Query 002126
Match_columns 962
No_of_seqs 199 out of 1080
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 13:26:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hat_C Exportin-1; heat repeat 100.0 3.5E-85 1.2E-89 813.5 72.9 868 3-947 13-971 (1023)
2 3gjx_A Exportin-1; transport, 100.0 3.9E-84 1.3E-88 797.3 69.7 874 6-946 27-990 (1073)
3 2x1g_F Cadmus; transport prote 100.0 7.2E-85 2.5E-89 829.5 63.4 867 1-942 1-921 (971)
4 3ibv_A Exportin-T; karyopherin 100.0 7.8E-81 2.7E-85 775.2 72.6 853 6-944 5-942 (980)
5 2x19_B Importin-13; nuclear tr 100.0 7.4E-80 2.5E-84 784.1 78.9 854 5-942 22-909 (963)
6 3m1i_C Exportin-1; heat repeat 100.0 1E-68 3.6E-73 683.2 76.2 858 6-941 15-964 (1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 1.6E-54 5.3E-59 553.5 60.8 710 5-758 9-860 (1204)
8 1wa5_C Importin alpha RE-expor 100.0 5.9E-31 2E-35 332.7 61.1 719 3-851 1-790 (960)
9 4fdd_A Transportin-1; heat rep 100.0 1.9E-30 6.5E-35 324.9 59.1 701 4-913 10-741 (852)
10 2bpt_A Importin beta-1 subunit 100.0 4.4E-28 1.5E-32 304.6 65.3 714 7-853 4-764 (861)
11 1qgr_A Protein (importin beta 100.0 2E-23 7E-28 262.6 61.6 711 9-853 3-775 (876)
12 1ibr_B P95, importin beta-1 su 99.9 5.7E-20 2E-24 213.0 32.2 432 9-539 3-461 (462)
13 1u6g_C TIP120 protein, CAND1; 99.5 3.4E-10 1.1E-14 147.2 45.6 671 7-853 6-722 (1230)
14 2bpt_A Importin beta-1 subunit 99.4 4.7E-07 1.6E-11 113.0 64.1 543 210-855 109-714 (861)
15 1qgr_A Protein (importin beta 99.3 1E-06 3.4E-11 110.2 63.1 542 214-853 107-723 (876)
16 4fdd_A Transportin-1; heat rep 99.3 3.5E-07 1.2E-11 113.9 56.7 514 209-854 103-660 (852)
17 1w9c_A CRM1 protein, exportin 99.3 7.6E-10 2.6E-14 115.9 26.0 202 722-942 68-277 (321)
18 1b3u_A Protein (protein phosph 98.7 3.8E-05 1.3E-09 90.9 38.5 561 5-712 8-584 (588)
19 1u6g_C TIP120 protein, CAND1; 98.7 0.00014 4.6E-09 94.4 44.5 555 208-854 18-681 (1230)
20 1b3u_A Protein (protein phosph 98.6 8.9E-05 3E-09 87.7 37.7 473 9-598 88-585 (588)
21 1ibr_B P95, importin beta-1 su 97.6 0.11 3.8E-06 58.6 34.0 112 451-573 339-454 (462)
22 2qk1_A Protein STU2; STU2P, XM 97.0 0.02 6.8E-07 59.0 17.4 143 451-604 27-179 (249)
23 2vgl_B AP-2 complex subunit be 96.9 0.29 1E-05 57.4 28.8 461 16-598 57-530 (591)
24 2qk2_A LP04448P; mini spindles 96.5 0.076 2.6E-06 54.3 16.9 155 451-622 26-184 (242)
25 2x1g_F Cadmus; transport prote 96.1 0.67 2.3E-05 58.0 25.9 281 524-852 454-760 (971)
26 2jdq_A Importin alpha-1 subuni 96.0 0.24 8.1E-06 55.7 19.9 335 209-600 33-390 (450)
27 1wa5_B Importin alpha subunit; 95.4 0.58 2E-05 54.0 20.0 330 209-601 100-458 (530)
28 4hat_C Exportin-1; heat repeat 94.9 7.4 0.00025 48.4 29.0 304 510-856 474-837 (1023)
29 1wa5_C Importin alpha RE-expor 94.6 13 0.00043 46.2 58.3 265 543-853 377-671 (960)
30 2vgl_B AP-2 complex subunit be 94.4 9.7 0.00033 44.2 29.9 414 17-553 95-529 (591)
31 1w63_A Adapter-related protein 94.3 10 0.00036 44.2 36.0 468 19-598 81-575 (618)
32 4b8j_A Importin subunit alpha- 94.0 4.4 0.00015 46.4 22.7 341 452-854 86-445 (528)
33 1wa5_B Importin alpha subunit; 93.5 1.2 4E-05 51.3 16.8 293 210-560 145-461 (530)
34 2qk2_A LP04448P; mini spindles 93.5 1.2 4E-05 45.2 14.9 152 682-854 55-207 (242)
35 3tpo_A Importin subunit alpha- 93.4 13 0.00043 42.6 25.2 98 209-312 89-190 (529)
36 2z6g_A B-catenin; FULL-length, 92.4 23 0.0008 42.6 31.6 288 7-351 115-420 (780)
37 3ul1_B Importin subunit alpha- 92.2 6 0.00021 45.0 20.1 98 209-312 70-171 (510)
38 3gjx_A Exportin-1; transport, 91.9 11 0.00039 46.7 23.0 60 798-857 802-864 (1073)
39 2x19_B Importin-13; nuclear tr 91.8 31 0.0011 42.6 40.8 95 455-557 161-269 (963)
40 3m1i_C Exportin-1; heat repeat 91.7 34 0.0012 42.8 32.8 177 546-757 432-621 (1049)
41 2qk1_A Protein STU2; STU2P, XM 90.2 5.9 0.0002 40.2 15.5 154 683-855 60-223 (249)
42 2jdq_A Importin alpha-1 subuni 90.0 26 0.00089 38.5 26.5 294 13-358 70-389 (450)
43 1w63_A Adapter-related protein 89.5 37 0.0013 39.5 26.5 109 504-628 123-233 (618)
44 1w9c_A CRM1 protein, exportin 88.8 7.1 0.00024 40.8 14.7 169 211-395 44-225 (321)
45 4b8j_A Importin subunit alpha- 86.6 47 0.0016 37.5 27.1 287 21-359 131-443 (528)
46 4db8_A Armadillo-repeat protei 86.0 17 0.00059 36.3 16.0 191 39-270 11-211 (252)
47 1oyz_A Hypothetical protein YI 84.6 37 0.0013 34.5 22.5 217 9-266 25-248 (280)
48 3u0r_A Apoptosis inhibitor 5; 83.4 32 0.0011 37.8 16.7 132 681-815 213-366 (507)
49 3ibv_A Exportin-T; karyopherin 80.6 1.2E+02 0.004 37.4 29.0 168 685-855 534-733 (980)
50 2iw3_A Elongation factor 3A; a 80.2 25 0.00085 43.0 16.1 208 455-716 110-325 (986)
51 4hxt_A De novo protein OR329; 78.8 52 0.0018 32.3 20.9 220 9-270 4-243 (252)
52 2iw3_A Elongation factor 3A; a 78.5 61 0.0021 39.6 18.8 233 458-745 70-311 (986)
53 3tpo_A Importin subunit alpha- 76.4 1.1E+02 0.0036 34.6 23.5 291 511-854 142-451 (529)
54 4db6_A Armadillo repeat protei 73.2 66 0.0022 30.7 16.2 188 38-266 10-207 (210)
55 4hxt_A De novo protein OR329; 72.2 77 0.0026 31.0 19.1 177 59-270 15-201 (252)
56 1xqr_A HSPBP1 protein; armadil 69.6 15 0.00052 38.2 9.3 136 452-602 94-240 (296)
57 3ul1_B Importin subunit alpha- 69.5 1.5E+02 0.0051 33.2 25.9 293 9-351 59-379 (510)
58 2db0_A 253AA long hypothetical 68.9 22 0.00074 33.7 8.8 118 460-600 127-246 (253)
59 3a6p_A Exportin-5; exportin-5, 68.0 42 0.0014 42.6 14.7 64 790-853 314-381 (1204)
60 4db6_A Armadillo repeat protei 67.6 4.6 0.00016 39.3 4.7 139 451-601 23-168 (210)
61 1oyz_A Hypothetical protein YI 57.5 1.6E+02 0.0055 29.5 16.3 145 416-598 39-186 (280)
62 2of3_A ZYG-9; multifunctional 51.8 2E+02 0.0069 29.0 19.8 169 60-271 60-239 (266)
63 4db8_A Armadillo-repeat protei 51.1 22 0.00077 35.4 6.6 137 453-601 67-210 (252)
64 2of3_A ZYG-9; multifunctional 49.2 2.2E+02 0.0076 28.7 15.4 97 343-470 100-197 (266)
65 3ltm_A Alpha-REP4; protein eng 42.5 2.2E+02 0.0077 26.8 18.6 178 9-224 21-202 (211)
66 3ltj_A Alpharep-4; protein eng 39.3 2.4E+02 0.0083 26.3 12.8 135 419-598 60-196 (201)
67 1vsy_4 Proteasome activator BL 39.0 5.6E+02 0.019 30.4 19.4 118 680-810 336-458 (799)
68 4ffb_C Protein STU2; tubulin f 36.0 1.1E+02 0.0037 31.1 9.0 66 789-855 150-215 (278)
69 1xqr_A HSPBP1 protein; armadil 27.4 5.1E+02 0.017 26.4 21.4 105 4-121 25-155 (296)
70 2z6g_A B-catenin; FULL-length, 23.0 9.7E+02 0.033 28.1 27.6 247 18-313 160-428 (780)
71 4atg_A TAF6; transcription, TF 21.6 5.3E+02 0.018 24.5 12.7 92 526-628 84-181 (196)
72 3ltm_A Alpha-REP4; protein eng 21.1 4.1E+02 0.014 24.9 9.8 121 12-160 85-205 (211)
73 1xm9_A Plakophilin 1; armadill 21.1 8.1E+02 0.028 26.5 20.7 69 529-601 44-117 (457)
74 1vsy_4 Proteasome activator BL 20.1 1.1E+03 0.038 27.8 22.6 58 793-853 631-688 (799)
No 1
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=3.5e-85 Score=813.55 Aligned_cols=868 Identities=14% Similarity=0.160 Sum_probs=683.3
Q ss_pred chHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCC
Q 002126 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (962)
Q Consensus 3 ~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~ 82 (962)
|| .+.+++||+++|+++++ .|++|++||++||++|++|.+|..+|+.+ .+.++|||||++|++||+++|..+|
T Consensus 13 ~d-v~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~s-----~~~~vR~faa~~Lk~~I~~~W~~L~ 85 (1023)
T 4hat_C 13 LD-IALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQFS-----TNPQSKFIALSILDKLITRKWKLLP 85 (1023)
T ss_dssp CC-HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred CC-HHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHhhhhcCC
Confidence 44 67999999999977654 89999999999999999999999999763 3579999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHh
Q 002126 83 SAAKDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (962)
Q Consensus 83 ~e~~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~ 154 (962)
++++..||+.|++++.++..+ ++.|++|||.+++.++.+.+ .||+++.+++..+++ ++..+.++|.+|+
T Consensus 86 ~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~ 162 (1023)
T 4hat_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLK 162 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 999999999999999886543 57899999999999999985 699999999999975 3456788999999
Q ss_pred hcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccc
Q 002126 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ 234 (962)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~ 234 (962)
.|+||+.+.... .++..||..+++.|..+++.|++++.+++.... +.++...+|+|+.+|+. |+|.
T Consensus 163 ~L~EEV~~~~~~--~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-------~~~l~~~~L~~l~s~l~-----WI~i 228 (1023)
T 4hat_C 163 LLSEEVFDFSAE--QMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-------SSSLIVATLESLLRYLH-----WIPY 228 (1023)
T ss_dssp HHHHHHHTSCTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-------SCHHHHHHHHHHHHHTT-----TSCT
T ss_pred HHHHHHHHhhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHH-----hCCH
Confidence 999999764322 267889999999999999999999999987642 34678899999999999 8899
Q ss_pred hhhhhcchHHHHH-HhcCCCCcHHHHHHHHHHHHhcCC--C---hhHH---HHhh------------hhhhHHhhhhhhh
Q 002126 235 GSLAAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE--G---LPQA---LLCR------------VPFLKELLLLPAL 293 (962)
Q Consensus 235 ~~~~~~~ll~~~~-~~L~~~~~~~~a~~~l~eil~~~~--~---~~~~---l~~~------------~~~l~~~~~~~~~ 293 (962)
+.+.++++++.+| ..|.+++++++|++|+++++++.. + +.+. +++. ...+.+.+. ..
T Consensus 229 ~~i~~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~--~~ 306 (1023)
T 4hat_C 229 RYIYETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NA 306 (1023)
T ss_dssp HHHHSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHH--HT
T ss_pred HHhcchhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHh--cc
Confidence 9888899999999 999999999999999999998431 2 3321 2222 233444443 23
Q ss_pred ccCcHhHHhhHHHHHHHHhHhhhHHHHhcCh--h-HHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhh
Q 002126 294 TDGDEKVIGGLACLMSEIGQAAPSLIVEASP--E-ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK 370 (962)
Q Consensus 294 ~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~--~-~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~ 370 (962)
.++|.+.++++|++|+++|++|...+.+++. . ....++.|+.|++++ |++++++||+|||.|+++++..
T Consensus 307 ~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~--d~ei~~~tl~FW~~L~~~l~~e------ 378 (1023)
T 4hat_C 307 NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYE------ 378 (1023)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTTS------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHhc------
Confidence 4567889999999999999999998876532 2 234577999999997 7999999999999999988642
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhccCCCCC-----CCCC------CCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHH
Q 002126 371 NKKHVEDMFFSVFSALLDALLLRAQVDESSF-----NDDG------MVDLPDGLVQFRMNLVELLVDICQLLRSATFIQK 439 (962)
Q Consensus 371 ~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~-----~~~~------~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~ 439 (962)
+.....|+|+|.+|+.++++||+||++.. .++| +.|+.+.|+.|| |+|.+++.+.|++ ++..
T Consensus 379 --~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~-~~~~ 451 (1023)
T 4hat_C 379 --PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVID-TEEI 451 (1023)
T ss_dssp --TTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHH-HHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHHH-HHHH
Confidence 12457899999999999999999998421 1133 445667788888 9999999988864 5666
Q ss_pred HHHhhhcC-CCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHH
Q 002126 440 VFFGSWGS-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSK 518 (962)
Q Consensus 440 ~~~~l~~~-~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~ 518 (962)
+++.+... .+++++|+.+||++||+++|++++.++.....++.+++.+..++.+...+. ..+.++. |+|+++|+|++
T Consensus 452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d-~k~~v~~-t~~~~lGry~~ 529 (1023)
T 4hat_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD-NKAVVAS-DIMYVVGQYPR 529 (1023)
T ss_dssp HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH-HHHHHHH-HHHHHHHTCHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc-chHHHHH-HHHHHHHHHHH
Confidence 66554321 123478999999999999999998754221125677776667775421110 0112344 55799999999
Q ss_pred HHHhChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCC------CccHHHHHHHHHHHHhcCCChhhHHH
Q 002126 519 WISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE------PSNLEILMWIGEALEKRHLPLEDEEE 590 (962)
Q Consensus 519 wl~~~p~~L~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~------p~~~~~l~~~~~~l~~~~l~~~~~~~ 590 (962)
|+..||++|+++++++++++++ |+++.+||.||++||++|+..+.. +++++.+.+.+.... ..++..++..
T Consensus 530 wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~-~~l~~~~~~~ 608 (1023)
T 4hat_C 530 FLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT-ADLQPQQVHT 608 (1023)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH-TTSCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHH-HhCCHHHHHH
Confidence 9999999999999999999964 579999999999999999988742 235665555444432 3678999999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhH--HHhHHHHHHHHhhhhhcccccccCC
Q 002126 591 VVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYT--QILSSATRGLYRMGTVFSHLPVPLP 668 (962)
Q Consensus 591 l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~l~~L~~i~~~l~~~~~ 668 (962)
+++|+|.+|+++|+++.+..+++.|+.|+.+.|+++.++.. .++..+. +..+.....+++++++.+.+.
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~-----~~~~~~~d~~~~~~l~~il~~~~~v~~~lg---- 679 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQST-----ANPTLLLDSETVKIIANIIKTNVAVCTSMG---- 679 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHH-----HCTTGGGCHHHHHHHHHHHHHHHHHHHHHG----
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHh-----cCchhhcCHHHHHHHHHHHHHHHHHHHHhc----
Confidence 99999999999999887899999999999999999987531 1222221 112233334444444444333
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhhhccc--------hHH-----HHHHHHHHHHHHHhh-----hhh------hHhh
Q 002126 669 TNPAGDDPIFALLRVFWPMLEKLFRSEHMEN--------GNL-----STAACRALSLAIQSS-----GQH------FVTL 724 (962)
Q Consensus 669 ~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~--------~~v-----~e~~c~~~~~~~~~l-----~~~------~~p~ 724 (962)
+++.+.++.+|+.+..+++ .+.+. +.+ ..+.|+++|+.+-.+ +.. ...+
T Consensus 680 ------~~f~~~~~~i~~~~l~~y~-~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~ 752 (1023)
T 4hat_C 680 ------ADFYPQLGHIYYNMLQLYR-AVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVL 752 (1023)
T ss_dssp ------GGGHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh
Confidence 5678888999999988886 34221 111 236788887764432 111 3458
Q ss_pred HHHHHHHHHHhhhhhc---CcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHH
Q 002126 725 LPQVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNF 801 (962)
Q Consensus 725 l~~~~~~l~~~f~~~~---~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l 801 (962)
+|++++.++..|..+. +++++|++.+++|+++|+ .+.+.+..++..+..+| +.++++ ++.++||++.+||+|
T Consensus 753 ~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~--~~~~~~~~il~~vf~~T-l~mi~~--~~~~~Pe~r~~ff~l 827 (1023)
T 4hat_C 753 VEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH--MIPQGVILILQSVFECT-LDMINK--DFTEYPEHRVEFYKL 827 (1023)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG--GCHHHHHHHHHHHHHHH-HHHHSS--CSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHH-HHHHhc--ccccChHHHHHHHHH
Confidence 8999999999998653 368999999999999996 46788889999999998 898884 899999999999999
Q ss_pred HHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhc
Q 002126 802 ASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHS 881 (962)
Q Consensus 802 ~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (962)
+.+++++||..++..+++.+..+++++++|++++||++..++++|+.+++...... ++ .+..++++++|
T Consensus 828 l~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~----~~-------~~~~~~f~~~~ 896 (1023)
T 4hat_C 828 LKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM----GN-------VPFANEFHKNY 896 (1023)
T ss_dssp HHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH----CS-------SHHHHHHHHHH
T ss_pred HHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhc----CC-------hHHHHHHHHHH
Confidence 99999999999998876788999999999999999999999999999999876531 11 25688999999
Q ss_pred cHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhcccch---------hhccchhHHHHHHHHHHh-hhhhh
Q 002126 882 GEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSG---------KAILSWESLQGWLHSAVS-LFLIL 947 (962)
Q Consensus 882 G~~Lv~~ll~~~~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~---------~~~~~~~~~~~Wl~~~l~-~~~~~ 947 (962)
+..++..+|..+.+..+++.+...+.+|+.|+.++..- .+.. ++......+++|+.+.|. .+|+.
T Consensus 897 ~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp~~ 971 (1023)
T 4hat_C 897 FFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDN-KISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHL 971 (1023)
T ss_dssp HHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTT-CCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcC-CcccccCCccccCCCCchHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999653320 1111 122445678999998887 44544
No 2
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=3.9e-84 Score=797.32 Aligned_cols=874 Identities=13% Similarity=0.169 Sum_probs=680.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHH
Q 002126 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (962)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~ 85 (962)
.+.++++|+++|++ +++.|++|++||++||++|+||..|..+|..+ .+.++|||||++|+++|+++|..+|+++
T Consensus 27 v~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s-----~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 27 INLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFS-----QNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---C-----CSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 56999999999965 67899999999999999999999999999763 3579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhcc
Q 002126 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (962)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (962)
+..||+.|++++.++..+ ++.+++|||.+++.++.+.+ .||+++.+++..+++ ++..+.+.|.+|+.|+
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~---~~~~~~~~L~IL~~L~ 177 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT---SESLCQNNMVILKLLS 177 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC---CHHHHHHHHHHHHHHH
Confidence 999999999999886543 37888999999999999976 699999999999875 3456788999999999
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhh
Q 002126 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (962)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~ 237 (962)
||+.+.++.+ ++..||.++++.|..+.+.|++++..++.... +.++...+|+|+.+|+. |++.+.+
T Consensus 178 EEV~d~~~~~--l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-------~~~lv~~~L~~L~~~~s-----WI~i~~i 243 (1073)
T 3gjx_A 178 EEVFDFSSGQ--ITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-------NAPLVHATLETLLRFLN-----WIPLGYI 243 (1073)
T ss_dssp HHHTTSHHHH--BCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred HHHHhccccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------CHHHHHHHHHHHHHHHH-----hcCHHHh
Confidence 9998654333 67889999999999999999999999987642 34577778888888887 7788888
Q ss_pred hhcchHHHH-HHhcCCCCcHHHHHHHHHHHHhcCC-Chh---HHHHhhhh-----------hhHHhhhhhhhccCcHhHH
Q 002126 238 AAHPLLNFV-FNSLQVQSSFDVAIEVLVELVGRHE-GLP---QALLCRVP-----------FLKELLLLPALTDGDEKVI 301 (962)
Q Consensus 238 ~~~~ll~~~-~~~L~~~~~~~~a~~~l~eil~~~~-~~~---~~l~~~~~-----------~l~~~~~~~~~~~~d~d~~ 301 (962)
.++++++.+ +..|.+++++++|++||++++++.- ++. ..++..++ .+.+.|. ...++|.+.+
T Consensus 244 ~~~~ll~~L~~~~L~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~--~~~~~d~e~~ 321 (1073)
T 3gjx_A 244 FETKLISTLIYKFLNVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYS--NGKDDEQNFI 321 (1073)
T ss_dssp HSSSHHHHHHHHTSSSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHH--TCCTTHHHHH
T ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHh--ccchhhHHHH
Confidence 889999988 7999999999999999999999742 222 22333332 2233332 1245677899
Q ss_pred hhHHHHHHHHhHhhhHHHHhcCh---hHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchh---h-------
Q 002126 302 GGLACLMSEIGQAAPSLIVEASP---EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS---I------- 368 (962)
Q Consensus 302 ~~l~~l~~~~~e~~~~~l~~~~~---~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~---~------- 368 (962)
+++|++|+++|++|...|.++|+ .....+++|+.|+++| |++++++||+|||.|.++++..... .
T Consensus 322 ~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~--d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~ 399 (1073)
T 3gjx_A 322 QNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE--ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGS 399 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 99999999999999999988754 3456788999999998 8999999999999999998743210 0
Q ss_pred -hhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHH---------HHHHHHHHhcCcHHHHH
Q 002126 369 -AKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLV---------ELLVDICQLLRSATFIQ 438 (962)
Q Consensus 369 -~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~---------d~l~~~~~il~~~~~l~ 438 (962)
.++.+.....|+|+|.+|+.+++.||.+|+|.+. .+.|+.|-|++||++++ |++.+++. ++.+.++.
T Consensus 400 ~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i--~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~-l~~~~~~~ 476 (1073)
T 3gjx_A 400 QHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLV--VENDQGEVVREFMKDTDSINLYKNMRETLVYLTH-LDYVDTEI 476 (1073)
T ss_dssp CCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEE--EECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHH-HCHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCccccc--cCcccchHHHHHHhhcchHHHHHHHHHHHHHHhc-CCHHHHHH
Confidence 0011235667999999999999999999998432 12244455666665544 44444333 34455666
Q ss_pred HHHHhhhcC-CCCCCCchhhhHHHHHHHhhhhccccC-CCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhh
Q 002126 439 KVFFGSWGS-ANVPIPWKEVETKLFALNVVSEVVLQE-GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSY 516 (962)
Q Consensus 439 ~~~~~l~~~-~~~~~~W~~~Ea~Lf~l~~iae~i~~~-~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y 516 (962)
.+++.+... .+..++|+.+||+||++++||+++.++ ++.. +|.+++.|..+|.+++.+. .++++.+++|+++|+|
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~-Lp~vi~~Ll~L~e~~~~kd--~k~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRF-LVTVIKDLLGLCEQKRGKD--NKAIIASNIMYIVGQY 553 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHHHHSCSHH--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccch-HHHHHHHHhcccccccccc--hhHHHHHHHHHHHhhh
Confidence 666665322 223678999999999999999888753 3323 7888888888988774321 1335666778999999
Q ss_pred HHHHHhChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCCC------ccHHHHHHHHHHHHhcCCChhhH
Q 002126 517 SKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDEP------SNLEILMWIGEALEKRHLPLEDE 588 (962)
Q Consensus 517 s~wl~~~p~~L~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~p------~~~~~l~~~~~~l~~~~l~~~~~ 588 (962)
++|++.||+||+++++++++++++ +.++.+||.||.+||++|+++++.. ++++.+.+.+.. ....++.++.
T Consensus 554 ~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~-~~~~l~~~~~ 632 (1073)
T 3gjx_A 554 PRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT-IICDLQPQQV 632 (1073)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHH-HHTTCCHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHH-HHHhcCHHHH
Confidence 999999999999999999999984 6799999999999999999988542 133433333333 2467899999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCC
Q 002126 589 EEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLP 668 (962)
Q Consensus 589 ~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~ 668 (962)
..+++|+|.+++++|++..+..+++.++.|..++|+++++++.. ++....+ ...+++|+.+++... ..+
T Consensus 633 ~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~-----~~~~~~d-----~~~i~~l~~il~~n~-~v~ 701 (1073)
T 3gjx_A 633 HTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATK-----NVDILKD-----PETVKQLGSILKTNV-RAC 701 (1073)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-----CGGGGGC-----HHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc-----CchhccC-----hHHHHHHHHHHhhhH-HHH
Confidence 99999999999999998877899999999999999999975421 1111000 112455555555322 111
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHhhhccc--------hH-----HHHHHHHHHHHHHHhh-----hhh------hHhh
Q 002126 669 TNPAGDDPIFALLRVFWPMLEKLFRSEHMEN--------GN-----LSTAACRALSLAIQSS-----GQH------FVTL 724 (962)
Q Consensus 669 ~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~--------~~-----v~e~~c~~~~~~~~~l-----~~~------~~p~ 724 (962)
. +..+++.+.+..+||-+..+++ .+.+. +. ...+.||++|+.+-.+ +.. ...+
T Consensus 702 ~--~~g~~f~~~~~~i~~~~l~~y~-~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~ 778 (1073)
T 3gjx_A 702 K--AVGHPFVIQLGRIYLDMLNVYK-CLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENF 778 (1073)
T ss_dssp H--HHCGGGHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHT
T ss_pred h--hcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh
Confidence 1 1237788999999998888876 33221 11 3458899999776432 222 4568
Q ss_pred HHHHHHHHHHhhhhhc---CcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHH
Q 002126 725 LPQVLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNF 801 (962)
Q Consensus 725 l~~~~~~l~~~f~~~~---~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l 801 (962)
+||+++.++..|..+. +++++|++.+.+|.++|. ...+.+..+++.+.++| +.++.. ++.++||++.+||+|
T Consensus 779 i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~--~~~~~~~~il~~vf~~T-l~mi~~--~f~~~Pe~r~~ff~l 853 (1073)
T 3gjx_A 779 VPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG--HITAEIPQIFDAVFECT-LNMINK--DFEEYPEHRTNFFLL 853 (1073)
T ss_dssp SHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGG--GTGGGHHHHHHHHHHHH-HHHHSS--CSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHH-HHHHhC--CcccCcHHHHHHHHH
Confidence 8999999999998642 689999999999999997 45678888999999998 888875 899999999999999
Q ss_pred HHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhc
Q 002126 802 ASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHS 881 (962)
Q Consensus 802 ~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (962)
+.++..+|+..|+..|++.+..+++++++|+++++|++..++++++.++++.... . .+..++++++|
T Consensus 854 l~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~------~-------~~~~~~F~~~~ 920 (1073)
T 3gjx_A 854 LQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ------E-------EAAAQSFYQTY 920 (1073)
T ss_dssp HHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT------C-------HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc------C-------hHHHHHHHHHH
Confidence 9999999999999887678899999999999999999999999999999977532 0 24688999999
Q ss_pred cHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhcccch--hhcc---chhHHHHHHHHHH-hhhhh
Q 002126 882 GEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSG--KAIL---SWESLQGWLHSAV-SLFLI 946 (962)
Q Consensus 882 G~~Lv~~ll~~~~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~--~~~~---~~~~~~~Wl~~~l-~~~~~ 946 (962)
+..++..+|..+.+..++|++...+.+|+.|+.+...- .+.. +... ....+++|+.+.| .++|+
T Consensus 921 ~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~-~i~~~l~~~~~~~n~~~~~~~~~~~l~~~fp~ 990 (1073)
T 3gjx_A 921 FCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEG-KISTPLNPGNPVNNQMFIQDYVANLLKSAFPH 990 (1073)
T ss_dssp HHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTT-CCSCSSSCTTTTCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcC-CccccccccCCCccHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999653320 0111 1111 3456899999888 44444
No 3
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=7.2e-85 Score=829.52 Aligned_cols=867 Identities=16% Similarity=0.264 Sum_probs=671.2
Q ss_pred CCchHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCC
Q 002126 1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY 80 (962)
Q Consensus 1 ~~~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~ 80 (962)
|+....++|+++++++| ++|++.|++|++||++||++|++|.+|.+||..+ .+.++|||||++|++||+++|.+
T Consensus 1 m~~~d~~~l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~-----~~~~vr~~aa~~L~~~i~~~w~~ 74 (971)
T 2x1g_F 1 MEPIDIARLEEAVVSFY-RSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLG-----KSQEVQFFGAITLHSKLMKHWHE 74 (971)
T ss_dssp ----------CTHHHHH-TSTTTC----CHHHHHTTTSTHHHHHHHHHTCTT-----SCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CChhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHccHhh
Confidence 55344678999999988 4688899999999999999999999999999763 35799999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc-cCCchHHHHHHHhhcccC----CCcchHHHHHHHhh
Q 002126 81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-EHGKPIEKLFYSLQNLQS----QDNGNMAVLEMLTV 155 (962)
Q Consensus 81 l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~-~W~~~i~~li~~~~~~~~----~~~~~~~lL~iL~~ 155 (962)
+|++++..||+.|++++.+..++++.|++|+|.+++.++.+.+ .||+++.+++..+++... ++......+++|+.
T Consensus 75 l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 75 VPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTA 154 (971)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 9999999999999999998777789999999999999999988 899999999999875210 12356799999999
Q ss_pred cccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccch
Q 002126 156 LPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235 (962)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~ 235 (962)
+|||+...+ +..+|..+++.+..+.+.|++++.+++....+++......++...+++|+.+|+.++ |+|.+
T Consensus 155 l~EEi~~~~------~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~---~ip~~ 225 (971)
T 2x1g_F 155 IPEEAQVIH------TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI---GYTIE 225 (971)
T ss_dssp HHHHHHHCC------CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS---CCCGG
T ss_pred hHHHHhccC------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC---CcCcc
Confidence 999986321 345777888889899999999999888764321100001268899999999999985 67776
Q ss_pred hhhhcchHHHHHHhc------------------CCCCcHHHHHHHHHHHHhcCC-----ChhHHHHhhhhhhHHhhhhhh
Q 002126 236 SLAAHPLLNFVFNSL------------------QVQSSFDVAIEVLVELVGRHE-----GLPQALLCRVPFLKELLLLPA 292 (962)
Q Consensus 236 ~~~~~~ll~~~~~~L------------------~~~~~~~~a~~~l~eil~~~~-----~~~~~l~~~~~~l~~~~~~~~ 292 (962)
..+++++.+|. | .+++.+++|++|+.++++..+ ++...++|.++++.+.+. .+
T Consensus 226 --~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 301 (971)
T 2x1g_F 226 --GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEIT-KT 301 (971)
T ss_dssp --GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred --ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHH-HH
Confidence 56789999998 6 567889999999999998643 245667788877665443 24
Q ss_pred hccCcH---hHHhhHHHHHHHHhHhhhHHHH----h----cChhHHHHHHHHHhcccCCC---CCchhhhhhHHHHHHHH
Q 002126 293 LTDGDE---KVIGGLACLMSEIGQAAPSLIV----E----ASPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLA 358 (962)
Q Consensus 293 ~~~~d~---d~~~~l~~l~~~~~e~~~~~l~----~----~~~~~~~ll~~ll~~~~~p~---~d~~v~~~t~~FW~~l~ 358 (962)
+.++|. +....+|++++.+++.+...+. + .++++..+++.|+.++.+|| .|++++..+++||+.+.
T Consensus 302 ~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~ 381 (971)
T 2x1g_F 302 EWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQ 381 (971)
T ss_dssp HSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHH
Confidence 455664 8899999999999999988876 3 23466789999999998854 26789999999999999
Q ss_pred HHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHH
Q 002126 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQ 438 (962)
Q Consensus 359 e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~ 438 (962)
+.+.+++.+. +.......++|+|.+++.+++.|+.||++...++|+.+|+++|.+||+.++|++.+++.++|. .++.
T Consensus 382 ~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~-~~l~ 458 (971)
T 2x1g_F 382 DEVFAMSNDE--QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND-YILE 458 (971)
T ss_dssp HHHHC---------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHH
T ss_pred HHHHhccccc--chHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHH
Confidence 8654332110 113455788999999999999999999874222566677889999999999999999999984 3455
Q ss_pred HHHHhhh----cCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccC-chhhhhhHHHHHHHHHHHHH
Q 002126 439 KVFFGSW----GSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSAS-RSEELKGFMHIVYRSLADVI 513 (962)
Q Consensus 439 ~~~~~l~----~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~-~~~~~~~~~~v~~~t~~~~i 513 (962)
.++..+. .....+.+|+..||++|+++++++.+.++.. ..++.+++++..++.. +++ .||.++ ++++
T Consensus 459 ~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~~l~~l~~~d~~~------~vr~~a-~~~l 530 (971)
T 2x1g_F 459 ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMRVLAEIPYEKLNV------KLLGTA-LETM 530 (971)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTTTSCH------HHHHHH-HHHH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHHHHHhcCccccCH------HHHHHH-HHHH
Confidence 4443321 1001246899999999999999999986443 2367777777777732 221 267766 5999
Q ss_pred HhhHHHHHhChhchHHHHHHHHHhcccCchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHH-HHHHhcCCChhhHHHHH
Q 002126 514 GSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVV 592 (962)
Q Consensus 514 g~ys~wl~~~p~~L~~vL~~l~~~l~~~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~-~~l~~~~l~~~~~~~l~ 592 (962)
|+|++|+..||+|++++++++++++. |.++.+|+.||.+||++|+..+. | +++.+++.+ ..+.++.++.+++..++
T Consensus 531 ~~~~~~l~~~~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~-p-~~~~ll~~l~~~l~~~~~~~~~~~~~~ 607 (971)
T 2x1g_F 531 GSYCNWLMENPAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLK-P-YADPLLNACHASLNTGRMKNSDSVRLM 607 (971)
T ss_dssp HHTHHHHC----CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHH-H-HHHHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhcc-c-cHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 99999999999999999999999995 88999999999999999999885 3 666555544 44555668899999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCC
Q 002126 593 GAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPA 672 (962)
Q Consensus 593 eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~ 672 (962)
+++|.+++++|.++ ..+++..++.|+++.++++.+.... ++.. .......+++|+.+++.+....+.+.+
T Consensus 608 ~ai~~i~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~-----~~~~----~~~~~~~l~~L~~~~~~l~~~~~~~~~ 677 (971)
T 2x1g_F 608 FSIGKLMSLLRPEE-IPKYLDIIVSPCFEELQAICQADSK-----TPAA----RIRTIFRLNMISTLFSSLNTDVDEQAT 677 (971)
T ss_dssp HHHHHHHHTSCTTH-HHHHHHHHHHHHHHHHHHHHTC--------CHHH----HHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-----Chhh----HHHHHHHHHHHHHHHhhcCCCcCcccc
Confidence 99999999998444 6899999999999999998765421 1111 123566788888888887653321110
Q ss_pred ---CCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHH
Q 002126 673 ---GDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTA 749 (962)
Q Consensus 673 ---~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~ 749 (962)
..+|+.++++++||++..++. .+.++.+++|++|++++++++.+|.++.|++|++++.+...|..+ +++|+|+++
T Consensus 678 ~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~-~~~~~l~l~ 755 (971)
T 2x1g_F 678 DQPIVQPVLLVMQRTMPIFKRIAE-MWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR-CCAPTLEIS 755 (971)
T ss_dssp ------CCHHHHHTTHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC---CCHHHHHHH
T ss_pred cccCCCchHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC-CchHHHHHH
Confidence 157889999999999999998 588889999999999999999999999999999999999999875 789999999
Q ss_pred HHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcC--CCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhc-hHHHHH
Q 002126 750 SVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSS--YICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL-LEVSFQ 826 (962)
Q Consensus 750 ~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~--~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~-l~~~l~ 826 (962)
+.++..||.++.+.+.+.+++..++..+ +..+.+. .+++++||++++||+|+.++++++|..++++ +. ++.+++
T Consensus 756 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s--~~~l~~i~~ 832 (971)
T 2x1g_F 756 KTAIVMFFKDEGCKPLMQQLLREFIQHS-FKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDK--TLAYDRLVF 832 (971)
T ss_dssp HHHHTTCCC-----HHHHHHHHHHHHHH-HHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCT--TSCHHHHHH
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHH-HHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCC--cccHHHHHH
Confidence 9999999997777888889888888876 6666652 2566899999999999999999999999986 56 899999
Q ss_pred HHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHH
Q 002126 827 KAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCA 906 (962)
Q Consensus 827 ~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rs~~~~~~ 906 (962)
+++.+++.+|+++.+++++||+.+++.... .+.+++++.++|+.|+..++.+++|++||+.++.++
T Consensus 833 ~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~--------------~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a 898 (971)
T 2x1g_F 833 YAQRGMTLPESGAIRNSIQFLTHFVMQSRN--------------HAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFA 898 (971)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhcCCc--------------hHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHH
Confidence 999999999999999999999999987321 256899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccchhhccchhHHHHHHHHHHh
Q 002126 907 TILQQLAAICSISERTSGKAILSWESLQGWLHSAVS 942 (962)
Q Consensus 907 ~iL~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~l~ 942 (962)
++|+.|. .+||+.++.||.+++.
T Consensus 899 ~~l~~l~-------------~~~~~~~~~~l~~~l~ 921 (971)
T 2x1g_F 899 DILLAMN-------------RKYAAEMAVWMKSLMS 921 (971)
T ss_dssp HHHHHHH-------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-------------HHCcHHHHHHHHHHhc
Confidence 9999999 7899999999999996
No 4
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=7.8e-81 Score=775.24 Aligned_cols=853 Identities=12% Similarity=0.130 Sum_probs=631.2
Q ss_pred HHHHHHHHHH-hcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChH
Q 002126 6 QIKVAQAVHV-LNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (962)
Q Consensus 6 ~~~v~~ai~~-ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e 84 (962)
.++|.+||+. +|.++|++.|++|++||++||++|+||++|..+|..+. ..+.++|||||+||++||+ ++|++
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~---~~~~~vr~fa~~~L~~~I~----~l~~e 77 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKT---KYKPSTRLICLQTLSEKVR----EWNNE 77 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTT---TSCHHHHHHHHHHHHHHHH----HCCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHH----hCChh
Confidence 6799999965 55456999999999999999999999999999997643 1257999999999999999 79999
Q ss_pred ----HHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCC-cchHHHHHHHhh
Q 002126 85 ----AKDALLNALLVAAKRFS--SGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQD-NGNMAVLEMLTV 155 (962)
Q Consensus 85 ----~~~~Lr~~Ll~~l~~~~--~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~-~~~~~lL~iL~~ 155 (962)
++..||+.|++++.+.. .++++|++|||.+++.++++.+ .||+++.+++..++++ ++ .....+|++|..
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~--~~~~~~~~~LriL~~ 155 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS--SQSEFSNFYLKVLLS 155 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH--CCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC--ChhHHHHHHHHHHHH
Confidence 99999999999999854 4689999999999999999985 6999999999999863 22 233455666666
Q ss_pred cccccccccccccCCCHHHHHHHHHHHHhh-----hhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccc
Q 002126 156 LPEEVIDSQASDCNISSAHRSQYGQELLSH-----TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (962)
Q Consensus 156 l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~-----~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~ 230 (962)
++||+.+.+..+......|+..+++.+..+ .+.++.+|.++... .+.++...+|+|+.+|+.
