence 11222223333332 5789999999999888764332111 000 011 1122224445677888888887
Q ss_pred c-CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccC
Q 002126 396 V-DESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (962)
Q Consensus 396 ~-p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~ 474 (962)
. +++. ++|++.-. +..|-+|+-.....|++ ++.+++.=+.. .-.+++|+..||+.+++++|-++-.++
T Consensus 330 kqde~~--------d~DdWnp~-kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee-~i~~pdwr~reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 330 KQDEDD--------DDDDWNPA-KAAGVCLMLFAQCVGDD-IVPHVLPFIEE-NIQNPDWRNREAAVMAFGSILEGPEPD 398 (859)
T ss_pred hCCCCc--------ccccCcHH-HHHHHHHHHHHHHhccc-chhhhHHHHHH-hcCCcchhhhhHHHHHHHhhhcCCchh
Confidence 5 3332 22334332 33445566555566654 45554433322 124689999999999999997764432
Q ss_pred CCccchhHHHHHHHH---hccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---ChhchHHHHHHHHHhccc-CchhHHH
Q 002126 475 GQAFDFSVIMQLVAV---LSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGISE-AVSSNAC 547 (962)
Q Consensus 475 ~~~~~l~~i~~~l~~---l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~---~p~~L~~vL~~l~~~l~~-~~~~~~A 547 (962)
.. .|.+.+.++. +-..|.. .++.|+ -+++|+.++++.. |-.++.+.++.++.++++ |+++..+
T Consensus 399 ~L---t~iV~qalp~ii~lm~D~sl------~VkdTa-AwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~ 468 (859)
T KOG1241|consen 399 KL---TPIVIQALPSIINLMSDPSL------WVKDTA-AWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNV 468 (859)
T ss_pred hh---hHHHhhhhHHHHHHhcCchh------hhcchH-HHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHH
Confidence 21 2334443333 2234432 145555 4999999998864 567999999999999985 9999999
Q ss_pred HHHHHHHHHHhhcccCCC----ccHHHHHHHHHHHHh--cC---CChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 002126 548 ASALRKICEDASALIDEP----SNLEILMWIGEALEK--RH---LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSS 618 (962)
Q Consensus 548 a~al~~lc~~c~~~l~~p----~~~~~l~~~~~~l~~--~~---l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p 618 (962)
|.||..|.+.|..-...+ +..+.+..+...|.. .+ -...-|...|++++-+|...|.+ ....+..+..-
T Consensus 469 CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~--vy~~v~~~~l~ 546 (859)
T KOG1241|consen 469 CWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD--VYPMVQKLTLV 546 (859)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHH
Confidence 999999999997644322 223455555555432 12 23556888999999999888865 36778888888
Q ss_pred HHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhcc
Q 002126 619 SYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHME 698 (962)
Q Consensus 619 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~ 698 (962)
++.+|.+.++..... - ........|++.+ -..|..+.|-+.++ ...+-+.++..+.++++ . ++
T Consensus 547 il~kl~q~i~~~~l~--~-~dr~q~~eLQs~L--c~~Lq~i~rk~~~~----------~~~~~d~iM~lflri~~-s-~~ 609 (859)
T KOG1241|consen 547 ILEKLDQTISSQILS--L-ADRAQLNELQSLL--CNTLQSIIRKVGSD----------IREVSDQIMGLFLRIFE-S-KR 609 (859)
T ss_pred HHHHHHHHHHHHhcc--H-hhHHHHHHHHHHH--HHHHHHHHHHcccc----------chhHHHHHHHHHHHHHc-C-Cc
Confidence 899999988832110 1 1111222233322 23445566654431 22456778888888887 3 56
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhh
Q 002126 699 NGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF 736 (962)
Q Consensus 699 ~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f 736 (962)
+.-+-|.+.-.+...+..+|+.+..++|.+..++....
T Consensus 610 s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL 647 (859)
T KOG1241|consen 610 SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGL 647 (859)
T ss_pred cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Confidence 66777888888889999999999999999999888655
No 9
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.6e-14 Score=162.75 Aligned_cols=710 Identities=14% Similarity=0.120 Sum_probs=390.1
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCC-----
Q 002126 7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL----- 81 (962)
Q Consensus 7 ~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l----- 81 (962)
+.+.+++.+-- .+||..|+.|++-|.+++|+|.--..+.++...+.. +..||.-||.-|++||.+.|..-
T Consensus 4 ~~l~~~~~~T~-d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~----~l~vrqaaaIYlKN~I~~~W~~~~~~g~ 78 (1010)
T KOG1991|consen 4 QSLLQIFRATI-DSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGV----PLPVRQAAAIYLKNKITKSWSSHEAPGR 78 (1010)
T ss_pred HHHHHHHHHhc-CCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCC----chhHHHHHHHHHHHHHHhcCCccCCCCC
Confidence 35556655533 567899999999999999999998888998887654 57899999999999999999864
Q ss_pred ----ChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-c-cCCchHHHHHHHhhcccCCCcchHHHHHHHhh
Q 002126 82 ----QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (962)
Q Consensus 82 ----~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~ 155 (962)
+++++..+|+.++..+.+ +|..+|.++..++-.+...- + .||+.++.+-..+++. +.......|..|..
T Consensus 79 ~~~I~e~dk~~irenIl~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~--~~~~vy~aLl~l~q 153 (1010)
T KOG1991|consen 79 PFGIPEEDKAVIRENILETIVQ---VPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQ--DANHVYGALLCLYQ 153 (1010)
T ss_pred cCCCChHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCc--chhhHHHHHHHHHH
Confidence 689999999999999885 68999999999997777654 4 6999999999888874 23334455555554
Q ss_pred cccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccch
Q 002126 156 LPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (962)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~ 235 (962)
|.-- .+. -..++|.-+...+....|.+++.....+...+. ....+...++|-+.+-+.| ++|..
T Consensus 154 L~k~---ye~----k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~-----~s~el~klIlKifks~~~~----~LP~~ 217 (1010)
T KOG1991|consen 154 LFKT---YEW----KKDEERQPLGEAVEELFPDILQIFNGLLSQESY-----QSVELQKLILKIFKSLIYY----ELPLE 217 (1010)
T ss_pred HHHH---Hhh----ccccccccHHHHHHHHHHHHHHHHHhhccccch-----HHHHHHHHHHHHHHHHHHH----hCCHH
Confidence 4421 111 123455556666666789999888877765422 2346778899999999987 46665
Q ss_pred hhhhcchHHHHHHhcCCCCcHHHHHHHHHHHHhcCCC------------------hhHHHHhhhhhhHHhhhhhhhcc-C
Q 002126 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEG------------------LPQALLCRVPFLKELLLLPALTD-G 296 (962)
Q Consensus 236 ~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~------------------~~~~l~~~~~~l~~~~~~~~~~~-~ 296 (962)
.+ +++.|..-++.+..++++.-. -.+..+..+..+.++|....... +
T Consensus 218 L~--------------~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~ 283 (1010)
T KOG1991|consen 218 LS--------------APETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPE 283 (1010)
T ss_pred hh--------------CchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchh
Confidence 43 333344444444444443210 01222222222333332111111 1
Q ss_pred cHhHHhhHHHHH-HHHhHhhhHHHHhcChhHHHHHHHHHhcccCCCC-CchhhhhhHHHHHHHHHHHhhcchhhhhhhhh
Q 002126 297 DEKVIGGLACLM-SEIGQAAPSLIVEASPEALALADALLSCVAFPSE-DWEIADSTLQFWSTLASYILGLDASIAKNKKH 374 (962)
Q Consensus 297 d~d~~~~l~~l~-~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~-d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~ 374 (962)
..+..+-+++-| ..+-+.+.+.+ -+... .++ ...|-..++.|... ..+ ...
T Consensus 284 y~~Fa~~f~~n~~~~ile~~lk~l--------------~~~~~-~~yls~rvl~~~l~fl~~----~Vs--------~~~ 336 (1010)
T KOG1991|consen 284 YKEFAQMFLKNFAQGILEVFLKIL--------------EQWRQ-QLYLSDRVLYYLLNFLEQ----CVS--------HAS 336 (1010)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHh-cccCCHHHHHHHHHHHHH----hcc--------HHH
Confidence 112222111111 11111222211 11111 000 11222223333211 110 124
Q ss_pred hhhhhHHHHHHHHHHHH-HHhccCCCCCCCCCCCCCCchHHHH-----------HHHHHHHHHHHHHhcCcHH------H
Q 002126 375 VEDMFFSVFSALLDALL-LRAQVDESSFNDDGMVDLPDGLVQF-----------RMNLVELLVDICQLLRSAT------F 436 (962)
Q Consensus 375 ~~~~~~~~~~~L~~~l~-~k~~~p~~~~~~~~~~d~~d~f~~f-----------R~~~~d~l~~~~~il~~~~------~ 436 (962)
.+...+|++.-+++.++ .-|.|-+++. +.|+. |-+|+-+- |-...+++-.++.--|.+. +
T Consensus 337 twkll~PHl~~ii~~vIFPlmc~~d~de-elwe~-DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F 414 (1010)
T KOG1991|consen 337 TWKLLKPHLQVIIQDVIFPLMCFNDEDE-ELWEE-DPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSF 414 (1010)
T ss_pred HHHHhhhHHHHHHHHhhhhhcCCCcccH-HHHhc-CHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHH
Confidence 56677888877776554 4444422221 13422 12222111 1122345555554444331 2
Q ss_pred HHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHH-HHHH--hc--cCchhhhhhHHHHHHHHHHH
Q 002126 437 IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQ-LVAV--LS--ASRSEELKGFMHIVYRSLAD 511 (962)
Q Consensus 437 l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~-~l~~--l~--~~~~~~~~~~~~v~~~t~~~ 511 (962)
+.+++.+....+.+..+-+.-|.||+.++++++.+.+... +...++ ++.+ +| ..|. + .+|.++ |+
T Consensus 415 ~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~---~~~~mE~flv~hVfP~f~s~~----g--~Lrara-c~ 484 (1010)
T KOG1991|consen 415 IVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP---YKSQMEYFLVNHVFPEFQSPY----G--YLRARA-CW 484 (1010)
T ss_pred HHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc---hHHHHHHHHHHHhhHhhcCch----h--HHHHHH-HH
Confidence 2233333222222345688999999999999988775332 233343 2322 23 2332 2 267777 59
Q ss_pred HHHhhHHHHHhChhchHHHHHHHHHhccc-Cc--hhHHHHHHHHHHHHHhhcc---cCCCccHHHHHHHHHHHHhcCCCh
Q 002126 512 VIGSYSKWISAFQTNARPLLLFLAAGISE-AV--SSNACASALRKICEDASAL---IDEPSNLEILMWIGEALEKRHLPL 585 (962)
Q Consensus 512 ~ig~ys~wl~~~p~~L~~vL~~l~~~l~~-~~--~~~~Aa~al~~lc~~c~~~---l~~p~~~~~l~~~~~~l~~~~l~~ 585 (962)
+++.|++-==.+|..+..++....++|.+ ++ |+--||-|++.+...|... +. ++.+.+++-.-.+. .....
T Consensus 485 vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~--~hvp~~mq~lL~L~-ne~En 561 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS--AHVPPIMQELLKLS-NEVEN 561 (1010)
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh--hhhhHHHHHHHHHH-Hhcch
Confidence 99999962225788999999999999984 44 7899999999999999864 32 24433332211111 12355
Q ss_pred hhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccc
Q 002126 586 EDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPV 665 (962)
Q Consensus 586 ~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~ 665 (962)
++...+++.+- ...+ |+..++--.+++-+.+..-++++.....+.. +.. .++ .+...|+.+.+++..+..
T Consensus 562 d~Lt~vme~iV---~~fs--eElsPfA~eL~q~La~~F~k~l~~~~~~~~~-~dd---k~i-aA~GiL~Ti~Til~s~e~ 631 (1010)
T KOG1991|consen 562 DDLTNVMEKIV---CKFS--EELSPFAVELCQNLAETFLKVLQTSEDEDES-DDD---KAI-AASGILRTISTILLSLEN 631 (1010)
T ss_pred hHHHHHHHHHH---HHHH--HhhchhHHHHHHHHHHHHHHHHhccCCCCcc-chH---HHH-HHHHHHHHHHHHHHHHhc
Confidence 66666666543 2222 2245566677777777777777752211111 111 111 245566666666665542
Q ss_pred cCCCCCCCCch-HHH-HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcc
Q 002126 666 PLPTNPAGDDP-IFA-LLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHE 743 (962)
Q Consensus 666 ~~~~~~~~~~p-~~~-~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~ 743 (962)
|| ++. .-..+.|++..++.+ +-.++.|.+|.+... .+++-+++.|.+=.+.+.+.+.|... . .
T Consensus 632 ---------~p~vl~~le~~~l~vi~~iL~~---~i~dfyeE~~ei~~~-~t~~~~~Isp~mW~ll~li~e~~~~~-~-~ 696 (1010)
T KOG1991|consen 632 ---------HPEVLKQLEPIVLPVIGFILKN---DITDFYEELLEIVSS-LTFLSKEISPIMWGLLELILEVFQDD-G-I 696 (1010)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhh-hhhhhcccCHHHHHHHHHHHHHHhhh-h-H
Confidence 44 222 224566777777652 345788888887654 44444445554444555555555432 1 1
Q ss_pred hHHHHHHHHHH---HhcCCCCc-cchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchh
Q 002126 744 CYIRTASVVIE---EFGHKDEY-GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGA 819 (962)
Q Consensus 744 ~~L~l~~~lv~---~~g~~~~~-~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~ 819 (962)
.|..=..-.++ .+|...-. .+...+.+..++.. .+.+ ...+++|. +..+.++..++..|-+ .+. .
T Consensus 697 dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~----~l~~--e~~~D~d~-~~a~kLle~iiL~~kg-~~d---q 765 (1010)
T KOG1991|consen 697 DYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKK----VLTS--ENGEDSDC-ESACKLLEVIILNCKG-LLD---Q 765 (1010)
T ss_pred HHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHH----HHcC--CCCchHHH-HHHHHHHHHHHHHhcC-cHh---h
Confidence 22111112222 23443211 11111111112221 2333 12334443 3456777777777777 332 3
Q ss_pred chHHHHHHHHHhhcc
Q 002126 820 LLEVSFQKAAICCTA 834 (962)
Q Consensus 820 ~l~~~l~~~l~~l~~ 834 (962)
..+.++..++..++.
T Consensus 766 ~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 766 YIPLFLELALSRLTR 780 (1010)
T ss_pred HhHHHHHHHHHHHhc
Confidence 566677777777664
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.83 E-value=2.8e-14 Score=153.13 Aligned_cols=600 Identities=13% Similarity=0.100 Sum_probs=339.9
Q ss_pred CCChHHHHHHHHHHHHhhcChHH--HHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhc-----------CCCCCChHH
Q 002126 19 DTESCNRVAANQWLVQFQQTDAA--WEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQN-----------EGYYLQSAA 85 (962)
Q Consensus 19 ~~d~~~~~~A~~~L~~~Q~s~~a--W~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~-----------~~~~l~~e~ 85 (962)
+||+..|..|++.|.++|+..-. -.+..+.|...+ +..+.|.-|+.+|++-+.. +|-.++.|.
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~n----s~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~ 91 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLN----SNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHES 91 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccC----CcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHH
Confidence 67888999999999999987544 234445555443 4679999999999998753 599999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHhhhccCCchHHHHHHHhhcccCCCcchHHHHHHHhhcccccccc
Q 002126 86 KDALLNALLVAAKRFSSGPPQ--LLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDS 163 (962)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~~~~--v~~kL~~aLa~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~ 163 (962)
++.+|...+..|.. ..|++ ..-||--++|.+-+-...||++..+++...+..++ .....-.|.++....|-..
T Consensus 92 k~qvK~~al~aL~s--~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp-~~~k~~sl~~~gy~ces~~-- 166 (858)
T COG5215 92 KEQVKGMALRALKS--PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQP-VSGKCESLGICGYHCESEA-- 166 (858)
T ss_pred HHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCc-hHhHHHHHHHHHHHhhccC--
Confidence 99999999988864 22332 23344444444444444799999999998876431 2233445666666665431
Q ss_pred cccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcchH
Q 002126 164 QASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 (962)
Q Consensus 164 ~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll 243 (962)
+ +.+.+.+..++--+. +....++ ++..++..+|+|+-.=+-+-.. .+..+ ...+-++
T Consensus 167 -------P--------e~li~~sN~il~aiv---~ga~k~e---t~~avRLaaL~aL~dsl~fv~~-nf~~E-~erNy~m 223 (858)
T COG5215 167 -------P--------EDLIQMSNVILFAIV---MGALKNE---TTSAVRLAALKALMDSLMFVQG-NFCYE-EERNYFM 223 (858)
T ss_pred -------H--------HHHHHHhhHHHHHHH---HhhcccC---chHHHHHHHHHHHHHHHHHHHH-hhcch-hhhchhh
Confidence 1 123333333332222 2221122 4567899999998762222100 11111 1223344
Q ss_pred HHHHHhcCCC--CcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHh
Q 002126 244 NFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVE 321 (962)
Q Consensus 244 ~~~~~~L~~~--~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~ 321 (962)
+.+.++-+.+ ++.-+|.-|++.++..+-++.+.. + +
T Consensus 224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~y-----------------------------------------m-E 261 (858)
T COG5215 224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSY-----------------------------------------M-E 261 (858)
T ss_pred eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------H-H
Confidence 4444444322 334455555555443221111100 0 0
Q ss_pred cChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchh--hhhhhh-hhhhhhHHHHHHHHHHHHHHhcc-C
Q 002126 322 ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS--IAKNKK-HVEDMFFSVFSALLDALLLRAQV-D 397 (962)
Q Consensus 322 ~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~--~~~~~~-~~~~~~~~~~~~L~~~l~~k~~~-p 397 (962)
..+..+.-+.+..| +++|+..++|||...+++-.+.+-+ ..++.+ +.....+.-...++..+++-+.- .
T Consensus 262 -----~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ 334 (858)
T COG5215 262 -----NALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQG 334 (858)
T ss_pred -----HHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcC
Confidence 12333444555555 5789999999998887653221110 000000 01111122233445555544433 2
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCc
Q 002126 398 ESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA 477 (962)
Q Consensus 398 ~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~ 477 (962)
+|-..|+|. -. ...+-+|+--..+.| +.++..++.-... .-.+.+|...||+..+++++-++=.++.-
T Consensus 335 ed~~~DdWn--------~s-maA~sCLqlfaq~~g-d~i~~pVl~FvEq-ni~~~~w~nreaavmAfGSvm~gp~~~~l- 402 (858)
T COG5215 335 EDYYGDDWN--------PS-MAASSCLQLFAQLKG-DKIMRPVLGFVEQ-NIRSESWANREAAVMAFGSVMHGPCEDCL- 402 (858)
T ss_pred CCccccccc--------hh-hhHHHHHHHHHHHhh-hHhHHHHHHHHHH-hccCchhhhHHHHHHHhhhhhcCccHHHH-
Confidence 332122342 11 122233433333444 3455554433222 22467899999999999999765432221
Q ss_pred cchhHHHHHHHHhc---cCchhhhhhHHHHHHHHHHHHHHhhHHHHHh--Chh-chHHHHHHHHHhccc-CchhHHHHHH
Q 002126 478 FDFSVIMQLVAVLS---ASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQT-NARPLLLFLAAGISE-AVSSNACASA 550 (962)
Q Consensus 478 ~~l~~i~~~l~~l~---~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~--~p~-~L~~vL~~l~~~l~~-~~~~~~Aa~a 550 (962)
-+.+.+.++.+. +.+-. -+..||+ +.+|+.++++.. +|. +|++.+...+-|+.+ |.....++.+
T Consensus 403 --T~~V~qalp~i~n~m~D~~l------~vk~ttA-wc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~ 473 (858)
T COG5215 403 --TKIVPQALPGIENEMSDSCL------WVKSTTA-WCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWR 473 (858)
T ss_pred --HhhHHhhhHHHHHhccccee------ehhhHHH-HHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHH
Confidence 133444444433 33321 1456675 899999999886 564 889999999988875 8888888999
Q ss_pred HHHHHHHhhccc------CCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHH
Q 002126 551 LRKICEDASALI------DEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIG 624 (962)
Q Consensus 551 l~~lc~~c~~~l------~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~ 624 (962)
+.++...-.+.. ..++++.++..+...-....-+...|...++++|.+|.--|+. ..+.+-.+.+-...++.
T Consensus 474 ~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~--V~~~~a~~~~~~~~kl~ 551 (858)
T COG5215 474 KENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDA--VSDILAGFYDYTSKKLD 551 (858)
T ss_pred HHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHHHH
Confidence 998886544321 1122333333333321222234667899999999999887764 46777788888888888
Q ss_pred hhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHH
Q 002126 625 KLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLST 704 (962)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e 704 (962)
+.+.-..+.-...+... .+.|++ ..+..|.+++|...++. .| +-.+++.++-++++. . +..-+-+
T Consensus 552 ~~isv~~q~l~~eD~~~-~~elqS--N~~~vl~aiir~~~~~i-------e~---v~D~lm~Lf~r~les-~-~~t~~~~ 616 (858)
T COG5215 552 ECISVLGQILATEDQLL-VEELQS--NYIGVLEAIIRTRRRDI-------ED---VEDQLMELFIRILES-T-KPTTAFG 616 (858)
T ss_pred HHHHHhhhhhhhHHHHH-HHHHHH--HHHHHHHHHHHhcCCCc-------cc---HHHHHHHHHHHHHhc-c-CCchhhh
Confidence 87765422111111111 111221 23444556666544322 22 334567777888763 2 2333445
Q ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhh
Q 002126 705 AACRALSLAIQSSGQHFVTLLPQVLDCLSTNFV 737 (962)
Q Consensus 705 ~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~ 737 (962)
-+...+....+++++.+..+++.++.++....+
T Consensus 617 dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln 649 (858)
T COG5215 617 DVYTAISALSTSLEERFEQYASKFIPYLTRALN 649 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 677778888888888888888888888887654
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=5.1e-10 Score=126.26 Aligned_cols=718 Identities=13% Similarity=0.108 Sum_probs=362.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCC----
Q 002126 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY---- 80 (962)
Q Consensus 5 ~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~---- 80 (962)
..+++-+.+..=. .+||+.++-|++.|.+.+..+.-=-....|+..+. .+.++|.-||..+++.|+++|..
T Consensus 3 ~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~----~d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 3 NLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQ----QDPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred cHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhccC----cChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 4456666665522 57889999999999999877322223445554432 36799999999999999999975
Q ss_pred ---CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-c-cCCchHHHHHHHhhcccCCCcchHHHHHHHhh
Q 002126 81 ---LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTV 155 (962)
Q Consensus 81 ---l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~ 155 (962)
+.+++++.||.-++.... +.+..|..||..|++.++-+. + .||+.+++++..++++ +-......|..
T Consensus 78 ~~~i~~~~~e~ikslIv~lMl---~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~--D~~~~~gVL~t--- 149 (960)
T KOG1992|consen 78 PIKIIEEDREQIKSLIVTLML---SSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSG--DFNVINGVLVT--- 149 (960)
T ss_pred ccccchhHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcccc--chHHHHHHHHH---
Confidence 345678888888777655 356789999999999999764 4 6999999999999863 22222233222
Q ss_pred cccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccch
Q 002126 156 LPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (962)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~ 235 (962)
-..-+...|... -+++--.+++..|...+....+++.+..+...... .+ . ..++.|.+.-
T Consensus 150 ahsiFkr~R~ef--rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~---~~-----~--~~l~~lf~vl-------- 209 (960)
T KOG1992|consen 150 AHSIFKRYRPEF--RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHA---ND-----A--AALNILFGVL-------- 209 (960)
T ss_pred HHHHHHhcCccc--ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcc---cc-----h--hHHHHHHHHH--------
Confidence 111121111111 12333334444444444455555554433221100 00 0 1455555411
Q ss_pred hhhhcchHHHHHHhcCC---CCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHh------HHhhHHH
Q 002126 236 SLAAHPLLNFVFNSLQV---QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEK------VIGGLAC 306 (962)
Q Consensus 236 ~~~~~~ll~~~~~~L~~---~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d------~~~~l~~ 306 (962)
-++.-+|..|.. |+.||-=++. .++..+.+.. +.++.++.++++ .-..+|.
T Consensus 210 -----ll~~klfysLn~QDiPEFFEdnm~~--------------wM~~F~k~l~-~~~p~le~~~ee~~~l~~lka~ICE 269 (960)
T KOG1992|consen 210 -----LLICKLFYSLNFQDIPEFFEDNMKT--------------WMGAFHKLLT-YDNPLLESDEEEATVLDKLKAQICE 269 (960)
T ss_pred -----HHHHHHHHhhhcccchHHHHhhHHH--------------HHHHHHHHHh-ccCcccccCcccccHHHHHHHHHHH
Confidence 133444444432 2333321111 1111111110 111222222211 1225566
Q ss_pred HHHHHhHhhhHHHHhcChhH-HHHHHHHHhcccCCCCCch-hhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHH-
Q 002126 307 LMSEIGQAAPSLIVEASPEA-LALADALLSCVAFPSEDWE-IADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVF- 383 (962)
Q Consensus 307 l~~~~~e~~~~~l~~~~~~~-~~ll~~ll~~~~~p~~d~~-v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~- 383 (962)
+|+=....|-.-+..--+++ .....++...+..|. || .+.-++.|.....+ ...|..+|
T Consensus 270 i~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~k--yD~Lvs~Al~FLt~V~~----------------r~~y~~~F~ 331 (960)
T KOG1992|consen 270 IFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTK--YDYLVSKALQFLTSVSR----------------RPHYAELFE 331 (960)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHHHHHh----------------hhhhHhhhc
Confidence 55554444432221100122 234566666666663 44 34457777655433 12334343
Q ss_pred -HHHHHHHHHHhccCCCCCCC-CCCC--C----------CCchHHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHhhhc-
Q 002126 384 -SALLDALLLRAQVDESSFND-DGMV--D----------LPDGLVQFRMNLVELLVDICQLLRSA--TFIQKVFFGSWG- 446 (962)
Q Consensus 384 -~~L~~~l~~k~~~p~~~~~~-~~~~--d----------~~d~f~~fR~~~~d~l~~~~~il~~~--~~l~~~~~~l~~- 446 (962)
.+.+..+.+++..|.-.... |.+- | |..|-..-|+...|+++..+..-... .++..-.+.+..
T Consensus 332 ~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~ 411 (960)
T KOG1992|consen 332 GENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQ 411 (960)
T ss_pred chHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 46667777777776532110 0000 0 01122223455567777776654322 122222233222
Q ss_pred -CCCCCCCchhhhHHHHHHHhhhhc-------cccCCCccchhHHHH-----HHHHhccCchhhhhhHHHHHHHHHHHHH
Q 002126 447 -SANVPIPWKEVETKLFALNVVSEV-------VLQEGQAFDFSVIMQ-----LVAVLSASRSEELKGFMHIVYRSLADVI 513 (962)
Q Consensus 447 -~~~~~~~W~~~Ea~Lf~l~~iae~-------i~~~~~~~~l~~i~~-----~l~~l~~~~~~~~~~~~~v~~~t~~~~i 513 (962)
..+++.+|..-+.++|.+.++|-. +...++ +..+.. +++.|.+ | ....++-+++.++ .
