BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002128
(962 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 262 bits (669), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 156/349 (44%), Positives = 213/349 (61%), Gaps = 21/349 (6%)
Query: 33 EEKIVVTVRLRPLNKREQLAKD--QVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGP 90
E + V VR+RPLN RE+ + QV W D+ ++Y+ V SF+FD+VF
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKT--DNNVIYQ------VDGSKSFNFDRVFHG 54
Query: 91 SCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG------ITEKAVVDIYN 144
+ T+ VYEE + SA+ G N TIFAYGQT+SGKTYTM G + +A+ DI+
Sbjct: 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQ 114
Query: 145 HIMNTPERDFTIKISGLEIYNENVRDLL-NSESGRNLKLLDDPEKGTVVEKLVEETANND 203
I P+R+F +++S +EIYNE + DLL ++ + L + +D + V L EE
Sbjct: 115 KIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTS 174
Query: 204 QHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLR-ENSDCVRSF-VASLNFVD 261
+ I+ E R GET +N SSRSH I R+ ++S + E S+C S V+ LN VD
Sbjct: 175 EMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234
Query: 262 LAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHS 321
LAGSERA+QT A G RL+EGC+IN SL L VI+KLS G+ G I YRDSKLTRILQ+S
Sbjct: 235 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNS 294
Query: 322 LGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDK 370
LGGNA+T IICT++P F+++ L FA+ AK + N VN V +D+
Sbjct: 295 LGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 202/370 (54%), Gaps = 45/370 (12%)
Query: 34 EKIVVTVRLRPLNKREQLAKDQ--VAWDCVDDHTIVYKPQ--PHERVAQPSSFSFDKVFG 89
E + V R RPL+++E+ A + + D + P+ P E P +F+FD V+
Sbjct: 21 EALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGE---LPKTFTFDAVYD 77
Query: 90 PSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM---------RGITEKAVV 140
S +Y+E V+ + S L G N T+FAYGQT +GKTYTM RG+ A
Sbjct: 78 ASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFE 137
Query: 141 DIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLVEETA 200
I+ HI + + + ++ S LEIY E +RDLL+ E G+ L+L ++PE G ++ L
Sbjct: 138 HIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSFVT 197
Query: 201 NNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLR--ENSDCVRSFVASLN 258
N + + H++++ R VG T +N+ SSRSH I ++++ + R + D +R V LN
Sbjct: 198 KNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIR--VGKLN 255
Query: 259 FVDLAGSER---ASQTHADGA---------------------RLREGCHINLSLMTLTTV 294
VDLAGSER A A GA R +E INLSL L V
Sbjct: 256 LVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNV 315
Query: 295 IRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRA 354
I L+ G RS HIPYRDSKLTR+LQ SLGGNA+T ++ TL PA +++S +TL FA RA
Sbjct: 316 IAALA-GNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRA 374
Query: 355 KEVTNNAQVN 364
K + N +VN
Sbjct: 375 KNIKNKPRVN 384
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 200/350 (57%), Gaps = 29/350 (8%)
Query: 34 EKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTI------VYKPQ--PHERVAQPSSFSFD 85
E + V VR RP+N +E+ A ++D V D + V P+ HE P +F+FD
Sbjct: 21 ESVRVVVRCRPMNGKEKAA----SYDKVVDVDVKLGQVSVKNPKGTAHE---MPKTFTFD 73
Query: 86 KVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM---------RGITE 136
V+ + +Y+E + + S L G N TIFAYGQT +GKTYTM RG+
Sbjct: 74 AVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIP 133
Query: 137 KAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLV 196
+ I+ HI + + + ++ S LEIY E +RDLL+ + + L+L + P+ G V+ L
Sbjct: 134 NSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLS 193
Query: 197 EETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQST--LRENSDCVRSFV 254
+ + + H++++ R VG T +N+ SSRSH I ++I+ + + + +R V
Sbjct: 194 SFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIR--V 251
Query: 255 ASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKL 314
LN VDLAGSER ++T A G RL+E INLSL L VI L GK S HIPYRDSKL
Sbjct: 252 GKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGK-STHIPYRDSKL 310
Query: 315 TRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVN 364
TR+LQ SLGGNA+T ++ + PA + E++ TL +A RAK + N +VN
Sbjct: 311 TRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVN 360
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/353 (39%), Positives = 202/353 (57%), Gaps = 20/353 (5%)
Query: 34 EKIVVTVRLRPLNKRE--QLAKDQVAWDCVDDHTIVYKPQPHERVAQ----PSSFSFDKV 87
+ I V VR RPLN RE + A + + D IV P+ + Q P +F+FD V
Sbjct: 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAV 63
Query: 88 FGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEK--AVVDIYNH 145
+ + +++ K + + L G N+TIFAYGQT +GKT+TM G E+ A+ + + H
Sbjct: 64 YDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKH 123
Query: 146 IMN-----TPERDFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLVEETA 200
+ + + ++F + S LE+YNE +RDL+ + + L L +D +G V+ L
Sbjct: 124 LFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNT--KLPLKEDKTRGIYVDGLSMHRV 181
Query: 201 NNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQ-STLRENSDCVRSFVASLNF 259
L L+ A R V T +NDTSSRSH I + I+ S + EN + +R V LN
Sbjct: 182 TTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIR--VGKLNL 239
Query: 260 VDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQ 319
VDLAGSER S+T A G L EG INLSL L VI KL G + HIPYRDSKLTR+LQ
Sbjct: 240 VDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG--ATHIPYRDSKLTRLLQ 297
Query: 320 HSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQL 372
SLGGN++T + +SPA ++++++ +TL +A RAK++ N ++N D Q+
Sbjct: 298 DSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 199/367 (54%), Gaps = 37/367 (10%)
Query: 31 PREEKIVVTVRLRPLNKREQLAK--------DQVAWDCVDDHTIVYKPQPHERVAQPSSF 82
P E+ I V R RPLN E+ A + V +C+ VY
Sbjct: 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVY-------------- 53
Query: 83 SFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM---------RG 133
FDKVF P+ E VY E K++ L G N TIFAYGQTSSGKT+TM +G
Sbjct: 54 LFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQG 113
Query: 134 ITEKAVVDIYNHIMNTP-ERDFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVV 192
I + V DI+NHI +F IK+S EIY + +RDLL+ S NL + +D + V
Sbjct: 114 IIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDV-SKVNLSVHEDKNRVPYV 172
Query: 193 EKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRS 252
+ E ++ + + +I ++ R + T +N+ SSRSH + ++++ +EN + +
Sbjct: 173 KGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVK---QENLENQKK 229
Query: 253 FVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDS 312
L VDLAGSE+ S+T A+G L E +IN SL L VI L+ G ++ HIPYRDS
Sbjct: 230 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKT-HIPYRDS 288
Query: 313 KLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQL 372
KLTRILQ SLGGNART I+ SPA + ++++TL F RAK V N VN ++ ++
Sbjct: 289 KLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEW 348
Query: 373 VKHLQKE 379
+ +KE
Sbjct: 349 KRRYEKE 355
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 205/371 (55%), Gaps = 35/371 (9%)
Query: 23 ASTP-GGPKPREEK---IVVTVRLRPLN--KREQLAKDQVAWDCVDDHTIVYKPQPHERV 76
AS P K +EEK I V VR+RP N +R+ A V D V V ++
Sbjct: 2 ASQPNSSAKKKEEKGKNIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKS 61
Query: 77 AQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG--- 133
++ +++FD VFG S VY V + +MG NATIFAYGQT +GKT+TM G
Sbjct: 62 SR-KTYTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERS 120
Query: 134 --------------ITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN--SESG 177
I + + I+ + + +F++K+S LEIYNE + DLLN S+
Sbjct: 121 PNEEYCWEEDPLAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVS 179
Query: 178 RNLKLLDDP--EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQII 235
L++ DDP ++G +++ L E T +N + ++ A+R T +N SSRSH +
Sbjct: 180 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 236 RLSI--QSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTT 293
++I + T + + V+ + LN VDLAGSE ++ A R RE +IN SL+TL
Sbjct: 240 SVTIHMKETTIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGR 297
Query: 294 VIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATR 353
VI L +R+ H+PYR+SKLTRILQ SLGG RT+II T+SPA + E++ +TL +A R
Sbjct: 298 VITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
Query: 354 AKEVTNNAQVN 364
AK + N +VN
Sbjct: 356 AKNILNKPEVN 366
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 206 bits (524), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 191/351 (54%), Gaps = 25/351 (7%)
Query: 31 PREEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGP 90
P E I V R RPLN+ E D+ + T++ +P ++FD+VF
Sbjct: 4 PAECNIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKP---------YAFDRVFQS 54
Query: 91 SCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG---------ITEKAVVD 141
S E VY + K + L G N TIFAYGQTSSGK +TM G I + V D
Sbjct: 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQD 114
Query: 142 IYNHIMNTPER-DFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLVEETA 200
I+N+I + E +F IK+S EIY + +RDLL+ S NL + +D + V+ E
Sbjct: 115 IFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDV-SKTNLSVHEDKNRVPYVKGCTERFV 173
Query: 201 NNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFV 260
+ + I ++ R V T +N+ SSRSH I ++++ +EN+ + L V
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK---QENTQTEQKLSGKLYLV 230