T Consensus 156 i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--------~~~~l~~~~L~~l~s~i~----- 222 (980)
T 3ibv_A 156 IGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--------KNYGTVGLCLQVYAQWVS----- 222 (980)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHTT-----
T ss_pred hHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHh-----
Confidence 669998653211111124555667777775 44555555544331 134688999999999999
Q ss_pred cccchhhhhcchHHHHHHhcCCCCcHHHHHHHHHHHHhcCCChhH--HHHhhhhhhHHhhhhhhhc-cCcHhHHhhHHHH
Q 002126 231 EISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ--ALLCRVPFLKELLLLPALT-DGDEKVIGGLACL 307 (962)
Q Consensus 231 ~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~--~l~~~~~~l~~~~~~~~~~-~~d~d~~~~l~~l 307 (962)
|+|.+.+.++++++.+|+.|.+++++++|++|++++++++++-.. .++.. +++.+.+. .... ++|.|..+++|++
T Consensus 223 wi~~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~-l~L~~~~~-~l~~~~~D~d~~~~la~L 300 (980)
T 3ibv_A 223 WININLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNI-LNLNLFFS-KSQEQSTDPNFDEHVAKL 300 (980)
T ss_dssp TSCHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-HHHHHHHC-C-----CCHHHHHHHHHH
T ss_pred hcCHHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHHH-HhHHHHHH-HHhcccccHHHHHHHHHH
Confidence 889998888999999999999999999999999999999876332 22222 35555554 1222 6889999999999
Q ss_pred HHHHhHhhhHHHHhcC------------hhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhh
Q 002126 308 MSEIGQAAPSLIVEAS------------PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHV 375 (962)
Q Consensus 308 ~~~~~e~~~~~l~~~~------------~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~ 375 (962)
++++|+.+... .+.+ +.+..+++++|.|++|| +++|+..||+||+.+.+.+...+ .+...
T Consensus 301 ~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~-----~~~~~ 372 (980)
T 3ibv_A 301 INAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKES-----SSKEL 372 (980)
T ss_dssp HHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHT-----TSCCC
T ss_pred HHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhcc-----ccccc
Confidence 99999999998 6655 45568999999999998 68999999999998776542111 01234
Q ss_pred hhhhHHHHHHHHHHHHHHhccCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhh----cC--C
Q 002126 376 EDMFFSVFSALLDALLLRAQVDES-SFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSW----GS--A 448 (962)
Q Consensus 376 ~~~~~~~~~~L~~~l~~k~~~p~~-~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~----~~--~ 448 (962)
.+.++++|.+|++++++||+||++ +|.+++|.||+++|.+||++++ ++.+++.++|++.++.++++.+. .. .
T Consensus 373 ~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~ 451 (980)
T 3ibv_A 373 SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATL 451 (980)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999987 4433344577889999999999 99999999999887775444321 11 1
Q ss_pred CCCCCchhhhHHHHHHHhhhhccccC------CCccchhHHHHHHHHhcc-----CchhhhhhHHHHHHHHHHHHHHhhH
Q 002126 449 NVPIPWKEVETKLFALNVVSEVVLQE------GQAFDFSVIMQLVAVLSA-----SRSEELKGFMHIVYRSLADVIGSYS 517 (962)
Q Consensus 449 ~~~~~W~~~Ea~Lf~l~~iae~i~~~------~~~~~l~~i~~~l~~l~~-----~~~~~~~~~~~v~~~t~~~~ig~ys 517 (962)
..+.+|+++||+||+++++||++... ++ ..+|.+++++..+.+ ++++ .|++++ ++++|||+
T Consensus 452 ~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~-~~lp~l~~ll~~ll~s~i~~~~hp------~V~~~~-~~~l~rys 523 (980)
T 3ibv_A 452 SPENSWQLIEFALYETYIFGEGLRGPDAFFNEVD-KSPTVLSQILALVTTSQVCRHPHP------LVQLLY-MEILVRYA 523 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSS-CCBCHHHHHHHHHHHSSTTTCCCH------HHHHHH-HHHHHHTG
T ss_pred cCCCCHHHHHHHHHHHHHHHhhccccccccCccc-chhHHHHHHHHHHHhCCCCCCCCH------HHHHHH-HHHHHHHH
Confidence 12457999999999999999998741 12 236888888877622 3332 267766 69999999
Q ss_pred HHHHhChhchHHHHHHHHH--hcccC--chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHH-HHhcCC---------
Q 002126 518 KWISAFQTNARPLLLFLAA--GISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEA-LEKRHL--------- 583 (962)
Q Consensus 518 ~wl~~~p~~L~~vL~~l~~--~l~~~--~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~-l~~~~l--------- 583 (962)
+||..||+|++++|+++++ |++++ +++.+|+++|++||++|+++|. | +.+.+++.++. +.....
T Consensus 524 ~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~-~-~~~~il~~l~~lL~~~~~~~~~~~~~~ 601 (980)
T 3ibv_A 524 SFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV-N-YTESSLAMLGDLLNISVSPVTDMDAPV 601 (980)
T ss_dssp GGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS-S-SHHHHHHHTTGGGCCCCCCCCC--CSS
T ss_pred HHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh-h-HHHHHHHHHHHhhcCcCCCCCcccccc
Confidence 9999999999999999999 99875 5999999999999999999986 4 55555544433 321111
Q ss_pred ----------ChhhHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHH
Q 002126 584 ----------PLEDEEEVVGAISLILGSVS-NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRG 652 (962)
Q Consensus 584 ----------~~~~~~~l~eai~~vi~~lp-~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 652 (962)
..+++..++||+|.+++..+ +++.+..+++.++.|++++++++++...... .... .+. +.
T Consensus 602 ~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~----~~~~--~i~---~~ 672 (980)
T 3ibv_A 602 PTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL----ENII--SVY---CS 672 (980)
T ss_dssp CCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC------CHHH--HHH---HH
T ss_pred cchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc----cHHH--HHH---HH
Confidence 13468999999999998864 2344789999999999999999997653211 1111 222 33
Q ss_pred HHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHH
Q 002126 653 LYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCL 732 (962)
Q Consensus 653 l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l 732 (962)
+..++++.+++... +...+|+..+++++|+++..++. +|+++..|+|++|.++++++.++|.++.|++|++++.+
T Consensus 673 i~al~~lakgf~~~----~~~~~p~~~~f~~~~~~il~~l~-~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~l 747 (980)
T 3ibv_A 673 LMAIGNFAKGFPAR----GSEEVAWLASFNKASDEIFLILD-RMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISIL 747 (980)
T ss_dssp HHHHHHHHHTSCSC----C-CCCSHHHHHHHHHHHHHHHHH-HSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHH
T ss_pred HHHHHHHhccCCcc----cCCCCcHHHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHH
Confidence 33344444443321 12347799999999999999998 69999999999999999999999999999999999999
Q ss_pred HHhhhhhcCcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCC----CCCCCCchHHHHHHHHHHHHHh
Q 002126 733 STNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSY----ICDQEPDLVEAYTNFASTFVRT 808 (962)
Q Consensus 733 ~~~f~~~~~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~----~~~~~pD~~~~~f~l~~~~l~~ 808 (962)
+..|..+ ++++||++++++|++||++ +.+.+.+++..+.+++ +..+.+.. .+++.+|+.++||.|+..++++
T Consensus 748 l~~~~~~-e~~~fL~l~~qli~~f~~~--~~~~l~~ll~~l~~~i-f~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~ 823 (980)
T 3ibv_A 748 LNSIDMN-ELVDVLSFISQLIHIYKDN--MMEITNRMLPTLLMRI-FSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNK 823 (980)
T ss_dssp HHHCCTT-THHHHHHHHHHHHHHTTTT--SHHHHHHHHHHHHHHH-HHHTTC----CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998865 8999999999999999985 7889999999999988 77777531 1235688999999999999996
Q ss_pred h-hHHHHhhc-hhchHHHHHHHHH-hhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHH
Q 002126 809 S-RKEVLAAS-GALLEVSFQKAAI-CCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGL 885 (962)
Q Consensus 809 ~-p~~~l~~~-~~~l~~~l~~~l~-~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L 885 (962)
. +.++++.. .+.++.++...+. +.+.+|+.+.|+|+.|++++++.-++. +. -+...+++-+ --.+
T Consensus 824 ~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~-----~~------~~gf~~f~~~-~~~~ 891 (980)
T 3ibv_A 824 GFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGK-----DG------IAGFENFTLS-LTPL 891 (980)
T ss_dssp TCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC------------------CCHHHHHHH-HHHH
T ss_pred CchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCC-----Cc------chHHHHHHHH-HHHH
Confidence 4 77776542 3567766666553 345789999999999999999764321 10 1123333322 1111
Q ss_pred HHHHH----HHhcCCCcccchhhHHHHHHHHHHHhhhhcccchhhccchhHHHHHHHHH-Hhhh
Q 002126 886 VSNVV----YALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSA-VSLF 944 (962)
Q Consensus 886 v~~ll----~~~~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~~~~~~~~~~~~Wl~~~-l~~~ 944 (962)
+..+. ..+.++..+-.+..++.+++.+. .++.+++-++|.+. |+++
T Consensus 892 ~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~-------------~~~g~~~~~~l~~~~lp~~ 942 (980)
T 3ibv_A 892 CFEMPVNPNFNTRDGQSLVVLGELAGLQKIIL-------------EKLGDIYKSYLVTVYFPTV 942 (980)
T ss_dssp HHHGGGC----------CHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHTTTTC-
T ss_pred HHHhhcCCCCChhhHHHHHHHHHHHHHHHHHH-------------HhcCHHHHHHHHHhcCCcC
Confidence 11111 11334455556667777777777 35556777888543 4443
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=7.4e-80 Score=784.07 Aligned_cols=854 Identities=21% Similarity=0.340 Sum_probs=688.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChH
Q 002126 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSA 84 (962)
Q Consensus 5 ~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e 84 (962)
..++|+++++++|+++|++.|++|++||++||++|++|.+|..||..+ .+.++|||||++|+++|+++|..+|++
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~-----~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPD-----KVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTT-----SCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC-----CchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 577999999999988899999999999999999999999999999753 357999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccC---CCcchHHHHHHHhhcccc
Q 002126 85 AKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQS---QDNGNMAVLEMLTVLPEE 159 (962)
Q Consensus 85 ~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~---~~~~~~~lL~iL~~l~EE 159 (962)
++..||+.|++++..+.++++.|++|+|.+++.++.+.+ .||+++++++..+++..+ ++......+.+|+.++||
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee 176 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEE 176 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHH
Confidence 999999999999998766789999999999999999965 699999999998865111 223568999999999999
Q ss_pred cccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhh
Q 002126 160 VIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAA 239 (962)
Q Consensus 160 ~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~ 239 (962)
+.+.+ .+..+|..+++.+..+.+.|++++.+++....+ +..+...+++|+.+|++.+ .+. ...
T Consensus 177 ~~~~~-----~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~------~~~~~~~~l~~l~~wi~~~----~~~--~~~ 239 (963)
T 2x19_B 177 FQTSR-----LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSS------PSCVRQKVLKCFSSWVQLE----VPL--QDC 239 (963)
T ss_dssp HTTCC-----C---------CCSGGGHHHHHHHHHHHHSCTTC------CHHHHHHHHHHHHHHHTSS----CCG--GGT
T ss_pred Hhccc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHHHHcCC----CCc--ccc
Confidence 86432 245677777777888899999999988865321 1247889999999999854 222 235
Q ss_pred cchHHHHHHhcCCCCcHHHHHHHHHHHHhcCC--C---hhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHh
Q 002126 240 HPLLNFVFNSLQVQSSFDVAIEVLVELVGRHE--G---LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA 314 (962)
Q Consensus 240 ~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~--~---~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~ 314 (962)
+++++.+|+.+.+++.++.|++|+.+++..+. + ....+++.++...+.+. .++.++|.+..+++|++|+++++.
T Consensus 240 ~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~d~~~~~~~~~l~~~~~~~ 318 (963)
T 2x19_B 240 EALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLR-QAVQNGDMETSHGICRIAVALGEN 318 (963)
T ss_dssp HHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHH-HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHH-HHHHCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999998653 1 33445666666544433 345567889999999999999999
Q ss_pred hhHHHHhc---ChhHHHHHHHHHhcccCCC---CCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHH
Q 002126 315 APSLIVEA---SPEALALADALLSCVAFPS---EDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLD 388 (962)
Q Consensus 315 ~~~~l~~~---~~~~~~ll~~ll~~~~~p~---~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 388 (962)
+...+.++ ++.+..++++|+.++.+|| .|++++..+++||+.+.+.+..++.. .++.....++|++.+++.
T Consensus 319 ~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~---~~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 319 HSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAE---KQAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH
Confidence 99888753 3567789999999999864 25678899999999999876544321 113456788999999999
Q ss_pred HHHHHhccCCCC-CCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhh---hcCCCCCCCchhhhHHHHHH
Q 002126 389 ALLLRAQVDESS-FNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGS---WGSANVPIPWKEVETKLFAL 464 (962)
Q Consensus 389 ~l~~k~~~p~~~-~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~l---~~~~~~~~~W~~~Ea~Lf~l 464 (962)
+++.||.||+++ +. +|+.|++++|++||++++|++.+++.+.|.+ ++..++..+ ......+.+|+..||++|++
T Consensus 396 ~ll~~~~~p~~~~~~-~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al 473 (963)
T 2x19_B 396 VLLHKAQFPSDEEYG-FWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHHHSCCCHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCccccc-CCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 999999998773 22 3555666789999999999999999999854 444443332 11111346899999999999
Q ss_pred HhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCchh
Q 002126 465 NVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSS 544 (962)
Q Consensus 465 ~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~~~ 544 (962)
+++++.+.+++.. .++.+++.+..++.. + +.++.++ ++++|+|++|+..||++++++++++++++++|.++
T Consensus 474 ~~i~~~~~~~~~~-~l~~l~~~l~~l~~~-~------~~vr~~~-~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~~~V~ 544 (963)
T 2x19_B 474 QSIAETIDVNYSD-VVPGLIGLIPRISIS-N------VQLADTV-MFTIGALSEWLADHPVMINSVLPLVLHALGNPELS 544 (963)
T ss_dssp HHHTTSCCSSCCS-HHHHHHHHGGGSCCC-S------HHHHHHH-HHHHHHTHHHHHHCHHHHTTTHHHHHHHTTCGGGH
T ss_pred HHHHhhcCchhhH-HHHHHHHHHHhCCCC-c------HHHHHHH-HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCchHH
Confidence 9999998764432 245555555555531 2 1256655 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCccHHHHHHHH-HHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Q 002126 545 NACASALRKICEDASALIDEPSNLEILMWIG-EALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAI 623 (962)
Q Consensus 545 ~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~-~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l 623 (962)
.+|+.||.+||++|+..+. | +++.+.+.. ..+.+..++.+.+..+++++|.++.++| ++...+++..++.|+.+.|
T Consensus 545 ~~A~~al~~l~~~~~~~l~-p-~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l 621 (963)
T 2x19_B 545 VSSVSTLKKICRECKYDLP-P-YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQL 621 (963)
T ss_dssp HHHHHHHHHHHHHTGGGCT-T-THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-h-hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886 4 666555544 4444456788999999999999999998 4446899999999999999
Q ss_pred HhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCC------------CCCCchHHHHHHHHHHHHHHH
Q 002126 624 GKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN------------PAGDDPIFALLRVFWPMLEKL 691 (962)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~------------~~~~~p~~~~~~~i~~~l~~i 691 (962)
+++.++.. ++... ......+++|+.+++.+....+.. +...+|+..+++.+||++..+
T Consensus 622 ~~~~~~~~------~~~~~----~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (963)
T 2x19_B 622 EKLAEEIP------NPSNK----LAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKV 691 (963)
T ss_dssp HHHHSSCS------CHHHH----HHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC------CHHHH----HHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99865321 22111 123456788888888776432110 123578899999999999999
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcCCCCccchHHHHHH
Q 002126 692 FRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFE 771 (962)
Q Consensus 692 ~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~ 771 (962)
+. .|.++.++.|.+|+++++++..+|.++.|++|++++.+...|..+ +.++++++++.++..||.++.+.+.+..++.
T Consensus 692 l~-~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~ 769 (963)
T 2x19_B 692 LS-KWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI-PQASALDLTRQLVHIFAHEPAHFPPIEALFL 769 (963)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTCTTTCHHHHHHHH
T ss_pred HH-hccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC-CccHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 98 598899999999999999999999999999999999999999875 7899999999999999987667777888888
Q ss_pred HHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhc-hHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 002126 772 RFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL-LEVSFQKAAICCTAMHRGAALAAMSYLSCF 850 (962)
Q Consensus 772 ~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~-l~~~l~~~l~~l~~~e~~~~~a~~~fl~~l 850 (962)
.+..++ +..+.. ++.++||++++||.|+.++++++|..++++ +. +..++++++.+++.+|+++.+++++||.++
T Consensus 770 ~~~~~~-l~~~~~--~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~--~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l 844 (963)
T 2x19_B 770 LVTSVT-LTLFQQ--GPRDHPDIVDSFMQLLAQALKRKPDLFLCE--RLDVKAVFQCAVLALKFPEAPTVKASCGFFTEL 844 (963)
T ss_dssp HHHHHH-HHHHHH--CTTTCHHHHHHHHHHHHHHHHHCGGGGGCT--TSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHhh--CcccCchHHHHHHHHHHHHHHhCcHHHcCC--cccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 777776 666663 567899999999999999999999998864 45 899999999999999999999999999999
Q ss_pred HhhhhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhcccchhhccch
Q 002126 851 LEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSW 930 (962)
Q Consensus 851 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~~~~~~~ 930 (962)
++.... ...+++++.++|+.|+..++.+++|..||+.++.++++|+.|+ .++|
T Consensus 845 ~~~~~~--------------~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~-------------~~~~ 897 (963)
T 2x19_B 845 LPRCGE--------------VESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALN-------------KHCF 897 (963)
T ss_dssp GGGTTS--------------SCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHH-------------HHSH
T ss_pred HhcCCC--------------hHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHH-------------HHCh
Confidence 976431 1357788999999999999999999999999999999999999 6899
Q ss_pred hHHHHHHHHHHh
Q 002126 931 ESLQGWLHSAVS 942 (962)
Q Consensus 931 ~~~~~Wl~~~l~ 942 (962)
+.+++|+.+++.
T Consensus 898 ~~~~~~l~~~l~ 909 (963)
T 2x19_B 898 SLLSMWIKEALQ 909 (963)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999999985
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1e-68 Score=683.24 Aligned_cols=858 Identities=14% Similarity=0.152 Sum_probs=633.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHH
Q 002126 6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA 85 (962)
Q Consensus 6 ~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~ 85 (962)
.+++.++++++|++ +++.|++|++||++||++|++|.+|..+|..+ .+.++|||||++|+++|+++|..+|+++
T Consensus 15 ~~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s-----~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 15 IALLDQVVSTFYQG-SGVQQKQAQEILTKFQDNPDAWQKADQILQFS-----TNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHC-----SCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhCchHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 66999999999954 56689999999999999999999999999763 3579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhcc
Q 002126 86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (962)
Q Consensus 86 ~~~Lr~~Ll~~l~~~~~~------~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (962)
+..||+.|++++.....+ ++.|++|+|.++|.++.+.+ .||+++++++..+++ ++......+.+|+.++
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~---~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc---ChHHHHHHHHHHHHHH
Confidence 999999999999876533 37899999999999999965 699999999999863 3345678999999999
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhh
Q 002126 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (962)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~ 237 (962)
||+.+.+.. .++..+|..+++.+..+.+.|+.++.+++.... +.+++..+++|+.+|+. |++.+.+
T Consensus 166 eev~~~~~~--~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~-------~~~~~~~aL~~l~~~l~-----wi~~~~~ 231 (1049)
T 3m1i_C 166 EEVFDFSAE--QMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS-------SSSLIVATLESLLRYLH-----WIPYRYI 231 (1049)
T ss_dssp HHHHTSCTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred HHHHHhcch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHh-----hCCHHHH
Confidence 999754322 256778888888888899999999998887542 34688999999999988 6777766
Q ss_pred hhcchHHHHH-HhcCCCCcHHHHHHHHHHHHhcCC-C----hhH---HHHhhhhh------------hHHhhhhhhhccC
Q 002126 238 AAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE-G----LPQ---ALLCRVPF------------LKELLLLPALTDG 296 (962)
Q Consensus 238 ~~~~ll~~~~-~~L~~~~~~~~a~~~l~eil~~~~-~----~~~---~l~~~~~~------------l~~~~~~~~~~~~ 296 (962)
..+++++.++ ..+.+++++++|++|++++++... + +.. .+++.++. +...+. ...++
T Consensus 232 ~~~~ll~~l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~--~~~~~ 309 (1049)
T 3m1i_C 232 YETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NANGN 309 (1049)
T ss_dssp HSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH--HTCTT
T ss_pred hhhhHHHHHHHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhc--cCCcc
Confidence 6788999999 566788999999999999998752 2 111 23343333 222221 12355
Q ss_pred cHhHHhhHHHHHHHHhHhhhHHHHhcC---hhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhh
Q 002126 297 DEKVIGGLACLMSEIGQAAPSLIVEAS---PEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK 373 (962)
Q Consensus 297 d~d~~~~l~~l~~~~~e~~~~~l~~~~---~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~ 373 (962)
|.+..+++|++|+++++.+...+.+.+ +....++++++.++.++ |.+++..+++||+.+.++++. .+
T Consensus 310 d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~--d~~v~~~~lefw~~l~~~l~~--------~~ 379 (1049)
T 3m1i_C 310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFY--------EP 379 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHH--------ST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHh--------ch
Confidence 777889999999999999998887632 24567899999999997 789999999999999987532 02
Q ss_pred hhhhhhHHHHHHHHHHHHHHhccCCCC-CCCCCCC------CCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhc
Q 002126 374 HVEDMFFSVFSALLDALLLRAQVDESS-FNDDGMV------DLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWG 446 (962)
Q Consensus 374 ~~~~~~~~~~~~L~~~l~~k~~~p~~~-~~~~~~~------d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~ 446 (962)
.....+++++.+|+.+++.||+||+|. |.++++. ++++|-..+|+.++|++..++.+.|. .++..++..+..
T Consensus 380 ~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~-~~l~~v~~~l~~ 458 (1049)
T 3m1i_C 380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI-DTEEIMISKLAR 458 (1049)
T ss_dssp TCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHH
Confidence 345678999999999999999998763 2111110 11122225677899999999876654 455554444322
Q ss_pred C-CCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh
Q 002126 447 S-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT 525 (962)
Q Consensus 447 ~-~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~ 525 (962)
. .+.+.+|+.+||++|+++++++.+.+......++.+++.+..++....... ..+ ++..++|+++|+|++|+..||+
T Consensus 459 ~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~-~~~-~v~~~~~~~lgry~~~~~~~~~ 536 (1049)
T 3m1i_C 459 QIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKD-NKA-VVASDIMYVVGQYPRFLKAHWN 536 (1049)
T ss_dssp HHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHH-HHH-HHHHHHHHHHHHCHHHHHHCHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcccc-chH-HHHHHHHHHHHHHHHHHHhHHH
Confidence 1 123578999999999999999987643211115777777777775421100 012 3333457999999999999999
Q ss_pred chHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhcccC-------CCccHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 002126 526 NARPLLLFLAAGISE--AVSSNACASALRKICEDASALID-------EPSNLEILMWIGEALEKRHLPLEDEEEVVGAIS 596 (962)
Q Consensus 526 ~L~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~-------~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~ 596 (962)
+|+++++++++++++ +.++.+||.||.+||++|+..+. .| +++.+.+.+..+.. .++.++...++||+|
T Consensus 537 ~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p-~~~~il~~l~~~~~-~~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP-FIQTIIRDIQKTTA-DLQPQQVHTFYKACG 614 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC-HHHHHHHTHHHHHT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc-HHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 999999999999987 56999999999999999998763 12 55555554433332 478888999999999
Q ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCC-CCCCCchhhHHHhHHHHHHHHhhhhhcccccccCC-------
Q 002126 597 LILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNH-SLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLP------- 668 (962)
Q Consensus 597 ~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~------- 668 (962)
.++++.|+++....++..++.|++++|++++.+...+ +...+++.. ......+.++..+.+.+...+.
T Consensus 615 ~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~l~~~l~~~~~~~~~l~~~f~p~~~~i~ 690 (1049)
T 3m1i_C 615 IIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETV----KIIANIIKTNVAVCTSMGADFYPQLGHIY 690 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHH----HHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999656678999999999999999988653211 111111111 1112223333333322221110
Q ss_pred ---------------------CCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHH
Q 002126 669 ---------------------TNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQ 727 (962)
Q Consensus 669 ---------------------~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~ 727 (962)
......+|+...++.+||.+..++. .|..+.++. +..+.|++|+
T Consensus 691 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~-~~~~~~~~l--------------~~~~~~~~~~ 755 (1049)
T 3m1i_C 691 YNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVE-TYISKARNL--------------DDVVKVLVEP 755 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHH-HHHHHCSCH--------------HHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHH-HHHHhCCCH--------------HHHHHHHHHH
Confidence 0000123444444444444444444 233322222 2235688999
Q ss_pred HHHHHHHhhhhhcCcch-----HHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHH
Q 002126 728 VLDCLSTNFVSFQNHEC-----YIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFA 802 (962)
Q Consensus 728 ~~~~l~~~f~~~~~~~~-----~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~ 802 (962)
+++.++..|.+ ++++ ++++++.++..+|+ .+.+.+..++..+.+++ +.++. .+++++||++++||.|+
T Consensus 756 ~l~~ll~~~~~--~~~~~~~~~~l~l~~~ii~~~~~--~~~~~l~~i~~~l~~~~-~~~i~--~~~~~~pd~~~~~f~ll 828 (1049)
T 3m1i_C 756 LLNAVLEDYMN--NVPDARDAEVLNCMTTVVEKVGH--MIPQGVILILQSVFECT-LDMIN--KDFTEYPEHRVEFYKLL 828 (1049)
T ss_dssp HHHHHHHHHHH--SCGGGCCTHHHHHHHHHHHHHGG--GCHHHHHHHHHHHHHHH-HHHHS--SCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCcccccHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHH-HHHHh--cchhhCHHHHHHHHHHH
Confidence 99999999974 3444 99999999999994 45567778888888887 77776 36788999999999999
Q ss_pred HHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhcc
Q 002126 803 STFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSG 882 (962)
Q Consensus 803 ~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 882 (962)
.+++++||..+++.++..+..++++++++++.+|+++.+++++||.+++++.... .+ .+..+++++++|
T Consensus 829 ~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~----~~-------~~~~~~f~~~~~ 897 (1049)
T 3m1i_C 829 KVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM----GN-------VPFANEFHKNYF 897 (1049)
T ss_dssp HHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHS----CS-------CHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhc----CC-------hHHHHHHHHHHH
Confidence 9999999999987443558899999999999999999999999999999886531 11 144778899999
Q ss_pred HHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhcccchhh---------ccchhHHHHHHHHHH
Q 002126 883 EGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKA---------ILSWESLQGWLHSAV 941 (962)
Q Consensus 883 ~~Lv~~ll~~~~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~~~---------~~~~~~~~~Wl~~~l 941 (962)
..|+..++.+++|..+||.++.++++|++|+.+.. ...++.+. ......+++||.+.|
T Consensus 898 ~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l 964 (1049)
T 3m1i_C 898 FIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVY-DNKISVPLYQEAEVPQGTSNQVYLSQYLANML 964 (1049)
T ss_dssp HHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHHHH-TTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHhhhHHHHHHHHHHHHHHHh-cCcccccccCccccCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999984210 00111111 013336788888887
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=1.6e-54 Score=553.54 Aligned_cols=710 Identities=15% Similarity=0.136 Sum_probs=502.9
Q ss_pred HHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCCh
Q 002126 5 LQIKVAQAVHVLNHD-TESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (962)
Q Consensus 5 ~~~~v~~ai~~ly~~-~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~ 83 (962)
..++|+++++.+|++ +|++.|++|+++|++||++|++|..+..+|... +.+.++||||+++|+++|+++|..+++
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~----s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEK----TQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTST----TSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 345788999999975 578889999999999999999999999988622 346899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhcc
Q 002126 84 AAKDALLNALLVAAKRFSS----GPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (962)
Q Consensus 84 e~~~~Lr~~Ll~~l~~~~~----~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (962)
+++..||+.+++++.+... .++.|++|+|.+++.++.+.+ .||+++.++++.+++ ++......|.+|..|+
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~---~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ---GETQTELVMFILLRLA 161 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Confidence 9999999999999987532 568999999999999999976 599999999998875 3445788999999999
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccC---------CCCC--cchhhhHHHHHHHHHHHHHh
Q 002126 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFD---------GGVP--VQLHDRNRKILRCLLSWVRA 226 (962)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~---------~~~~--~~~~~~~~~~l~cl~sWi~~ 226 (962)
||+.+.+. +...+|..+++.+..+.+.|+.++.+++....+ .+.+ .+...+...+|+|+.+|+.
T Consensus 162 Eev~~~~~----~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~- 236 (1204)
T 3a6p_A 162 EDVVTFQT----LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID- 236 (1204)
T ss_dssp HHHHTSCC----SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh-
Confidence 99876532 456788888888998999999988877754200 0000 0123578899999999998
Q ss_pred cccccccchhhhhc--chHHHHHHhcCCCCcHHHHHHHHHHHHhcCCChhH--HHHhhhhh--hHHhhhhhh-------h
Q 002126 227 GCFTEISQGSLAAH--PLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQ--ALLCRVPF--LKELLLLPA-------L 293 (962)
Q Consensus 227 ~~~~~~~~~~~~~~--~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~--~l~~~~~~--l~~~~~~~~-------~ 293 (962)
|++.+.+... .+++.++..+.+++++.+|++||+++++++++... .++..+.. +...+. .+ +
T Consensus 237 ----Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~-~~~~~~~~~~ 311 (1204)
T 3a6p_A 237 ----WVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILS-AAQTADGGGL 311 (1204)
T ss_dssp ----TSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHH-HHHTCCCCSC
T ss_pred ----ccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHH-HhhcCCCCCC
Confidence 7787776443 49999999999999999999999999998764111 12221100 112221 11 1
Q ss_pred ccCcHhHHhhHHHHHHHHhHhhhHHHHh-----cChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhh
Q 002126 294 TDGDEKVIGGLACLMSEIGQAAPSLIVE-----ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASI 368 (962)
Q Consensus 294 ~~~d~d~~~~l~~l~~~~~e~~~~~l~~-----~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~ 368 (962)
.++|.+.++.+|++++++|+.+...+.+ .+..+..++++|+.++.|| +.+++..+++||+.+.+... .
T Consensus 312 ~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~--~~~vs~~~l~fW~~ll~~~~-~---- 384 (1204)
T 3a6p_A 312 VEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHP--SQFLRSSTQMTWGALFRHEI-L---- 384 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHSCTT-T----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCc--cHHhHHHHHHHHHHHHhccc-c----
Confidence 3446778999999999999987776653 3456779999999999998 78899999999998766531 0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH---HHHhccCCCCCC-------C--CCCCCCCchHHHHHHHHHHHHHHHHHhcCcH--
Q 002126 369 AKNKKHVEDMFFSVFSALLDAL---LLRAQVDESSFN-------D--DGMVDLPDGLVQFRMNLVELLVDICQLLRSA-- 434 (962)
Q Consensus 369 ~~~~~~~~~~~~~~~~~L~~~l---~~k~~~p~~~~~-------~--~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~-- 434 (962)
...+.+.+++.+|++++ +.|++||++... + ++++|.+++|.+||++++|++++++.+.+..
T Consensus 385 -----~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l 459 (1204)
T 3a6p_A 385 -----SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSF 459 (1204)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 11245889999999999 899999986321 0 1111223579999999999999999887433
Q ss_pred -HHHHHHHHhhhcC--------------------CCCCCCchhhhHHHHHHHhhhhcccc-C-CCccc---hhHHHHHHH
Q 002126 435 -TFIQKVFFGSWGS--------------------ANVPIPWKEVETKLFALNVVSEVVLQ-E-GQAFD---FSVIMQLVA 488 (962)
Q Consensus 435 -~~l~~~~~~l~~~--------------------~~~~~~W~~~Ea~Lf~l~~iae~i~~-~-~~~~~---l~~i~~~l~ 488 (962)
.++..+.+.+... ...+..|...||..+.+.++++++.. . .+... ++.+++.+.
T Consensus 460 ~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll 539 (1204)
T 3a6p_A 460 QMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVL 539 (1204)
T ss_dssp HHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 1222232332210 01134599999999999999887732 1 11110 234555444
Q ss_pred Hh-ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhccc--------------CchhHHHHHHHHH
Q 002126 489 VL-SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--------------AVSSNACASALRK 553 (962)
Q Consensus 489 ~l-~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~--------------~~~~~~Aa~al~~ 553 (962)
.+ +.+|. ++++. +.++|+|++|+..||++|+++|+++++++.+ .+++.+|+.+|.+
T Consensus 540 ~~~~~~p~--------l~~~~-i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~ 610 (1204)
T 3a6p_A 540 NFDTKDPL--------ILSCV-LTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610 (1204)
T ss_dssp HCCCSCHH--------HHHHH-HHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred hCCCCChH--------HHHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHH
Confidence 43 34543 45555 5899999999999999999999999998865 1489999999999
Q ss_pred HHHHhhcccCCCccHHHHHHHHHH-HHhcC-CChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHh-----h
Q 002126 554 ICEDASALIDEPSNLEILMWIGEA-LEKRH-LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGK-----L 626 (962)
Q Consensus 554 lc~~c~~~l~~p~~~~~l~~~~~~-l~~~~-l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~-----~ 626 (962)
||++|+..|.+ +++.|.+.+.. +..+. ++..++..+++|++.+...+++++....+++.++.|++++|.+ .
T Consensus 611 L~~~~~~~L~p--~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~ 688 (1204)
T 3a6p_A 611 MCRDYPQLVLP--NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHRV 688 (1204)
T ss_dssp HHHHCHHHHGG--GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhhHHHHH--HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHHh
Confidence 99999998863 77777766654 45566 8999999999999999666677777788899999999999885 2
Q ss_pred hcccC---------CC---CCCCCchhh-----HHHhHHHHHHHHhhh---------hh-cccccccCCCCCCCCchHHH
Q 002126 627 IDGDN---------NH---SLIHNPATY-----TQILSSATRGLYRMG---------TV-FSHLPVPLPTNPAGDDPIFA 679 (962)
Q Consensus 627 ~~~~~---------~~---~~~~~~~~~-----~~~l~~~~~~l~~L~---------~i-~~~l~~~~~~~~~~~~p~~~ 679 (962)
+.... +. ....++... ...+......++++. +. |-....+ ..++...||+..
T Consensus 689 ~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~-~~~p~~~~p~~~ 767 (1204)
T 3a6p_A 689 LSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTS-SGNPIFRNPCTE 767 (1204)
T ss_dssp HHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECS-SCCEEECCTTHH
T ss_pred hcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceeccCC-CCCccccCchHH
Confidence 22110 00 001111111 001112233333331 11 1100000 011223589999
Q ss_pred HHHHHHHHHHHHHHhhhc--cchHHHHHHH-------------HHHHHHHHhh-hhhhH-hhHHHHHHHHHHhhhhhcCc
Q 002126 680 LLRVFWPMLEKLFRSEHM--ENGNLSTAAC-------------RALSLAIQSS-GQHFV-TLLPQVLDCLSTNFVSFQNH 742 (962)
Q Consensus 680 ~~~~i~~~l~~i~~~~~~--~~~~v~e~~c-------------~~~~~~~~~l-~~~~~-p~l~~~~~~l~~~f~~~~~~ 742 (962)
.+..+||.+.+++.. +. .++++.+++| ++.+.|+..- ..... +..+...+.+-.-+... +.
T Consensus 768 ~i~~ilP~ll~Ll~~-~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-re 845 (1204)
T 3a6p_A 768 QILKLLDNLLALIRT-HNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFFSTL-YE 845 (1204)
T ss_dssp HHHHHHHHHHHHHHH-HHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCCCCCCTTCCCSCCCHHHHHHHHHHHH-HH
T ss_pred HHHHHhHHHHHHHHH-HHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCcccccccccCCCcCcHHHHHHHHHHH-HH
Confidence 999999999999984 54 6799999988 6666665542 11111 22234445554444443 77
Q ss_pred chHHHHHHHHHHHhcC
Q 002126 743 ECYIRTASVVIEEFGH 758 (962)
Q Consensus 743 ~~~L~l~~~lv~~~g~ 758 (962)
+||.++.+.. ..+|.
T Consensus 846 ~~y~~lg~~~-~~l~~ 860 (1204)
T 3a6p_A 846 NCFHILGKAG-PSMQQ 860 (1204)
T ss_dssp HHHHHHHHHH-HHHCT
T ss_pred HHHHHHHHHh-hcccc
Confidence 8887766553 33444
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=5.9e-31 Score=332.66 Aligned_cols=719 Identities=12% Similarity=0.066 Sum_probs=435.7
Q ss_pred chHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCC---
Q 002126 3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY--- 79 (962)
Q Consensus 3 ~~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~--- 79 (962)
|+..+++.+++.... ++|++.| |+++|++++++|+.|..+.+++.+.. .+.++|+|||.+||++|+++|.
T Consensus 1 M~d~~~l~~~L~~~~-spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~----~~~~vR~~A~i~lkn~i~~~w~~~~ 73 (960)
T 1wa5_C 1 MSDLETVAKFLAESV-IASTAKT--SERNLRQLETQDGFGLTLLHVIASTN----LPLSTRLAGALFFKNFIKRKWVDEN 73 (960)
T ss_dssp CCHHHHHHHHHHHTT-SGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred CCcHHHHHHHHHHhc-CCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 346788999998855 5676666 99999999999999999999997543 3579999999999999999998
Q ss_pred ---CCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHh
Q 002126 80 ---YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLT 154 (962)
Q Consensus 80 ---~l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~ 154 (962)
.++++++..||+.|++.+.. .++.|++|+|.+++.++.+.. .||++++++++.+++. ++......|.+|.
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~--~~~~~~~aL~~l~ 148 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND--DMVTNKGVLTVAH 148 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS--CTTHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 79999999999999999975 458999999999999998854 6999999999999763 4456677888888
Q ss_pred hcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcch-------hhhHHHHHHHHHHHHHhc
Q 002126 155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQL-------HDRNRKILRCLLSWVRAG 227 (962)
Q Consensus 155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~-------~~~~~~~l~cl~sWi~~~ 227 (962)
.+.++.. ..- ..++.+.++..-+....+.+++++........++. .+ ......+++|+.+-+.+
T Consensus 149 ~i~~~~~---~~~--~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~k~~~~l~~~- 219 (960)
T 1wa5_C 149 SIFKRWR---PLF--RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANE---NNKASLNILFDVLLVLIKLYYDFNCQ- 219 (960)
T ss_dssp HHHGGGT---TSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----CHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHH---Hhh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 8877652 110 13344555555566677777777655422111110 01 11223344555332111
Q ss_pred ccccccchhhhhcchHHHHHHhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccC---c-HhHHhh
Q 002126 228 CFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDG---D-EKVIGG 303 (962)
Q Consensus 228 ~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---d-~d~~~~ 303 (962)
.+|... ... ++.-...+..++.... +... ..-.++ . ......