T Consensus 412 y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~---lvdv~~Ff~~~ilp~L~s-~--~vn~~pilka~aI-K-- 482 (960)
T KOG1992|consen 412 YSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNE---LVDVVDFFANQILPDLLS-P--NVNEFPILKADAI-K-- 482 (960)
T ss_pred hccCCCccccccchhhhhhHHHHhhcchhhcceeeccc---cccHHHHHHHHhhHHhcc-C--ccccccchhhccc-c--
Confidence 235677899999999999998633 222222 222333 3333322 0 0011111333332 1
Q ss_pred HhhHHHHHh--ChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhc---ccCCCc-----cHHHHHHHHHHHHhc
Q 002126 514 GSYSKWISA--FQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASA---LIDEPS-----NLEILMWIGEALEKR 581 (962)
Q Consensus 514 g~ys~wl~~--~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~---~l~~p~-----~~~~l~~~~~~l~~~ 581 (962)
|.--|.+ .|++|-..++-+..++..+. |-.-||.++.++-.-|.. .+..+. ....+.++...+..+
T Consensus 483 --y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p 560 (960)
T KOG1992|consen 483 --YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP 560 (960)
T ss_pred --eeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC
Confidence 2222344 46788899999999998643 778899999888766654 332222 222333344333222
Q ss_pred CCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcc
Q 002126 582 HLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFS 661 (962)
Q Consensus 582 ~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~ 661 (962)
. ..+.+.++++|-++++..++.- . ....+++.++.+++.....+.+ +|.-. . -..+.++.+++
T Consensus 561 ~--~~EneylmKaImRii~i~~~~i--~----p~~~~~l~~Lteiv~~v~KNPs--~P~fn-H------YLFEsi~~li~ 623 (960)
T KOG1992|consen 561 G--KAENEYLMKAIMRIISILQSAI--I----PHAPELLRQLTEIVEEVSKNPS--NPQFN-H------YLFESIGLLIR 623 (960)
T ss_pred c--ccccHHHHHHHHHHHHhCHHhh--h----hhhhHHHHHHHHHHHHHhcCCC--CchhH-H------HHHHHHHHHHH
Confidence 2 2567899999999998876532 2 3344455555555554433211 22211 1 12444455554
Q ss_pred cccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh----hhHhhHHHHHHHHHHhhh
Q 002126 662 HLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ----HFVTLLPQVLDCLSTNFV 737 (962)
Q Consensus 662 ~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~----~~~p~l~~~~~~l~~~f~ 737 (962)
.... . .+..+...-..++|+++.++.. .-.+++--+..++...+...+. ++.|++|+++.- ..+.
T Consensus 624 ~t~~---~---~~~~vs~~e~aL~p~fq~Il~e---DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp--~lW~ 692 (960)
T KOG1992|consen 624 KTCK---A---NPSAVSSLEEALFPVFQTILSE---DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSP--NLWK 692 (960)
T ss_pred HHhc---c---CchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCH--HHHh
Confidence 3221 1 1122334457789999998863 1223333444444444443333 445555554432 2344
Q ss_pred hhcCcchHHHHHHHHHHHhcCCC----CccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHH
Q 002126 738 SFQNHECYIRTASVVIEEFGHKD----EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEV 813 (962)
Q Consensus 738 ~~~~~~~~L~l~~~lv~~~g~~~----~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~ 813 (962)
.+...+..+.++..++.. |... +..+.+... |+.+..+ +-.=+-.|.++.+++...|...
T Consensus 693 r~gNipalvrLl~aflk~-g~~~~~~~~~l~~iLGi---------fqkLiaS------ka~Dh~GF~LLn~i~~~~~~~~ 756 (960)
T KOG1992|consen 693 RSGNIPALVRLLQAFLKT-GSQIVEAADKLSGILGI---------FQKLIAS------KANDHHGFYLLNTIIESIPPNE 756 (960)
T ss_pred hcCCcHHHHHHHHHHHhc-CchhhcccccchhHHHH---------HHHHhcC------cccchhHHHHHHHHHhcCCHhh
Confidence 443466666666666643 2211 111222222 2222221 1112456788888888876654
Q ss_pred HhhchhchHHHHHHHHHhhccCc-hhHHHHHHHHHHHHH
Q 002126 814 LAASGALLEVSFQKAAICCTAMH-RGAALAAMSYLSCFL 851 (962)
Q Consensus 814 l~~~~~~l~~~l~~~l~~l~~~e-~~~~~a~~~fl~~li 851 (962)
+. +...+++...+.-++... ..=++...-|+..+.
T Consensus 757 ~~---py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ 792 (960)
T KOG1992|consen 757 LA---PYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFT 792 (960)
T ss_pred hh---HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 43 346666655555554332 222444455554433
No 12
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.63 E-value=2.1e-15 Score=146.28 Aligned_cols=146 Identities=27% Similarity=0.397 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhcccccccccccccCCCHHHHHHHHHH
Q 002126 104 PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQE 181 (962)
Q Consensus 104 ~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~ 181 (962)
|++|++|+|.+++.++.+.+ .||++++++++.+++ ++......|++|+.++||+.+..+. .+...||..+.+.
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~---~~~~~~~~L~iL~~l~eEi~~~~~~--~~~~~r~~~l~~~ 75 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS---SPQHLELVLRILRILPEEITDFRRS--SLSQERRRELKDA 75 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHTSHCC--HSHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc---chhHHHHHHHHHHHHHHHHHhhhch--hhhHHHHHHHHHH
Confidence 68999999999999999986 699999999999986 3566788999999999999863322 2678899999999
Q ss_pred HHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCCCcHHHHHH
Q 002126 182 LLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIE 261 (962)
Q Consensus 182 l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~ 261 (962)
+..+.+.|++++.+++....+. ....+...+|+|+.+|+. +++.+.+.++++++.+|+.|.+++++++|+|
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~----~~~~~~~~~L~~l~s~i~-----~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~ 146 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSE----ANEELVKAALKCLKSWIS-----WIPIELIINSNLLNLIFQLLQSPELREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHC----CHHHHHHHHHHHHHHHTT-----TS-HHHHHSSSHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc----cHHHHHHHHHHHHHHHHH-----hCCHHHhccHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999998875421 125788999999999999 7788888888999999999999999999999
Q ss_pred HH
Q 002126 262 VL 263 (962)
Q Consensus 262 ~l 263 (962)
||
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 97
No 13
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.5e-07 Score=102.25 Aligned_cols=804 Identities=13% Similarity=0.145 Sum_probs=407.3
Q ss_pred chHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCC
Q 002126 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (962)
Q Consensus 3 ~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~ 82 (962)
|+..++++..-..||.+.|+..|.+|++-|.+|-.||+.-+-|.-||...+. +..+..|+.+|-+-+. +-..||
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~-----pYs~mlAst~L~Klvs-~~t~lp 74 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSY-----PYSQMLASTCLMKLVS-RKTPLP 74 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-----chHHHHHHHHHHHHHc-CCCCCc
Confidence 4478899999999999999999999999999999999999999999987553 4778888888865555 445799
Q ss_pred hHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhc--------cCCchHHHHHHHhhcccCCCcchHHHHHHH
Q 002126 83 SAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAV--------EHGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (962)
Q Consensus 83 ~e~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~~~~~--------~W~~~i~~li~~~~~~~~~~~~~~~lL~iL 153 (962)
-+++..||+.+++++..-. .-+++|...||..+|.+...-| ...++|.++...++.. +.+.+.+.+.+|
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~--~ve~~~igv~iL 152 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMD--NVEHCIIGVQIL 152 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccC--chHHHHHHHHHH
Confidence 9999999999999998622 2346899999999999987754 1346777777777652 456778899999
Q ss_pred hhcccccccccccccCCCHHHHHHHHHHHHh-hhhHHHHHHHHhHhhccCCCCCcc-----hhhhHHHHHHHHH-HHHHh
Q 002126 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQ-----LHDRNRKILRCLL-SWVRA 226 (962)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~-----~~~~~~~~l~cl~-sWi~~ 226 (962)
+.|..|+...... .+..+++++...++. ..-+|+.+-.+.+....+-++.+. ...+...+++|+. -+|.-
T Consensus 153 sqLvqemN~~~~~---~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 153 SQLVQEMNQADGM---DPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred HHHHHHhhCCCCC---CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccc
Confidence 9999999754332 344555566666655 345666655554444321111001 1134455677765 23321
Q ss_pred c--------ccccccch---hhhhcchHHHHHHhcCC--CCcHHHHHHHHHHHHhcCC---------ChhHHHHhhhhhh
Q 002126 227 G--------CFTEISQG---SLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHE---------GLPQALLCRVPFL 284 (962)
Q Consensus 227 ~--------~~~~~~~~---~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~eil~~~~---------~~~~~l~~~~~~l 284 (962)
. |...||.+ .+..+..+++.|+.... +++.+.|.+|++.+-+-.+ .|.+.++..+..+
T Consensus 230 s~DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~i 309 (1082)
T KOG1410|consen 230 STDESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRI 309 (1082)
T ss_pred ccccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1 11123332 12346678888988874 5788999999987766332 2444455444332
Q ss_pred HHhhhhhhhccCcHhHHhhHHHHHHHHhHhhh-HHHHhcC--hhHHHH-HHHHHhcccCCCCCchhhhhhHHHHHHHHHH
Q 002126 285 KELLLLPALTDGDEKVIGGLACLMSEIGQAAP-SLIVEAS--PEALAL-ADALLSCVAFPSEDWEIADSTLQFWSTLASY 360 (962)
Q Consensus 285 ~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~-~~l~~~~--~~~~~l-l~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~ 360 (962)
.+ + .-.-.|.+.-+.+||++.-+--+|- .-++.-+ ++..++ -++-+.-..|=.--..-.-..+.+|.++...
T Consensus 310 l~---n-p~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaS 385 (1082)
T KOG1410|consen 310 LE---N-PQGLSDPANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVAS 385 (1082)
T ss_pred Hh---C-CcCCCCcchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhc
Confidence 21 1 1122355666778888766544441 1111111 222211 1111111111000011223577899987654
Q ss_pred HhhcchhhhhhhhhhhhhhHHHHHH-HHHHHHHHhc--cCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcH--H
Q 002126 361 ILGLDASIAKNKKHVEDMFFSVFSA-LLDALLLRAQ--VDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA--T 435 (962)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~~~~~-L~~~l~~k~~--~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~--~ 435 (962)
+--.... .+...+.|.|-..+ .+..=+...+ .+++ .++--|+-.-. .+.-|.+-.+|.--=.. .
T Consensus 386 VPyvk~~----~phlLd~y~PeIt~afi~SRl~sV~~ivrd~------~d~PLdd~~~~-~q~le~l~~icRceYEkTc~ 454 (1082)
T KOG1410|consen 386 VPYVKNT----EPHLLDTYCPEITKAFITSRLQSVEIIVRDG------LDDPLDDTGAV-QQQLEQLATICRCEYEKTCA 454 (1082)
T ss_pred CCcccCC----ChHHHhhhcHHHHHHHHHHHhhhhheecccC------CCCcchhhHHH-HHHHHHhhhhhhhhHhhHHH
Confidence 3111111 12233333332211 1111112222 1222 11112221111 11123333322210001 1
Q ss_pred HHHHHHHhh-------hc-CCCCCCCchhhhHH----HHHHHhhhhc-cc---cCCC-ccc---hhHHHHHHHH----hc
Q 002126 436 FIQKVFFGS-------WG-SANVPIPWKEVETK----LFALNVVSEV-VL---QEGQ-AFD---FSVIMQLVAV----LS 491 (962)
Q Consensus 436 ~l~~~~~~l-------~~-~~~~~~~W~~~Ea~----Lf~l~~iae~-i~---~~~~-~~~---l~~i~~~l~~----l~ 491 (962)
++.+.|+.. .. .+..+.+..-.|+- .|.++++..+ +. .++. ..+ ...+++++.. +|
T Consensus 455 llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~Std~~d~mDgEL~arvlql~nlmdsr~~ 534 (1082)
T KOG1410|consen 455 LLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATSTDEHDAMDGELSARVLQLVNLMDSRLP 534 (1082)
T ss_pred HHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceecccccchhhhhhhHHHHHHHHHHHhhhcccc
Confidence 344555442 11 11122333334443 3555554321 21 1111 000 1234444432 23
Q ss_pred cCchhhhhh-HH----HHH--------HHHHHHHHHhhHHHHH--hChhchHHHHHHHHHhcc----cCchhHHHHHHHH
Q 002126 492 ASRSEELKG-FM----HIV--------YRSLADVIGSYSKWIS--AFQTNARPLLLFLAAGIS----EAVSSNACASALR 552 (962)
Q Consensus 492 ~~~~~~~~~-~~----~v~--------~~t~~~~ig~ys~wl~--~~p~~L~~vL~~l~~~l~----~~~~~~~Aa~al~ 552 (962)
...+.+... +. ..| ..+ ..+-.+.++-+. .+...|..++..++..+. +..+.+..-.-|.
T Consensus 535 ~~~n~rle~ail~f~eqFRk~YvgDQ~~rs-SkvY~rl~e~Lgi~de~~~L~viv~KI~TNLK~w~~~e~vi~~tLslf~ 613 (1082)
T KOG1410|consen 535 LKGNERLELAILHFLEQFRKAYVGDQIQRS-SKVYARLSEVLGITDESDVLGVIVGKILTNLKYWGRNEPVISLTLSLFN 613 (1082)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHHHHHHHHhhcccccCCchHHHHHHHHHH
Confidence 222211100 00 000 001 123333333332 244567777777776664 2335555555555
Q ss_pred HHHHHhh--cccCCCccHHHHHH-HH-HHH----HhcC-CChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Q 002126 553 KICEDAS--ALIDEPSNLEILMW-IG-EAL----EKRH-LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAI 623 (962)
Q Consensus 553 ~lc~~c~--~~l~~p~~~~~l~~-~~-~~l----~~~~-l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l 623 (962)
.+...-. +.|+.-.....+++ .. +.+ .+.. -+...|...|++++.++-.--+++ ..-+++++.|+.+.+
T Consensus 614 dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~~d~sed--e~~fe~fm~PLt~~f 691 (1082)
T KOG1410|consen 614 DLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLMVDLSED--EDMFERFMLPLTDAF 691 (1082)
T ss_pred HHhhhHHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHhhccccc--HHHHHHHHHHHHHHH
Confidence 5554321 11111011111111 00 000 0111 134567889999999986533322 234789999999999
Q ss_pred HhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHH----HHHHHHHHHHHHhhhccc
Q 002126 624 GKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALL----RVFWPMLEKLFRSEHMEN 699 (962)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~----~~i~~~l~~i~~~~~~~~ 699 (962)
+.+++.-+++..+. +. +.+.+-.|..=+|++.-.. .......-.| -..+|++..-.+ +|.+.
T Consensus 692 e~v~~~~~nn~f~e--e~-------vK~~liGL~RDLRGiA~A~----~tktsy~~LFdWmYP~~mpllq~~Ve-~W~~~ 757 (1082)
T KOG1410|consen 692 EGVLQVFQNNCFEE--EQ-------VKRILIGLCRDLRGIAFAS----NTKTSYQMLFDWMYPEYMPLLQRAVE-KWYGC 757 (1082)
T ss_pred HHHHHHhccccccH--HH-------HHHHHHHHHHHhhhhhhhh----ccchHHHHHHHHhhhhHHHHHHHHHH-hcCCC
Confidence 98887654432221 11 1222333332233322111 1111122222 456778888777 79999
Q ss_pred hHHHHHHHHHHHHHHHh----hhhhh------------HhhHHHHHHHHHH--------hhh-hhcCc-chHHHHHHHHH
Q 002126 700 GNLSTAACRALSLAIQS----SGQHF------------VTLLPQVLDCLST--------NFV-SFQNH-ECYIRTASVVI 753 (962)
Q Consensus 700 ~~v~e~~c~~~~~~~~~----l~~~~------------~p~l~~~~~~l~~--------~f~-~~~~~-~~~L~l~~~lv 753 (962)
+++..-+.+++...+.. +..++ ..++...=+.+++ .|. +.... -||.-+-+.+.
T Consensus 758 p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~ 837 (1082)
T KOG1410|consen 758 PDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQLPEVSKDQIYAEKYKGISVCFSILKNALS 837 (1082)
T ss_pred CccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhcccCcchhhhHHHHhcCceehHHHHHHHhh
Confidence 98887766666555442 10000 0111111111110 000 00011 12222222333
Q ss_pred HHh---cCCCCcc-chHHHHHHHHhhhHHHHHhhc--CCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHH
Q 002126 754 EEF---GHKDEYG-PLFVTTFERFSQAASVRALNS--SYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQK 827 (962)
Q Consensus 754 ~~~---g~~~~~~-~~l~~l~~~l~~~~~~~~l~~--~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~ 827 (962)
..| |--.-|. ..+.+.+..+ +.++.+ -.++-+++.+.++||.|+..+.+.+-..+...+++.+-.++..
T Consensus 838 GnYv~FGVFrLYGD~~l~daL~~f-----vKm~lsIp~sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~S 912 (1082)
T KOG1410|consen 838 GNYVNFGVFRLYGDSALDDALQTF-----VKMLLSIPHSDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRS 912 (1082)
T ss_pred cCccccceeeeeCchHHHHHHHHH-----HHHHhcCCHHHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHH
Confidence 221 1100000 1233333322 222222 1255678999999999999999987666666555666667776
Q ss_pred HHHhhccCchhHHHHHHHHHHHHHhhh
Q 002126 828 AAICCTAMHRGAALAAMSYLSCFLEEC 854 (962)
Q Consensus 828 ~l~~l~~~e~~~~~a~~~fl~~li~~~ 854 (962)
.-.+++.-+.-+..++|.-+..+++.-
T Consensus 913 i~sGLt~lDt~v~ssccsslD~i~tYl 939 (1082)
T KOG1410|consen 913 ISSGLTSLDTIVSSSCCSSLDTIVTYL 939 (1082)
T ss_pred HHhccchhhHHHHhHHHHHHHHHHHHH
Confidence 667777777888888888777777654
No 14
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.48 E-value=3.2e-08 Score=113.26 Aligned_cols=511 Identities=14% Similarity=0.095 Sum_probs=253.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHH-HHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCC-----
Q 002126 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAW-EIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL----- 81 (962)
Q Consensus 8 ~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW-~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l----- 81 (962)
.+.+.+.... ++|+..|.+|+.-|.++-.+++-- .+|.-..+.. .+.+.|.+|+..|+.-|.++|...
T Consensus 5 ~ii~~L~~~l-s~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~-----~sl~lRQ~A~v~L~~yie~hW~~~~E~fr 78 (1005)
T KOG2274|consen 5 AIIELLSGSL-SADQNVRSQAETQLKQLELTEGFGVALAEVAANKD-----ASLPLRQIALVLLKRYIEKHWSPNFEAFR 78 (1005)
T ss_pred HHHHHHHhhc-CCChhHHHHHHHHHhccccchHHHHHHHHHHhCcc-----cCchHHHHHHHHHHHHHHHhCCChHhhcc
Confidence 4444444433 678899999999999999987632 2344344332 347899999999999999999865
Q ss_pred -----ChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-c-cCCchHHHHHHHhhcccCCCcchHHHHHHHh
Q 002126 82 -----QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (962)
Q Consensus 82 -----~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~-~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~ 154 (962)
+++.+.-||+.|++.+. ..++.+++-.+.+++.++--. | .||+.++-+..++++ ++.+.....+++|.
T Consensus 79 ~~~~~~e~~K~~IRe~Ll~~l~---~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~--~n~n~i~~am~vL~ 153 (1005)
T KOG2274|consen 79 YPLIVSEEVKALIREQLLNLLD---DSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS--GNENSIHGAMRVLA 153 (1005)
T ss_pred CCCcccHHHHHHHHHHHHhhhh---ccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc--cchhhhhhHHHHHH
Confidence 24567888888888776 456778888888888887544 3 588888888888886 24555666777777
Q ss_pred hcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccc
Q 002126 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (962)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~ 234 (962)
.+-.|+......- .+... ...+..++.+... .+...+..+.+
T Consensus 154 el~~ev~~ee~~~--~~~~~--------l~~m~~~f~~~~~------------~s~~~~~~aa~---------------- 195 (1005)
T KOG2274|consen 154 ELSDEVDVEEMFF--VGPVS--------LAEMYRIFALTIV------------YSIITRLGAAR---------------- 195 (1005)
T ss_pred HHHHHHHHHHHhc--ccccc--------hhhhhhhhhhccc------------cchhHHHHhhh----------------
Confidence 6666653110000 00000 0011112221110 00011111100
Q ss_pred hhhhhcchHHHHHHhcCC-CCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhH
Q 002126 235 GSLAAHPLLNFVFNSLQV-QSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (962)
Q Consensus 235 ~~~~~~~ll~~~~~~L~~-~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e 313 (962)
-+++..++..+.+ .+.....+.. +...+++..+....... +.-...|.-....+.+.++.+++
T Consensus 196 -----~~lf~sc~~li~~~~e~~~~~~~~----------~~s~~l~~~~~~l~h~l-~~~~g~~~~~~~eilk~~t~l~~ 259 (1005)
T KOG2274|consen 196 -----GKLFTSCLTLITNVEEVWAEHVKV----------FLSQILNQFMDILEHPL-QRNDGSDFSLRMEILKCLTQLVE 259 (1005)
T ss_pred -----hHHHHHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhh-cccccchHHHHHHHHHHHHHHHH
Confidence 0111111111110 0111111111 22222333333222111 01112233345567788888888
Q ss_pred hhhHHHHhcC----hhHHHHHHHHH-----hcccCCCCCchh-------h-------hhhHHHHHHHHHHHhhcchhhhh
Q 002126 314 AAPSLIVEAS----PEALALADALL-----SCVAFPSEDWEI-------A-------DSTLQFWSTLASYILGLDASIAK 370 (962)
Q Consensus 314 ~~~~~l~~~~----~~~~~ll~~ll-----~~~~~p~~d~~v-------~-------~~t~~FW~~l~e~l~~~~~~~~~ 370 (962)
+++.++..-- ......+.-++ .-..+.+.+++. . -..++|-..+..-....+ +.+
T Consensus 260 nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~--ti~ 337 (1005)
T KOG2274|consen 260 NFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSK--TIK 337 (1005)
T ss_pred hhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHH--Hhh
Confidence 8877764210 00011111111 111111111111 1 125555554433211000 000
Q ss_pred hhhhhh-hh-hHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHH--HHHHHHh-hh
Q 002126 371 NKKHVE-DM-FFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF--IQKVFFG-SW 445 (962)
Q Consensus 371 ~~~~~~-~~-~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~--l~~~~~~-l~ 445 (962)
.... -. ..-.|.++-..-+.--.-+...+- | +|.+. ..-|..+.|.+..+..-.|.+.. +.+..++ +.
T Consensus 338 --~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV--~--dEd~~-~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~ 410 (1005)
T KOG2274|consen 338 --KNLPELIYQLVAYLQLSEEQIEVWTSDVNQFV--A--DEDDG-YTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQ 410 (1005)
T ss_pred --hhhHHHHHHHHHHHHhhHHHHHHHhccHHHhh--c--cCCCC-chhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 0000 00 011122222222222221222221 1 11222 55677788888888887776531 2222111 11
Q ss_pred c-----CCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHH
Q 002126 446 G-----SANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWI 520 (962)
Q Consensus 446 ~-----~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl 520 (962)
. ..+++..|--.|+++++..++...... ++. +..+..++.....+.-. |.+..+. +.+++.|++=+
T Consensus 411 es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~-dd~--l~~l~~~~~~~l~~~e~-----P~Ll~Ra-~~~i~~fs~~~ 481 (1005)
T KOG2274|consen 411 ESQATYLFNNESWWKIQEALLVAAESVRIDDAN-DDK--LIELTIMIDNGLVYQES-----PFLLLRA-FLTISKFSSST 481 (1005)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhhcccCcch-HHH--HHHHHHHHHhhcccccC-----HHHHHHH-HHHHHHHHhhh
Confidence 1 123455699999999999988733221 111 23344444443222110 1123334 57888888766
Q ss_pred HhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhc
Q 002126 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (962)
Q Consensus 521 ~~~p~~L~~vL~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (962)
-.+|+.+...++..+.+++.......+.+|.+.+|.-|+.+...| ..|.++...-.+ .++-+.+...-++|+++.++.
T Consensus 482 ~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~-~~p~ild~L~ql-as~~s~evl~llmE~Ls~vv~ 559 (1005)
T KOG2274|consen 482 VINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS-LQPMILDGLLQL-ASKSSDEVLVLLMEALSSVVK 559 (1005)
T ss_pred ccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc-cchHHHHHHHHH-cccccHHHHHHHHHHHHHHhc
Confidence 678999999999999888854444455566666777776655432 444444433322 123355666777777777765
Q ss_pred cCC
Q 002126 601 SVS 603 (962)
Q Consensus 601 ~lp 603 (962)
--|
T Consensus 560 ~dp 562 (1005)
T KOG2274|consen 560 LDP 562 (1005)
T ss_pred cCh
Confidence 433
No 15
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=7.9e-06 Score=92.09 Aligned_cols=634 Identities=13% Similarity=0.048 Sum_probs=301.4
Q ss_pred CCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCC-----ChHHHHHHHHHH
Q 002126 19 DTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL-----QSAAKDALLNAL 93 (962)
Q Consensus 19 ~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l-----~~e~~~~Lr~~L 93 (962)
+.|+..|+.|+.-|.+++|.|.--..+..++..+.. +.++|.-||.-+++||.+.|+.. +++.+.+.|+.|
T Consensus 14 dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~----~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~l 89 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEG----DLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYL 89 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccC----CchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHH
Confidence 568889999999999999999999999999987753 57999999999999999999974 446677777777
Q ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHhhhc---cCCchHHHHHHHhhcccCCCcchHHHHHHHhhcccccccccccccC
Q 002126 94 LVAAKR-FSSGPPQLLTQICLALSALILRAV---EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCN 169 (962)
Q Consensus 94 l~~l~~-~~~~~~~v~~kL~~aLa~l~~~~~---~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~ 169 (962)
++-+.. +..+|...|+.+...+..++-... -|+ ..+.....+.++ ........|..+ +|+.+.-+.+
T Consensus 90 ienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~--ea~~vy~gLlcl----~elfkayRwk-- 160 (970)
T COG5656 90 IENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSS--EANHVYTGLLCL----EELFKAYRWK-- 160 (970)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhccc--chhHHHHHHHHH----HHHHHHHhhh--
Confidence 766654 335666677777766665554332 266 666666666552 222233334433 3443222222
Q ss_pred CCHHHHHHHHHHHHh-hhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcchHH---H
Q 002126 170 ISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLN---F 245 (962)
Q Consensus 170 l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~---~ 245 (962)
.. .++.....+.. -.|.+.++=..... ..+. ...++...+|+.+.+-.-+ .+|........+.+ +
T Consensus 161 ~n--deq~di~~li~alfpile~~g~nl~s-~~ny----~s~e~l~LILk~fKsvcy~----~LP~~lsa~e~f~sw~ql 229 (970)
T COG5656 161 YN--DEQVDILMLITALFPILEKVGGNLES-QGNY----GSVETLMLILKSFKSVCYY----SLPDFLSAIETFSSWFQL 229 (970)
T ss_pred cc--chHhhHHHHHHHhhHHHHHHhhcccc-CCch----hHHHHHHHHHHHHHHHHHh----hCCHHHccchhhHHHHHH
Confidence 22 22233333333 33444443322222 1111 1235667788888877765 34543322222222 2
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcCCC---hhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhc
Q 002126 246 VFNSLQVQSSFDVAIEVLVELVGRHEG---LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEA 322 (962)
Q Consensus 246 ~~~~L~~~~~~~~a~~~l~eil~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~ 322 (962)
.+..++.| +.+..+..=-| ++.... -.+.-+-.+..+.++|...............++..+..+.+.+.+.+..-
T Consensus 230 ~l~i~qkp-lp~evlsldpe-vRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~w 307 (970)
T COG5656 230 SLRILQKP-LPNEVLSLDPE-VRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEW 307 (970)
T ss_pred HHHHHcCC-CCHHHhccChh-hccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222221 00000000000 000000 11222222222222221101000011111222333333333333332211
Q ss_pred ChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCC
Q 002126 323 SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN 402 (962)
Q Consensus 323 ~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~ 402 (962)
. . | ..=.+.+.+-|...|.+.... ..+.+....|++.-++...+--+-.+.++..