Query: 261 DLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQH 320
DLAGSE+ S+T A+GA L E +IN SL L VI L+ G S ++PYRDSK+TRILQ
Sbjct: 231 DLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG--STYVPYRDSKMTRILQD 288
Query: 321 SLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQ 371
SLGGN RT I+ SP+ + ++++TL F RAK + N VN+ ++ +Q
Sbjct: 289 SLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELTAEQ 339
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 206 bits (524), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 134/349 (38%), Positives = 191/349 (54%), Gaps = 25/349 (7%)
Query: 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSC 92
E I V R RPLN+ E D+ + T+V +P ++FD+VF S
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP---------YAFDRVFQSST 56
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG---------ITEKAVVDIY 143
E VY + K + L G N TIFAYGQTSSGKT+TM G I + V DI+
Sbjct: 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIF 116
Query: 144 NHIMNTPER-DFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLVEETANN 202
N+I + E +F IK+S EIY + +RDLL+ S NL + +D + V+ E +
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDV-SKTNLSVHEDKNRVPYVKGCTERFVCS 175
Query: 203 DQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDL 262
+ I ++ R V T +N+ SSRSH I ++++ +EN+ + L VDL
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK---QENTQTEQKLSGKLYLVDL 232
Query: 263 AGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSL 322
AGSE+ S+T A+GA L E +IN SL L VI L+ G S ++PYRDSK+TRILQ SL
Sbjct: 233 AGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG--STYVPYRDSKMTRILQDSL 290
Query: 323 GGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQ 371
GGN RT I+ SP+ + ++++TL F RAK + N VN+ ++ +Q
Sbjct: 291 GGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELTAEQ 339
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 202 bits (514), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 203/371 (54%), Gaps = 35/371 (9%)
Query: 23 ASTP-GGPKPREEK---IVVTVRLRPLN--KREQLAKDQVAWDCVDDHTIVYKPQPHERV 76
AS P K +EEK I V VR RP N +R+ A V D V V ++
Sbjct: 2 ASQPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS 61
Query: 77 AQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG--- 133
++ +++FD VFG S VY V + +MG N TIFAYGQT +GKT+TM G
Sbjct: 62 SR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERS 120
Query: 134 --------------ITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN--SESG 177
I + + I+ + + +F++K+S LEIYNE + DLLN S+
Sbjct: 121 PNEEYTWEEVPLAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVS 179
Query: 178 RNLKLLDDP--EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQII 235
L++ DDP ++G +++ L E T +N + ++ A+R T +N SSRSH +
Sbjct: 180 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 236 RLSI--QSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTT 293
++I + T + + V+ + LN VDLAGSE ++ A R RE +IN SL+TL
Sbjct: 240 SVTIHMKETTIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGR 297
Query: 294 VIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATR 353
VI L +R+ H+PYR+SKLTRILQ SLGG RT+II T+SPA + E++ +TL +A R
Sbjct: 298 VITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
Query: 354 AKEVTNNAQVN 364
AK + N +VN
Sbjct: 356 AKNILNKPEVN 366
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 202 bits (514), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 203/371 (54%), Gaps = 35/371 (9%)
Query: 23 ASTP-GGPKPREEK---IVVTVRLRPLN--KREQLAKDQVAWDCVDDHTIVYKPQPHERV 76
AS P K +EEK I V VR RP N +R+ A V D V V ++
Sbjct: 2 ASQPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS 61
Query: 77 AQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG--- 133
++ +++FD VFG S VY V + +MG N TIFAYGQT +GKT+TM G
Sbjct: 62 SR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERS 120
Query: 134 --------------ITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN--SESG 177
I + + I+ + + +F++K+S LEIYNE + DLLN S+
Sbjct: 121 PNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVS 179
Query: 178 RNLKLLDDP--EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQII 235
L++ DDP ++G +++ L E T +N + ++ A+R T +N SSRSH +
Sbjct: 180 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 236 RLSI--QSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTT 293
++I + T + + V+ + LN VDLAGSE ++ A R RE +IN SL+TL
Sbjct: 240 SVTIHMKETTIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGR 297
Query: 294 VIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATR 353
VI L +R+ H+PYR+SKLTRILQ SLGG RT+II T+SPA + E++ +TL +A R
Sbjct: 298 VITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
Query: 354 AKEVTNNAQVN 364
AK + N +VN
Sbjct: 356 AKNILNKPEVN 366
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 202 bits (513), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 203/371 (54%), Gaps = 35/371 (9%)
Query: 23 ASTP-GGPKPREEK---IVVTVRLRPLN--KREQLAKDQVAWDCVDDHTIVYKPQPHERV 76
AS P K +EEK I V VR RP N +R+ A V D V V ++
Sbjct: 2 ASQPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS 61
Query: 77 AQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG--- 133
++ +++FD VFG S VY V + +MG N TIFAYGQT +GKT+TM G
Sbjct: 62 SR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERS 120
Query: 134 --------------ITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN--SESG 177
I + + I+ + + +F++K+S LEIYNE + DLLN S+
Sbjct: 121 PNEEYTWEEDPLDGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVS 179
Query: 178 RNLKLLDDP--EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQII 235
L++ DDP ++G +++ L E T +N + ++ A+R T +N SSRSH +
Sbjct: 180 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 236 RLSI--QSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTT 293
++I + T + + V+ + LN VDLAGSE ++ A R RE +IN SL+TL
Sbjct: 240 SVTIHMKETTIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGR 297
Query: 294 VIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATR 353
VI L +R+ H+PYR+SKLTRILQ SLGG RT+II T+SPA + E++ +TL +A R
Sbjct: 298 VITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
Query: 354 AKEVTNNAQVN 364
AK + N +VN
Sbjct: 356 AKNILNKPEVN 366
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 202 bits (513), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 203/371 (54%), Gaps = 35/371 (9%)
Query: 23 ASTP-GGPKPREEK---IVVTVRLRPLN--KREQLAKDQVAWDCVDDHTIVYKPQPHERV 76
AS P K +EEK I V VR RP N +R+ A V D V V ++
Sbjct: 1 ASQPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS 60
Query: 77 AQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG--- 133
++ +++FD VFG S VY V + +MG N TIFAYGQT +GKT+TM G
Sbjct: 61 SR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERS 119
Query: 134 --------------ITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN--SESG 177
I + + I+ + + +F++K+S LEIYNE + DLLN S+
Sbjct: 120 PNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVS 178
Query: 178 RNLKLLDDP--EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQII 235
L++ DDP ++G +++ L E T +N + ++ A+R T +N SSRSH +
Sbjct: 179 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 238
Query: 236 RLSI--QSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTT 293
++I + T + + V+ + LN VDLAGSE ++ A R RE +IN SL+TL
Sbjct: 239 SVTIHMKETTIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGR 296
Query: 294 VIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATR 353
VI L +R+ H+PYR+SKLTRILQ SLGG RT+II T+SPA + E++ +TL +A R
Sbjct: 297 VITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 354
Query: 354 AKEVTNNAQVN 364
AK + N +VN
Sbjct: 355 AKNILNKPEVN 365
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 202 bits (513), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 203/371 (54%), Gaps = 35/371 (9%)
Query: 23 ASTP-GGPKPREEK---IVVTVRLRPLN--KREQLAKDQVAWDCVDDHTIVYKPQPHERV 76
AS P K +EEK I V VR RP N +R+ A V D V V ++
Sbjct: 4 ASQPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS 63
Query: 77 AQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG--- 133
++ +++FD VFG S VY V + +MG N TIFAYGQT +GKT+TM G
Sbjct: 64 SR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERS 122
Query: 134 --------------ITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN--SESG 177
I + + I+ + + +F++K+S LEIYNE + DLLN S+
Sbjct: 123 PNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVS 181
Query: 178 RNLKLLDDP--EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQII 235
L++ DDP ++G +++ L E T +N + ++ A+R T +N SSRSH +
Sbjct: 182 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 241
Query: 236 RLSI--QSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTT 293
++I + T + + V+ + LN VDLAGSE ++ A R RE +IN SL+TL
Sbjct: 242 SVTIHMKETTIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGR 299
Query: 294 VIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATR 353
VI L +R+ H+PYR+SKLTRILQ SLGG RT+II T+SPA + E++ +TL +A R
Sbjct: 300 VITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 357
Query: 354 AKEVTNNAQVN 364
AK + N +VN
Sbjct: 358 AKNILNKPEVN 368
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 202 bits (513), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 203/371 (54%), Gaps = 35/371 (9%)
Query: 23 ASTP-GGPKPREEK---IVVTVRLRPLN--KREQLAKDQVAWDCVDDHTIVYKPQPHERV 76
AS P K +EEK I V VR RP N +R+ A V D V V ++
Sbjct: 2 ASQPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKS 61