T Consensus 220 ---~~~~~~--~~~--------------~~~~~~~~~~~l~~~~--------------p~~~-~d~d~~~~~~~~~vk~~ 265 (960)
T 1wa5_C 220 ---DIPEFF--EDN--------------IQVGMGIFHKYLSYSN--------------PLLE-DPDETEHASVLIKVKSS 265 (960)
T ss_dssp ---CCCHHH--HHT--------------HHHHHHHHHHHHSCCS--------------CCCC-------CCCHHHHHHHH
T ss_pred ---cchHHH--HHH--------------HHHHHHHHHHHHcCCC--------------Cccc-CCcccccccHHHHHHHH
Confidence 111100 000 0000111111111000 0000 000000 0 112346
Q ss_pred HHHHHHHHhHhhhHHHHhcChhHHHHHHHHHhccc----CCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhh
Q 002126 304 LACLMSEIGQAAPSLIVEASPEALALADALLSCVA----FPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMF 379 (962)
Q Consensus 304 l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~----~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~ 379 (962)
+++.++.+.+.|...+.. ....+++.++.... ... ++++...+++||..+.+. +.....+
T Consensus 266 ~~~~l~~l~~~~~~~f~~---~~~~~~~~~~~~l~~~~~~~~-~~~~~~~al~fl~~~~~~------------~~~~~~~ 329 (960)
T 1wa5_C 266 IQELVQLYTTRYEDVFGP---MINEFIQITWNLLTSISNQPK-YDILVSKSLSFLTAVTRI------------PKYFEIF 329 (960)
T ss_dssp HHHHHHHHHHHCHHHHHH---HHHHHHHHHHHHHHHCCSCTT-SHHHHHHHHHHHHHHHTS------------HHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcC-cHHHHHHHHHHHHHHhCc------------HhHHHHH
Confidence 778888888887766642 22334444444332 122 457888999999987542 1123445
Q ss_pred H--HHHHHHH-HHHHHHhccCCCCCCCCCCCC---------CCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHh----
Q 002126 380 F--SVFSALL-DALLLRAQVDESSFNDDGMVD---------LPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFG---- 443 (962)
Q Consensus 380 ~--~~~~~L~-~~l~~k~~~p~~~~~~~~~~d---------~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~---- 443 (962)
+ +++.+++ .+++..|.|++++.. .|+.| |.+++...|+..++++..++...| +.++..++..
T Consensus 330 ~~~~~l~~li~~~i~~~m~~~~~d~e-~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~ 407 (960)
T 1wa5_C 330 NNESAMNNITEQIILPNVTLREEDVE-LFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGF 407 (960)
T ss_dssp CSHHHHHHHHHHTHHHHHSCCGGGTT-TTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHhcCCCHHHHH-HHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHH
Confidence 5 8999999 688999999765322 23222 135566788888999999988877 3334333222
Q ss_pred hhc-CCCCCCCchhhhHHHHHHHhhhhccc--cC--C---CccchhH-HHH-HHHHhccC-c-hhhhhhHHHHHHHHHHH
Q 002126 444 SWG-SANVPIPWKEVETKLFALNVVSEVVL--QE--G---QAFDFSV-IMQ-LVAVLSAS-R-SEELKGFMHIVYRSLAD 511 (962)
Q Consensus 444 l~~-~~~~~~~W~~~Ea~Lf~l~~iae~i~--~~--~---~~~~l~~-i~~-~l~~l~~~-~-~~~~~~~~~v~~~t~~~ 511 (962)
+.. ..+++.+|+..||++|+++++++... .. . ....+.. +.+ +++.+.+. | + +.+|.++ ++
T Consensus 408 l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~------p~vr~~a-~~ 480 (960)
T 1wa5_C 408 VDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPH------IILRVDA-IK 480 (960)
T ss_dssp HHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSC------HHHHHHH-HH
T ss_pred HHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCC------ceehHHH-HH
Confidence 211 11234679999999999999987531 10 1 0001222 223 33334321 1 2 2267766 59
Q ss_pred HHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHH-----------hhcccCCCccHHH-HHHHHHH
Q 002126 512 VIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICED-----------ASALIDEPSNLEI-LMWIGEA 577 (962)
Q Consensus 512 ~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~-----------c~~~l~~p~~~~~-l~~~~~~ 577 (962)
++|+|++|+ +|+++.++++.+++++.++. |+.+||.||.+||+. ++..+. | +++. +..+...
T Consensus 481 ~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~-p-~l~~ll~~L~~l 556 (960)
T 1wa5_C 481 YIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS-N-STEILLKNLIAL 556 (960)
T ss_dssp HHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT-T-THHHHHHHHHHH
T ss_pred HHHHHHhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhh-h-hHHHHHHHHHHH
Confidence 999999998 78999999999999998755 899999999999984 244554 4 5544 4444444
Q ss_pred HHhcC---CChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHH
Q 002126 578 LEKRH---LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLY 654 (962)
Q Consensus 578 l~~~~---l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 654 (962)
+.... .+..+...++++++.++...+.+ ...++..++..++..+.+..+.. .++.. ....++
T Consensus 557 l~~~~~~~~~~~~~e~l~~al~~vv~~~~~~--~~p~~~~l~~~L~~~l~~~~~~~------~~~~~-------~~~~~e 621 (960)
T 1wa5_C 557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDS--IQPLFPQLLAQFIEIVTIMAKNP------SNPRF-------THYTFE 621 (960)
T ss_dssp HHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHHHHHHHTTSC------CCHHH-------HHHHHH
T ss_pred HHhccCCCCcccccHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHhCC------CCcHH-------HHHHHH
Confidence 43321 11225678999999999887642 35677777777777777664322 12111 123567
Q ss_pred hhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHH-
Q 002126 655 RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLS- 733 (962)
Q Consensus 655 ~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~- 733 (962)
+++.+.+... +++...+.+.+||++..++. ... .++.+.++.++...+... ..+.+.++.++..+.
T Consensus 622 ~l~~l~~~~~---------~~~~~~~~~~~~p~~~~iL~-~~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~ 688 (960)
T 1wa5_C 622 SIGAILNYTQ---------RQNLPLLVDSMMPTFLTVFS-EDI--QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLA 688 (960)
T ss_dssp HHHHHHHTSC---------GGGHHHHHHHHHHHHHHHHH-TTC--TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTS
T ss_pred HHHHHHhcCC---------cchHHHHHHHHHHHHHHHHH-hhh--HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcC
Confidence 7777776511 24577788999999999997 343 345666666666655544 445555555555555
Q ss_pred -HhhhhhcCcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHH
Q 002126 734 -TNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKE 812 (962)
Q Consensus 734 -~~f~~~~~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~ 812 (962)
..+......+....++...+...++ .+.+ +..++.. +..+.+. ..+| ...|.++..++..+|..
T Consensus 689 ~~~~~~~~~~~~~~~~L~~~~~~~~~--~~~~-~~~~l~~------~~~~~~~----~~~~--~~a~~ll~~i~~~~~~~ 753 (960)
T 1wa5_C 689 PNVWELKGNIPAVTRLLKSFIKTDSS--IFPD-LVPVLGI------FQRLIAS----KAYE--VHGFDLLEHIMLLIDMN 753 (960)
T ss_dssp GGGGCCTTTHHHHHHHHHHHHHHHGG--GCSC-SHHHHHH------HHHHHTC----TTTH--HHHHHHHHHHHHHSCHH
T ss_pred HHHhcCCCCchhHHHHHHHHHHhChH--HHHH-HHHHHHH------HHHHhCC----Cccc--chHHHHHHHHHHHCCHH
Confidence 4454221111122223333332221 2222 2222221 1112121 1245 88999999999999987
Q ss_pred HHhhchhchHHHHHHHHHhhccCchhH-HHHHHHHHHHHH
Q 002126 813 VLAASGALLEVSFQKAAICCTAMHRGA-ALAAMSYLSCFL 851 (962)
Q Consensus 813 ~l~~~~~~l~~~l~~~l~~l~~~e~~~-~~a~~~fl~~li 851 (962)
.+. ++++.++...+..++....+. .++.+.|+..+.
T Consensus 754 ~~~---~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 754 RLR---PYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp HHG---GGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 432 578899998888887665444 447777776665
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.9e-30 Score=324.86 Aligned_cols=701 Identities=13% Similarity=0.111 Sum_probs=450.6
Q ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCCh
Q 002126 4 DLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (962)
Q Consensus 4 ~~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~ 83 (962)
+..+++.++++..+ ++|++.|++|+++|++++++|+.|.....++.... +.+.++|++||..|++.|+++|..+++
T Consensus 10 ~~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~---~~~~~vR~~a~~~Lkn~i~~~w~~~~~ 85 (852)
T 4fdd_A 10 QGLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLK---SEDEPTRSLSGLILKNNVKAHFQNFPN 85 (852)
T ss_dssp HHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHTTTSGGGCCH
T ss_pred hhHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHHHccCCCCH
Confidence 45667888888776 56999999999999999999999999999998522 246799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc--cCCchHHHHHHHhhcccCCCcchHHHHHHHhhcccccc
Q 002126 84 AAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVI 161 (962)
Q Consensus 84 e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~ 161 (962)
+.+..||+.+++.+. ..++.|+++++.+++.++.+.+ .||+.++.++..+++. ++......+..|..+.++..
T Consensus 86 ~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~--~~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 86 GVTDFIKSECLNNIG---DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE--DYNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp HHHHHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS--SHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhH
Confidence 999999999998764 4567899999999999998754 7999999999999763 33445667777777776653
Q ss_pred cccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcc
Q 002126 162 DSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (962)
Q Consensus 162 ~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ 241 (962)
.. ..+ ..+......++..+.+.+.. ++..++..+++|+..++... +. .+ .+
T Consensus 161 ~~---------~~~----~~~~~~~~~il~~l~~~l~~--------~~~~vR~~A~~aL~~~~~~~-----~~-~~--~~ 211 (852)
T 4fdd_A 161 EI---------LDS----DVLDRPLNIMIPKFLQFFKH--------SSPKIRSHAVACVNQFIISR-----TQ-AL--ML 211 (852)
T ss_dssp TH---------HHH----CSSSSCHHHHHHHHTTTTTC--------SSHHHHHHHHHHHHTTTTTT-----CH-HH--HT
T ss_pred HH---------hch----hhhcchHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHhcc-----cH-HH--HH
Confidence 10 000 00111233444444443332 34578889999988766521 10 00 00
Q ss_pred hHHHHHHhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHh
Q 002126 242 LLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVE 321 (962)
Q Consensus 242 ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~ 321 (962)
....+++.+. ....++|.+..+..++.+..+++.+...+..
T Consensus 212 -------------------------------~~~~~l~~l~--------~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 212 -------------------------------HIDSFIENLF--------ALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp -------------------------------SHHHHHHHHH--------HHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred -------------------------------HHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 0011112111 1234566677777888888888877766543
Q ss_pred cChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCC-
Q 002126 322 ASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESS- 400 (962)
Q Consensus 322 ~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~- 400 (962)
+...+++.++.+...+ |.++...+++||..+++.- ......+|++.+++..++.++.|++++
T Consensus 253 ---~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 253 ---HMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQP------------ICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp ---GHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTST------------THHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred ---HHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcch------------hHHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 3456788888888876 6789999999999977631 112345778889999999999886531
Q ss_pred -C--CC-CCCCCCCch--HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccC
Q 002126 401 -F--ND-DGMVDLPDG--LVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQE 474 (962)
Q Consensus 401 -~--~~-~~~~d~~d~--f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~ 474 (962)
| .+ ++|.+++|+ -...|+..++.+..+....|.+ ++..++..+.... .+.+|...|+++++++++++...+.
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l-~~~~~~~R~aa~~alg~i~~~~~~~ 393 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELL-FHHEWVVKESGILVLGAIAEGCMQG 393 (852)
T ss_dssp HHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcchHH
Confidence 1 01 011111111 1234777788888888877753 3443333322110 2357999999999999999887642
Q ss_pred CCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh--ChhchHHHHHHHHHhccc--CchhHHHHHH
Q 002126 475 GQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA--FQTNARPLLLFLAAGISE--AVSSNACASA 550 (962)
Q Consensus 475 ~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~--~p~~L~~vL~~l~~~l~~--~~~~~~Aa~a 550 (962)
-.. .++.++..+.....+++.. ||.++ +.++|+|++|+.. +..++..+++.+++++.+ +.++..|+.|
T Consensus 394 ~~~-~l~~~l~~l~~~l~d~~~~------Vr~~a-~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~a 465 (852)
T 4fdd_A 394 MIP-YLPELIPHLIQCLSDKKAL------VRSIT-CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSA 465 (852)
T ss_dssp HGG-GHHHHHHHHHHHTTCSSHH------HHHHH-HHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHcCCCCHH------HHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 221 2466666555555555432 67766 5999999999976 567999999999999975 5699999999
Q ss_pred HHHHHHHhhcccCCCccHHHHHHH-HHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcc
Q 002126 551 LRKICEDASALIDEPSNLEILMWI-GEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDG 629 (962)
Q Consensus 551 l~~lc~~c~~~l~~p~~~~~l~~~-~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~ 629 (962)
+.++|+.|+..+. | +++.+... ...+... +......++++++.++..++..-...+++..++.++++.+..+.+.
T Consensus 466 L~~l~~~~~~~l~-~-~l~~ll~~L~~~l~~~--~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 466 FATLEEEACTELV-P-YLAYILDTLVFAFSKY--QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 541 (852)
T ss_dssp HHHHHHHHGGGGG-G-GHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhhHhhH-h-HHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998864 3 55555443 3433322 4556667889999998766543323568888888888776654332
Q ss_pred cCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhc------------
Q 002126 630 DNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHM------------ 697 (962)
Q Consensus 630 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~------------ 697 (962)
. +.. ...+.+++.+.+.+.. .+.++...+++.+..++...+.
T Consensus 542 ~--------~~~--------~~~~~~l~~i~~~~g~----------~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 542 D--------KDL--------FPLLECLSSVATALQS----------GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp C--------TTH--------HHHHHHHHHHHHHHGG----------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred c--------HHH--------HHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 1 111 1234445544444332 1233444444433333321000
Q ss_pred --cchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcCCCCccchH--HHHHHHH
Q 002126 698 --ENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLF--VTTFERF 773 (962)
Q Consensus 698 --~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~~~~~~l--~~l~~~l 773 (962)
.+.++.. +.+.+++.++..+|.+ +.+.+ ..++..+
T Consensus 596 ~~~d~~~~~---------------------------------------~~l~~l~~l~~~l~~~--~~~~~~~~~~~~~l 634 (852)
T 4fdd_A 596 EAPDKDFMI---------------------------------------VALDLLSGLAEGLGGN--IEQLVARSNILTLM 634 (852)
T ss_dssp CCCCTHHHH---------------------------------------HHHHHHHHHHHHHGGG--GHHHHHTCCHHHHH
T ss_pred CCCcchHHH---------------------------------------HHHHHHHHHHHHHhHh--HHHHhcCCcHHHHH
Confidence 0122222 2344445555555431 11111 0111111
Q ss_pred hhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002126 774 SQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (962)
Q Consensus 774 ~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~ 853 (962)
. ..+. +..|++.++.+.++..+.+.++..+. +.++.++...+..+...+....+.++..+..+...
T Consensus 635 ~-----~~l~-----~~~~~vr~~a~~~l~~l~~~~~~~~~----~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~ 700 (852)
T 4fdd_A 635 Y-----QCMQ-----DKMPEVRQSSFALLGDLTKACFQHVK----PCIADFMPILGTNLNPEFISVCNNATWAIGEISIQ 700 (852)
T ss_dssp H-----HHTT-----CSSHHHHHHHHHHHHHHHHHCGGGTG----GGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHH
T ss_pred H-----HHhC-----CCChhHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 1 1121 34689999999999999999987655 35777888888888777778888888777776644
Q ss_pred hhhhccCCCCCCCCccHHHHHHHHHHhccHHHHHHHHHHhcC-CCcccchhhHHHHHHHHH
Q 002126 854 CLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLG-VSAMSRVHKCATILQQLA 913 (962)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~Lv~~ll~~~~g-~~~rs~~~~~~~iL~~l~ 913 (962)
.+. -+.++-..++..++.-+.. +.+++..+..+..+..|.
T Consensus 701 ~~~--------------------~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~ 741 (852)
T 4fdd_A 701 MGI--------------------EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLG 741 (852)
T ss_dssp HGG--------------------GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred hhH--------------------hHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHH
Confidence 321 1334445555556555542 346667777777777777
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=4.4e-28 Score=304.61 Aligned_cols=714 Identities=12% Similarity=0.113 Sum_probs=462.2
Q ss_pred HHHHHHHHHh-cCCCChHHHHHHHHHHHHhhcC--hHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCC-----
Q 002126 7 IKVAQAVHVL-NHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEG----- 78 (962)
Q Consensus 7 ~~v~~ai~~l-y~~~d~~~~~~A~~~L~~~Q~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~----- 78 (962)
.++.+++... + ++|++.|++|+++|++++++ |+.|..+.++|...+ .+.++|+||+++|+++|.++|
T Consensus 4 ~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~----~~~~vR~~A~~~lk~~i~~~w~~~~~ 78 (861)
T 2bpt_A 4 AEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN----TKLEGRILAALTLKNELVSKDSVKTQ 78 (861)
T ss_dssp HHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred HHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCC----CChHHHHHHHHHHHhhccCcChHHHH
Confidence 4899999887 6 67999999999999999987 999999999997642 357999999999999998764
Q ss_pred ------CC-CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-c--cCCchHHHHHHHhhcccCCCcchHH
Q 002126 79 ------YY-LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMA 148 (962)
Q Consensus 79 ------~~-l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~-~--~W~~~i~~li~~~~~~~~~~~~~~~ 148 (962)
.. ++++.+..||+.|++.+. ..++.++++++.+++.++.+. + .||+.++.++..+.+.. ++.....
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~-~~~~r~~ 154 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PENVKRA 154 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHHHHHH
T ss_pred HHHHhHhhhCCHHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCC-CHHHHHH
Confidence 65 999999999999999875 456788999999999999875 3 69999999999997521 3445667
Q ss_pred HHHHHhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcc
Q 002126 149 VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGC 228 (962)
Q Consensus 149 lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~ 228 (962)
.+.++..+++++... .. .+....+.++..+...+.... ++..++..+++|+.+|+.+.
T Consensus 155 al~~l~~l~~~~~~~------~~---------~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~al~~l~~~~~~~- 212 (861)
T 2bpt_A 155 SLLALGYMCESADPQ------SQ---------ALVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSLIFI- 212 (861)
T ss_dssp HHHHHHHHHHTSSTT------SS---------TTGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHGGGC-
T ss_pred HHHHHHHHHHcCChh------hh---------HHHHHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHHHHH-
Confidence 888999999886421 00 123355667777766655421 13579999999999998753
Q ss_pred cccccchhh---hhcchHHHHHHhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHH
Q 002126 229 FTEISQGSL---AAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLA 305 (962)
Q Consensus 229 ~~~~~~~~~---~~~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~ 305 (962)
....- ....+++.++. ...+++.+.....+
T Consensus 213 ----~~~~~~~~~~~~ll~~l~~-------------------------------------------~~~~~~~~~r~~a~ 245 (861)
T 2bpt_A 213 ----KNNMEREGERNYLMQVVCE-------------------------------------------ATQAEDIEVQAAAF 245 (861)
T ss_dssp ----HHHHTSHHHHHHHHHHHHH-------------------------------------------HHTCSCHHHHHHHH
T ss_pred ----HHHccChhHHHHHHHHHHH-------------------------------------------HhcCCCHHHHHHHH
Confidence 11100 00011111111 12334444445556
Q ss_pred HHHHHHhHhhhHHHHhcChhHH-HHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhh--hhhh-hhhhhHH
Q 002126 306 CLMSEIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK--NKKH-VEDMFFS 381 (962)
Q Consensus 306 ~l~~~~~e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~--~~~~-~~~~~~~ 381 (962)
+.+..+++.+...+.. +.. .+++.++.....+ +.++...+++||..+.+........... ..+. .....++
T Consensus 246 ~~l~~l~~~~~~~~~~---~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (861)
T 2bpt_A 246 GCLCKIMSKYYTFMKP---YMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS 320 (861)
T ss_dssp HHHHHHHHHHGGGCHH---HHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHH
Confidence 6666666655433321 223 4566666666654 6789999999999988764211110000 0000 1123467
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHH
Q 002126 382 VFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKL 461 (962)
Q Consensus 382 ~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~L 461 (962)
++..++..++.++..++++ ++++++ ..|+...+++..++..+|.. ++..++..+.... .+.+|+..|+++
T Consensus 321 ~~~~il~~ll~~l~~~~~d-------~~d~~~-~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l-~~~~~~~r~~a~ 390 (861)
T 2bpt_A 321 SIKDVVPNLLNLLTRQNED-------PEDDDW-NVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNI-TADNWRNREAAV 390 (861)
T ss_dssp HHHHHHHHHHHHTTCCCCC--------CCCCC-HHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHT-TCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccc-------cccccC-cHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHc-CCCChhHHHHHH
Confidence 7888999999998865331 112333 66888889998888877743 3343333322111 245799999999
Q ss_pred HHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC---hhchHHHHHHHHHhc
Q 002126 462 FALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF---QTNARPLLLFLAAGI 538 (962)
Q Consensus 462 f~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~---p~~L~~vL~~l~~~l 538 (962)
++++++++....+.-...++.++..+.....+++.. +|.++ +.++|+|++++..+ +.+++.+++.++.++
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~------vr~~a-~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l 463 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ------VKETT-AWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH------HHHHH-HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH------HHHHH-HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh
Confidence 999999987642110001344444444434444322 56655 59999999999764 679999999999999
Q ss_pred cc-CchhHHHHHHHHHHHHHhh----cccCCCccHHHHH-HHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHH
Q 002126 539 SE-AVSSNACASALRKICEDAS----ALIDEPSNLEILM-WIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLL 612 (962)
Q Consensus 539 ~~-~~~~~~Aa~al~~lc~~c~----~~l~~p~~~~~l~-~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l 612 (962)
.+ +.++..|+.++..+|+.|. ..+. | +++.+. .+...+.....+...|..++++++.++...+.. ...++
T Consensus 464 ~~~~~v~~~a~~al~~l~~~~~~~~~~~l~-~-~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~--~~~~~ 539 (861)
T 2bpt_A 464 QDHPKVATNCSWTIINLVEQLAEATPSPIY-N-FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--VAETS 539 (861)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHSSSSSCGGG-G-GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhcccccchhhH-H-HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh--hHHHH
Confidence 86 4689999999999999997 3332 3 555444 344444333333567889999999999998864 36788
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 002126 613 ARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLF 692 (962)
Q Consensus 613 ~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~ 692 (962)
..++.+++..+.+.+..........+...... ++ ...+..|+.+.+.+... +.++...+++.+..++
T Consensus 540 ~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~-~~--~~~~~~l~~l~~~~~~~----------~~~~~~~l~~~l~~~l 606 (861)
T 2bpt_A 540 ASISTFVMDKLGQTMSVDENQLTLEDAQSLQE-LQ--SNILTVLAAVIRKSPSS----------VEPVADMLMGLFFRLL 606 (861)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH-HH--HHHHHHHHHHHHHCGGG----------TGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCChhhHHHHHH-HH--HHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHH
Confidence 89999999888876321100000000000101 11 12344555555544421 1234567788887777
Q ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcC--cchHHHHHHHHHHHhcCCCCccchHHHHH
Q 002126 693 RSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHKDEYGPLFVTTF 770 (962)
Q Consensus 693 ~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~--~~~~L~l~~~lv~~~g~~~~~~~~l~~l~ 770 (962)
.. ...+ .+.+.++.++......+|.++.|+++.++..+...+....+ ....+.+++.++...|. .+.+.+..++
T Consensus 607 ~~-~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~l~ 682 (861)
T 2bpt_A 607 EK-KDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--DFRRYSDAMM 682 (861)
T ss_dssp HS-TTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--GGHHHHHHHH
T ss_pred cc-CCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch--hccchHHHHH
Confidence 52 2121 78899999999999999999999999988888877642111 12245667777777764 3333343333
Q ss_pred HHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCc-----------hhH
Q 002126 771 ERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH-----------RGA 839 (962)
Q Consensus 771 ~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e-----------~~~ 839 (962)
..+ +..+.. ...++++....+..+..+.++.+..|. ++++.+++..+.++.... ...
T Consensus 683 ~~l-----~~~l~~---~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~v 750 (861)
T 2bpt_A 683 NVL-----AQMISN---PNARRELKPAVLSVFGDIASNIGADFI----PYLNDIMALCVAAQNTKPENGTLEALDYQIKV 750 (861)
T ss_dssp HHH-----HHHHHC---TTCCTTHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHH
T ss_pred HHH-----HHHhCC---ccccHhhhHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 322 233332 124689999999999999999887655 345666666666665321 123
Q ss_pred HHHHHHHHHHHHhh
Q 002126 840 ALAAMSYLSCFLEE 853 (962)
Q Consensus 840 ~~a~~~fl~~li~~ 853 (962)
..++++.+..++..
T Consensus 751 r~~~l~~~~~i~~~ 764 (861)
T 2bpt_A 751 LEAVLDAYVGIVAG 764 (861)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46777777777743
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.95 E-value=2e-23 Score=262.61 Aligned_cols=711 Identities=12% Similarity=0.089 Sum_probs=450.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcC--hHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHh-----------
Q 002126 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQ----------- 75 (962)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~----------- 75 (962)
+.+++..++ ++|++.|++|+++|++++++ |+.|....++|..++ .+.++|.+|+.+|++++.
T Consensus 3 l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~----~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (876)
T 1qgr_A 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG----NSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCC----CCHHHHHHHHHHHHHhccccchHhHHHHH
Confidence 567777776 67899999999999999988 999999999997642 247999999999999985
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc---cCCchHHHHHHHhhcccCCCcchHHHHHH
Q 002126 76 NEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV---EHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (962)
Q Consensus 76 ~~~~~l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~---~W~~~i~~li~~~~~~~~~~~~~~~lL~i 152 (962)
+.|..++++.+..||+.|++.+.. .+..+ ++++.+++.++.+.. .||+.++.++..+.+...++......+..
T Consensus 78 ~~w~~l~~~~~~~ik~~ll~~l~~---~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~ 153 (876)
T 1qgr_A 78 QRWLAIDANARREVKNYVLHTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTT---CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHhCC---CcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 458999999999999999998753 33446 999999999987753 69999999999997621023445678888
Q ss_pred HhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccc
Q 002126 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (962)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~ 232 (962)
|..+++++. + +.+....+.++..+.+.+.... ++..++..+++|+..|+.+.
T Consensus 154 l~~l~~~~~---------~--------~~~~~~~~~ll~~l~~~l~~~~------~~~~vr~~a~~~l~~~~~~~----- 205 (876)
T 1qgr_A 154 IGYICQDID---------P--------EQLQDKSNEILTAIIQGMRKEE------PSNNVKLAATNALLNSLEFT----- 205 (876)
T ss_dssp HHHHHHHSC---------H--------HHHGGGHHHHHHHHHHHHSTTC------SCHHHHHHHHHHHHHHGGGC-----
T ss_pred HHHHHHhcC---------H--------hhHHhHHHHHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHHHHH-----
Confidence 888887752 0 0144567778887777665421 13468899999999998742
Q ss_pred cchhhhh----cchHHHHHHhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHH
Q 002126 233 SQGSLAA----HPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLM 308 (962)
Q Consensus 233 ~~~~~~~----~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~ 308 (962)
+.. +.. ..+++.++. ...++|.+.....++.+
T Consensus 206 ~~~-~~~~~~~~~il~~l~~-------------------------------------------~~~~~~~~vr~~a~~~l 241 (876)
T 1qgr_A 206 KAN-FDKESERHFIMQVVCE-------------------------------------------ATQCPDTRVRVAALQNL 241 (876)
T ss_dssp HHH-HTSHHHHHHHHHHHHH-------------------------------------------HTTCSSHHHHHHHHHHH
T ss_pred HHH-HHhHHHHHHHHHHHHH-------------------------------------------HcCCCCHHHHHHHHHHH
Confidence 111 000 011111111 12233444445556666
Q ss_pred HHHhHhhhHHHHhcChhHH-HHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcch--hh-hhhh----hhhhhhhH
Q 002126 309 SEIGQAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDA--SI-AKNK----KHVEDMFF 380 (962)
Q Consensus 309 ~~~~e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~--~~-~~~~----~~~~~~~~ 380 (962)
..+++.+...+.. +.. .+++.++.+...+ +.++...+++||..+.+....... +. .... .......+
T Consensus 242 ~~l~~~~~~~~~~---~~~~~l~~~~~~~~~~~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (876)
T 1qgr_A 242 VKIMSLYYQYMET---YMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316 (876)
T ss_dssp HHHHHHSGGGCHH---HHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHH
T ss_pred HHHHHHhHHHHHH---HHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHH
Confidence 6666655443321 222 4567777776664 577899999999999875421110 00 0000 01122345
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHH
Q 002126 381 SVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETK 460 (962)
Q Consensus 381 ~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~ 460 (962)
+.+.+++..++..+...+++ ++++++ ..|+...+++..++...|.. ++..++..+... ..+.+|+..+++
T Consensus 317 ~~~~~ll~~ll~~l~~~~~d-------~~~~~~-~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l~~~-l~~~~~~~r~~a 386 (876)
T 1qgr_A 317 GALQYLVPILTQTLTKQDEN-------DDDDDW-NPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEH-IKNPDWRYRDAA 386 (876)
T ss_dssp HHHHHHHHHHHHHTTCCCSS-------CCTTCC-CHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHH-TTCSSHHHHHHH
T ss_pred HHHHHHhHHHHHHhhccccc-------cccccc-HHHHHHHHHHHHHHHHCcHh-hHHHHHHHHHHH-ccCCChHHHHHH
Confidence 66788888888888643221 111222 57778888888888777743 344444333211 124579999999
Q ss_pred HHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---ChhchHHHHHHHHHh
Q 002126 461 LFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAG 537 (962)
Q Consensus 461 Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~---~p~~L~~vL~~l~~~ 537 (962)
+++++.+++.+.++.-...++.++..+.....++... +|.++ +.++|+|++++.. ++.+++.+++.++..
T Consensus 387 ~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~------vr~~a-~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~ 459 (876)
T 1qgr_A 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV------VRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (876)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH------HHHHH-HHHHHHHHHHCGGGTSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHH------HHHHH-HHHHHHHHHhCchhcccHHHHHHHHHHHHHH
Confidence 9999999987652110001344444433333444322 56655 5999999999876 568999999999999
Q ss_pred ccc-CchhHHHHHHHHHHHHHhh--------------cccCCCccHHHHHHHH-HHHHhcCC-ChhhHHHHHHHHHHHhc
Q 002126 538 ISE-AVSSNACASALRKICEDAS--------------ALIDEPSNLEILMWIG-EALEKRHL-PLEDEEEVVGAISLILG 600 (962)
Q Consensus 538 l~~-~~~~~~Aa~al~~lc~~c~--------------~~l~~p~~~~~l~~~~-~~l~~~~l-~~~~~~~l~eai~~vi~ 600 (962)
+.+ +.++..|+.++..+|+.|+ ..+. | +++.+.... ..+..... +..-+..++++++.++.
T Consensus 460 l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~ 537 (876)
T 1qgr_A 460 LSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS-S-SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK 537 (876)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST-T-THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhh-H-hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHH
Confidence 987 4588999999999999987 1233 3 555444433 33322211 23456789999999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHH
Q 002126 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFAL 680 (962)
Q Consensus 601 ~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~ 680 (962)
..+.+ ...++..++.+++..+...+.-........++..+..... ..+..++.+.+.+.. ..+.++
T Consensus 538 ~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~l~~l~~~~~~---------~~~~~~ 603 (876)
T 1qgr_A 538 NSAKD--CYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQS---LLCATLQNVLRKVQH---------QDALQI 603 (876)
T ss_dssp TCCST--THHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHH---HHHHHHHHHHTTSCH---------HHHHTT
T ss_pred HCchh--hHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHH---HHHHHHHHHHHHhCh---------hhhhHH
Confidence 98864 4678899999999988876432111000111111111011 123334444443320 112335
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhh-cC--cchHHHHHHHHHHHhc
Q 002126 681 LRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSF-QN--HECYIRTASVVIEEFG 757 (962)
Q Consensus 681 ~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~-~~--~~~~L~l~~~lv~~~g 757 (962)
+..++|.+..++.. ..+...+.+.++.++...+..++..+.|+++.++..+...+... .+ ....+.+++.++...|
T Consensus 604 ~~~l~~~l~~~l~~-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 682 (876)
T 1qgr_A 604 SDVVMASLLRMFQS-TAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ 682 (876)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHh-ccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence 56777777777652 21124688899999999999999888898888887777655422 11 1224667777777777
Q ss_pred CCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCc-
Q 002126 758 HKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH- 836 (962)
Q Consensus 758 ~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e- 836 (962)
. .+.+.+..++..+ +..+.+ .+.++++....+..++.+....+..+. ++++.+++....++..+.
T Consensus 683 ~--~~~~~~~~i~~~l-----~~~l~~---~~~~~~~~~~~~~~l~~i~~~~g~~~~----~~l~~~~~~l~~~~~~~~~ 748 (876)
T 1qgr_A 683 S--NIIPFCDEVMQLL-----LENLGN---ENVHRSVKPQILSVFGDIALAIGGEFK----KYLEVVLNTLQQASQAQVD 748 (876)
T ss_dssp G--GGHHHHHHHHHHH-----HHHHTC---TTSCGGGHHHHHHHHHHHHHHHGGGGG----GGHHHHHHHHHHHHTCCCC
T ss_pred H--hhhhhHHHHHHHH-----HHHhCC---ccccHHhhHHHHHHHHHHHHHhchhHH----HHHHHHHHHHHHHHhccCC
Confidence 4 2333333333322 233332 134678999999999999998876643 356777777666665431
Q ss_pred ----------hhHHHHHHHHHHHHHhh
Q 002126 837 ----------RGAALAAMSYLSCFLEE 853 (962)
Q Consensus 837 ----------~~~~~a~~~fl~~li~~ 853 (962)
.....++++.+..++..
T Consensus 749 ~~d~~~~~~~~~~r~~~~~~~~~i~~~ 775 (876)
T 1qgr_A 749 KSDYDMVDYLNELRESCLEAYTGIVQG 775 (876)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13455566777666654
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.87 E-value=5.7e-20 Score=213.05 Aligned_cols=432 Identities=13% Similarity=0.064 Sum_probs=291.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhc--ChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcC---------
Q 002126 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQ--TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE--------- 77 (962)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~--s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~--------- 77 (962)
+.+++..++ ++|++.|++|+++|+++++ .|+.|....++|...+ .+.++|.+|+.+|++++.++
T Consensus 3 l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~----~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 3 LITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPG----NSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----SCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 567777766 6789999999999999998 4999999999998642 35799999999999999877
Q ss_pred --CCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-c--cCCchHHHHHHHhhcccCCCcchHHHHHH
Q 002126 78 --GYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (962)
Q Consensus 78 --~~~l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~-~--~W~~~i~~li~~~~~~~~~~~~~~~lL~i 152 (962)
|..++++.+..||+.|++.+.. .++.+ +++|.+++.++.+. + .||+.++.++..+++...++......+.+
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~---~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEA 153 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTC---CCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCC---CCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 5789999999999999998753 34556 99999999999875 3 69999999999997621034456788999
Q ss_pred HhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccc
Q 002126 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (962)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~ 232 (962)
|..++++... . . +....+.++..+.+.+.... ++..++..+++|+.+|+.+.
T Consensus 154 l~~l~~~~~~-~-----~-----------~~~~~~~ll~~l~~~l~~~~------~~~~vr~~a~~~l~~~~~~~----- 205 (462)
T 1ibr_B 154 IGYICQDIDP-E-----Q-----------LQDKSNEILTAIIQGMRKEE------PSNNVKLAATNALLNSLEFT----- 205 (462)
T ss_dssp HHHHHHHSCG-G-----G-----------TGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHTTTT-----
T ss_pred HHHHHHhCCc-h-----h-----------hHhHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHHHHHH-----
Confidence 9999988631 0 0 22345567777777665421 13578999999999998642
Q ss_pred cchhhhhcchHHHHHHhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHh
Q 002126 233 SQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIG 312 (962)
Q Consensus 233 ~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~ 312 (962)
.. .... .. +...+++.+. ....+.|.+.....++.+..++
T Consensus 206 ~~-~~~~--------------~~-----------------~~~~l~~~l~--------~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 206 KA-NFDK--------------ES-----------------ERHFIMQVVC--------EATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp HH-HHTS--------------HH-----------------HHHHHHHHHH--------HHTTCSSHHHHHHHHHHHHHHH
T ss_pred HH-hhhh--------------hH-----------------HHHHHHHHHH--------HhcCCCCHHHHHHHHHHHHHHH
Confidence 10 0000 00 0000111111 1234556677778888888888
Q ss_pred HhhhHHHHhcChhHH-HHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhh----hhh---hhhhhhhHHHHH
Q 002126 313 QAAPSLIVEASPEAL-ALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIA----KNK---KHVEDMFFSVFS 384 (962)
Q Consensus 313 e~~~~~l~~~~~~~~-~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~----~~~---~~~~~~~~~~~~ 384 (962)
+.+...+... +. .+++.++.+.... +.++...+++||..+.+.......... ..+ ......+++++.
T Consensus 246 ~~~~~~~~~~---~~~~l~~~~~~~~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 246 SLYYQYMETY---MGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp HHCGGGCTTT---TTTTHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence 8876555432 22 4566666666654 578889999999999876421110000 000 012234466778
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHH
Q 002126 385 ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFAL 464 (962)
Q Consensus 385 ~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l 464 (962)
.++..+++.+.-.+++ ++++++ ..|+...+++..++..+|. .++..++..+... ..+.+|+..+++++++
T Consensus 321 ~l~p~l~~~l~~~d~d-------~~~~~~-~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~-l~~~~~~~r~aal~~l 390 (462)
T 1ibr_B 321 YLVPILTQTLTKQDEN-------DDDDDW-NPCKAAGVCLMLLATCCED-DIVPHVLPFIKEH-IKNPDWRYRDAAVMAF 390 (462)
T ss_dssp HHHHHHHHHTTCCCSS-------CCTTCC-SHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHH-TTCSSHHHHHHHHHHH
T ss_pred hccHHHHHHHHhcccc-------cccccc-hHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH-hcCCChHHHHHHHHHH
Confidence 8888888777532211 011222 5688888999999998884 3454444433221 1246899999999999
Q ss_pred HhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh---ChhchHHHHHHHHHhcc
Q 002126 465 NVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA---FQTNARPLLLFLAAGIS 539 (962)
Q Consensus 465 ~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~---~p~~L~~vL~~l~~~l~ 539 (962)
+++++++..+.-...++.++..+.....++... ||.++ +.++|+|++|+.. ++.|++++++.++.+|.
T Consensus 391 ~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~------Vr~~a-~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 391 GCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV------VRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHH------HHHHH-HHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHH-HHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 999987653211112466777666555555432 67766 5999999999987 56899999999998764
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.46 E-value=3.4e-10 Score=147.15 Aligned_cols=671 Identities=11% Similarity=0.100 Sum_probs=363.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCh----------HHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhc
Q 002126 7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQTD----------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQN 76 (962)
Q Consensus 7 ~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~----------~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~ 76 (962)
.++.+.++.+- ++|+..|.+|.+.|.+.-+.+ .--......|.. .+.++|..|+..|..-...
T Consensus 6 ~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d------~~~~vR~~A~~~L~~l~~~ 78 (1230)
T 1u6g_C 6 YHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED------KNGEVQNLAVKCLGPLVSK 78 (1230)
T ss_dssp HHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC------SSHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHh
Confidence 46777777765 679999999988887654332 222233344432 2479999999999877653
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhc-----------cCCchHHHHHHHhhcccCCCcc
Q 002126 77 EGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV-----------EHGKPIEKLFYSLQNLQSQDNG 145 (962)
Q Consensus 77 ~~~~l~~e~~~~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~-----------~W~~~i~~li~~~~~~~~~~~~ 145 (962)
++++....+++.|+..+. ..+..||...+.+|+.++-... .|+..++.++..+... .+...
T Consensus 79 ----~~~~~~~~i~~~Ll~~l~---d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~ 150 (1230)
T 1u6g_C 79 ----VKEYQVETIVDTLCTNML---SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSV 150 (1230)
T ss_dssp ----SCHHHHHHHHHHHHHHTT---CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHH
T ss_pred ----CCHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHH
Confidence 677777778777777653 3445678888889998876554 2888888888888631 12334
Q ss_pred hHHHHHHHhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHH
Q 002126 146 NMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVR 225 (962)
Q Consensus 146 ~~~lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~ 225 (962)
....++++..+.+...+ . +. ...+.++..+...+.. +...++..+++|+.+.+.