T Consensus 308 g--------------q--g-qLWlsd~~LYfi~~Fve~cv~--------~d~tw~l~ePhlq~ii~~vIfPllc~see~e 362 (970)
T COG5656 308 G--------------Q--G-QLWLSDIELYFIDFFVELCVD--------ADQTWRLMEPHLQYIISGVIFPLLCLSEEEE 362 (970)
T ss_pred h--------------c--C-CeecchHHHHHHHHHHHHHhh--------hHhhHhhhccHHHHHHHhhhhhhcCCChhhH
Confidence 1 1 0 111333344444444433211 1234566777776666555433333333211
Q ss_pred CCCCCCCCchHHHHH---------HHHH--HHHHHHHHhcCcHHHHHHH----HHhhhcCCCCC---CCchhhhHHHHHH
Q 002126 403 DDGMVDLPDGLVQFR---------MNLV--ELLVDICQLLRSATFIQKV----FFGSWGSANVP---IPWKEVETKLFAL 464 (962)
Q Consensus 403 ~~~~~d~~d~f~~fR---------~~~~--d~l~~~~~il~~~~~l~~~----~~~l~~~~~~~---~~W~~~Ea~Lf~l 464 (962)
+.|+ +|.++|-+-. -|++ +++.-+ ..=+.+..++-+ .+.+..+..++ .+-++.|.+|+.+
T Consensus 363 ElfE-nDp~eyirry~df~d~g~spdlaal~fl~~~-~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~l 440 (970)
T COG5656 363 ELFE-NDPDEYIRRYYDFFDNGLSPDLAALFFLIIS-KSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLL 440 (970)
T ss_pred HHHh-cCHHHHHHHhcchhcCCCChhHHHHHHHHHH-hcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHH
Confidence 1232 1223332111 1222 111111 111222222222 22221111111 3477899999999
Q ss_pred HhhhhccccCCCccchhHHHH-HHHH--hccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccC
Q 002126 465 NVVSEVVLQEGQAFDFSVIMQ-LVAV--LSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA 541 (962)
Q Consensus 465 ~~iae~i~~~~~~~~l~~i~~-~l~~--l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~ 541 (962)
.+|..-+++ +++ +..+++ ++.. +|.... + .++ ++.++ |+++.+|++=++. +..+..+.+....++.+.
T Consensus 441 asi~s~itk-~sp--~an~me~fiv~hv~P~f~s-~-ygf--L~Sra-ce~is~~eeDfkd-~~ill~aye~t~ncl~nn 511 (970)
T COG5656 441 ASIKSFITK-MSP--AANVMEYFIVNHVIPAFRS-N-YGF--LKSRA-CEFISTIEEDFKD-NGILLEAYENTHNCLKNN 511 (970)
T ss_pred HHHHHHhcc-Cch--HHHHHHHHHHHHhhHhhcC-c-ccc--hHHHH-HHHHHHHHHhccc-chHHHHHHHHHHHHHhcC
Confidence 999885553 332 345555 2222 222111 1 122 45555 6999999764443 455666777777777763
Q ss_pred c--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Q 002126 542 V--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSS 619 (962)
Q Consensus 542 ~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~ 619 (962)
. |+-.||.|++-+..+-..+.....|.|..++-.-.+ +...+.+....++|++.. ..+ ++..+.-..|.+.+
T Consensus 512 ~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL-Sn~feiD~LS~vMe~fVe---~fs--eELspfa~eLa~~L 585 (970)
T COG5656 512 HLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL-SNTFEIDPLSMVMESFVE---YFS--EELSPFAPELAGSL 585 (970)
T ss_pred CcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh-cccccchHHHHHHHHHHH---HhH--HhhchhHHHHHHHH
Confidence 3 788899999988865443322112333332222121 123344455555554322 111 11223333344444
Q ss_pred HHHHHhhh----cccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 002126 620 YEAIGKLI----DGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSE 695 (962)
Q Consensus 620 ~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~ 695 (962)
.++.-++. .+.++..+ ... ..++ .+...+..+.+++-+++.. +......-+...|++.-++.+
T Consensus 586 v~qFlkiaq~l~ens~d~~s--~vD--DKqm-aasGiL~T~~smiLSlen~-------p~vLk~le~slypvi~Filkn- 652 (970)
T COG5656 586 VRQFLKIAQSLLENSSDTSS--VVD--DKQM-AASGILRTIESMILSLENR-------PLVLKYLEVSLYPVISFILKN- 652 (970)
T ss_pred HHHHHHHHHHHHcCCccccc--ccc--HHHH-HHHHHHHHHHHHHHhcccc-------hHHHHHHHHHHHHHHHHHHhh-
Confidence 44333333 32211111 111 1112 1344455555544434421 122233446788999988863
Q ss_pred hccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhh
Q 002126 696 HMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNF 736 (962)
Q Consensus 696 ~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f 736 (962)
.-.++...+|+++... +-.-..+.|..+.+.+.+....
T Consensus 653 --~i~dfy~Ea~dildg~-tf~skeI~pimwgi~Ell~~~l 690 (970)
T COG5656 653 --EISDFYQEALDILDGY-TFMSKEIEPIMWGIFELLLNLL 690 (970)
T ss_pred --hHHHHHHHHHHHHhhh-hHHHHHhhhhhhHHHHHHHhcc
Confidence 4456777788877643 3333455688888888877644
No 16
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.26 E-value=1.6e-09 Score=117.44 Aligned_cols=203 Identities=11% Similarity=0.138 Sum_probs=161.6
Q ss_pred hhHHHHHHHHHHhhhhhcC---cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHH
Q 002126 723 TLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYT 799 (962)
Q Consensus 723 p~l~~~~~~l~~~f~~~~~---~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f 799 (962)
.++|++++.++..|..+.| .+..|++.+.+|.+.|+ ...+.+..+++.+..+| +.++.. +..++||+...||
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~--~~~~~v~~I~~~vf~~T-l~MI~~--d~~~yPe~r~~ff 141 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGE--LIQPQVPQILEAVFECT-LPMINK--DFEEYPEHRVNFF 141 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGG--GCCCCHHHHHHHHHHHH-HHHHSS--TSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHH-HHHHHh--hhhhChHHHHHHH
Confidence 5789999999999986543 56689999999999997 34456777777777887 788865 7899999999999
Q ss_pred HHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHH
Q 002126 800 NFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVIS 879 (962)
Q Consensus 800 ~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (962)
.|+..+.++|+..++..|+..+..++++.++|++++++++...+++.+.++++..... ..+..+++++
T Consensus 142 ~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~------------~~~~~~~F~~ 209 (319)
T PF08767_consen 142 KLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT------------NPEFANQFYQ 209 (319)
T ss_dssp HHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-------------SHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc------------CHHHHHHHHH
Confidence 9999999999999998877889999999999999999999999999999999876541 1367889999
Q ss_pred hccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhcccchh----hccchhHHHHHHHHHHhh
Q 002126 880 HSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGK----AILSWESLQGWLHSAVSL 943 (962)
Q Consensus 880 ~~G~~Lv~~ll~~~~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~~----~~~~~~~~~~Wl~~~l~~ 943 (962)
++...++..++..+....+++.++..+.+|+.|..+.. .+.+..+ +........+|+.+.|.+
T Consensus 210 ~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve-~~~i~~~l~~~~~~n~~~v~~~i~~~L~~ 276 (319)
T PF08767_consen 210 QYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVE-SGSIQVPLFDPGMSNQEFVSEYIANLLSE 276 (319)
T ss_dssp HHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHH-TT-SSSSSSSTTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHH-cccccccccCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999994211 1111221 223334567777766664
No 17
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=0.0015 Score=74.88 Aligned_cols=114 Identities=21% Similarity=0.158 Sum_probs=96.7
Q ss_pred CCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCC-----CCChHHHHHHHHHH
Q 002126 19 DTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY-----YLQSAAKDALLNAL 93 (962)
Q Consensus 19 ~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~-----~l~~e~~~~Lr~~L 93 (962)
++|+..++.|++.|.+..+.|.-...-..+..+. +.+.++|..|+.-+|+-|.+.|. .+|+|++..||..|
T Consensus 11 s~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~----t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~iR~~L 86 (978)
T KOG1993|consen 11 SQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSK----TNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDFIRCNL 86 (978)
T ss_pred CCCcccchhHHHHHHhhccCCcHHHHHHHHHhcc----ccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHHHHHHH
Confidence 6788899999999999999999888777776543 35689999999999999998886 58999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh-hc-cCCchHHHHHHHhhcc
Q 002126 94 LVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQNL 139 (962)
Q Consensus 94 l~~l~~~~~~~~~v~~kL~~aLa~l~~~-~~-~W~~~i~~li~~~~~~ 139 (962)
+.++. +.+.-+..|.++.+|.+|-- ++ .||+.+++++..+++.
T Consensus 87 l~~~~---E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~ 131 (978)
T KOG1993|consen 87 LLHSD---EENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSS 131 (978)
T ss_pred HHhcc---cchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHh
Confidence 98875 45566888888888888844 44 7999999999999874
No 18
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.66 E-value=6e-08 Score=81.91 Aligned_cols=67 Identities=33% Similarity=0.375 Sum_probs=61.9
Q ss_pred HHHHHHHhhcC-hHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCC--------CCChHHHHHHHHHHHHHHH
Q 002126 28 ANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--------YLQSAAKDALLNALLVAAK 98 (962)
Q Consensus 28 A~~~L~~~Q~s-~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~--------~l~~e~~~~Lr~~Ll~~l~ 98 (962)
|+++|.+|+++ |+.|..+..++..++ .+.++|+||+.+|+++|+++|. .+|++++..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~----~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNS----QDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 999999999996643 4689999999999999999999 9999999999999999875
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00034 Score=83.86 Aligned_cols=372 Identities=14% Similarity=0.142 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHHHHhcCcH---HHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhc
Q 002126 415 QFRMNLVELLVDICQLLRSA---TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS 491 (962)
Q Consensus 415 ~fR~~~~d~l~~~~~il~~~---~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~ 491 (962)
.-|+.++|++-.+..-..++ ..+.-+++.. .+.+-+..|++++.++++.+.+....... ++.+..++.+--
T Consensus 95 ~vr~k~~dviAeia~~~l~e~WPell~~L~q~~-----~S~~~~~rE~al~il~s~~~~~~~~~~~~-~~~l~~lf~q~~ 168 (1075)
T KOG2171|consen 95 SVRHKLADVIAEIARNDLPEKWPELLQFLFQST-----KSPNPSLRESALLILSSLPETFGNTLQPH-LDDLLRLFSQTM 168 (1075)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHh-----cCCCcchhHHHHHHHHhhhhhhccccchh-HHHHHHHHHHhc
Confidence 67899999999998876654 2444444433 24556677999999999999998644422 456666666544
Q ss_pred cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCh-------hchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhccc
Q 002126 492 ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ-------TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALI 562 (962)
Q Consensus 492 ~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p-------~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l 562 (962)
..|... ||.++ .+.+|.|+.++..++ ..||.+++.+-..+..-+ ....+-.+|-.|.+.+.+.+
T Consensus 169 ~d~s~~------vr~~a-~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 169 TDPSSP------VRVAA-VRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred cCCcch------HHHHH-HHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 444322 45555 489999999986444 255666666655555433 35666777788888888877
Q ss_pred CCCccHHHHHHHHHH-HHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCC-----CCCC
Q 002126 563 DEPSNLEILMWIGEA-LEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNN-----HSLI 636 (962)
Q Consensus 563 ~~p~~~~~l~~~~~~-l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~-----~~~~ 636 (962)
.+ ++..+.++.-. ..+..++...|...+|-+...+...|.- .+....+..+++..+-..+..... +...
T Consensus 242 ~~--~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~---~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~ 316 (1075)
T KOG2171|consen 242 RP--HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAM---CKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDD 316 (1075)
T ss_pred HH--HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHH---hhhchhhhccHHHHHHHhcCCcccchhhccccc
Confidence 53 66666555433 3568899999999999999998875542 222333555555555554432211 1001
Q ss_pred CCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Q 002126 637 HNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQS 716 (962)
Q Consensus 637 ~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~ 716 (962)
.+..+....=..+.+.++|++..+ .+. . ++-.+++.+.+.+++ .+..-..++...+..+..-
T Consensus 317 ~ded~~~~~~~~A~~~lDrlA~~L---~g~--------~----v~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~EG 378 (1075)
T KOG2171|consen 317 LDEDDEETPYRAAEQALDRLALHL---GGK--------Q----VLPPLFEALEAMLQS---TEWKERHAALLALSVIAEG 378 (1075)
T ss_pred cccccccCcHHHHHHHHHHHHhcC---Chh--------h----ehHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcc
Confidence 111110001113567788887422 211 1 111224444444432 2333345666666666666
Q ss_pred hhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHH
Q 002126 717 SGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVE 796 (962)
Q Consensus 717 l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~ 796 (962)
+++.+.+.+|++++.++..++ +||+-+=|.++..+..+..+ +.+.+..-+.. .. ...+...-+-..+|-+-.
T Consensus 379 c~~~m~~~l~~Il~~Vl~~l~--DphprVr~AA~naigQ~std--l~p~iqk~~~e---~l-~~aL~~~ld~~~~~rV~a 450 (1075)
T KOG2171|consen 379 CSDVMIGNLPKILPIVLNGLN--DPHPRVRYAALNAIGQMSTD--LQPEIQKKHHE---RL-PPALIALLDSTQNVRVQA 450 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhh--hcHHHHHHHHH---hc-cHHHHHHhcccCchHHHH
Confidence 777788899999999888764 48888888888888888764 34445443321 11 111211112234444444
Q ss_pred HHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhc
Q 002126 797 AYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT 833 (962)
Q Consensus 797 ~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~ 833 (962)
..-.-+-.+...||...+. ++++.+++.-+..+.
T Consensus 451 hAa~al~nf~E~~~~~~l~---pYLd~lm~~~l~~L~ 484 (1075)
T KOG2171|consen 451 HAAAALVNFSEECDKSILE---PYLDGLMEKKLLLLL 484 (1075)
T ss_pred HHHHHHHHHHHhCcHHHHH---HHHHHHHHHHHHHHh
Confidence 4434444555677777774 578888885554443
No 20
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.13 Score=58.70 Aligned_cols=342 Identities=14% Similarity=0.116 Sum_probs=170.6
Q ss_pred HHHHHhhhhccccCCC-ccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-Chh---chHHHHHHHH
Q 002126 461 LFALNVVSEVVLQEGQ-AFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQT---NARPLLLFLA 535 (962)
Q Consensus 461 Lf~l~~iae~i~~~~~-~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~-~p~---~L~~vL~~l~ 535 (962)
+|-++..+..+..+.. ..-.|.+..++..+.+..+ + |.- + ..+.++.+-+. .++ ||..+|.-+.
T Consensus 455 CWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK-~------VQE-A---AcsAfAtleE~A~~eLVp~l~~IL~~l~ 523 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK-K------VQE-A---ACSAFATLEEEAGEELVPYLEYILDQLV 523 (885)
T ss_pred eeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH-H------HHH-H---HHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4445555555543222 1112444456666554433 1 222 2 22334444333 232 7777777777
Q ss_pred Hhccc---CchhHHHHHHHHHHHHHhhcccCCCccHHHHH----HHHHHHHhcCCChhhHHHHHHHHHHHhccC-----C
Q 002126 536 AGISE---AVSSNACASALRKICEDASALIDEPSNLEILM----WIGEALEKRHLPLEDEEEVVGAISLILGSV-----S 603 (962)
Q Consensus 536 ~~l~~---~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~----~~~~~l~~~~l~~~~~~~l~eai~~vi~~l-----p 603 (962)
.+++. ..+. ---.|+..+++.|+..|..|.++..|+ +-.+.+. -+..+.--++|.+++|.+++ |
T Consensus 524 ~af~kYQ~KNLl-ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ls---d~DKdLfPLLEClSsia~AL~~gF~P 599 (885)
T KOG2023|consen 524 FAFGKYQKKNLL-ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLS---DSDKDLFPLLECLSSIASALGVGFLP 599 (885)
T ss_pred HHHHHHhhccee-hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcC---cccchHHHHHHHHHHHHHHHhccccc
Confidence 77763 3322 236789999999999987666655443 3333221 13445667888888888774 3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcccCCC-CCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHH
Q 002126 604 NKELKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLR 682 (962)
Q Consensus 604 ~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~ 682 (962)
-.. +..++-+.-+-..++.......+. ....+. ++ .+-.++-++.+.+++.... +|.+ .-+
T Consensus 600 ~~~---~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdk-df------iI~sLDL~SGLaegLg~~i-------e~Lv-a~s 661 (885)
T KOG2023|consen 600 YAQ---PVYQRCFRILQKTLQLLAKVQQDPTVEAPDK-DF------IIVSLDLLSGLAEGLGSHI-------EPLV-AQS 661 (885)
T ss_pred cCH---HHHHHHHHHHHHHHHHHHhccCCccccCCCc-ce------EEEeHHHHhHHHHHhhhch-------HHHh-hhc
Confidence 322 122222222222222222222111 011111 11 1223444444444444321 2221 113
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcch---HHHHHHHHHHHhcCC
Q 002126 683 VFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHEC---YIRTASVVIEEFGHK 759 (962)
Q Consensus 683 ~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~---~L~l~~~lv~~~g~~ 759 (962)
.+..++...+. -.-++|.+.+..+++...+.+-+++.|.+..++..+...+... ..+. ..|.++-+..++|..
T Consensus 662 nl~~lll~C~~---D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~-~isv~nNA~WAiGeia~k~g~~ 737 (885)
T KOG2023|consen 662 NLLDLLLQCLQ---DEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE-NISVCNNAIWAIGEIALKMGLK 737 (885)
T ss_pred cHHHHHHHHhc---cCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh-hchHHHHHHHHHHHHHHHhchh
Confidence 34555555443 2457899999889988888777777777766666666554432 2222 366777777777764
Q ss_pred CCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhh-ccCchh
Q 002126 760 DEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC-TAMHRG 838 (962)
Q Consensus 760 ~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l-~~~e~~ 838 (962)
..+.+..++..+... ++. ....-.+.++.=--++|+-..||..+.+. ++.+.+-....+ ...+.+
T Consensus 738 --~~~~v~~vl~~L~~i-----in~---~~~~~tllENtAITIGrLg~~~Pe~vAp~----l~~f~~pWc~sl~~i~Dne 803 (885)
T KOG2023|consen 738 --MKQYVSPVLEDLITI-----INR---QNTPKTLLENTAITIGRLGYICPEEVAPH----LDSFMRPWCTSLRNIDDNE 803 (885)
T ss_pred --hhhHHHHHHHHHHHH-----hcc---cCchHHHHHhhhhhhhhhhccCHHhcchh----HHHHHHHHHHHhcccccch
Confidence 234444443332221 111 12223455555555778888888877643 444444322233 245566
Q ss_pred HHHHHHHHHHHHHhh
Q 002126 839 AALAAMSYLSCFLEE 853 (962)
Q Consensus 839 ~~~a~~~fl~~li~~ 853 (962)
-..+|+.=+.++|..
T Consensus 804 EK~sAFrG~c~mi~v 818 (885)
T KOG2023|consen 804 EKESAFRGLCNMINV 818 (885)
T ss_pred hHHHHHHHHHHheee
Confidence 666666655555544
No 21
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=1.3 Score=55.79 Aligned_cols=175 Identities=13% Similarity=0.128 Sum_probs=99.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCc------HHHHHHHHHhhhcC
Q 002126 374 HVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRS------ATFIQKVFFGSWGS 447 (962)
Q Consensus 374 ~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~------~~~l~~~~~~l~~~ 447 (962)
+..+...|++.+|+..+. +.+|+|+ ..+.+-+.+++..+-. +.+++.+++.+...
T Consensus 987 ~a~~kl~p~l~kLIPrLy-RY~yDP~------------------~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen 987 QAGEKLEPYLKKLIPRLY-RYQYDPD------------------KKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVN 1047 (1702)
T ss_pred HHHHhhhhHHHHhhHHHh-hhccCCc------------------HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 345677888888888774 4677665 2355667777776432 24777788776542
Q ss_pred CCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccC--chhhhhhHHHHHHHHHHHHHHhhHHHH--HhC
Q 002126 448 ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSAS--RSEELKGFMHIVYRSLADVIGSYSKWI--SAF 523 (962)
Q Consensus 448 ~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~--~~~~~~~~~~v~~~t~~~~ig~ys~wl--~~~ 523 (962)
..+..|+-.||++.++.-+-.+=+.++-...+|.+...+-..-++ ...|..+- -..+++..++.+.++=. ...
T Consensus 1048 -lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~--~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1048 -LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAAD--KAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred -ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcccCCcccH
Confidence 245679999999999987754422211100133333222111111 12222111 01112223333333310 112
Q ss_pred hhchHHHHHHHH-Hhccc--CchhHHHHHHHHHHHHHhhcccCCCccHHHHH
Q 002126 524 QTNARPLLLFLA-AGISE--AVSSNACASALRKICEDASALIDEPSNLEILM 572 (962)
Q Consensus 524 p~~L~~vL~~l~-~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~ 572 (962)
.+.+..+|+|++ +|+.+ +++++.+-.++.++.+..++.+. | +.+-|.
T Consensus 1125 ~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk-P-~~~~LI 1174 (1702)
T KOG0915|consen 1125 KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK-P-HFPKLI 1174 (1702)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc-c-hhhHHH
Confidence 368889999998 34443 55899999999999999888775 3 554443
No 22
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.52 E-value=0.29 Score=54.41 Aligned_cols=200 Identities=15% Similarity=0.215 Sum_probs=101.3
Q ss_pred HHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhh--HHHHHHHHH-HHHHHhccCCCC---C
Q 002126 328 ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMF--FSVFSALLD-ALLLRAQVDESS---F 401 (962)
Q Consensus 328 ~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~--~~~~~~L~~-~l~~k~~~p~~~---~ 401 (962)
...++|......+.. +.+...++.|-....+.. .....| ++.+.++++ +++..|.+-+++ |
T Consensus 141 ~vw~lL~~~~~~~~~-D~lv~~al~FL~~v~~~~------------~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~Elf 207 (370)
T PF08506_consen 141 AVWNLLTKISQQPKY-DILVSKALQFLSSVAESP------------HHKNLFENKPHLQQIIEKVIFPNLCLREEDEELF 207 (370)
T ss_dssp HHHHHHTC--SSGGG-HHHHHHHHHHHHHHHTSH------------HHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHH
T ss_pred HHHHHHHHhhhcccc-cHHHHHHHHHHHHHHcch------------hHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 456666665555532 235566788765443321 111233 677777776 446677764331 2
Q ss_pred CCCC------CCCCCchHHHHHHHHHHHHHHHHHhcCcH--H----HHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhh
Q 002126 402 NDDG------MVDLPDGLVQFRMNLVELLVDICQLLRSA--T----FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSE 469 (962)
Q Consensus 402 ~~~~------~~d~~d~f~~fR~~~~d~l~~~~~il~~~--~----~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae 469 (962)
.++. + -|..|+..-|+...|+++..+.--+.. . +++.++.+..+ +++.+|..-++++|.+++++.
T Consensus 208 EddP~EYIrrd-~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~--~~~~~w~~KD~Al~Li~ala~ 284 (370)
T PF08506_consen 208 EDDPEEYIRRD-LEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYAS--NPSNNWRSKDGALYLIGALAS 284 (370)
T ss_dssp HHSHHHHHHHH-SCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT-HHHHHHHHHHHHHHHB
T ss_pred ccCHHHHHHhh-ccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh--CCcccHHHHHHHHHHHHHHHh
Confidence 1100 0 122456677778889998887654332 1 22223332222 245689999999999999975
Q ss_pred cccc--CC--CccchhHHHHHHH-----Hhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcc
Q 002126 470 VVLQ--EG--QAFDFSVIMQLVA-----VLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGIS 539 (962)
Q Consensus 470 ~i~~--~~--~~~~l~~i~~~l~-----~l~-~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~ 539 (962)
.... .+ +...+..+.+++. .|. +... .+-++..+ +..+..+-.-+ .++.+..+++.+...|.
T Consensus 285 k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~-----~piLka~a-ik~~~~Fr~~l--~~~~l~~~~~~l~~~L~ 356 (370)
T PF08506_consen 285 KGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNS-----HPILKADA-IKFLYTFRNQL--PKEQLLQIFPLLVNHLQ 356 (370)
T ss_dssp SS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S------HHHHHHH-HHHHHHHGGGS---HHHHHHHHHHHHHHTT
T ss_pred hhccccCCcccccccccHHHHHHHHhHHHhcccCCC-----CcchHHHH-HHHHHHHHhhC--CHHHHHHHHHHHHHHhC
Confidence 4421 00 0001122333332 232 1111 12244434 46666655432 46789999999999999
Q ss_pred cCc--hhHHHHHHH
Q 002126 540 EAV--SSNACASAL 551 (962)
Q Consensus 540 ~~~--~~~~Aa~al 551 (962)
+++ |..-||.|+
T Consensus 357 ~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 357 SSSYVVHTYAAIAI 370 (370)
T ss_dssp SS-HHHHHHHHHHH
T ss_pred CCCcchhhhhhhhC
Confidence 876 567777664
No 23
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.41 E-value=0.041 Score=64.89 Aligned_cols=125 Identities=16% Similarity=0.093 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCC----
Q 002126 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY---- 80 (962)
Q Consensus 5 ~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~---- 80 (962)
..+.|.++-.+ .+++|..++.|++-|++..+.++ ++..|+.-... .+.+...|.-|+.-+++-|.++|.+
T Consensus 3 ~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~g---F~~kL~~I~~~-~~~~m~lR~~a~i~fkn~I~~~W~~~~~~ 76 (947)
T COG5657 3 DLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHG---FALKLLSINLS-AFNSMSLRWAALIQFKNYIDKHWREENGN 76 (947)
T ss_pred chHHHHHHHhh--cCCCCchHhhHHHHHHhhhcccc---HHHHHHHHHhc-cccchhHHHHHHHHHHhhHHHHhhhhccc
Confidence 45555554333 25677789999999999999887 44444433211 1356899999999999999999986
Q ss_pred -CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-hc-cCCchHHHHHHHhhc
Q 002126 81 -LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILR-AV-EHGKPIEKLFYSLQN 138 (962)
Q Consensus 81 -l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~-~~-~W~~~i~~li~~~~~ 138 (962)
+.+++...+|..++..+.+. +....-|.+.|++.+|-- ++ .||+.++|++..+++
T Consensus 77 ~i~p~e~v~IR~~l~~lii~s---~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~ 134 (947)
T COG5657 77 SILPDENVLIRDELFSLIISS---SNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSE 134 (947)
T ss_pred CCCCccchHHHHHHHHHHHcc---cchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcc
Confidence 44555569999999988753 233333778888888854 44 699999999999986
No 24
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.34 E-value=2.6 Score=47.63 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=49.2
Q ss_pred hhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHH--
Q 002126 480 FSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKIC-- 555 (962)
Q Consensus 480 l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc-- 555 (962)
+|.+.+++...-..+... ...++.-.++|+.+..+.. ....+.+++.|+=..++.++ -+.+|..||-++.
T Consensus 323 lP~lL~LL~~q~ed~~~D-dWn~smaA~sCLqlfaq~~-----gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 323 LPELLSLLEKQGEDYYGD-DWNPSMAASSCLQLFAQLK-----GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HHHHHHHHHhcCCCcccc-ccchhhhHHHHHHHHHHHh-----hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 355666666543333211 1112222334444444322 33467789999999998876 5688899998884
Q ss_pred --HHhhcccCCCccHHHHHH
Q 002126 556 --EDASALIDEPSNLEILMW 573 (962)
Q Consensus 556 --~~c~~~l~~p~~~~~l~~ 573 (962)
++|...++ |+.+|.+..
T Consensus 397 p~~~~lT~~V-~qalp~i~n 415 (858)
T COG5215 397 PCEDCLTKIV-PQALPGIEN 415 (858)
T ss_pred ccHHHHHhhH-HhhhHHHHH
Confidence 55665554 345554443
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=2.4 Score=47.99 Aligned_cols=277 Identities=12% Similarity=0.080 Sum_probs=148.1
Q ss_pred hchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh----------------------
Q 002126 525 TNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK---------------------- 580 (962)
Q Consensus 525 ~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~---------------------- 580 (962)
.|+..+++=++.++++++ ++-.||.++.++|.-|+..... ++-.++..+......
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~-~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV-YFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc-chHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccc
Confidence 389999999999999876 7899999999999999987642 232232222211000
Q ss_pred ------------------cCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhh
Q 002126 581 ------------------RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATY 642 (962)
Q Consensus 581 ------------------~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~ 642 (962)
+..++..|..+++=+- ++...|+-+ +-.|+..+++.++.-+.. . .++..
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~-~Lds~P~~~-m~~yl~~~ldGLf~~LsD----~-------s~eVr 225 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLY-VLDSVPDLE-MISYLPSLLDGLFNMLSD----S-------SDEVR 225 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHhcCCcHH-HHhcchHHHHHHHHHhcC----C-------cHHHH
Confidence 1123444555554433 344556544 456666666555554421 1 11110
Q ss_pred HHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhH
Q 002126 643 TQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFV 722 (962)
Q Consensus 643 ~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~ 722 (962)
.. +-.+++.++++..+.. .+-+ +..+.+++-.-+ ..+++++-..+...+...+...|.+..