Query: 77 AQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG--- 133
++ +++FD VFG S VY V + +MG N TIFAYGQT +GKT+TM G
Sbjct: 62 SR-KTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERS 120
Query: 134 --------------ITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN--SESG 177
I + + I+ + + +F++K+S LEIYNE + DLLN S+
Sbjct: 121 PNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVS 179
Query: 178 RNLKLLDDP--EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQII 235
L++ DDP ++G +++ L E T +N + ++ A+R T +N SSRSH +
Sbjct: 180 ERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVF 239
Query: 236 RLSI--QSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTT 293
++I + T + + V+ + LN VDLAGSE ++ A R RE +IN SL+TL
Sbjct: 240 SVTIHMKETTIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGR 297
Query: 294 VIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATR 353
VI L +R+ H+PYR+SKLTRILQ SLGG RT+II T+SPA + E++ +TL +A R
Sbjct: 298 VITALV--ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 355
Query: 354 AKEVTNNAQVN 364
AK + N +VN
Sbjct: 356 AKNILNKPEVN 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 200/363 (55%), Gaps = 34/363 (9%)
Query: 30 KPREEK---IVVTVRLRPLN--KREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSF 84
K +EEK I V VR RP N +R+ A V D V V ++ ++ +++F
Sbjct: 1 KKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSR-KTYTF 59
Query: 85 DKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG----------- 133
D VFG S VY V + +MG N TIFAYGQT +GKT+TM G
Sbjct: 60 DMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWE 119
Query: 134 ------ITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN--SESGRNLKLLDD 185
I + + I+ + + +F++K+S LEIYNE + DLLN S+ L++ DD
Sbjct: 120 EDPLAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 178
Query: 186 P--EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSI--QS 241
P ++G +++ L E T +N + ++ A+R T +N SSRSH + ++I +
Sbjct: 179 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 238
Query: 242 TLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVG 301
T + + V+ + LN VDLAGSE ++ A R RE +IN SL+TL VI L
Sbjct: 239 TTIDGEELVK--IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV-- 294
Query: 302 KRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNA 361
+R+ H+PYR+SKLTRILQ SLGG RT+II T+SPA + E++ +TL +A RAK + N
Sbjct: 295 ERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 354
Query: 362 QVN 364
+VN
Sbjct: 355 EVN 357
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 183/335 (54%), Gaps = 25/335 (7%)
Query: 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSC 92
E I V R RPLN+ E D+ + T+V +P ++FD+VF S
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP---------YAFDRVFQSST 56
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG---------ITEKAVVDIY 143
E VY + K + L G N TIFAYGQTSSGKT+TM G I + V DI+
Sbjct: 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIF 116
Query: 144 NHIMNTPER-DFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLVEETANN 202
N+I + E +F IK+S EIY + +RDLL+ S NL + +D + V+ E +
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDV-SKTNLSVHEDKNRVPYVKGCTERFVCS 175
Query: 203 DQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDL 262
+ I ++ R V T +N+ SSRSH I ++++ +EN+ + L VDL
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK---QENTQTEQKLSGKLYLVDL 232
Query: 263 AGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSL 322
AGSE+ S+T A+GA L E +IN SL L VI L+ G S ++PYRDSK+TRILQ SL
Sbjct: 233 AGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG--STYVPYRDSKMTRILQDSL 290
Query: 323 GGNARTAIICTLSPALSHFEQSRNTLFFATRAKEV 357
GGN RT I+ SP+ + ++++TL F RAK +
Sbjct: 291 GGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/356 (37%), Positives = 195/356 (54%), Gaps = 25/356 (7%)
Query: 36 IVVTVRLRPLNKREQLAKDQ--VAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCL 93
I V R RP N+ E + Q V + D T+ + AQ SF+FD+VF SC
Sbjct: 8 IKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV------DSKEAQ-GSFTFDRVFDMSCK 60
Query: 94 TETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM----------RGITEKAVVDIY 143
+++ +K L G N T+FAYGQT +GK+YTM RG+ + V I+
Sbjct: 61 QSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIF 120
Query: 144 NHIMNTPER-DFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLVEETANN 202
I+++ ++T+++S +EIY E +RDLL ++ NL + ++ +G V+ L+E ++
Sbjct: 121 TSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN-DNLPVHEEKNRGVYVKGLLEIYVSS 179
Query: 203 DQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDL 262
Q + ++ R V T +N SSRSH I ++I ++N + + L VDL
Sbjct: 180 VQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITIT---QKNVETGSAKSGQLFLVDL 236
Query: 263 AGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSL 322
AGSE+ +T A G L E IN SL L VI L+ GK S H+PYRDSKLTRILQ SL
Sbjct: 237 AGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSS-HVPYRDSKLTRILQESL 295
Query: 323 GGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQK 378
GGN+RT +I SP+ + ++ +TL F RAK + N A+VN +S +L + L K
Sbjct: 296 GGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQMLAK 351
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 195 bits (496), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 135/378 (35%), Positives = 201/378 (53%), Gaps = 47/378 (12%)
Query: 22 PASTPGGPKPREEKIVVTVRLRPLNKREQLAKDQVAWDCV-----DDHTIVYKPQPHERV 76
P + PG + V VR+RP N RE +++D C+ TIV QP E
Sbjct: 14 PINMPGA------SVKVAVRVRPFNSRE-MSRDS---KCIIQMSGSTTTIVNPKQPKE-- 61
Query: 77 AQPSSFSFDKVFGPSCLTET--------VYEEGVKNVALSALMGINATIFAYGQTSSGKT 128
P SFSFD + E VY + + + A G N IFAYGQT +GK+
Sbjct: 62 -TPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 120
Query: 129 YTMRGITEK---AVV-----DIYNHIMNTPERD--FTIKISGLEIYNENVRDLLNSESGR 178
YTM G EK ++ D+++ I +T + +++++S +EIY E VRDLLN ++
Sbjct: 121 YTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKG 180
Query: 179 NLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLS 238
NL++ + P G VE L + + ++ L+ R V T +N+TSSRSH + +
Sbjct: 181 NLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNII 240
Query: 239 I-QSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRK 297
Q ++ V+ ++ VDLAGSERA T A G RL+EG +IN SL TL VI
Sbjct: 241 FTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISA 300
Query: 298 LS----------VGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNT 347
L+ K++ IPYRDS LT +L+ +LGGN+RTA++ LSPA +++++ +T
Sbjct: 301 LAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLST 360
Query: 348 LFFATRAKEVTNNAQVNM 365
L +A RAK++ N VN+
Sbjct: 361 LRYADRAKQIRNTVSVNL 378
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 192/349 (55%), Gaps = 31/349 (8%)
Query: 36 IVVTVRLRPLN--KREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCL 93
I V VR RP N +R+ A V D V V ++ ++ +++FD VFG S
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSR-KTYTFDMVFGASTK 62
Query: 94 TETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG-----------------ITE 136
VY V + +MG N TIFAYGQT +GKT+TM G I
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 137 KAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN--SESGRNLKLLDDP--EKGTVV 192
+ + I+ + + +F++K+S LEIYNE + DLLN S+ L++ DDP ++G ++
Sbjct: 123 RTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 181
Query: 193 EKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSI--QSTLRENSDCV 250
+ L E T +N + ++ A+R T +N SSRSH + ++I + T + + V
Sbjct: 182 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 241
Query: 251 RSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYR 310
+ + LN VDLAGSE ++ A R RE +IN SL+TL VI L +R+ H+PYR
Sbjct: 242 K--IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV--ERTPHVPYR 297
Query: 311 DSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTN 359
+SKLTRILQ SLGG RT+II T+SPA + E++ +TL +A RAK + N
Sbjct: 298 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 346
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/359 (36%), Positives = 199/359 (55%), Gaps = 33/359 (9%)
Query: 30 KPREEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFG 89
K + I V VR+RPLN RE+ + D V +V + ++ + F+FD+ FG
Sbjct: 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTK--KFTFDRSFG 76
Query: 90 PSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG---------------- 133
P VY V + L G N T+FAYGQT +GKT+TM G
Sbjct: 77 PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDI 136
Query: 134 -ITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRNLKLLDDP-EKGTV 191
I +A+ +++ + E ++T++IS LE+YNE + DLL+++ +++ DD +KG+V
Sbjct: 137 GIIPRALSHLFDE-LRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSV 195
Query: 192 VEKLVEET-ANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENS--- 247
+ + +EE ++ + L+ + +R+ T +N SSRSH + SI +REN
Sbjct: 196 IIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTV--FSIVVHIRENGIEG 253
Query: 248 -DCVRSFVASLNFVDLAGSERASQT-HADGARLREGCHINLSLMTLTTVIRKLSVGKRSG 305
D ++ + LN VDLAGSE S+ + G R+RE +IN SL+TL VI L R+
Sbjct: 254 EDMLK--IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALV--DRAP 309
Query: 306 HIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVN 364
H+PYR+SKLTR+LQ SLGG +T+II T+SP E++ +TL +A RAK + N +VN
Sbjct: 310 HVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 128/350 (36%), Positives = 195/350 (55%), Gaps = 32/350 (9%)