T Consensus 151 ~~~al~~l~~~~~~~~~--~----l~------------~~~~~ll~~l~~~L~~--------~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGG--L----LV------------NFHPSILTCLLPQLTS--------PRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp HHHHHHHHHHHHHHTCS--S----CT------------TTHHHHHHHHGGGGGC--------SSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHh--H----HH------------HHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHHHH
Confidence 45666777666655431 1 11 1234455555544443 234688888888888776
Q ss_pred hcccccccchhhhhcchHHHHHHhcCCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHH
Q 002126 226 AGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLA 305 (962)
Q Consensus 226 ~~~~~~~~~~~~~~~~ll~~~~~~L~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~ 305 (962)
.. +... ...+++.+++.|.++ .+.+.....+
T Consensus 205 ~~-----~~~~--~~~~l~~l~~~L~~~------------------------------------------~~~~~r~~a~ 235 (1230)
T 1u6g_C 205 SC-----GNIV--FVDLIEHLLSELSKN------------------------------------------DSMSTTRTYI 235 (1230)
T ss_dssp TC-----------CTTHHHHHHHHHHHT------------------------------------------CSSCSCTTHH
T ss_pred hc-----CHHH--HHHHHHHHHHHhccC------------------------------------------CchhHHHHHH
Confidence 42 1111 112333222222110 0011112233
Q ss_pred HHHHHHhHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHH
Q 002126 306 CLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSA 385 (962)
Q Consensus 306 ~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~ 385 (962)
..+..+++.....+. ++...+++.++.....+ +.++.+.++..|..+.... .+.+.|++.+
T Consensus 236 ~~l~~l~~~~~~~~~---~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~--------------~~~~~~~l~~ 296 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIG---EYLEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRC--------------PKEVYPHVST 296 (1230)
T ss_dssp HHHHHHHHHSSGGGT---TSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCT--------------TCCCHHHHHH
T ss_pred HHHHHHHHHhHHHHH---HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHC--------------hHHHHHhHHH
Confidence 333433333222221 12234566667766654 5677777777776665532 2346788999
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHH--HHHHHHhhhcCCCCCCCchhhhHHHHH
Q 002126 386 LLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATF--IQKVFFGSWGSANVPIPWKEVETKLFA 463 (962)
Q Consensus 386 L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~--l~~~~~~l~~~~~~~~~W~~~Ea~Lf~ 463 (962)
++..+++.+.++++. ..+.+.+..+++.+. + +.+.. ....+. ......|.-.++++-+
T Consensus 297 li~~ll~~l~~d~~~-~~~~d~~~~~~~~~~----~----------~~~~~~~~~~~~~-----~~~d~~~~vR~~A~~~ 356 (1230)
T 1u6g_C 297 IINICLKYLTYDPNY-NYDDEDEDENAMDAD----G----------GDDDDQGSDDEYS-----DDDDMSWKVRRAAAKC 356 (1230)
T ss_dssp HHHHHTTCCCCC--------------------------------------------------------CTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCC-CCccccccccccccc----c----------cccchhhcccccc-----cccccCHHHHHHHHHH
Confidence 999999999886542 100000000111100 0 00000 000000 0124569989999999
Q ss_pred HHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHH-------HHH-------------hC
Q 002126 464 LNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSK-------WIS-------------AF 523 (962)
Q Consensus 464 l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~-------wl~-------------~~ 523 (962)
+..++...++.-.. .++.++..+......+... +|..+ +..++.... |.. .-
T Consensus 357 l~~l~~~~~~~~~~-~~~~l~~~l~~~l~d~~~~------Vr~~a-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (1230)
T 1u6g_C 357 LDAVVSTRHEMLPE-FYKTVSPALISRFKEREEN------VKADV-FHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTML 428 (1230)
T ss_dssp HHHHHTTCCTTHHH-HHTTTHHHHHSTTSCSSSH------HHHHH-HHHHHHHHHHHCCC------------CCCHHHHH
T ss_pred HHHHHHhchhHHHH-HHHHHHHHHHHHcCCCchH------HHHHH-HHHHHHHHHHhccccccccCccccccccchHHHH
Confidence 99988744310000 0122222222222222211 33322 233333222 111 01
Q ss_pred hhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHH-HHHHHhcCCChhhHHHHHHHHHHHhc
Q 002126 524 QTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWI-GEALEKRHLPLEDEEEVVGAISLILG 600 (962)
Q Consensus 524 p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~-~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (962)
..+++.+++.+.+.+.++. ++..++.++..++..|+..+. + +++.+... ...+....-....+...+..++.++.
T Consensus 429 ~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~-~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 429 QSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT-Q-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp HHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG-G-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH-H-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH
Confidence 2467788888888888754 788899999999999887663 2 55544443 34433222234667778888888887
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHH
Q 002126 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFAL 680 (962)
Q Consensus 601 ~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~ 680 (962)
..+.+. ...++..++..++..+ ... +... . ...+..++.+.+.+.... ......+.++
T Consensus 507 ~~~~~~-~~~~l~~llp~L~~~l----~d~-------~~~v----~---~~al~~l~~l~~~~~~~~---~~~~~~~~~~ 564 (1230)
T 1u6g_C 507 NHSPQV-FHPHVQALVPPVVACV----GDP-------FYKI----T---SEALLVTQQLVKVIRPLD---QPSSFDATPY 564 (1230)
T ss_dssp SSCGGG-GHHHHTTTHHHHHHHH----TCS-------SHHH----H---HHHHHHHHHHHHHHCCSS---SCCCCCCHHH
T ss_pred hCCHHH-HHhHHHHHHHHHHHHH----ccc-------chHH----H---HHHHHHHHHHHHHhcCcc---cccccchHHH
Confidence 766543 3566766666655433 211 1110 0 112333443443333200 0112335567
Q ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcCCC
Q 002126 681 LRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKD 760 (962)
Q Consensus 681 ~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~ 760 (962)
++.++|.+...+. ....+.++.+.+..+++..+...|..+.+.+|.+++.+.............+...+.+...-++ .
T Consensus 565 ~~~ll~~ll~~l~-~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~-~ 642 (1230)
T 1u6g_C 565 IKDLFTCTIKRLK-AADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLK-I 642 (1230)
T ss_dssp HHHHHHHHHHHHS-CSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSC-C
T ss_pred HHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccc-c
Confidence 8888998888775 3456778999999999999999999888888988888776543210001122333333221111 1
Q ss_pred CccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHH
Q 002126 761 EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAA 840 (962)
Q Consensus 761 ~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~ 840 (962)
+..+.+..++..+.. .+. ++++++.......+.+++++++..+.. +.+..++...+..+...+.+..
T Consensus 643 ~~~~~~~~i~~~L~~-----~l~-----~~~~~~r~~a~~al~~l~~~~~~~~~~---~~v~~~l~~ll~ll~~~D~~~~ 709 (1230)
T 1u6g_C 643 DLRPVLGEGVPILAS-----FLR-----KNQRALKLGTLSALDILIKNYSDSLTA---AMIDAVLDELPPLISESDMHVS 709 (1230)
T ss_dssp CCHHHHHHHHHHHHH-----HTT-----SCCHHHHHHHHHHHHHHHHHCCTTCCH---HHHHHHHTTCGGGSCTTCHHHH
T ss_pred chHHHHHHHHHHHHH-----HHH-----hCCHHHHHHHHHHHHHHHhcccccCCH---HHHHHHHHHHHhhcCcchHHHH
Confidence 222233333332221 121 467889999999999999998754321 2333343322222334566778
Q ss_pred HHHHHHHHHHHhh
Q 002126 841 LAAMSYLSCFLEE 853 (962)
Q Consensus 841 ~a~~~fl~~li~~ 853 (962)
..+.++|..++..
T Consensus 710 ~~~~~~L~~l~~~ 722 (1230)
T 1u6g_C 710 QMAISFLTTLAKV 722 (1230)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHh
Confidence 8999999988854
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.37 E-value=4.7e-07 Score=113.02 Aligned_cols=543 Identities=9% Similarity=0.033 Sum_probs=306.9
Q ss_pred hhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC---CcHHHHHHHHHHHHhcCCC-------hhHHHHh
Q 002126 210 HDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEG-------LPQALLC 279 (962)
Q Consensus 210 ~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~---~~~~~a~~~l~eil~~~~~-------~~~~l~~ 279 (962)
..++..+..++..-.... .|.. ....+++.+++.+.++ ...+.++.++..+.....+ +...+++
T Consensus 109 ~~vr~~~~~~l~~i~~~~----~p~~--~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~ 182 (861)
T 2bpt_A 109 PRIANAAAQLIAAIADIE----LPHG--AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI 182 (861)
T ss_dssp HHHHHHHHHHHHHHHHHH----GGGT--CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhh----Cccc--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Confidence 457777777777666542 1211 1456889999888764 4567888888888775321 1222333
Q ss_pred hhhhhHHhhhhhhhccC--cHhHHhhHHHHHHHHhHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHH
Q 002126 280 RVPFLKELLLLPALTDG--DEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (962)
Q Consensus 280 ~~~~l~~~~~~~~~~~~--d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l 357 (962)
.+. ..+.++ +.+......+.+..+.+.....+. .......+++.+..+...+ +.++...++.-...+
T Consensus 183 ~l~--------~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~--~~~~r~~a~~~l~~l 251 (861)
T 2bpt_A 183 AIV--------QGAQSTETSKAVRLAALNALADSLIFIKNNME-REGERNYLMQVVCEATQAE--DIEVQAAAFGCLCKI 251 (861)
T ss_dssp HHH--------HHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHT-SHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHH
T ss_pred HHH--------HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHcc-ChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 222 123333 444444444555544322111111 0001123455555655554 566777777666555
Q ss_pred HHHHhhcchhhhhhhhhhhhhhHHHHH-HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcC----
Q 002126 358 ASYILGLDASIAKNKKHVEDMFFSVFS-ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLR---- 432 (962)
Q Consensus 358 ~e~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~---- 432 (962)
.+.. ...+.+++. .++..++.-+. + . + .+.|....+.+..++....
T Consensus 252 ~~~~--------------~~~~~~~l~~~l~~~~~~~~~---~---------~-~--~~vr~~a~~~l~~l~~~~~~~~~ 302 (861)
T 2bpt_A 252 MSKY--------------YTFMKPYMEQALYALTIATMK---S---------P-N--DKVASMTVEFWSTICEEEIDIAY 302 (861)
T ss_dssp HHHH--------------GGGCHHHHHHTHHHHHHHHTT---C---------S-S--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHHHHHHHHHHHHHc---C---------C-c--HHHHHHHHHHHHHHHHHHHhhhh
Confidence 5432 123445555 55555544331 0 0 1 2456555566555544321
Q ss_pred -----------------c--HHHHHHHHHhhhcCCC--CCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhc
Q 002126 433 -----------------S--ATFIQKVFFGSWGSAN--VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS 491 (962)
Q Consensus 433 -----------------~--~~~l~~~~~~l~~~~~--~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~ 491 (962)
. ..++..++..+..... ...+|....++.-++..++..+.+ . .++.++..+....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~---~~~~l~~~l~~~l 378 (861)
T 2bpt_A 303 ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-H---ILEPVLEFVEQNI 378 (861)
T ss_dssp HHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-G---GHHHHHHHHHHHT
T ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-h---HHHHHHHHHHHHc
Confidence 0 1122333333322110 124598889999999998887752 2 1577777766655
Q ss_pred cCchhhhhhHHHHHHHHHHHHHHhhHHHHH--hChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCcc
Q 002126 492 ASRSEELKGFMHIVYRSLADVIGSYSKWIS--AFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSN 567 (962)
Q Consensus 492 ~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~--~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~ 567 (962)
.++..+ +|.++ +..+|..++... .-..+++.+++.++..+.++. ++.+|+.++.++|..+...+....+
T Consensus 379 ~~~~~~------~r~~a-~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 379 TADNWR------NREAA-VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp TCSSHH------HHHHH-HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred CCCChh------HHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 444322 35545 478888775431 123577889999999998654 8999999999999998876532335
Q ss_pred HHHHHH-HHHHHHhcCCChhhHHHHHHHHHHHhccCCc--hHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHH
Q 002126 568 LEILMW-IGEALEKRHLPLEDEEEVVGAISLILGSVSN--KELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQ 644 (962)
Q Consensus 568 ~~~l~~-~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~--~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~ 644 (962)
++.+.. +...+. . +...+.....+++.++...++ .+....++ .+++..+.+.+..... ++...
T Consensus 452 ~~~~l~~l~~~l~-~--~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~----~~il~~L~~~l~~~d~-----~~~vr-- 517 (861)
T 2bpt_A 452 LPGVVQACLIGLQ-D--HPKVATNCSWTIINLVEQLAEATPSPIYNFY----PALVDGLIGAANRIDN-----EFNAR-- 517 (861)
T ss_dssp HHHHHHHHHHHHT-S--CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH----HHHHHHHHHHHTCSCC-----GGGHH--
T ss_pred HHHHHHHHHHHhc-c--ChHHHHHHHHHHHHHHHhcccccchhhHHHH----HHHHHHHHHHHhCcCc-----chHHH--
Confidence 544443 334432 2 256677777888888765431 11122333 3444455555543211 01110
Q ss_pred HhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhh-------------ccchHHHHHHHHHHH
Q 002126 645 ILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEH-------------MENGNLSTAACRALS 711 (962)
Q Consensus 645 ~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~-------------~~~~~v~e~~c~~~~ 711 (962)
...+..++.+.+.... .+.+++.+++|.+...+. .. ....++...++.++.
T Consensus 518 -----~~a~~al~~l~~~~~~----------~~~~~~~~l~~~l~~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 581 (861)
T 2bpt_A 518 -----ASAFSALTTMVEYATD----------TVAETSASISTFVMDKLG-QTMSVDENQLTLEDAQSLQELQSNILTVLA 581 (861)
T ss_dssp -----HHHHHHHHHHHHHCCG----------GGHHHHHHHHHHHHHHHH-HHTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcch----------hhHHHHHHHHHHHHHHHH-HHHhhhcccCChhhHHHHHHHHHHHHHHHH
Confidence 1123334444433221 134566777887776665 22 113456678999999
Q ss_pred HHHHhhhhhhHhhHHHHHHHHHHhhhhhcC---cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCC
Q 002126 712 LAIQSSGQHFVTLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYIC 788 (962)
Q Consensus 712 ~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~---~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~ 788 (962)
..++.+|.++.|+++.+++.+...+..... ....+...+.++..+|. .+.+.+..++..+. ..+.
T Consensus 582 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~-----~~l~----- 649 (861)
T 2bpt_A 582 AVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSPYLL-----KALN----- 649 (861)
T ss_dssp HHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHH-----HHHH-----
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHH-----HHhc-----
Confidence 999999998889999888888876653211 12245566777777775 23344444333222 2232
Q ss_pred CCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCc--hhHHHHHHHHHHHHHhhhh
Q 002126 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMH--RGAALAAMSYLSCFLEECL 855 (962)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e--~~~~~a~~~fl~~li~~~~ 855 (962)
..++++....+.++..+.+.....+. +.+..+++..+..+...+ ++...+++..+..++...+
T Consensus 650 ~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 650 QVDSPVSITAVGFIADISNSLEEDFR----RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTGGGGH----HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred cccHHHHHHHHHHHHHHHHHhchhcc----chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 36788999999999999988765433 346667777777776543 7777788888888776543
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.33 E-value=1e-06 Score=110.24 Aligned_cols=542 Identities=10% Similarity=0.074 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC----CcHHHHHHHHHHHHhcCC-ChhHHHHhhhhhhHHhh
Q 002126 214 RKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ----SSFDVAIEVLVELVGRHE-GLPQALLCRVPFLKELL 288 (962)
Q Consensus 214 ~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~----~~~~~a~~~l~eil~~~~-~~~~~l~~~~~~l~~~~ 288 (962)
..+..|+..-.... .+.. ....+++.+++.+.++ .....++.++..++.... +.....++.++. .+
T Consensus 107 ~~~~~~l~~i~~~~----~~~~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~---~l 177 (876)
T 1qgr_A 107 SSASQCVAGIACAE----IPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILT---AI 177 (876)
T ss_dssp CHHHHHHHHHHHHH----GGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHH---HH
T ss_pred HHHHHHHHHHHHhh----Cccc--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHH---HH
Confidence 56666766665532 1212 2456888888888765 346778888888776431 111111122221 11
Q ss_pred hhhhhccC--cHhHHhhHHHHHHHHhHhhhHHHHhcChhH-HHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcc
Q 002126 289 LLPALTDG--DEKVIGGLACLMSEIGQAAPSLIVEASPEA-LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD 365 (962)
Q Consensus 289 ~~~~~~~~--d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~-~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~ 365 (962)
. ..+.++ +.+......+.+..+.+.....+. .... ..+++.+..+...+ |.++...+++....+.+...
T Consensus 178 ~-~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~il~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~--- 249 (876)
T 1qgr_A 178 I-QGMRKEEPSNNVKLAATNALLNSLEFTKANFD--KESERHFIMQVVCEATQCP--DTRVRVAALQNLVKIMSLYY--- 249 (876)
T ss_dssp H-HHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHT--SHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSG---
T ss_pred H-HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhH---
Confidence 1 123333 334333344445444332111111 1111 12466666665554 56677777777776655321
Q ss_pred hhhhhhhhhhhhhhHHHHH-HHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhc-------------
Q 002126 366 ASIAKNKKHVEDMFFSVFS-ALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLL------------- 431 (962)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~-~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il------------- 431 (962)
..+.|++. .+++.++.-+..++ .+.|....+++..++...
T Consensus 250 -----------~~~~~~~~~~l~~~~~~~~~~~~---------------~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 250 -----------QYMETYMGPALFAITIEAMKSDI---------------DEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp -----------GGCHHHHTTTHHHHHHHHHTCSS---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHHhcCCc---------------hHHHHHHHHHHHHHHHHHHhHhhhhcccccc
Confidence 23455555 56665555442110 122333222222222110
Q ss_pred -----C---c------HHHHHHHHHhhhcCC--CCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCch
Q 002126 432 -----R---S------ATFIQKVFFGSWGSA--NVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRS 495 (962)
Q Consensus 432 -----~---~------~~~l~~~~~~l~~~~--~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~ 495 (962)
. . +.++..++..+.... ..+.+|....++..++..+++.+.+ . . ++.++..+......+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~-~-~~~~l~~l~~~l~~~~ 379 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D-I-VPHVLPFIKEHIKNPD 379 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G-G-HHHHHHHHHHHTTCSS
T ss_pred CCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--h-h-HHHHHHHHHHHccCCC
Confidence 0 0 112223333332111 1135799999999999999988763 2 1 5667776655444443
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHHHH--hChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHH
Q 002126 496 EELKGFMHIVYRSLADVIGSYSKWIS--AFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEIL 571 (962)
Q Consensus 496 ~~~~~~~~v~~~t~~~~ig~ys~wl~--~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l 571 (962)
.+ +|.++ +..+|.+++... .-..+++.+++.++..+.++. ++.+|+.++.++|+.+......+.+++.+
T Consensus 380 ~~------~r~~a-~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~ 452 (876)
T 1qgr_A 380 WR------YRDAA-VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452 (876)
T ss_dssp HH------HHHHH-HHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHH
T ss_pred hH------HHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHH
Confidence 22 46655 589998886542 112478889999999998754 89999999999999988754112344433
Q ss_pred -HHHHHHHHhcCCChhhHHHHHHHHHHHhccCC------------chHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Q 002126 572 -MWIGEALEKRHLPLEDEEEVVGAISLILGSVS------------NKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHN 638 (962)
Q Consensus 572 -~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp------------~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~ 638 (962)
..+...+.. +...+.....+++.++.... ..+....++ .+++..+.+.+...... +
T Consensus 453 l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~----~~il~~L~~~l~~~~~~----~ 521 (876)
T 1qgr_A 453 LQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF----ELIVQKLLETTDRPDGH----Q 521 (876)
T ss_dssp HHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH----HHHHHHHHHHTTSCSSC----S
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH----HHHHHHHHHHHhCcCcc----h
Confidence 334444322 25567777888888875532 001112333 34444444544432110 0
Q ss_pred chhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhh--------c-cc----hHHHHH
Q 002126 639 PATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEH--------M-EN----GNLSTA 705 (962)
Q Consensus 639 ~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~--------~-~~----~~v~e~ 705 (962)
... . ...++.++.+.+.... ....++..++|.+...+. .. . .| .++.+.
T Consensus 522 ~~~-----r--~~~~~~l~~l~~~~~~----------~~~~~~~~l~~~l~~~l~-~~~~~~~~~~~~~d~~~~~~~~~~ 583 (876)
T 1qgr_A 522 NNL-----R--SSAYESLMEIVKNSAK----------DCYPAVQKTTLVIMERLQ-QVLQMESHIQSTSDRIQFNDLQSL 583 (876)
T ss_dssp TTH-----H--HHHHHHHHHHHHTCCS----------TTHHHHHHHHHHHHHHHH-HHHTTTTSCCSTTHHHHHHHHHHH
T ss_pred hhH-----H--HHHHHHHHHHHHHCch----------hhHHHHHHHHHHHHHHHH-HHHHHHhccCChhhHHHHHHHHHH
Confidence 011 0 1234555555544321 133456677777666554 11 1 12 446678
Q ss_pred HHHHHHHHHHhhh-hhhHhhHHHHHHHHHHhhhhhcC----cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHH
Q 002126 706 ACRALSLAIQSSG-QHFVTLLPQVLDCLSTNFVSFQN----HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVR 780 (962)
Q Consensus 706 ~c~~~~~~~~~l~-~~~~p~l~~~~~~l~~~f~~~~~----~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~ 780 (962)
+|.++...+..+| ..+.|+++.+++.+...+..... ....+.+++.++...|. .+.+.+..++..+..
T Consensus 584 ~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~--~~~~~~~~~~~~l~~----- 656 (876)
T 1qgr_A 584 LCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG--EFLKYMEAFKPFLGI----- 656 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG--GGGGGHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH-----
Confidence 9999999999999 88899999999988877653210 12245667777776664 344555554443222
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhcc--CchhHHHHHHHHHHHHHhh
Q 002126 781 ALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTA--MHRGAALAAMSYLSCFLEE 853 (962)
Q Consensus 781 ~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~--~e~~~~~a~~~fl~~li~~ 853 (962)
.+.. .+++++....+..+..+.+..+..+. +.++.++...+..+.. .+++....++..+..+...
T Consensus 657 ~l~~----~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~ 723 (876)
T 1qgr_A 657 GLKN----YAEYQVCLAAVGLVGDLCRALQSNII----PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALA 723 (876)
T ss_dssp HHHH----CTTHHHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH
T ss_pred HHcC----cchHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHH
Confidence 2222 24788999999999999988765433 3456677777777765 3566777777777777654
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.30 E-value=3.5e-07 Score=113.94 Aligned_cols=514 Identities=11% Similarity=0.081 Sum_probs=293.8
Q ss_pred hhhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCCh---------hHHH
Q 002126 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGL---------PQAL 277 (962)
Q Consensus 209 ~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eil~~~~~~---------~~~l 277 (962)
+..++..+..|+..-.... +.. ....+++.+++.+.++ ...+.++.++..++....+. ...+
T Consensus 103 ~~~vr~~~a~~i~~ia~~~-----~~~--~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~i 175 (852)
T 4fdd_A 103 SPLIRATVGILITTIASKG-----ELQ--NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 175 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHT-----TTT--TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc-----Ccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHH
Confidence 3467888888888776643 111 2567899999999875 44678888888877654332 2233
Q ss_pred HhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHH
Q 002126 278 LCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (962)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l 357 (962)
+|.+.. .+.+.+.+....-++.+..+.......+.. ....+++.++.+.+.+ +.++...++.-+..+
T Consensus 176 l~~l~~--------~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~---~~~~~l~~l~~~~~d~--~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 176 IPKFLQ--------FFKHSSPKIRSHAVACVNQFIISRTQALML---HIDSFIENLFALAGDE--EPEVRKNVCRALVML 242 (852)
T ss_dssp HHHHTT--------TTTCSSHHHHHHHHHHHHTTTTTTCHHHHT---SHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHH
T ss_pred HHHHHH--------HhcCCCHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 333322 334445444333344444333222111111 1235677777777765 567777777776666
Q ss_pred HHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH------hc
Q 002126 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQ------LL 431 (962)
Q Consensus 358 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~------il 431 (962)
.+.. ...+.+++..++..++.-+.-+ + .+.|....+.+..++. .+
T Consensus 243 ~~~~--------------~~~~~~~l~~l~~~l~~~~~~~-------------~--~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 243 LEVR--------------MDRLLPHMHNIVEYMLQRTQDQ-------------D--ENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp HHHC--------------HHHHGGGHHHHHHHHHHHHTCS-------------S--HHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHhC--------------HHHHHHHHHHHHHHHHHHccCC-------------c--HHHHHHHHHHHHHHhcchhHHHHH
Confidence 5531 1234556667777776654311 1 2345555555555442 11
Q ss_pred Cc--HHHHHHHHHhhh----------cC--CC-CC----CCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhcc
Q 002126 432 RS--ATFIQKVFFGSW----------GS--AN-VP----IPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSA 492 (962)
Q Consensus 432 ~~--~~~l~~~~~~l~----------~~--~~-~~----~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~ 492 (962)
.+ +.++..++..+. .. .. .. .+|.-..++.-++..+++...+ . .++.++..+.....
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~--~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--E--LLPHILPLLKELLF 369 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--G--GHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--H--HHHHHHHHHHHHhc
Confidence 21 112333333221 11 00 01 5699899999999999988752 2 15777777766554
Q ss_pred CchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-hhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHH
Q 002126 493 SRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLE 569 (962)
Q Consensus 493 ~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~-p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~ 569 (962)
++..+ +|.++ +..+|+.++..... ..+++.+++.+++.+.++. ++..|+.++.++|+.+......+ +++
T Consensus 370 ~~~~~------~R~aa-~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-~~~ 441 (852)
T 4fdd_A 370 HHEWV------VKESG-ILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLK 441 (852)
T ss_dssp CSSHH------HHHHH-HHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT-THH
T ss_pred CCCHH------HHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH-HHH
Confidence 44322 46655 48999988765432 2488999999999998754 89999999999999887643322 444
Q ss_pred H-HHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHH
Q 002126 570 I-LMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSS 648 (962)
Q Consensus 570 ~-l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 648 (962)
. +..+...+.. -+...+...+.+++.++...+.+ ...++..++ ..+.++++... ...
T Consensus 442 ~ll~~L~~~L~d--~~~~vr~~a~~aL~~l~~~~~~~--l~~~l~~ll----~~L~~~l~~~~-------~~~------- 499 (852)
T 4fdd_A 442 PLMTELLKRILD--SNKRVQEAACSAFATLEEEACTE--LVPYLAYIL----DTLVFAFSKYQ-------HKN------- 499 (852)
T ss_dssp HHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHGGG--GGGGHHHHH----HHHHHHHHHCC-------HHH-------
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhhHh--hHhHHHHHH----HHHHHHHHHhC-------hHH-------
Confidence 3 3333444322 25678888999999998665432 234444444 44444443221 000
Q ss_pred HHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHhhhhhhHhhHHH
Q 002126 649 ATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHM-ENGNLSTAACRALSLAIQSSGQHFVTLLPQ 727 (962)
Q Consensus 649 ~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~-~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~ 727 (962)
....++.++.+.+...... .. ..+++.++|.+..... ... .+.++ ..+++++..+...+|..+.|++++
T Consensus 500 ~~~~~~ai~~l~~~~~~~~------~~--~~~~~~l~p~l~~~~~-~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~ 569 (852)
T 4fdd_A 500 LLILYDAIGTLADSVGHHL------NK--PEYIQMLMPPLIQKWN-MLKDEDKDL-FPLLECLSSVATALQSGFLPYCEP 569 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGG------CC--HHHHHHHHHHHHHHHH-HSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhh------cc--HHHHHHHHHHHHHHHH-hcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHH
Confidence 1112444454444433221 01 2467788998887765 344 33444 588999999999999998888888
Q ss_pred HHHHHHHhhhhhcCcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcC-CCCCCCCchHHHHHHHHHHHH
Q 002126 728 VLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSS-YICDQEPDLVEAYTNFASTFV 806 (962)
Q Consensus 728 ~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~-~~~~~~pD~~~~~f~l~~~~l 806 (962)
++..++..+..+ +. ... ...... .....+.|+....++++..+.
T Consensus 570 i~~~~~~~l~~~-------------l~--------------------~~~--~~~~~~~~~~~~d~~~~~~~l~~l~~l~ 614 (852)
T 4fdd_A 570 VYQRCVNLVQKT-------------LA--------------------QAM--LNNAQPDQYEAPDKDFMIVALDLLSGLA 614 (852)
T ss_dssp HHHHHHHHHHHH-------------HH--------------------HHH--HHHHCTTTSCCCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------HH--------------------HHH--HhhcCCcccCCCcchHHHHHHHHHHHHH
Confidence 776554433211 00 000 000000 001234566666677777777
Q ss_pred HhhhHHHHhhchhch--HHHHHHHHHhhccCchhHHHHHHHHHHHHHhhh
Q 002126 807 RTSRKEVLAASGALL--EVSFQKAAICCTAMHRGAALAAMSYLSCFLEEC 854 (962)
Q Consensus 807 ~~~p~~~l~~~~~~l--~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~ 854 (962)
+.....+.+ .+ ..+++..+.++..+......++...+.++....
T Consensus 615 ~~l~~~~~~----~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 660 (852)
T 4fdd_A 615 EGLGGNIEQ----LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKAC 660 (852)
T ss_dssp HHHGGGGHH----HHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHhHhHHH----HhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHh
Confidence 765544332 11 235556666676666777888888888877543
No 17
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.29 E-value=7.6e-10 Score=115.88 Aligned_cols=202 Identities=11% Similarity=0.141 Sum_probs=166.4
Q ss_pred HhhHHHHHHHHHHhhhhhcC---cchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHH
Q 002126 722 VTLLPQVLDCLSTNFVSFQN---HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAY 798 (962)
Q Consensus 722 ~p~l~~~~~~l~~~f~~~~~---~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~ 798 (962)
..++||+++.++.+|..+.| .+..|.+.+.+|.++|+ ...+.+...++.+.++| +.++.. ++.++||....|
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~--~i~~~vp~Il~~VFe~T-L~MI~~--df~eyPehR~~F 142 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG--HITAEIPQIFDAVFECT-LNMINK--DFEEYPEHRTNF 142 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGG--GGGGGHHHHHHHHHHHH-HHHHSS--TTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHH-HHHHhc--ccccChHHHHHH
Confidence 35789999999999986533 56789999999999996 45567777888888898 888875 899999999999
Q ss_pred HHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHH
Q 002126 799 TNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVI 878 (962)
Q Consensus 799 f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (962)
|.|+..+..+|+..++..|++.+..++++.+||+++++|++...+++.+.+++...... .+..++++
T Consensus 143 f~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~-------------~~~~~~Fy 209 (321)
T 1w9c_A 143 FLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQE-------------EAAAQSFY 209 (321)
T ss_dssp HHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHC-------------HHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC-------------hHHHHHHH
Confidence 99999999999999998887889999999999999999999999999999999875421 25678899
Q ss_pred HhccHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHhhhhcccchhh---c--cchhHHHHHHHHHHh
Q 002126 879 SHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKA---I--LSWESLQGWLHSAVS 942 (962)
Q Consensus 879 ~~~G~~Lv~~ll~~~~g~~~rs~~~~~~~iL~~l~~~~~~~~~~~~~~---~--~~~~~~~~Wl~~~l~ 942 (962)
+.+...++..++..+++..+++++...+.+|+.|..+.. ..++..|. . ......++|+.+.|.
T Consensus 210 ~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve-~~~i~~pl~~~~~~~n~~~v~~~l~~lL~ 277 (321)
T 1w9c_A 210 QTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVE-EGKISTSLNPGNPVNNQIFLQEYVANLLK 277 (321)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHH-TTCCCSCSCSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHH-cCccccccCCCCCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999994321 11122210 0 123367788887774
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.71 E-value=3.8e-05 Score=90.95 Aligned_cols=561 Identities=12% Similarity=0.054 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc---ChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCC
Q 002126 5 LQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (962)
Q Consensus 5 ~~~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~---s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l 81 (962)
....+...+..+- ++|+..|..|-+-|..+-. ....|.-....|.... ..+.++|..++..|..-.. .+
T Consensus 8 ~~~~i~~l~~~l~-s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~---d~~~~vr~~~~~~L~~~~~----~~ 79 (588)
T 1b3u_A 8 SLYPIAVLIDELR-NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI---YDEDEVLLALAEQLGTFTT----LV 79 (588)
T ss_dssp SSHHHHHHHHHTT-CSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC---CCCHHHHHHHHHHHTTCSG----GG
T ss_pred CcCcHHHHHHHhh-cccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHh----cc
Confidence 3456777777765 6688889898887876432 2345664444443221 1246899888888862211 12
Q ss_pred ChHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhcc---CCchHHHHHHHhhcccCCCcchHHHHHHHhhcc
Q 002126 82 QSAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (962)
Q Consensus 82 ~~e~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~~~~~~---W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (962)
.... ....++..+.... ..+..|+.+-+.+|..++-..+. |+..++-+.....+ .+.........++..+.
T Consensus 80 ~~~~---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~--~~~~~R~~a~~~l~~~~ 154 (588)
T 1b3u_A 80 GGPE---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG--DWFTSRTSACGLFSVCY 154 (588)
T ss_dssp TSGG---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTC--SSHHHHHHHGGGHHHHT
T ss_pred CcHH---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHH
Confidence 1111 1123344443333 34578999999999998876542 33333333222222 11122233334444433
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhh
Q 002126 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (962)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~ 237 (962)
+-+ +... .+.++..+...+.. ++..++..+.+++..+.... +.+.
T Consensus 155 ~~~----------~~~~-----------~~~l~~~l~~l~~d--------~~~~VR~~a~~~l~~l~~~~-----~~~~- 199 (588)
T 1b3u_A 155 PRV----------SSAV-----------KAELRQYFRNLCSD--------DTPMVRRAAASKLGEFAKVL-----ELDN- 199 (588)
T ss_dssp TTS----------CHHH-----------HHHHHHHHHHHHTC--------SCHHHHHHHHHHHHHHHHTS-----CHHH-
T ss_pred Hhc----------CHHH-----------HHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHh-----cHHh-
Confidence 222 2111 22444444444332 34578999999999988743 2222
Q ss_pred hhcchHHHHHHhcCCCC--cHHHHHHHHHHHHhcCCC--hhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhH
Q 002126 238 AAHPLLNFVFNSLQVQS--SFDVAIEVLVELVGRHEG--LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (962)
Q Consensus 238 ~~~~ll~~~~~~L~~~~--~~~~a~~~l~eil~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e 313 (962)
....+++.+...+.+++ .+..|++++..+.....+ ....++|.+. ....+++.......++.+..+++
T Consensus 200 ~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~--------~~~~d~~~~vR~~a~~~l~~l~~ 271 (588)
T 1b3u_A 200 VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR--------QAAEDKSWRVRYMVADKFTELQK 271 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHH--------HHHTCSSHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------HHccCCCHHHHHHHHHHHHHHHH
Confidence 23568888888887764 456788888776654321 1122333222 12344555555555566655554
Q ss_pred hhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 002126 314 AAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLR 393 (962)
Q Consensus 314 ~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k 393 (962)
....-. ....+++.++.+...+ +.++...+...+..+.+.+. ... ...+++..++..+...
T Consensus 272 ~~~~~~-----~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~---~~~---------~~~~~~~~l~p~l~~~ 332 (588)
T 1b3u_A 272 AVGPEI-----TKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLS---ADC---------RENVIMSQILPCIKEL 332 (588)
T ss_dssp HHCHHH-----HHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSC---TTT---------HHHHHHHTHHHHHHHH
T ss_pred HhCccc-----chhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhC---hhh---------hhhHHHHHHHHHHHHH
Confidence 431110 1124566677776665 56777777777766665431 100 0012223333333322
Q ss_pred hccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHHHHH---HHhhhcCCCCCCCchhhhHHHHHHHhhhhc
Q 002126 394 AQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKV---FFGSWGSANVPIPWKEVETKLFALNVVSEV 470 (962)
Q Consensus 394 ~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l~~~---~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~ 470 (962)
+. | . + ...|......+..++..+|.+.....+ +..+.. ..++.-.++++-+++.+.+.
T Consensus 333 l~---d-----~-----~--~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~----d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 333 VS---D-----A-----N--QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK----DECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp HT---C-----S-----C--HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT----CSCHHHHHHHHTTCHHHHHH
T ss_pred hc---C-----C-----C--HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHHHHh
Confidence 21 1 0 1 256777777777776667754332222 222222 23567777888888877766
Q ss_pred cccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHHH
Q 002126 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACA 548 (962)
Q Consensus 471 i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~--~~~~Aa 548 (962)
+..+.. .+.++..+..+..++..+ +|..+ +..++.++..+... .+.+.+++.++..+.++. ++..|+
T Consensus 394 ~~~~~~---~~~~lp~l~~~~~d~~~~------vr~~~-~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~ 462 (588)
T 1b3u_A 394 IGIRQL---SQSLLPAIVELAEDAKWR------VRLAI-IEYMPLLAGQLGVE-FFDEKLNSLCMAWLVDHVYAIREAAT 462 (588)
T ss_dssp SCHHHH---HHHHHHHHHHHHTCSSHH------HHHHH-HHHHHHHHHHHCGG-GCCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred cCHHHH---HHHHHHHHHHHhcCCCch------HHHHH-HHHHHHHHHHcCHH-HHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 542111 133333333333343322 45544 58888888755432 345678888888888754 899999
Q ss_pred HHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhc
Q 002126 549 SALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID 628 (962)
Q Consensus 549 ~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~ 628 (962)
.++..+++.++... +.+.+......+. ..-+...|...+++++.+...++.+ .++..++.++ .+.+.
T Consensus 463 ~~l~~l~~~~~~~~----~~~~llp~l~~~~-~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l----~~~l~ 529 (588)
T 1b3u_A 463 SNLKKLVEKFGKEW----AHATIIPKVLAMS-GDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTV----LRMAG 529 (588)
T ss_dssp HHHHHHHHHHCHHH----HHHHTHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHH----HHGGG
T ss_pred HHHHHHHHHhCchh----HHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHH----HhhCC
Confidence 99999998876532 2222222221111 1224567788888888887654432 2333444333 33332
Q ss_pred ccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHH
Q 002126 629 GDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACR 708 (962)
Q Consensus 629 ~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~ 708 (962)
.. ++..- ...+..++.+.+.+.. + . .-..+.|.+..+.. ..|.+|.+.+|.
T Consensus 530 d~-------~~~Vr-------~~a~~~l~~l~~~~~~---------~-~--~~~~~~p~l~~l~~---d~d~~vr~~a~~ 580 (588)
T 1b3u_A 530 DP-------VANVR-------FNVAKSLQKIGPILDN---------S-T--LQSEVKPILEKLTQ---DQDVDVKYFAQE 580 (588)
T ss_dssp CS-------CHHHH-------HHHHHHHHHHGGGSCH---------H-H--HHHHHHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CC-------CchHH-------HHHHHHHHHHHHHhch---------h-h--hHHHHHHHHHHHcC---CCchhHHHHHHH
Confidence 21 11111 1234444444443321 1 1 12567888877543 368889999888
Q ss_pred HHHH
Q 002126 709 ALSL 712 (962)
Q Consensus 709 ~~~~ 712 (962)
.+..
T Consensus 581 al~~ 584 (588)
T 1b3u_A 581 ALTV 584 (588)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.66 E-value=0.00014 Score=94.40 Aligned_cols=555 Identities=11% Similarity=0.089 Sum_probs=293.1
Q ss_pred chhhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCC-hhHHHHhhhhhh
Q 002126 208 QLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG-LPQALLCRVPFL 284 (962)
Q Consensus 208 ~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eil~~~~~-~~~~l~~~~~~l 284 (962)
++.+++..+..-+...+..... ..+. -....+++.+++.|.++ +.+.+|+.++..+.....+ ....+++.++
T Consensus 18 ~d~~~R~~A~~~L~~~l~~~~~-~~~~--~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll-- 92 (1230)
T 1u6g_C 18 SDKDFRFMATNDLMTELQKDSI-KLDD--DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLC-- 92 (1230)
T ss_dssp SSHHHHHHHHHHHHHHTSSSCC-SCCT--THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH--
T ss_pred CCHhHHHHHHHHHHHHHccccc-CCCh--hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--
Confidence 3557888888888776654311 1111 12346788888888754 5578899999888865332 2222333332
Q ss_pred HHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhc---ChhHHHHHHHHHhccc-CCCCCchhhhhhHHHHHHHHHH
Q 002126 285 KELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEA---SPEALALADALLSCVA-FPSEDWEIADSTLQFWSTLASY 360 (962)
Q Consensus 285 ~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~---~~~~~~ll~~ll~~~~-~p~~d~~v~~~t~~FW~~l~e~ 360 (962)
..+.+++.......+..+..+++.....-..+ ......++..|+.+.. .+ +..+...+++.|..+.+.
