Query 002128
Match_columns 962
No_of_seqs 398 out of 2034
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 17:08:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 2.6E-87 5.7E-92 799.1 35.7 396 30-429 45-472 (1041)
2 PF11995 DUF3490: Domain of un 100.0 6.6E-88 1.4E-92 655.8 14.6 161 779-944 1-161 (161)
3 KOG0245 Kinesin-like protein [ 100.0 1.1E-85 2.4E-90 770.9 31.8 381 33-417 3-424 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 3.8E-85 8.3E-90 754.1 28.8 356 33-390 4-368 (574)
5 KOG0242 Kinesin-like protein [ 100.0 1.3E-84 2.7E-89 773.7 32.3 393 32-430 4-409 (675)
6 PLN03188 kinesin-12 family pro 100.0 5.2E-79 1.1E-83 733.4 39.4 347 33-392 97-474 (1320)
7 KOG0240 Kinesin (SMY1 subfamil 100.0 1.5E-79 3.2E-84 691.6 31.6 338 32-379 5-353 (607)
8 cd01370 KISc_KIP3_like Kinesin 100.0 1E-76 2.2E-81 661.8 33.8 322 35-357 1-338 (338)
9 cd01373 KISc_KLP2_like Kinesin 100.0 5.4E-76 1.2E-80 655.8 33.7 315 35-357 2-337 (337)
10 KOG0241 Kinesin-like protein [ 100.0 5.1E-76 1.1E-80 676.6 32.0 390 33-423 3-418 (1714)
11 cd01368 KISc_KIF23_like Kinesi 100.0 9.2E-75 2E-79 647.8 33.1 316 35-355 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3E-73 6.5E-78 637.9 35.0 330 34-364 1-356 (356)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 1.5E-72 3.2E-77 627.1 35.3 323 34-357 1-333 (333)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.7E-72 3.7E-77 630.7 35.0 328 34-365 2-351 (352)
15 cd01367 KISc_KIF2_like Kinesin 100.0 3E-72 6.5E-77 622.1 33.0 311 34-355 1-322 (322)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 5.9E-72 1.3E-76 619.1 33.8 315 35-357 1-321 (321)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.7E-70 3.7E-75 608.3 34.6 315 33-357 1-325 (325)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 1.5E-70 3.2E-75 612.3 33.7 316 35-358 2-341 (341)
19 cd01376 KISc_KID_like Kinesin 100.0 2.8E-70 6.2E-75 605.5 33.7 308 35-355 1-319 (319)
20 cd01375 KISc_KIF9_like Kinesin 100.0 1.5E-69 3.2E-74 603.4 33.9 314 35-355 1-334 (334)
21 cd01366 KISc_C_terminal Kinesi 100.0 7.2E-68 1.6E-72 588.0 34.6 315 34-359 2-328 (329)
22 smart00129 KISc Kinesin motor, 100.0 1.5E-67 3.2E-72 586.3 34.3 326 35-364 1-335 (335)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 3E-68 6.5E-73 631.7 23.7 325 33-363 313-646 (670)
24 cd00106 KISc Kinesin motor dom 100.0 1.6E-66 3.5E-71 575.9 35.0 319 35-355 1-328 (328)
25 PF00225 Kinesin: Kinesin moto 100.0 1.1E-66 2.4E-71 578.7 25.4 317 41-357 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 6E-65 1.3E-69 571.1 27.4 325 28-362 202-546 (676)
27 KOG0244 Kinesin-like protein [ 100.0 1.1E-64 2.4E-69 597.3 13.5 366 42-420 1-378 (913)
28 KOG0247 Kinesin-like protein [ 100.0 4.6E-62 9.9E-67 560.9 31.1 334 27-364 24-443 (809)
29 COG5059 KIP1 Kinesin-like prot 100.0 1.5E-57 3.1E-62 536.8 28.0 319 32-366 20-345 (568)
30 cd01363 Motor_domain Myosin an 100.0 2.3E-46 4.9E-51 385.0 16.6 173 97-336 8-186 (186)
31 COG5059 KIP1 Kinesin-like prot 97.8 1.8E-07 3.9E-12 112.3 -12.1 251 34-299 305-566 (568)
32 COG0556 UvrB Helicase subunit 95.3 0.026 5.6E-07 66.8 6.1 85 80-169 3-101 (663)
33 PF00308 Bac_DnaA: Bacterial d 93.5 0.035 7.6E-07 59.4 1.7 51 80-133 3-53 (219)
34 PRK06893 DNA replication initi 91.4 0.13 2.7E-06 55.4 2.6 51 79-135 10-60 (229)
35 PRK06620 hypothetical protein; 89.0 0.24 5.2E-06 53.0 2.2 50 79-132 10-62 (214)
36 COG2805 PilT Tfp pilus assembl 88.6 0.24 5.2E-06 55.6 2.0 32 101-132 112-143 (353)
37 PRK14086 dnaA chromosomal repl 88.3 0.3 6.5E-06 59.8 2.8 53 79-134 282-334 (617)
38 PRK12377 putative replication 88.3 0.32 6.9E-06 53.4 2.7 53 81-135 70-122 (248)
39 PRK06526 transposase; Provisio 87.9 0.27 5.9E-06 54.0 1.8 44 88-136 77-120 (254)
40 PRK08116 hypothetical protein; 87.2 0.32 6.9E-06 53.8 1.9 52 80-133 80-133 (268)
41 PRK06835 DNA replication prote 86.3 0.3 6.4E-06 55.7 1.1 40 96-137 167-206 (329)
42 PRK08084 DNA replication initi 86.2 0.54 1.2E-05 50.8 3.0 50 79-134 16-65 (235)
43 PRK14088 dnaA chromosomal repl 86.1 0.42 9.1E-06 56.5 2.2 51 79-133 99-149 (440)
44 PRK07952 DNA replication prote 86.0 0.51 1.1E-05 51.7 2.7 53 81-135 68-120 (244)
45 PRK09087 hypothetical protein; 85.8 0.47 1E-05 51.1 2.2 48 79-132 15-62 (226)
46 TIGR00362 DnaA chromosomal rep 85.6 0.48 1E-05 55.1 2.4 53 79-134 104-156 (405)
47 PRK00149 dnaA chromosomal repl 85.1 0.52 1.1E-05 55.7 2.4 53 79-134 116-168 (450)
48 PRK05642 DNA replication initi 84.4 0.74 1.6E-05 49.7 3.0 49 79-134 13-65 (234)
49 COG1474 CDC6 Cdc6-related prot 84.0 1.5 3.3E-05 50.8 5.4 50 106-163 33-83 (366)
50 TIGR03420 DnaA_homol_Hda DnaA 83.2 0.91 2E-05 47.8 3.0 49 79-133 9-57 (226)
51 PRK14087 dnaA chromosomal repl 82.9 0.76 1.6E-05 54.6 2.5 50 81-133 111-160 (450)
52 TIGR00631 uvrb excinuclease AB 82.2 1.3 2.9E-05 54.9 4.3 83 82-169 2-98 (655)
53 PF04851 ResIII: Type III rest 81.8 0.63 1.4E-05 46.4 1.1 30 104-133 14-44 (184)
54 COG2804 PulE Type II secretory 81.6 0.87 1.9E-05 54.4 2.3 32 102-133 246-277 (500)
55 PRK08181 transposase; Validate 81.3 1.1 2.3E-05 49.9 2.8 26 111-138 105-130 (269)
56 PRK08727 hypothetical protein; 81.3 0.85 1.8E-05 49.2 1.9 48 79-134 13-61 (233)
57 TIGR02928 orc1/cdc6 family rep 81.2 1.3 2.7E-05 50.4 3.4 26 106-131 31-57 (365)