T Consensus 226 -----~~--~~t~l~~fL~eI~s~P-~s~d--------~~~~i~vlv~~l---~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 226 -----TL--TDTLLSEFLAEIRSSP-SSMD--------YDDMINVLVPHL---QSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred -----HH--HHHHHHHHHHHHhcCc-cccC--------cccchhhccccc---cCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 00 1112333333333211 0000 111233332222 235667777888888888888888999
Q ss_pred hhHHHHHHHHHHhhhhhcCcchH-----HH-HHHHHH-HHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchH
Q 002126 723 TLLPQVLDCLSTNFVSFQNHECY-----IR-TASVVI-EEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLV 795 (962)
Q Consensus 723 p~l~~~~~~l~~~f~~~~~~~~~-----L~-l~~~lv-~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~ 795 (962)
++++.++..++.+...+++.+.. +. .+..++ ...+.. + . .+..+++.+. ..+. .+.-|..
T Consensus 287 ~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~-~-i-d~~~ii~vl~-----~~l~-----~~~~~tr 353 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKE-E-I-DYGSIIEVLT-----KYLS-----DDREETR 353 (675)
T ss_pred hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcc-c-c-chHHHHHHHH-----HHhh-----cchHHHH
Confidence 99988888877655544333221 11 122222 222221 1 0 0111111111 1111 4566778
Q ss_pred HHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHH
Q 002126 796 EAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFL 851 (962)
Q Consensus 796 ~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li 851 (962)
-..++.+..+..+.|+-++.. ...+|...+.++.-+.-+.+--++..+..+.
T Consensus 354 i~~L~Wi~~l~~~~p~ql~~h----~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 354 IAVLNWIILLYHKAPGQLLVH----NDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred HHHHHHHHHHHhhCcchhhhh----ccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 888899999999999887753 3455666666666665555555555554444
No 26
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.77 E-value=5.4 Score=45.56 Aligned_cols=181 Identities=9% Similarity=0.123 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchHHH----HHHHHHHHHHHHhhhh---hhH-hhHHHHHHHHHHhhhhhcCcchHHHH
Q 002126 677 IFALLRVFWPMLEKLFRSEHMENGNLS----TAACRALSLAIQSSGQ---HFV-TLLPQVLDCLSTNFVSFQNHECYIRT 748 (962)
Q Consensus 677 ~~~~~~~i~~~l~~i~~~~~~~~~~v~----e~~c~~~~~~~~~l~~---~~~-p~l~~~~~~l~~~f~~~~~~~~~L~l 748 (962)
...+++++..++..+.. -++++... |.++.++|..-..-.. .+. .++|++...+.++.. .-.++.+.+
T Consensus 65 ~~~il~~L~~il~~v~k--NPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~--EF~PYvfQI 140 (435)
T PF03378_consen 65 AVEILQHLTAILKEVSK--NPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ--EFIPYVFQI 140 (435)
T ss_dssp HHHHHHHHHHHHHHHHT--S---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T--TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 45677888888888874 46666665 5666666553321111 222 344555444444332 146677889
Q ss_pred HHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHH
Q 002126 749 ASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKA 828 (962)
Q Consensus 749 ~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~ 828 (962)
++.+++...+. ...+...+++..+.... .-+.+.-+-...+|+..++++.|..+... +.++.++...
T Consensus 141 la~Lle~~~~~-~~p~~y~~L~~~Ll~p~----------lWe~~gniPalvrLL~a~i~k~~~~i~~~--~~l~~iLgvF 207 (435)
T PF03378_consen 141 LAQLLELRPSS-PLPDAYKQLFPPLLSPA----------LWERRGNIPALVRLLQAYIKKDPSFIVAN--NQLEPILGVF 207 (435)
T ss_dssp HHHHHHHSS---S--TTTGGGHHHHTSGG----------GGGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHHHHH
T ss_pred HHHHHHcCCCC-CCcHHHHHHHHHHcCcc----------hhccCCCcCcHHHHHHHHHHhCchhhcch--hhHHHHHHHH
Confidence 99999877621 22222333333332222 23456677889999999999999998654 4567665544
Q ss_pred HHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcC
Q 002126 829 AICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLG 895 (962)
Q Consensus 829 l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g 895 (962)
-..+...-.+ ..++.++..++..... +.+.++-++++..++..+.+
T Consensus 208 QkLi~sk~~D--~~gF~LL~~iv~~~p~-------------------~~l~~yl~~I~~lll~RLq~ 253 (435)
T PF03378_consen 208 QKLIASKAND--HYGFDLLESIVENLPP-------------------EALEPYLKQIFTLLLTRLQS 253 (435)
T ss_dssp HHHHT-TTCH--HHHHHHHHHHHHHS-H-------------------HHHGGGHHHHHHHHHHHHHH
T ss_pred HHHHCCCCcc--hHHHHHHHHHHHHCCH-------------------HHHHHHHHHHHHHHHHHHhh
Confidence 4444433222 3366777777755321 23444555666666666653
No 27
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.47 E-value=15 Score=44.42 Aligned_cols=682 Identities=12% Similarity=0.108 Sum_probs=300.4
Q ss_pred CcchhHHHHHhHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCchHHHHHHHh
Q 002126 57 LTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSL 136 (962)
Q Consensus 57 ~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~~W~~~i~~li~~~ 136 (962)
+.|-..||.|..=|-+.++++--.|..|.-.-+-.-|++.|.. .+.-|.+--..+++-++-+.. ++-+..+++.+
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D---~ngEVQnlAVKClg~lvsKvk--e~~le~~ve~L 90 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED---KNGEVQNLAVKCLGPLVSKVK--EDQLETIVENL 90 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHhhch--HHHHHHHHHHH
Confidence 3456899999999999999998888877766666667766653 344465555556777765443 23344444444
Q ss_pred hcc--cCCCcchH----HHHHHHhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchh
Q 002126 137 QNL--QSQDNGNM----AVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLH 210 (962)
Q Consensus 137 ~~~--~~~~~~~~----~lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~ 210 (962)
.+. ++....+. .+..+...+|--.++ .++.. -.+.+..-+.+.++... +..
T Consensus 91 ~~~~~s~keq~rdissi~Lktvi~nl~P~~~~------~la~t-----------V~~~~t~~l~~~i~~qe------~~s 147 (1233)
T KOG1824|consen 91 CSNMLSGKEQLRDISSIGLKTVIANLPPSSSS------FLAAT-----------VCKRITPKLKQAISKQE------DVS 147 (1233)
T ss_pred hhhhccchhhhccHHHHHHHHHHhcCCCcccc------ccccH-----------HHHHHHHHHHHHhhhcc------cch
Confidence 221 01111111 122222222221110 01111 11222222222222211 122
Q ss_pred hhHHHHHHHHHHHH-HhcccccccchhhhhcchHHHHHHhcCCCCc--HHHHHHHHHHHHhcCC-ChhHHHHhhhhhhHH
Q 002126 211 DRNRKILRCLLSWV-RAGCFTEISQGSLAAHPLLNFVFNSLQVQSS--FDVAIEVLVELVGRHE-GLPQALLCRVPFLKE 286 (962)
Q Consensus 211 ~~~~~~l~cl~sWi-~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~~--~~~a~~~l~eil~~~~-~~~~~l~~~~~~l~~ 286 (962)
.++..+++-+.-.+ ++|.. +| + ....++..+...|..+.. +-.|+-++..+..... +....++..++.
T Consensus 148 ai~~e~lDil~d~lsr~g~l--l~-~--fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~--- 219 (1233)
T KOG1824|consen 148 AIKCEVLDILADVLSRFGTL--LP-N--FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLK--- 219 (1233)
T ss_pred hhHHHHHHHHHHHHHhhccc--Cc-c--hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Confidence 46667777777665 44421 11 1 123344455555554432 4567777766555432 222333333221
Q ss_pred hhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhcChhHHHHHHHHHhcccCC-CCCchhhhhhHHHHHHHHHHHhhcc
Q 002126 287 LLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFP-SEDWEIADSTLQFWSTLASYILGLD 365 (962)
Q Consensus 287 ~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p-~~d~~v~~~t~~FW~~l~e~l~~~~ 365 (962)
.+. +.......+-+.+.+.+++..-=.-+-+ +.-..+.++...++.- ..|++..+.+++-...|...
T Consensus 220 ~L~----~~~q~~~~rt~Iq~l~~i~r~ag~r~~~---h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r----- 287 (1233)
T KOG1824|consen 220 GLS----NRTQMSATRTYIQCLAAICRQAGHRFGS---HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR----- 287 (1233)
T ss_pred ccC----CCCchHHHHHHHHHHHHHHHHhcchhhc---ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh-----
Confidence 110 1122333444444444443332111211 2234556666665221 11456666655544443321
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCC-CCCC---------CCCCCCC--chH-------HHHHHHHHHHHHH
Q 002126 366 ASIAKNKKHVEDMFFSVFSALLDALLLRAQVDES-SFND---------DGMVDLP--DGL-------VQFRMNLVELLVD 426 (962)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~-~~~~---------~~~~d~~--d~f-------~~fR~~~~d~l~~ 426 (962)
......|+...+++-++.++.|+|+ ..++ ++.+|++ |++ =.-|+..+..+..
T Consensus 288 ---------cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a 358 (1233)
T KOG1824|consen 288 ---------CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA 358 (1233)
T ss_pred ---------ChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH
Confidence 1234566777888899999999775 1110 0000111 111 1235544444333
Q ss_pred HHHhcCcHHHHHHHHHhhh-------cCCCCCCCchhhhHHHHHHHhhhhcc---------ccCCCccc-------hhHH
Q 002126 427 ICQLLRSATFIQKVFFGSW-------GSANVPIPWKEVETKLFALNVVSEVV---------LQEGQAFD-------FSVI 483 (962)
Q Consensus 427 ~~~il~~~~~l~~~~~~l~-------~~~~~~~~W~~~Ea~Lf~l~~iae~i---------~~~~~~~~-------l~~i 483 (962)
+..- ...++...++.+- ....++..-.-+++.+-++..+...+ ..++..++ .+.|
T Consensus 359 ~IsS--R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~i 436 (1233)
T KOG1824|consen 359 VISS--RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLI 436 (1233)
T ss_pred HHhc--cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHH
Confidence 2211 0112222222110 00111223334455554544332111 11111111 1334
Q ss_pred HHHHHHhc-cC-chhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCc----hhHHHHHHHHHHHHH
Q 002126 484 MQLVAVLS-AS-RSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV----SSNACASALRKICED 557 (962)
Q Consensus 484 ~~~l~~l~-~~-~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~----~~~~Aa~al~~lc~~ 557 (962)
++.+.... +. -+++...|. .+..+++.|..-+.. +++..++-+...+.+.. ..--|-.-+..+-..
T Consensus 437 Vkai~~qlr~ks~kt~~~cf~-----lL~eli~~lp~~l~~---~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s 508 (1233)
T KOG1824|consen 437 VKAIQKQLREKSVKTRQGCFL-----LLTELINVLPGALAQ---HIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALIS 508 (1233)
T ss_pred HHHHHHHHhhccccchhhHHH-----HHHHHHHhCcchhhh---cccccchhhhhhcCCccchHHHHHHHHHHHHHHHhc
Confidence 44444322 11 112222211 112456666554443 44445555555556533 222222223333344
Q ss_pred hhcccCCCccHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHHhccCCc---hHHHHHHHHHHHHHHHHHHHhhhcccC
Q 002126 558 ASALIDEPSNLEILMWIGEALEK---RHLPLEDEEEVVGAISLILGSVSN---KELKNNLLARLLSSSYEAIGKLIDGDN 631 (962)
Q Consensus 558 c~~~l~~p~~~~~l~~~~~~l~~---~~l~~~~~~~l~eai~~vi~~lp~---~e~~~~~l~~ll~p~~~~l~~~~~~~~ 631 (962)
|..+-..| +++.+..+...... +++ ..+...+...+..+|..+.+ -. ...+...+++..+++++.-.
T Consensus 509 ~~p~~fhp-~~~~Ls~~v~~aV~d~fyKi-saEAL~v~~~lvkvirpl~~~~~~d-~~~~v~~m~~~tl~rL~a~d---- 581 (1233)
T KOG1824|consen 509 HPPEVFHP-HLSALSPPVVAAVGDPFYKI-SAEALLVCQQLVKVIRPLQPPSSFD-ASPYVKTMYDCTLQRLKATD---- 581 (1233)
T ss_pred CChhhccc-chhhhhhHHHHHhcCchHhh-hHHHHHHHHHHHHHhcccCCCccCC-CChhHHHHHHHHHHHHhccc----
Confidence 54432222 55555554433221 222 23456677788888876544 22 24566677777776665421
Q ss_pred CCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Q 002126 632 NHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALS 711 (962)
Q Consensus 632 ~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~ 711 (962)
.+.+.- .+.|.|++.++..+.. . ....+..++|++..-+++ =+..-.-+.+.|.+..
T Consensus 582 -----~DqeVk-------eraIscmgq~i~~fgD-~---------l~~eL~~~L~il~eRl~n-EiTRl~AvkAlt~Ia~ 638 (1233)
T KOG1824|consen 582 -----SDQEVK-------ERAISCMGQIIANFGD-F---------LGNELPRTLPILLERLGN-EITRLTAVKALTLIAM 638 (1233)
T ss_pred -----ccHHHH-------HHHHHHHHHHHHHHhh-h---------hhhhhHHHHHHHHHHHhc-hhHHHHHHHHHHHHHh
Confidence 111111 2335555544433331 1 011223334444443331 1111112234444433
Q ss_pred HHHHhhhhhhHhhHHHHHHHHHHhhhhhcC--cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCC
Q 002126 712 LAIQSSGQHFVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICD 789 (962)
Q Consensus 712 ~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~--~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~ 789 (962)
..+.. +..|.+..++..+.+-..+.++ .-.++.....++..||+.-. ...+..++.. +..+.+ +
T Consensus 639 S~l~i---~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~-~~~~e~vL~e------l~~Lis----e 704 (1233)
T KOG1824|consen 639 SPLDI---DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIP-AELLEAVLVE------LPPLIS----E 704 (1233)
T ss_pred cccee---ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHH------hhhhhh----H
Confidence 33221 1223333333333321112111 12256677778888875311 1122222221 111211 2
Q ss_pred CCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccC--chhHHHHHHHHHHHHHhh
Q 002126 790 QEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAM--HRGAALAAMSYLSCFLEE 853 (962)
Q Consensus 790 ~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~--e~~~~~a~~~fl~~li~~ 853 (962)
.+=.+.+--+.++.-.+...|..++....+ +++-++.-++.+ +-.+..+...|+..++-.
T Consensus 705 sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~----iL~~ii~ll~Spllqg~al~~~l~~f~alV~t 766 (1233)
T KOG1824|consen 705 SDLHVTQLAVAFLTTLAIIQPSSLLKISNP----ILDEIIRLLRSPLLQGGALSALLLFFQALVIT 766 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHhhh----hHHHHHHHhhCccccchHHHHHHHHHHHHHhc
Confidence 334467788899999999999998866434 444444444433 566777788888877743
No 28
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.06 E-value=7.4 Score=44.43 Aligned_cols=243 Identities=13% Similarity=0.137 Sum_probs=130.5
Q ss_pred CccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHH
Q 002126 565 PSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQ 644 (962)
Q Consensus 565 p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~ 644 (962)
|...+.|..+...+.... ..+.+.++++|-+++...... ..+....+++-+...+..+..+. +||.-.
T Consensus 22 p~~~~ll~~Lf~~i~~~~--s~ENeylMk~iMRvl~~~~e~--~~p~~~~il~~L~~il~~v~kNP------snP~Fn-- 89 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKPG--SAENEYLMKCIMRVLSVLQED--ILPIAVEILQHLTAILKEVSKNP------SNPRFN-- 89 (435)
T ss_dssp CCHHHHHHHHHHHHHTT---STC-HHHHHHHHHHHHHSTTT--TGGGHHHHHHHHHHHHHHHHTS---------HHHH--
T ss_pred hhHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHhCC------CCcchh--
Confidence 333445555555543322 267889999999999876653 23445555555556665555543 233211
Q ss_pred HhHHHHHHHHhhhhhcccccccCCCCCCCCch--HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh----
Q 002126 645 ILSSATRGLYRMGTVFSHLPVPLPTNPAGDDP--IFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG---- 718 (962)
Q Consensus 645 ~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p--~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~---- 718 (962)
.-..+.++.++|.... .+| +..+-+.+||.+..++++ +-.|.+.-+..++...+..-.
T Consensus 90 -----HylFEsi~~lir~~~~--------~~~~~v~~~E~~L~P~f~~ILq~---dV~EF~PYvfQIla~Lle~~~~~~~ 153 (435)
T PF03378_consen 90 -----HYLFESIGALIRFVCE--------ADPEAVSQFEEALFPPFQEILQQ---DVQEFIPYVFQILAQLLELRPSSPL 153 (435)
T ss_dssp -----HHHHHHHHHHHHHS-G--------GGHH---HHHHHHHHHHHHHHHT---T-TTTHHHHHHHHHHHHHHSS--S-
T ss_pred -----hhHHHHHHHHHHhccC--------CChhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1235566666665331 122 234557889999999973 335677777777777766543
Q ss_pred -hhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHH
Q 002126 719 -QHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEA 797 (962)
Q Consensus 719 -~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~ 797 (962)
+....++|+++.-. .++.....+....+++..+..-+..-.-.+.+..+++. ++.+-+. +. .| ..
T Consensus 154 p~~y~~L~~~Ll~p~--lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgv------FQkLi~s---k~-~D--~~ 219 (435)
T PF03378_consen 154 PDAYKQLFPPLLSPA--LWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGV------FQKLIAS---KA-ND--HY 219 (435)
T ss_dssp -TTTGGGHHHHTSGG--GGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHH------HHHHHT----TT-CH--HH
T ss_pred cHHHHHHHHHHcCcc--hhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHH------HHHHHCC---CC-cc--hH
Confidence 22344555554322 23322235556667777776654421001233333331 2223221 11 22 56
Q ss_pred HHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCc-hhHHHHHHHHHHHHHh
Q 002126 798 YTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH-RGAALAAMSYLSCFLE 852 (962)
Q Consensus 798 ~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e-~~~~~a~~~fl~~li~ 852 (962)
.|.++..++.++|...+. +++..++...+.-++..- ..-++..+.|+.-++.
T Consensus 220 gF~LL~~iv~~~p~~~l~---~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~ 272 (435)
T PF03378_consen 220 GFDLLESIVENLPPEALE---PYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAI 272 (435)
T ss_dssp HHHHHHHHHHHS-HHHHG---GGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHH---HHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence 889999999999997775 578888887777676332 2234555566554443
No 29
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.52 E-value=23 Score=43.05 Aligned_cols=137 Identities=12% Similarity=0.057 Sum_probs=78.8
Q ss_pred CCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-Ch-----
Q 002126 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQ----- 524 (962)
Q Consensus 451 ~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~-~p----- 524 (962)
+.+--.+|+..|...++...-++.-... ++.+...+..--..|..+ +-+-+ +.+.++|.+++.. +|
T Consensus 490 sss~~ki~~L~fl~~~L~s~~p~~fhp~-~~~Ls~~v~~aV~d~fyK------isaEA-L~v~~~lvkvirpl~~~~~~d 561 (1233)
T KOG1824|consen 490 SSSNLKIDALVFLYSALISHPPEVFHPH-LSALSPPVVAAVGDPFYK------ISAEA-LLVCQQLVKVIRPLQPPSSFD 561 (1233)
T ss_pred chHHHHHHHHHHHHHHHhcCChhhcccc-hhhhhhHHHHHhcCchHh------hhHHH-HHHHHHHHHHhcccCCCccCC
Confidence 4456789999999988876554322211 222222222212233212 22333 4788888888763 22
Q ss_pred --hchHHHHHHHHHhcc----cCchhHHHHHHHHHHHHHhhcccCCCccHHHHH-HHHHHHHhcCCChhhHHHHHHHHHH
Q 002126 525 --TNARPLLLFLAAGIS----EAVSSNACASALRKICEDASALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISL 597 (962)
Q Consensus 525 --~~L~~vL~~l~~~l~----~~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~ 597 (962)
.|..+++...++.+. +.+|+.+|-.++..+...-...+.. .++..+ -+.+.+. ..-.|..-++|...
T Consensus 562 ~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~--eL~~~L~il~eRl~----nEiTRl~AvkAlt~ 635 (1233)
T KOG1824|consen 562 ASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGN--ELPRTLPILLERLG----NEITRLTAVKALTL 635 (1233)
T ss_pred CChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHh----chhHHHHHHHHHHH
Confidence 467777776666665 3558999988888887766665543 333322 2233322 23468888888888
Q ss_pred Hhcc
Q 002126 598 ILGS 601 (962)
Q Consensus 598 vi~~ 601 (962)
|...
T Consensus 636 Ia~S 639 (1233)
T KOG1824|consen 636 IAMS 639 (1233)
T ss_pred HHhc
Confidence 8644
No 30
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.42 E-value=0.37 Score=32.07 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=24.1
Q ss_pred HHHHHHHhcccCc--hhHHHHHHHHHHHHHh
Q 002126 530 LLLFLAAGISEAV--SSNACASALRKICEDA 558 (962)
Q Consensus 530 vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c 558 (962)
+++.+++.+.+|+ ++.+|+.++..|++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 4678888888765 9999999999999876
No 31
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.16 E-value=47 Score=39.53 Aligned_cols=342 Identities=13% Similarity=0.098 Sum_probs=170.5
Q ss_pred ChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHH----hhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 002126 523 FQTNARPLLLFLAAGISEAV--SSNACASALRKICED----ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAIS 596 (962)
Q Consensus 523 ~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~----c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~ 596 (962)
.-+-+++|++|+=..+.+|+ -+.+|+.||-++-+. |...++ ++.++.+..... .+ ..-.+...--.+|
T Consensus 358 ~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV-~qalp~ii~lm~---D~--sl~VkdTaAwtlg 431 (859)
T KOG1241|consen 358 GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV-IQALPSIINLMS---DP--SLWVKDTAAWTLG 431 (859)
T ss_pred cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH-hhhhHHHHHHhc---Cc--hhhhcchHHHHHH
Confidence 45677899999999999997 578899999888644 333332 233444433321 11 1122223334667
Q ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhh-hcccccccCCCCCCCCc
Q 002126 597 LILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGT-VFSHLPVPLPTNPAGDD 675 (962)
Q Consensus 597 ~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~-i~~~l~~~~~~~~~~~~ 675 (962)
.+...+|..-.-..++...+.-+++.+ ...+. .. ..++..+..|+. +.+.... .++..
T Consensus 432 rI~d~l~e~~~n~~~l~~~l~~l~~gL----~DePr--------va----~N~CWAf~~Laea~~eA~~s-----~~qt~ 490 (859)
T KOG1241|consen 432 RIADFLPEAIINQELLQSKLSALLEGL----NDEPR--------VA----SNVCWAFISLAEAAYEAAVS-----NGQTD 490 (859)
T ss_pred HHHhhchhhcccHhhhhHHHHHHHHHh----hhCch--------HH----HHHHHHHHHHHHHHHHhccC-----CCCCC
Confidence 777767643222333444443333333 22211 00 123444444431 2222111 12234
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHH
Q 002126 676 PIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEE 755 (962)
Q Consensus 676 p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~ 755 (962)
|..+.++.|..-+..+-...-+++....-++...+..+++....++.|.+..+..++......+ +. +.+. .
T Consensus 491 ~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~------i~--~~~l-~ 561 (859)
T KOG1241|consen 491 PATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQT------IS--SQIL-S 561 (859)
T ss_pred ccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH------HH--HHhc-c
Confidence 4445555545444444431122555666677777777777666666665544443333322211 00 0000 0
Q ss_pred hcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHh--------------------hhHHHHh
Q 002126 756 FGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRT--------------------SRKEVLA 815 (962)
Q Consensus 756 ~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~--------------------~p~~~l~ 815 (962)
+.+. .-...++.++....+.. ...+. .+-|++.+...+++-|++++ -..-|.
T Consensus 562 ~~dr-~q~~eLQs~Lc~~Lq~i-~rk~~-----~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~- 633 (859)
T KOG1241|consen 562 LADR-AQLNELQSLLCNTLQSI-IRKVG-----SDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA- 633 (859)
T ss_pred HhhH-HHHHHHHHHHHHHHHHH-HHHcc-----ccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH-
Confidence 0000 00111222111111111 11111 14455555555555555554 222222
Q ss_pred hchhchHHHHHHHHHhh-ccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhc
Q 002126 816 ASGALLEVSFQKAAICC-TAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALL 894 (962)
Q Consensus 816 ~~~~~l~~~l~~~l~~l-~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~ 894 (962)
...+.+.++...+| ...|+..+.++..+..++.. +++.-+..|--.++..|+.++.
T Consensus 634 ---kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~r--------------------aL~~~i~py~d~~mt~Lvq~Ls 690 (859)
T KOG1241|consen 634 ---KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLAR--------------------ALEDDILPYCDELMTVLVQCLS 690 (859)
T ss_pred ---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH--------------------HHHhhhhhHHHHHHHHHHHHcc
Confidence 23445666777888 57789999999888776653 2444455666777888888888
Q ss_pred C-CCcccchhhHHHHHHHHHHHhhhhcccchhhccchhHHHHHHHHHHhhh
Q 002126 895 G-VSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLF 944 (962)
Q Consensus 895 g-~~~rs~~~~~~~iL~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~l~~~ 944 (962)
. ..+|+.=+.+-.++...+ .+| ...|..+|..++.-+
T Consensus 691 s~~~hR~vKP~IlS~FgDIA---laI----------g~~F~~Yl~~vm~ll 728 (859)
T KOG1241|consen 691 SPNLHRNVKPAILSVFGDIA---LAI----------GADFEPYLEMVMPLL 728 (859)
T ss_pred CccccccccchHHHHHHHHH---HHH----------HHhHHHHHHHHHHHH
Confidence 4 477777666666665555 122 226777777666644
No 32
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=89.22 E-value=18 Score=39.51 Aligned_cols=170 Identities=9% Similarity=0.153 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhc------CCCCcHH-HHHHHHHHHHhcCC----ChhHHHHh
Q 002126 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSL------QVQSSFD-VAIEVLVELVGRHE----GLPQALLC 279 (962)
Q Consensus 211 ~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L------~~~~~~~-~a~~~l~eil~~~~----~~~~~l~~ 279 (962)
.++.++|+-+..|+.... +.+. ....+++.+++.+ ..|+.++ .+..++..++.+.. +....++.
T Consensus 42 ~iKkeIL~Li~t~i~~~~----~~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~ 116 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAE----DPEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE 116 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-----HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC----CHHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 467888999999998541 1222 3334555544422 2455555 35666666666533 22333333
Q ss_pred hhhh-hHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhcCh-hHHHHHHHHHhcccCCCCCchhhhhhHHHHHHH
Q 002126 280 RVPF-LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASP-EALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (962)
Q Consensus 280 ~~~~-l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l 357 (962)
.+.. ..+.+. .-.++-+|...++.+++..+.+.+...+..-|+ .+..+++.++....|+ +.+|++.+++.-..+
T Consensus 117 ~vf~~Tl~MI~--~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~--~~~I~~~~L~~l~~l 192 (319)
T PF08767_consen 117 AVFECTLPMIN--KDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT--NREISETGLNILLEL 192 (319)
T ss_dssp HHHHHHHHHHS--STSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHH
Confidence 3322 111111 111233577889999999999998888877654 5667899999999998 689999999888887
Q ss_pred HHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhc
Q 002126 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQ 395 (962)
Q Consensus 358 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~ 395 (962)
.+.+...+. +.....++.+|..++..++.-+.
T Consensus 193 l~~~~~~~~------~~~~~F~~~y~~~il~~if~vlt 224 (319)
T PF08767_consen 193 LNNVSKTNP------EFANQFYQQYYLDILQDIFSVLT 224 (319)
T ss_dssp HHHHHH-SH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 776654111 23445677777777777766553
No 33
>PRK09687 putative lyase; Provisional
Probab=88.43 E-value=39 Score=36.20 Aligned_cols=208 Identities=15% Similarity=0.108 Sum_probs=116.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHH
Q 002126 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (962)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~ 88 (962)
+...+..|. ++|...|..|...|.++. +++++..+..+++++ +..+|.+|+.+|.. +.. +......