T Consensus 93 ------~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~--~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 93 ------TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE--DVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp ------HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS--CHHHHHHHHHHHHHHHHH
T ss_pred ------HHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHH
Confidence 23344444443344444444444332110000 0123467788887776 34 567888899998887764
Q ss_pred HhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcH---HHH
Q 002126 361 ILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA---TFI 437 (962)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~---~~l 437 (962)
.. ..+.|++.+++..++..+.-| + ...|......+..+....+.+ .++
T Consensus 165 ~~--------------~~l~~~~~~ll~~l~~~L~~~-------------~--~~vR~~a~~al~~l~~~~~~~~~~~~l 215 (1230)
T 1u6g_C 165 QG--------------GLLVNFHPSILTCLLPQLTSP-------------R--LAVRKRTIIALGHLVMSCGNIVFVDLI 215 (1230)
T ss_dssp TC--------------SSCTTTHHHHHHHHGGGGGCS-------------S--HHHHHHHHHHHHHHTTTC----CTTHH
T ss_pred hH--------------hHHHHHHHHHHHHHHHHHcCC-------------c--HHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 21 123345566666666555311 1 256777666676666555542 134
Q ss_pred HHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhH
Q 002126 438 QKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYS 517 (962)
Q Consensus 438 ~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys 517 (962)
..++..+... .++.....++-+++.+++.++..-.. .++.++..+.....++... +|..+ +..++.++
T Consensus 216 ~~l~~~L~~~----~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~------vR~~a-~~~l~~l~ 283 (1230)
T 1u6g_C 216 EHLLSELSKN----DSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDE------LREYC-IQAFESFV 283 (1230)
T ss_dssp HHHHHHHHHT----CSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTT------THHHH-HHHHHHHH
T ss_pred HHHHHHhccC----CchhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHH------HHHHH-HHHHHHHH
Confidence 4455544332 12556667788888888776532111 1456666554443332211 34433 36666555
Q ss_pred HHHHhC-hhchHHHHHHHHHhccc---------------------------------------CchhHHHHHHHHHHHHH
Q 002126 518 KWISAF-QTNARPLLLFLAAGISE---------------------------------------AVSSNACASALRKICED 557 (962)
Q Consensus 518 ~wl~~~-p~~L~~vL~~l~~~l~~---------------------------------------~~~~~~Aa~al~~lc~~ 557 (962)
...... ..|++.+++.++..+.. ..++..|+.++..++..
T Consensus 284 ~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~ 363 (1230)
T 1u6g_C 284 RRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST 363 (1230)
T ss_dssp HCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTT
T ss_pred HHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh
Confidence 532221 23778888888776631 12467788888888762
Q ss_pred hhcccCCCccHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHhccCCchH-------------HHHHHHHHHHHHHHHH
Q 002126 558 ASALIDEPSNLEILMWIGEALEK--RHLPLEDEEEVVGAISLILGSVSNKE-------------LKNNLLARLLSSSYEA 622 (962)
Q Consensus 558 c~~~l~~p~~~~~l~~~~~~l~~--~~l~~~~~~~l~eai~~vi~~lp~~e-------------~~~~~l~~ll~p~~~~ 622 (962)
... ...+.+..+...+.. ..-....|..++++++.++....... .-...+..++..++..
T Consensus 364 ~~~-----~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 438 (1230)
T 1u6g_C 364 RHE-----MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKA 438 (1230)
T ss_dssp CCT-----THHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHH
T ss_pred chh-----HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHH
Confidence 221 123333333333322 12235667788888888876542200 0013344555555555
Q ss_pred HHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhccchHH
Q 002126 623 IGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNL 702 (962)
Q Consensus 623 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v 702 (962)
+.+.+... ++.. . ..+ +..++.+.+.+.... . +.+++++|.+...+.. -..+.++
T Consensus 439 l~~~l~~~-------~~~v---r-~~~---~~~L~~l~~~~~~~l-------~---~~l~~ll~~l~~~L~d-~~~~~~v 493 (1230)
T 1u6g_C 439 LHKQMKEK-------SVKT---R-QCC---FNMLTELVNVLPGAL-------T---QHIPVLVPGIIFSLND-KSSSSNL 493 (1230)
T ss_dssp HHHHTTCS-------CHHH---H-HHH---HHHHHHHHHHSTTTT-------G---GGHHHHHHHHHHHTTC-SSSCHHH
T ss_pred HHHHhccC-------CHHH---H-HHH---HHHHHHHHHHchhhh-------H---HHHHHHHHHHHHHHcC-CCCcchH
Confidence 55544422 1111 0 122 333444443322111 1 2467778888887752 1123478
Q ss_pred HHHHHHHHHHHHHhhhhh-hHhhHHHHHHHHHHhhhhhcC--cchHHHHHHHHHHHhcCC-----CCccchHHHHHHHHh
Q 002126 703 STAACRALSLAIQSSGQH-FVTLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFGHK-----DEYGPLFVTTFERFS 774 (962)
Q Consensus 703 ~e~~c~~~~~~~~~l~~~-~~p~l~~~~~~l~~~f~~~~~--~~~~L~l~~~lv~~~g~~-----~~~~~~l~~l~~~l~ 774 (962)
.+.++..+...+...++. +.|+++.++..+...+....+ ....+..+..++..+|.. ..+.+.+..++..+.
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll 573 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTI 573 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHH
Confidence 889999999888877665 666766666666655532111 022466777788888761 133344444444322
Q ss_pred hhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhh------------------------------------ch
Q 002126 775 QAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAA------------------------------------SG 818 (962)
Q Consensus 775 ~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~------------------------------------~~ 818 (962)
..+.. .+.++++.+..+..++.+..+.+..+... ..
T Consensus 574 -----~~l~~---~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~ 645 (1230)
T 1u6g_C 574 -----KRLKA---ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLR 645 (1230)
T ss_dssp -----HHHSC---SSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCH
T ss_pred -----HHHhc---cCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchH
Confidence 22321 24567777777777777776643221100 01
Q ss_pred hchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhh
Q 002126 819 ALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEEC 854 (962)
Q Consensus 819 ~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~ 854 (962)
+++..++......+..+++....+++..+..++...
T Consensus 646 ~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 646 PVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 223334444444445566777778888888877654
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.62 E-value=8.9e-05 Score=87.73 Aligned_cols=473 Identities=13% Similarity=0.038 Sum_probs=262.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcC-h--HHHH----HHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCC
Q 002126 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQT-D--AAWE----IATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYL 81 (962)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s-~--~aW~----~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l 81 (962)
+..++..+..+.++..|+.|-+.|.++-.. + .-|. +...+..+ .+..+|-.|+.++..-.. .+
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~------~~~~~R~~a~~~l~~~~~----~~ 157 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG------DWFTSRTSACGLFSVCYP----RV 157 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTC------SSHHHHHHHGGGHHHHTT----TS
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHHH----hc
Confidence 444555555567788899998888886543 1 2233 33333332 235788888888876543 24
Q ss_pred ChHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhcc---CCchHHHHHHHhhcccCCCcchHHHHHHHhhcc
Q 002126 82 QSAAKDALLNALLVAAKRFS-SGPPQLLTQICLALSALILRAVE---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP 157 (962)
Q Consensus 82 ~~e~~~~Lr~~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~~~~~~---W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~ 157 (962)
++..+ +.++..+.... ..+..|+...+.+|+.++-.... ++..++.+...++.. +.......+..|..+.
T Consensus 158 ~~~~~----~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 158 SSAVK----AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE--QDSVRLLAVEACVNIA 231 (588)
T ss_dssp CHHHH----HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS--CHHHHTTHHHHHHHHH
T ss_pred CHHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHH
Confidence 54444 44444444333 35678999999999988765441 344555555555431 1111222334443333
Q ss_pred cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhh
Q 002126 158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL 237 (962)
Q Consensus 158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~ 237 (962)
+.+. ... ..+.++.++...+.. ++..++..+.+++....... +.+ .
T Consensus 232 ~~~~----------~~~----------~~~~~~~~l~~~~~d--------~~~~vR~~a~~~l~~l~~~~-----~~~-~ 277 (588)
T 1b3u_A 232 QLLP----------QED----------LEALVMPTLRQAAED--------KSWRVRYMVADKFTELQKAV-----GPE-I 277 (588)
T ss_dssp HHSC----------HHH----------HHHHTHHHHHHHHTC--------SSHHHHHHHHHTHHHHHHHH-----CHH-H
T ss_pred HhCC----------HHH----------HHHHHHHHHHHHccC--------CCHHHHHHHHHHHHHHHHHh-----Ccc-c
Confidence 3221 100 112344444444332 23468889999988877632 112 1
Q ss_pred hhcchHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCC------hhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHH
Q 002126 238 AAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG------LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMS 309 (962)
Q Consensus 238 ~~~~ll~~~~~~L~~~--~~~~~a~~~l~eil~~~~~------~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~ 309 (962)
....+++.+.+.+.++ +.+..|+.++..+.....+ +...++|.+.. .+.+.+.......+..+.
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~--------~l~d~~~~vR~~a~~~l~ 349 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE--------LVSDANQHVKSALASVIM 349 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH--------HHTCSCHHHHHHHHTTGG
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHH
Confidence 2345788888888765 4577888888888775432 12233333321 234445444444444444
Q ss_pred HHhHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHHH
Q 002126 310 EIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDA 389 (962)
Q Consensus 310 ~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 389 (962)
.+++..-... ....++..++.+...+ +.+|...++..+..+.+.+ ..+ . +...++..
T Consensus 350 ~l~~~~~~~~-----~~~~l~p~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~---~~~------~-------~~~~~lp~ 406 (588)
T 1b3u_A 350 GLSPILGKDN-----TIEHLLPLFLAQLKDE--CPEVRLNIISNLDCVNEVI---GIR------Q-------LSQSLLPA 406 (588)
T ss_dssp GGHHHHCHHH-----HHHHTHHHHHHHHTCS--CHHHHHHHHTTCHHHHHHS---CHH------H-------HHHHHHHH
T ss_pred HHHHHhhHhH-----HHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHhc---CHH------H-------HHHHHHHH
Confidence 4433321110 0123455666666654 4567666666665554432 100 0 11223333
Q ss_pred HHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcH----HHHHHHHHhhhcCCCCCCCchhhhHHHHHHH
Q 002126 390 LLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA----TFIQKVFFGSWGSANVPIPWKEVETKLFALN 465 (962)
Q Consensus 390 l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~----~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~ 465 (962)
+..-+ .+ .+| ..|....+.+..+...+|.+ .++..++..+ . ..+|.-.++++-+++
T Consensus 407 l~~~~---~d---~~~---------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~----d~~~~Vr~~a~~~l~ 466 (588)
T 1b3u_A 407 IVELA---ED---AKW---------RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL-V----DHVYAIREAATSNLK 466 (588)
T ss_dssp HHHHH---TC---SSH---------HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG-G----CSSHHHHHHHHHHHH
T ss_pred HHHHh---cC---CCc---------hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh-c----CCcHHHHHHHHHHHH
Confidence 32222 11 012 46777778888887777764 2233333322 2 346888899999999
Q ss_pred hhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccC--ch
Q 002126 466 VVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VS 543 (962)
Q Consensus 466 ~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~--~~ 543 (962)
.+++.+.++. .++.++..+..+..++... +|.++ +.++|.+++.+... .+++.+++.+...+.++ .+
T Consensus 467 ~l~~~~~~~~---~~~~llp~l~~~~~~~~~~------~R~~a-~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~d~~~~V 535 (588)
T 1b3u_A 467 KLVEKFGKEW---AHATIIPKVLAMSGDPNYL------HRMTT-LFCINVLSEVCGQD-ITTKHMLPTVLRMAGDPVANV 535 (588)
T ss_dssp HHHHHHCHHH---HHHHTHHHHHHTTTCSCHH------HHHHH-HHHHHHHHHHHHHH-HHHHHTHHHHHHGGGCSCHHH
T ss_pred HHHHHhCchh---HHHHHHHHHHHHhhCCCHH------HHHHH-HHHHHHHHHhcCHH-HHHHHHHHHHHhhCCCCCchH
Confidence 9988765321 1244444444454444322 46655 58999998876654 37888999999999875 49
Q ss_pred hHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 002126 544 SNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (962)
Q Consensus 544 ~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (962)
+..++.++..++...+... ..+.+......+. ..-+.+.|....++++.+
T Consensus 536 r~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~-~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 536 RFNVAKSLQKIGPILDNST----LQSEVKPILEKLT-QDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHc-CCCchhHHHHHHHHHHHh
Confidence 9999999999987654432 1123333333332 233566777777777654
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.56 E-value=0.11 Score=58.63 Aligned_cols=112 Identities=10% Similarity=0.049 Sum_probs=79.1
Q ss_pred CCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC--hhchH
Q 002126 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF--QTNAR 528 (962)
Q Consensus 451 ~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~--p~~L~ 528 (962)
..+|....++.-++..+++.+.+ . .++.++..+.....++..+ +|.++ +..+|..++-.... ..+++
T Consensus 339 ~~~~~~r~~a~~~L~~l~~~~~~--~--~~~~~~~~l~~~l~~~~~~------~r~aa-l~~l~~l~~~~~~~~~~~~l~ 407 (462)
T 1ibr_B 339 DDDWNPCKAAGVCLMLLATCCED--D--IVPHVLPFIKEHIKNPDWR------YRDAA-VMAFGCILEGPEPSQLKPLVI 407 (462)
T ss_dssp TTCCSHHHHHHHHHHHHHHHTTT--T--HHHHHHHHHHHHTTCSSHH------HHHHH-HHHHHHTSSSSCTTTTCTTTT
T ss_pred cccchHHHHHHHHHHHHHHhccH--H--HHHHHHHHHHHHhcCCChH------HHHHH-HHHHHHHhcCCcHHHHHHHHH
Confidence 35699999999999999998762 2 1577777766655444322 46655 58999988632111 24678
Q ss_pred HHHHHHHHhcccC--chhHHHHHHHHHHHHHhhcccCCCccHHHHHH
Q 002126 529 PLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMW 573 (962)
Q Consensus 529 ~vL~~l~~~l~~~--~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~ 573 (962)
.+++.+++.+.++ .++..|+.++.++|+.+...+..+.+++.++.
T Consensus 408 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~ 454 (462)
T 1ibr_B 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454 (462)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 8999999999864 49999999999999999886532235544433
No 22
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.02 Score=59.04 Aligned_cols=143 Identities=14% Similarity=0.099 Sum_probs=100.2
Q ss_pred CCCchhhhHHHHHHHh-hhhccccCC--CccchhHHHHHHHHhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHH-h-Ch
Q 002126 451 PIPWKEVETKLFALNV-VSEVVLQEG--QAFDFSVIMQLVAVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWIS-A-FQ 524 (962)
Q Consensus 451 ~~~W~~~Ea~Lf~l~~-iae~i~~~~--~~~~l~~i~~~l~~l~-~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~-~-~p 524 (962)
+.+|.+.-+++-.+.. +.+.++.-. . .++..+++.+.... ..++.. ++..+ +..+|.+++-+. . -.
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~-~~~~~~~~~L~~~l~~D~n~~------v~~~A-~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTS-QNYSNLLGIYGHIIQKDANIQ------AVALA-AQSVELICDKLKTPGFS 98 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTT-CCCHHHHHHHHHHHHHCSCHH------HHHHH-HHHHHHHHHHHCTTTSC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCc-ccHHHHHHHHHHHhccCCCHH------HHHHH-HHHHHHHHHhccccccc
Confidence 4689999999999999 876654311 1 12356676555443 454422 45545 699999999886 3 33
Q ss_pred -hchHHHHHHHHHhcccC--chhHHHHHHHHHHHHHhhcccCCCccHHHH-HHHHHHHHhcCCChhhHHHHHHHHHHHhc
Q 002126 525 -TNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEIL-MWIGEALEKRHLPLEDEEEVVGAISLILG 600 (962)
Q Consensus 525 -~~L~~vL~~l~~~l~~~--~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l-~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (962)
.|...+++.++..+.++ .++.+|..|+..+|+.|.+.... .+++.+ ..+...+.+. +...|...+..++.++.
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH
Confidence 68999999999999984 48899999999999998763311 124444 3444544332 56889999999999998
Q ss_pred cCCc
Q 002126 601 SVSN 604 (962)
Q Consensus 601 ~lp~ 604 (962)
..+.
T Consensus 176 ~~~~ 179 (249)
T 2qk1_A 176 EEKD 179 (249)
T ss_dssp HCCS
T ss_pred HcCC
Confidence 7664
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.93 E-value=0.29 Score=57.38 Aligned_cols=461 Identities=13% Similarity=0.079 Sum_probs=219.6
Q ss_pred hcCCCChHHHHHHHHHHHHhhc-ChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 002126 16 LNHDTESCNRVAANQWLVQFQQ-TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALL 94 (962)
Q Consensus 16 ly~~~d~~~~~~A~~~L~~~Q~-s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr~~Ll 94 (962)
+..++|...|+-+.-++..+-+ .++--.++..-|..+= .+.+..+|-.|..+|-.. -.++....+...+.
T Consensus 57 l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL--~~~n~~ir~~AL~~L~~i-------~~~~~~~~l~~~l~ 127 (591)
T 2vgl_B 57 CMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDC--EDPNPLIRALAVRTMGCI-------RVDKITEYLCEPLR 127 (591)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGS--SSSSHHHHHHHHHHHHTC-------CSGGGHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHcC-------ChHHHHHHHHHHHH
Confidence 4456677788888777777655 3544333333322211 123567787776666422 14444555544444
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhc-cCC--chHHHHHHHhhcccCCCcchHHHHHHHhhcccccccccccccCCC
Q 002126 95 VAAKRFSSGPPQLLTQICLALSALILRAV-EHG--KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNIS 171 (962)
Q Consensus 95 ~~l~~~~~~~~~v~~kL~~aLa~l~~~~~-~W~--~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~l~ 171 (962)
..+. ..++.|+.+-+.++..++...+ .++ .+++.+...+.. .++......+..|..+.++-.+..... +
T Consensus 128 ~~L~---d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d--~d~~V~~~A~~aL~~i~~~~~~~~~~~--l- 199 (591)
T 2vgl_B 128 KCLK---DEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIAD--SNPMVVANAVAALSEISESHPNSNLLD--L- 199 (591)
T ss_dssp HHSS---CSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC--SCHHHHHHHHHHHHHHTTSCCSCCSCC--C-
T ss_pred HHcC---CCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCC--CChhHHHHHHHHHHHHHhhCCCccchh--c-
Confidence 4432 4568999999999999887554 243 355566666653 123333444555555544321100000 1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcC
Q 002126 172 SAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQ 251 (962)
Q Consensus 172 ~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~ 251 (962)
.+..+..|.+.+... ++-.+..+++++..+ + |.+.-....+++.+...|.
T Consensus 200 --------------~~~~~~~Ll~~l~~~--------~~~~q~~il~~l~~l---~-----~~~~~~~~~~l~~l~~~l~ 249 (591)
T 2vgl_B 200 --------------NPQNINKLLTALNEC--------TEWGQIFILDCLSNY---N-----PKDDREAQSICERVTPRLS 249 (591)
T ss_dssp --------------HHHHHHHHHHHHHHC--------CHHHHHHHHHHHHTS---C-----CCSHHHHHHHHHHHTTCSC
T ss_pred --------------cHHHHHHHHHcCCCC--------CchHHHHHHHHHHHh---C-----CCChHHHHHHHHHHHHHHc
Confidence 111122122212211 123445556655322 1 1111113457777777776
Q ss_pred CC--CcHHHHHHHHHHHHhc---CCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhcChhH
Q 002126 252 VQ--SSFDVAIEVLVELVGR---HEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEA 326 (962)
Q Consensus 252 ~~--~~~~~a~~~l~eil~~---~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~ 326 (962)
+. ...-.|+.++..+... ..+..+.+..++.. .+. .+.+.|.+.-....+.+..++..+...+..
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~---~L~--~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~----- 319 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAP---PLV--TLLSGEPEVQYVALRNINLIVQKRPEILKQ----- 319 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHH---HHH--HHTTSCHHHHHHHHHHHHHHHHHCCSTTTT-----
T ss_pred CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH---HHH--HHhcCCccHHHHHHHHHHHHHHhChHHHHH-----
Confidence 43 4455677777665431 22333433333322 111 112344443222233334443333222211
Q ss_pred HHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 002126 327 LALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM 406 (962)
Q Consensus 327 ~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~ 406 (962)
.+..+ .|.... +..|...+++.|+.+.+. + + .. .++..+...+. + .
T Consensus 320 --~~~~~-~~~~~d--~~~Ir~~al~~L~~l~~~----~--------n----v~----~iv~~L~~~l~---~-----~- 365 (591)
T 2vgl_B 320 --EIKVF-FVKYND--PIYVKLEKLDIMIRLASQ----A--------N----IA----QVLAELKEYAT---E-----V- 365 (591)
T ss_dssp --CTTTT-SCCTTS--CHHHHHHHHHHHHHTCCS----S--------T----HH----HHHHHHHHHTT---S-----S-
T ss_pred --HHHhh-eeccCC--hHHHHHHHHHHHHHHCCh----h--------h----HH----HHHHHHHHHHh---c-----C-
Confidence 11111 122221 345667788777664321 0 1 11 23333332221 1 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHH
Q 002126 407 VDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIM 484 (962)
Q Consensus 407 ~d~~d~f~~fR~~~~d~l~~~~~il~~--~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~ 484 (962)
| .+||+.+...+..++.-..+ +.++..+++.+.. ..+|-.-|+ +.+++.+....+..-. ..+.
T Consensus 366 ----d--~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~----~~~~v~~e~-i~~l~~ii~~~p~~~~----~~v~ 430 (591)
T 2vgl_B 366 ----D--VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT----KVNYVVQEA-IVVIRDIFRKYPNKYE----SIIA 430 (591)
T ss_dssp ----C--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----CCHHHHHHH-HHHHHHHHHHSCSSCC----TTHH
T ss_pred ----C--HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcc----cchHHHHHH-HHHHHHHHHHCcchHH----HHHH
Confidence 1 25787777666666543322 2355555444422 234666666 5567666555443111 1223
Q ss_pred HHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhccc
Q 002126 485 QLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALI 562 (962)
Q Consensus 485 ~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l 562 (962)
.++..+.....+. ++..+ ++++|+|++++...+ .++..+...+.. +.++..+..|+.++...+...
T Consensus 431 ~L~~~l~~~~~~~------~~~~~-~wilGey~~~~~~~~----~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~- 498 (591)
T 2vgl_B 431 TLCENLDSLDEPD------ARAAM-IWIVGEYAERIDNAD----ELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE- 498 (591)
T ss_dssp HHHHTTTTCCSHH------HHHHH-HHHHHTTCTTCTTHH----HHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-
T ss_pred HHHHHHHhccCHH------HHHHH-HHHHHcccccccCHH----HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-
Confidence 3333343222211 34444 699999999876533 455566655543 458888889999988754321
Q ss_pred CCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 002126 563 DEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (962)
Q Consensus 563 ~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (962)
..+.+..+.........+.+.|.+.++..+.+
T Consensus 499 ----~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 499 ----TQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp ----THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 12444444443332334567777766655443
No 24
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.45 E-value=0.076 Score=54.31 Aligned_cols=155 Identities=15% Similarity=0.067 Sum_probs=100.3
Q ss_pred CCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhc-cCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-hhchH
Q 002126 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLS-ASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNAR 528 (962)
Q Consensus 451 ~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~-~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~-p~~L~ 528 (962)
+.+|....+++.++..+.+..+.-.. ..+..++..+..+. ..+... ++..+ +..+|.++.-+... ..|++
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~-~~~~~i~~~L~~~l~kd~~~~------V~~~a-~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLEN-GEYGALVSALKKVITKDSNVV------LVAMA-GKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCC-CCCHHHHHHHHHHHHHCSCHH------HHHHH-HHHHHHHHHHHGGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCC-CCHHHHHHHHHHHhccCCCHH------HHHHH-HHHHHHHHHHHhhhHHHHHH
Confidence 46899999999999999876543111 12466776665544 244322 45545 58999998766432 24888
Q ss_pred HHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchH
Q 002126 529 PLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKE 606 (962)
Q Consensus 529 ~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e 606 (962)
.+++.++..+.++. ++.+|+.++..++..+. ....+-.+...+.. -+...|..++..++.++....++.
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSN--KNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999865 89999999999987532 11222222333322 257789999999999988764432
Q ss_pred HHHHHHHHHHHHHHHH
Q 002126 607 LKNNLLARLLSSSYEA 622 (962)
Q Consensus 607 ~~~~~l~~ll~p~~~~ 622 (962)
....++..++..+...
T Consensus 169 ~~~~~l~~l~p~l~~~ 184 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKT 184 (242)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 1235555555444433
No 25
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.05 E-value=0.67 Score=57.98 Aligned_cols=281 Identities=9% Similarity=0.036 Sum_probs=143.5
Q ss_pred hhchHHHHHHHHHhccc-----C--chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q 002126 524 QTNARPLLLFLAAGISE-----A--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAIS 596 (962)
Q Consensus 524 p~~L~~vL~~l~~~l~~-----~--~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~ 596 (962)
.+.++.+++++-..+.. + ....+|..++..+++.|..... ..++.+..+...+......+..|...+..+|
T Consensus 454 ~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~--~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~ 531 (971)
T 2x1g_F 454 DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK--RQIPRLMRVLAEIPYEKLNVKLLGTALETMG 531 (971)
T ss_dssp THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh--HHHHHHHHHHHhcCccccCHHHHHHHHHHHH
Confidence 45677777777666643 2 3678899999999998886542 2666666554443321224556677777777
Q ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCch
Q 002126 597 LILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDP 676 (962)
Q Consensus 597 ~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p 676 (962)
.....+... .+++..++..++..+ + +. .+ . .++..+.++. +... ..
T Consensus 532 ~~~~~l~~~---~~~l~~vl~~l~~~l----~--~~--v~----~------~A~~al~~l~---~~~~----------~~ 577 (971)
T 2x1g_F 532 SYCNWLMEN---PAYIPPAINLLVRGL----N--SS--MS----A------QATLGLKELC---RDCQ----------LQ 577 (971)
T ss_dssp HTHHHHC-------CHHHHHHHHHHHH----H--SS--CH----H------HHHHHHHHHH---HHCH----------HH
T ss_pred HHHHHHhcC---HHHHHHHHHHHHHHh----C--hH--HH----H------HHHHHHHHHH---HHHH----------Hh
Confidence 766554421 234555554444443 1 11 11 0 2334444443 2211 22
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh-hhhHhhH----HHHHHHHHHhhhhhc-------Ccch
Q 002126 677 IFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-QHFVTLL----PQVLDCLSTNFVSFQ-------NHEC 744 (962)
Q Consensus 677 ~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~-~~~~p~l----~~~~~~l~~~f~~~~-------~~~~ 744 (962)
..+++..++..+..++. .-.-+....+.+..++..++...+ ....+++ +++++.+.+...... ....
T Consensus 578 l~p~~~~ll~~l~~~l~-~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~ 656 (971)
T 2x1g_F 578 LKPYADPLLNACHASLN-TGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIF 656 (971)
T ss_dssp HHHHHHHHHHHHHHHHH-STTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 44566777777777775 322345667777777777776553 3344444 444443332211100 0122
Q ss_pred HHHHHHHHHHHhcCCC--Cc-----cchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhhHHHHhhc
Q 002126 745 YIRTASVVIEEFGHKD--EY-----GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAAS 817 (962)
Q Consensus 745 ~L~l~~~lv~~~g~~~--~~-----~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~l~~~ 817 (962)
++.+++.++...+..- .. ...+...+..+.+.. ...+.. ..++++++++.++++.++++.....+.
T Consensus 657 ~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~l~~---~~~~~~v~e~~~~~~~~~~~~~~~~~~--- 729 (971)
T 2x1g_F 657 RLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIF-KRIAEM---WVEEIDVLEAACSAMKHAITNLRSSFQ--- 729 (971)
T ss_dssp HHHHHHHHHHHHTC-------------CCHHHHHTTHHHH-HHHHHH---TTTCHHHHHHHHHHHHHHHHHHHC--C---
T ss_pred HHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHH-HHHHHh---ccccHHHHHHHHHHHHHHHHhhhhhcc---
Confidence 4566677777665420 00 112222222222211 111211 235678999999999998887655542
Q ss_pred hhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHh
Q 002126 818 GALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLE 852 (962)
Q Consensus 818 ~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~ 852 (962)
++++.+++..+.++...+ . ..++.+...++.
T Consensus 730 -p~l~~~~~~l~~~~~~~~-~--~~~l~l~~~~i~ 760 (971)
T 2x1g_F 730 -PMLQDLCLFIVASFQTRC-C--APTLEISKTAIV 760 (971)
T ss_dssp -THHHHHHHHHHHHCC--C-C--HHHHHHHHHHHT
T ss_pred -ccHHHHHHHHHHHHhcCC-c--hHHHHHHHHHHH
Confidence 467778888777776532 2 235566666654
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.05 E-value=0.24 Score=55.68 Aligned_cols=335 Identities=12% Similarity=0.021 Sum_probs=165.5
Q ss_pred hhhhHHHHHHHHHHHHHhcccccccchhhhhc-chHHHHHHhcCCC---CcHHHHHHHHHHHHhcCCChhHHHH-hhhhh
Q 002126 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAH-PLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALL-CRVPF 283 (962)
Q Consensus 209 ~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~-~ll~~~~~~L~~~---~~~~~a~~~l~eil~~~~~~~~~l~-~~~~~ 283 (962)
+..++..++.++..-+.... .-+...+... .+++.+.+.|.++ +....|+.++..+.....+..+.+. ...+
T Consensus 33 ~~~~r~~A~~~L~~l~~~~~--~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i- 109 (450)
T 2jdq_A 33 SPEQQLSATQKFRKLLSKEP--NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAV- 109 (450)
T ss_dssp CHHHHHHHHHHHHHHHHSSS--SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH-
T ss_pred CHHHHHHHHHHHHHHhcCCC--CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH-
Confidence 35688899999988765221 1122233344 7899999999765 4567888999888764432222222 1111
Q ss_pred hHHhhhhhhhccCcHhHHhhHHHHHHHHhHhh---hHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHH
Q 002126 284 LKELLLLPALTDGDEKVIGGLACLMSEIGQAA---PSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASY 360 (962)
Q Consensus 284 l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~---~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~ 360 (962)
+.+. ..+.+++.+....-+..+..++... ...+.+. ..++.++.+..... +.++...+...+..+...
T Consensus 110 --~~L~-~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 110 --PIFI-ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC-----NILPPLLQLFSKQN-RLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp --HHHH-HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHHTTSCC-CHHHHHHHHHHHHHHHCC
T ss_pred --HHHH-HHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHC-----CCHHHHHHHhcCCC-CHHHHHHHHHHHHHHhCC
Confidence 1121 2344566666666666666665532 2222221 23455566655421 456777777666555532
Q ss_pred HhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcH------
Q 002126 361 ILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSA------ 434 (962)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~------ 434 (962)
- +.. ...... ..++..++.-+.- . + .+.|......+.+++..-...
T Consensus 181 ~---~~~------~~~~~~----~~~l~~L~~~l~~--------~-----~--~~v~~~a~~~L~~l~~~~~~~~~~~~~ 232 (450)
T 2jdq_A 181 K---SPP------PEFAKV----SPCLNVLSWLLFV--------S-----D--TDVLADACWALSYLSDGPNDKIQAVID 232 (450)
T ss_dssp S---SSC------CCGGGT----GGGHHHHHHHTTC--------C-----C--HHHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred C---CCC------CCHHHH----HHHHHHHHHHHcc--------C-----C--HHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 1 000 000111 2233333333321 1 1 134555555665554311000
Q ss_pred -HHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHH
Q 002126 435 -TFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVI 513 (962)
Q Consensus 435 -~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~i 513 (962)
..+..++..+ .+.+|.-.+.++.+++.++...+.......-..++..+..+..++... ++..+ +.++
T Consensus 233 ~~~i~~L~~ll-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~------vr~~a-~~~L 300 (450)
T 2jdq_A 233 AGVCRRLVELL-----MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKES------IKKEA-CWTI 300 (450)
T ss_dssp TTTHHHHHHHT-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHH------HHHHH-HHHH
T ss_pred cCcHHHHHHHH-----CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHH------HHHHH-HHHH
Confidence 0122222222 245799999999999998765331000000012333333333344322 45544 4788
Q ss_pred HhhHHHHHhChh-ch-HHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhc-c---cCCCccHHHHHHHHHHHHhcCCCh
Q 002126 514 GSYSKWISAFQT-NA-RPLLLFLAAGISE--AVSSNACASALRKICEDASA-L---IDEPSNLEILMWIGEALEKRHLPL 585 (962)
Q Consensus 514 g~ys~wl~~~p~-~L-~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~-~---l~~p~~~~~l~~~~~~l~~~~l~~ 585 (962)
+..+..-..+-+ .+ ..+++.++..+.+ +.++..|+.++.++|..+.. . +.....++.|..+ +.. -+.
T Consensus 301 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~l---l~~--~~~ 375 (450)
T 2jdq_A 301 SNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL---LTV--MDS 375 (450)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHG---GGS--SCH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH---hcC--CCH
Confidence 887642111111 11 1345555555554 55999999999999976321 1 1000122222222 111 145
Q ss_pred hhHHHHHHHHHHHhc
Q 002126 586 EDEEEVVGAISLILG 600 (962)
Q Consensus 586 ~~~~~l~eai~~vi~ 600 (962)
+.+...+++++.++.
T Consensus 376 ~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 376 KIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777777764
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.37 E-value=0.58 Score=53.97 Aligned_cols=330 Identities=10% Similarity=-0.018 Sum_probs=165.2
Q ss_pred hhhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC---CcHHHHHHHHHHHHhcCCChhHHHH-hhhhhh
Q 002126 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALL-CRVPFL 284 (962)
Q Consensus 209 ~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~---~~~~~a~~~l~eil~~~~~~~~~l~-~~~~~l 284 (962)
+..++..++.++..-+.... .-+...+.....++.+++.|.++ ++...|+.+|..+.....+....+. ...+.
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~--~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~- 176 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREH--RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVP- 176 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSS--SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH-
T ss_pred CHHHHHHHHHHHHHHhCCCC--CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHH-
Confidence 34677788888887765321 11223345678899999999865 4567899999888775433323222 11111
Q ss_pred HHhhhhhhhccCcHhHHhhHHHHHHHHhHh---hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHH
Q 002126 285 KELLLLPALTDGDEKVIGGLACLMSEIGQA---APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYI 361 (962)
Q Consensus 285 ~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~---~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l 361 (962)
.+. ..+.+.+.+.....+..+..++.. +...+... ..++.|+.+...+ +.++...++.....|+..-
T Consensus 177 --~Lv-~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-----~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 177 --LFI-QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-----NAMEPILGLFNSN--KPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp --HHH-HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-----TCHHHHHHGGGSC--CHHHHHHHHHHHHHHHCCS
T ss_pred --HHH-HHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHc-----CcHHHHHHHhccC--CHHHHHHHHHHHHHHhCCC
Confidence 111 133445666666666667666543 22222221 2355566666554 5566666665555544320
Q ss_pred hhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHHHH----
Q 002126 362 LGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFI---- 437 (962)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~~l---- 437 (962)
+. . .-......++..++.-+.- . + .+.|.....++.+++. +.+...
T Consensus 247 ---~~-------~---~~~~~~~~~l~~L~~lL~~--------~-----d--~~v~~~a~~~L~~L~~--~~~~~~~~~~ 296 (530)
T 1wa5_B 247 ---KP-------Q---PDWSVVSQALPTLAKLIYS--------M-----D--TETLVDACWAISYLSD--GPQEAIQAVI 296 (530)
T ss_dssp ---SS-------C---CCHHHHGGGHHHHHHHTTC--------C-----C--HHHHHHHHHHHHHHHS--SCHHHHHHHH
T ss_pred ---CC-------C---CcHHHHHhHHHHHHHHHcC--------C-----C--HHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 00 0 0011223344444443321 1 1 2455555556655542 111111
Q ss_pred -----HHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHH
Q 002126 438 -----QKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADV 512 (962)
Q Consensus 438 -----~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ 512 (962)
..++..+ ...+|.-.+.++.+++.++...+.......-..++..+..+..++... ++..+ +.+
T Consensus 297 ~~~~v~~Lv~lL-----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~------vr~~A-~~a 364 (530)
T 1wa5_B 297 DVRIPKRLVELL-----SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN------IKKEA-CWT 364 (530)
T ss_dssp HTTCHHHHHHGG-----GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH------HHHHH-HHH
T ss_pred hcCcHHHHHHHH-----CCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHH------HHHHH-HHH
Confidence 2222222 135688999999999988754321000000011233333333343222 45544 478
Q ss_pred HHhhHHHHHhChhch-----HHHHHHHHHhcc--cCchhHHHHHHHHHHHHHhhc------ccCCCccHHHHHHHHHHHH
Q 002126 513 IGSYSKWISAFQTNA-----RPLLLFLAAGIS--EAVSSNACASALRKICEDASA------LIDEPSNLEILMWIGEALE 579 (962)
Q Consensus 513 ig~ys~wl~~~p~~L-----~~vL~~l~~~l~--~~~~~~~Aa~al~~lc~~c~~------~l~~p~~~~~l~~~~~~l~ 579 (962)
|+.++.. +++.. ..+++.|+..+. ++.++..|+.++.++|..+.. .+.....++.|..+. .
T Consensus 365 L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll---~ 438 (530)
T 1wa5_B 365 ISNITAG---NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL---E 438 (530)
T ss_dssp HHHHTTS---CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT---T
T ss_pred HHHHHcC---CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHH---h
Confidence 8877642 22211 123444444444 356899999999999987542 110001222222221 1
Q ss_pred hcCCChhhHHHHHHHHHHHhcc
Q 002126 580 KRHLPLEDEEEVVGAISLILGS 601 (962)
Q Consensus 580 ~~~l~~~~~~~l~eai~~vi~~ 601 (962)
. -+...+...+.+++.++..
T Consensus 439 ~--~~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 439 I--ADNRIIEVTLDALENILKM 458 (530)
T ss_dssp T--CCHHHHHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHHHHHh
Confidence 1 2456677777777777644
No 28
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.94 E-value=7.4 Score=48.36 Aligned_cols=304 Identities=11% Similarity=0.030 Sum_probs=151.8
Q ss_pred HHHHHhhHHHHHh--ChhchHHHHHHHHHhccc-----Cc--hhHHHHHHHHHHHHHhhcccCCCccHHHHH-HHHHHHH
Q 002126 510 ADVIGSYSKWISA--FQTNARPLLLFLAAGISE-----AV--SSNACASALRKICEDASALIDEPSNLEILM-WIGEALE 579 (962)
Q Consensus 510 ~~~ig~ys~wl~~--~p~~L~~vL~~l~~~l~~-----~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~-~~~~~l~ 579 (962)
+..+|+-++=... ...+++.++++|+.-..+ +. ++..++..+.++|+=.+.+ |.+++.++ .+.+.+.
T Consensus 474 ~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~---~~~L~~vl~~L~~~l~ 550 (1023)
T 4hat_C 474 SWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH---WNFLRTVILKLFEFMH 550 (1023)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC---HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhh
Confidence 5888987763322 345889999998876652 22 5667778888888776542 33443333 2333321
Q ss_pred hcCCChhhHHHHHHHHHHHhccCCchHHHHHHH--------HHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHH
Q 002126 580 KRHLPLEDEEEVVGAISLILGSVSNKELKNNLL--------ARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATR 651 (962)
Q Consensus 580 ~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l--------~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 651 (962)
. -.+..+.....++..+.+.-. ..+ ..++.++++.+.++.... .+. ....
T Consensus 551 ~--~~~~v~~~A~~al~~l~~~c~------~~l~~~~~~e~~p~~~~il~~l~~~~~~l-------~~~-------~~~~ 608 (1023)
T 4hat_C 551 E--THEGVQDMACDTFIKIVQKCK------YHFVIQQPRESEPFIQTIIRDIQKTTADL-------QPQ-------QVHT 608 (1023)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHHT------HHHHSCCTTCSSCHHHHHHHTHHHHHTTS-------CHH-------HHHH
T ss_pred c--CCHHHHHHHHHHHHHHHHHHH------HHhhccCCCCCchhHHHHHHHHHHHHHhC-------CHH-------HHHH
Confidence 1 112334445555555543211 111 124445555555555421 111 1234
Q ss_pred HHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh---hhc------cchHHHHH---HHHHHHHHHHhhhh
Q 002126 652 GLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS---EHM------ENGNLSTA---ACRALSLAIQSSGQ 719 (962)
Q Consensus 652 ~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~---~~~------~~~~v~e~---~c~~~~~~~~~l~~ 719 (962)
..+.++.+.+.+... ......++.+++.+...... .+. .|++.+.. +++++......+|.