58 PRK00411 cdc6 cell division co 81.1 1.3 2.8E-05 50.8 3.5 38 93-131 34-72 (394)
59 PRK08903 DnaA regulatory inact 80.9 1.3 2.9E-05 47.0 3.2 51 79-134 12-62 (227)
60 PRK10884 SH3 domain-containing 80.3 4.8 0.0001 43.3 7.1 64 367-430 89-157 (206)
61 COG0593 DnaA ATPase involved i 79.6 1.2 2.6E-05 52.2 2.6 51 79-132 81-131 (408)
62 cd00009 AAA The AAA+ (ATPases 79.3 1.3 2.9E-05 41.5 2.4 27 105-131 10-36 (151)
63 PRK08939 primosomal protein Dn 78.9 1.1 2.4E-05 50.6 1.9 53 82-135 124-177 (306)
64 KOG0239 Kinesin (KAR3 subfamil 78.2 1.7 3.7E-05 54.0 3.4 86 80-176 26-113 (670)
65 PF09726 Macoilin: Transmembra 76.1 16 0.00035 46.0 10.9 69 370-439 417-494 (697)
66 cd00046 DEXDc DEAD-like helica 75.0 1.3 2.7E-05 41.2 0.8 17 117-133 3-19 (144)
67 TIGR02538 type_IV_pilB type IV 74.2 1.8 3.9E-05 52.9 2.1 29 105-133 307-335 (564)
68 smart00053 DYNc Dynamin, GTPas 73.4 12 0.00026 41.1 7.9 54 199-268 85-138 (240)
69 PRK06921 hypothetical protein; 73.1 2.3 5.1E-05 47.0 2.5 39 96-135 97-138 (266)
70 COG1484 DnaC DNA replication p 73.1 2.2 4.8E-05 46.9 2.3 55 80-137 74-128 (254)
71 PF05673 DUF815: Protein of un 72.9 4.1 8.9E-05 44.9 4.2 126 80-235 22-155 (249)
72 PTZ00454 26S protease regulato 72.3 5.5 0.00012 46.8 5.4 51 81-131 141-196 (398)
73 PLN00020 ribulose bisphosphate 72.2 7.3 0.00016 45.6 6.2 69 80-148 110-205 (413)
74 PRK12422 chromosomal replicati 71.6 2.8 6.2E-05 49.8 2.9 53 79-134 105-161 (445)
75 PF00270 DEAD: DEAD/DEAH box h 71.5 2.2 4.8E-05 42.2 1.7 25 105-131 7-31 (169)
76 PRK10436 hypothetical protein; 70.7 2.2 4.8E-05 51.0 1.7 28 105-132 209-236 (462)
77 PF13245 AAA_19: Part of AAA d 70.4 2.4 5.1E-05 38.2 1.5 26 106-132 3-28 (76)
78 TIGR02533 type_II_gspE general 70.4 2.3 5E-05 51.1 1.8 29 105-133 233-261 (486)
79 COG4962 CpaF Flp pilus assembl 70.4 3.8 8.3E-05 47.1 3.4 27 104-131 164-190 (355)
80 PF01695 IstB_IS21: IstB-like 70.2 2 4.3E-05 44.7 1.1 24 114-137 47-70 (178)
81 PF01935 DUF87: Domain of unkn 70.0 1.5 3.3E-05 46.5 0.2 22 117-138 26-47 (229)
82 PF00437 T2SE: Type II/IV secr 70.0 2.1 4.5E-05 46.8 1.2 18 114-131 127-144 (270)
83 smart00382 AAA ATPases associa 69.3 1.9 4.1E-05 39.8 0.6 19 115-133 3-21 (148)
84 PF13401 AAA_22: AAA domain; P 69.2 1.6 3.5E-05 41.5 0.2 18 114-131 4-21 (131)
85 PF12846 AAA_10: AAA-like doma 68.8 1.7 3.7E-05 47.0 0.3 20 114-133 1-20 (304)
86 PTZ00112 origin recognition co 68.5 6.3 0.00014 50.5 4.9 23 111-133 778-800 (1164)
87 PRK10865 protein disaggregatio 68.3 2.8E+02 0.006 36.2 19.6 38 102-139 187-224 (857)
88 TIGR01420 pilT_fam pilus retra 68.1 2.7 5.9E-05 48.1 1.7 31 103-133 111-141 (343)
89 COG5008 PilU Tfp pilus assembl 67.7 3.7 8E-05 45.8 2.5 32 101-132 114-145 (375)
90 PRK03992 proteasome-activating 67.7 4 8.7E-05 47.6 3.0 51 81-131 127-182 (389)
91 TIGR03015 pepcterm_ATPase puta 67.4 3.6 7.8E-05 44.5 2.4 22 110-131 39-60 (269)
92 TIGR02525 plasmid_TraJ plasmid 66.8 3.2 7E-05 48.3 1.9 28 105-133 141-168 (372)
93 cd01131 PilT Pilus retraction 66.7 2.3 5.1E-05 44.6 0.7 18 115-132 2-19 (198)
94 PRK09183 transposase/IS protei 66.3 2.9 6.3E-05 46.1 1.4 46 84-134 77-122 (259)
95 KOG0989 Replication factor C, 65.8 4.2 9.2E-05 46.1 2.5 37 95-131 37-74 (346)
96 TIGR02524 dot_icm_DotB Dot/Icm 65.7 3.4 7.3E-05 47.8 1.8 25 109-133 129-153 (358)
97 TIGR01242 26Sp45 26S proteasom 65.2 8.5 0.00018 44.2 5.0 52 81-132 118-174 (364)
98 cd01129 PulE-GspE PulE/GspE Th 64.5 3.6 7.8E-05 45.5 1.7 28 106-133 72-99 (264)
99 COG2433 Uncharacterized conser 62.8 16 0.00034 44.8 6.6 62 372-433 444-509 (652)
100 PF13604 AAA_30: AAA domain; P 62.5 4 8.7E-05 42.9 1.6 28 105-132 9-36 (196)
101 PTZ00361 26 proteosome regulat 62.1 17 0.00036 43.4 6.7 16 116-131 219-234 (438)
102 PF01637 Arch_ATPase: Archaeal 61.1 3.4 7.4E-05 42.7 0.7 29 103-131 9-37 (234)
103 PRK13894 conjugal transfer ATP 59.8 4.7 0.0001 46.0 1.6 29 104-133 139-167 (319)
104 COG1223 Predicted ATPase (AAA+ 59.4 7.6 0.00016 43.3 3.0 36 115-150 152-210 (368)
105 KOG0727 26S proteasome regulat 59.1 23 0.00049 39.5 6.5 68 83-150 153-248 (408)
106 COG1222 RPT1 ATP-dependent 26S 59.1 25 0.00054 41.0 7.1 115 36-151 95-245 (406)
107 PF13479 AAA_24: AAA domain 58.6 4.6 0.0001 42.9 1.2 20 114-133 3-22 (213)
108 PF00004 AAA: ATPase family as 58.3 3.6 7.9E-05 38.8 0.3 15 117-131 1-15 (132)
109 PF00448 SRP54: SRP54-type pro 58.3 3.8 8.2E-05 43.4 0.5 17 116-132 3-19 (196)
110 PRK12402 replication factor C 58.1 6.7 0.00014 43.8 2.4 43 83-133 13-55 (337)
111 TIGR02782 TrbB_P P-type conjug 58.0 5.2 0.00011 45.1 1.5 28 104-132 123-150 (299)
112 COG1201 Lhr Lhr-like helicases 57.9 16 0.00034 46.7 5.8 99 106-213 31-141 (814)
113 PHA02544 44 clamp loader, smal 57.4 6.6 0.00014 43.7 2.2 23 111-133 39-62 (316)
114 PF13191 AAA_16: AAA ATPase do 57.4 3.7 8.1E-05 41.3 0.2 22 110-131 20-41 (185)
115 PF01580 FtsK_SpoIIIE: FtsK/Sp 56.7 3 6.6E-05 43.5 -0.6 18 116-133 40-57 (205)
116 PF13086 AAA_11: AAA domain; P 56.6 5.8 0.00013 41.0 1.5 30 106-136 10-39 (236)
117 PF05970 PIF1: PIF1-like helic 56.6 7.7 0.00017 44.8 2.7 37 91-131 3-39 (364)
118 cd00124 MYSc Myosin motor doma 56.2 45 0.00097 42.0 9.3 35 96-131 68-103 (679)
119 PF03999 MAP65_ASE1: Microtubu 56.1 8.4 0.00018 47.7 3.0 47 780-826 288-336 (619)
120 PF14282 FlxA: FlxA-like prote 55.0 48 0.001 31.9 7.3 52 369-420 17-73 (106)