T Consensus 25 ~~~L~~~L~-d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~------d~~vR~~A~~aLg~-lg~-----~~~~~~~ 90 (280)
T PRK09687 25 DDELFRLLD-DHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSK------NPIERDIGADILSQ-LGM-----AKRCQDN 90 (280)
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCC------CHHHHHHHHHHHHh-cCC-----CccchHH
Confidence 344444554 678889999999998775 689999999998764 36999999999975 221 1110111
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhccC-CchHHHHHHHhhccc--------------CCCcchHHHHHHH
Q 002126 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEH-GKPIEKLFYSLQNLQ--------------SQDNGNMAVLEML 153 (962)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~~W-~~~i~~li~~~~~~~--------------~~~~~~~~lL~iL 153 (962)
.-..|...+. ......|+...+.+|+.+......| +..+..+...+.... +++...+.++..|
T Consensus 91 a~~~L~~l~~--~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L 168 (280)
T PRK09687 91 VFNILNNLAL--EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLL 168 (280)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Confidence 1222222222 1344678888888888775444334 344444433332210 1122223333333
Q ss_pred hhcccccccccccccCCCHHHHHHHHHHHHh---hhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccc
Q 002126 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLS---HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (962)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~---~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~ 230 (962)
+ .+ ...-|......|.. ..+.+...|...+.. ++..++..+...+..+ +
T Consensus 169 ~---d~-----------~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D--------~~~~VR~~A~~aLg~~---~--- 220 (280)
T PRK09687 169 K---DP-----------NGDVRNWAAFALNSNKYDNPDIREAFVAMLQD--------KNEEIRIEAIIGLALR---K--- 220 (280)
T ss_pred c---CC-----------CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC--------CChHHHHHHHHHHHcc---C---
Confidence 2 11 12344444444443 256677777666543 2345777776666531 1
Q ss_pred cccchhhhhcchHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 002126 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVG 268 (962)
Q Consensus 231 ~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eil~ 268 (962)
....++.+++.|.++..+..+++.+.++=+
T Consensus 221 --------~~~av~~Li~~L~~~~~~~~a~~ALg~ig~ 250 (280)
T PRK09687 221 --------DKRVLSVLIKELKKGTVGDLIIEAAGELGD 250 (280)
T ss_pred --------ChhHHHHHHHHHcCCchHHHHHHHHHhcCC
Confidence 234677778888887777677777665443
No 34
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=87.31 E-value=65 Score=37.52 Aligned_cols=216 Identities=9% Similarity=0.116 Sum_probs=120.3
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchh
Q 002126 377 DMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKE 456 (962)
Q Consensus 377 ~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~ 456 (962)
..+.|++..++..++.+.- | -..+-++-=.+..+.+++|...-|.+.++..++..+.. ..|+.
T Consensus 208 ~~~EPyiv~~lp~il~~~~---d---------~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~-----~kWrt 270 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFG---D---------KINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE-----AKWRT 270 (569)
T ss_pred CCCCchHHhhHHHHHHHhh---c---------cchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH-----Hhhhh
Confidence 3456666677766666552 0 01111222233445666666655555667766666543 26999
Q ss_pred hhHHHHHHHhhhhccccCCCccchhHHHHHHH-Hhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHH
Q 002126 457 VETKLFALNVVSEVVLQEGQAFDFSVIMQLVA-VLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFL 534 (962)
Q Consensus 457 ~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~-~l~-~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l 534 (962)
-.+++..+++++++.+..=+ ..+|.+...+. .+. .||. ++.+. ...+-+|++.+ +||+ +.+.++-+
T Consensus 271 K~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~e--------vr~a~-~~~l~~~~svi-dN~d-I~~~ip~L 338 (569)
T KOG1242|consen 271 KMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPE--------VRKAG-IETLLKFGSVI-DNPD-IQKIIPTL 338 (569)
T ss_pred HHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHH--------HHHHH-HHHHHHHHHhh-ccHH-HHHHHHHH
Confidence 99999999999998774211 11344444333 333 2333 44444 37788887754 5677 88999999
Q ss_pred HHhcccCc-hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHH
Q 002126 535 AAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGE-ALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLL 612 (962)
Q Consensus 535 ~~~l~~~~-~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~-~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l 612 (962)
+.++.+|. -...+.+++.. .-=-+-+.++.++.+.-+.. .+. .-+...+...+.-++....-++++.....++
T Consensus 339 ld~l~dp~~~~~e~~~~L~~---ttFV~~V~~psLalmvpiL~R~l~--eRst~~kr~t~~IidNm~~LveDp~~lapfl 413 (569)
T KOG1242|consen 339 LDALADPSCYTPECLDSLGA---TTFVAEVDAPSLALMVPILKRGLA--ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL 413 (569)
T ss_pred HHHhcCcccchHHHHHhhcc---eeeeeeecchhHHHHHHHHHHHHh--hccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence 99999997 34444443321 10001122335555555442 222 1233445666667777776676655555555
Q ss_pred HHHHHHHHHHHHhhhccc
Q 002126 613 ARLLSSSYEAIGKLIDGD 630 (962)
Q Consensus 613 ~~ll~p~~~~l~~~~~~~ 630 (962)
..| +..++..+...
T Consensus 414 ~~L----lp~lk~~~~d~ 427 (569)
T KOG1242|consen 414 PSL----LPGLKENLDDA 427 (569)
T ss_pred HHH----hhHHHHHhcCC
Confidence 444 45555555443
No 35
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.98 E-value=14 Score=38.12 Aligned_cols=139 Identities=16% Similarity=0.116 Sum_probs=79.8
Q ss_pred CCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHH----Hhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhCh
Q 002126 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVA----VLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAFQ 524 (962)
Q Consensus 450 ~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~----~l~-~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p 524 (962)
.+.+|.....+|=-++.+...-...+. .+.++..+. .+. .....|. .|.. ++|.+++.++.-+..+-
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~---~~~~~~~l~~~~~~i~~~l~d~Rs----~v~~-~A~~~l~~l~~~l~~~~ 88 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDF---PPDFVECLRQLLDAIIKQLSDLRS----KVSK-TACQLLSDLARQLGSHF 88 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B--------HHHHHHHH---HHHHH-S-HH-------HHH-HHHHHHHHHHHHHGGGG
T ss_pred CccCHHHHHHHHHHHHHHHHcCCcccc---HHHHHHHHHHhHHHHHHHHhhhHH----HHHH-HHHHHHHHHHHHHhHhH
Confidence 356899999999999887654421121 233433333 221 1111121 1334 44689999988887764
Q ss_pred h-chHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002126 525 T-NARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (962)
Q Consensus 525 ~-~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (962)
+ +++.+++-|++.+.++. ++.+|..++..+|+.|.. . +.. +....... ...-+...|....+.+..++..
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~--~-~~~---~~~~l~~~-~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY--S-PKI---LLEILSQG-LKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH---HHHHHHHH-TT-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc--H-HHH---HHHHHHHH-HhCCCHHHHHHHHHHHHHHHHH
Confidence 3 67888888888888754 789999999999998871 0 111 12222111 1233577899999999999998
Q ss_pred CC
Q 002126 602 VS 603 (962)
Q Consensus 602 lp 603 (962)
.+
T Consensus 162 ~~ 163 (228)
T PF12348_consen 162 WG 163 (228)
T ss_dssp --
T ss_pred cc
Confidence 88
No 36
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=85.37 E-value=2.6 Score=36.85 Aligned_cols=40 Identities=15% Similarity=0.011 Sum_probs=34.9
Q ss_pred hhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccC
Q 002126 524 QTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALID 563 (962)
Q Consensus 524 p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~ 563 (962)
.+|++.+++-++.++.+++ ++-.|+.++.++++.++..+.
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l 63 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL 63 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999755 999999999999999987653
No 37
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=84.03 E-value=60 Score=37.74 Aligned_cols=227 Identities=10% Similarity=0.101 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCc--chHHHHHHHHHHHhc
Q 002126 680 LLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNH--ECYIRTASVVIEEFG 757 (962)
Q Consensus 680 ~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~--~~~L~l~~~lv~~~g 757 (962)
-+.+|.....++++ +..++.++++...-+-+.+....-+. -+...+++.+.+.|... |. ...|.++.-+++ .|
T Consensus 189 EF~qIF~lc~qiLE--~~~~~SLi~ATLesllrfl~wiPl~y-IfeTnIieLv~~~f~s~-pd~r~~tl~CLtEi~~-L~ 263 (1053)
T COG5101 189 EFPQIFGLCKQILE--YSRDESLIEATLESLLRFLEWIPLDY-IFETNIIELVLEHFNSM-PDTRVATLSCLTEIVD-LG 263 (1053)
T ss_pred hHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHhhCchhH-HHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHh-hc
Confidence 46778888888886 77899999887776666555433221 24566889888888754 43 233555555443 56
Q ss_pred CCCCccchHHHHHHHHhhhHHHHHhhc------------CCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHH--
Q 002126 758 HKDEYGPLFVTTFERFSQAASVRALNS------------SYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEV-- 823 (962)
Q Consensus 758 ~~~~~~~~l~~l~~~l~~~~~~~~l~~------------~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~-- 823 (962)
+.+...+.....+..+.+++-+....+ .+.-.+.-+-++++-.|++.+...+-..+-.. ...+.
T Consensus 264 ~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE~~--e~~e~ll 341 (1053)
T COG5101 264 RHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAR--EMAENLL 341 (1053)
T ss_pred cCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhcCh--hHHHHHH
Confidence 554333333332222222220111100 01112345567777777777777766654332 22222
Q ss_pred -HHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhh-----ccCCCC----CCCCc-----cHHHHHHHHHHhccHHHHHH
Q 002126 824 -SFQKAAICCTAMHRGAALAAMSYLSCFLEECLAS-----LLGYTT----SIPEG-----SFNAMAIQVISHSGEGLVSN 888 (962)
Q Consensus 824 -~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~-----~~~~~~----~~~~~-----~~~~~~~~~~~~~G~~Lv~~ 888 (962)
..++.+.--..+|+++.+.++..|.+++-.-.+- .++... +.+.+ .-...-..+=.+....++++
T Consensus 342 nah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~~~pLrkhiY~~ilsq 421 (1053)
T COG5101 342 NAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDSTKPLRKHIYIGILSQ 421 (1053)
T ss_pred HHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhcccchHHHHHHHHHHH
Confidence 2334444345789999999999999998443220 011000 00000 00011111222344566777
Q ss_pred HHHHhcCCCcccc-----hhhHHHHHHHHH
Q 002126 889 VVYALLGVSAMSR-----VHKCATILQQLA 913 (962)
Q Consensus 889 ll~~~~g~~~rs~-----~~~~~~iL~~l~ 913 (962)
+...+..+.+|.+ .+..+|+.|..+
T Consensus 422 LrlvlienMvrPEEVliVendegEivRefv 451 (1053)
T COG5101 422 LRLVLIENMVRPEEVLIVENDEGEIVREFV 451 (1053)
T ss_pred HHHHHHHcCCCcceEEEEECCCcHHHHHHh
Confidence 7777777777754 345666666666
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=83.48 E-value=1e+02 Score=36.39 Aligned_cols=426 Identities=16% Similarity=0.138 Sum_probs=208.6
Q ss_pred CCCChHHHHHHHHHHHHhhcC-hHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Q 002126 18 HDTESCNRVAANQWLVQFQQT-DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVA 96 (962)
Q Consensus 18 ~~~d~~~~~~A~~~L~~~Q~s-~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr~~Ll~~ 96 (962)
.++|...|+-+.=++..+-.. ++..-++..-+..+= .+.+..+|-.|..++-.-. +++..+.+-..+...
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl--~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDL--NSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKL 122 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh--cCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHH
Confidence 356788899999988887665 554555555544321 1345678888888886532 456666666666665
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhhccC-Cc-hHHHHHHHhhcccCCCcchHHHHHHHhhcccccccccccccCCCHHH
Q 002126 97 AKRFSSGPPQLLTQICLALSALILRAVEH-GK-PIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAH 174 (962)
Q Consensus 97 l~~~~~~~~~v~~kL~~aLa~l~~~~~~W-~~-~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~l~~~~ 174 (962)
+. ..++.||++-+.++..++...++= ++ +++.+...+... ++......+.++..+ .. .+..
T Consensus 123 l~---~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i--~~----------~~~~ 185 (526)
T PF01602_consen 123 LS---DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDK--DPSVVSAALSLLSEI--KC----------NDDS 185 (526)
T ss_dssp HH---SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHH--HC----------THHH
T ss_pred hc---CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCC--cchhHHHHHHHHHHH--cc----------Ccch
Confidence 54 456799999999999998876521 22 566666666542 233333445555444 11 0000
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC-
Q 002126 175 RSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ- 253 (962)
Q Consensus 175 r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~- 253 (962)
. ....+.++..|.+.+.. +++-.+..+++++..+.+.. ........+++.+...+.+.
T Consensus 186 ~-------~~~~~~~~~~L~~~l~~--------~~~~~q~~il~~l~~~~~~~------~~~~~~~~~i~~l~~~l~s~~ 244 (526)
T PF01602_consen 186 Y-------KSLIPKLIRILCQLLSD--------PDPWLQIKILRLLRRYAPME------PEDADKNRIIEPLLNLLQSSS 244 (526)
T ss_dssp H-------TTHHHHHHHHHHHHHTC--------CSHHHHHHHHHHHTTSTSSS------HHHHHHHHHHHHHHHHHHHHH
T ss_pred h-------hhhHHHHHHHhhhcccc--------cchHHHHHHHHHHHhcccCC------hhhhhHHHHHHHHHHHhhccc
Confidence 0 01122333333333321 23345667777777554421 11100034666666665521
Q ss_pred -CcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhcChhHHHHHHH
Q 002126 254 -SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADA 332 (962)
Q Consensus 254 -~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ 332 (962)
...-.|+.++..+-... ...+.+++.+.. .+.+.|.+..--..+.+..++..+.+.+. + ...
T Consensus 245 ~~V~~e~~~~i~~l~~~~-~~~~~~~~~L~~--------lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~-------~~~ 307 (526)
T PF01602_consen 245 PSVVYEAIRLIIKLSPSP-ELLQKAINPLIK--------LLSSSDPNVRYIALDSLSQLAQSNPPAVF-N-------QSL 307 (526)
T ss_dssp HHHHHHHHHHHHHHSSSH-HHHHHHHHHHHH--------HHTSSSHHHHHHHHHHHHHHCCHCHHHHG-T-------HHH
T ss_pred cHHHHHHHHHHHHhhcch-HHHHhhHHHHHH--------HhhcccchhehhHHHHHHHhhcccchhhh-h-------hhh
Confidence 11222333333211111 111222222211 23344444332233444445444433222 1 111
Q ss_pred HHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCch
Q 002126 333 LLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDG 412 (962)
Q Consensus 333 ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~ 412 (962)
.+.+..+ +.|..|...+++--+.+.+. .- ...+++.+...+. +. .
T Consensus 308 ~~~~l~~-~~d~~Ir~~~l~lL~~l~~~----------------~n----~~~Il~eL~~~l~-~~------~------- 352 (526)
T PF01602_consen 308 ILFFLLY-DDDPSIRKKALDLLYKLANE----------------SN----VKEILDELLKYLS-EL------S------- 352 (526)
T ss_dssp HHHHHHC-SSSHHHHHHHHHHHHHH--H----------------HH----HHHHHHHHHHHHH-HC--------------
T ss_pred hhheecC-CCChhHHHHHHHHHhhcccc----------------cc----hhhHHHHHHHHHH-hc------c-------
Confidence 1122222 11456766677655554432 01 1123333333331 00 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHh
Q 002126 413 LVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL 490 (962)
Q Consensus 413 f~~fR~~~~d~l~~~~~il~~--~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l 490 (962)
-.+||..+...+..++....+ +.++..++..+... ...-.+.+...+..+....++ .. -..+..++..+
T Consensus 353 d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~-----~~~~~~~~~~~i~~ll~~~~~-~~---~~~l~~L~~~l 423 (526)
T PF01602_consen 353 DPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEIS-----GDYVSNEIINVIRDLLSNNPE-LR---EKILKKLIELL 423 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCT-----GGGCHCHHHHHHHHHHHHSTT-TH---HHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhc-----cccccchHHHHHHHHhhcChh-hh---HHHHHHHHHHH
Confidence 013787777777777665433 34555555544321 123345555566655544332 11 12233344444
Q ss_pred ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcc--cCchhHHHHHHHHHHHHHhh
Q 002126 491 SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGIS--EAVSSNACASALRKICEDAS 559 (962)
Q Consensus 491 ~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~--~~~~~~~Aa~al~~lc~~c~ 559 (962)
.+...+. ++. ++++++|+|++.+.. .+..+.++..+.+.+. ++.++...-.++.++-....
T Consensus 424 ~~~~~~~------~~~-~~~wilGEy~~~~~~-~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 424 EDISSPE------ALA-AAIWILGEYGELIEN-TESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp TSSSSHH------HHH-HHHHHHHHHCHHHTT-TTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhHHH------HHH-HHHhhhcccCCcccc-cccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC
Confidence 4433222 333 446999999998776 1144455555555554 24478888888888886654
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=83.42 E-value=1.2e+02 Score=37.27 Aligned_cols=296 Identities=10% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHh
Q 002126 436 FIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGS 515 (962)
Q Consensus 436 ~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ 515 (962)
.....+..+.........|.++ +.|..++...+.++... ..++..+.....|.. .+|+..++ +++-.
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi----~IL~lL~~y~P~~~~e~--~~il~~l~~~Lq~~N------~AVVl~Ai-k~il~ 282 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQL----YILELLAAQRPSDKESA--ETLLTRVLPRMSHQN------PAVVMGAI-KVVAN 282 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHH----HHHHHHHhcCCCCcHHH--HHHHHHHHHHhcCCC------HHHHHHHH-HHHHH
Q ss_pred hHHHHHhChhchHHHHHHHHHhc-----ccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHH
Q 002126 516 YSKWISAFQTNARPLLLFLAAGI-----SEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEE 590 (962)
Q Consensus 516 ys~wl~~~p~~L~~vL~~l~~~l-----~~~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~ 590 (962)
|.... +|+....++..+...+ ..|+++-.+-+.+..|...++..+.. +...|.-.+.. +...+..
T Consensus 283 l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~--~~~~Ff~~~~D------p~yIK~~ 352 (746)
T PTZ00429 283 LASRC--SQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRT--NLDSFYVRYSD------PPFVKLE 352 (746)
T ss_pred hcCcC--CHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHH--HHHhhhcccCC------cHHHHHH
Q ss_pred HHHHHHHHhccCCchHHHHHHHH-------HHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccc
Q 002126 591 VVGAISLILGSVSNKELKNNLLA-------RLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHL 663 (962)
Q Consensus 591 l~eai~~vi~~lp~~e~~~~~l~-------~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l 663 (962)
-++-+..++..-..++...+..+ .+-.-.+..+.++...-+. .+-.+++.|..+++.-
T Consensus 353 KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~---------------~a~~cV~~Ll~ll~~~ 417 (746)
T PTZ00429 353 KLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS---------------VAPDCANLLLQIVDRR 417 (746)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH---------------HHHHHHHHHHHHhcCC
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHH--------------HHHHHHHhhhhhhHhhHHHHH
Q 002126 664 PVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACR--------------ALSLAIQSSGQHFVTLLPQVL 729 (962)
Q Consensus 664 ~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~--------------~~~~~~~~l~~~~~p~l~~~~ 729 (962)
.. +..++.-++..+++ ++++.. ++..+|. .+-.++.+++..+ +-.+.++
T Consensus 418 ~~--------------~v~e~i~vik~Ilr-kyP~~~-il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I-~~a~~~L 480 (746)
T PTZ00429 418 PE--------------LLPQVVTAAKDIVR-KYPELL-MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI-ENGKDII 480 (746)
T ss_pred ch--------------hHHHHHHHHHHHHH-HCccHH-HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH-hhHHHHH
Q ss_pred HHHHHhhhhhcCcchHHHHHHHHHHHhcCCC-CccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHH
Q 002126 730 DCLSTNFVSFQNHECYIRTASVVIEEFGHKD-EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYT 799 (962)
Q Consensus 730 ~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~-~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f 799 (962)
+.++..|... +...=+.+++.++..|-..+ +..+.+..++...+.. .++||+.+-.+
T Consensus 481 ~~~i~~f~~E-~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~------------~~d~DVRDRA~ 538 (746)
T PTZ00429 481 QRFIDTIMEH-EQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTH------------SDDPDVRDRAF 538 (746)
T ss_pred HHHHhhhccC-CHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc------------CCChhHHHHHH
No 40
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=83.27 E-value=91 Score=35.64 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHh
Q 002126 792 PDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLE 852 (962)
Q Consensus 792 pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~ 852 (962)
.+....|+.-+..++++.|..++.. .++.++...+.++..++.+...++++-+..++.
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~---~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLP---ELPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3378889999999999999988864 588899999999999999999999998888885
No 41
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=83.13 E-value=35 Score=40.39 Aligned_cols=164 Identities=9% Similarity=0.051 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCc
Q 002126 415 QFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASR 494 (962)
Q Consensus 415 ~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~ 494 (962)
+-|+..-++|=++...+|+..+|..+++.+..+ +=|..=..--+++-+||.+.. +..++.++..- ..|
T Consensus 940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvq-----eRq~RvcTtvaIaIVaE~c~p------FtVLPalmneY-rtP 1007 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQ-----ERQNRVCTTVAIAIVAETCGP------FTVLPALMNEY-RTP 1007 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHH-----HHHhchhhhhhhhhhhhhcCc------hhhhHHHHhhc-cCc
Confidence 456666678888888999887787777765332 122222334566667777643 23333333321 122
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHHH----hChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccH
Q 002126 495 SEELKGFMHIVYRSLADVIGSYSKWIS----AFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNL 568 (962)
Q Consensus 495 ~~~~~~~~~v~~~t~~~~ig~ys~wl~----~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~ 568 (962)
... | +.. ++.+++.+|+ ...+|+-.+++.|-.+|.+.+ -++.|+.+++.+.-.|.... ..
T Consensus 1008 e~n------V-QnG---VLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g----~e 1073 (1172)
T KOG0213|consen 1008 EAN------V-QNG---VLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTG----CE 1073 (1172)
T ss_pred hhH------H-HHh---HHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcC----cH
Confidence 211 1 212 2333333333 256799999999999998644 57889999999998877633 44
Q ss_pred HHHHHHHHHHH--hcCCChhhHHHHHHHHHHHhccCCc
Q 002126 569 EILMWIGEALE--KRHLPLEDEEEVVGAISLILGSVSN 604 (962)
Q Consensus 569 ~~l~~~~~~l~--~~~l~~~~~~~l~eai~~vi~~lp~ 604 (962)
+.+..+...+- -..-++.....+.|++-.+-.++.+
T Consensus 1074 da~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1074 DALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred HHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhch
Confidence 54444433221 1222455566666666665555554
No 42
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.05 E-value=78 Score=36.55 Aligned_cols=259 Identities=16% Similarity=0.163 Sum_probs=132.2
Q ss_pred CchhHHHHHHHHHHHHHhhc---ccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 002126 541 AVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLS 617 (962)
Q Consensus 541 ~~~~~~Aa~al~~lc~~c~~---~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~ 617 (962)
|.++-.||.|+.+||..-.. .....-..+.|..+... -+.+.++..+=|+|.|+..-|.-.. .-.-...+.
T Consensus 124 ~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s-----~~~~v~eQavWALgNIagds~~~Rd-~vl~~g~l~ 197 (514)
T KOG0166|consen 124 PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS-----PSADVREQAVWALGNIAGDSPDCRD-YVLSCGALD 197 (514)
T ss_pred hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC-----CcHHHHHHHHHHHhccccCChHHHH-HHHhhcchH
Confidence 67899999999999974332 22222356777666542 2456788889999999877654321 111123445
Q ss_pred HHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhc
Q 002126 618 SSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHM 697 (962)
Q Consensus 618 p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~ 697 (962)
|++..+.. . .+ ...+..+.. .|+.+.|+-+ ++|....++.++|++..++ +.
T Consensus 198 pLl~~l~~----~-------~~---~~~lRn~tW---~LsNlcrgk~---------P~P~~~~v~~iLp~L~~ll---~~ 248 (514)
T KOG0166|consen 198 PLLRLLNK----S-------DK---LSMLRNATW---TLSNLCRGKN---------PSPPFDVVAPILPALLRLL---HS 248 (514)
T ss_pred HHHHHhcc----c-------cc---hHHHHHHHH---HHHHHHcCCC---------CCCcHHHHHHHHHHHHHHH---hc
Confidence 55544321 1 11 001111222 2334445433 3566678889999999987 44
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhH-----hhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcCCCCccchHHHHHH-
Q 002126 698 ENGNLSTAACRALSLAIQSSGQHFV-----TLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFE- 771 (962)
Q Consensus 698 ~~~~v~e~~c~~~~~~~~~l~~~~~-----p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~- 771 (962)
.|.+|..-+|-.+........+.+. ..+|.+++.+.. .... -....|....-++ .|++.. ... ++.
T Consensus 249 ~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~-~~~~-v~~PaLRaiGNIv--tG~d~Q-Tq~---vi~~ 320 (514)
T KOG0166|consen 249 TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH-SSPK-VVTPALRAIGNIV--TGSDEQ-TQV---VINS 320 (514)
T ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC-CCcc-cccHHHhhcccee--eccHHH-HHH---HHhc
Confidence 8999998888888765433222221 233444443321 1000 0111222222222 133311 000 111
Q ss_pred HHhhhHHHHHhhcCCCCCCCCc-hHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 002126 772 RFSQAASVRALNSSYICDQEPD-LVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCF 850 (962)
Q Consensus 772 ~l~~~~~~~~l~~~~~~~~~pD-~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~l 850 (962)
....+ +..+.+ ..+.+ +.++..=.++.+..-++..+-.. .-..+++..+..+...|..+.|.|+--++++
T Consensus 321 ~~L~~--l~~ll~----~s~~~~ikkEAcW~iSNItAG~~~qiqaV---ida~l~p~Li~~l~~~ef~~rKEAawaIsN~ 391 (514)
T KOG0166|consen 321 GALPV--LSNLLS----SSPKESIKKEACWTISNITAGNQEQIQAV---IDANLIPVLINLLQTAEFDIRKEAAWAISNL 391 (514)
T ss_pred ChHHH--HHHHhc----cCcchhHHHHHHHHHHHhhcCCHHHHHHH---HHcccHHHHHHHHhccchHHHHHHHHHHHhh
Confidence 00011 111211 23344 56667777777777666544321 1113555666677777777877777655544
Q ss_pred H
Q 002126 851 L 851 (962)
Q Consensus 851 i 851 (962)
.