T Consensus 609 lyeai~~vi~~~~~~--------~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~ 680 (1023)
T 4hat_C 609 FYKACGIIISEERSV--------AERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA 680 (1023)
T ss_dssp HHHHHHHHHTTCCSH--------HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCH--------hhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcH
Confidence 566677777654321 11223344444333332221 111 23333444 44455556677888
Q ss_pred hhHhhHHHHHHHHHHhhhhhcCc---------------ch----------HHHHHHHHHHHhcCCCC-ccchHHHHHHHH
Q 002126 720 HFVTLLPQVLDCLSTNFVSFQNH---------------EC----------YIRTASVVIEEFGHKDE-YGPLFVTTFERF 773 (962)
Q Consensus 720 ~~~p~l~~~~~~l~~~f~~~~~~---------------~~----------~L~l~~~lv~~~g~~~~-~~~~l~~l~~~l 773 (962)
.+.|.+.++...+...|+..... +. .|.++...|....+.+. ....+..++..+
T Consensus 681 ~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~v 760 (1023)
T 4hat_C 681 DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAV 760 (1023)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHH
Confidence 88888888877777666533110 00 11122222221111000 001122222222
Q ss_pred hhhHHHHHhhcCCCCCCCCchH-HHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhc---cCchhHHHHHHHHHHH
Q 002126 774 SQAASVRALNSSYICDQEPDLV-EAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT---AMHRGAALAAMSYLSC 849 (962)
Q Consensus 774 ~~~~~~~~l~~~~~~~~~pD~~-~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~---~~e~~~~~a~~~fl~~ 849 (962)
..-+ . ...|+.. -+++.+++.++++....+.+.-+..++.+|.+++.=++ ..+|+....-.+++..
T Consensus 761 l~dY-----~-----~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~ 830 (1023)
T 4hat_C 761 LEDY-----M-----NNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKV 830 (1023)
T ss_dssp HHHH-----H-----HSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHH
T ss_pred HHHH-----H-----hCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHH
Confidence 2221 1 1233332 34667777777776554333212567788888887665 3578888888999998
Q ss_pred HHhhhhh
Q 002126 850 FLEECLA 856 (962)
Q Consensus 850 li~~~~~ 856 (962)
++..+..
T Consensus 831 ~~~~~f~ 837 (1023)
T 4hat_C 831 INEKSFA 837 (1023)
T ss_dssp HHHHCTH
T ss_pred HHHHChH
Confidence 8876543
No 29
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.60 E-value=13 Score=46.24 Aligned_cols=265 Identities=11% Similarity=0.132 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHhccC-----CchH-----HHHHH
Q 002126 543 SSNACASALRKICEDASALIDEPSNLEILMWIGEALEK-RHLPLEDEEEVVGAISLILGSV-----SNKE-----LKNNL 611 (962)
Q Consensus 543 ~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~-~~l~~~~~~~l~eai~~vi~~l-----p~~e-----~~~~~ 611 (962)
.+.+|...+..+|...++.+. +..++.+.+....... +.-+-..+...+-++|.+.... +... .....
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~ 455 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred cHHHHHHHHHHHHHHcchhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH
Confidence 678888889999988775442 2233444333332111 1123356777788888886532 1110 12222
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 002126 612 LARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKL 691 (962)
Q Consensus 612 l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i 691 (962)
+...+-|. + .... ..++... .+++..+.+++.. + +| ..++.+++.+...
T Consensus 456 l~~~v~p~---l----~~~~----~~~p~vr----~~a~~~lg~~~~~---~-----------~~--~~l~~~l~~l~~~ 504 (960)
T 1wa5_C 456 FTKEIAPD---L----TSNN----IPHIILR----VDAIKYIYTFRNQ---L-----------TK--AQLIELMPILATF 504 (960)
T ss_dssp HHHHTHHH---H----HCSS----CSCHHHH----HHHHHHHHHTGGG---S-----------CH--HHHHHHHHHHHHH
T ss_pred HHHHhHHH---h----cCCC----CCCceeh----HHHHHHHHHHHhh---C-----------CH--HHHHHHHHHHHHH
Confidence 22222222 2 1110 0012111 1233333333321 1 11 2455556655544
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHhh-----------hhhhHhhHHHHHHHHHHhhhhhc-------CcchHHHHHHHHH
Q 002126 692 FRSEHMENGNLSTAACRALSLAIQSS-----------GQHFVTLLPQVLDCLSTNFVSFQ-------NHECYIRTASVVI 753 (962)
Q Consensus 692 ~~~~~~~~~~v~e~~c~~~~~~~~~l-----------~~~~~p~l~~~~~~l~~~f~~~~-------~~~~~L~l~~~lv 753 (962)
+. ..+..|..++|..+++.+... ...+.|+++++++.+...+.... .....+..+..++
T Consensus 505 L~---d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv 581 (960)
T 1wa5_C 505 LQ---TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVL 581 (960)
T ss_dssp TT---CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHH
T ss_pred hC---CCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHH
Confidence 42 235778899999999877632 34578999999998887665420 1233567888888
Q ss_pred HHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHh-hhHHHHhhchhchHHHHHHHHHhh
Q 002126 754 EEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRT-SRKEVLAASGALLEVSFQKAAICC 832 (962)
Q Consensus 754 ~~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~-~p~~~l~~~~~~l~~~l~~~l~~l 832 (962)
..+++ ++.+.+..++..+.... ..... -.++|+.....|+.++.+++. .|..+.. +.+.+++.....+
T Consensus 582 ~~~~~--~~~p~~~~l~~~L~~~l--~~~~~---~~~~~~~~~~~~e~l~~l~~~~~~~~~~~----~~~~~~p~~~~iL 650 (960)
T 1wa5_C 582 QTSED--SIQPLFPQLLAQFIEIV--TIMAK---NPSNPRFTHYTFESIGAILNYTQRQNLPL----LVDSMMPTFLTVF 650 (960)
T ss_dssp HHHTT--TTGGGHHHHHHHHHHHH--HHHTT---SCCCHHHHHHHHHHHHHHHHTSCGGGHHH----HHHHHHHHHHHHH
T ss_pred HHHHH--hhhhHHHHHHHHHHHHH--HHHHh---CCCCcHHHHHHHHHHHHHHhcCCcchHHH----HHHHHHHHHHHHH
Confidence 88875 45565655555544432 22211 145788888889999988887 4443332 2233334333334
Q ss_pred ccCchhHHHHHHHHHHHHHhh
Q 002126 833 TAMHRGAALAAMSYLSCFLEE 853 (962)
Q Consensus 833 ~~~e~~~~~a~~~fl~~li~~ 853 (962)
.....+....+++++..++..
T Consensus 651 ~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHHHh
Confidence 333333444566666555543
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.43 E-value=9.7 Score=44.23 Aligned_cols=414 Identities=11% Similarity=0.048 Sum_probs=196.7
Q ss_pred cCCCChHHHHHHHHHHHHhhcChHHHHH----HHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHHHHHH
Q 002126 17 NHDTESCNRVAANQWLVQFQQTDAAWEI----ATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNA 92 (962)
Q Consensus 17 y~~~d~~~~~~A~~~L~~~Q~s~~aW~~----~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr~~ 92 (962)
..++|+..|..|-..|..+. +++.+.. ...+|.++ +..||.-|+..+..-...+-+.++. ..
T Consensus 95 L~~~n~~ir~~AL~~L~~i~-~~~~~~~l~~~l~~~L~d~------~~~VRk~A~~al~~i~~~~p~~~~~-------~~ 160 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGCIR-VDKITEYLCEPLRKCLKDE------DPYVRKTAAVCVAKLHDINAQMVED-------QG 160 (591)
T ss_dssp SSSSSHHHHHHHHHHHHTCC-SGGGHHHHHHHHHHHSSCS------CHHHHHHHHHHHHHHHHSSCCCHHH-------HH
T ss_pred cCCCCHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHcCCC------ChHHHHHHHHHHHHHHhhChhhccc-------cc
Confidence 45788889999988888875 6777766 55666532 4799999999998776643222211 12
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhc-c-CC----chHHHHHHHhhcccCCCcchHHHHHHHhhcccccccccc
Q 002126 93 LLVAAKRFS-SGPPQLLTQICLALSALILRAV-E-HG----KPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQA 165 (962)
Q Consensus 93 Ll~~l~~~~-~~~~~v~~kL~~aLa~l~~~~~-~-W~----~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~ 165 (962)
++..+...- ..++.|+..-..+|..+.-..+ . +- ..+..++..+... ++.....+++++..+..+
T Consensus 161 ~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~--~~~~q~~il~~l~~l~~~------ 232 (591)
T 2vgl_B 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC--TEWGQIFILDCLSNYNPK------ 232 (591)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHTSCCC------
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC--CchHHHHHHHHHHHhCCC------
Confidence 334443332 3456787777777777665433 1 22 2355566655431 222233445555443311
Q ss_pred cccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhh--hcchH
Q 002126 166 SDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA--AHPLL 243 (962)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~--~~~ll 243 (962)
... ....+++.+...+.+ .+..+..++.+|+........ -+.+.+. ...+.
T Consensus 233 -----~~~-----------~~~~~l~~l~~~l~~--------~~~~V~~ea~~~i~~l~~~~~---~~~~~~~~~~~~~~ 285 (591)
T 2vgl_B 233 -----DDR-----------EAQSICERVTPRLSH--------ANSAVVLSAVKVLMKFLELLP---KDSDYYNMLLKKLA 285 (591)
T ss_dssp -----SHH-----------HHHHHHHHHTTCSCS--------STTHHHHHHHHHHHHSCCSCC---BTTBSHHHHHHHTH
T ss_pred -----ChH-----------HHHHHHHHHHHHHcC--------CChHHHHHHHHHHHHHhhccC---CCHHHHHHHHHHHH
Confidence 111 122344444433332 234566666666554432100 0111111 12233
Q ss_pred HHHHHhc-CCCCcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhc
Q 002126 244 NFVFNSL-QVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEA 322 (962)
Q Consensus 244 ~~~~~~L-~~~~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~ 322 (962)
+.+...+ .++++.-.|++.+..+....++..+. .+. .+. ...+++....+.-+.++..++ +
T Consensus 286 ~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~---~~~----~~~--~~~~d~~~Ir~~al~~L~~l~---------~ 347 (591)
T 2vgl_B 286 PPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQ---EIK----VFF--VKYNDPIYVKLEKLDIMIRLA---------S 347 (591)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTT---CTT----TTS--CCTTSCHHHHHHHHHHHHHTC---------C
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHH---HHH----hhe--eccCChHHHHHHHHHHHHHHC---------C
Confidence 3333333 34566778888888888765432211 110 111 112333332222223332221 1
Q ss_pred ChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCC
Q 002126 323 SPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFN 402 (962)
Q Consensus 323 ~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~ 402 (962)
......++.-|+.+.... |.++...+..-...++ ..|.+.....++.++.-+.-+
T Consensus 348 ~~nv~~iv~~L~~~l~~~--d~~~r~~~v~aI~~la------------------~~~~~~~~~~v~~Ll~ll~~~----- 402 (591)
T 2vgl_B 348 QANIAQVLAELKEYATEV--DVDFVRKAVRAIGRCA------------------IKVEQSAERCVSTLLDLIQTK----- 402 (591)
T ss_dssp SSTHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHHTC-----
T ss_pred hhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH------------------HhChhHHHHHHHHHHHHHccc-----
Confidence 222345566666665543 4444443332111111 123333444555554444311
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccch
Q 002126 403 DDGMVDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDF 480 (962)
Q Consensus 403 ~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~--~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l 480 (962)
+ + .-|.++...+.++..-... +..+..+...+.. ...-.-..+++|++|-.++.+.. .
T Consensus 403 --~------~--~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~----~~~~~~~~~~~wilGey~~~~~~------~ 462 (591)
T 2vgl_B 403 --V------N--YVVQEAIVVIRDIFRKYPNKYESIIATLCENLDS----LDEPDARAAMIWIVGEYAERIDN------A 462 (591)
T ss_dssp --C------H--HHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTT----CCSHHHHHHHHHHHHTTCTTCTT------H
T ss_pred --c------h--HHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHcccccccC------H
Confidence 1 1 1233333344443322221 1133444333311 12234467888888877766542 1
Q ss_pred hHHHHH-HHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhc-c---cCchhHHHHHHHHH
Q 002126 481 SVIMQL-VAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGI-S---EAVSSNACASALRK 553 (962)
Q Consensus 481 ~~i~~~-l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l-~---~~~~~~~Aa~al~~ 553 (962)
+.++.. +..+...+. . ++. .++..+.+.+.++|+...+.+..++... . +++++.+|...++-
T Consensus 463 ~~~l~~l~~~~~~~~~-~------vr~----~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 463 DELLESFLEGFHDEST-Q------VQL----TLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp HHHHHHHSTTCSSSCH-H------HHH----HHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccCCH-H------HHH----HHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 334432 223333222 1 342 3455556666677876656666666543 2 34688888765543
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.34 E-value=10 Score=44.24 Aligned_cols=468 Identities=12% Similarity=0.054 Sum_probs=216.1
Q ss_pred CCChHHHHHHHHHHHHhhc-ChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 002126 19 DTESCNRVAANQWLVQFQQ-TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAA 97 (962)
Q Consensus 19 ~~d~~~~~~A~~~L~~~Q~-s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr~~Ll~~l 97 (962)
++|.+.|+-..-++..+-+ .++--.++..-|..+= .+.++.+|-.|+.+|-.-. +++....+-..+...+
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL--~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L 151 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDL--NHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLL 151 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--SCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc--CCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHH
Confidence 4455666666666666543 3442222222222110 0234577777777775432 2344444444454444
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhhcc-CCchHHHHHHHhhcccCCCcchHHHHHHHhhcccccccccccccCCCHHHHH
Q 002126 98 KRFSSGPPQLLTQICLALSALILRAVE-HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRS 176 (962)
Q Consensus 98 ~~~~~~~~~v~~kL~~aLa~l~~~~~~-W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~l~~~~r~ 176 (962)
. ..++.||++-+.++..++...++ =+++++.+...+.. .++......+..|..+.+.- .
T Consensus 152 ~---~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D--~d~~V~~~Al~~L~~i~~~~-----------~---- 211 (618)
T 1w63_A 152 K---TSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNE--KNHGVLHTSVVLLTEMCERS-----------P---- 211 (618)
T ss_dssp H---SCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTC--CCHHHHHHHHHHHHHHCCSH-----------H----
T ss_pred c---CCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCC--CCHhHHHHHHHHHHHHHHhC-----------h----
Confidence 3 45789999999999999876541 11222223333322 12222233444444333210 0
Q ss_pred HHHHHHHhhhhHHHHHHHHhHhhccCCC--CC-cchhhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC
Q 002126 177 QYGQELLSHTPMVVEFLMQQSDKRFDGG--VP-VQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ 253 (962)
Q Consensus 177 ~~~~~l~~~~~~v~~~l~~~l~~~~~~~--~~-~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~ 253 (962)
...+.+....+.++..|.+.......++ .. .+++-.+..+++++....... ++. ...+++.+...+...
T Consensus 212 ~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~------~~~--~~~~~~~L~~l~~~~ 283 (618)
T 1w63_A 212 DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND------DDS--SEAMNDILAQVATNT 283 (618)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC------HHH--HHTTHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC------HHH--HHHHHHHHHHHHhcc
Confidence 1123344566777777776544221110 00 023446677888887655421 111 123444444443211
Q ss_pred --------CcHHHHHHHHHHHHhcCCChhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhcChh
Q 002126 254 --------SSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPE 325 (962)
Q Consensus 254 --------~~~~~a~~~l~eil~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~ 325 (962)
...-.|+.++.. ...+ ..+...... .+. ..+.+.|.+.-.-....+..++..+...+.
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~---l~~~--~~l~~~a~~---~L~-~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~----- 349 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMD---IKSE--SGLRVLAIN---ILG-RFLLNNDKNIRYVALTSLLKTVQTDHNAVQ----- 349 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHH---SCCC--HHHHHHHHH---HHH-HHHTCSSTTTHHHHHHHHHHHHHHHHHHHG-----
T ss_pred ccccchHHHHHHHHHHHHHh---cCCC--HHHHHHHHH---HHH-HHHhCCCCchHHHHHHHHHHHHhhCHHHHH-----
Confidence 112233444433 2211 111111111 111 123334443222222334444444433332
Q ss_pred HHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 002126 326 ALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDG 405 (962)
Q Consensus 326 ~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~~p~~~~~~~~ 405 (962)
.....++.|...+ |..|...+++--+.+.+. .-...++.+++ ..+.- +
T Consensus 350 --~~~~~i~~~l~d~--d~~Ir~~alelL~~l~~~----------------~nv~~iv~eL~----~~l~~--~------ 397 (618)
T 1w63_A 350 --RHRSTIVDCLKDL--DVSIKRRAMELSFALVNG----------------NNIRGMMKELL----YFLDS--C------ 397 (618)
T ss_dssp --GGHHHHHHGGGSS--CHHHHHHHHHHHHHHCCS----------------SSTHHHHHHHH----HHHHH--C------
T ss_pred --HHHHHHHHHccCC--ChhHHHHHHHHHHHHccc----------------ccHHHHHHHHH----HHHHh--C------
Confidence 2345666777765 567877787755544321 01222233333 22210 0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHH
Q 002126 406 MVDLPDGLVQFRMNLVELLVDICQLLRS--ATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVI 483 (962)
Q Consensus 406 ~~d~~d~f~~fR~~~~d~l~~~~~il~~--~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i 483 (962)
| .+||..+...+..++.-..+ ..++..+++.+... .++-.-| .+..+..+....++ -....+..+
T Consensus 398 -----d--~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~----~~~v~~~-~~~~l~~ii~~~p~-l~~~~v~~L 464 (618)
T 1w63_A 398 -----E--PEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA----GSYVRDD-AVPNLIQLITNSVE-MHAYTVQRL 464 (618)
T ss_dssp -----C--HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT----GGGSCSS-HHHHHHHHHHHSCS-THHHHHHHH
T ss_pred -----C--HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhc----cchhHHH-HHHHHHHHHhcChh-HHHHHHHHH
Confidence 1 25787777777777765432 34565555443221 1122222 23334444333221 110012233
Q ss_pred HHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh-----------ChhchHHHHHHHHHhc-ccCchhHHHHHHH
Q 002126 484 MQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA-----------FQTNARPLLLFLAAGI-SEAVSSNACASAL 551 (962)
Q Consensus 484 ~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~-----------~p~~L~~vL~~l~~~l-~~~~~~~~Aa~al 551 (962)
.+.+..-..+.. +.. .+.+++|+|++.+.. +|..+...+.-++... .++.++..+..|+
T Consensus 465 ~~~l~~~~~~~~--------~~~-~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~ 535 (618)
T 1w63_A 465 YKAILGDYSQQP--------LVQ-VAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAI 535 (618)
T ss_dssp HHHHHHCCSCSH--------HHH-HHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHhcccccHH--------HHH-HHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 333332111121 223 346999999998864 3444555555555443 3456888889999
Q ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q 002126 552 RKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLI 598 (962)
Q Consensus 552 ~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~v 598 (962)
.++...+. ...+.+..+..... ...+.+-|.+.++....+
T Consensus 536 ~Kl~~~~~------~~~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 536 MKLSTRFT------CTVNRIKKVVSIYG-SSIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHHHTTCS------SCHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCc------chHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Confidence 88887553 23445555554432 344567777766655444
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.95 E-value=4.4 Score=46.36 Aligned_cols=341 Identities=12% Similarity=0.064 Sum_probs=166.4
Q ss_pred CCchhhhHHHHHHHhhhhccccCCCc-c-chhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchH-
Q 002126 452 IPWKEVETKLFALNVVSEVVLQEGQA-F-DFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNAR- 528 (962)
Q Consensus 452 ~~W~~~Ea~Lf~l~~iae~i~~~~~~-~-~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~- 528 (962)
.++.....++.+++.++..-...... . .-..+..++..+....... ++..+ +..++.++..-..+...+-
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~------v~~~A-~~~L~~l~~~~~~~~~~~~~ 158 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQ------LQFEA-AWALTNIASGTSENTKVVID 158 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHH------HHHHH-HHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHH------HHHHH-HHHHHHHhCCCHHHHHHHHh
Confidence 35777777888888775432210000 0 0011222333333221111 34444 4777777652111111111
Q ss_pred -HHHHHHHHhccc--CchhHHHHHHHHHHHHH---hhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccC
Q 002126 529 -PLLLFLAAGISE--AVSSNACASALRKICED---ASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSV 602 (962)
Q Consensus 529 -~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~---c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~l 602 (962)
.+++.|+..+.+ +.++..|+.++.+||.+ |+..+.....++.|..+.. ..-+...+...+.+++.+...-
T Consensus 159 ~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~----~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 159 HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN----EHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC----TTCCHHHHHHHHHHHHHHHCSS
T ss_pred CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh----cCCCHHHHHHHHHHHHHHHcCC
Confidence 367777777765 45899999999999965 3333321113444443321 1235677888888999988765
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHH-HHH
Q 002126 603 SNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIF-ALL 681 (962)
Q Consensus 603 p~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~-~~~ 681 (962)
|.... ... .+.+..+.+++... ++.. ...++..+..|+ .+- .... .++
T Consensus 235 ~~~~~--~~~----~~~l~~L~~lL~~~-------~~~v----~~~a~~aL~~l~---~~~-----------~~~~~~~~ 283 (528)
T 4b8j_A 235 PQPSF--EQT----RPALPALARLIHSN-------DEEV----LTDACWALSYLS---DGT-----------NDKIQAVI 283 (528)
T ss_dssp SCCCH--HHH----TTHHHHHHHHTTCC-------CHHH----HHHHHHHHHHHT---SSC-----------HHHHHHHH
T ss_pred CCCcH--HHH----HHHHHHHHHHHCCC-------CHHH----HHHHHHHHHHHH---cCC-----------HHHHHHHH
Confidence 44321 222 33344444444321 1111 112333333332 110 1111 111
Q ss_pred -HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhh-----HhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHH
Q 002126 682 -RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-----VTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEE 755 (962)
Q Consensus 682 -~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~-----~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~ 755 (962)
..++|.+..++. ..+..+.+.++.++..+........ ...+|.++..+... .....-.-+..++..
T Consensus 284 ~~g~v~~Lv~lL~---~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~A~~~L~n 355 (528)
T 4b8j_A 284 EAGVCPRLVELLL---HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN-----LKKSIKKEACWTISN 355 (528)
T ss_dssp HTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC-----CCHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHc---CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC-----CcHHHHHHHHHHHHH
Confidence 235666666654 2467888999999888765322211 12355555544321 122222223333333
Q ss_pred hcCCCCccchHHHHHH-HHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHh-hhHHHHhh-chhchHHHHHHHHHhh
Q 002126 756 FGHKDEYGPLFVTTFE-RFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRT-SRKEVLAA-SGALLEVSFQKAAICC 832 (962)
Q Consensus 756 ~g~~~~~~~~l~~l~~-~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~-~p~~~l~~-~~~~l~~~l~~~l~~l 832 (962)
+.... ...+..++. .+.... +..+. ..++++.......+..+... .|...-.. ....++ ..+..+
T Consensus 356 l~~~~--~~~~~~~~~~~~i~~L-~~lL~-----~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~----~L~~lL 423 (528)
T 4b8j_A 356 ITAGN--KDQIQAVINAGIIGPL-VNLLQ-----TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIK----PLCDLL 423 (528)
T ss_dssp HHTSC--HHHHHHHHHTTCHHHH-HHHHH-----HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHH----HHHHGG
T ss_pred HHCCC--HHHHHHHHHCCCHHHH-HHHHh-----cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH----HHHHHH
Confidence 32211 111222221 111111 22232 23788999988888888877 34432211 113333 444456
Q ss_pred ccCchhHHHHHHHHHHHHHhhh
Q 002126 833 TAMHRGAALAAMSYLSCFLEEC 854 (962)
Q Consensus 833 ~~~e~~~~~a~~~fl~~li~~~ 854 (962)
...+......++..+.+++...
T Consensus 424 ~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 424 ICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999988654
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=93.54 E-value=1.2 Score=51.31 Aligned_cols=293 Identities=10% Similarity=-0.023 Sum_probs=147.0
Q ss_pred hhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCC--CCcHHHHHHHHHHHHhcCCChhHHHHh-hhhhhHH
Q 002126 210 HDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQV--QSSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKE 286 (962)
Q Consensus 210 ~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~--~~~~~~a~~~l~eil~~~~~~~~~l~~-~~~~l~~ 286 (962)
..++..++.++..-..... . ....+.....++.++..|.+ +++.+.|+.+|..+.....+....++. ..+ +
T Consensus 145 ~~v~~~A~~~L~~l~~~~~--~-~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l---~ 218 (530)
T 1wa5_B 145 EMLQLEAAWALTNIASGTS--A-QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM---E 218 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCH--H-HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH---H
T ss_pred HHHHHHHHHHHHHHhCCCH--H-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcH---H
Confidence 4678888888876654210 0 01123446678888888864 467789999998887654333332221 111 1
Q ss_pred hhhhhhhccCcHhHHhhHHHHHHHHhHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHHHHhhcch
Q 002126 287 LLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDA 366 (962)
Q Consensus 287 ~~~~~~~~~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e~l~~~~~ 366 (962)
.+. ..+.+.+.+..+..+..+..++....+.. ........++.|+.+..++ |.++...++.....+.+. ..
T Consensus 219 ~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~----~~ 289 (530)
T 1wa5_B 219 PIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQP--DWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDG----PQ 289 (530)
T ss_dssp HHH-HGGGSCCHHHHHHHHHHHHHHHCCSSSCC--CHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSS----CH
T ss_pred HHH-HHhccCCHHHHHHHHHHHHHHhCCCCCCC--cHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC----CH
Confidence 111 23344566666666777666654320000 0001124566677776665 556665555444444321 11
Q ss_pred hhhhhhhhhhhhhHHHH-HHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCcHH---------H
Q 002126 367 SIAKNKKHVEDMFFSVF-SALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT---------F 436 (962)
Q Consensus 367 ~~~~~~~~~~~~~~~~~-~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~il~~~~---------~ 436 (962)
. ....++ ..++..++..+..+ + ...|.....++..++. +.+. .
T Consensus 290 ~----------~~~~~~~~~~v~~Lv~lL~~~------~---------~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~ 342 (530)
T 1wa5_B 290 E----------AIQAVIDVRIPKRLVELLSHE------S---------TLVQTPALRAVGNIVT--GNDLQTQVVINAGV 342 (530)
T ss_dssp H----------HHHHHHHTTCHHHHHHGGGCS------C---------HHHHHHHHHHHHHHTT--SCHHHHHHHHHTTH
T ss_pred H----------HHHHHHhcCcHHHHHHHHCCC------C---------hhhHHHHHHHHHHHHc--CCHHHHHHHHHcch
Confidence 0 011111 12334444444311 0 1344444444444432 2221 1
Q ss_pred HHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCC----CccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHH
Q 002126 437 IQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEG----QAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADV 512 (962)
Q Consensus 437 l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~----~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ 512 (962)
+..+...+ .+.+|...+.++++|+.++...+..- +...++.+++++.. .++. ++..+ +..
T Consensus 343 l~~L~~lL-----~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~--------v~~~a-~~a 406 (530)
T 1wa5_B 343 LPALRLLL-----SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV--AEYK--------TKKEA-CWA 406 (530)
T ss_dssp HHHHHHHT-----TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--SCHH--------HHHHH-HHH
T ss_pred HHHHHHHH-----cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCHH--------HHHHH-HHH
Confidence 22222222 13469999999999999986432100 00013444444432 1221 34444 478
Q ss_pred HHhhHHHHHhChh---chH--HHHHHHHHhccc--CchhHHHHHHHHHHHHHhhc
Q 002126 513 IGSYSKWISAFQT---NAR--PLLLFLAAGISE--AVSSNACASALRKICEDASA 560 (962)
Q Consensus 513 ig~ys~wl~~~p~---~L~--~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~ 560 (962)
++.++......|+ ++- .+++.|+..+.+ +.++..|..++.+++..+..
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~ 461 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 8877764321112 221 256666666664 55889999999999988764
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.51 E-value=1.2 Score=45.23 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhcCcchHHHHHHHHHHHhcCCCC
Q 002126 682 RVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDE 761 (962)
Q Consensus 682 ~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~~~~~~L~l~~~lv~~~g~~~~ 761 (962)
.++++.+...+. -..+..|.+.+|.++....+.++..+.++++.++..+...+.. +....-..+...+..+....
T Consensus 55 ~~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d--~~~~vr~~a~~aL~~~~~~~- 129 (242)
T 2qk2_A 55 GALVSALKKVIT--KDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKE--KKPNVVTALREAIDAIYAST- 129 (242)
T ss_dssp HHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHcC-
Confidence 355666766663 1267889999999999999999998989988888888887752 33333233333333333221
Q ss_pred ccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhh-hHHHHhhchhchHHHHHHHHHhhccCchhHH
Q 002126 762 YGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTS-RKEVLAASGALLEVSFQKAAICCTAMHRGAA 840 (962)
Q Consensus 762 ~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~-p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~ 840 (962)
.+..++..+ +..+. +.+|.+......++.+++.++ |..+.. +.+..++.....++.-.++..-
T Consensus 130 ---~~~~ll~~l-----~~~l~-----~~~~~vr~~~l~~l~~~l~~~~~~~~~~---~~l~~l~p~l~~~l~D~~~~VR 193 (242)
T 2qk2_A 130 ---SLEAQQESI-----VESLS-----NKNPSVKSETALFIARALTRTQPTALNK---KLLKLLTTSLVKTLNEPDPTVR 193 (242)
T ss_dssp ---CHHHHHHHH-----HHHTT-----CSCHHHHHHHHHHHHHHHTTCCGGGCCH---HHHHHHHHHHHHHHTSSCHHHH
T ss_pred ---CHHHHHHHH-----HHHHc-----CCChHHHHHHHHHHHHHHHHcCCCCccH---HHHHHHHHHHHHHhcCCChHHH
Confidence 133333322 22232 357999999999999998886 553222 3467778888888877777777
Q ss_pred HHHHHHHHHHHhhh
Q 002126 841 LAAMSYLSCFLEEC 854 (962)
Q Consensus 841 ~a~~~fl~~li~~~ 854 (962)
.+|..-+..+....
T Consensus 194 ~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 194 DSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 77777776666443
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.41 E-value=13 Score=42.55 Aligned_cols=98 Identities=6% Similarity=-0.019 Sum_probs=57.0
Q ss_pred hhhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC---CcHHHHHHHHHHHHhcCCChhHHHHh-hhhhh
Q 002126 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALLC-RVPFL 284 (962)
Q Consensus 209 ~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~---~~~~~a~~~l~eil~~~~~~~~~l~~-~~~~l 284 (962)
+.+.+..++.+++.-+.... .-|.+.+.....++.+.+.|... ++...|+.+|..+.....+..+.++. ..+
T Consensus 89 d~~~q~~a~~~~rklLs~~~--~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gai-- 164 (529)
T 3tpo_A 89 NLESQLQATQAARKLLSREK--QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI-- 164 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSSS--CCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH--
T ss_pred CHHHHHHHHHHHHHHHcCCC--CchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH--
Confidence 34566677777776665331 22345567888999999999643 45667888998887655333333321 111
Q ss_pred HHhhhhhhhccCcHhHHhhHHHHHHHHh
Q 002126 285 KELLLLPALTDGDEKVIGGLACLMSEIG 312 (962)
Q Consensus 285 ~~~~~~~~~~~~d~d~~~~l~~l~~~~~ 312 (962)
+.+. ..+.+++.+....-+..+..++
T Consensus 165 -p~Lv-~LL~s~~~~v~e~A~~aL~nLa 190 (529)
T 3tpo_A 165 -PAFI-SLLASPHAHISEQAVWALGNIA 190 (529)
T ss_dssp -HHHH-HHTTCSCHHHHHHHHHHHHHHH
T ss_pred -HHHH-HHHcCCCHHHHHHHHHHHHHHh
Confidence 1111 2345566666555555555554
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=92.44 E-value=23 Score=42.55 Aligned_cols=288 Identities=14% Similarity=0.052 Sum_probs=139.8
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhc---ChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCCh
Q 002126 7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQ---TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQS 83 (962)
Q Consensus 7 ~~v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~---s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~ 83 (962)
+.+...++.|.++ +...|..+-+.|....+ ...+|.....+|.++ +..+|--|+.+|..-....
T Consensus 115 ~~i~~lv~~L~~~-~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~------d~~vr~~A~~~L~~L~~~~------ 181 (780)
T 2z6g_A 115 SAHPTNVQRLAEP-SQMLKHAVVNLINYQDDAELATRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKE------ 181 (780)
T ss_dssp -----------CC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHTSH------
T ss_pred ccHHHHHHHhcCc-cHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCC------CHHHHHHHHHHHHHHhCCC------
Confidence 3456667777644 44555555555542211 256788888888753 3689999999998654421
Q ss_pred HHHH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhcc-----CCchHHHHHHHhhcccCCCcchHHHHHH
Q 002126 84 AAKD------ALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVE-----HGKPIEKLFYSLQNLQSQDNGNMAVLEM 152 (962)
Q Consensus 84 e~~~------~Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~~-----W~~~i~~li~~~~~~~~~~~~~~~lL~i 152 (962)
+.+. ..-..|+..+.. ..+..++..-+.+|..++..... -...++.++..+++. ++......+..
T Consensus 182 ~~~~~i~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~a 257 (780)
T 2z6g_A 182 ASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP--VDSVLFHAITT 257 (780)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHH
T ss_pred hhHHHHHhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHH
Confidence 1221 233334444432 23567888888888887643211 125566667666542 22233344555
Q ss_pred HhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccc
Q 002126 153 LTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEI 232 (962)
Q Consensus 153 L~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~ 232 (962)
|..|...-. ..+..+. . ..++..|...+.. ++..++..++.|+..|..-. .-
T Consensus 258 L~nLa~~~~-----------~~~~~v~----~--~g~v~~Lv~lL~~--------~~~~v~~~a~~aL~~La~~~---~e 309 (780)
T 2z6g_A 258 LHNLLLHQE-----------GAKMAVR----L--AGGLQKMVALLNK--------TNVKFLAITTDCLQILAYGN---QE 309 (780)
T ss_dssp HHHHHHHST-----------THHHHHH----H--TTHHHHHHHGGGC--------CCHHHHHHHHHHHHHHHTTC---HH
T ss_pred HHHHhCCCh-----------hhHHHHH----H--cCCHHHHHHHHhc--------CCHHHHHHHHHHHHHHhcCC---hH
Confidence 554443211 1111111 0 1233344444443 13457788899999887421 00
Q ss_pred cchhhhhcchHHHHHHhcCCCCc---HHHHHHHHHHHHhcCCChhHHHH-hhhhhhHHhhhhhhhccCcHhHHhhHHHHH
Q 002126 233 SQGSLAAHPLLNFVFNSLQVQSS---FDVAIEVLVELVGRHEGLPQALL-CRVPFLKELLLLPALTDGDEKVIGGLACLM 308 (962)
Q Consensus 233 ~~~~~~~~~ll~~~~~~L~~~~~---~~~a~~~l~eil~~~~~~~~~l~-~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~ 308 (962)
....+.....++.+...|.+.+. .+.++.++..+.. ..+....++ ...+ +.+. ..+.+.+.+..+..+..+
T Consensus 310 ~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l---~~Ll-~lL~~~~~~~~~~a~~~L 384 (780)
T 2z6g_A 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGM---QALG-LHLTDPSQRLVQNCLWTL 384 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHH---HHHG-GGTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchH---HHHH-HHHcCCchHHHHHHHHHH
Confidence 11123344567777777776532 3455666655543 333323222 1111 1111 234455666666666666
Q ss_pred HHHhHhhhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhH
Q 002126 309 SEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTL 351 (962)
Q Consensus 309 ~~~~e~~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~ 351 (962)
..++..... .......+..|+.+...+ +.++.+.+.
T Consensus 385 ~~L~~~~~~-----~~~~~~~i~~Lv~lL~~~--d~~vr~~A~ 420 (780)
T 2z6g_A 385 RNLSDAATK-----QEGMEGLLGTLVQLLGSD--DINVVTCAA 420 (780)
T ss_dssp HHHHTTCTT-----CSCCHHHHHHHHHHTTCS--CHHHHHHHH
T ss_pred HHHhccchh-----hhhhhhHHHHHHHHHcCC--CHHHHHHHH
Confidence 665543321 111234566777766654 455655443
No 37
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=92.22 E-value=6 Score=45.04 Aligned_cols=98 Identities=6% Similarity=-0.019 Sum_probs=59.8
Q ss_pred hhhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC---CcHHHHHHHHHHHHhcCCChhHHHHh-hhhhh
Q 002126 209 LHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALLC-RVPFL 284 (962)
Q Consensus 209 ~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~---~~~~~a~~~l~eil~~~~~~~~~l~~-~~~~l 284 (962)
+.+.+..+...++.-+.... .-|.+.+.....++.+.++|..+ ++...|+.+|..+.+...+..+.++. ..+
T Consensus 70 d~~~q~~a~~~~rklls~e~--~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaI-- 145 (510)
T 3ul1_B 70 NLESQLQATQAARKLLSREK--QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI-- 145 (510)
T ss_dssp CHHHHHHHHHHHHHHHTCSS--CCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH--
T ss_pred CHHHHHHHHHHHHHHhcCCC--CchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCH--
Confidence 34567777777777665431 23455677888999999999743 45678899999887755443343332 111
Q ss_pred HHhhhhhhhccCcHhHHhhHHHHHHHHh
Q 002126 285 KELLLLPALTDGDEKVIGGLACLMSEIG 312 (962)
Q Consensus 285 ~~~~~~~~~~~~d~d~~~~l~~l~~~~~ 312 (962)
+.+. ..+.+++.+..+.-+..+..++
T Consensus 146 -p~Lv-~lL~s~~~~v~e~A~~aL~nLa 171 (510)
T 3ul1_B 146 -PAFI-SLLASPHAHISEQAVWALGNIA 171 (510)
T ss_dssp -HHHH-HHTTCSCHHHHHHHHHHHHHHH
T ss_pred -HHHH-HHHcCCCHHHHHHHHHHHHHHH
Confidence 1111 2345566666666666666554
No 38
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=91.90 E-value=11 Score=46.71 Aligned_cols=60 Identities=8% Similarity=0.063 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhc---cCchhHHHHHHHHHHHHHhhhhhh
Q 002126 798 YTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCT---AMHRGAALAAMSYLSCFLEECLAS 857 (962)
Q Consensus 798 ~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~---~~e~~~~~a~~~fl~~li~~~~~~ 857 (962)
++.+++.++++....+.+.-+..++.+|++++.=++ ...|+....-.+++..+...+...
T Consensus 802 vL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~ 864 (1073)
T 3gjx_A 802 VLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPA 864 (1073)
T ss_dssp HHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHH
Confidence 556666677665554333212577888888887665 557888888899999998876653
No 39
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=91.85 E-value=31 Score=42.62 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHhhhhccccCC----------C--ccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHh
Q 002126 455 KEVETKLFALNVVSEVVLQEG----------Q--AFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA 522 (962)
Q Consensus 455 ~~~Ea~Lf~l~~iae~i~~~~----------~--~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~ 522 (962)
...|.++..+..+.|.+.... + ...++.+++++..+...+... . .++. .++..+..|+.-
T Consensus 161 ~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~-~---~~~~----~~l~~l~~wi~~ 232 (963)
T 2x19_B 161 GRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSP-S---CVRQ----KVLKCFSSWVQL 232 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCC-H---HHHH----HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-h---HHHH----HHHHHHHHHHcC
Confidence 467888888888876442110 0 012466777666554332211 0 0222 233344567763
Q ss_pred Chhc--hHHHHHHHHHhcccCchhHHHHHHHHHHHHH
Q 002126 523 FQTN--ARPLLLFLAAGISEAVSSNACASALRKICED 557 (962)
Q Consensus 523 ~p~~--L~~vL~~l~~~l~~~~~~~~Aa~al~~lc~~ 557 (962)
+... ..+++++++..+.+++++..|..++..+...
T Consensus 233 ~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 233 EVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQ 269 (963)
T ss_dssp SCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHHHTC
T ss_pred CCCcccchHHHHHHHHHhCCchHHHHHHHHHHHHHcc
Confidence 2222 2788999999999999999999999999864
No 40
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=91.69 E-value=34 Score=42.78 Aligned_cols=177 Identities=13% Similarity=0.157 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHH
Q 002126 546 ACASALRKICEDASALIDEPSNLEILMWIGEALEK-RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIG 624 (962)
Q Consensus 546 ~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~-~~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~ 624 (962)
.++..+..+|.-.+.. .++.+......... ...+-..++..+-++|.+...+..+.. ...+..++ ..+.