121 smart00487 DEXDc DEAD-like hel 54.9 8.1 0.00018 38.2 2.2 24 108-132 19-42 (201)
122 PF13207 AAA_17: AAA domain; P 54.9 5 0.00011 37.9 0.6 16 116-131 1-16 (121)
123 cd01382 MYSc_type_VI Myosin mo 54.7 47 0.001 42.1 9.2 35 96-131 73-108 (717)
124 PF00735 Septin: Septin; Inte 54.6 15 0.00033 41.1 4.4 21 111-131 1-21 (281)
125 PRK13833 conjugal transfer pro 53.3 7.2 0.00016 44.6 1.7 29 104-133 135-163 (323)
126 KOG0953 Mitochondrial RNA heli 52.9 16 0.00034 44.5 4.3 32 116-147 193-236 (700)
127 cd01378 MYSc_type_I Myosin mot 52.5 54 0.0012 41.3 9.2 35 96-131 68-103 (674)
128 KOG0971 Microtubule-associated 52.2 44 0.00096 42.7 8.0 39 890-928 978-1026(1243)
129 TIGR01241 FtsH_fam ATP-depende 52.0 13 0.00028 44.7 3.7 51 81-132 51-106 (495)
130 PF09726 Macoilin: Transmembra 51.8 31 0.00066 43.6 6.9 33 399-431 546-578 (697)
131 TIGR00635 ruvB Holliday juncti 51.7 8.5 0.00018 42.6 1.9 42 90-132 5-48 (305)
132 PRK12723 flagellar biosynthesi 51.5 12 0.00025 44.0 3.0 20 114-133 174-193 (388)
133 cd01130 VirB11-like_ATPase Typ 51.1 9.1 0.0002 39.7 1.9 27 104-131 16-42 (186)
134 KOG0999 Microtubule-associated 51.1 1E+02 0.0022 37.7 10.4 64 369-432 6-77 (772)
135 PF04420 CHD5: CHD5-like prote 50.9 69 0.0015 33.0 8.2 22 371-392 40-61 (161)
136 PRK11637 AmiB activator; Provi 50.5 98 0.0021 36.6 10.5 7 815-821 408-414 (428)
137 KOG0996 Structural maintenance 50.2 1.4E+02 0.003 39.6 12.0 12 120-131 114-125 (1293)
138 cd00268 DEADc DEAD-box helicas 49.8 11 0.00024 38.9 2.2 23 107-131 31-53 (203)
139 PF00580 UvrD-helicase: UvrD/R 49.7 6.8 0.00015 42.7 0.7 19 113-131 12-30 (315)
140 PRK11448 hsdR type I restricti 49.6 8.4 0.00018 50.9 1.6 35 102-137 422-456 (1123)
141 PF06005 DUF904: Protein of un 49.5 1.1E+02 0.0024 27.7 8.2 28 400-427 20-47 (72)
142 PTZ00424 helicase 45; Provisio 49.3 9.3 0.0002 43.9 1.8 25 105-131 58-82 (401)
143 PRK11776 ATP-dependent RNA hel 49.2 10 0.00022 44.8 2.2 24 106-131 35-58 (460)
144 TIGR03499 FlhF flagellar biosy 49.2 6.8 0.00015 43.7 0.7 19 116-134 196-214 (282)
145 PHA00729 NTP-binding motif con 49.2 12 0.00027 40.7 2.6 35 102-136 5-39 (226)
146 KOG0739 AAA+-type ATPase [Post 48.3 18 0.00039 41.2 3.6 68 84-151 132-226 (439)
147 PF00910 RNA_helicase: RNA hel 48.3 6.1 0.00013 37.4 0.1 26 117-146 1-26 (107)
148 PRK13900 type IV secretion sys 48.1 10 0.00022 43.6 1.8 29 103-132 150-178 (332)
149 PRK13342 recombination factor 47.9 11 0.00023 44.3 2.0 39 93-132 16-54 (413)
150 PF13671 AAA_33: AAA domain; P 47.6 7.5 0.00016 37.6 0.6 15 117-131 2-16 (143)
151 PF06005 DUF904: Protein of un 47.3 76 0.0016 28.7 6.8 52 372-429 19-70 (72)
152 PF02562 PhoH: PhoH-like prote 47.1 12 0.00026 40.2 2.0 19 113-131 18-36 (205)
153 KOG0735 AAA+-type ATPase [Post 46.8 13 0.00028 46.4 2.5 38 113-150 700-760 (952)
154 PF12329 TMF_DNA_bd: TATA elem 46.6 84 0.0018 28.5 7.1 58 369-432 10-67 (74)
155 PRK06547 hypothetical protein; 46.6 15 0.00032 38.1 2.6 29 103-131 4-32 (172)
156 COG5019 CDC3 Septin family pro 46.5 47 0.001 38.7 6.7 81 111-212 20-111 (373)
157 COG4096 HsdR Type I site-speci 46.4 15 0.00032 46.6 2.9 36 101-137 173-208 (875)
158 PF07728 AAA_5: AAA domain (dy 46.3 7.3 0.00016 37.9 0.3 15 117-131 2-16 (139)
159 PF05496 RuvB_N: Holliday junc 46.3 20 0.00044 39.2 3.7 42 88-130 23-66 (233)
160 PRK13851 type IV secretion sys 46.1 8.1 0.00018 44.6 0.7 28 104-132 153-180 (344)
161 PF00063 Myosin_head: Myosin h 45.8 12 0.00027 46.7 2.2 35 96-131 67-102 (689)
162 PRK11192 ATP-dependent RNA hel 45.6 12 0.00026 43.8 2.0 25 105-131 31-55 (434)
163 TIGR00618 sbcc exonuclease Sbc 45.4 13 0.00028 48.8 2.4 23 115-137 27-56 (1042)
164 PF11932 DUF3450: Protein of u 45.3 95 0.0021 34.0 8.8 36 399-434 64-99 (251)
165 PF13238 AAA_18: AAA domain; P 45.2 8.6 0.00019 36.1 0.6 18 117-134 1-18 (129)
166 PRK13764 ATPase; Provisional 45.1 11 0.00024 46.6 1.5 22 112-133 255-276 (602)
167 PF07724 AAA_2: AAA domain (Cd 44.9 9 0.0002 39.7 0.7 17 115-131 4-20 (171)
168 PLN03025 replication factor C 44.8 13 0.00028 42.0 2.0 20 115-134 35-54 (319)
169 PF06309 Torsin: Torsin; Inte 44.6 11 0.00024 37.6 1.3 25 117-145 56-80 (127)
170 PF06048 DUF927: Domain of unk 44.5 17 0.00036 40.6 2.8 30 101-131 181-210 (286)
171 PF04859 DUF641: Plant protein 44.2 1.3E+02 0.0027 30.5 8.5 44 395-438 84-127 (131)
172 PF02456 Adeno_IVa2: Adenoviru 44.0 8 0.00017 44.0 0.2 16 117-132 90-105 (369)
173 PRK04837 ATP-dependent RNA hel 43.2 14 0.00029 43.3 1.9 25 105-131 38-62 (423)
174 PF06414 Zeta_toxin: Zeta toxi 42.6 11 0.00024 39.4 1.0 21 112-132 13-33 (199)
175 KOG0340 ATP-dependent RNA heli 42.5 28 0.00061 40.4 4.1 26 104-131 36-61 (442)
176 cd01127 TrwB Bacterial conjuga 42.5 9 0.0002 44.9 0.3 22 114-135 42-63 (410)
177 PRK15422 septal ring assembly 42.4 77 0.0017 29.3 6.0 25 399-423 19-43 (79)
178 PF08317 Spc7: Spc7 kinetochor 42.0 61 0.0013 37.0 6.9 11 375-385 188-198 (325)
179 COG1419 FlhF Flagellar GTP-bin 41.9 17 0.00037 42.8 2.4 38 95-132 180-221 (407)
180 TIGR01243 CDC48 AAA family ATP 41.9 46 0.001 42.1 6.4 52 81-132 174-230 (733)
181 PRK09039 hypothetical protein; 41.7 82 0.0018 36.5 7.8 39 396-434 135-173 (343)
182 PF03215 Rad17: Rad17 cell cyc 41.6 16 0.00034 44.6 2.1 30 102-131 31-62 (519)