Query: 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKP-----QPHERVAQPSSFSFDKVFG 89
K+ V VR+RP+N+RE + D VD + ++ P + QP F++D F
Sbjct: 2 KVKVAVRIRPMNRRETDLHTKCVVD-VDANKVILNPVNTNLSKGDARGQPKVFAYDHCFW 60
Query: 90 PSCLTETVYEEGV----------KNVALSALMGINATIFAYGQTSSGKTYTMRGITE--- 136
+ E+V E+ +N+ +A G NA IFAYGQT SGK+YTM G +
Sbjct: 61 S--MDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPG 118
Query: 137 ---KAVVDIYNHIMN--TPERDFTIKISGLEIYNENVRDLLNSESGR-NLKLLDDPEKGT 190
+ ++ E+ F +++S +EIYNE VRDLL+ + R LK+ + G
Sbjct: 119 LIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGP 178
Query: 191 VVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRE-NSDC 249
V+ L + + + + L+S R V T +N+ SSRSH + ++++ TL + S
Sbjct: 179 YVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGT 238
Query: 250 VRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKL---SVGK-RSG 305
V L+ VDLAGSERA++T A G RL+EG +IN SL TL VI L S GK ++
Sbjct: 239 SGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNK 298
Query: 306 HIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAK 355
+PYRDS LT +L+ SLGGN++TA++ T+SPA +++++ +TL +A RAK
Sbjct: 299 FVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 192 bits (488), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 196/363 (53%), Gaps = 41/363 (11%)
Query: 36 IVVTVRLRPLNKREQLAKDQVAWDCV-----DDHTIVYKPQPHERVAQPSSFSFDKVFGP 90
+ V VR+RP N RE +++D C+ TIV QP E P SFSFD +
Sbjct: 6 VKVAVRVRPFNSRE-MSRDS---KCIIQMSGSTTTIVNPKQPKE---TPKSFSFDYSYWS 58
Query: 91 SCLTET--------VYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEK---AV 139
E VY + + + A G N IFAYGQT +GK+YTM G EK +
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 140 V-----DIYNHIMNTPERD--FTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVV 192
+ D+++ I +T + +++++S +EIY E VRDLLN ++ NL++ + P G V
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 193 EKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSI-QSTLRENSDCVR 251
E L + + ++ L+ R V T +N+TSSRSH + + Q ++
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 238
Query: 252 SFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLS----------VG 301
V+ ++ VDLAGSERA T A G RL+EG +IN SL TL VI L+
Sbjct: 239 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKK 298
Query: 302 KRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNA 361
K++ IPYRDS LT +L+ +LGGN+RTA++ LSPA +++++ +TL +A RAK++ N
Sbjct: 299 KKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 358
Query: 362 QVN 364
VN
Sbjct: 359 SVN 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 196/363 (53%), Gaps = 41/363 (11%)
Query: 36 IVVTVRLRPLNKREQLAKDQVAWDCV-----DDHTIVYKPQPHERVAQPSSFSFDKVFGP 90
+ V VR+RP N RE +++D C+ TIV QP E P SFSFD +
Sbjct: 6 VKVAVRVRPFNSRE-MSRDS---KCIIQMSGSTTTIVNPKQPKE---TPKSFSFDYSYWS 58
Query: 91 SCLTET--------VYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEK---AV 139
E VY + + + A G N IFAYGQT +GK+YTM G EK +
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 140 V-----DIYNHIMNTPERD--FTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVV 192
+ D+++ I +T + +++++S +EIY E VRDLLN ++ NL++ + P G V
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 193 EKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSI-QSTLRENSDCVR 251
E L + + ++ L+ R V T +N+TSSRSH + + Q ++
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 238
Query: 252 SFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLS----------VG 301
V+ ++ VDLAGSERA T A G RL+EG +IN SL TL VI L+
Sbjct: 239 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKK 298
Query: 302 KRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNA 361
K++ IPYRDS LT +L+ +LGGN+RTA++ LSPA +++++ +TL +A RAK++ N
Sbjct: 299 KKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 358
Query: 362 QVN 364
VN
Sbjct: 359 SVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 196/363 (53%), Gaps = 41/363 (11%)
Query: 36 IVVTVRLRPLNKREQLAKDQVAWDCV-----DDHTIVYKPQPHERVAQPSSFSFDKVFGP 90
+ V VR+RP N RE +++D C+ TIV QP E P SFSFD +
Sbjct: 6 VKVAVRVRPFNSRE-MSRDS---KCIIQMSGSTTTIVNPKQPKE---TPKSFSFDYSYWS 58
Query: 91 SCLTET--------VYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEK---AV 139
E VY + + + A G N IFAYGQT +GK+YTM G EK +
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 140 V-----DIYNHIMNTPERD--FTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVV 192
+ D+++ I +T + +++++S +EIY E VRDLLN ++ NL++ + P G V
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 193 EKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSI-QSTLRENSDCVR 251
E L + + ++ L+ R V T +N+TSSRSH + + Q ++
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 238
Query: 252 SFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLS----------VG 301
V+ ++ VDLAGSERA T A G RL+EG +IN SL TL VI L+
Sbjct: 239 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKK 298
Query: 302 KRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNA 361
K++ IPYRDS LT +L+ +LGGN+RTA++ LSPA +++++ +TL +A RAK++ N
Sbjct: 299 KKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 358
Query: 362 QVN 364
VN
Sbjct: 359 SVN 361
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 189 bits (480), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 188/351 (53%), Gaps = 32/351 (9%)
Query: 27 GGPKPREEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDK 86
G P E + V +R+RPL +E L Q C+ V + + F F
Sbjct: 4 GLPGAEEAPVRVALRVRPLLPKELLHGHQ---SCLQ----VEPGLGRVTLGRDRHFGFHV 56
Query: 87 VFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM------------RGI 134
V E VY+ V+ + + G NAT+FAYGQT SGKTYTM +GI
Sbjct: 57 VLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGI 116
Query: 135 TEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN-SESGRNLKLLDDPEKGTVVE 193
+A+ + + I D + +S LE+Y E RDLL + R+++L +D E+G VV
Sbjct: 117 VPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRED-ERGNVVL 175
Query: 194 KLVEETANNDQHLRHLISICE---AQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCV 250
V+E + + L ++S+ E A R G T LN SSRSH + ++++ R S
Sbjct: 176 CGVKEV--DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLP 233
Query: 251 RS-----FVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSG 305
R V+ +FVDLAGSER +T + G RL+E IN SL+ L VI L +R G
Sbjct: 234 RPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRG 293
Query: 306 -HIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAK 355
HIPYRDSK+TRIL+ SLGGNA+T +I +SP+ S F+++ NTL +A+RA+
Sbjct: 294 SHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/344 (35%), Positives = 181/344 (52%), Gaps = 26/344 (7%)
Query: 38 VTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHE----------------RVAQPSS 81
V VR+RP N +E+ A VD H +V+ P+ E + +
Sbjct: 14 VVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLK 73
Query: 82 FSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEK---- 137
F FD VF + V+E K + S L G N T+ AYG T +GKT+TM G ++
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVM 133
Query: 138 --AVVDIYNHIMNTPERDF-TIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEK 194
++ +Y + E + +S LE+YNE +RDLL SG L + +D +KG VV
Sbjct: 134 YLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGP-LAVREDTQKGVVVHG 191
Query: 195 LVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFV 254
L + + + HL+ R T +N TSSRSH + ++ ++ + S +
Sbjct: 192 LTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRI 251
Query: 255 ASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSG-HIPYRDSK 313
A ++ +DLAGSERAS + A G R EG +IN SL+ L VI L+ KR HIPYR+SK
Sbjct: 252 AKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSK 311
Query: 314 LTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEV 357
LTR+L+ SLGGN +T +I +SP+ ++ + NTL +A RAK++
Sbjct: 312 LTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 186 bits (471), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 135/394 (34%), Positives = 220/394 (55%), Gaps = 30/394 (7%)
Query: 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLT 94
KI V R+RPLN++E +++ VD+ T+ + P ++ Q +D+VF
Sbjct: 14 KIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEH-PWKDDKRKQ---HIYDRVFDMRASQ 69
Query: 95 ETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG------ITEKAVVDIYNHIMN 148
+ ++E+ K + SA+ G N IFAYGQT SGKT+T+ G +T +A +++N +
Sbjct: 70 DDIFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNILKR 128
Query: 149 TPER-DFTIKISGLEIYNENVRDLLNSESGRNLKL-LDDPEKGTV-VEKLVEETANNDQH 205
+R F++K +E+Y + + DLL +S R LKL + KG V VE + + +
Sbjct: 129 DSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTLEE 188
Query: 206 LRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAGS 265
LR ++ +R V T +N+ SSRSH I+ + I+S + R L+FVDLAGS
Sbjct: 189 LRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAAR---GKLSFVDLAGS 245
Query: 266 ERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGN 325
ER ++ + G +L+E IN SL L VI LS G + HIPYR+ KLT ++ SLGGN
Sbjct: 246 ERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQ--HIPYRNHKLTMLMSDSLGGN 303
Query: 326 ARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEA 385
A+T + +SPA S+ +++ N+L +A+R + + N+ + +S K++V+ L+K VA +
Sbjct: 304 AKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKH--ISSKEMVR-LKKLVAYWKE 360
Query: 386 ELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQS 419
+ E+DL ++IEE + ++D A S