T Consensus 392 t 392 (514)
T KOG0166|consen 392 T 392 (514)
T ss_pred c
Confidence 4
No 43
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.02 E-value=1.3e+02 Score=37.24 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCCCcH--HHHHHHHHHHHhcCC--------C---hhHHHH
Q 002126 212 RNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSF--DVAIEVLVELVGRHE--------G---LPQALL 278 (962)
Q Consensus 212 ~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~--~~a~~~l~eil~~~~--------~---~~~~l~ 278 (962)
++..--.|+..-|.. ..| + ....+++.+-..|++++.. -.+.-|+-++...++ + ..+.++
T Consensus 105 iRvql~~~l~~Ii~~----D~p-~--~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~f 177 (1010)
T KOG1991|consen 105 IRVQLTACLNTIIKA----DYP-E--QWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELF 177 (1010)
T ss_pred HHHHHHHHHHHHHhc----CCc-c--cchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 555566677777763 223 2 2567888888888887653 467778888877653 1 345667
Q ss_pred hhhhhhHHhhhhhhhccCcH---hHHhhHHHHHHHHhHhhhHHHHhcChhHHHHHHHHHhcccCCC
Q 002126 279 CRVPFLKELLLLPALTDGDE---KVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPS 341 (962)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~d~---d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~ 341 (962)
|.+++....+. ..++. +..+-++++|-++.-.-.+.-...++.+..-+++.+.+.+-|+
T Consensus 178 P~il~~~~~ll----~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 178 PDILQIFNGLL----SQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred HHHHHHHHhhc----cccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 87777554332 22332 3456677777666554444444444555566677777776665
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=81.40 E-value=7.4 Score=34.07 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=56.7
Q ss_pred hHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-ChhchHHHHHHHHH
Q 002126 458 ETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-FQTNARPLLLFLAA 536 (962)
Q Consensus 458 Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~-~p~~L~~vL~~l~~ 536 (962)
-++|.++.+++..+...-. ..++.|++.+......+..+ ||+.+ |+.+...++.... .-.+++.+++.+++
T Consensus 4 ~ggli~Laa~ai~l~~~~~-~~l~~Il~pVL~~~~D~d~r------VRy~A-cEaL~ni~k~~~~~~l~~f~~IF~~L~k 75 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDIS-KYLDEILPPVLKCFDDQDSR------VRYYA-CEALYNISKVARGEILPYFNEIFDALCK 75 (97)
T ss_pred hHHHHHHHHHHHHchHhHH-HHHHHHHHHHHHHcCCCcHH------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899998888875422 12456666554544554434 68877 5899998887653 22477888888888
Q ss_pred hcccCc--hhHHHHHHHHH
Q 002126 537 GISEAV--SSNACASALRK 553 (962)
Q Consensus 537 ~l~~~~--~~~~Aa~al~~ 553 (962)
.+.+|+ |+..| ..+-+
T Consensus 76 l~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 76 LSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHcCCchhHHHHH-HHHHH
Confidence 888765 55554 44433
No 45
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.47 E-value=45 Score=32.48 Aligned_cols=104 Identities=11% Similarity=0.017 Sum_probs=73.0
Q ss_pred CCCchHHHHHHHHHHHHHhh-hHHHHhhchhchHHHHHHHHHhhccCc-hhHHHHHHHHHHHHHhhhhhhccCCCCCCCC
Q 002126 790 QEPDLVEAYTNFASTFVRTS-RKEVLAASGALLEVSFQKAAICCTAMH-RGAALAAMSYLSCFLEECLASLLGYTTSIPE 867 (962)
Q Consensus 790 ~~pD~~~~~f~l~~~~l~~~-p~~~l~~~~~~l~~~l~~~l~~l~~~e-~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~ 867 (962)
.+|+-.-....++...++.+ |..|......++..++ .-++.++ +.+.++++.-++.++....+ .
T Consensus 37 ~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll----~~L~~~~~~~~~~~ai~~L~~l~~~~~~-----~----- 102 (165)
T PF08167_consen 37 KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALL----SILEKPDPPSVLEAAIITLTRLFDLIRG-----K----- 102 (165)
T ss_pred CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHcCCCCHHHHHHHHHHHHHHHHHhcC-----C-----
Confidence 45777888999999999999 6666555445555443 3455444 44577888888888876543 1
Q ss_pred ccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHH
Q 002126 868 GSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLA 913 (962)
Q Consensus 868 ~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rs~~~~~~~iL~~l~ 913 (962)
.+..+++..++-+.++..++.-+.+ .+..+..-+.|..+.
T Consensus 103 ---p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 103 ---PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLL 142 (165)
T ss_pred ---CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHH
Confidence 1447788888899999998887763 345566667777777
No 46
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=80.30 E-value=59 Score=33.44 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcCCCCccchH-HHHHHHHhhh
Q 002126 698 ENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLF-VTTFERFSQA 776 (962)
Q Consensus 698 ~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~~~~~~l-~~l~~~l~~~ 776 (962)
....|+-.+|.+++..+..++.++.|+++.++..++...... ...+-.-+..++..+-..-.+.+.+ ...+. .
T Consensus 65 ~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~---~- 138 (228)
T PF12348_consen 65 LRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDS--KKFIREAANNALDAIIESCSYSPKILLEILS---Q- 138 (228)
T ss_dssp H---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HHHHHHHH---H-
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH---H-
Confidence 345688999999999999999999998888888887655421 1111112222222222111101111 11111 1
Q ss_pred HHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhh--HHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhh
Q 002126 777 ASVRALNSSYICDQEPDLVEAYTNFASTFVRTSR--KEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEEC 854 (962)
Q Consensus 777 ~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p--~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~ 854 (962)
. .-.-+|.+......++..++.+.| ...+.. ...++.+......++.-.++++-.+|-.-+..+....
T Consensus 139 -----~----~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~-~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 139 -----G----LKSKNPQVREECAEWLAIILEKWGSDSSVLQK-SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -----H----TT-S-HHHHHHHHHHHHHHHTT-----GGG---HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred -----H----HhCCCHHHHHHHHHHHHHHHHHccchHhhhcc-cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 1 114679999999999999999998 222221 1235567777777777777777777777666665543
No 47
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=79.69 E-value=1.4e+02 Score=35.32 Aligned_cols=360 Identities=12% Similarity=0.041 Sum_probs=167.2
Q ss_pred hHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHH-HHHHHHHhcccC--chhHHHHHHHHHHHHH
Q 002126 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARP-LLLFLAAGISEA--VSSNACASALRKICED 557 (962)
Q Consensus 481 ~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~-vL~~l~~~l~~~--~~~~~Aa~al~~lc~~ 557 (962)
+.+...+..+..++.+. ||.+++ ..+.+ .+...|+.++. .++.+...+.++ .+..+|..++..+ +
T Consensus 113 ~~l~~~v~~ll~~~~~~------VRk~A~-~~l~~---i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~ 180 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPY------VRKKAA-LALLK---IYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--K 180 (526)
T ss_dssp HHHHHHHHHHHHSSSHH------HHHHHH-HHHHH---HHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--H
T ss_pred hHHHHHHHHHhcCCchH------HHHHHH-HHHHH---HhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--c
Confidence 45555555555565532 566553 34443 34568888877 688888888764 4788888888888 3
Q ss_pred hhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 002126 558 ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIH 637 (962)
Q Consensus 558 c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~ 637 (962)
|...... ...+.+......+. ...++..+..+++.+..+...-+... .+ ..+++++...++. .
T Consensus 181 ~~~~~~~-~~~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~--~~--~~~i~~l~~~l~s----~------- 243 (526)
T PF01602_consen 181 CNDDSYK-SLIPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDA--DK--NRIIEPLLNLLQS----S------- 243 (526)
T ss_dssp CTHHHHT-THHHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHH--HH--HHHHHHHHHHHHH----H-------
T ss_pred cCcchhh-hhHHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhh--hH--HHHHHHHHHHhhc----c-------
Confidence 3332211 13333333322211 34566777777777776554333222 11 3444444444431 1
Q ss_pred CchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Q 002126 638 NPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSS 717 (962)
Q Consensus 638 ~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l 717 (962)
+++. ...++..+ . .+.+ ..+ ..+.+.+.+..++. .++..+.-.++..+......-
T Consensus 244 ~~~V-------~~e~~~~i---~-~l~~--------~~~---~~~~~~~~L~~lL~---s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 244 SPSV-------VYEAIRLI---I-KLSP--------SPE---LLQKAINPLIKLLS---SSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHH-------HHHHHHHH---H-HHSS--------SHH---HHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHCCHC
T ss_pred ccHH-------HHHHHHHH---H-Hhhc--------chH---HHHhhHHHHHHHhh---cccchhehhHHHHHHHhhccc
Confidence 1111 11122222 1 1121 011 56777777777774 255556666666666554443
Q ss_pred hhhhHhhHHHHHHHHHHhhhhhcCcch----HHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCc
Q 002126 718 GQHFVTLLPQVLDCLSTNFVSFQNHEC----YIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPD 793 (962)
Q Consensus 718 ~~~~~p~l~~~~~~l~~~f~~~~~~~~----~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD 793 (962)
.+.+. .....+..+. .. .... .+.++..+++ ..+ +..++..+... +.. ..++|
T Consensus 299 ~~~v~-~~~~~~~~l~----~~-~d~~Ir~~~l~lL~~l~~----~~n----~~~Il~eL~~~-----l~~----~~d~~ 355 (526)
T PF01602_consen 299 PPAVF-NQSLILFFLL----YD-DDPSIRKKALDLLYKLAN----ESN----VKEILDELLKY-----LSE----LSDPD 355 (526)
T ss_dssp HHHHG-THHHHHHHHH----CS-SSHHHHHHHHHHHHHH------HHH----HHHHHHHHHHH-----HHH----C--HH
T ss_pred chhhh-hhhhhhheec----CC-CChhHHHHHHHHHhhccc----ccc----hhhHHHHHHHH-----HHh----ccchh
Confidence 22211 1111111111 11 1112 1223333322 111 22222222221 111 34677
Q ss_pred hHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHH
Q 002126 794 LVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAM 873 (962)
Q Consensus 794 ~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~ 873 (962)
+..+...-+..+..++|.. .+..++..+.-+..........+...+..++....+ .....
T Consensus 356 ~~~~~i~~I~~la~~~~~~--------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~------------~~~~~ 415 (526)
T PF01602_consen 356 FRRELIKAIGDLAEKFPPD--------AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE------------LREKI 415 (526)
T ss_dssp HHHHHHHHHHHHHHHHGSS--------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT------------THHHH
T ss_pred hhhhHHHHHHHHHhccCch--------HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh------------hhHHH
Confidence 8888888888887777432 222333333344444444455555555555543111 01122
Q ss_pred HHHHH---H-hccHHHHHHHHHHhcCCCcccc-hhhHHHHHHHHHHHhhhhcccchhhccchhHHHHHHHHHHhhhhhh
Q 002126 874 AIQVI---S-HSGEGLVSNVVYALLGVSAMSR-VHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVSLFLIL 947 (962)
Q Consensus 874 ~~~~~---~-~~G~~Lv~~ll~~~~g~~~rs~-~~~~~~iL~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~l~~~~~~ 947 (962)
+..++ . -..+.+...++.-+|.-..... .....++++.+... + ...+...+.++-+++.++-..
T Consensus 416 l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~--------~--~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 416 LKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIEN--------F--IEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHH--------H--TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHh--------h--ccccHHHHHHHHHHHHHHHhh
Confidence 33332 2 2334455555555552222111 11455666666621 1 123457888888888877544
No 48
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.25 E-value=91 Score=36.59 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=30.0
Q ss_pred HHHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhh
Q 002126 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDAS 559 (962)
Q Consensus 511 ~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~ 559 (962)
.+|.+|. +.-|++-..+++.++.-..+.+ ++..|.+.|-.+|.+-.
T Consensus 44 q~I~kff---k~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~ 91 (556)
T PF05918_consen 44 QFIPKFF---KHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP 91 (556)
T ss_dssp HHHHHHH---CC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--
T ss_pred HHHHHHH---hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH
Confidence 6666554 5558888888888888777654 77788888888887643
No 49
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=77.29 E-value=76 Score=36.89 Aligned_cols=164 Identities=10% Similarity=0.082 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCc
Q 002126 415 QFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASR 494 (962)
Q Consensus 415 ~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~ 494 (962)
+-|+..-+++-.+...+|+..+|..+++.+..+ +-|..=..--+++-+||.+-. ...++.++..- ..|
T Consensus 745 eiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvq-----eRq~RvctsvaI~iVae~cgp------fsVlP~lm~dY-~TP 812 (975)
T COG5181 745 EIRRNATETFGCISRAIGPQDVLDILLNNLKVQ-----ERQQRVCTSVAISIVAEYCGP------FSVLPTLMSDY-ETP 812 (975)
T ss_pred HHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHH-----HHHhhhhhhhhhhhhHhhcCc------hhhHHHHHhcc-cCc
Confidence 456666678888888899877777777765321 222223344566677777642 12222222221 122
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHHHh----ChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCCCccH
Q 002126 495 SEELKGFMHIVYRSLADVIGSYSKWISA----FQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNL 568 (962)
Q Consensus 495 ~~~~~~~~~v~~~t~~~~ig~ys~wl~~----~p~~L~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~p~~~ 568 (962)
... | +.. ++.+++.+|+. .-+|.-.+.+.+-.++.+ |.-++.|+.-++.|.-.|.... ..
T Consensus 813 e~n------V-QnG---vLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg----~e 878 (975)
T COG5181 813 EAN------V-QNG---VLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTG----DE 878 (975)
T ss_pred hhH------H-HHh---HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcc----cH
Confidence 211 1 212 33333444432 456888999999999986 4467889999999999998743 44
Q ss_pred HHHHHHHHHHHh--cCCChhhHHHHHHHHHHHhccCCc
Q 002126 569 EILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSN 604 (962)
Q Consensus 569 ~~l~~~~~~l~~--~~l~~~~~~~l~eai~~vi~~lp~ 604 (962)
+....+..-+-. ..-++.....+-||+-.+.+.+.+
T Consensus 879 da~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 879 DAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred HHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 444443332211 122355566666666666555544
No 50
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=76.23 E-value=4.4 Score=30.99 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhHHHHH-hChhchHHHHHHHHHhcccCc--hhHHHHHHHHHH
Q 002126 504 IVYRSLADVIGSYSKWIS-AFQTNARPLLLFLAAGISEAV--SSNACASALRKI 554 (962)
Q Consensus 504 v~~~t~~~~ig~ys~wl~-~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~l 554 (962)
+|..+ +..||+.++--. .-..+++.+++.|+..+.+++ |+..|+.|+.+|
T Consensus 3 vR~~A-~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAA-AWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHH-HHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHH-HHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 56655 489987542111 112378889999999997644 999999998754
No 51
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.86 E-value=1.4e+02 Score=36.25 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=77.0
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccC---CCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCch
Q 002126 529 PLLLFLAAGISEAVSSNACASALRKICEDASALID---EPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNK 605 (962)
Q Consensus 529 ~vL~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~---~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~ 605 (962)
++|-.|++-=+++++...||+|+..+|+-|..... .-..+|.|..-...+ ..+ +..+..++++-.|-+.-|.+
T Consensus 214 p~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I--eyi--DvAEQ~LqALE~iSR~H~~A 289 (1051)
T KOG0168|consen 214 PVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI--EYI--DVAEQSLQALEKISRRHPKA 289 (1051)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhh--hhh--HHHHHHHHHHHHHHhhccHH
Confidence 34444444434577999999999999999986431 112345554332211 122 23344455555554444432
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHH
Q 002126 606 ELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFW 685 (962)
Q Consensus 606 e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~ 685 (962)
--+...|...+ ..+.-+....+. .+ |...+.+-+.+.+ ...|++. +..
T Consensus 290 iL~AG~l~a~L-sylDFFSi~aQR------------------~A---laiaaN~Cksi~s------d~f~~v~----eal 337 (1051)
T KOG0168|consen 290 ILQAGALSAVL-SYLDFFSIHAQR------------------VA---LAIAANCCKSIRS------DEFHFVM----EAL 337 (1051)
T ss_pred HHhcccHHHHH-HHHHHHHHHHHH------------------HH---HHHHHHHHhcCCC------ccchHHH----HHH
Confidence 21122221111 111111110000 00 1111223333332 2235544 458
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Q 002126 686 PMLEKLFRSEHMENGNLSTAACRALSLAIQSSG 718 (962)
Q Consensus 686 ~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~ 718 (962)
|++..++.. .|...+|.+|.|+-+++..+.
T Consensus 338 PlL~~lLs~---~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 338 PLLTPLLSY---QDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHhh---ccchhHHHHHHHHHHHHHhcc
Confidence 999999963 678999999999999988763
No 52
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=75.84 E-value=79 Score=33.91 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=59.1
Q ss_pred chHHHHHHHHHhcccCc-hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCC
Q 002126 526 NARPLLLFLAAGISEAV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (962)
Q Consensus 526 ~L~~vL~~l~~~l~~~~-~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp 603 (962)
..-.+|.-|+.++.+|. ++-.--.++..+|.+|+.... ..+.|.++-.-+.+..++.+++..++.++..++..-.
T Consensus 104 l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~---i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k 179 (378)
T KOG2753|consen 104 LRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEY---IVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNK 179 (378)
T ss_pred cHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeee---ecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc
Confidence 44567788888998877 888889999999999997543 3455566666666778899999999999999987654
No 53
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=75.44 E-value=2.1e+02 Score=35.21 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=84.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHH
Q 002126 674 DDPIFALLRVFWPMLEKLFRSEHMEN--GNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASV 751 (962)
Q Consensus 674 ~~p~~~~~~~i~~~l~~i~~~~~~~~--~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~ 751 (962)
.|++.+....++..+.++.. ++..+ .-++|++|.+++.==......-..+.|.++..+ ..|. ..+....++.-
T Consensus 521 ~~vl~~~~p~ild~L~qlas-~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF-~k~s---~DP~V~~~~qd 595 (1005)
T KOG2274|consen 521 VKVLLSLQPMILDGLLQLAS-KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF-LKYS---EDPQVASLAQD 595 (1005)
T ss_pred ceeccccchHHHHHHHHHcc-cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH-HHhc---CCchHHHHHHH
Confidence 46666666667777777665 33221 234677777766311110000011223333322 2232 33333333333
Q ss_pred HHHHhcCCC-CccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHH
Q 002126 752 VIEEFGHKD-EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAI 830 (962)
Q Consensus 752 lv~~~g~~~-~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~ 830 (962)
++...-+.. .+.+....++..+.+ -++. ++-..++.+..-.+++++.++|+.|.-+-. ......|.-...
T Consensus 596 ~f~el~q~~~~~g~m~e~~iPslis-----il~~-~~~~~~~~l~~~aidvLttvvr~tp~pL~~---~l~~~~FpaVak 666 (1005)
T KOG2274|consen 596 LFEELLQIAANYGPMQERLIPSLIS-----VLQL-NADKAPAGLCAIAIDVLTTVLRNTPSPLPN---LLICYAFPAVAK 666 (1005)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHH-----HHcC-cccccCchhhHHHHHHHHHHHhcCCCCccH---HHHHHHhHHhHh
Confidence 333222211 222333333333322 2222 233445777777888899999997765332 233444443333
Q ss_pred hh-ccCchhHHHHHHHHHHHHHhhhhh
Q 002126 831 CC-TAMHRGAALAAMSYLSCFLEECLA 856 (962)
Q Consensus 831 ~l-~~~e~~~~~a~~~fl~~li~~~~~ 856 (962)
+. -..+......+...+..+|+.+.+
T Consensus 667 ~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 667 ITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred heeecCChHHHHhHHHHHHHHHhcCHH
Confidence 33 345778889999999999988654
No 54
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=72.81 E-value=16 Score=35.63 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=59.9
Q ss_pred HHHhhccCCCCCCcchhHHHHHhHHHHHHHhcC-CCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc
Q 002126 45 ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE-GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV 123 (962)
Q Consensus 45 ~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~-~~~l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~ 123 (962)
...+|+++ +...|+.|+..++.-+... |.-+-... ...-+.|+..+.+ ..++.++.-.|.+++.++-+..
T Consensus 30 i~~LL~s~------~~~~rw~G~~Ll~~~~~~~~~e~l~~~~-~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 30 INSLLQSK------SAYSRWAGLCLLKVTVEQCSWEILLSHG-SQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHhCCC------ChhhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhc
Confidence 45677653 3688999999999999986 76554333 3444447777765 5667888888999999999888
Q ss_pred cCCchHHHHH
Q 002126 124 EHGKPIEKLF 133 (962)
Q Consensus 124 ~W~~~i~~li 133 (962)
+||+..+++.
T Consensus 101 ~~p~l~Rei~ 110 (165)
T PF08167_consen 101 GKPTLTREIA 110 (165)
T ss_pred CCCchHHHHh
Confidence 9999877764
No 55
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=72.76 E-value=4.7 Score=36.41 Aligned_cols=94 Identities=15% Similarity=0.023 Sum_probs=54.8
Q ss_pred CCchhhhHHHHHHHhhhhccccCCCc----cchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhch
Q 002126 452 IPWKEVETKLFALNVVSEVVLQEGQA----FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA 527 (962)
Q Consensus 452 ~~W~~~Ea~Lf~l~~iae~i~~~~~~----~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L 527 (962)
.+|...+.++++++.++...++.... ..++.+.+++. ++..+ ++..+ +.++++.+......++.+
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~~~~~------v~~~a-~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK----SEDEE------VVKAA-LWALRNLAAGPEDNKLIV 87 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh----CCCHH------HHHHH-HHHHHHHccCcHHHHHHH
Confidence 34999999999999998764321100 01233333332 22222 34444 478888775433222222
Q ss_pred H--HHHHHHHHhcccC--chhHHHHHHHHHHHH
Q 002126 528 R--PLLLFLAAGISEA--VSSNACASALRKICE 556 (962)
Q Consensus 528 ~--~vL~~l~~~l~~~--~~~~~Aa~al~~lc~ 556 (962)
. .+++.+.+.+.++ +++..|+.+|.+||+
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 1 2566777766654 488999999998874
No 56
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=72.22 E-value=2.1e+02 Score=33.71 Aligned_cols=130 Identities=12% Similarity=0.052 Sum_probs=78.4
Q ss_pred CchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhc----h-
Q 002126 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTN----A- 527 (962)
Q Consensus 453 ~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~----L- 527 (962)
+=+.++.++.+|..+-+.....+- .+.+...+.....||.+. ||.-+ ++.|+++.+ |++- +
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~------Vr~l~-l~~l~~~~~----~~~~~~~~~~ 116 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPK------VRRLA-LKQLGRIAR----HSEGAAQLLV 116 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHH------HHHHH-HHHHHHHhc----CCHHHHHHhc
Confidence 345678888888877665543221 366777777666677643 45434 477877653 2221 1
Q ss_pred -HHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcc---cCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002126 528 -RPLLLFLAAGISEAV--SSNACASALRKICEDASAL---IDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (962)
Q Consensus 528 -~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~---l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (962)
..++..+..++.+++ ++..|++++.+++.. ... +..+.....|..+.. .-+...|.++++.++.+.+.
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~-----~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMS-----QSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHh-----ccCHHHHHHHHHHHHHHHhc
Confidence 346777888888776 889999999999853 111 111111222222211 12456799999999988655
Q ss_pred C
Q 002126 602 V 602 (962)
Q Consensus 602 l 602 (962)
-
T Consensus 191 S 191 (503)
T PF10508_consen 191 S 191 (503)
T ss_pred C
Confidence 3
No 57
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=67.81 E-value=5.8 Score=30.31 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=34.0
Q ss_pred chhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHh
Q 002126 454 WKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGS 515 (962)
Q Consensus 454 W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ 515 (962)
|...++++++|+.+++...+..... ++.++..|..+..++... ||.++ +..+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~~------VR~~A-~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDDDDS------VRAAA-AWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSHH------HHHHH-HHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCHH------HHHHH-HHHHhc
Confidence 7778999999999887665433211 455555555544544432 66656 488875
No 58
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=66.38 E-value=3e+02 Score=33.26 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=38.8
Q ss_pred HHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHH
Q 002126 508 SLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICED 557 (962)
Q Consensus 508 t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~~~~~Aa~al~~lc~~ 557 (962)
+++.++|+|-.|+.-+---=.+.++.+++.+...+++-+||..+..+..+
T Consensus 212 ~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~ieelR~aac~cilaiVsK 261 (980)
T KOG2021|consen 212 SCLDCIGSFVSWIDINLIANDYFLNLLYKFLNIEELRIAACNCILAIVSK 261 (980)
T ss_pred HHHHHHHHHhhhhhhhhhhchhHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 34699999999998643333456777777777778999999999998865
No 59
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=64.77 E-value=1.3e+02 Score=31.88 Aligned_cols=200 Identities=16% Similarity=0.177 Sum_probs=101.0
Q ss_pred hhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCC
Q 002126 524 QTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVS 603 (962)
Q Consensus 524 p~~L~~vL~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp 603 (962)
.+-....++|+.+.+.+......|.+++..+. .++..- .......+..+.+...-+.....+|..+++=+-.+++.-.
T Consensus 37 ~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~-~~~~~~-~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~ 114 (262)
T PF14500_consen 37 RQEVQVLLDFFCSRLDDHACVQPALKGLLALV-KMKNFS-PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR 114 (262)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH-hCcCCC-hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH
Confidence 34456677888888887666666688888888 444311 1112233333333333345567789999988888876522
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHH
Q 002126 604 NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRV 683 (962)
Q Consensus 604 ~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~ 683 (962)
..+..+-...+..+-++++.. .+|... -.+.+.+..+. +... .....+.
T Consensus 115 ------~~l~~~~~~fv~~~i~~~~gE------kDPRnL----l~~F~l~~~i~---~~~~------------~~~~~e~ 163 (262)
T PF14500_consen 115 ------EALQSMGDDFVYGFIQLIDGE------KDPRNL----LLSFKLLKVIL---QEFD------------ISEFAED 163 (262)
T ss_pred ------HHHHhchhHHHHHHHHHhccC------CCHHHH----HHHHHHHHHHH---Hhcc------------cchhHHH
Confidence 223444445555555555543 233221 11222222222 1111 0123344
Q ss_pred HHHHHHHHHHh---hhccch--HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcC
Q 002126 684 FWPMLEKLFRS---EHMENG--NLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGH 758 (962)
Q Consensus 684 i~~~l~~i~~~---~~~~~~--~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~ 758 (962)
++.++...+.- .-++|+ ...|.+.+.++.++.+-.......+|.+++.+.+.... -....|.++..++..||.
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~--~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPS--VKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHCCH
Confidence 44444444321 122343 23455555566555543222223456666766543221 123367788888999986
No 60
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=64.25 E-value=44 Score=28.06 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=43.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHH
Q 002126 10 AQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILK 71 (962)
Q Consensus 10 ~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~ 71 (962)
...++.|-+++++..|..|-..|.++. ++++-.....+++++ +..+|..|+.+|.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~d~------~~~vr~~a~~aL~ 56 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLKDE------DPMVRRAAARALG 56 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHTSS------SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHcCC------CHHHHHHHHHHHH
Confidence 345556656889999999999999775 678888888888543 4699999999997
No 61
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=59.95 E-value=2.8e+02 Score=30.86 Aligned_cols=124 Identities=10% Similarity=0.145 Sum_probs=67.3
Q ss_pred CchHHHHHHHHHHHHHh-----hhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCC
Q 002126 792 PDLVEAYTNFASTFVRT-----SRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIP 866 (962)
Q Consensus 792 pD~~~~~f~l~~~~l~~-----~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~ 866 (962)
|-.....+.|+..++++ ......-. ...+..++.|.+.. ..++...+-+..++..+++.+... .+..+
T Consensus 225 ~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~-~~~lp~lL~c~~~v--~e~~~~k~~a~e~l~~mv~~~~~~----~~~~~ 297 (373)
T PF14911_consen 225 PPRLASVLAFLQQLLKRLQRQNENQILTLL-RLVLPSLLECLMLV--NEEPQVKKLATELLQYMVESCQVG----SSGEP 297 (373)
T ss_pred CCcHHHHHHHHHHHHHhcCcccchhHHHHH-HHhhHHHHHHHhhc--CCCcchhHHHHHHHHHHHHccccc----CcchH
Confidence 44566677777777776 22221111 13455566655522 337778888999999998876521 11112
Q ss_pred CccHHHHHHHHHHhccHHHH---HHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhcccchhh
Q 002126 867 EGSFNAMAIQVISHSGEGLV---SNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKA 926 (962)
Q Consensus 867 ~~~~~~~~~~~~~~~G~~Lv---~~ll~~~~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~~~ 926 (962)
.++....++++++.|+..-. ..++..++--.| +.+..++-.+-+.....||-+..|
T Consensus 298 ~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p----~lV~~Lip~i~q~l~~~E~kRG~G 356 (373)
T PF14911_consen 298 REQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDP----QLVISLIPTIRQSLKDSERKRGLG 356 (373)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 23456778888877776444 444444553344 333333333333334455555555
No 62
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=59.46 E-value=3.9e+02 Score=32.26 Aligned_cols=136 Identities=17% Similarity=0.149 Sum_probs=81.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCcH----HHHHHHHHhhh----cCCCCCCCchhhhHHHHHHHhhhhccccCCCccch
Q 002126 409 LPDGLVQFRMNLVELLVDICQLLRSA----TFIQKVFFGSW----GSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDF 480 (962)
Q Consensus 409 ~~d~f~~fR~~~~d~l~~~~~il~~~----~~l~~~~~~l~----~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l 480 (962)
-.||=+.||+-+.++...+...+|.. ..-.++++.+. .+. .+.-..|-+++.+...+.....+ .+
T Consensus 725 lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt------t~d~vml~gfg~V~~~lg~r~kp-yl 797 (1172)
T KOG0213|consen 725 LKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT------TEDSVMLLGFGTVVNALGGRVKP-YL 797 (1172)
T ss_pred hccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc------cchhhhhhhHHHHHHHHhhcccc-ch
Confidence 34556689999999999999988852 12233344322 211 11125566777776655432232 25
Q ss_pred hHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh--chHHHHHHHHHhccc--CchhHHHHHHHHHHHH
Q 002126 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT--NARPLLLFLAAGISE--AVSSNACASALRKICE 556 (962)
Q Consensus 481 ~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~--~L~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~ 556 (962)
|+|..-+....++++.. +|..++ .++++.+.-++...+ .+...=..|.+.++. |++-..--.|++.|+.