183 PRK00440 rfc replication facto 41.4 17 0.00037 40.1 2.3 22 111-132 35-56 (319)
184 PRK10590 ATP-dependent RNA hel 41.3 17 0.00036 43.2 2.3 25 105-131 31-55 (456)
185 KOG1029 Endocytic adaptor prot 41.2 1.5E+02 0.0032 37.8 9.9 65 372-436 438-503 (1118)
186 PRK14722 flhF flagellar biosyn 41.1 12 0.00025 43.8 0.9 22 114-135 137-158 (374)
187 TIGR02881 spore_V_K stage V sp 41.0 11 0.00024 41.2 0.8 20 114-133 42-61 (261)
188 KOG0933 Structural maintenance 40.6 1.9E+02 0.0042 37.8 11.1 21 80-100 113-133 (1174)
189 KOG0651 26S proteasome regulat 40.2 20 0.00043 41.1 2.5 73 79-151 126-226 (388)
190 PF07693 KAP_NTPase: KAP famil 39.9 39 0.00084 37.6 4.8 44 112-163 18-62 (325)
191 PF05529 Bap31: B-cell recepto 39.9 88 0.0019 32.8 7.2 36 398-433 154-189 (192)
192 CHL00176 ftsH cell division pr 39.8 28 0.00061 43.5 4.0 18 115-132 217-234 (638)
193 KOG2543 Origin recognition com 39.8 14 0.0003 43.3 1.2 40 114-166 30-69 (438)
194 TIGR00348 hsdR type I site-spe 39.5 20 0.00044 44.9 2.7 34 101-135 246-284 (667)
195 PRK04195 replication factor C 39.3 23 0.0005 42.5 3.1 30 102-131 26-56 (482)
196 PF14197 Cep57_CLD_2: Centroso 39.0 1.2E+02 0.0025 27.3 6.6 33 400-432 21-53 (69)
197 PRK00080 ruvB Holliday junctio 38.4 19 0.00042 40.7 2.1 18 115-132 52-69 (328)
198 COG3883 Uncharacterized protei 38.2 1.1E+02 0.0023 34.4 7.6 33 399-431 67-99 (265)
199 PRK10536 hypothetical protein; 38.0 19 0.00041 40.2 1.9 42 80-131 50-91 (262)
200 TIGR00614 recQ_fam ATP-depende 37.9 21 0.00046 42.6 2.4 25 105-131 19-43 (470)
201 TIGR00376 DNA helicase, putati 37.7 18 0.00039 45.1 1.9 20 116-135 175-194 (637)
202 PF06156 DUF972: Protein of un 37.7 1.7E+02 0.0036 28.6 8.0 36 398-433 22-57 (107)
203 PRK10416 signal recognition pa 37.2 27 0.00058 39.9 3.0 18 115-132 115-132 (318)
204 PRK11331 5-methylcytosine-spec 37.0 19 0.00042 43.1 1.9 28 322-353 320-347 (459)
205 PF05729 NACHT: NACHT domain 36.9 16 0.00035 35.7 1.1 17 116-132 2-18 (166)
206 smart00242 MYSc Myosin. Large 36.8 26 0.00057 44.0 3.1 36 95-131 73-109 (677)
207 cd01120 RecA-like_NTPases RecA 36.6 14 0.00031 35.7 0.6 18 117-134 2-19 (165)
208 PF10473 CENP-F_leu_zip: Leuci 36.5 1.1E+02 0.0024 31.2 6.9 26 490-515 110-135 (140)
209 KOG1514 Origin recognition com 36.2 54 0.0012 41.2 5.5 55 302-362 569-632 (767)
210 COG2256 MGS1 ATPase related to 35.9 21 0.00045 42.1 1.9 37 93-130 28-64 (436)
211 COG1219 ClpX ATP-dependent pro 35.8 17 0.00036 41.8 1.0 18 114-131 97-114 (408)
212 KOG1962 B-cell receptor-associ 35.8 1.2E+02 0.0026 33.0 7.4 59 374-432 130-192 (216)
213 KOG3990 Uncharacterized conser 35.6 65 0.0014 35.7 5.3 32 372-403 226-258 (305)
214 PF10412 TrwB_AAD_bind: Type I 35.6 11 0.00024 43.9 -0.4 19 116-134 17-35 (386)
215 PF10236 DAP3: Mitochondrial r 35.5 23 0.0005 40.1 2.2 25 109-133 18-42 (309)
216 PRK00771 signal recognition pa 35.5 36 0.00078 40.6 3.8 20 114-133 95-114 (437)
217 PRK13341 recombination factor 35.3 23 0.0005 44.8 2.3 23 111-133 49-71 (725)
218 TIGR01618 phage_P_loop phage n 35.3 14 0.0003 40.1 0.3 21 114-134 12-32 (220)
219 COG3883 Uncharacterized protei 35.2 1.5E+02 0.0032 33.3 8.2 35 395-429 70-104 (265)
220 KOG0729 26S proteasome regulat 35.1 28 0.00061 39.0 2.6 37 112-148 207-268 (435)
221 PF12774 AAA_6: Hydrolytic ATP 34.9 39 0.00086 36.8 3.7 32 118-149 36-84 (231)
222 PRK14974 cell division protein 34.8 38 0.00082 39.1 3.8 20 114-133 140-159 (336)
223 TIGR02902 spore_lonB ATP-depen 34.8 24 0.00051 43.1 2.2 42 82-131 62-103 (531)
224 CHL00195 ycf46 Ycf46; Provisio 34.7 33 0.00072 41.5 3.4 17 115-131 260-276 (489)
225 KOG0730 AAA+-type ATPase [Post 34.4 30 0.00065 43.0 2.9 37 115-151 469-528 (693)
226 PF12775 AAA_7: P-loop contain 34.4 21 0.00045 39.8 1.6 26 105-131 25-50 (272)
227 PRK11634 ATP-dependent RNA hel 34.4 22 0.00048 44.3 1.9 25 105-131 36-60 (629)
228 PRK10865 protein disaggregatio 34.3 23 0.00049 45.7 2.1 17 115-131 599-615 (857)
229 KOG0335 ATP-dependent RNA heli 34.2 16 0.00035 43.8 0.6 21 109-131 108-128 (482)
230 CHL00081 chlI Mg-protoporyphyr 34.1 18 0.00039 41.9 1.0 46 80-133 12-57 (350)
231 smart00763 AAA_PrkA PrkA AAA d 34.1 38 0.00082 39.5 3.6 69 80-158 44-118 (361)
232 cd01384 MYSc_type_XI Myosin mo 34.0 32 0.00069 43.3 3.2 21 111-131 85-105 (674)
233 TIGR02237 recomb_radB DNA repa 34.0 23 0.00049 37.0 1.7 25 107-131 2-29 (209)
234 PHA02244 ATPase-like protein 33.9 35 0.00075 40.1 3.2 26 105-132 112-137 (383)
235 TIGR01243 CDC48 AAA family ATP 33.8 35 0.00076 43.1 3.6 17 115-131 488-504 (733)
236 PF02388 FemAB: FemAB family; 33.7 62 0.0013 38.1 5.4 132 258-431 154-299 (406)
237 KOG0726 26S proteasome regulat 33.7 43 0.00093 38.2 3.7 36 116-151 221-279 (440)
238 COG5185 HEC1 Protein involved 33.5 2.3E+02 0.005 34.2 9.6 43 490-532 370-415 (622)
239 PF04977 DivIC: Septum formati 33.4 78 0.0017 27.9 4.8 26 405-430 24-49 (80)
240 cd01383 MYSc_type_VIII Myosin 33.2 36 0.00079 42.8 3.5 35 96-131 74-109 (677)
241 TIGR02903 spore_lon_C ATP-depe 33.1 25 0.00054 43.7 2.1 43 82-132 151-193 (615)
242 PF08614 ATG16: Autophagy prot 32.9 1.5E+02 0.0033 31.3 7.6 56 371-426 116-172 (194)
243 KOG0926 DEAH-box RNA helicase 32.8 24 0.00051 44.7 1.7 19 113-131 270-288 (1172)
244 PRK04406 hypothetical protein; 32.7 2.7E+02 0.0058 25.4 8.0 49 375-429 8-56 (75)