Sbjct: 361 Q--AGKKGEEEDL------VDIEEDRTRKDEADS 386
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 206/367 (56%), Gaps = 35/367 (9%)
Query: 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVY-----KPQPHERVAQPSSFSFDKVFG 89
KI V RLRPL ++E +AK++ A VD+ T+ + K + H +D+VF
Sbjct: 6 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQH---------MYDRVFD 56
Query: 90 PSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG------ITEKAVVDIY 143
+ + V+E+ K + SA+ G N IFAYGQT SGKT+T+ G +T +A+ +++
Sbjct: 57 GNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELF 115
Query: 144 NHIM--NTPERDFTIKISGLEIYNENVRDLLNSESGRNLKL-LDDPEKGTV-VEKLVEET 199
IM ++ + F++K +E+Y + + DLL + + LKL + KG V VE + +
Sbjct: 116 -RIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVS 174
Query: 200 ANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNF 259
+ + L+ +I QR T +N+ SSRSH I+ + I+ST + R L+F
Sbjct: 175 ISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIAR---GKLSF 231
Query: 260 VDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQ 319
VDLAGSER ++ + G +L+E IN SL L VI LS G + HIPYR+ KLT ++
Sbjct: 232 VDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ--HIPYRNHKLTMLMS 289
Query: 320 HSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNM----VVSDKQLVKH 375
SLGGNA+T + +SPA S+ +++ N+L +A+R + + N+ N+ V K+LV +
Sbjct: 290 DSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSY 349
Query: 376 LQKEVAR 382
+++ R
Sbjct: 350 WKEQAGR 356
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 129/351 (36%), Positives = 186/351 (52%), Gaps = 32/351 (9%)
Query: 27 GGPKPREEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDK 86
G P E + V +R+RPL +E L Q C+ V + + F F
Sbjct: 4 GLPGAEEAPVRVALRVRPLLPKELLHGHQ---SCLQ----VEPGLGRVTLGRDRHFGFHV 56
Query: 87 VFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM------------RGI 134
V E VY+ V+ + + G NAT+FAYGQT SGKTYTM +GI
Sbjct: 57 VLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGI 116
Query: 135 TEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN-SESGRNLKLLDDPEKGTVVE 193
+A+ + + I D + +S LE+Y E RDLL + R+++L +D E+G VV
Sbjct: 117 VPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRED-ERGNVVL 175
Query: 194 KLVEETANNDQHLRHLISICE---AQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCV 250
V+E + + L ++S+ E A R G T LN SSRSH + ++++ R S
Sbjct: 176 CGVKEV--DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLP 233
Query: 251 RS-----FVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSG 305
R V+ +FVDLAGSER +T + G +E IN SL+ L VI L +R G
Sbjct: 234 RPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRG 293
Query: 306 -HIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAK 355
+IPYRDSK+TRIL+ SLGGNA+T +I +SP+ S F+++ NTL +A+RA+
Sbjct: 294 SNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 177/336 (52%), Gaps = 27/336 (8%)
Query: 36 IVVTVRLRPLNKREQL---AKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSC 92
I V R+RP+ K + A + V +D DD +I++ +P SF DKVF P
Sbjct: 6 IRVIARVRPVTKEDGEGPEATNAVTFDA-DDDSIIHLLHK----GKPVSFELDKVFSPQA 60
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG------ITEKAVVDIYNHI 146
+ V++E V+ + S + G N IFAYGQT +GKTYTM G I ++A+ +++ +
Sbjct: 61 SQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEV 119
Query: 147 M-NTPERDFTIKISGLEIYNENVRDLLNSESGRNL--KLLDDPEKGTVVEKLVEETANND 203
+ ++TI +S EIYNE +RDLL E L +L D V L E +
Sbjct: 120 QEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSV 179
Query: 204 QHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSF--VASLNFVD 261
+ + R T LN+ SSRSH ++ ++++ DC LN VD
Sbjct: 180 DDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGV-----DCSTGLRTTGKLNLVD 234
Query: 262 LAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHS 321
LAGSER ++ A+G+RLRE HIN SL L VI L R GH+P+R+SKLT +LQ S
Sbjct: 235 LAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALR--SRQGHVPFRNSKLTYLLQDS 292
Query: 322 LGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEV 357
L G+++T ++ +SP + ++ +L FA R + V
Sbjct: 293 LSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 169 bits (428), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 170/336 (50%), Gaps = 48/336 (14%)
Query: 75 RVAQPSSFSFDKVFGPS-------CLTETVYEEGVKNVALSALMGINATIFAYGQTSSGK 127
RV + SF+FDK F E VY+ + G + IFAYGQT SGK
Sbjct: 91 RVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGK 150
Query: 128 TYTMRGITEKAVV------DIYNHIMN----TPERDFTIKISGLEIYNENVRDLLN---- 173
+YTM G ++ + D++ I + TP + +K+S E+YNE+VRDLL
Sbjct: 151 SYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVP 210
Query: 174 SESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQ 233
++ LK+ + P +G V+ L E + + + I + R V T +NDTSSRSH
Sbjct: 211 NKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHA 270
Query: 234 IIRL---SIQSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMT 290
+ + I L + RS + + VDLAGSERA T A G RLREG +IN SL T
Sbjct: 271 VFTIMLKQIHHDLETDDTTERS--SRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTT 328
Query: 291 LTTVIRKLSVGKRSGH--------------------IPYRDSKLTRILQHSLGGNARTAI 330
L VI L+ K S +PYRDS LT +L+ SLGGN++TA+
Sbjct: 329 LGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAM 388
Query: 331 ICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMV 366
I +SP + ++++ +TL +A +AK + A VN V
Sbjct: 389 IACISP--TDYDETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 162 bits (410), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 157/292 (53%), Gaps = 18/292 (6%)
Query: 82 FSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM----RGITEK 137
F FDK+F + V+EE + + +L G N +FAYGQT SGKT+TM G+
Sbjct: 432 FLFDKIFEREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPL 490
Query: 138 AVVDIYNHIMNTPERDFTIKISG--LEIYNENVRDLLNSESGRNLKL---LDDPEKGTVV 192
++ I+N I E+ ++ + G +EIYNE + DLLN + N K DD T V
Sbjct: 491 SLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTV 550
Query: 193 EKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRS 252
+ + + +++ +R T ND SSRSH I + +Q NS S
Sbjct: 551 TNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGY---NSLTKES 607
Query: 253 FVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDS 312
+LN +DLAGSER + + A+G RL+E IN SL L VI L++ K H+PYR+S
Sbjct: 608 SYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNL-KDGSHVPYRNS 666
Query: 313 KLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVN 364
KLT +L+HSLGGN++T + +SP ++ N+L FAT+ NN ++N
Sbjct: 667 KLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATK----VNNTRIN 714
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 162 bits (410), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 118/348 (33%), Positives = 180/348 (51%), Gaps = 36/348 (10%)
Query: 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERV-----AQPSSFSFDKV 87
E +I V VR RPLNK+E LAK ++ + ++ +P +V + +F FD
Sbjct: 50 EHRICVCVRKRPLNKQE-LAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFA 108
Query: 88 FGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM------------RGIT 135
F + E VY + + + G AT FAYGQT SGKT+TM +GI
Sbjct: 109 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIY 168
Query: 136 EKAVVDIYNHIMNTP---ERDFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVV 192
A D++ + N P + + ++ EIYN + DLLN ++ L++L+D ++ V
Sbjct: 169 AMASRDVF-LLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKA--KLRVLEDGKQQVQV 225
Query: 193 EKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRS 252
L E N+ + +I + A R G+T N SSRSH ++ +++ R +
Sbjct: 226 VGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMH------ 279
Query: 253 FVASLNFVDLAGSERASQT-HADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRD 311
+ VDLAG+ER + T AD EG IN SL+ L IR L G+ H P+R+
Sbjct: 280 --GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL--GQNKAHTPFRE 335
Query: 312 SKLTRILQHS-LGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVT 358
SKLT++L+ S +G N+RT +I T+SP +S E + NTL +A R KE++
Sbjct: 336 SKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELS 383
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/328 (36%), Positives = 173/328 (52%), Gaps = 24/328 (7%)
Query: 36 IVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYK---PQPHERVAQPSSFSFDKVFGPSC 92
I V R+RP + E+ + W D+ T+ + Q ++ Q FSFD+VF P
Sbjct: 69 IRVFCRIRPPLESEE-NRMCCTWTYHDESTVELQSIDAQAKSKMGQ-QIFSFDQVFHPLS 126
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEKA-----VVDI-YNHI 146
++E V + SAL G N IFAYGQT SGKTYTM G+ E VD+ ++ I
Sbjct: 127 SQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 185
Query: 147 MNTPER--DFTIKISGLEIYNENVRDLL-NSESGRNLKLLDDPEKGTVVEKLVEETANND 203
++ IK + LEIYNE + DLL N + +++ + + V + EET +
Sbjct: 186 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 245
Query: 204 QHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263
HLRHL+ + R TA N+ SSRSH + +L + E + V S+N VDLA
Sbjct: 246 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS---VGSINLVDLA 302
Query: 264 GSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLG 323
GSE + R+ E +IN SL LT VI L++ ++ HIPYR+SKLT +L SLG
Sbjct: 303 GSESPKTS----TRMTETKNINRSLSELTNVI--LALLQKQDHIPYRNSKLTHLLMPSLG 356
Query: 324 GNARTAIICTLSPALSHFEQSRNTLFFA 351
GN++T + +SP F++S +L FA
Sbjct: 357 GNSKTLMFINVSPFQDCFQESVKSLRFA 384
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 174/330 (52%), Gaps = 24/330 (7%)