T Consensus 798 pqi~stiL~rLnnksa~------vRqqaa-dlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~n 870 (1172)
T KOG0213|consen 798 PQICSTILWRLNNKSAK------VRQQAA-DLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVN 870 (1172)
T ss_pred HHHHHHHHHHhcCCChh------HHHHHH-HHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 66666444444454422 567675 999999998887543 344444445677764 7777677777777776
Q ss_pred Hh
Q 002126 557 DA 558 (962)
Q Consensus 557 ~c 558 (962)
.-
T Consensus 871 vi 872 (1172)
T KOG0213|consen 871 VI 872 (1172)
T ss_pred hc
Confidence 54
No 63
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=58.35 E-value=3.7e+02 Score=31.64 Aligned_cols=256 Identities=12% Similarity=0.078 Sum_probs=128.3
Q ss_pred HHHHHHHHhcCcH--HHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhh
Q 002126 422 ELLVDICQLLRSA--TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELK 499 (962)
Q Consensus 422 d~l~~~~~il~~~--~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~ 499 (962)
=.+...+..+|+. .++..++-.+.... .+..=.-.+|+-++..++..+++...-. ..++.++..+... +=+.
T Consensus 197 ~a~~~~~~~Lg~~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK---~llpsll~~l~~~-kWrt- 270 (569)
T KOG1242|consen 197 LAFEAAQGNLGPPFEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVK---LLLPSLLGSLLEA-KWRT- 270 (569)
T ss_pred HHHHHHHHhcCCCCCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhh---HhhhhhHHHHHHH-hhhh-
Confidence 3445555667763 24444443332211 1112234588999999988887753321 2234445444332 1010
Q ss_pred hHHHHHHHHHHHHHHhhHHHHH-hChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHH
Q 002126 500 GFMHIVYRSLADVIGSYSKWIS-AFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGE 576 (962)
Q Consensus 500 ~~~~v~~~t~~~~ig~ys~wl~-~~p~~L~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~ 576 (962)
...+ +.++|...+--. .+..+++.+++-+.+.|.+ |+++.++-.++.++|+--+..... .+.|.|.+.+.
T Consensus 271 -----K~as-lellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-~~ip~Lld~l~ 343 (569)
T KOG1242|consen 271 -----KMAS-LELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-KIIPTLLDALA 343 (569)
T ss_pred -----HHHH-HHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-HHHHHHHHHhc
Confidence 1122 477776654211 1334667777777788875 779999999999999765432110 13333333322
Q ss_pred HHHhcCCChhhHHHHHHHHHH--HhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHH
Q 002126 577 ALEKRHLPLEDEEEVVGAISL--ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLY 654 (962)
Q Consensus 577 ~l~~~~l~~~~~~~l~eai~~--vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 654 (962)
.+.- .-...+.+++. .+..+..+. + .++-|++.+ -++.... ... ...+..++
T Consensus 344 ---dp~~---~~~e~~~~L~~ttFV~~V~~ps-----L-almvpiL~R---~l~eRst--------~~k---r~t~~Iid 397 (569)
T KOG1242|consen 344 ---DPSC---YTPECLDSLGATTFVAEVDAPS-----L-ALMVPILKR---GLAERST--------SIK---RKTAIIID 397 (569)
T ss_pred ---Cccc---chHHHHHhhcceeeeeeecchh-----H-HHHHHHHHH---HHhhccc--------hhh---hhHHHHHH
Confidence 1110 11222222222 122222211 2 445555543 2221111 000 11223334
Q ss_pred hhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHh-hHHHHHH
Q 002126 655 RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVT-LLPQVLD 730 (962)
Q Consensus 655 ~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p-~l~~~~~ 730 (962)
.+.... . .+.-+.+++.+++|-++..+. -+ .+++.+.+-+.+...++-+|....+ .+|.+.+
T Consensus 398 Nm~~Lv---e--------Dp~~lapfl~~Llp~lk~~~~--d~-~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e 460 (569)
T KOG1242|consen 398 NMCKLV---E--------DPKDLAPFLPSLLPGLKENLD--DA-VPEVRAVAARALGALLERLGEVSFDDLIPELSE 460 (569)
T ss_pred HHHHhh---c--------CHHHHhhhHHHHhhHHHHHhc--CC-ChhHHHHHHHHHHHHHHHHHhhcccccccHHHH
Confidence 333211 1 112255688899999999885 34 8899888888887777777665433 3344443
No 64
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=56.70 E-value=7.3e+02 Score=34.56 Aligned_cols=506 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCC----------------------ChHHHHHHHHHHHHhh-cChHHHH---------HHHHhhccC
Q 002126 5 LQIKVAQAVHVLNHDT----------------------ESCNRVAANQWLVQFQ-QTDAAWE---------IATSILTSD 52 (962)
Q Consensus 5 ~~~~v~~ai~~ly~~~----------------------d~~~~~~A~~~L~~~Q-~s~~aW~---------~~~~LL~~~ 52 (962)
.++.|..|+..+|+++ +.+.+.+|=.-|..+- .+++.|+ .-.++|.++
T Consensus 379 vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~ 458 (2102)
T PLN03200 379 VQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS 458 (2102)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC
Q ss_pred CCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHHHHHH-HHHHHHH-hcCCCHHHHHHHHHHHHHHHhhhccCCchHH
Q 002126 53 RQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNA-LLVAAKR-FSSGPPQLLTQICLALSALILRAVEHGKPIE 130 (962)
Q Consensus 53 ~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr~~-Ll~~l~~-~~~~~~~v~~kL~~aLa~l~~~~~~W~~~i~ 130 (962)
+ .++|..|+.++++--. -+++++..+.+. .+..|.+ ...+...++..-+-+|+.++. .++-+.
T Consensus 459 s------~~iQ~~A~~~L~nLa~-----~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~----~~~qir 523 (2102)
T PLN03200 459 S------EQQQEYAVALLAILTD-----EVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCC----HSEDIR 523 (2102)
T ss_pred C------HHHHHHHHHHHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC----CcHHHH
Q ss_pred HHHHHhhcccCCCcchHHHHHHHhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchh
Q 002126 131 KLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLH 210 (962)
Q Consensus 131 ~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~ 210 (962)
.++..-+- .+.++++|+.=..+. ...--..+..-+...-..++.-+...+.. ++.
T Consensus 524 ~iV~~aGA-------IppLV~LL~sgd~~~----------q~~Aa~AL~nLi~~~d~~~I~~Lv~LLls--------dd~ 578 (2102)
T PLN03200 524 ACVESAGA-------VPALLWLLKNGGPKG----------QEIAAKTLTKLVRTADAATISQLTALLLG--------DLP 578 (2102)
T ss_pred HHHHHCCC-------HHHHHHHHhCCCHHH----------HHHHHHHHHHHHhccchhHHHHHHHHhcC--------CCh
Q ss_pred hhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCChhHHHH-----hhhhh
Q 002126 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALL-----CRVPF 283 (962)
Q Consensus 211 ~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eil~~~~~~~~~l~-----~~~~~ 283 (962)
+....+++.+..-+..+....+-........-++.+.+.|.++ +..+.|+.+|..+.....+..+.++ |.++.
T Consensus 579 ~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~ 658 (2102)
T PLN03200 579 ESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIK 658 (2102)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHH
Q ss_pred hHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhh
Q 002126 284 LKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILG 363 (962)
Q Consensus 284 l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~ 363 (962)
+.. ..-.+--.+.+..+..++...-+.....+++ ...+..|+.+...+ |.++.+.++.--..+..+
T Consensus 659 LLs----s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~-----~GaV~pL~~LL~~~--d~~v~e~Al~ALanLl~~--- 724 (2102)
T PLN03200 659 LLT----NNTEAVATQSARALAALSRSIKENRKVSYAA-----EDAIKPLIKLAKSS--SIEVAEQAVCALANLLSD--- 724 (2102)
T ss_pred HHh----cCChHHHHHHHHHHHHHHhCCCHHHHHHHHH-----cCCHHHHHHHHhCC--ChHHHHHHHHHHHHHHcC---
Q ss_pred cchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHh
Q 002126 364 LDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG 443 (962)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~ 443 (962)
......-...-..+.+.+++ ++.=.+-|+..+-.+...|.--..+..+......
T Consensus 725 ----~e~~~ei~~~~~I~~Lv~lL----------------------r~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~ 778 (2102)
T PLN03200 725 ----PEVAAEALAEDIILPLTRVL----------------------REGTLEGKRNAARALAQLLKHFPVDDVLKDSVQC 778 (2102)
T ss_pred ----chHHHHHHhcCcHHHHHHHH----------------------HhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Q ss_pred hhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHH--HH
Q 002126 444 SWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKW--IS 521 (962)
Q Consensus 444 l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~w--l~ 521 (962)
.+++-.+.+.....+... ..+.+.+..+...-..+. ..=-+|..| |.
T Consensus 779 -----------------~g~v~~l~~~L~~~~~~~--~~~~~al~~l~~l~~~~~------------~~~~~~~~~~~~~ 827 (2102)
T PLN03200 779 -----------------RGTVLALVDLLNSTDLDS--SATSEALEALALLARTKG------------GANFSHPPWAVLA 827 (2102)
T ss_pred -----------------hCcHHHHHHHHhcCCcch--hhHHHHHHHHHHHHhhcc------------cCCCCCCchhhHH
Q ss_pred hChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002126 522 AFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (962)
Q Consensus 522 ~~p~~L~~vL~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (962)
..|.-|.+.+..+ .-++|.++..|...+.++|++=...+.. .+..-..++..+.+..+...+.+-=+.|.+.+|.+
T Consensus 828 e~p~~l~~l~~~l--~~~~p~~~~kai~il~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (2102)
T PLN03200 828 EVPSSLEPLVRCL--AEGHPLVQDKAIEILSRLCRDQPVVLGD--LIANASKCISSLADRIINSSSLEVKIGGTALLICA 903 (2102)
T ss_pred hccCchHHHHHHH--HcCChHHHHHHHHHHHHHhccChhHHHH--HHhcccchHHHHHHHHhhcCCceEEecchhhhhhh
Q ss_pred CCchHHH-------HHHHHHHHHHHHHHHHh
Q 002126 602 VSNKELK-------NNLLARLLSSSYEAIGK 625 (962)
Q Consensus 602 lp~~e~~-------~~~l~~ll~p~~~~l~~ 625 (962)
.....+. ..++..++..++.-+++
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (2102)
T PLN03200 904 AKEHRQLVMEALDESGYLKLLIQALVDMLKQ 934 (2102)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhc
No 65
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.13 E-value=4.5e+02 Score=31.67 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcc
Q 002126 518 KWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASAL 561 (962)
Q Consensus 518 ~wl~~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~ 561 (962)
.-|-+.|+-|.++++-|.+.|.+|+ ++++|..-|=.|++...+.
T Consensus 170 kvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 170 KVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 3455679999999999999999865 7777766555555554443
No 66
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=55.07 E-value=32 Score=28.93 Aligned_cols=57 Identities=26% Similarity=0.170 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHH
Q 002126 8 KVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQIL 70 (962)
Q Consensus 8 ~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL 70 (962)
++...+..+..++|+..|.+|-..|.++. +++++.....++..++ +..+|.-|+..|
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~-----~~~vr~~a~~aL 87 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDD-----DEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-S-----SHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCC-----cHHHHHHHHhhc
Confidence 44555555557889999999999999996 6999999999997754 356788887765
No 67
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.54 E-value=4e+02 Score=30.97 Aligned_cols=233 Identities=13% Similarity=0.163 Sum_probs=110.5
Q ss_pred hhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhch-----HHH
Q 002126 456 EVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA-----RPL 530 (962)
Q Consensus 456 ~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L-----~~v 530 (962)
++|| -|++..||.+-.+......-...+.++-.+...|+.. |+-.++ +.+|..+. ..|.+= ..+
T Consensus 127 q~eA-AWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~------v~eQav-WALgNIag---ds~~~Rd~vl~~g~ 195 (514)
T KOG0166|consen 127 QFEA-AWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSAD------VREQAV-WALGNIAG---DSPDCRDYVLSCGA 195 (514)
T ss_pred HHHH-HHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHH------HHHHHH-HHHhcccc---CChHHHHHHHhhcc
Confidence 5565 5788888766543222110000111233333444422 344453 66666543 333211 123
Q ss_pred HHHHHHhcccCc---hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHhccCCch
Q 002126 531 LLFLAAGISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSNK 605 (962)
Q Consensus 531 L~~l~~~l~~~~---~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~vi~~lp~~ 605 (962)
+.-|+..+..+. ..+.+..++.+||+.+.+ ++.++.+..+...+.. ...|.+.....+=+++++...-+ +
T Consensus 196 l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P----~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n-e 270 (514)
T KOG0166|consen 196 LDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP----SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN-E 270 (514)
T ss_pred hHHHHHHhccccchHHHHHHHHHHHHHHcCCCC----CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-H
Confidence 444444444433 567899999999987652 2244444444443321 33466667777778888764433 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHH
Q 002126 606 ELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFW 685 (962)
Q Consensus 606 e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~ 685 (962)
. .... +-..++.++..++.....+ .+ .-.|..++.|.-+-.. .--.-+-...+
T Consensus 271 ~-iq~v---i~~gvv~~LV~lL~~~~~~-v~-------------~PaLRaiGNIvtG~d~---------QTq~vi~~~~L 323 (514)
T KOG0166|consen 271 K-IQMV---IDAGVVPRLVDLLGHSSPK-VV-------------TPALRAIGNIVTGSDE---------QTQVVINSGAL 323 (514)
T ss_pred H-HHHH---HHccchHHHHHHHcCCCcc-cc-------------cHHHhhccceeeccHH---------HHHHHHhcChH
Confidence 2 2221 2224455556666543210 00 1134444443332110 00011124567
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhh-----HhhHHHHHHHHH
Q 002126 686 PMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-----VTLLPQVLDCLS 733 (962)
Q Consensus 686 ~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~-----~p~l~~~~~~l~ 733 (962)
|.+..++. ..+. ..+...+|-.+..+..--..+. ..++|.++..+.
T Consensus 324 ~~l~~ll~-~s~~-~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~ 374 (514)
T KOG0166|consen 324 PVLSNLLS-SSPK-ESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ 374 (514)
T ss_pred HHHHHHhc-cCcc-hhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh
Confidence 77777775 2222 2366667777776544222222 245666666554
No 68
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=54.51 E-value=1.1e+02 Score=27.24 Aligned_cols=75 Identities=9% Similarity=0.096 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Q 002126 543 SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEA 622 (962)
Q Consensus 543 ~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~ 622 (962)
-+..|-+++..+.+-|++.+.. +.+.+..+.+..... ++-+...+++-...+..+++++ ....++++...+++.
T Consensus 31 ek~~~l~si~~lI~~~~~~i~~--~~pQI~a~L~sal~~---~~l~~~al~~W~~fi~~L~~~~-l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 31 EKKRALRSIEELIKLGGSHISS--ARPQIMACLQSALEI---PELREEALSCWNCFIKTLDEED-LGPLLDQIFAILLPL 104 (107)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHh
Confidence 5788999999999999988743 777777766543211 2556777899999999999866 566666666555544
Q ss_pred H
Q 002126 623 I 623 (962)
Q Consensus 623 l 623 (962)
|
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 3
No 69
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.49 E-value=5e+02 Score=32.01 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=103.1
Q ss_pred HHHHhhHHHHHh--Chh--chHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCC
Q 002126 511 DVIGSYSKWISA--FQT--NARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLP 584 (962)
Q Consensus 511 ~~ig~ys~wl~~--~p~--~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~ 584 (962)
+-+....+|+++ +.. ....++..++..+.+.+ +-..|-+++..+|+--.. ..++.+...|.+- +....
T Consensus 746 ~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----~il~dL~e~Y~s~-k~k~~ 819 (982)
T KOG4653|consen 746 YGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----DILPDLSEEYLSE-KKKLQ 819 (982)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----hhHHHHHHHHHhc-ccCCC
Confidence 344556778874 222 55688888888888754 778888999999986333 2466677766652 23334
Q ss_pred hhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhccccc
Q 002126 585 LEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLP 664 (962)
Q Consensus 585 ~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~ 664 (962)
.+.+.+|=|+++.++++..+ ......++++...-..+... + ..+. .+.+..+..|.-+.+...
T Consensus 820 ~d~~lkVGEai~k~~qa~Ge------l~~~y~~~Li~tfl~gvrep-d-------~~~R---aSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 820 TDYRLKVGEAILKVAQALGE------LVFKYKAVLINTFLSGVREP-D-------HEFR---ASSLANLGQLCQLLAFQV 882 (982)
T ss_pred ccceehHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHhcCCc-h-------HHHH---HhHHHHHHHHHHHHhhhh
Confidence 68899999999999987543 33344445555444433311 1 1110 012233333332222211
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHH
Q 002126 665 VPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLP 726 (962)
Q Consensus 665 ~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~ 726 (962)
+ + .+-++..-+..+. +-.+..-+..++..+++..+...|.++.|++.
T Consensus 883 s---------d----~~~ev~~~Il~l~--~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 883 S---------D----FFHEVLQLILSLE--TTDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred h---------H----HHHHHHHHHHHHH--ccCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 1 1 2222233333332 23455667788999999999999988777654
No 70
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.17 E-value=3.3e+02 Score=29.82 Aligned_cols=146 Identities=15% Similarity=0.136 Sum_probs=80.9
Q ss_pred CCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHH
Q 002126 450 VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARP 529 (962)
Q Consensus 450 ~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~ 529 (962)
.+.+-++.|.++.-|....+.++.-.+-..+.....++. ..+++... +|..+ +++||... ..||..-..
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~------lR~~A-a~Vigt~~---qNNP~~Qe~ 161 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAE------LRELA-ARVIGTAV---QNNPKSQEQ 161 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHH------HHHHH-HHHHHHHH---hcCHHHHHH
Confidence 457899999999999999998863222001122333444 34444322 56656 48999765 678864433
Q ss_pred H-----HHHHHHhccc--Cc-hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002126 530 L-----LLFLAAGISE--AV-SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (962)
Q Consensus 530 v-----L~~l~~~l~~--~~-~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (962)
+ +..|+..+.. |. ++..|-.|+..+.+.-..-...-.-++.+.-+...+.+...+...+.+++.=++.+++.
T Consensus 162 v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 162 VIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 3 4444555542 22 44555555555544322110000001122333344444556777888999999999988
Q ss_pred CCchH
Q 002126 602 VSNKE 606 (962)
Q Consensus 602 lp~~e 606 (962)
.+.++
T Consensus 242 ~~s~~ 246 (342)
T KOG2160|consen 242 DKSDE 246 (342)
T ss_pred hhhhh
Confidence 77765
No 71
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.56 E-value=4.2e+02 Score=30.87 Aligned_cols=222 Identities=12% Similarity=-0.002 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHh--hhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcC
Q 002126 682 RVFWPMLEKLFRSEHMEN-GNLSTAACRALSLAIQS--SGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGH 758 (962)
Q Consensus 682 ~~i~~~l~~i~~~~~~~~-~~v~e~~c~~~~~~~~~--l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~ 758 (962)
..++..+..+++ +...+ .+..+++.+++..=++. +.++..--.-+++..+........-|-....+.+.+...+.+
T Consensus 152 ~~~L~~l~~lLe-~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~ 230 (559)
T KOG2081|consen 152 SKVLVFLSDLLE-RSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLD 230 (559)
T ss_pred HHHHHHHHHHHh-hcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhh
Confidence 445556666665 44444 56666666666665552 222110000022222222221111122334455555555544
Q ss_pred CCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchh
Q 002126 759 KDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRG 838 (962)
Q Consensus 759 ~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~ 838 (962)
.++..+.-..++... .. +...-......+++|....+-+++..+.+.+-..+...+. .+-.+++..+..-..++.+
T Consensus 231 ~~~~~~~~~~l~~~v--~~-L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~-~~l~~vellLl~~~h~~~e 306 (559)
T KOG2081|consen 231 RSEGLPLAAILFIGV--II-LETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPE-EFLRIVELLLLVAGHNDTE 306 (559)
T ss_pred hhccCchhHHHhccc--cc-cchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCC-cchhHHHHHHHhccCCchh
Confidence 333222111111100 00 1101011133678999999999999888888777776653 3444666666667788999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccch-----------hhHHH
Q 002126 839 AALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRV-----------HKCAT 907 (962)
Q Consensus 839 ~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rs~~-----------~~~~~ 907 (962)
++.+++.||..+-..-.. .+ ......+++.|...+|+.+..-+.=..-+-.+ -..+|
T Consensus 307 vie~SF~fW~~lse~l~~-----~~-------~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~d 374 (559)
T KOG2081|consen 307 VIEASFNFWYSLSEELTL-----TD-------DDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGD 374 (559)
T ss_pred hhhhhHHhhhhhHHHHhc-----cc-------cHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHH
Confidence 999999999887755332 11 13455678889999999999887521101111 16788
Q ss_pred HHHHHHHHhhhhc
Q 002126 908 ILQQLAAICSISE 920 (962)
Q Consensus 908 iL~~l~~~~~~~~ 920 (962)
+|+.++.+|-..|
T Consensus 375 vl~Dv~~iigs~e 387 (559)
T KOG2081|consen 375 VLKDVAFIIGSDE 387 (559)
T ss_pred HHHHHHHHhCcHH
Confidence 8988886654443
No 72
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=50.47 E-value=3.9e+02 Score=31.20 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCCh
Q 002126 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQF-QQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (962)
Q Consensus 5 ~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~-Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~ 83 (962)
..+++.+++++|...+....|=.|-..|+++ ++.|+-...|..=+.+--. ..+..+-.||-.||-.. -++
T Consensus 300 ~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIs--d~Nr~IstyAITtLLKT-------Gt~ 370 (898)
T COG5240 300 FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLIS--DENRTISTYAITTLLKT-------GTE 370 (898)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhh--cccccchHHHHHHHHHc-------Cch
Confidence 4456677777777777777788888888874 5567766555432221000 12456778887777422 234
Q ss_pred HHHHHHHHHHHHHHH
Q 002126 84 AAKDALLNALLVAAK 98 (962)
Q Consensus 84 e~~~~Lr~~Ll~~l~ 98 (962)
+....|-+.+-..+.
T Consensus 371 e~idrLv~~I~sfvh 385 (898)
T COG5240 371 ETIDRLVNLIPSFVH 385 (898)
T ss_pred hhHHHHHHHHHHHHH
Confidence 455444444444433
No 73
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.32 E-value=4.8e+02 Score=30.30 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=35.1
Q ss_pred CCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhc
Q 002126 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT 833 (962)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~ 833 (962)
-..|.+.-++|+++.-+..+.|..+-..+......+.+|.--+++
T Consensus 568 Lk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMT 612 (748)
T KOG4541|consen 568 LKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMT 612 (748)
T ss_pred HhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCc
Confidence 467999999999999999999999877654555556666655565
No 74
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=45.71 E-value=2.1e+02 Score=25.62 Aligned_cols=90 Identities=10% Similarity=0.086 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcccCc------hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002126 528 RPLLLFLAAGISEAV------SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (962)
Q Consensus 528 ~~vL~~l~~~l~~~~------~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (962)
-.+++.+...+++++ -+.+|-+|+..+.+-|++++. .+.|.+..+.+.-.. .++-+..-+++-...+..
T Consensus 10 LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~--~a~pQI~acL~saL~---~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 10 LGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS--SALPQIMACLQSALE---IPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHHh
Confidence 345566666666543 378899999999999988774 377777766653211 234577788899999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 002126 602 VSNKELKNNLLARLLSSSYEAI 623 (962)
Q Consensus 602 lp~~e~~~~~l~~ll~p~~~~l 623 (962)
++.++ ....+++.+.-+++.|
T Consensus 85 L~~~~-l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 85 LKEEE-LGPLLDQIFAAILPLW 105 (107)
T ss_pred CCHHH-HHHHHHHHHHHHHHhc
Confidence 99866 5666666665555443
No 75
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=39.77 E-value=6.2e+02 Score=28.82 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHH
Q 002126 796 EAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLS 848 (962)
Q Consensus 796 ~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~ 848 (962)
--|++.+..++...|..-+. .....+|.....++..+|..++..|+.||.
T Consensus 273 v~FL~el~~il~~~~~~~f~---~i~~~lf~~la~ci~S~h~qVAErAl~~w~ 322 (409)
T PF01603_consen 273 VLFLNELEEILEVLPPEEFQ---KIMVPLFKRLAKCISSPHFQVAERALYFWN 322 (409)
T ss_dssp HHHHHHHHHHHTT--HHHHH---HHHHHHHHHHHHHHTSSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcCHHHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 33666666777665443332 345667888888888888888888888874
No 76
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.96 E-value=7.8e+02 Score=29.79 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=104.6
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc-cCCchHHHHHHHhhcccCCCcchHHHHHHHhhccccc
Q 002126 82 QSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEV 160 (962)
Q Consensus 82 ~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~-~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~ 160 (962)
+++-...|-+-++.++.. .-++||.|-...|=-++++++ .-...++-+.+.+... ++....+... +++|=.
T Consensus 138 TpdLARDLa~Dv~tLL~s---skpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDp--Dp~V~SAAV~---VICELA 209 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNS---SKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDP--DPSVVSAAVS---VICELA 209 (877)
T ss_pred CchhhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCC--CchHHHHHHH---HHHHHH
Confidence 345555666666666542 346888888877877888876 2344556666666431 2322222222 333322
Q ss_pred ccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhc
Q 002126 161 IDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAH 240 (962)
Q Consensus 161 ~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~ 240 (962)
..+ +. ....-+|..+.++.+.-.+ =+..+.++-|.+-..+.+. . --
T Consensus 210 rKn-------Pk--------nyL~LAP~ffkllttSsNN-----------WmLIKiiKLF~aLtplEPR------L--gK 255 (877)
T KOG1059|consen 210 RKN-------PQ--------NYLQLAPLFYKLLVTSSNN-----------WVLIKLLKLFAALTPLEPR------L--GK 255 (877)
T ss_pred hhC-------Cc--------ccccccHHHHHHHhccCCC-----------eehHHHHHHHhhccccCch------h--hh
Confidence 110 10 1122456666766543111 1667888888877765431 1 11
Q ss_pred chHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-----ChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhh
Q 002126 241 PLLNFVFNSLQVQSSFDVAIEVLVELVGRHE-----GLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAA 315 (962)
Q Consensus 241 ~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~-----~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~ 315 (962)
.+++.+.+.+.+...-...-||+..++...+ +-...+---+-.++. .+.+.|.. .+-++-+. .
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~-----fiedsDqN-LKYlgLla------m 323 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRI-----FIEDSDQN-LKYLGLLA------M 323 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhh-----hhhcCCcc-HHHHHHHH------H
Confidence 2344444443332222233355555444321 111111100101111 12233322 22222111 1
Q ss_pred hHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHH
Q 002126 316 PSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358 (962)
Q Consensus 316 ~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~ 358 (962)
...+..||.-.++--+++++|.... |..|.-.+++-.|.+.
T Consensus 324 ~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 324 SKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMV 364 (877)
T ss_pred HHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence 1222234444556678999998875 6677777887666543
No 77
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=37.80 E-value=6.7e+02 Score=28.67 Aligned_cols=200 Identities=19% Similarity=0.213 Sum_probs=103.3
Q ss_pred hHHHHHHHHhccC-chhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccC---chhHHHHHHHHHHHH
Q 002126 481 SVIMQLVAVLSAS-RSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA---VSSNACASALRKICE 556 (962)
Q Consensus 481 ~~i~~~l~~l~~~-~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~---~~~~~Aa~al~~lc~ 556 (962)
+.+-+++..+..+ +....+.-..-.. . |..-|+++-|= +|...+|..+++-+++. ..+..|-+.++++|+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~-~-m~~e~sfsvWe----q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~ 359 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELP-K-MLCEGSFSVWE----QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLT 359 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHH-H-HHHccchhHHH----HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH
Confidence 4566677777665 2222111011011 1 24556666664 35556666777777762 255666666777776
Q ss_pred HhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHH-HHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 002126 557 DASALIDEPSNLEILMWIGEALEKRHLPLEDEEEV-VGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSL 635 (962)
Q Consensus 557 ~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l-~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~ 635 (962)
.=...|.. +..-.+..+.+. ..-+.+.-.++ -|....+++...+..++. .+.|++.. +.