245 PRK10884 SH3 domain-containing 32.7 2.2E+02 0.0047 30.8 8.7 36 397-432 131-166 (206)
246 PF13851 GAS: Growth-arrest sp 32.6 1.8E+02 0.004 31.1 8.2 56 371-432 27-82 (201)
247 smart00489 DEXDc3 DEAD-like he 32.3 32 0.00069 38.6 2.6 36 90-131 9-44 (289)
248 smart00488 DEXDc2 DEAD-like he 32.3 32 0.00069 38.6 2.6 36 90-131 9-44 (289)
249 cd01385 MYSc_type_IX Myosin mo 32.3 36 0.00078 42.9 3.3 36 96-132 76-112 (692)
250 PRK06067 flagellar accessory p 32.1 31 0.00068 36.9 2.4 30 102-131 10-42 (234)
251 TIGR02640 gas_vesic_GvpN gas v 32.1 35 0.00076 37.5 2.8 27 103-131 12-38 (262)
252 PLN00206 DEAD-box ATP-dependen 32.1 34 0.00074 41.4 3.0 26 104-131 150-175 (518)
253 smart00338 BRLZ basic region l 31.9 1.5E+02 0.0032 25.7 6.1 38 396-433 24-61 (65)
254 KOG2373 Predicted mitochondria 31.9 34 0.00073 39.7 2.6 27 104-131 261-290 (514)
255 PRK10917 ATP-dependent DNA hel 31.8 34 0.00073 43.0 2.9 21 111-131 279-299 (681)
256 PRK05580 primosome assembly pr 31.7 23 0.00049 44.5 1.4 17 115-131 163-179 (679)
257 PF14662 CCDC155: Coiled-coil 31.6 98 0.0021 33.1 5.8 31 401-431 98-128 (193)
258 PF13476 AAA_23: AAA domain; P 31.6 20 0.00043 36.3 0.8 17 115-131 20-36 (202)
259 cd01381 MYSc_type_VII Myosin m 31.5 39 0.00085 42.5 3.4 35 96-131 68-103 (671)
260 cd02021 GntK Gluconate kinase 31.5 19 0.00042 35.4 0.6 15 117-131 2-16 (150)
261 PRK05703 flhF flagellar biosyn 31.5 20 0.00043 42.5 0.8 19 116-134 223-241 (424)
262 cd01387 MYSc_type_XV Myosin mo 31.5 38 0.00082 42.7 3.3 35 96-131 69-104 (677)
263 PF00170 bZIP_1: bZIP transcri 31.5 1.6E+02 0.0034 25.5 6.2 37 396-432 24-60 (64)
264 PRK04537 ATP-dependent RNA hel 31.4 28 0.00061 42.8 2.1 25 105-131 39-63 (572)
265 COG0419 SbcC ATPase involved i 31.4 34 0.00074 44.4 3.0 23 115-137 26-55 (908)
266 PRK00888 ftsB cell division pr 31.3 91 0.002 30.1 5.1 30 403-432 32-61 (105)
267 TIGR02788 VirB11 P-type DNA tr 31.3 28 0.00061 39.3 1.9 29 102-131 133-161 (308)
268 cd01377 MYSc_type_II Myosin mo 31.2 38 0.00082 42.8 3.2 36 95-131 72-108 (693)
269 PF13173 AAA_14: AAA domain 30.7 22 0.00047 34.5 0.8 16 116-131 4-19 (128)
270 KOG2391 Vacuolar sorting prote 30.7 1.8E+02 0.0038 33.8 7.9 62 371-432 218-280 (365)
271 cd01850 CDC_Septin CDC/Septin. 30.5 24 0.00052 39.3 1.2 21 111-131 1-21 (276)
272 TIGR01817 nifA Nif-specific re 30.4 26 0.00057 42.5 1.6 45 81-131 192-236 (534)
273 PF13555 AAA_29: P-loop contai 30.4 20 0.00044 31.4 0.5 15 117-131 26-40 (62)
274 PRK04328 hypothetical protein; 30.4 34 0.00074 37.4 2.4 27 104-130 10-39 (249)
275 PRK00131 aroK shikimate kinase 30.1 24 0.00053 35.1 1.1 17 115-131 5-21 (175)
276 PHA02653 RNA helicase NPH-II; 30.0 37 0.00081 42.7 2.9 26 104-131 171-196 (675)
277 TIGR01359 UMP_CMP_kin_fam UMP- 29.7 24 0.00051 35.9 0.9 15 117-131 2-16 (183)
278 TIGR02030 BchI-ChlI magnesium 29.6 20 0.00044 41.2 0.5 32 102-133 13-44 (337)
279 COG3829 RocR Transcriptional r 29.6 34 0.00074 41.7 2.3 43 79-127 239-281 (560)
280 PF04102 SlyX: SlyX; InterPro 29.6 2.3E+02 0.0049 25.2 7.0 33 400-432 13-45 (69)
281 PRK01297 ATP-dependent RNA hel 29.5 29 0.00063 41.3 1.8 26 104-131 116-141 (475)
282 cd01123 Rad51_DMC1_radA Rad51_ 29.4 33 0.00073 36.3 2.0 29 103-131 5-36 (235)
283 COG0464 SpoVK ATPases of the A 29.4 52 0.0011 39.4 3.9 37 112-148 274-333 (494)
284 TIGR03158 cas3_cyano CRISPR-as 29.3 34 0.00073 39.5 2.2 26 106-131 6-31 (357)
285 PRK02119 hypothetical protein; 29.3 3.3E+02 0.0071 24.7 8.0 31 399-429 24-54 (73)
286 PRK13169 DNA replication intia 29.2 2.7E+02 0.0059 27.3 8.0 34 398-431 22-55 (110)
287 PRK00295 hypothetical protein; 29.1 3.1E+02 0.0067 24.5 7.7 32 399-430 20-51 (68)
288 cd01380 MYSc_type_V Myosin mot 29.0 44 0.00095 42.2 3.2 35 96-131 68-103 (691)
289 PRK07261 topology modulation p 28.9 25 0.00053 36.2 0.9 15 117-131 3-17 (171)
290 PRK09361 radB DNA repair and r 28.9 40 0.00088 35.7 2.6 31 102-132 8-41 (225)
291 PRK04325 hypothetical protein; 28.9 3.1E+02 0.0067 24.9 7.8 32 399-430 24-55 (74)
292 smart00787 Spc7 Spc7 kinetocho 28.8 1.3E+02 0.0028 34.6 6.6 6 489-494 272-277 (312)
293 PRK06995 flhF flagellar biosyn 28.8 23 0.00051 42.7 0.8 19 115-133 257-275 (484)
294 KOG0354 DEAD-box like helicase 28.6 41 0.00089 42.5 2.8 39 103-151 68-106 (746)
295 COG4942 Membrane-bound metallo 28.6 1.5E+02 0.0032 35.4 7.2 67 373-439 40-107 (420)
296 PRK14961 DNA polymerase III su 28.4 39 0.00084 39.0 2.5 25 107-131 30-55 (363)
297 COG1125 OpuBA ABC-type proline 28.4 24 0.00053 39.5 0.8 13 119-131 32-44 (309)
298 TIGR03819 heli_sec_ATPase heli 28.1 31 0.00067 39.7 1.6 29 102-131 167-195 (340)
299 TIGR02746 TraC-F-type type-IV 27.9 21 0.00046 45.3 0.2 21 114-134 430-450 (797)
300 KOG4196 bZIP transcription fac 27.9 2.3E+02 0.005 28.6 7.2 30 402-431 85-114 (135)
301 PF14257 DUF4349: Domain of un 27.7 1.5E+02 0.0033 32.6 6.9 56 370-429 138-193 (262)
302 PRK10820 DNA-binding transcrip 27.7 32 0.0007 41.8 1.7 46 80-131 199-244 (520)
303 TIGR01389 recQ ATP-dependent D 27.6 38 0.00082 41.6 2.3 26 104-131 20-45 (591)
304 cd01126 TraG_VirD4 The TraG/Tr 27.6 30 0.00066 40.0 1.4 20 117-138 2-21 (384)
305 cd00464 SK Shikimate kinase (S 27.6 27 0.00058 34.2 0.9 16 116-131 1-16 (154)
306 PF15188 CCDC-167: Coiled-coil 27.5 2.5E+02 0.0055 26.4 7.0 54 370-426 11-64 (85)