Query: 34 EKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYK---PQPHERVAQPSSFSFDKVFGP 90
+ I V R+RP + E+ + W D+ T+ + Q ++ Q FSFD+VF P
Sbjct: 59 DNIRVFCRIRPPLESEE-NRMCCTWTYHDESTVELQSIDAQAKSKMGQ-QIFSFDQVFHP 116
Query: 91 SCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEKA-----VVDI-YN 144
++E V + SAL G N IFAYGQT SGKTYTM G+ E VD+ ++
Sbjct: 117 LSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFD 175
Query: 145 HIMNTPER--DFTIKISGLEIYNENVRDLL-NSESGRNLKLLDDPEKGTVVEKLVEETAN 201
I ++ IK + LEIYNE + DLL N + +++ + + V + EET
Sbjct: 176 SIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVL 235
Query: 202 NDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVD 261
+ HLRHL+ + R TA N+ SSRSH + +L + E + V S+N VD
Sbjct: 236 DPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS---VGSINLVD 292
Query: 262 LAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHS 321
LAGSE + R+ E +IN SL LT VI L++ ++ HIPYR+SKLT +L S
Sbjct: 293 LAGSESPKTS----TRMTETKNINRSLSELTNVI--LALLQKQDHIPYRNSKLTHLLMPS 346
Query: 322 LGGNARTAIICTLSPALSHFEQSRNTLFFA 351
LGGN++T + +SP F++S +L FA
Sbjct: 347 LGGNSKTLMFINVSPFQDCFQESVKSLRFA 376
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/328 (36%), Positives = 173/328 (52%), Gaps = 24/328 (7%)
Query: 36 IVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYK---PQPHERVAQPSSFSFDKVFGPSC 92
I V R+RP + E+ + W D+ T+ + Q ++ Q FSFD+VF P
Sbjct: 55 IRVFCRIRPPLESEE-NRMCCTWTYHDESTVELQSIDAQAKSKMGQ-QIFSFDQVFHPLS 112
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEKA-----VVDI-YNHI 146
++E V + SAL G N IFAYGQT SGKTYTM G+ E VD+ ++ I
Sbjct: 113 SQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 171
Query: 147 MNTPER--DFTIKISGLEIYNENVRDLL-NSESGRNLKLLDDPEKGTVVEKLVEETANND 203
++ IK + LEIYNE + DLL N + +++ + + V + EET +
Sbjct: 172 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 231
Query: 204 QHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263
HLRHL+ + R TA N+ SSRSH + +L + E + V S+N VDLA
Sbjct: 232 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS---VGSINLVDLA 288
Query: 264 GSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLG 323
GSE + R+ E +IN SL LT VI L++ ++ HIPYR+SKLT +L SLG
Sbjct: 289 GSESPKTS----TRMTETKNINRSLSELTNVI--LALLQKQDHIPYRNSKLTHLLMPSLG 342
Query: 324 GNARTAIICTLSPALSHFEQSRNTLFFA 351
GN++T + +SP F++S +L FA
Sbjct: 343 GNSKTLMFINVSPFQDCFQESVKSLRFA 370
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 118/348 (33%), Positives = 177/348 (50%), Gaps = 36/348 (10%)
Query: 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERV-----AQPSSFSFDKV 87
E +I V VR RPLNK+E LAK ++ V ++ +P +V + +F FD
Sbjct: 70 EHRICVCVRKRPLNKQE-LAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFA 128
Query: 88 FGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM------------RGIT 135
F + E VY + + + G AT FAYGQT SGKT+TM +GI
Sbjct: 129 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIY 188
Query: 136 EKAVVDIYNHIMNTPER---DFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVV 192
A D++ + N P + + ++ EIYN V DLLN ++ L++L+D + V
Sbjct: 189 AMASRDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA--KLRVLEDSRQQVQV 245
Query: 193 EKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRS 252
L E + +I++ A R G+T N SSRSH ++ +++ R +
Sbjct: 246 VGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLH------ 299
Query: 253 FVASLNFVDLAGSERASQT-HADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRD 311
+ VDLAG+ER + T AD EG IN SL+ L IR L G+ H P+R+
Sbjct: 300 --GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL--GQNKAHTPFRE 355
Query: 312 SKLTRILQHS-LGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVT 358
SKLT++L+ S +G N+RT +I +SP +S E + NTL +A R KE++
Sbjct: 356 SKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 403
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 173/328 (52%), Gaps = 24/328 (7%)
Query: 36 IVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYK---PQPHERVAQPSSFSFDKVFGPSC 92
I V R+RP + E+ + W D+ T+ + Q ++ Q FSFD+VF P
Sbjct: 58 IRVFCRIRPPLESEE-NRMCCTWTYHDESTVELQSIDAQAKSKMGQ-QIFSFDQVFHPLS 115
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEKA-----VVDI-YNHI 146
++E V + SAL G N IFAYGQ+ SGKTYTM G+ E VD+ ++ I
Sbjct: 116 SQSDIFEM-VSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 147 MNTPER--DFTIKISGLEIYNENVRDLL-NSESGRNLKLLDDPEKGTVVEKLVEETANND 203
++ IK + LEIYNE + DLL N + +++ + + V + EET +
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 204 QHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263
HLRHL+ + R TA N+ SSRSH + +L + E + V S+N VDLA
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS---VGSINLVDLA 291
Query: 264 GSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLG 323
GSE + R+ E +IN SL LT VI L++ ++ HIPYR+SKLT +L SLG
Sbjct: 292 GSESPKTS----TRMTETKNINRSLSELTNVI--LALLQKQDHIPYRNSKLTHLLMPSLG 345
Query: 324 GNARTAIICTLSPALSHFEQSRNTLFFA 351
GN++T + +SP F++S +L FA
Sbjct: 346 GNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 172/328 (52%), Gaps = 24/328 (7%)
Query: 36 IVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYK---PQPHERVAQPSSFSFDKVFGPSC 92
I V R+RP + E+ + W D+ T+ + Q ++ Q FSFD+VF P
Sbjct: 58 IRVFCRIRPPLESEE-NRMCCTWTYHDESTVELQSIDAQAKSKMGQ-QIFSFDQVFHPLS 115
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEKA-----VVDI-YNHI 146
++E V + SAL G N IFAYGQT SGKTYTM G+ E VD+ ++ I
Sbjct: 116 SQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 147 MNTPER--DFTIKISGLEIYNENVRDLL-NSESGRNLKLLDDPEKGTVVEKLVEETANND 203
++ IK + LEIYNE + DLL N + +++ + + V + EET +
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 204 QHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263
HLRHL+ + R TA N+ SSRSH + +L + E + V S+N VDLA
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS---VGSINLVDLA 291
Query: 264 GSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLG 323
GSE + R+ E +I SL LT VI L++ ++ HIPYR+SKLT +L SLG
Sbjct: 292 GSESPKTS----TRMTETKNIKRSLSELTNVI--LALLQKQDHIPYRNSKLTHLLMPSLG 345
Query: 324 GNARTAIICTLSPALSHFEQSRNTLFFA 351
GN++T + +SP F++S +L FA
Sbjct: 346 GNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 175/345 (50%), Gaps = 36/345 (10%)
Query: 36 IVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERV-----AQPSSFSFDKVFGP 90
I V VR RPLNK+E LAK ++ V ++ +P +V + +F FD F
Sbjct: 1 ICVCVRKRPLNKQE-LAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 59
Query: 91 SCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM------------RGITEKA 138
+ E VY + + + G AT FAYGQT SGKT+TM +GI A
Sbjct: 60 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 119
Query: 139 VVDIYNHIMNTPER---DFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKL 195
D++ + N P + + ++ EIYN V DLLN ++ L++L+D + V L
Sbjct: 120 SRDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA--KLRVLEDSRQQVQVVGL 176
Query: 196 VEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVA 255
E + +I++ A R G+T N SSRSH ++ +++ R +
Sbjct: 177 QEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLH--------G 228
Query: 256 SLNFVDLAGSERASQT-HADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKL 314
+ VDLAG+ER + T AD EG IN SL+ L IR L G+ H P+R+SKL
Sbjct: 229 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL--GQNKAHTPFRESKL 286
Query: 315 TRILQHS-LGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVT 358
T++L+ S +G N+RT +I +SP +S E + NTL +A R KE++
Sbjct: 287 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 331
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 173/345 (50%), Gaps = 32/345 (9%)
Query: 33 EEKIVVTVRLRPLNKREQLAKD-QVAWDCVDDHTIVYKPQPH---ERVAQPSSFSFDKVF 88
E +I V VR RPLNK+E KD V D +V++P+ R + +F FD F
Sbjct: 88 EHRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAF 147
Query: 89 GPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM------------RGITE 136
S E VY + + + AT FAYGQT SGKT+TM +GI
Sbjct: 148 DDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYA 207
Query: 137 KAVVDIYNHIM--NTPERDFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEK 194
A D++ + N + + + + EIY+ V DLLN ++ L++L+D ++ V
Sbjct: 208 LAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKT--KLRVLEDGKQQVQVVG 265
Query: 195 LVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFV 254
L E + + LI I + R G+T+ N SSRSH + Q LR
Sbjct: 266 LQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVF----QIILRRKG----KLH 317
Query: 255 ASLNFVDLAGSERASQTHADGARLR-EGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSK 313
+ +DLAG+ER + T + + R EG IN SL+ L IR L G+ H P+R SK
Sbjct: 318 GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRAL--GRNKPHTPFRASK 375
Query: 314 LTRILQHS-LGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEV 357
LT++L+ S +G N+RT +I T+SP ++ E + NTL +A R KE+
Sbjct: 376 LTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 170/340 (50%), Gaps = 27/340 (7%)
Query: 36 IVVTVRLRP-LNKREQLAKDQVAWDCVDDHTIVYKPQPH--ERVAQPSSFSFDKVFGPSC 92
I V +R+RP L E + + DD++ V + + AQ F FDK+F
Sbjct: 61 IRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 120
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM----RGITEKAVVDIYNHI-- 146
V++E V + S+L G N IFAYGQT SGKT+TM GI + I+N I
Sbjct: 121 TNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 179
Query: 147 MNTPERDFTIKISGLEIYNENVRDLLNSES--------GRNLKLLDDPEKGTVVEKLVEE 198
+ T D+ + +EIYNEN+ DLL S++ G ++ D E T V
Sbjct: 180 LKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 239