T Consensus 360 ~Q~~~l~D-stE~ai~K~Lea---a~ds~~~v~~~Aeed~~~~las~~P~~~I~-----~i~~~Ilt-------~D---- 419 (516)
T KOG2956|consen 360 NQPARLFD-STEIAICKVLEA---AKDSQDEVMRVAEEDCLTTLASHLPLQCIV-----NISPLILT-------AD---- 419 (516)
T ss_pred hchHhhhc-hHHHHHHHHHHH---HhCCchhHHHHHHHHHHHHHHhhCchhHHH-----HHhhHHhc-------Cc----
Confidence 54444432 122233333332 22222222222 334444444433323221 22233321 10
Q ss_pred CCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 002126 636 IHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQ 715 (962)
Q Consensus 636 ~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~ 715 (962)
++ ..+.++.++..+|..+.. +-...++..+.|.+-+-+.. .+..|...+.-|+-.++.
T Consensus 420 --~~--------~~~~~iKm~Tkl~e~l~~---------EeL~~ll~diaP~~iqay~S---~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 420 --EP--------RAVAVIKMLTKLFERLSA---------EELLNLLPDIAPCVIQAYDS---TSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred --ch--------HHHHHHHHHHHHHhhcCH---------HHHHHhhhhhhhHHHHHhcC---chHHhhhhHHHhHHHHHH
Confidence 11 234567778888877653 23455667778877776642 456777788888888888
Q ss_pred hhh-hhhHhhHHHH
Q 002126 716 SSG-QHFVTLLPQV 728 (962)
Q Consensus 716 ~l~-~~~~p~l~~~ 728 (962)
-+| ..+.|.|.++
T Consensus 478 ~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 478 RVGMEEMEPHLEQL 491 (516)
T ss_pred HHhHHhhhhHhhhc
Confidence 888 6677776543
No 78
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=37.57 E-value=2.2e+02 Score=27.81 Aligned_cols=106 Identities=10% Similarity=0.042 Sum_probs=66.4
Q ss_pred CCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccH
Q 002126 791 EPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSF 870 (962)
Q Consensus 791 ~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~ 870 (962)
==|+.+..|++++.++..|+..+- +..+++....|+.- |.++.--+...+..++.....
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~------~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~-------------- 98 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRID------ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPE-------------- 98 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HH--------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHH--------------
Confidence 357899999999999997765432 34567888889876 899988888888888765322
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhh
Q 002126 871 NAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSIS 919 (962)
Q Consensus 871 ~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rs~~~~~~~iL~~l~~~~~~~ 919 (962)
.+.+-+...-+.+-..+-.-+...+...++|..-|..+...-++..+
T Consensus 99 --~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 99 --EVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp --HHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 12222333333333444444666777888888888877777443333
No 79
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=37.28 E-value=81 Score=31.09 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=38.8
Q ss_pred HHHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHH
Q 002126 511 DVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED 557 (962)
Q Consensus 511 ~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~ 557 (962)
+++..+++...++|..+.+.++.++.+|.+++ ++..|...+.++...
T Consensus 7 n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 7 NAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 45555667778999999999999999999864 889988888888754
No 80
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=35.75 E-value=4e+02 Score=29.83 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcc------hHHHHHHHHHHHhcCC-CC--ccchHHHHHHHHh
Q 002126 704 TAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHE------CYIRTASVVIEEFGHK-DE--YGPLFVTTFERFS 774 (962)
Q Consensus 704 e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~------~~L~l~~~lv~~~g~~-~~--~~~~l~~l~~~l~ 774 (962)
.++|.++|...+..+..+.+.+...++.+++.|... |.. +.+++.+.+...-... .+ -.+.+.++..-+.
T Consensus 229 ~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~-~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~ 307 (370)
T PF08506_consen 229 RAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN-PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFS 307 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC-CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHH
Confidence 456666666666666666667767777777777654 432 2456665554322110 01 1122223333334
Q ss_pred hhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhH
Q 002126 775 QAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGA 839 (962)
Q Consensus 775 ~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~ 839 (962)
+.. ++.|+ ++...+|=+..+.+.++..+-..-|. ..+..+++..+..|..++.-+
T Consensus 308 ~~v-~peL~--~~~~~~piLka~aik~~~~Fr~~l~~-------~~l~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 308 QHV-LPELQ--PDVNSHPILKADAIKFLYTFRNQLPK-------EQLLQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp HHT-CHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H-------HHHHHHHHHHHHHTTSS-HHH
T ss_pred HHh-HHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHhCCCCcch
Confidence 544 56666 24567887888888888776665443 345567777777887665443
No 81
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=35.25 E-value=3.2e+02 Score=24.28 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHHHHh
Q 002126 680 LLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ-HFVTLLPQVLDCLSTN 735 (962)
Q Consensus 680 ~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~-~~~p~l~~~~~~l~~~ 735 (962)
..-|++-.+...++ .+++.+.+++++...++.+.. +..|++++++-.+...
T Consensus 53 ~~pQI~a~L~sal~-----~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 53 ARPQIMACLQSALE-----IPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred HHHHHHHHHHHHhC-----ChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 44455666665553 458999999999999999865 6788888777666543
No 82
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=35.00 E-value=3.4e+02 Score=29.79 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=55.9
Q ss_pred CCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhh----c----cCc---------hhHHHHHHHHHHHHHhh
Q 002126 791 EPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICC----T----AMH---------RGAALAAMSYLSCFLEE 853 (962)
Q Consensus 791 ~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l----~----~~e---------~~~~~a~~~fl~~li~~ 853 (962)
.+.++...++|+..++....+..... ++. -|++...++ . ..+ +.+-....+||..|+..
T Consensus 69 ~~~~~~~~LrLL~~iv~f~~g~~a~~---v~~-~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~ 144 (330)
T PF11707_consen 69 KPSLTNPALRLLTAIVSFDGGALARE---VLR-SFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSS 144 (330)
T ss_pred cHHHHHHHHHHHHHHHccCCHHHHHH---HHH-hcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHcc
Confidence 37788899999999998544333221 111 122222211 0 011 16666788999999975
Q ss_pred hhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHHHHHH
Q 002126 854 CLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQ 910 (962)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rs~~~~~~~iL~ 910 (962)
.. .....+++.+++. +..+++++.. -|.+.+..+=+.|.
T Consensus 145 ~~---------------~~~~~~lL~~~~~--~~~l~k~l~~-D~~~~v~~iL~~l~ 183 (330)
T PF11707_consen 145 GD---------------PELKRDLLSQKKL--MSALFKGLRK-DPPETVILILETLK 183 (330)
T ss_pred CC---------------HHHHHHHHHcCch--HHHHHhcccC-CCHHHHHHHHHHHH
Confidence 32 1456677766665 8888888875 44344443333333
No 83
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=33.40 E-value=8.5e+02 Score=28.58 Aligned_cols=343 Identities=14% Similarity=0.167 Sum_probs=156.7
Q ss_pred HHHHHhhHHHHHhChhc-hHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhh---cccCCCccHHHHHHHHHHHHhcCC
Q 002126 510 ADVIGSYSKWISAFQTN-ARPLLLFLAAGISEAV--SSNACASALRKICEDAS---ALIDEPSNLEILMWIGEALEKRHL 583 (962)
Q Consensus 510 ~~~ig~ys~wl~~~p~~-L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~---~~l~~p~~~~~l~~~~~~l~~~~l 583 (962)
+.+|++.-. ...|.. ++...+++..++.+|. ++..|++++.++.+.-. ..+.....++.+..+.. .-
T Consensus 59 ~~iL~~~l~--~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~-----~~ 131 (503)
T PF10508_consen 59 CDILKRLLS--ALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR-----DP 131 (503)
T ss_pred HHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc-----CC
Confidence 466666554 234543 7888899999999865 88999998888764322 12221112233333221 11
Q ss_pred ChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-HHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhccc
Q 002126 584 PLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSS-YEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSH 662 (962)
Q Consensus 584 ~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~ 662 (962)
+.+......+.+..+...- ..++.++.+- ...+.+++...+ ... -++.++.+..+.+.
T Consensus 132 d~~Va~~A~~~L~~l~~~~-------~~~~~l~~~~~~~~L~~l~~~~~-------~~v-------R~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 132 DLSVAKAAIKALKKLASHP-------EGLEQLFDSNLLSKLKSLMSQSS-------DIV-------RCRVYELLVEIASH 190 (503)
T ss_pred cHHHHHHHHHHHHHHhCCc-------hhHHHHhCcchHHHHHHHHhccC-------HHH-------HHHHHHHHHHHHhc
Confidence 2333444444555444321 1223332222 455555554421 111 02334434443332
Q ss_pred ccccCCCCCCCCchHHHHHHHHHH--HHHHHHHhhhc-cchHHHHHHHHHHHHHHHhh-hhhh---HhhHHHHHHHHHHh
Q 002126 663 LPVPLPTNPAGDDPIFALLRVFWP--MLEKLFRSEHM-ENGNLSTAACRALSLAIQSS-GQHF---VTLLPQVLDCLSTN 735 (962)
Q Consensus 663 l~~~~~~~~~~~~p~~~~~~~i~~--~l~~i~~~~~~-~~~~v~e~~c~~~~~~~~~l-~~~~---~p~l~~~~~~l~~~ 735 (962)
-. ..++.++. ++..++. ... .|.-+-..++.++......- |-.. ..+++.+++.+...
T Consensus 191 S~--------------~~~~~~~~sgll~~ll~-eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 191 SP--------------EAAEAVVNSGLLDLLLK-ELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred CH--------------HHHHHHHhccHHHHHHH-HhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcc
Confidence 11 12222332 4455544 233 33333446666666554421 1110 12334444444322
Q ss_pred hhhhcCcchHHHHHHHHHHHhcCCCCc-cchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhH-HH
Q 002126 736 FVSFQNHECYIRTASVVIEEFGHKDEY-GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRK-EV 813 (962)
Q Consensus 736 f~~~~~~~~~L~l~~~lv~~~g~~~~~-~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~-~~ 813 (962)
. .+|...-+++.+. +.-||.-... .+.+...+..|.... +..+. ..+++....-|+-++.+-...-+ .+
T Consensus 256 -~-~dp~~~~~~l~g~-~~f~g~la~~~~~~v~~~~p~~~~~l-~~~~~-----s~d~~~~~~A~dtlg~igst~~G~~~ 326 (503)
T PF10508_consen 256 -E-EDPRLSSLLLPGR-MKFFGNLARVSPQEVLELYPAFLERL-FSMLE-----SQDPTIREVAFDTLGQIGSTVEGKQL 326 (503)
T ss_pred -c-cCCcccchhhhhH-HHHHHHHHhcChHHHHHHHHHHHHHH-HHHhC-----CCChhHHHHHHHHHHHHhCCHHHHHH
Confidence 1 1231122222222 2333322111 123334444444443 32232 35676777666666666544322 22
Q ss_pred H-hhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHH
Q 002126 814 L-AASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYA 892 (962)
Q Consensus 814 l-~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~ 892 (962)
+ ...++.+..++..+....+..-.+....+++-++.++..... ++.++.....+.++...|..=...++..
T Consensus 327 L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~--------~~~~~i~~~~~~w~~~~~~~~~~~~l~~ 398 (503)
T PF10508_consen 327 LLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD--------RQDNDILSITESWYESLSGSPLSNLLMS 398 (503)
T ss_pred HHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC--------CchHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 2 222245666666666556666667888888888888854321 1222344556667766555444434545
Q ss_pred hcCCCcccchhh-HHHHHHHHH
Q 002126 893 LLGVSAMSRVHK-CATILQQLA 913 (962)
Q Consensus 893 ~~g~~~rs~~~~-~~~iL~~l~ 913 (962)
+. .-|-.++.. ...+|.+++
T Consensus 399 ~~-~qPF~elr~a~~~~l~~l~ 419 (503)
T PF10508_consen 399 LL-KQPFPELRCAAYRLLQALA 419 (503)
T ss_pred Hh-cCCchHHHHHHHHHHHHHh
Confidence 44 333333332 224445554
No 84
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=32.81 E-value=6.4e+02 Score=30.83 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=70.6
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhH
Q 002126 698 ENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAA 777 (962)
Q Consensus 698 ~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~ 777 (962)
+|..+.|.+-..++..+..-.+. -++..++.-|-.+ ...- .+.+++ ..++ |.=..+|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~y~~~t-~s~~---~~~il~-~~~~-----P~~K~~~~~l~~~- 78 (668)
T PF04388_consen 16 NDLSVLEEIKALLQELLNSDREP------WLVNGLVDYYLST-NSQR---ALEILV-GVQE-----PHDKHLFDKLNDY- 78 (668)
T ss_pred CchhhHHHHHHHHHHHhhccchH------HHHHHHHHHHhhc-CcHH---HHHHHH-hcCC-----ccHHHHHHHHHHH-
Confidence 57778888888888777764332 2234444444333 2111 222232 1222 1122333333332
Q ss_pred HHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhh-chhchHHHHHHHHHhhcc-CchhHHHHHHHHHHHHHhh
Q 002126 778 SVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAA-SGALLEVSFQKAAICCTA-MHRGAALAAMSYLSCFLEE 853 (962)
Q Consensus 778 ~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~-~~~~l~~~l~~~l~~l~~-~e~~~~~a~~~fl~~li~~ 853 (962)
-..|+..-..+.|+..++++.|.-+..- ..+ +|.-.+.+|.. .+..++-+|+..++.++-.
T Consensus 79 -----------~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~----Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 79 -----------FVKPSYRLQALTLLGHFVRSQPPWLYKILQTP----LFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred -----------HcCchhHHHHHHHHHHHHhcCCchHHHHhcCh----hHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 1357888999999999999988776543 113 44445555654 3566678888888888854
No 85
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=31.27 E-value=44 Score=31.48 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=31.0
Q ss_pred HHHHHHhhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHH
Q 002126 509 LADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASAL 551 (962)
Q Consensus 509 ~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~~~~~Aa~al 551 (962)
++.++++|..|+.-+.-.-.+.++.+++.+++|.++..|+..+
T Consensus 106 ~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 106 ALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3588888888876543333447888888889999988888754
No 86
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=27.44 E-value=4.3e+02 Score=26.21 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh---hhhhhHhhHHHHHHHH
Q 002126 677 IFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQS---SGQHFVTLLPQVLDCL 732 (962)
Q Consensus 677 ~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~---l~~~~~p~l~~~~~~l 732 (962)
+++++-++.+-++..+.. .|.+|+.++..+++..+++ .|+...|++..++..+
T Consensus 74 ilPvlPqLI~plk~AL~t---r~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 74 ILPVLPQLIIPLKRALNT---RDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 556665656656655542 7899999999999999664 4666777766665544
No 87
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.62 E-value=5.2e+02 Score=25.61 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=52.5
Q ss_pred CchhHHHHHHHHHHHHHhhcccCC------C--ccH-------HHHHHHHHHHH---hcCCChhhHHHHHHHHHHHhccC
Q 002126 541 AVSSNACASALRKICEDASALIDE------P--SNL-------EILMWIGEALE---KRHLPLEDEEEVVGAISLILGSV 602 (962)
Q Consensus 541 ~~~~~~Aa~al~~lc~~c~~~l~~------p--~~~-------~~l~~~~~~l~---~~~l~~~~~~~l~eai~~vi~~l 602 (962)
+.++.+|+.++..+-+.++..+.. + .+. ..+.+++..+. ...-+......+++.++.++++-
T Consensus 54 ~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t 133 (182)
T PF13251_consen 54 PKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT 133 (182)
T ss_pred hhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC
Confidence 348888988888887776654421 0 121 23344444432 22334456778999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcc
Q 002126 603 SNKELKNNLLARLLSSSYEAIGKLIDG 629 (962)
Q Consensus 603 p~~e~~~~~l~~ll~p~~~~l~~~~~~ 629 (962)
|-+.-.. .++.+++..+...+..
T Consensus 134 PY~rL~~----~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 134 PYHRLPP----GLLTEVVTQVRPLLRH 156 (182)
T ss_pred ChhhcCH----hHHHHHHHHHHHHHhc
Confidence 9876433 5566666666666654
No 88
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=25.41 E-value=2.8e+02 Score=28.11 Aligned_cols=63 Identities=13% Similarity=0.261 Sum_probs=48.8
Q ss_pred HhcCCCChHHHHHHHHHHHHhhcC--hHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHH
Q 002126 15 VLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (962)
Q Consensus 15 ~ly~~~d~~~~~~A~~~L~~~Q~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~ 87 (962)
.+|+-+.|..|+-|..++.+.+.. ++-|.++..|.+++- -|.|++|...|..+.. .+++++..
T Consensus 19 ~f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~~~------~E~r~~al~~l~~~~~----~~~~~~~~ 83 (208)
T cd07064 19 PFYGIKTPERRALSKPFLKESKLPDKEELWELVLELWQQPE------REYQYVAIDLLRKYKK----FLTPEDLP 83 (208)
T ss_pred ccCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcchH------HHHHHHHHHHHHHHHh----cCCHHHHH
Confidence 367778899999999999988775 678999999997643 4899999988877543 25555533
No 89
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.22 E-value=1.8e+03 Score=29.64 Aligned_cols=123 Identities=11% Similarity=0.146 Sum_probs=73.3
Q ss_pred HHHHHHHh---cCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhh
Q 002126 423 LLVDICQL---LRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELK 499 (962)
Q Consensus 423 ~l~~~~~i---l~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~ 499 (962)
+-++.|.+ +|.+..+++-.+-+ +.+..|..--.+-|.+++|++.-.+... |.+.++++.|-....+..
T Consensus 941 TYKELc~LASdl~qPdLVYKFM~LA----nh~A~wnSk~GaAfGf~~i~~~a~~kl~----p~l~kLIPrLyRY~yDP~- 1011 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQPDLVYKFMQLA----NHNATWNSKKGAAFGFGAIAKQAGEKLE----PYLKKLIPRLYRYQYDPD- 1011 (1702)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHh----hhhchhhcccchhhchHHHHHHHHHhhh----hHHHHhhHHHhhhccCCc-
Confidence 33444444 56554444433322 2345799999999999999876654333 777778877753221111
Q ss_pred hHHHHHHHHHHHHHHhhHHH-HHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHH
Q 002126 500 GFMHIVYRSLADVIGSYSKW-ISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED 557 (962)
Q Consensus 500 ~~~~v~~~t~~~~ig~ys~w-l~~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~ 557 (962)
+.|+.+.. .+-+....= =..--+|+..++.=|+.++.+.+ ++.++|.|+..|-+.
T Consensus 1012 --~~Vq~aM~-sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1012 --KKVQDAMT-SIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred --HHHHHHHH-HHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC
Confidence 11332221 111111100 00112588999999999999875 899999999999876
No 90
>PRK10236 hypothetical protein; Provisional
Probab=25.14 E-value=1.3e+02 Score=30.84 Aligned_cols=60 Identities=13% Similarity=0.242 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHH---Hhhc---ChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcC
Q 002126 7 IKVAQAVHVLNHDTESCNRVAANQWLV---QFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (962)
Q Consensus 7 ~~v~~ai~~ly~~~d~~~~~~A~~~L~---~~Q~---s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~ 77 (962)
+++...+..|-++.|-. ....+-|. .+++ .+.-..--|+++. .+.|+||+.++.+.++..
T Consensus 20 edL~~Lv~~Lt~d~dG~--~R~te~lt~~~~yk~~~~~~~~~~~yw~~Ia---------~elq~fGgnt~~n~lRG~ 85 (237)
T PRK10236 20 EQLANFARLLTHNEKGK--TRLSSVLMRNELFKSMEGHPEQHRRNWQLIA---------GELQHFGGDSIANKLRGH 85 (237)
T ss_pred HHHHHHHHHHhcCCCCC--EeehhhhcccHHHHhhcccchhHHHHHHHHH---------HHHHHhcchHHHHHHhcC
Confidence 46777777776554422 22333333 4555 3333223333442 489999999999888753
No 91
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=24.76 E-value=1.1e+02 Score=21.58 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=20.0
Q ss_pred HHHHHHHhccc--CchhHHHHHHHHHHHH
Q 002126 530 LLLFLAAGISE--AVSSNACASALRKICE 556 (962)
Q Consensus 530 vL~~l~~~l~~--~~~~~~Aa~al~~lc~ 556 (962)
+++.|+.-+.+ ++++..|+.|+.+||+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 45566666665 4489999999999983
No 92
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=22.42 E-value=5.7e+02 Score=32.36 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=54.0
Q ss_pred HHhhHHHHHhChhchHHHHHHHHHh-ccc--CchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHH
Q 002126 513 IGSYSKWISAFQTNARPLLLFLAAG-ISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEE 589 (962)
Q Consensus 513 ig~ys~wl~~~p~~L~~vL~~l~~~-l~~--~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~ 589 (962)
-+..+..++..|.|..++++=++.. +.| +.++..||.++.+|...-.+.+.. +.++.++.... .-+...|.
T Consensus 527 y~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~-~~L~~lld~~l-----s~~~~~r~ 600 (1133)
T KOG1943|consen 527 YLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD-YVLPPLLDSTL-----SKDASMRH 600 (1133)
T ss_pred HHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc-cchhhhhhhhc-----CCChHHhh
Confidence 3444556677788999999988754 664 568999999999999887766642 34444433221 12445566
Q ss_pred HHHHHHHHHhcc
Q 002126 590 EVVGAISLILGS 601 (962)
Q Consensus 590 ~l~eai~~vi~~ 601 (962)
..+-+.|.|+.+
T Consensus 601 g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 601 GVFLAAGEVIGA 612 (1133)
T ss_pred hhHHHHHHHHHH
Confidence 666666666654
No 93
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=22.11 E-value=5.6e+02 Score=27.51 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCh---HHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCC
Q 002126 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTD---AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (962)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~---~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~ 82 (962)
++.|.++++.|-.-...........+|...-++- ..|.+...|+..-- ...--.||- ..-...+. ......
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl----~~v~~e~~~-~~p~~~~~-~~~~~~ 75 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKL----EKVIDEFFE-SAPEESGP-QNPNVE 75 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHH----HHHHHHHHh-cCccccCC-CCCCcc
Confidence 3577888888876545566778888888887773 46888777775310 001112220 00001111 123445
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 002126 83 SAAKDALLNALLVAAKRFSSGPPQLLTQICLALSAL 118 (962)
Q Consensus 83 ~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l 118 (962)
...+..++..+..++..|.. +++-+.+||.-|..=
T Consensus 76 ~~~~~~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~P 110 (288)
T PF09184_consen 76 PEDYEEMKERILELLDSFDE-PPFTIQRLCELLLDP 110 (288)
T ss_pred hhhHHHHHHHHHHHHHhcCC-CChhHHHHHHHHhCh
Confidence 56788999999999998876 899999999766553
No 94
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=22.05 E-value=1.7e+03 Score=28.93 Aligned_cols=145 Identities=13% Similarity=0.112 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhhccCCchHHHHHHHhhcccCCCcchHHHHHHHhhccccccc
Q 002126 84 AAKDALLNALLVAAKRFSSGP-PQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (962)
Q Consensus 84 e~~~~Lr~~Ll~~l~~~~~~~-~~v~~kL~~aLa~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~ 162 (962)
.+.+.|.+.+=++...+..++ +.|++-|-..++.|..-+. .. ..+..+|.+|-+.- .|
T Consensus 570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG--------------k~----ksND~iLshLiTfL---ND 628 (1431)
T KOG1240|consen 570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG--------------KE----KSNDVILSHLITFL---ND 628 (1431)
T ss_pred hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh--------------hc----ccccchHHHHHHHh---cC
Confidence 456667777666666655555 4788888888777654433 21 11222332222111 11
Q ss_pred ccccccCCCHHHHHHHHHHHHh---------hhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccc
Q 002126 163 SQASDCNISSAHRSQYGQELLS---------HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (962)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~---------~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~ 233 (962)
+ .+.-|..+.+.+.. ..+.++-+|.+.++. ..+.+...+|+|+..-++.|- +.
T Consensus 629 --k-----Dw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD--------~EE~Viv~aL~~ls~Lik~~l---l~ 690 (1431)
T KOG1240|consen 629 --K-----DWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTD--------GEEAVIVSALGSLSILIKLGL---LR 690 (1431)
T ss_pred --c-----cHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccC--------cchhhHHHHHHHHHHHHHhcc---cc
Confidence 0 23345555555442 133455566655543 235688999999999999872 22
Q ss_pred chhhhhcchHHHHHHhcCCCCc--HHHHHHHHHHHHhc
Q 002126 234 QGSLAAHPLLNFVFNSLQVQSS--FDVAIEVLVELVGR 269 (962)
Q Consensus 234 ~~~~~~~~ll~~~~~~L~~~~~--~~~a~~~l~eil~~ 269 (962)
-- .--.+++.+...|-.|.. +.+++..|.++..+
T Consensus 691 K~--~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 691 KP--AVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred hH--HHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 11 223456666666666654 56778777776654
No 95
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.46 E-value=1.6e+03 Score=27.72 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcCCC
Q 002126 681 LRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKD 760 (962)
Q Consensus 681 ~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~ 760 (962)
..-+.|-++.++. + .++-|..++.-|.-|.++.....+..|++.....+.+ . .|+..+.....+.......+
T Consensus 140 ardlapeVe~Ll~--~-~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~e----k-~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 140 ARDLAPEVERLLQ--H-RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCE----K-HHGVLIAGLHLITELCKISP 211 (866)
T ss_pred hHHhhHHHHHHHh--C-CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhh----c-CCceeeeHHHHHHHHHhcCH
Confidence 3455888888886 3 6788888888888888887666556666666555543 1 23333222222222222111
Q ss_pred CccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHh--hhHHHHh-hchhchHHHHHHHHHhhccCch
Q 002126 761 EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRT--SRKEVLA-ASGALLEVSFQKAAICCTAMHR 837 (962)
Q Consensus 761 ~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~--~p~~~l~-~~~~~l~~~l~~~l~~l~~~e~ 837 (962)
+... ..-|++.+|+..+..+... .|..=++ .+.|+++--+-..+.-++..+.
T Consensus 212 ~~l~-------------------------~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 212 DALS-------------------------YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred HHHH-------------------------HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 1011 1122444454444444443 1222111 1334555433344555777889
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 002126 838 GAALAAMSYLSCFLEECL 855 (962)
Q Consensus 838 ~~~~a~~~fl~~li~~~~ 855 (962)
++.......|..+.+.+-
T Consensus 267 daSd~M~DiLaqvatntd 284 (866)
T KOG1062|consen 267 DASDLMNDILAQVATNTD 284 (866)
T ss_pred cHHHHHHHHHHHHHhccc
Confidence 999999998888887654
No 96
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=20.21 E-value=1.6e+03 Score=27.35 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=60.0
Q ss_pred CChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhccc
Q 002126 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSH 662 (962)
Q Consensus 583 l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~ 662 (962)
.+.+...-++|-.-.+++.+|+++-... ++.-+...+ +.. +... + -.++.++.++.+.
T Consensus 362 ~~~~~~l~i~e~mdlL~~Kt~~e~~~~~----IlplL~~S~----~~~-------~~~i-----Q--~~~L~~lptv~e~ 419 (700)
T KOG2137|consen 362 DPKQALLFILENMDLLKEKTPPEEVKEK----ILPLLYRSL----EDS-------DVQI-----Q--ELALQILPTVAES 419 (700)
T ss_pred CcccchhhHHhhHHHHHhhCChHHHHHH----HHHHHHHHh----cCc-------chhh-----H--HHHHHhhhHHHHh
Confidence 3456678888888889999998774333 332222221 110 0000 1 1234444444433
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh-hhHhhHHHHH
Q 002126 663 LPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQ-HFVTLLPQVL 729 (962)
Q Consensus 663 l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~-~~~p~l~~~~ 729 (962)
++ ..-+-+.++|-+..+.- ...+..+.-.+..|+...+..+.. .+.+.++++.
T Consensus 420 iD------------~~~vk~~ilP~l~~l~~--~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~ 473 (700)
T KOG2137|consen 420 ID------------VPFVKQAILPRLKNLAF--KTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPIL 473 (700)
T ss_pred cc------------HHHHHHHHHHHhhcchh--cccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 22 12245778888888843 335666777777888887766544 2344444443
Done!