307 COG0606 Predicted ATPase with 27.5 28 0.0006 41.9 1.1 25 111-137 197-224 (490)
308 KOG1532 GTPase XAB1, interacts 27.4 62 0.0014 36.7 3.7 37 113-157 18-54 (366)
309 KOG1803 DNA helicase [Replicat 27.1 27 0.00059 42.9 0.9 20 115-134 202-221 (649)
310 PRK09270 nucleoside triphospha 27.1 54 0.0012 35.2 3.1 36 96-131 14-50 (229)
311 cd01428 ADK Adenylate kinase ( 27.0 28 0.00061 35.5 0.9 15 117-131 2-16 (194)
312 PF12325 TMF_TATA_bd: TATA ele 26.9 85 0.0018 31.2 4.2 17 371-387 16-32 (120)
313 KOG2655 Septin family protein 26.9 3E+02 0.0065 32.4 9.1 24 108-131 15-38 (366)
314 TIGR03744 traC_PFL_4706 conjug 26.9 22 0.00048 46.0 0.2 23 113-135 474-496 (893)
315 PRK11664 ATP-dependent RNA hel 26.8 43 0.00093 43.1 2.7 28 102-131 10-37 (812)
316 TIGR00602 rad24 checkpoint pro 26.8 36 0.00077 42.6 1.9 17 116-132 112-128 (637)
317 TIGR02688 conserved hypothetic 26.7 24 0.00051 42.1 0.3 27 109-137 206-232 (449)
318 PRK06696 uridine kinase; Valid 26.6 53 0.0011 35.1 2.9 29 103-131 8-39 (223)
319 PRK08118 topology modulation p 26.5 29 0.00063 35.6 0.9 14 117-130 4-17 (167)
320 COG3074 Uncharacterized protei 26.5 88 0.0019 28.3 3.7 19 400-418 20-38 (79)
321 cd01394 radB RadB. The archaea 26.5 49 0.0011 34.8 2.6 28 104-131 6-36 (218)
322 KOG2129 Uncharacterized conser 26.4 1.8E+02 0.0039 34.5 7.1 52 368-421 250-301 (552)
323 PF07794 DUF1633: Protein of u 26.4 64 0.0014 38.7 3.7 120 312-431 509-630 (790)
324 PF06745 KaiC: KaiC; InterPro 26.4 38 0.00082 35.9 1.8 27 105-131 7-36 (226)
325 PRK11057 ATP-dependent DNA hel 26.3 39 0.00085 41.8 2.1 25 105-131 33-57 (607)
326 TIGR01313 therm_gnt_kin carboh 26.3 24 0.00052 35.3 0.3 14 117-130 1-14 (163)
327 COG0630 VirB11 Type IV secreto 26.0 26 0.00056 39.9 0.5 20 113-132 142-161 (312)
328 PRK15429 formate hydrogenlyase 26.0 34 0.00073 42.9 1.5 44 82-131 373-416 (686)
329 PRK04296 thymidine kinase; Pro 26.0 24 0.00052 36.9 0.2 23 116-138 4-26 (190)
330 KOG0994 Extracellular matrix g 25.8 4E+02 0.0086 35.7 10.4 84 343-432 1176-1259(1758)
331 KOG2228 Origin recognition com 25.7 72 0.0016 37.2 3.8 40 88-131 27-66 (408)
332 TIGR00643 recG ATP-dependent D 25.6 49 0.0011 41.2 2.8 19 113-131 255-273 (630)
333 TIGR02322 phosphon_PhnN phosph 25.4 29 0.00063 35.3 0.7 17 116-132 3-19 (179)
334 TIGR02880 cbbX_cfxQ probable R 25.4 28 0.00061 38.9 0.6 17 116-132 60-76 (284)
335 cd01393 recA_like RecA is a b 25.3 49 0.0011 34.9 2.4 31 102-132 4-37 (226)
336 PRK10246 exonuclease subunit S 25.3 48 0.001 43.8 2.8 23 115-137 31-60 (1047)
337 cd01983 Fer4_NifH The Fer4_Nif 25.2 31 0.00068 30.1 0.8 17 117-133 2-18 (99)
338 PF02534 T4SS-DNA_transf: Type 25.2 48 0.001 39.2 2.6 22 115-138 45-66 (469)
339 PRK00736 hypothetical protein; 25.2 3.9E+02 0.0084 23.9 7.6 32 399-430 20-51 (68)
340 CHL00181 cbbX CbbX; Provisiona 25.1 30 0.00065 38.8 0.8 17 117-133 62-78 (287)
341 cd02020 CMPK Cytidine monophos 25.0 33 0.00071 33.2 0.9 15 117-131 2-16 (147)
342 PRK13767 ATP-dependent helicas 25.0 41 0.00089 43.6 2.1 23 107-131 42-64 (876)
343 PRK09039 hypothetical protein; 25.0 2E+02 0.0044 33.3 7.4 32 400-431 153-184 (343)
344 cd01379 MYSc_type_III Myosin m 24.9 55 0.0012 41.1 3.1 35 96-131 68-103 (653)
345 PHA02624 large T antigen; Prov 24.9 50 0.0011 41.1 2.6 28 106-133 421-450 (647)
346 COG1126 GlnQ ABC-type polar am 24.7 32 0.00069 37.7 0.8 15 117-131 31-45 (240)
347 COG3879 Uncharacterized protei 24.7 3.8E+02 0.0083 29.9 9.0 40 343-384 24-63 (247)
348 TIGR03185 DNA_S_dndD DNA sulfu 24.5 1.6E+02 0.0034 36.9 6.9 59 374-436 401-459 (650)
349 PF08317 Spc7: Spc7 kinetochor 24.3 3.1E+02 0.0066 31.5 8.7 15 372-386 210-224 (325)
350 PF12329 TMF_DNA_bd: TATA elem 24.2 1.4E+02 0.0031 27.0 4.7 40 395-434 9-48 (74)
351 cd01386 MYSc_type_XVIII Myosin 24.2 56 0.0012 41.8 3.0 35 96-131 68-103 (767)
352 PF10168 Nup88: Nuclear pore c 24.2 6.4E+02 0.014 32.3 12.1 34 178-211 367-405 (717)
353 COG4026 Uncharacterized protei 24.2 1.1E+02 0.0023 33.5 4.5 45 400-444 144-188 (290)
354 PF02367 UPF0079: Uncharacteri 24.2 32 0.00068 34.1 0.6 20 115-134 16-35 (123)
355 PRK08233 hypothetical protein; 24.2 33 0.00071 34.6 0.8 15 117-131 6-20 (182)
356 PRK12726 flagellar biosynthesi 24.1 33 0.00071 40.5 0.9 20 115-134 207-226 (407)
357 COG2433 Uncharacterized conser 24.1 2.3E+02 0.0049 35.3 7.7 7 112-118 128-134 (652)
358 PRK11889 flhF flagellar biosyn 24.1 31 0.00067 41.0 0.6 19 115-133 242-260 (436)
359 PRK15424 propionate catabolism 24.0 43 0.00094 41.0 1.9 45 81-131 215-259 (538)
360 KOG0995 Centromere-associated 24.0 4E+02 0.0087 33.0 9.7 21 504-524 351-371 (581)
361 PRK06217 hypothetical protein; 24.0 33 0.00072 35.3 0.8 15 117-131 4-18 (183)
362 PRK05298 excinuclease ABC subu 23.9 61 0.0013 40.6 3.2 85 80-169 3-101 (652)
363 PRK15422 septal ring assembly 23.6 2.3E+02 0.005 26.3 5.9 13 373-385 20-32 (79)
364 TIGR00064 ftsY signal recognit 23.6 38 0.00082 37.7 1.2 19 115-133 73-91 (272)
365 TIGR01650 PD_CobS cobaltochela 23.5 41 0.00089 38.7 1.5 18 114-131 64-81 (327)
366 PRK05416 glmZ(sRNA)-inactivati 23.5 89 0.0019 35.3 4.1 17 116-132 8-24 (288)
367 cd01124 KaiC KaiC is a circadi 23.5 37 0.00079 34.4 1.0 15 117-131 2-16 (187)
368 TIGR03817 DECH_helic helicase/ 23.4 46 0.001 42.3 2.0 25 105-131 44-68 (742)