Query: 199 TANNDQHLRHLI-SICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASL 257
+ + +I R TA N+ SSRSH I + + + N+ +L
Sbjct: 240 VKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS---NAKTGAHSYGTL 296
Query: 258 NFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLS---VGKRSGHIPYRDSKL 314
N VDLAGSER + + G RLRE +IN SL L VI L KR HIP+R+SKL
Sbjct: 297 NLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKR--HIPFRNSKL 354
Query: 315 TRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRA 354
T +LQ+SL G+++T + +SP+ SH ++ N+L FA++
Sbjct: 355 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 149 bits (375), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 118/367 (32%), Positives = 177/367 (48%), Gaps = 26/367 (7%)
Query: 28 GPKPREEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTI-VYKPQPHERVAQPSSFSFDK 86
GP R + V VRLRP A D +D ++ + + H+ + + FD
Sbjct: 18 GPPAR---VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLK---YQFDA 71
Query: 87 VFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG------ITEKAVV 140
+G + +Y V+ + L G NA++ AYG T +GKT+TM G + +A++
Sbjct: 72 FYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALM 131
Query: 141 DIYNHIMNTPERD----FTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLV 196
D+ ++ +S LEIY E V DLL+ SG +L + +D ++ L
Sbjct: 132 DLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASG-DLVIREDCRGNILIPGLS 190
Query: 197 EETANNDQHL-RHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVA 255
++ ++ RH + R VG T LN SSRSH ++ + + RE R
Sbjct: 191 QKPISSFADFERHFLPASR-NRTVGATRLNQRSSRSHAVLLVKVDQ--RERLAPFRQREG 247
Query: 256 SLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLT 315
L +DLAGSE +T G RL+E IN SL L V+ L+ G +PYRDSKLT
Sbjct: 248 KLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLP--RVPYRDSKLT 305
Query: 316 RILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQL--V 373
R+LQ SLGG+A + +I ++P + + + L FA R+KEV N N + L V
Sbjct: 306 RLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPV 365
Query: 374 KHLQKEV 380
K QKE+
Sbjct: 366 KLSQKEL 372
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 146 bits (369), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 169/340 (49%), Gaps = 27/340 (7%)
Query: 36 IVVTVRLRP-LNKREQLAKDQVAWDCVDDHTIVYKPQPH--ERVAQPSSFSFDKVFGPSC 92
I V R+RP L E + + DD++ V + + AQ F FDK+F
Sbjct: 16 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 75
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM----RGITEKAVVDIYNHI-- 146
V++E V + S+L G N IFAYGQT SGKT+TM GI + I+N I
Sbjct: 76 TNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 134
Query: 147 MNTPERDFTIKISGLEIYNENVRDLLNSES--------GRNLKLLDDPEKGTVVEKLVEE 198
+ T D+ + +EIYNEN+ DLL S++ G ++ D E T V
Sbjct: 135 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 194
Query: 199 TANNDQHLRHLI-SICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASL 257
+ + +I R TA N+ SSRSH I + + + N+ +L
Sbjct: 195 CKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS---NAKTGAHSYGTL 251
Query: 258 NFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLS---VGKRSGHIPYRDSKL 314
N VDLAGSER + + G RLRE +IN SL L VI L KR HIP+R+SKL
Sbjct: 252 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR--HIPFRNSKL 309
Query: 315 TRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRA 354
T +LQ+SL G+++T + +SP+ SH ++ N+L FA++
Sbjct: 310 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 146 bits (369), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 169/340 (49%), Gaps = 27/340 (7%)
Query: 36 IVVTVRLRP-LNKREQLAKDQVAWDCVDDHTIVYKPQPH--ERVAQPSSFSFDKVFGPSC 92
I V R+RP L E + + DD++ V + + AQ F FDK+F
Sbjct: 4 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 63
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM----RGITEKAVVDIYNHI-- 146
V++E V + S+L G N IFAYGQT SGKT+TM GI + I+N I
Sbjct: 64 TNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 122
Query: 147 MNTPERDFTIKISGLEIYNENVRDLLNSES--------GRNLKLLDDPEKGTVVEKLVEE 198
+ T D+ + +EIYNEN+ DLL S++ G ++ D E T V
Sbjct: 123 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 182
Query: 199 TANNDQHLRHLI-SICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASL 257
+ + +I R TA N+ SSRSH I + + + N+ +L
Sbjct: 183 CKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS---NAKTGAHSYGTL 239
Query: 258 NFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLS---VGKRSGHIPYRDSKL 314
N VDLAGSER + + G RLRE +IN SL L VI L KR HIP+R+SKL
Sbjct: 240 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR--HIPFRNSKL 297
Query: 315 TRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRA 354
T +LQ+SL G+++T + +SP+ SH ++ N+L FA++
Sbjct: 298 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 153/291 (52%), Gaps = 18/291 (6%)
Query: 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM--------- 131
SF D V + + VYE K+V AL G N TI YGQT +GKTYTM
Sbjct: 73 SFKLDGVLHDAS-QDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKH 131
Query: 132 RGITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNS-----ESGRNLKLLDDP 186
RGI +A+ ++ I P T+++S LEIYNE++ DLL++ S + ++++P
Sbjct: 132 RGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENP 191
Query: 187 EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLREN 246
+ G ++ L + ++ L+ E R + +N SSRSH I + +++ R
Sbjct: 192 Q-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL 250
Query: 247 SDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGH 306
S+ + + +N VDLAGSER ++ ++G L+E +IN SL L I L KR H
Sbjct: 251 SE-EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRD-H 308
Query: 307 IPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEV 357
IP+R KLT L+ SLGGN ++ + + E++ ++L FA+R K V
Sbjct: 309 IPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 153/294 (52%), Gaps = 26/294 (8%)
Query: 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM----RGITE 136
+F FD +F PS + ++EE ++ + S+L G N IFAYGQT SGKTYTM G+
Sbjct: 54 NFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIP 112
Query: 137 KAVVDIYNHIMNTPER--DFTIKISGLEIYNENVRDLL-NSESGRNLKLLDDPEK----- 188
+ I+ N ER ++ ++ +EIYNE + DLL + +S N+ + D +K
Sbjct: 113 MTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRH 172
Query: 189 -----GTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTL 243
GT + + + + ++ R T N+ SSRSH + + I
Sbjct: 173 DHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHING-- 230
Query: 244 RENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSV--- 300
N + LN VDLAGSER + + G RLRE +IN SL L VI L+
Sbjct: 231 -RNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA 289
Query: 301 GKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRA 354
GKR +IP+R+SKLT +LQ+SL G+++T + + P +H ++ N+L FA++
Sbjct: 290 GKR--YIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 168/340 (49%), Gaps = 27/340 (7%)
Query: 36 IVVTVRLRP-LNKREQLAKDQVAWDCVDDHTIVYKPQPH--ERVAQPSSFSFDKVFGPSC 92
I V R+RP L E + + DD++ V + + AQ F FDK+F
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM----RGITEKAVVDIYNHI-- 146
V++E V + S+L G N IFAYGQT SGKT+TM GI + I+N I
Sbjct: 65 TNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 123
Query: 147 MNTPERDFTIKISGLEIYNENVRDLLNSES--------GRNLKLLDDPEKGTVVEKLVEE 198
+ T D+ + +EIYNEN+ DLL S++ G ++ D E T V
Sbjct: 124 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 183
Query: 199 TANNDQHLRHLI-SICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASL 257
+ + +I R TA N+ SSRSH I + + + N+ +L
Sbjct: 184 CKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS---NAKTGAHSYGTL 240
Query: 258 NFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLS---VGKRSGHIPYRDSKL 314
N VDLAGS R + + G RLRE +IN SL L VI L KR HIP+R+SKL
Sbjct: 241 NLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR--HIPFRNSKL 298
Query: 315 TRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRA 354
T +LQ+SL G+++T + +SP+ SH ++ N+L FA++
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 168/340 (49%), Gaps = 27/340 (7%)
Query: 36 IVVTVRLRP-LNKREQLAKDQVAWDCVDDHTIVYKPQPH--ERVAQPSSFSFDKVFGPSC 92
I V R+RP L E + + DD++ V + + AQ F FDK+F
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM----RGITEKAVVDIYNHI-- 146
V++E V + S+L G N IFAYGQT SGKT+TM GI + I+N I
Sbjct: 65 TNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 123
Query: 147 MNTPERDFTIKISGLEIYNENVRDLLNSES--------GRNLKLLDDPEKGTVVEKLVEE 198
+ T D+ + +EIYNEN+ DLL S++ G ++ D E T V
Sbjct: 124 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 183
Query: 199 TANNDQHLRHLI-SICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASL 257
+ + +I R TA N+ SSRSH I + + + N+ +L
Sbjct: 184 CKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS---NAKTGAHSYGTL 240
Query: 258 NFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLS---VGKRSGHIPYRDSKL 314
N VDLAGSER + + G RLRE +I SL L VI L KR HIP+R+SKL
Sbjct: 241 NLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKR--HIPFRNSKL 298
Query: 315 TRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRA 354
T +LQ+SL G+++T + +SP+ SH ++ N+L FA++
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 157/306 (51%), Gaps = 27/306 (8%)
Query: 77 AQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM----R 132
+Q F FDK+F + +++E V + S+L G N IFAYGQT SGKTYTM
Sbjct: 71 SQVIPFKFDKIFDQQETNDEIFKE-VGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD 129