T Consensus 432 ~~~~~L~~l~~~~~~~-----~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e-~~~l~~v~----~~l~ 501 (1049)
T 3m1i_C 432 SEREVLVYLTHLNVID-----TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTE-KRFVVTVI----KDLL 501 (1049)
T ss_dssp HHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHH----HHHH
T ss_pred HHHHHHHHHHccCHHH-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhh-HHHHHHHH----HHHH
Confidence 5667777777443322 23333333332222 234456778888889988777654421 22233333 3333
Q ss_pred hhhcccCCCCCCCCchhhHHHhH-HHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhhhc-cchHH
Q 002126 625 KLIDGDNNHSLIHNPATYTQILS-SATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHM-ENGNL 702 (962)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~~~~-~~~~v 702 (962)
++..... .......++ .++..+.+.+..++. || ..+. +++..++. ... .+..|
T Consensus 502 ~l~~~~~-------~~~~~~~v~~~~~~~lgry~~~~~~------------~~--~~l~---~vl~~ll~-~l~~~~~~V 556 (1049)
T 3m1i_C 502 DLTVKKR-------GKDNKAVVASDIMYVVGQYPRFLKA------------HW--NFLR---TVILKLFE-FMHETHEGV 556 (1049)
T ss_dssp HHTTSSC-------SHHHHHHHHHHHHHHHHHCHHHHHH------------CH--HHHH---HHHHHHHH-HTTSSCHHH
T ss_pred HHHhhhc-------cccchHHHHHHHHHHHHHHHHHHHh------------HH--HHHH---HHHHHHHH-HhcCCCHHH
Confidence 3222110 000011111 123334444333321 22 2333 33444443 122 35799
Q ss_pred HHHHHHHHHHHHHhhhhhhH--------hhHHHHHHHHHHhhhhhcC--cchHHHHHHHHHHHhc
Q 002126 703 STAACRALSLAIQSSGQHFV--------TLLPQVLDCLSTNFVSFQN--HECYIRTASVVIEEFG 757 (962)
Q Consensus 703 ~e~~c~~~~~~~~~l~~~~~--------p~l~~~~~~l~~~f~~~~~--~~~~L~l~~~lv~~~g 757 (962)
..++|..+.+....++..+. |+++++++.+...+...+. ...++..++.++...+
T Consensus 557 ~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999998887765 8899988887765543211 1123344555555444
No 41
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.20 E-value=5.9 Score=40.21 Aligned_cols=154 Identities=6% Similarity=0.047 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh-hhhH-hhHHHHHHHHHHhhhhhcCcchH----HHHHHHHHHHh
Q 002126 683 VFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSG-QHFV-TLLPQVLDCLSTNFVSFQNHECY----IRTASVVIEEF 756 (962)
Q Consensus 683 ~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~-~~~~-p~l~~~~~~l~~~f~~~~~~~~~----L~l~~~lv~~~ 756 (962)
+++..+...+. -..+..+++.+|.++..+.+.++ +.+. ++...++..++..+.. ..... -..+..++...
T Consensus 60 ~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~d--kk~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 60 NLLGIYGHIIQ--KDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKE--KKPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGC--CCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHc
Confidence 34555555552 12567789999999999999998 7787 8888777777776642 32232 23344444433
Q ss_pred cCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhh---HHHHhhchhch-HHHHHHHHHhh
Q 002126 757 GHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSR---KEVLAASGALL-EVSFQKAAICC 832 (962)
Q Consensus 757 g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p---~~~l~~~~~~l-~~~l~~~l~~l 832 (962)
... ...+.+..++..+.. .+. ..+|.+....+.++.+++...+ ..|.. .+ ..++.....++
T Consensus 136 ~~~-~~~~~l~~ll~~l~~-----~l~-----~k~~~vk~~al~~l~~~~~~~~~~~~~l~~----~l~~~iip~l~~~l 200 (249)
T 2qk1_A 136 DPL-ASSGRNEDMLKDILE-----HMK-----HKTPQIRMECTQLFNASMKEEKDGYSTLQR----YLKDEVVPIVIQIV 200 (249)
T ss_dssp CTT-CTTCTTHHHHHHHHH-----HTT-----CSSHHHHHHHHHHHHHHHHHCCSCSHHHHH----HHTTTHHHHHHHHH
T ss_pred ccc-ccCCcHHHHHHHHHH-----HHc-----CCChHHHHHHHHHHHHHHHHcCCcchhHHH----HHHHHHHHHHHHHh
Confidence 221 111114444443322 232 2378999999999999999877 44442 35 56667777778
Q ss_pred ccCchhHHHHHHHHHHHHHhhhh
Q 002126 833 TAMHRGAALAAMSYLSCFLEECL 855 (962)
Q Consensus 833 ~~~e~~~~~a~~~fl~~li~~~~ 855 (962)
.-.+++...+|...+..+....+
T Consensus 201 ~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 201 NDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhC
Confidence 87788888888888887775544
No 42
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=89.98 E-value=26 Score=38.51 Aligned_cols=294 Identities=15% Similarity=0.075 Sum_probs=159.8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhhcC----------hHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCC
Q 002126 13 VHVLNHDTESCNRVAANQWLVQFQQT----------DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQ 82 (962)
Q Consensus 13 i~~ly~~~d~~~~~~A~~~L~~~Q~s----------~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~ 82 (962)
++.|-++.++..|..|-..|..+-.. ..+......+|.++ +.++|..|+.+|.+-... .
T Consensus 70 ~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~vr~~a~~~L~~l~~~-----~ 138 (450)
T 2jdq_A 70 VEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE------FEDVQEQAVWALGNIAGD-----S 138 (450)
T ss_dssp HHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHTT-----C
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC------CHHHHHHHHHHHHHHccC-----C
Confidence 33343333778888888888876542 23455666777643 468999999999876543 2
Q ss_pred hHHHHHHH-HHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhh-c--c---CCchHHHHHHHhhcccCCCcchHHHHHHH
Q 002126 83 SAAKDALL-NALLVAAKRFSS--GPPQLLTQICLALSALILRA-V--E---HGKPIEKLFYSLQNLQSQDNGNMAVLEML 153 (962)
Q Consensus 83 ~e~~~~Lr-~~Ll~~l~~~~~--~~~~v~~kL~~aLa~l~~~~-~--~---W~~~i~~li~~~~~~~~~~~~~~~lL~iL 153 (962)
++.+..+. ...+..+..... .+..++...+.+|+.++... + . -...++.++..+... ++......+..|
T Consensus 139 ~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L 216 (450)
T 2jdq_A 139 TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS--DTDVLADACWAL 216 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC--CHHHHHHHHHHH
Confidence 33333332 234445544333 45788999999999988543 2 1 245677777777642 233334455555
Q ss_pred hhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccc
Q 002126 154 TVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEIS 233 (962)
Q Consensus 154 ~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~ 233 (962)
..+.+.. ...+..+.. ....+.++. .+.. ++..++..++.++..-.... .-.
T Consensus 217 ~~l~~~~-----------~~~~~~~~~--~~~i~~L~~----ll~~--------~~~~v~~~a~~~L~~l~~~~---~~~ 268 (450)
T 2jdq_A 217 SYLSDGP-----------NDKIQAVID--AGVCRRLVE----LLMH--------NDYKVVSPALRAVGNIVTGD---DIQ 268 (450)
T ss_dssp HHHTSSS-----------HHHHHHHHH--TTTHHHHHH----HTTC--------SCHHHHHHHHHHHHHHTTSC---HHH
T ss_pred HHHHCCC-----------cHHHHHHHH--cCcHHHHHH----HHCC--------CchhHHHHHHHHHHHHhhCC---hHH
Confidence 5554321 111111111 112333333 3332 23567888888887655421 000
Q ss_pred chhhhhcchHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCChhHHHHh-hhhhhHHhhhhhhhccCcHhHHhhHHHHHHH
Q 002126 234 QGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMSE 310 (962)
Q Consensus 234 ~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eil~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~ 310 (962)
...+.....++.+...|.++ .....|+.++..+.....+..+.++. .++ +.+. ..+.+++.+.....+..+..
T Consensus 269 ~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l---~~L~-~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 269 TQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF---PALI-SILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH---HHHH-HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH---HHHH-HHHhcCCHHHHHHHHHHHHH
Confidence 11133456888899999865 45678888888877644333232221 111 1111 23345566666666666666
Q ss_pred HhHh----hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHH
Q 002126 311 IGQA----APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358 (962)
Q Consensus 311 ~~e~----~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~ 358 (962)
++.. ....+.+ ...++.|+.+...+ +.++.+.++.....+.
T Consensus 345 l~~~~~~~~~~~l~~-----~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVE-----LGCIKPLCDLLTVM--DSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHHCCHHHHHHHHH-----HTCHHHHHHGGGSS--CHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH-----CCCHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 6543 2222221 12456666776664 5666666655544443
No 43
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=89.48 E-value=37 Score=39.53 Aligned_cols=109 Identities=9% Similarity=-0.023 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccC--chhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhc
Q 002126 504 IVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA--VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKR 581 (962)
Q Consensus 504 v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~--~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~ 581 (962)
+|..+ ++++|... .|+..+.+++.+.+.+.++ .++..|+.++.++++.+...+ +.+.+.+.....
T Consensus 123 vr~lA-L~~L~~i~-----~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--~~~~~~l~~lL~----- 189 (618)
T 1w63_A 123 VQGLA-LCTLGCMG-----SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--EMFLPATKNLLN----- 189 (618)
T ss_dssp HHHHH-HHHHHHHC-----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--GGGGGGTTTSTT-----
T ss_pred HHHHH-HHHHHhcC-----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--HHHHHHHHHHhC-----
Confidence 44444 47888764 5777788888888888764 499999999999999876543 122222222111
Q ss_pred CCChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhc
Q 002126 582 HLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID 628 (962)
Q Consensus 582 ~l~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~ 628 (962)
.-+...+...+.+++.+...-| + ....+..++..++..|.++..
T Consensus 190 D~d~~V~~~Al~~L~~i~~~~~--~-~~~~~~~~v~~l~~~L~~~~~ 233 (618)
T 1w63_A 190 EKNHGVLHTSVVLLTEMCERSP--D-MLAHFRKLVPQLVRILKNLIM 233 (618)
T ss_dssp CCCHHHHHHHHHHHHHHCCSHH--H-HHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHhCh--H-HHHHHHHHHHHHHHHHHHHHc
Confidence 1133444455555555543211 1 123344555555555555543
No 44
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=88.80 E-value=7.1 Score=40.80 Aligned_cols=169 Identities=12% Similarity=0.175 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHH-----hcC-CCCcHH-HHHHHHHHHHhcCCChhHHHHhhhhh
Q 002126 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFN-----SLQ-VQSSFD-VAIEVLVELVGRHEGLPQALLCRVPF 283 (962)
Q Consensus 211 ~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~-----~L~-~~~~~~-~a~~~l~eil~~~~~~~~~l~~~~~~ 283 (962)
.++.++|+=+..||.... +.+. ....+++.+++ .-. .|+.++ ...+++..++.+-.+.....+|.++.
T Consensus 44 ~vKkeiLkLiet~i~~~~----d~~~-v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~ 118 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSN----DPQM-VAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD 118 (321)
T ss_dssp HHHHHHHHHHHHHHTTCS----CHHH-HHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC----CHHH-HHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 367788888889987531 2222 22334444442 222 245554 45667777777654333222333322
Q ss_pred h--HHhhhhhhhc---cCcHhHHhhHHHHHHHHhHhhhHHHHhcCh-hHHHHHHHHHhcccCCCCCchhhhhhHHHHHHH
Q 002126 284 L--KELLLLPALT---DGDEKVIGGLACLMSEIGQAAPSLIVEASP-EALALADALLSCVAFPSEDWEIADSTLQFWSTL 357 (962)
Q Consensus 284 l--~~~~~~~~~~---~~d~d~~~~l~~l~~~~~e~~~~~l~~~~~-~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l 357 (962)
. ...+ ..+. ++-+|-..++.+++-++..++.+.+..-|+ .+..+++.++....|+ +++|++..+.--..|
T Consensus 119 ~VFe~TL--~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~--~r~V~e~gL~il~~l 194 (321)
T 1w9c_A 119 AVFECTL--NMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT--MRNVADTGLQILFTL 194 (321)
T ss_dssp HHHHHHH--HHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHH
Confidence 1 1111 1222 344677778899999888887777776554 5677899999999998 799999888877776
Q ss_pred HHHHhhcchhhhhhhhhhhhhhHHHHHHHHHHHHHHhc
Q 002126 358 ASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQ 395 (962)
Q Consensus 358 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~k~~ 395 (962)
.+.+... + +...+.|+.+|..+++.++.-++
T Consensus 195 l~n~~~~-~------~~~~~Fy~~fy~~il~~if~VlT 225 (321)
T 1w9c_A 195 LQNVAQE-E------AAAQSFYQTYFCDILQHIFSVVT 225 (321)
T ss_dssp HHHHHHC-H------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-h------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655321 1 12345667777777766655553
No 45
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=86.61 E-value=47 Score=37.49 Aligned_cols=287 Identities=14% Similarity=0.066 Sum_probs=154.7
Q ss_pred ChHHHHHHHHHHHHhhcC-hH---------HHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHHHH
Q 002126 21 ESCNRVAANQWLVQFQQT-DA---------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALL 90 (962)
Q Consensus 21 d~~~~~~A~~~L~~~Q~s-~~---------aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr 90 (962)
++..+..|-..|..+-.. ++ +-.....+|..+ +.+++.-|+.+|.+-... +++.+..+.
T Consensus 131 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~------~~~v~~~a~~aL~~l~~~-----~~~~~~~i~ 199 (528)
T 4b8j_A 131 FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS------SDDVREQAVWALGNVAGD-----SPKCRDLVL 199 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHHHT-----CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC------CHHHHHHHHHHHHHHhCC-----ChhhHHHHH
Confidence 377888888888877664 33 344455666542 468999999999876542 233333333
Q ss_pred H-HHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhhc--c---CCchHHHHHHHhhcccCCCcchHHHHHHHhhccccccc
Q 002126 91 N-ALLVAAKRFS--SGPPQLLTQICLALSALILRAV--E---HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID 162 (962)
Q Consensus 91 ~-~Ll~~l~~~~--~~~~~v~~kL~~aLa~l~~~~~--~---W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~ 162 (962)
+ ..+..|.... ..+..++...+.+|+.++...+ . -...++.++..+... ++......+..|..+...-
T Consensus 200 ~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~-- 275 (528)
T 4b8j_A 200 ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALSYLSDGT-- 275 (528)
T ss_dssp HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSC--
T ss_pred HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCC--
Confidence 2 2334444333 3457889999999999986532 1 245677777777542 2333344555555554321
Q ss_pred ccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcch
Q 002126 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242 (962)
Q Consensus 163 ~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~l 242 (962)
......+ .. ..++..|...+.. ++..++..++.++..-.... .-....+.....
T Consensus 276 ---------~~~~~~~----~~--~g~v~~Lv~lL~~--------~~~~v~~~a~~~L~nl~~~~---~~~~~~~~~~~~ 329 (528)
T 4b8j_A 276 ---------NDKIQAV----IE--AGVCPRLVELLLH--------PSPSVLIPALRTVGNIVTGD---DAQTQCIIDHQA 329 (528)
T ss_dssp ---------HHHHHHH----HH--TTCHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSC---HHHHHHHHTTTH
T ss_pred ---------HHHHHHH----HH--cCHHHHHHHHHcC--------CChhHHHHHHHHHHHHHcCC---HHHHHHHHHhhh
Confidence 1111111 11 1123333333332 23467888888887655421 001112345677
Q ss_pred HHHHHHhcCCC---CcHHHHHHHHHHHHhcCCChhHHHHh-hhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhHh----
Q 002126 243 LNFVFNSLQVQ---SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQA---- 314 (962)
Q Consensus 243 l~~~~~~L~~~---~~~~~a~~~l~eil~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e~---- 314 (962)
++.+...|.++ .+...|+.+|..+.....+..+.++. .++ +.+. ..+.++|.+.....+..+..++..
T Consensus 330 l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i---~~L~-~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 405 (528)
T 4b8j_A 330 LPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII---GPLV-NLLQTAEFDIKKEAAWAISNATSGGSHD 405 (528)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH---HHHH-HHHHHSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH---HHHH-HHHhcCCHHHHHHHHHHHHHHHcCCCHH
Confidence 88888888655 45678888888877643332233221 121 1111 133445666666666666655443
Q ss_pred hhHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhHHHHHHHHH
Q 002126 315 APSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLAS 359 (962)
Q Consensus 315 ~~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~~FW~~l~e 359 (962)
....+.+. ..++.|+.+...+ |.++...++.....+..
T Consensus 406 ~~~~l~~~-----~~i~~L~~lL~~~--d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 406 QIKYLVSE-----GCIKPLCDLLICP--DIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHT-----TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-----CCHHHHHHHHcCC--CHHHHHHHHHHHHHHHH
Confidence 22223221 2355666666665 56777766666555543
No 46
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=86.03 E-value=17 Score=36.28 Aligned_cols=191 Identities=15% Similarity=0.090 Sum_probs=111.2
Q ss_pred hHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHHH-HHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 002126 39 DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDAL-LNALLVAAKRFS-SGPPQLLTQICLALS 116 (962)
Q Consensus 39 ~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~L-r~~Ll~~l~~~~-~~~~~v~~kL~~aLa 116 (962)
+..|..-..+|.++ +.+++.-|+..|+..+.. +.+....+ ....+..+...- .++..++...+.+|.
T Consensus 11 ~~~~~~~~~~L~s~------~~~~~~~a~~~L~~~l~~-----~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 79 (252)
T 4db8_A 11 GSELPQMTQQLNSD------DMQEQLSATRKFSQILSD-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79 (252)
T ss_dssp TCSHHHHHHHHHSS------CSSHHHHHHHHHHHHHHH-----HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCC------CHHHHHHHHHHHHHHHcC-----CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34466677778764 368999999999877764 22333332 233455554433 345778888888899
Q ss_pred HHHhhhcc------CCchHHHHHHHhhcccCCCcchHHHHHHHhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHH
Q 002126 117 ALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVV 190 (962)
Q Consensus 117 ~l~~~~~~------W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~ 190 (962)
.++..... ....++.++..+.+. ++......+..|..+...- ..+...+.+ ..++
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~~~~------~~~i 140 (252)
T 4db8_A 80 NIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG-----------NEQIQAVID------AGAL 140 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSC-----------HHHHHHHHH------TTHH
T ss_pred HHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCC-----------chHHHHHHH------CCCH
Confidence 88864321 234667777777652 3334445566666554321 111111111 1234
Q ss_pred HHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC--CcHHHHHHHHHHHHh
Q 002126 191 EFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVG 268 (962)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eil~ 268 (962)
..|...+.. ++..++..++.++..-.... .-....+.....++.+.+.|.++ ++...|+.+|..+..
T Consensus 141 ~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 141 PALVQLLSS--------PNEQILQEALWALSNIASGG---NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHGGGC--------SCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhC--------CCHHHHHHHHHHHHHHHcCC---hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 444444443 23467888888887665421 00011234567889999999765 456788899988875
Q ss_pred cC
Q 002126 269 RH 270 (962)
Q Consensus 269 ~~ 270 (962)
..
T Consensus 210 ~~ 211 (252)
T 4db8_A 210 GG 211 (252)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=84.61 E-value=37 Score=34.49 Aligned_cols=217 Identities=14% Similarity=0.089 Sum_probs=117.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHH
Q 002126 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (962)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~ 88 (962)
+...+..| .++|+..|..|-..|.++. ++++......+|..+ +..+|..|+..|.. +.. +.+....
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d~------~~~vR~~A~~aL~~-l~~-----~~~~~~~ 90 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSDK------NYIRRDIGAFILGQ-IKI-----CKKCEDN 90 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCS------SHHHHHHHHHHHHH-SCC-----CTTTHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcCC------CHHHHHHHHHHHHH-hcc-----ccccchH
Confidence 34444444 4678899999999999887 688999999999754 36899999998853 221 1122222
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhcc-CCchHHHHHHHhhcccCCCcchHHHHHHHhhcccc-cccc--c
Q 002126 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVE-HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-VIDS--Q 164 (962)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~~-W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE-~~~~--~ 164 (962)
+...|...+.+ ..+..|+...+.+|+.+....+. .+..++.++..+... ++.........|..+..+ .... .
T Consensus 91 l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~~~~~~~L~~ 166 (280)
T 1oyz_A 91 VFNILNNMALN--DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK--STNVRRATAFAISVINDKATIPLLIN 166 (280)
T ss_dssp HHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC---CCHHHHHH
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 22223222222 45678999999999888744322 234455555555431 121122222222222211 0000 0
Q ss_pred ccccCCCHHHHHHHHHHHHh---hhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcc
Q 002126 165 ASDCNISSAHRSQYGQELLS---HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHP 241 (962)
Q Consensus 165 ~~~~~l~~~~r~~~~~~l~~---~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ 241 (962)
.+.. -....|......+.. ..+.++..|...+.. ++..++..++.++... + ...
T Consensus 167 ~l~d-~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d--------~~~~vR~~A~~aL~~~---~-----------~~~ 223 (280)
T 1oyz_A 167 LLKD-PNGDVRNWAAFAININKYDNSDIRDCFVEMLQD--------KNEEVRIEAIIGLSYR---K-----------DKR 223 (280)
T ss_dssp HHTC-SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC--------SCHHHHHHHHHHHHHT---T-----------CGG
T ss_pred HHcC-CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHh---C-----------CHh
Confidence 0000 012234443444433 245556656555432 2345676776666432 1 234
Q ss_pred hHHHHHHhcCCCCcHHHHHHHHHHH
Q 002126 242 LLNFVFNSLQVQSSFDVAIEVLVEL 266 (962)
Q Consensus 242 ll~~~~~~L~~~~~~~~a~~~l~ei 266 (962)
.++.+...|.+++....|++++..+
T Consensus 224 ~~~~L~~~l~d~~vr~~a~~aL~~i 248 (280)
T 1oyz_A 224 VLSVLCDELKKNTVYDDIIEAAGEL 248 (280)
T ss_dssp GHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred hHHHHHHHhcCccHHHHHHHHHHhc
Confidence 6677777778888777888777665
No 48
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=83.42 E-value=32 Score=37.81 Aligned_cols=132 Identities=11% Similarity=0.089 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHh--hhc-cchHHHHHHHHHHHHHHHhh--hhhhHhhHHHHHHHHHHhhhhhcCcc-----hHHHHHH
Q 002126 681 LRVFWPMLEKLFRS--EHM-ENGNLSTAACRALSLAIQSS--GQHFVTLLPQVLDCLSTNFVSFQNHE-----CYIRTAS 750 (962)
Q Consensus 681 ~~~i~~~l~~i~~~--~~~-~~~~v~e~~c~~~~~~~~~l--~~~~~p~l~~~~~~l~~~f~~~~~~~-----~~L~l~~ 750 (962)
.+++.+++...... .|. .|.+.+++...|+++++..+ +.+...|+.-+++.++-.+..- +.+ -=|.++.
T Consensus 213 ~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L-~e~~~~~~~kL~LLK 291 (507)
T 3u0r_A 213 RQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTL-TTPVEGLDIQLEVLK 291 (507)
T ss_dssp HHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCC-CCC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhc-cccccchHHHHHHHH
Confidence 46677777776532 244 79999999999999997765 4456678888888877666533 222 2356666
Q ss_pred HHHHH--h-cCCCCccchHHHHHHHHhhhHHHHHhhcC----CC-CCCCCch----HHHHHHHHHHHHHhhhHHHHh
Q 002126 751 VVIEE--F-GHKDEYGPLFVTTFERFSQAASVRALNSS----YI-CDQEPDL----VEAYTNFASTFVRTSRKEVLA 815 (962)
Q Consensus 751 ~lv~~--~-g~~~~~~~~l~~l~~~l~~~~~~~~l~~~----~~-~~~~pD~----~~~~f~l~~~~l~~~p~~~l~ 815 (962)
.+... | |+.+.....+..+|..|... ++..... .+ ..+.|++ ++.++-.++++.+++|..+..
T Consensus 292 ~lAE~s~~~~~~e~a~~~l~~iy~~L~~y--mP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e 366 (507)
T 3u0r_A 292 LLAEMSSFCGDMEKLETNLRKLFDKLLEY--MPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA 366 (507)
T ss_dssp HHHHHHTTCCCCTTHHHHHHHHHHHHHTT--SCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHC
T ss_pred HHHHHccCCCccchHHHHHHHHHHHHHHH--CCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc
Confidence 65542 2 32222222343344433221 1111000 00 0122333 677888889999999998855
No 49
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=80.55 E-value=1.2e+02 Score=37.41 Aligned_cols=168 Identities=12% Similarity=-0.015 Sum_probs=86.2
Q ss_pred HHHHHHHHH--hhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhhhc-Cc-------------------
Q 002126 685 WPMLEKLFR--SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQ-NH------------------- 742 (962)
Q Consensus 685 ~~~l~~i~~--~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~~~-~~------------------- 742 (962)
-|++..++. -....+..|..++|..+++..+.++..+.|+++++++.+...+.... +.
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDF 613 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTH
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCc
Confidence 445555543 11224568999999999999999999999999998887765443210 10
Q ss_pred chHH---HHHHHHHHHhcCCC-CccchHHHHHHHHhhhHHHHHhhcCCCCCCCCc--hHHHHHHHHHHHHHhhhHHHHhh
Q 002126 743 ECYI---RTASVVIEEFGHKD-EYGPLFVTTFERFSQAASVRALNSSYICDQEPD--LVEAYTNFASTFVRTSRKEVLAA 816 (962)
Q Consensus 743 ~~~L---~l~~~lv~~~g~~~-~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD--~~~~~f~l~~~~l~~~p~~~l~~ 816 (962)
..-+ ..++.++...+..+ .....+..++..+.+.. -..+... .....+ -++..+.-++++.+..+..=...
T Consensus 614 ~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l-~~~l~~~--~~~~~~~~~i~~~i~al~~lakgf~~~~~~~ 690 (980)
T 3ibv_A 614 NSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKA-NAALSSD--LSALENIISVYCSLMAIGNFAKGFPARGSEE 690 (980)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH-HHHHTTS--CC--CHHHHHHHHHHHHHHHHHTSCSCC-CC
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH-HHHHhhc--ccCccHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 0122 34566666554321 11223334444333321 1112211 111111 23344444555555432210000
Q ss_pred c--hhchHHHHHHHHHhhc--cCchhHHHHHHHHHHHHHhhhh
Q 002126 817 S--GALLEVSFQKAAICCT--AMHRGAALAAMSYLSCFLEECL 855 (962)
Q Consensus 817 ~--~~~l~~~l~~~l~~l~--~~e~~~~~a~~~fl~~li~~~~ 855 (962)
. ...+..+.+..+.++. ..+..+..+++.++..++..-+
T Consensus 691 ~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg 733 (980)
T 3ibv_A 691 VAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVG 733 (980)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 0 0234445555555554 3456677778888888886544
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.18 E-value=25 Score=43.00 Aligned_cols=208 Identities=12% Similarity=0.085 Sum_probs=115.6
Q ss_pred hhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh----chHHH
Q 002126 455 KEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT----NARPL 530 (962)
Q Consensus 455 ~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~----~L~~v 530 (962)
.-.+|+-.++.++...++++.-. ..++.++..+....+=+ ... .++.+++++.+ ..|+ .|+.+
T Consensus 110 ~v~~aa~~~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~kw~------~k~-~~l~~~~~~~~---~~~~~~~~~~~~~ 176 (986)
T 2iw3_A 110 EIQSVASETLISIVNAVNPVAIK---ALLPHLTNAIVETNKWQ------EKI-AILAAFSAMVD---AAKDQVALRMPEL 176 (986)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHH---HHHHHHHHHHHHCCCHH------HHH-HHHHHHHHHHH---HSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHHhccccchH------HHH-HHHHHHHHHHH---HhHHHHHHhccch
Confidence 45688888888888888764321 22333444443222111 122 22577777664 4465 56778
Q ss_pred HHHHHHhccc--CchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc--CCchH
Q 002126 531 LLFLAAGISE--AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS--VSNKE 606 (962)
Q Consensus 531 L~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~--lp~~e 606 (962)
++.+..++.+ |+++.+|-+++.++|.-....-.. +++|.|..+... ++. +-|+|-.+.+. +..-+
T Consensus 177 ~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-~~~~~~~~~~~~-------p~~---~~~~~~~l~~~tfv~~v~ 245 (986)
T 2iw3_A 177 IPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-RFIPSLIQCIAD-------PTE---VPETVHLLGATTFVAEVT 245 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-GGHHHHHHHHHC-------TTH---HHHHHHHHTTCCCCSCCC
T ss_pred hcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-hhHHHHHHHhcC-------hhh---hHHHHHHhhcCeeEeeec
Confidence 8888888886 679999999999999755543332 377877777652 333 33333333222 11111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHH
Q 002126 607 LKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWP 686 (962)
Q Consensus 607 ~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~ 686 (962)
...| .++-|++.+= +... ..... .+..-.++.++.+... +.-+.+++-+++|
T Consensus 246 --~~~l-~~~~p~l~r~---l~~~--------~~~~~---r~~~~~~~n~~~lv~~-----------~~~~~~f~~~l~p 297 (986)
T 2iw3_A 246 --PATL-SIMVPLLSRG---LNER--------ETGIK---RKSAVIIDNMCKLVED-----------PQVIAPFLGKLLP 297 (986)
T ss_dssp --HHHH-HHHHHHHHHH---HTSS--------SHHHH---HHHHHHHHHHHTTCCC-----------HHHHHHHHTTTHH
T ss_pred --chhH-HHHHHHHHhh---hccC--------cchhh---eeeEEEEcchhhhcCC-----------HHHHhhhhhhhhh
Confidence 1223 5666777542 2211 00110 1223345555543321 1225566677888
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHh
Q 002126 687 MLEKLFRSEHMENGNLSTAACRALSLAIQS 716 (962)
Q Consensus 687 ~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~ 716 (962)
-++.+.+ -..++|+.|.+-+.+....+.
T Consensus 298 ~~~~~~~--~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 298 GLKSNFA--TIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHTT--TCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh--ccCCHHHHHHHHHHHHHHHHh
Confidence 8888875 457888887766666665443
No 51
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=78.81 E-value=52 Score=32.33 Aligned_cols=220 Identities=16% Similarity=0.112 Sum_probs=129.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcChH----------HHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCC
Q 002126 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDA----------AWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEG 78 (962)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~----------aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~ 78 (962)
|...+..|. +++++.+..|-..|..+-.... +......+|.++ +.+++..|+.+|.+-...
T Consensus 4 i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------~~~v~~~a~~~L~~l~~~-- 74 (252)
T 4hxt_A 4 VEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST------DSEVQKEAARALANIASG-- 74 (252)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS------CHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC------CHHHHHHHHHHHHHHHcC--
Confidence 334444444 5568888899999988755433 455566777653 368999999999866542
Q ss_pred CCCChHHHHHHHH-HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhcc------CCchHHHHHHHhhcccCCCcchHHHH
Q 002126 79 YYLQSAAKDALLN-ALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVL 150 (962)
Q Consensus 79 ~~l~~e~~~~Lr~-~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~~~~~~------W~~~i~~li~~~~~~~~~~~~~~~lL 150 (962)
+++.+..+.+ ..+..+.... .++..++...+.+|+.++..... -...++.++..+.+. ++......+
T Consensus 75 ---~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~ 149 (252)
T 4hxt_A 75 ---PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAA 149 (252)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHH
T ss_pred ---ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHH
Confidence 2344443332 2455554433 45678899999999998853221 135677777777652 233344555
Q ss_pred HHHhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccc
Q 002126 151 EMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFT 230 (962)
Q Consensus 151 ~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~ 230 (962)
..|..+... .+..+..+. . ..++..|...+.. ++..++..++.++..-....
T Consensus 150 ~~L~~l~~~-----------~~~~~~~~~----~--~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~--- 201 (252)
T 4hxt_A 150 RALANIASG-----------PDEAIKAIV----D--AGGVEVLVKLLTS--------TDSEVQKEAARALANIASGP--- 201 (252)
T ss_dssp HHHHHHTTS-----------CHHHHHHHH----H--TTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSB---
T ss_pred HHHHHHHcC-----------CHHHHHHHH----H--CcCHHHHHHHHCC--------CCHHHHHHHHHHHHHHHcCC---
Confidence 555555432 111211111 1 1234444444442 23568888888888766421
Q ss_pred cccchhhhhcchHHHHHHhcCCC--CcHHHHHHHHHHHHhcC
Q 002126 231 EISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (962)
Q Consensus 231 ~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eil~~~ 270 (962)
.-....+.....++.+.+.+.++ ++.+.|+.+|..+....
T Consensus 202 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 202 TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 00111234567888888888754 55678888887777644
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=78.50 E-value=61 Score=39.57 Aligned_cols=233 Identities=13% Similarity=0.133 Sum_probs=122.5
Q ss_pred hHHHHHHHhhhhccccCCCccchhHHHHHHHHh----ccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHH
Q 002126 458 ETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVL----SASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLF 533 (962)
Q Consensus 458 Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l----~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~ 533 (962)
|+++.++.++++....... . -|.++.+++.+ .+... .|+.++ -..+..+.. .-+|.-+..+|+.
T Consensus 70 ~~a~~~~~~~~~~~~~~~~-~-e~~~~~~~~~~~~~~~dk~~-------~v~~aa-~~~~~~~~~--~~~~~a~~~~~~~ 137 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPS-V-EPYIVQLVPAICTNAGNKDK-------EIQSVA-SETLISIVN--AVNPVAIKALLPH 137 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTT-T-HHHHHTTHHHHHHHTTCSSH-------HHHHHH-HHHHHHHHH--HSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCC-c-ccchHHHHHHHHHHhcCCch-------HHHHHH-HHHHHHHHH--hCCHHHHHHHHHH
Confidence 9999999999876643111 1 15554444433 22221 133222 133333322 3477778889999
Q ss_pred HHHhcccCc---hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCCchHHHHH
Q 002126 534 LAAGISEAV---SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNN 610 (962)
Q Consensus 534 l~~~l~~~~---~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~lp~~e~~~~ 610 (962)
++.++.... ....|...+.++++.++..+. ..++.+.-+..... ...+.+....-.+++-.+.+.+.+.+ +.
T Consensus 138 ~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~~~~n~d-~~- 212 (986)
T 2iw3_A 138 LTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA--LRMPELIPVLSETM-WDTKKEVKAAATAAMTKATETVDNKD-IE- 212 (986)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH--HHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGGGCCCTT-TG-
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHhHHHHH--HhccchhcchHhhc-ccCcHHHHHHHHHHHHHHHhcCCCcc-hh-
Confidence 999987543 567888889999998876552 24444444433221 23445555444444444444444433 11
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccccccCCCCCCCCchHHHHHHHHHHHHHH
Q 002126 611 LLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEK 690 (962)
Q Consensus 611 ~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~ 690 (962)
|.+..|-.++... . .+-.+++.|++.- +... -..|.+. -+.|++..
T Consensus 213 -------~~~~~~~~~~~~p---------~-------~~~~~~~~l~~~t--fv~~------v~~~~l~---~~~p~l~r 258 (986)
T 2iw3_A 213 -------RFIPSLIQCIADP---------T-------EVPETVHLLGATT--FVAE------VTPATLS---IMVPLLSR 258 (986)
T ss_dssp -------GGHHHHHHHHHCT---------T-------HHHHHHHHHTTCC--CCSC------CCHHHHH---HHHHHHHH
T ss_pred -------hhHHHHHHHhcCh---------h-------hhHHHHHHhhcCe--eEee------ecchhHH---HHHHHHHh
Confidence 2222222333321 1 1234566665210 1111 1245444 45899888
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHhh--hhhhHhhHHHHHHHHHHhhhhhcCcchH
Q 002126 691 LFRSEHMENGNLSTAACRALSLAIQSS--GQHFVTLLPQVLDCLSTNFVSFQNHECY 745 (962)
Q Consensus 691 i~~~~~~~~~~v~e~~c~~~~~~~~~l--~~~~~p~l~~~~~~l~~~f~~~~~~~~~ 745 (962)
-+.. ....+-...+-++.++-+-. ..+..||+|.++.-+-..+... ..+..
T Consensus 259 ~l~~---~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~-~~pe~ 311 (986)
T 2iw3_A 259 GLNE---RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATI-ADPEA 311 (986)
T ss_dssp HHTS---SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTC-CSHHH
T ss_pred hhcc---CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhcc-CCHHH
Confidence 8752 33444455555555554433 2356788888888777666533 44443
No 53
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=76.40 E-value=1.1e+02 Score=34.61 Aligned_cols=291 Identities=10% Similarity=0.075 Sum_probs=131.8
Q ss_pred HHHHhhHHHHHhChhch--HHHHHHHHHhcccC--chhHHHHHHHHHHHH---HhhcccCCCccHHHHHHHHHHHHhcCC
Q 002126 511 DVIGSYSKWISAFQTNA--RPLLLFLAAGISEA--VSSNACASALRKICE---DASALIDEPSNLEILMWIGEALEKRHL 583 (962)
Q Consensus 511 ~~ig~ys~wl~~~p~~L--~~vL~~l~~~l~~~--~~~~~Aa~al~~lc~---~c~~~l~~p~~~~~l~~~~~~l~~~~l 583 (962)
++++..+..-..+...+ ..+++.|+.-+.++ .++..|+.||.+|+. .|+..+.....++.|..+...-.....
T Consensus 142 ~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~ 221 (529)
T 3tpo_A 142 WALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL 221 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGS
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHh
Confidence 66666653222222212 24678888877765 489999999999985 355543211234444443321001111
Q ss_pred ChhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHhHHHHHHHHhhhhhcccc
Q 002126 584 PLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHL 663 (962)
Q Consensus 584 ~~~~~~~l~eai~~vi~~lp~~e~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l 663 (962)
.......+..+++.+...-.+... ......++ ..|.+++... ++.. ...++..+..++ .+-
T Consensus 222 ~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~l----p~L~~LL~~~-------~~~v----~~~a~~aL~~l~---~~~ 282 (529)
T 3tpo_A 222 ACGYLRNLTWTLSNLCRNKNPAPP-LDAVEQIL----PTLVRLLHHN-------DPEV----LADSCWAISYLT---DGP 282 (529)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTCCC-HHHHHHHH----HHHHHHTTSS-------CHHH----HHHHHHHHHHHH---SSC
T ss_pred HHHHHHHHHHHHHHHHhcccchhh-HHHHhhHH----HHHHHHhcCC-------cHHH----HHHHHHHHHHhh---hhh
Confidence 223344555566666543222111 11122333 3333444322 1111 122333333333 110
Q ss_pred cccCCCCCCCCchHHH-H-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhh-----HhhHHHHHHHHHHhh
Q 002126 664 PVPLPTNPAGDDPIFA-L-LRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-----VTLLPQVLDCLSTNF 736 (962)
Q Consensus 664 ~~~~~~~~~~~~p~~~-~-~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~-----~p~l~~~~~~l~~~f 736 (962)
. .... + -..+.|.+..++. ..+..+.+.++++++.+...-.... ...++.++..+.
T Consensus 283 ~-----------~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~--- 345 (529)
T 3tpo_A 283 N-----------ERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--- 345 (529)
T ss_dssp H-----------HHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT---
T ss_pred h-----------hhHHHHHhccchHHHHHHhc---CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc---
Confidence 0 0111 1 1234566666654 2567888888888887654211111 112333333221
Q ss_pred hhhcCcchHHHHHHHHHHHhcCCCCccchHHHHHH-HHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHh-hhHH--
Q 002126 737 VSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFE-RFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRT-SRKE-- 812 (962)
Q Consensus 737 ~~~~~~~~~L~l~~~lv~~~g~~~~~~~~l~~l~~-~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~-~p~~-- 812 (962)
+ +....-.-+...+........ .....+.. .+.... +..+. ..++++.......+..+... .+..
T Consensus 346 --~-~~~~i~~~a~~aL~nl~~~~~--~~~~~v~~~g~i~~L-v~lL~-----~~~~~v~~~A~~aL~nl~~~~~~~~~~ 414 (529)
T 3tpo_A 346 --N-PKTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFL-VGVLS-----KADFKTQKAAAWAITNYTSGGTVEQIV 414 (529)
T ss_dssp --C-SSHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHH-HHHHH-----SSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred --C-CCHHHHHHHHHHHHHHhcccH--HHHHHHHhcCcHHHH-HHHhc-----CCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 1 222222222222222221110 11111111 111111 22232 35678888777666666654 2322
Q ss_pred -HHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhh
Q 002126 813 -VLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEEC 854 (962)
Q Consensus 813 -~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~ 854 (962)
+... +.++.++ .-|...++.+...++..+.+++...