369 PRK00846 hypothetical protein; 23.4 4.7E+02 0.01 24.2 7.9 52 375-432 10-61 (77)
370 TIGR03881 KaiC_arch_4 KaiC dom 23.4 57 0.0012 34.6 2.5 29 104-132 7-38 (229)
371 PRK14723 flhF flagellar biosyn 23.3 37 0.00079 43.3 1.1 18 115-132 186-203 (767)
372 TIGR02329 propionate_PrpR prop 23.2 43 0.00092 41.0 1.6 45 81-131 208-252 (526)
373 PRK10867 signal recognition pa 23.2 73 0.0016 38.1 3.5 19 114-132 100-118 (433)
374 PRK01172 ski2-like helicase; P 23.2 50 0.0011 41.2 2.3 22 108-131 33-54 (674)
375 PRK11034 clpA ATP-dependent Cl 23.2 64 0.0014 41.2 3.2 18 114-131 488-505 (758)
376 PRK02793 phi X174 lysis protei 23.1 4.4E+02 0.0094 23.8 7.6 32 399-430 23-54 (72)
377 PRK14721 flhF flagellar biosyn 23.1 35 0.00077 40.5 0.9 20 114-133 191-210 (420)
378 cd02023 UMPK Uridine monophosp 23.1 32 0.0007 35.7 0.5 15 117-131 2-16 (198)
379 PF07106 TBPIP: Tat binding pr 23.1 3.4E+02 0.0074 27.9 8.0 13 289-301 33-45 (169)
380 PF00485 PRK: Phosphoribulokin 23.0 32 0.00069 35.8 0.4 15 117-131 2-16 (194)
381 PF04548 AIG1: AIG1 family; I 22.9 35 0.00076 36.2 0.7 16 116-131 2-17 (212)
382 TIGR00231 small_GTP small GTP- 22.9 33 0.00072 32.2 0.5 16 116-131 3-18 (161)
383 PRK14531 adenylate kinase; Pro 22.8 38 0.00082 35.0 0.9 16 116-131 4-19 (183)
384 PF06785 UPF0242: Uncharacteri 22.8 99 0.0021 35.6 4.2 76 374-449 102-178 (401)
385 cd00820 PEPCK_HprK Phosphoenol 22.8 39 0.00084 32.8 0.9 17 115-131 16-32 (107)
386 cd00632 Prefoldin_beta Prefold 22.7 6.3E+02 0.014 24.0 9.1 33 399-431 71-103 (105)
387 TIGR03689 pup_AAA proteasome A 22.6 34 0.00073 41.7 0.6 16 116-131 218-233 (512)
388 PF00931 NB-ARC: NB-ARC domain 22.6 65 0.0014 35.0 2.8 30 102-131 5-36 (287)
389 PTZ00110 helicase; Provisional 22.5 50 0.0011 40.4 2.0 24 106-131 161-184 (545)
390 KOG3859 Septins (P-loop GTPase 22.4 55 0.0012 37.1 2.1 24 108-131 36-59 (406)
391 PF08477 Miro: Miro-like prote 22.4 32 0.0007 32.0 0.3 15 117-131 2-16 (119)
392 COG1122 CbiO ABC-type cobalt t 22.4 38 0.00082 37.1 0.9 17 115-131 31-47 (235)
393 TIGR01360 aden_kin_iso1 adenyl 22.2 40 0.00087 34.1 1.0 16 116-131 5-20 (188)
394 KOG0995 Centromere-associated 22.2 2.9E+02 0.0062 34.2 8.0 57 372-431 309-365 (581)
395 COG3598 RepA RecA-family ATPas 22.1 66 0.0014 37.2 2.7 80 84-168 60-142 (402)
396 TIGR02397 dnaX_nterm DNA polym 22.1 56 0.0012 36.9 2.2 24 108-131 29-53 (355)
397 COG1340 Uncharacterized archae 22.1 4.7E+02 0.01 29.9 9.2 158 374-538 30-190 (294)
398 TIGR03263 guanyl_kin guanylate 21.9 38 0.00082 34.3 0.7 16 116-131 3-18 (180)
399 PRK14970 DNA polymerase III su 21.9 60 0.0013 37.2 2.4 28 105-132 29-57 (367)
400 PF12325 TMF_TATA_bd: TATA ele 21.9 4.9E+02 0.011 25.9 8.3 19 370-388 22-40 (120)
401 PF10392 COG5: Golgi transport 21.8 3.4E+02 0.0073 27.0 7.4 85 344-429 7-96 (132)
402 TIGR02639 ClpA ATP-dependent C 21.8 45 0.00097 42.3 1.5 35 104-138 193-227 (731)
403 PLN03137 ATP-dependent DNA hel 21.8 53 0.0012 43.6 2.1 27 103-131 466-492 (1195)
404 TIGR02173 cyt_kin_arch cytidyl 21.7 39 0.00086 33.6 0.8 16 116-131 2-17 (171)
405 PRK06305 DNA polymerase III su 21.7 54 0.0012 39.3 2.0 41 83-131 15-56 (451)
406 PRK05986 cob(I)alamin adenolsy 21.7 34 0.00074 36.5 0.4 25 115-139 23-47 (191)
407 PF01486 K-box: K-box region; 21.7 4.5E+02 0.0097 24.7 7.8 19 372-390 20-38 (100)
408 COG1162 Predicted GTPases [Gen 21.7 86 0.0019 35.8 3.5 31 104-136 156-186 (301)
409 KOG0330 ATP-dependent RNA heli 21.7 53 0.0011 38.7 1.9 26 104-131 90-115 (476)
410 TIGR02639 ClpA ATP-dependent C 21.5 69 0.0015 40.6 3.1 17 115-131 485-501 (731)
411 PLN03230 acetyl-coenzyme A car 21.5 2.6E+02 0.0056 33.5 7.4 41 345-386 55-95 (431)
412 PF07106 TBPIP: Tat binding pr 21.5 2.3E+02 0.005 29.1 6.4 7 313-319 34-40 (169)
413 PF14532 Sigma54_activ_2: Sigm 21.5 38 0.00083 33.2 0.6 21 111-131 18-38 (138)
414 PF03962 Mnd1: Mnd1 family; I 21.4 2.2E+02 0.0047 30.3 6.3 12 289-300 30-41 (188)
415 TIGR01613 primase_Cterm phage/ 21.4 37 0.00081 38.1 0.6 30 102-131 61-93 (304)
416 PF14383 VARLMGL: DUF761-assoc 21.4 50 0.0011 25.8 1.1 20 908-927 6-25 (34)
417 PRK00300 gmk guanylate kinase; 21.4 41 0.00088 34.9 0.9 18 114-131 5-22 (205)
418 cd02025 PanK Pantothenate kina 21.4 28 0.00061 37.4 -0.3 12 120-131 5-16 (220)
419 PRK14532 adenylate kinase; Pro 21.4 43 0.00093 34.4 1.0 16 116-131 2-17 (188)
420 TIGR03238 dnd_assoc_3 dnd syst 21.2 61 0.0013 39.3 2.3 27 106-132 18-50 (504)
421 PRK14962 DNA polymerase III su 21.1 66 0.0014 38.8 2.6 41 83-131 12-53 (472)
422 PF04111 APG6: Autophagy prote 21.1 2.1E+02 0.0045 32.8 6.4 65 370-434 8-86 (314)
423 PRK15483 type III restriction- 21.0 1.3E+02 0.0028 39.5 5.3 32 805-836 913-958 (986)
424 TIGR03752 conj_TIGR03752 integ 21.0 2.1E+02 0.0044 34.7 6.5 84 339-429 55-140 (472)
425 PHA01747 putative ATP-dependen 20.9 46 0.00099 39.1 1.2 30 102-131 178-207 (425)
426 PF14817 HAUS5: HAUS augmin-li 20.8 2.8E+02 0.006 35.0 7.8 16 373-388 81-96 (632)
427 PF07716 bZIP_2: Basic region 20.7 2.7E+02 0.0059 23.4 5.5 31 396-426 23-53 (54)
428 PF04859 DUF641: Plant protein 20.6 2.1E+02 0.0046 28.9 5.6 65 821-888 53-117 (131)
429 PRK04040 adenylate kinase; Pro 20.5 44 0.00096 35.0 0.9 16 116-131 4-19 (188)
430 PF00158 Sigma54_activat: Sigm 20.5 45 0.00097 34.5 0.9 20 111-130 19-38 (168)