Query: 133 GITEKAVVDIYNHIMNTPERDFTIKISG--LEIYNENVRDLL------------NSESGR 178
GI + I++ I R ++ K+S +EIYNEN+ DLL N++S
Sbjct: 130 GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKH 189
Query: 179 NLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLS 238
++ D K T + + ++ + ++ R TA N+ SSRSH I +
Sbjct: 190 EIRH-DQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIH 248
Query: 239 IQSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKL 298
++ +N LN VDLAGSER + + G RLRE IN SL L VI L
Sbjct: 249 LEG---KNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHAL 305
Query: 299 -SVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRA--- 354
S + HIP+R+SKLT +LQ+SL G+++T + +SPA H ++ N+L FA++
Sbjct: 306 NSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNT 365
Query: 355 KEVTNN 360
K +T N
Sbjct: 366 KMITRN 371
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 168/340 (49%), Gaps = 27/340 (7%)
Query: 36 IVVTVRLRP-LNKREQLAKDQVAWDCVDDHTIVYKPQPH--ERVAQPSSFSFDKVFGPSC 92
I V R+RP L E + + DD++ V + + AQ F FDK+F
Sbjct: 5 IRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 64
Query: 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM----RGITEKAVVDIYNHI-- 146
V++E V + S+L G N IFAYGQT SGKT+TM GI + I+N I
Sbjct: 65 TNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 123
Query: 147 MNTPERDFTIKISGLEIYNENVRDLLNSES--------GRNLKLLDDPEKGTVVEKLVEE 198
+ T D+ + +EIYNEN+ DLL S++ G ++ D E T V
Sbjct: 124 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 183
Query: 199 TANNDQHLRHLI-SICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASL 257
+ + +I R TA N+ SS SH I + + + N+ +L
Sbjct: 184 CKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGS---NAKTGAHSYGTL 240
Query: 258 NFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLS---VGKRSGHIPYRDSKL 314
N VDLAGSER + + G RLRE +IN SL L VI L KR HIP+R+SKL
Sbjct: 241 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR--HIPFRNSKL 298
Query: 315 TRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRA 354
T +LQ+SL G+++T + +SP+ SH ++ N+L FA++
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 158/315 (50%), Gaps = 34/315 (10%)
Query: 65 TIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTS 124
T+ P P R FSFD+VF P + V+EE + + SAL G IFAYGQT
Sbjct: 72 TLSGAPAPPPR----HDFSFDRVFPPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTG 126
Query: 125 SGKTYTMRGIT------EKAVVDIYNHIMNTPER------DFTIKISGLEIYNENVRDLL 172
SGKT+TM G E + H+ + + ++ S +EIYNE VRDLL
Sbjct: 127 SGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLL 186
Query: 173 --NSESGRNLKLLDDPEKGTVVEKLVEETA-----NNDQHLRHLISICEAQRQVGETALN 225
+ G+ + + G E+L A + ++ + L+ + R V TA N
Sbjct: 187 ATGTRKGQGGEC-EIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQN 245
Query: 226 DTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAGSERASQTHADGA----RLREG 281
+ SSRSH + +L I E+S A L+ VDLAGSER A G RLRE
Sbjct: 246 ERSSRSHSVFQLQISG---EHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRET 302
Query: 282 CHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHF 341
IN SL TL VI LS + H+PYR+SKLT +LQ+SLGG+A+ + +SP +
Sbjct: 303 QAINSSLSTLGLVIMALS--NKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENV 360
Query: 342 EQSRNTLFFATRAKE 356
+S N+L FA++ +
Sbjct: 361 SESLNSLRFASKVNQ 375
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 178/346 (51%), Gaps = 36/346 (10%)
Query: 36 IVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERV-----AQPSSFSFDKVFGP 90
I V VR RPL++ E+ KD V ++ +Y +P +V + F DKVF
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDII-TVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDD 60
Query: 91 SCLTETVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTMRG-----------ITEKA 138
+ TVYE +K + + G + FAYGQT SGKTYTM G I + A
Sbjct: 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYA 120
Query: 139 VVDIYNHIMNTPERDFT--IKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVE--K 194
DI+ +N ++D T I IS EIY + DLL + + L++ +K VV+ K
Sbjct: 121 AGDIFT-FLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR--KMVAALENGKKEVVVKDLK 177
Query: 195 LVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFV 254
++ + L+ + + R++G + ND SSRSH I+ + ++ + S +
Sbjct: 178 ILRVLTKEELILKMIDGV--LLRKIGVNSQNDESSRSHAILNIDLKDINKNTS------L 229
Query: 255 ASLNFVDLAGSERASQTHADGARLR-EGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSK 313
+ F+DLAGSER + T + + + +G +IN SL+ L IR + K HIP+RDS+
Sbjct: 230 GKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKN--HIPFRDSE 287
Query: 314 LTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTN 359
LT++L+ G +++ +I +SP +S EQ+ NTL +++R K N
Sbjct: 288 LTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGN 333
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 126/248 (50%), Gaps = 22/248 (8%)
Query: 31 PREEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGP 90
P E I V R RPLN+ E L D+ + T+V + Q + FD+V P
Sbjct: 3 PAECSIKVMCRFRPLNEAEILRGDKFIPKFKGEETVV--------IGQGKPYVFDRVLPP 54
Query: 91 SCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR---------GITEKAVVD 141
+ E VY K + L G N TIFAYGQTSSGKT+TM GI + D
Sbjct: 55 NTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHD 114
Query: 142 IYNHIMNTPER-DFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEKGTVVEKLVEETA 200
I++HI + E +F IK+S EIY + +RDLL+ S NL + +D + V+ E
Sbjct: 115 IFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDV-SKTNLAVHEDKNRVPYVKGCTERFV 173
Query: 201 NNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFV 260
++ + + +I +A R V T +N+ SSRSH I ++I+ +EN + + L V
Sbjct: 174 SSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIK---QENVETEKKLSGKLYLV 230
Query: 261 DLAGSERA 268
DLAGSE+
Sbjct: 231 DLAGSEKV 238
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 137/291 (47%), Gaps = 33/291 (11%)
Query: 82 FSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR--------- 132
F FD F + + +Y+ + + L G T AYGQT +GK+Y+M
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 133 ---GITEKAVVDIYNHIMNTPERD---FTIKISGLEIYNENVRDLLNSESGRNLKLLDDP 186
GI +A+ DI+ + E + + S +EIYNE DLL S P
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP-------HMP 175
Query: 187 EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLREN 246
++ ++ L H++ + R+V T +N SSRSH I+ + ++S
Sbjct: 176 MVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS----- 230
Query: 247 SDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGH 306
++ + +N VDLAGSE +T +G +EG +INL L+++ V+ ++ G
Sbjct: 231 ----KTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-- 284
Query: 307 IPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEV 357
IPYRDS LT +LQ SL + + +SP ++ +TL F T AK++
Sbjct: 285 IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 135/289 (46%), Gaps = 33/289 (11%)
Query: 82 FSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR--------- 132
F FD F + + +Y+ + + L G T AYGQT +GK+Y+M
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 133 ---GITEKAVVDIYNHIMNTPERD---FTIKISGLEIYNENVRDLLNSESGRNLKLLDDP 186
GI +A+ DI+ + E + + S +EIYNE DLL S P
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP-------HMP 175
Query: 187 EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLREN 246
++ ++ L H++ + R+V T +N SSRSH I+ + ++S
Sbjct: 176 MVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS----- 230
Query: 247 SDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGH 306
++ + +N VDLAGSE +T +G +EG +INL L+++ V+ ++ G
Sbjct: 231 ----KTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-- 284
Query: 307 IPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAK 355
IPYRDS LT +LQ SL + + +SP ++ +TL F T AK
Sbjct: 285 IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 285 NLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQS 344
N SL L VI L+ G ++ H+PYRDSK+TRILQ SLGGN RT I+ SP++ + ++
Sbjct: 1 NKSLSALGNVISALAEGTKT-HVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAET 59
Query: 345 RNTLFFATRAKEVTNNAQVNM 365
++TL F RAK + N VN+
Sbjct: 60 KSTLMFGQRAKTIKNTVSVNL 80
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 283 HINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFE 342
+IN SL L VI L+ G ++ H+PYRDSK+TRILQ SL GN RT I+ SP++ +
Sbjct: 3 NINKSLSALGNVISALAEGTKT-HVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEA 61
Query: 343 QSRNTLFFATRAKEVTNNAQVNM 365
++++TL F RAK + N VN+
Sbjct: 62 ETKSTLMFGQRAKTIKNTVSVNL 84
>pdb|1GXD|C Chain C, Prommp-2TIMP-2 Complex
pdb|1GXD|D Chain D, Prommp-2TIMP-2 Complex
pdb|1BR9|A Chain A, Human Tissue Inhibitor Of Metalloproteinase-2
Length = 194
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 506 RALEVLQKEVACHRLGNQDAAETIARLQAEIREMRAVRSVSKEVEVGTVIAPNKSVCA 563
RA V +KEV GN I R+Q EI++++ + K++E AP+ +VC
Sbjct: 20 RAKAVSEKEVDS---GNDIYGNPIKRIQYEIKQIKMFKGPEKDIEF-IYTAPSSAVCG 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,345,331
Number of Sequences: 62578
Number of extensions: 1031530
Number of successful extensions: 2718
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2389
Number of HSP's gapped (non-prelim): 102
length of query: 962
length of database: 14,973,337
effective HSP length: 108
effective length of query: 854
effective length of database: 8,214,913
effective search space: 7015535702
effective search space used: 7015535702
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)