T Consensus 415 ~l~~~--g~i~~L~----~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 415 YLVHC--GIIEPLM----NLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHT--TCHHHHH----HGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHC--cCHHHHH----HHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 2222 3455443 3467889999999999999888654
No 54
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=73.23 E-value=66 Score=30.70 Aligned_cols=188 Identities=15% Similarity=0.045 Sum_probs=105.7
Q ss_pred ChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHHHHH-HHHHHHHHhc-CCCHHHHHHHHHHH
Q 002126 38 TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLN-ALLVAAKRFS-SGPPQLLTQICLAL 115 (962)
Q Consensus 38 s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr~-~Ll~~l~~~~-~~~~~v~~kL~~aL 115 (962)
.+..+.....||.++ +.++|.-|+..|.+-... +++.+..+.+ ..+..+...- .++..++..-+.+|
T Consensus 10 ~~~~~~~l~~LL~s~------~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L 78 (210)
T 4db6_A 10 HGSELPQMVQQLNSP------DQQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 78 (210)
T ss_dssp ---CHHHHHHHTTCS------CHHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCC------CHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345567778888654 468999999999876542 3344433332 3444444432 35678888889899
Q ss_pred HHHHhhhc------cCCchHHHHHHHhhcccCCCcchHHHHHHHhhcccccccccccccCCCHHHHHHHHHHHHhhhhHH
Q 002126 116 SALILRAV------EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMV 189 (962)
Q Consensus 116 a~l~~~~~------~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v 189 (962)
+.++.... -..+.++.++..+.+. ++......+..|..+... ....+..+. . ..+
T Consensus 79 ~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~-----------~~~~~~~~~----~--~~~ 139 (210)
T 4db6_A 79 SNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG-----------GNEQIQAVI----D--AGA 139 (210)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS-----------CHHHHHHHH----H--TTH
T ss_pred HHHhcCCcHHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcC-----------CHHHHHHHH----H--cCc
Confidence 98875432 1345677778777652 233334445555554431 111211111 1 123
Q ss_pred HHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC--CcHHHHHHHHHHH
Q 002126 190 VEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVEL 266 (962)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~ei 266 (962)
+..|...+.. ++..++..++.++..-...+. -....+.....++.+.+.+.++ +..+.|+.+|..+
T Consensus 140 i~~L~~ll~~--------~~~~v~~~a~~aL~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 140 LPALVQLLSS--------PNEQILQEALWALSNIASGGN---EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHTTC--------SCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--------CCHHHHHHHHHHHHHHHcCCc---HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3334333333 235688889888888766321 0111234567888888888754 5566777777554
No 55
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=72.22 E-value=77 Score=31.05 Aligned_cols=177 Identities=13% Similarity=0.065 Sum_probs=103.1
Q ss_pred chhHHHHHhHHHHHHHhcCCCCCChHHHHHHH-HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhcc------CCchHH
Q 002126 59 DFEVEFFAAQILKRKIQNEGYYLQSAAKDALL-NALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIE 130 (962)
Q Consensus 59 ~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr-~~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~~~~~~------W~~~i~ 130 (962)
+.++|.-|+..|.+-...+ ++.+..+. ...+..+.... .++..++...+.+|+.++..... -.+.++
T Consensus 15 ~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 89 (252)
T 4hxt_A 15 DSETQKEAARDLAEIASGP-----ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 89 (252)
T ss_dssp CHHHHHHHHHHHHHHHTSC-----HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHhcCC-----cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 3689999999998776643 23333333 23555555433 35578999999999998865321 134677
Q ss_pred HHHHHhhcccCCCcchHHHHHHHhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchh
Q 002126 131 KLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLH 210 (962)
Q Consensus 131 ~li~~~~~~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~ 210 (962)
.++..+.+. ++......+..|..+...- ...+..+.+ ..++..+...+.. ++.
T Consensus 90 ~l~~ll~~~--~~~v~~~a~~~L~~l~~~~-----------~~~~~~~~~------~~~i~~L~~~l~~--------~~~ 142 (252)
T 4hxt_A 90 VLVKLLTST--DSEVQKEAARALANIASGP-----------DEAIKAIVD------AGGVEVLVKLLTS--------TDS 142 (252)
T ss_dssp HHHHHTTCS--SHHHHHHHHHHHHHHTTSC-----------HHHHHHHHH------TTHHHHHHHHTTC--------SCH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHHcCC-----------HHHHHHHHH------CCCHHHHHHHHcC--------CCH
Confidence 777777642 3333445566666555321 111211111 1233333333332 235
Q ss_pred hhHHHHHHHHHHHHHhcccccccchhhhhcchHHHHHHhcCCC--CcHHHHHHHHHHHHhcC
Q 002126 211 DRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRH 270 (962)
Q Consensus 211 ~~~~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eil~~~ 270 (962)
.++..++.++....... .-....+.....++.+.+.|.++ +....|+.++..+....
T Consensus 143 ~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 201 (252)
T 4hxt_A 143 EVQKEAARALANIASGP---DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 201 (252)
T ss_dssp HHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 68888888888765521 10112245577889999998765 55678888888877643
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=69.62 E-value=15 Score=38.22 Aligned_cols=136 Identities=10% Similarity=-0.009 Sum_probs=73.2
Q ss_pred CCchhhhHHHHHHHhhhhccccCCCc----cchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChh-c
Q 002126 452 IPWKEVETKLFALNVVSEVVLQEGQA----FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQT-N 526 (962)
Q Consensus 452 ~~W~~~Ea~Lf~l~~iae~i~~~~~~----~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~-~ 526 (962)
.+-.-.+.++++++.++..-+..... ..++.+++++. +.+... ++..+ ++.|+..+.-....++ +
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~---~~~~~~------v~~~A-~~ALsnl~~~~~~~~~~~ 163 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD---RDACDT------VRVKA-LFAISCLVREQEAGLLQF 163 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH---HCSCHH------HHHHH-HHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc---cCCCHH------HHHHH-HHHHHHHHcCCcHHHHHH
Confidence 44567789999999987643310000 01333444333 232211 33333 4677765431111111 2
Q ss_pred h-HHHHHHHHHhccc--CchhHHHHHHHHHHHHHhhc---ccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhc
Q 002126 527 A-RPLLLFLAAGISE--AVSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (962)
Q Consensus 527 L-~~vL~~l~~~l~~--~~~~~~Aa~al~~lc~~c~~---~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (962)
. ...++.|...+.+ +.++..|+.++.++|..-.. .+.....++.|..+ +... +...+.....+++.++.
T Consensus 164 ~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L---L~~~--d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 164 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL---VRTE--HSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH---HTSC--CSTHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH---HcCC--ChhHHHHHHHHHHHHHh
Confidence 1 1356666666665 45899999999999976221 11111123333333 2222 56788999999999997
Q ss_pred cC
Q 002126 601 SV 602 (962)
Q Consensus 601 ~l 602 (962)
.-
T Consensus 239 ~~ 240 (296)
T 1xqr_A 239 DF 240 (296)
T ss_dssp TC
T ss_pred CC
Confidence 73
No 57
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=69.48 E-value=1.5e+02 Score=33.23 Aligned_cols=293 Identities=12% Similarity=0.055 Sum_probs=152.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhh---cCh--------HHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcC
Q 002126 9 VAQAVHVLNHDTESCNRVAANQWLVQFQ---QTD--------AAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNE 77 (962)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q---~s~--------~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~ 77 (962)
|+..|+.++ +.|++.+.+|-+.+.++= +.| .+-....++|...+ +.++|+-||-.|.+-..
T Consensus 59 i~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~-----~~~lq~~Aa~aL~nias-- 130 (510)
T 3ul1_B 59 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-----CSPIQFESAWALTNIAS-- 130 (510)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT-----CHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC-----CHHHHHHHHHHHHHHhc--
Confidence 677788887 557888888888777752 122 13445667776533 46899999999987553
Q ss_pred CCCCChHHHHHHHHH-HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhhcc------CCchHHHHHHHhhcccCCCc---ch
Q 002126 78 GYYLQSAAKDALLNA-LLVAAKRF-SSGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDN---GN 146 (962)
Q Consensus 78 ~~~l~~e~~~~Lr~~-Ll~~l~~~-~~~~~~v~~kL~~aLa~l~~~~~~------W~~~i~~li~~~~~~~~~~~---~~ 146 (962)
-+.++...+.+. .+..|.+. ..++..|+.+-+.+|..++..... -...+.-++..+........ ..
T Consensus 131 ---~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~ 207 (510)
T 3ul1_B 131 ---GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207 (510)
T ss_dssp ---SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred ---CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHH
Confidence 245555555443 44444443 245678999999999999865331 12334455555543110000 11
Q ss_pred HHHHHHHhhcccccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHh
Q 002126 147 MAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRA 226 (962)
Q Consensus 147 ~~lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~ 226 (962)
......|..+...-. . .... .....++..|...+.. ++..++..+..|+..-...
T Consensus 208 ~~a~~~L~nl~~~~~-----~--~~~~----------~~~~~~lp~L~~LL~~--------~~~~v~~~A~~aL~~L~~~ 262 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKN-----P--APPL----------DAVEQILPTLVRLLHH--------NDPEVLADSCWAISYLTDG 262 (510)
T ss_dssp HHHHHHHHHHHCCCS-----S--CCCH----------HHHHHHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhhccc-----c--hhHH----------HHHHhHHHHHHHHHhc--------CCHHHHHHHHHHHHHHhhc
Confidence 122233333332110 0 0000 0112334444444433 2345677777666543321
Q ss_pred cccccccchhhhhcchHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCChhHHHHh-hhhhhHHhhhhhhhccCcHhHHhh
Q 002126 227 GCFTEISQGSLAAHPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEGLPQALLC-RVPFLKELLLLPALTDGDEKVIGG 303 (962)
Q Consensus 227 ~~~~~~~~~~~~~~~ll~~~~~~L~~~--~~~~~a~~~l~eil~~~~~~~~~l~~-~~~~l~~~~~~~~~~~~d~d~~~~ 303 (962)
. .-....+....+++.+.+.|.++ .+...++.++..+....+.....++. ..+ +.+. ..+.+.+.+..+.
T Consensus 263 ~---~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l---~~L~-~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 263 P---NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL---AVFP-SLLTNPKTNIQKE 335 (510)
T ss_dssp C---HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG---GGCC--CTTCSSHHHHHH
T ss_pred h---hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccch---HHHH-HHhcCCCHHHHHH
Confidence 1 00011234667888888888765 44577888888877655433333321 121 1121 2344556666566
Q ss_pred HHHHHHHHhHhh---hHHHHhcChhHHHHHHHHHhcccCCCCCchhhhhhH
Q 002126 304 LACLMSEIGQAA---PSLIVEASPEALALADALLSCVAFPSEDWEIADSTL 351 (962)
Q Consensus 304 l~~l~~~~~e~~---~~~l~~~~~~~~~ll~~ll~~~~~p~~d~~v~~~t~ 351 (962)
-|..+..++... ...+.+. .++..|+.+...+ +.++...+.
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~~-----g~i~~Lv~lL~~~--~~~v~~~Aa 379 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVNH-----GLVPFLVGVLSKA--DFKTQKEAA 379 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHT-----THHHHHHHHHHSS--CHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHhc-----CCHHHHHHHHcCC--CHHHHHHHH
Confidence 666666654322 2222221 2445555555554 556655443
No 58
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=68.89 E-value=22 Score=33.71 Aligned_cols=118 Identities=13% Similarity=0.089 Sum_probs=75.6
Q ss_pred HHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcc
Q 002126 460 KLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGIS 539 (962)
Q Consensus 460 ~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~ 539 (962)
.-|+++-|+..-|+ . ++.++.=+..+...|. +.. +. +++++|+... ..|+.|..|-|+-++.-++
T Consensus 127 ~~yaLeeIaranP~----l-~~~v~rdi~smltskd-~~D-----kl-~aLnFi~alG---en~~~yv~PfLprL~aLL~ 191 (253)
T 2db0_A 127 VSYALEEIAKANPM----L-MASIVRDFMSMLSSKN-RED-----KL-TALNFIEAMG---ENSFKYVNPFLPRIINLLH 191 (253)
T ss_dssp HHHHHHHHHHHCHH----H-HHHHHHHHHHHTSCSS-HHH-----HH-HHHHHHHTCC---TTTHHHHGGGHHHHHGGGG
T ss_pred HHHHHHHHHHhChH----H-HHHHHHHHHHHhcCCC-hHH-----HH-HHHHHHHHHh---ccCccccCcchHHHHHHHc
Confidence 34666666665442 1 4556654445444443 211 23 3368888887 4789999999999999999
Q ss_pred cCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhc
Q 002126 540 EAV--SSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600 (962)
Q Consensus 540 ~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~ 600 (962)
+.+ ++.+|..++-+++....+ .-+.+....+.+ ..-+......+.||++.++-
T Consensus 192 D~deiVRaSaVEtL~~lA~~npk------lRkii~~kl~e~--~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 192 DGDEIVRASAVEALVHLATLNDK------LRKVVIKRLEEL--NDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CSSHHHHHHHHHHHHHHHTSCHH------HHHHHHHHHHHC--CCSCHHHHHHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 765 889999999999864332 222333333322 23355667889999998863
No 59
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=68.04 E-value=42 Score=42.58 Aligned_cols=64 Identities=3% Similarity=-0.106 Sum_probs=44.9
Q ss_pred CCCchHHHHHHHHHHHHHhhhHHHHh----hchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002126 790 QEPDLVEAYTNFASTFVRTSRKEVLA----ASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (962)
Q Consensus 790 ~~pD~~~~~f~l~~~~l~~~p~~~l~----~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~ 853 (962)
++.|..+.+-+++..+....-..+.. ...+.+..+++..+.....++.++...++.||..++..
T Consensus 314 ~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 314 KHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 35677777777777777543332221 11245778888888888888888899999999988854
No 60
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=67.55 E-value=4.6 Score=39.34 Aligned_cols=139 Identities=15% Similarity=0.028 Sum_probs=73.1
Q ss_pred CCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhChhch--H
Q 002126 451 PIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNA--R 528 (962)
Q Consensus 451 ~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L--~ 528 (962)
+.++...+.++++|+.++..-++.-....-...+..+..+..++... ++..+ +..++..+..-..+.+.+ .
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~------v~~~a-~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ------ILQEA-LWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHH------HHHHH-HHHHHHHTTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHH------HHHHH-HHHHHHHhcCCcHHHHHHHHC
Confidence 34688889999999998754321100000001222222333333222 34444 478887763111111111 1
Q ss_pred HHHHHHHHhcccC--chhHHHHHHHHHHHHHhhc---ccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002126 529 PLLLFLAAGISEA--VSSNACASALRKICEDASA---LIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (962)
Q Consensus 529 ~vL~~l~~~l~~~--~~~~~Aa~al~~lc~~c~~---~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (962)
.+++.++..+.++ .++..|+.++.++|..... .+.....++.|..+.. . -+.+.+...+.+++.+...
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~--~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---S--PNEQILQEALWALSNIASG 168 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---C--SCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc---C--CCHHHHHHHHHHHHHHHcC
Confidence 2566677777754 4899999999999954322 1111113333333322 1 2566788888888888764
No 61
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=57.47 E-value=1.6e+02 Score=29.50 Aligned_cols=145 Identities=9% Similarity=-0.007 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHH-hccCc
Q 002126 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAV-LSASR 494 (962)
Q Consensus 416 fR~~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~-l~~~~ 494 (962)
.|......|.. +|.+..+..+...+ . +.++.....++++++.++.. ... ++.++.++.. +..++
T Consensus 39 vr~~A~~~L~~----~~~~~~~~~L~~~l-~----d~~~~vR~~A~~aL~~l~~~---~~~---~~~l~~~L~~~~~~d~ 103 (280)
T 1oyz_A 39 KRISSARVLQL----RGGQDAVRLAIEFC-S----DKNYIRRDIGAFILGQIKIC---KKC---EDNVFNILNNMALNDK 103 (280)
T ss_dssp HHHHHHHHHHH----HCCHHHHHHHHHHH-T----CSSHHHHHHHHHHHHHSCCC---TTT---HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHc----cCCchHHHHHHHHH-c----CCCHHHHHHHHHHHHHhccc---ccc---chHHHHHHHHHHhcCC
Confidence 45444444433 24444455554444 2 34577778888888877531 111 3555555542 33333
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHH
Q 002126 495 SEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILM 572 (962)
Q Consensus 495 ~~~~~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~ 572 (962)
... +|..+ +..+|.+.. .+|.+-+.+++.+...+.+++ ++..|+.++.++.. +...+.|.
T Consensus 104 ~~~------vr~~a-~~aL~~l~~---~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~ 165 (280)
T 1oyz_A 104 SAC------VRATA-IESTAQRCK---KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLI 165 (280)
T ss_dssp CHH------HHHHH-HHHHHHHHH---HCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHH
T ss_pred CHH------HHHHH-HHHHHHHhc---cCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHH
Confidence 322 45544 478887653 345666778888888888755 88899998887643 22455555
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHH
Q 002126 573 WIGEALEKRHLPLEDEEEVVGAISLI 598 (962)
Q Consensus 573 ~~~~~l~~~~l~~~~~~~l~eai~~v 598 (962)
.... .-+...|.....++|.+
T Consensus 166 ~~l~-----d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 166 NLLK-----DPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHT-----CSSHHHHHHHHHHHHHH
T ss_pred HHHc-----CCCHHHHHHHHHHHHhh
Confidence 4432 22456788888888876
No 62
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=51.80 E-value=2e+02 Score=28.98 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=97.3
Q ss_pred hhHHHHHhHHHHHHHhcCCCCCChHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhhhccCCchHHHHHHHhhc
Q 002126 60 FEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAK-RFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQN 138 (962)
Q Consensus 60 ~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr~~Ll~~l~-~~~~~~~~v~~kL~~aLa~l~~~~~~W~~~i~~li~~~~~ 138 (962)
..-+.=|...|...+.. .++.....-+-++.|+. ++...+..|..+....|..++-.+. .
T Consensus 60 ~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~--------------~ 120 (266)
T 2of3_A 60 FKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIR--------------D 120 (266)
T ss_dssp HHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH--------------h
Confidence 45555577777776653 23444444555678775 4555677777777777777654332 1
Q ss_pred ccCCCcchHHHHHHHhhcccccccccccccCCCHHHHHHHHHHH---Hh--hhhHHHHHHHHhHhhccCCCCCcchhhhH
Q 002126 139 LQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQEL---LS--HTPMVVEFLMQQSDKRFDGGVPVQLHDRN 213 (962)
Q Consensus 139 ~~~~~~~~~~lL~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l---~~--~~~~v~~~l~~~l~~~~~~~~~~~~~~~~ 213 (962)
.+ ..-.-.-...++-.|.|-++|+ .+.-|..+++.+ .. ....|+.++...+.+ .+...+
T Consensus 121 ~~-y~~~~~ea~~~lP~LveKlGd~-------k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ks--------KN~R~R 184 (266)
T 2of3_A 121 TE-TPMSQEEVSAFVPYLLLKTGEA-------KDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKS--------KNARQR 184 (266)
T ss_dssp TT-CCCCHHHHHHHHHHHHHGGGCS-------SHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGC--------SCHHHH
T ss_pred cc-ccchHHHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHcc--------CCHHHH
Confidence 00 0000011223444445555543 223344333332 22 234477777766543 245789
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhcchH---HHHHHhcCCC--CcHHHHHHHHHHHHhcCC
Q 002126 214 RKILRCLLSWVRAGCFTEISQGSLAAHPLL---NFVFNSLQVQ--SSFDVAIEVLVELVGRHE 271 (962)
Q Consensus 214 ~~~l~cl~sWi~~~~~~~~~~~~~~~~~ll---~~~~~~L~~~--~~~~~a~~~l~eil~~~~ 271 (962)
..++.++.+-|.-- +++. ...+ +.+...++|+ +.+++|+.|++++.....
T Consensus 185 ~e~l~~l~~li~~~---G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 185 SECLLVIEYYITNA---GISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHHHHH---CSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc---CCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999998642 2221 2245 7778888866 578999999999876543
No 63
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=51.12 E-value=22 Score=35.37 Aligned_cols=137 Identities=16% Similarity=0.037 Sum_probs=73.6
Q ss_pred CchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhC-hhch-HHH
Q 002126 453 PWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF-QTNA-RPL 530 (962)
Q Consensus 453 ~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~ys~wl~~~-p~~L-~~v 530 (962)
+..-.+.++.+|+.++...++......-...+..+..+..++... ++..+ +.+++..+.--... .... ..+
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~------v~~~a-~~~L~~l~~~~~~~~~~~~~~~~ 139 (252)
T 4db8_A 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ------ILQEA-LWALSNIASGGNEQIQAVIDAGA 139 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH------HHHHH-HHHHHHHTTSCHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHH------HHHHH-HHHHHHhhcCCchHHHHHHHCCC
Confidence 467788899999988764321110000011223333333333322 34444 47888776421111 1111 136
Q ss_pred HHHHHHhcccC--chhHHHHHHHHHHHHHhh---cccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002126 531 LLFLAAGISEA--VSSNACASALRKICEDAS---ALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (962)
Q Consensus 531 L~~l~~~l~~~--~~~~~Aa~al~~lc~~c~---~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (962)
++.+++.+.++ .++..|+.++.++|.... ..+.....++.|..+.. . -+...+...+.+++.+...
T Consensus 140 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~--~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---S--PNEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG---C--SSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC---C--CCHHHHHHHHHHHHHHhcC
Confidence 77788888764 489999999999996332 22211123444444332 1 2566788888888888753
No 64
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=49.17 E-value=2.2e+02 Score=28.68 Aligned_cols=97 Identities=9% Similarity=0.081 Sum_probs=64.5
Q ss_pred CchhhhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhhHHH-HHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHH
Q 002126 343 DWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSV-FSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLV 421 (962)
Q Consensus 343 d~~v~~~t~~FW~~l~e~l~~~~~~~~~~~~~~~~~~~~~-~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~ 421 (962)
+..+...++++-..+.+.+.+.+ ..+.++ ...++..++.|+- |.. ..+|..+.
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~-----------y~~~~~ea~~~lP~LveKlG------------d~k---~~vR~~~r 153 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTE-----------TPMSQEEVSAFVPYLLLKTG------------EAK---DNMRTSVR 153 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-----------CCCCHHHHHHHHHHHHHGGG------------CSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc-----------ccchHHHHHHHHHHHHHHhC------------CCh---HHHHHHHH
Confidence 45677788888777766543211 112222 3456777888882 112 36788888
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhc
Q 002126 422 ELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEV 470 (962)
Q Consensus 422 d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~ 470 (962)
+++..++.+.++..++..+.+.+. +-+|+..|.+|..+.++-+.
T Consensus 154 ~il~~l~~v~~~~~v~~~l~~g~k-----sKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 154 DIVNVLSDVVGPLKMTPMLLDALK-----SKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHGGG-----CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHh
Confidence 888888888777666776666552 34699999999999887543
No 65
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.49 E-value=2.2e+02 Score=26.82 Aligned_cols=178 Identities=17% Similarity=0.077 Sum_probs=99.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHH
Q 002126 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDA 88 (962)
Q Consensus 9 v~~ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~ 88 (962)
+...+..| .++++..|..|-..|.++.. +++......+|..+ +..+|..|+..|...- +++....
T Consensus 21 ~~~L~~~L-~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~~------~~~vr~~a~~aL~~~~-------~~~~~~~ 85 (211)
T 3ltm_A 21 VEMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKDE------DAWVRRAAADALGQIG-------DERAVEP 85 (211)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS------CHHHHHHHHHHHHHHC-------CGGGHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcCC------CHHHHHHHHHHHHhhC-------CHHHHHH
Confidence 34444444 47789999999999999875 67777777888653 3689999999886532 1222222
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCchHHHHHHHhhcccCCCcchHHHHHHHhhcccc-cccc--cc
Q 002126 89 LLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE-VIDS--QA 165 (962)
Q Consensus 89 Lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE-~~~~--~~ 165 (962)
|+..+ ...++.|+...+.+|+.+. .+..++.++..+... ++.........|..+.++ .... +.
T Consensus 86 ----L~~~l---~~~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~ 151 (211)
T 3ltm_A 86 ----LIKAL---KDEDGWVRQSAAVALGQIG-----DERAVEPLIKALKDE--DWFVRIAAAFALGEIGDERAVEPLIKA 151 (211)
T ss_dssp ----HHHHT---TCSSHHHHHHHHHHHHHHC-----CGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred ----HHHHH---cCCCHHHHHHHHHHHHHhC-----cHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33322 2345678777777777653 245666677666431 222222333333333321 0000 00
Q ss_pred cccCCCHHHHHHHHHHHHh-hhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHH
Q 002126 166 SDCNISSAHRSQYGQELLS-HTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWV 224 (962)
Q Consensus 166 ~~~~l~~~~r~~~~~~l~~-~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi 224 (962)
+.. -....|......|.. ..+.++..|...+.. ++..++..+.+++...-
T Consensus 152 l~d-~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--------~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 152 LKD-EDGWVRQSAADALGEIGGERVRAAMEKLAET--------GTGFARKVAVNYLETHK 202 (211)
T ss_dssp TTC-SSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH--------CCHHHHHHHHHHHHC--
T ss_pred HcC-CCHHHHHHHHHHHHHhCchhHHHHHHHHHhC--------CCHHHHHHHHHHHHhcC
Confidence 000 123445555555555 345666777666554 23467888887777543
No 66
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=39.29 E-value=2.4e+02 Score=26.30 Aligned_cols=135 Identities=8% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhhhcCCCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhh
Q 002126 419 NLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEEL 498 (962)
Q Consensus 419 ~~~d~l~~~~~il~~~~~l~~~~~~l~~~~~~~~~W~~~Ea~Lf~l~~iae~i~~~~~~~~l~~i~~~l~~l~~~~~~~~ 498 (962)
.+.........-+|.+..+..+...+ .+.++....+++.+++.+++ +.....+..+..++...
T Consensus 60 ~vr~~a~~~L~~~~~~~~~~~L~~~l-----~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~- 122 (201)
T 3ltj_A 60 WVRRAAADALGQIGDERAVEPLIKAL-----KDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWF- 122 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHT-----TCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHH-
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHH-
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHhChhchHHHHHHHHHhcccCc--hhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHH
Q 002126 499 KGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAV--SSNACASALRKICEDASALIDEPSNLEILMWIGE 576 (962)
Q Consensus 499 ~~~~~v~~~t~~~~ig~ys~wl~~~p~~L~~vL~~l~~~l~~~~--~~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~ 576 (962)
+|..++ ..+|.+.. +.+++.+...+.+++ ++..|+.++.++ ..+...+.|..+..
T Consensus 123 -----vr~~a~-~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~--------~~~~~~~~L~~~l~ 179 (201)
T 3ltj_A 123 -----VRIAAA-FALGEIGD---------ERAVEPLIKALKDEDGWVRQSAADALGEI--------GGERVRAAMEKLAE 179 (201)
T ss_dssp -----HHHHHH-HHHHHHTC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH--------CSHHHHHHHHHHHH
T ss_pred -----HHHHHH-HHHHHhCC---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHh
Q ss_pred HHHhcCCChhhHHHHHHHHHHH
Q 002126 577 ALEKRHLPLEDEEEVVGAISLI 598 (962)
Q Consensus 577 ~l~~~~l~~~~~~~l~eai~~v 598 (962)
. -+...|....++++.+
T Consensus 180 d-----~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 180 T-----GTGFARKVAVNYLETH 196 (201)
T ss_dssp H-----CCHHHHHHHHHHHHHC
T ss_pred C-----CCHHHHHHHHHHHHHH
No 67
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=38.97 E-value=5.6e+02 Score=30.42 Aligned_cols=118 Identities=9% Similarity=0.098 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHHhhhh-----hcCcchHHHHHHHHHH
Q 002126 680 LLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVS-----FQNHECYIRTASVVIE 754 (962)
Q Consensus 680 ~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~~~~l~~~~~p~l~~~~~~l~~~f~~-----~~~~~~~L~l~~~lv~ 754 (962)
+.+.+.|++..- .|.++..++..++.+++....--.....-++|.+++.+....+. +++....|..+..++.
T Consensus 336 fV~~l~p~~~~g---~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r 412 (799)
T 1vsy_4 336 IVEIFLNIISLG---SQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIR 412 (799)
T ss_dssp HHHHHHHHHHHH---HTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHH---hCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 445556665543 48899999999999998855432212234678888877766543 2233344555555554
Q ss_pred HhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHhhh
Q 002126 755 EFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSR 810 (962)
Q Consensus 755 ~~g~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p 810 (962)
..-..+.+...+..++... ++.+. .+||+-...-|.|+..+...-|
T Consensus 413 ~lv~~~~yr~hl~~lL~l~-----LpgID-----~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 413 FIVMDKLYRVHITNVLSML-----VSKLD-----MNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HHTTSTTGGGHHHHHHHHH-----HHTCC-----SSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHhcCcccHHHHHHHHHHH-----hccCC-----cccHHHHHHHHHHHHHHHHhcc
Confidence 4444444555555444321 11111 2445555556666666555433
No 68
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=36.01 E-value=1.1e+02 Score=31.07 Aligned_cols=66 Identities=11% Similarity=0.069 Sum_probs=47.3
Q ss_pred CCCCchHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhh
Q 002126 789 DQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECL 855 (962)
Q Consensus 789 ~~~pD~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~ 855 (962)
.-+|-++.+.+.++.++++.+....... .+.+..++.....++...++.+-.+|.+++..+..+.+
T Consensus 150 ~Knpkv~~~~l~~l~~~l~~fg~~~~~~-k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 150 KKLPKLIAAAANCVYELMAAFGLTNVNV-QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTTTCCH-HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCcCCc-hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 4579999999999999999865433321 13455566666677788888888888888887776544
No 69
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=27.44 E-value=5.1e+02 Score=26.38 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHhhcChH---------HHHHHHH-hhccCCCCCCcchhH
Q 002126 4 DLQIKVAQAVHVLNHD-----------TESCNRVAANQWLVQFQQTDA---------AWEIATS-ILTSDRQSFLTDFEV 62 (962)
Q Consensus 4 ~~~~~v~~ai~~ly~~-----------~d~~~~~~A~~~L~~~Q~s~~---------aW~~~~~-LL~~~~~~~~~~~~v 62 (962)
|..++..+++..|-++ .+.+.|..|-.-|..+-+..+ +|..... +|.++ +.++
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~------~~~v 98 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG------AAGL 98 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS------SHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC------CHHH
Confidence 4567788888888753 122467777777777665432 4555666 77653 3689
Q ss_pred HHHHhHHHHHHHhcCCCCCChHHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 002126 63 EFFAAQILKRKIQNEGYYLQSAAKDALL-----NALLVAAKRFSSGPPQLLTQICLALSALILR 121 (962)
Q Consensus 63 ~ffaA~tL~~ki~~~~~~l~~e~~~~Lr-----~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~ 121 (962)
|-.||.+|.+-... +++.+..+. ..|+..+.. ..+..++++.+-+|+.++..
T Consensus 99 r~~Aa~~Lg~ia~~-----n~~~~~~vv~~g~l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~~~ 155 (296)
T 1xqr_A 99 RWRAAQLIGTCSQN-----VAAIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCLVRE 155 (296)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-----CHHHHHHHHHCCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcC
Confidence 99999999876653 233333222 223333332 22466788888888877643
No 70
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=23.04 E-value=9.7e+02 Score=28.15 Aligned_cols=247 Identities=12% Similarity=0.044 Sum_probs=131.3
Q ss_pred CCCChHHHHHHHHHHHHhhc----------ChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHH
Q 002126 18 HDTESCNRVAANQWLVQFQQ----------TDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKD 87 (962)
Q Consensus 18 ~~~d~~~~~~A~~~L~~~Q~----------s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~ 87 (962)
.+.|+..|..|-..|..+-+ .+.+......+|..+ .+.++|..|+.+|++ +..+ .+.+.
T Consensus 160 ~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~-Ls~~-----~~~~~ 228 (780)
T 2z6g_A 160 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTSGTLHN-LSHH-----REGLL 228 (780)
T ss_dssp HCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHH-HHTS-----HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-----CCHHHHHHHHHHHHH-HhCC-----chhHH
Confidence 36688889999888888765 345666666677643 246899999999998 5543 22233
Q ss_pred HHHH-HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhcc------CCchHHHHHHHhhcccCCCcchHHHHHHHhhcccc
Q 002126 88 ALLN-ALLVAAKRFS-SGPPQLLTQICLALSALILRAVE------HGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEE 159 (962)
Q Consensus 88 ~Lr~-~Ll~~l~~~~-~~~~~v~~kL~~aLa~l~~~~~~------W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE 159 (962)
.+.+ ..+..|..+. .++..++..-+.+|..++..... =...++.++..+.+. +.......+..|..+.-.
T Consensus 229 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La~~ 306 (780)
T 2z6g_A 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYG 306 (780)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcC
Confidence 2222 3445554433 34577888888888888765321 135666777777641 222223334444433311
Q ss_pred cccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHhHhhccCCCCCcchhhhHHHHHHHHHHHHHhcccccccchhhhh
Q 002126 160 VIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAA 239 (962)
Q Consensus 160 ~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~cl~sWi~~~~~~~~~~~~~~~ 239 (962)
..+.|..+.+. ...+.++. .+... ........+..++....... . ....+..
T Consensus 307 -----------~~e~~~~i~~~--~~i~~Lv~----lL~~~-------~~~~~~~~a~~aL~~Ls~~~---~-~~~~i~~ 358 (780)
T 2z6g_A 307 -----------NQESKLIILAS--GGPQALVN----IMRTY-------TYEKLLWTTSRVLKVLSVCS---S-NKPAIVE 358 (780)
T ss_dssp -----------CHHHHHHHHTT--THHHHHHH----HHTTC-------CCHHHHHHHHHHHHHHHTST---T-HHHHHHH
T ss_pred -----------ChHHHHHHHHc--CCHHHHHH----HHhcC-------CHHHHHHHHHHHHHHhhcCh---H-HHHHHHH
Confidence 11111111110 12233333 33322 12234444555555443311 1 1122445
Q ss_pred cchHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCC--hhHHHHhhhhhhHHhhhhhhhccCcHhHHhhHHHHHHHHhH
Q 002126 240 HPLLNFVFNSLQVQ--SSFDVAIEVLVELVGRHEG--LPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQ 313 (962)
Q Consensus 240 ~~ll~~~~~~L~~~--~~~~~a~~~l~eil~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~l~~~~~e 313 (962)
...++.+...|.++ +....|+.++..+.....+ ....+++.++. .+..+|.+.....+..+..++.
T Consensus 359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~--------lL~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ--------LLGSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHH--------HTTCSCHHHHHHHHHHHHHHTS
T ss_pred hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHh
Confidence 66788888888765 3456777777777664432 12333443332 2334566666666666666544
No 71
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=21.62 E-value=5.3e+02 Score=24.53 Aligned_cols=92 Identities=11% Similarity=0.069 Sum_probs=53.7
Q ss_pred chHHHHHHHHHhccc----C-chhHHHHHHHHHHHHHhhcccCCCccHHHH-HHHHHHHHhcCCChhhHHHHHHHHHHHh
Q 002126 526 NARPLLLFLAAGISE----A-VSSNACASALRKICEDASALIDEPSNLEIL-MWIGEALEKRHLPLEDEEEVVGAISLIL 599 (962)
Q Consensus 526 ~L~~vL~~l~~~l~~----~-~~~~~Aa~al~~lc~~c~~~l~~p~~~~~l-~~~~~~l~~~~l~~~~~~~l~eai~~vi 599 (962)
|+...++-+++++-. + .++.-||+.+..||+.+...- +..-+-+ ..+...+.++.-+...+...+.|++.
T Consensus 84 YlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y--~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~-- 159 (196)
T 4atg_A 84 YLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY--KTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI-- 159 (196)
T ss_dssp GHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS--TTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC--chHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH--
Confidence 666666666655532 2 489999999999999998754 2233333 33344544444444445544444443
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHhhhc
Q 002126 600 GSVSNKELKNNLLARLLSSSYEAIGKLID 628 (962)
Q Consensus 600 ~~lp~~e~~~~~l~~ll~p~~~~l~~~~~ 628 (962)
+.. +.+..++-|.+..+.+.+.
T Consensus 160 --lG~-----~~vr~~llP~l~~~~~~~~ 181 (196)
T 4atg_A 160 --LSK-----NVVNTVIREHAEEYKRTIG 181 (196)
T ss_dssp --HCH-----HHHHTHHHHHHHHHHHHTC
T ss_pred --hHH-----HHHHHhhhcCHHHHHHHHH
Confidence 332 3355666677766655443
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.14 E-value=4.1e+02 Score=24.89 Aligned_cols=121 Identities=16% Similarity=0.013 Sum_probs=78.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCcchhHHHHHhHHHHHHHhcCCCCCChHHHHHHHH
Q 002126 12 AVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLN 91 (962)
Q Consensus 12 ai~~ly~~~d~~~~~~A~~~L~~~Q~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~~~~Lr~ 91 (962)
.+..+..++++..|..|-..|.++.. +++......+|..+ +..+|..|+..|..- . +++.. .
T Consensus 85 ~L~~~l~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d~------~~~vr~~a~~aL~~~-~------~~~~~----~ 146 (211)
T 3ltm_A 85 PLIKALKDEDGWVRQSAAVALGQIGD-ERAVEPLIKALKDE------DWFVRIAAAFALGEI-G------DERAV----E 146 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTCS------SHHHHHHHHHHHHHH-C------CGGGH----H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc-HHHHHHHHHHHhCC------CHHHHHHHHHHHHHc-C------CHHHH----H
Confidence 34444567889999999999999865 67788888888653 368999999999754 2 12222 2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCchHHHHHHHhhcccCCCcchHHHHHHHhhccccc
Q 002126 92 ALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEV 160 (962)
Q Consensus 92 ~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~~~W~~~i~~li~~~~~~~~~~~~~~~lL~iL~~l~EE~ 160 (962)
.|...+ ...+..|+...+.+|+.+.- +..+..+...+... ++.......+.|..+...-
T Consensus 147 ~L~~~l---~d~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 147 PLIKAL---KDEDGWVRQSAADALGEIGG-----ERVRAAMEKLAETG--TGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHT---TCSSHHHHHHHHHHHHHHCS-----HHHHHHHHHHHHHC--CHHHHHHHHHHHHC-----
T ss_pred HHHHHH---cCCCHHHHHHHHHHHHHhCc-----hhHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCC
Confidence 233322 23567899999999999852 45666666666652 3445566677777776554
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=21.11 E-value=8.1e+02 Score=26.49 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=45.6
Q ss_pred HHHHHHHHhccc--CchhHHHHHHHHHHH---HHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhcc
Q 002126 529 PLLLFLAAGISE--AVSSNACASALRKIC---EDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601 (962)
Q Consensus 529 ~vL~~l~~~l~~--~~~~~~Aa~al~~lc---~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~ 601 (962)
..++.|+..+.+ +.++..|+.++++|+ .+++..+.....++.|..+... .-+.+.++....+++.+...
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~----~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR----TGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT----CCCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh----CCCHHHHHHHHHHHHHHhcC
Confidence 346666776764 458999999999999 3455544222256666665431 12466778888888888876
No 74
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=20.12 E-value=1.1e+03 Score=27.79 Aligned_cols=58 Identities=10% Similarity=0.009 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHHHHhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhh
Q 002126 793 DLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEE 853 (962)
Q Consensus 793 D~~~~~f~l~~~~l~~~p~~~l~~~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~ 853 (962)
.-+.=++.+++.++++....++... +.+-.++...+. ........+.+++++..++..
T Consensus 631 ~~L~w~l~iL~~~v~~~g~~lL~y~-deL~~il~~~~~--~~k~~~~~~~~~~ll~~lL~s 688 (799)
T 1vsy_4 631 VKLVLYLTALNDVLRNCHESLLEYS-DELITFMKYLYD--NVTNPPLDVITSIVIHSALAT 688 (799)
T ss_dssp HHHHHHHHHHHHHHTTTGGGGGTTH-HHHHHHHHHHHH--SCCCHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHccH-HHHHHHHHHHHH--HhcCcchHHHHHHHHHHHHHH
Confidence 4566789999999999888888653 233444444332 445555568888888888844
Done!