431 PRK12724 flagellar biosynthesi 20.4 43 0.00093 40.0 0.8 18 115-132 224-241 (432)
432 TIGR00929 VirB4_CagE type IV s 20.3 40 0.00088 42.6 0.7 20 114-133 434-453 (785)
433 PRK14963 DNA polymerase III su 20.3 57 0.0012 39.7 1.9 18 114-131 36-53 (504)
434 PF10883 DUF2681: Protein of u 20.2 4.3E+02 0.0093 25.0 7.1 29 400-428 32-60 (87)
435 TIGR02236 recomb_radA DNA repa 20.1 74 0.0016 35.7 2.6 30 102-131 80-112 (310)
436 PF13094 CENP-Q: CENP-Q, a CEN 20.1 4.7E+02 0.01 26.7 8.2 30 400-429 43-72 (160)
437 PF10923 DUF2791: P-loop Domai 20.1 70 0.0015 38.1 2.5 31 102-132 37-67 (416)
438 PRK13700 conjugal transfer pro 20.0 36 0.00079 43.0 0.2 51 117-176 188-242 (732)
439 KOG4005 Transcription factor X 20.0 2.5E+02 0.0053 31.1 6.2 41 395-435 87-127 (292)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-87 Score=799.07 Aligned_cols=396 Identities=38% Similarity=0.583 Sum_probs=347.5
Q ss_pred CCCCCCeEEEEecCCCChhhhhcCCceEEEecC-CcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHH
Q 002128 30 KPREEKIVVTVRLRPLNKREQLAKDQVAWDCVD-DHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALS 108 (962)
Q Consensus 30 ~~~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~-~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~s 108 (962)
+..+.+|+|+|||||++.+|.......++.|.+ ...|.+...... ....+.|+||+||||.+.|.+||+.++.|+|..
T Consensus 45 ~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~s-k~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~e 123 (1041)
T KOG0243|consen 45 KEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIAS-KQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKE 123 (1041)
T ss_pred CCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEeccccc-ccccceeecceeeCcchhHHHHHHHHHHHHHHH
Confidence 445568999999999999999999999999988 454666544121 123689999999999999999999999999999
Q ss_pred HhcCCceeEEEeccCCCCCccccc--------------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccC
Q 002128 109 ALMGINATIFAYGQTSSGKTYTMR--------------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNS 174 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM~--------------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~ 174 (962)
|+.|||||||||||||+||||||. |||||++.+||+.+.... .+|+|+|||+|+|||.++|||++
T Consensus 124 Vl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~ 202 (1041)
T KOG0243|consen 124 VLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLAS 202 (1041)
T ss_pred HhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCC
Confidence 999999999999999999999995 599999999999997764 79999999999999999999998
Q ss_pred CCC--CcceeeeCC-----CCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCC
Q 002128 175 ESG--RNLKLLDDP-----EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENS 247 (962)
Q Consensus 175 ~~~--~~L~i~ed~-----~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~ 247 (962)
... ..+++.+++ .+|++|.|+.++.|.++.++..+|..|...|++++|.||..|||||+||+|+|........
T Consensus 203 ~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~ 282 (1041)
T KOG0243|consen 203 EDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPE 282 (1041)
T ss_pred ccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCc
Confidence 765 456666655 6899999999999999999999999999999999999999999999999999976544443
Q ss_pred CcceeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCc
Q 002128 248 DCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNAR 327 (962)
Q Consensus 248 ~~~~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNsk 327 (962)
+..-...|+|+||||||||.++++|+.+.|.+|++.||+||++||+||.||.+ +.+|||||+|||||||||||||.++
T Consensus 283 geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe--~s~HIPYRESKLTRLLQDSLGGkTK 360 (1041)
T KOG0243|consen 283 GEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVE--HSGHIPYRESKLTRLLQDSLGGKTK 360 (1041)
T ss_pred chhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHHhCCCce
Confidence 33345679999999999999999999999999999999999999999999997 5679999999999999999999999
Q ss_pred cceeeccCCCCcchHHHHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCCh----------hHH
Q 002128 328 TAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSR----------EKD 397 (962)
Q Consensus 328 T~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~~~~~----------~ke 397 (962)
|+|||||||+..+++||++||.||.|||.|+|+|.+|..+..+.+++.|-.||++|+.+|...+... ..+
T Consensus 361 T~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e 440 (1041)
T KOG0243|consen 361 TCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEE 440 (1041)
T ss_pred eEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998765431 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 398 LKIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 398 ~~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
.+.+.+...|+++..+++.+..++.++...+.
T Consensus 441 ~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 441 KEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23455666667777777777766666666554
No 2
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=100.00 E-value=6.6e-88 Score=655.80 Aligned_cols=161 Identities=62% Similarity=1.031 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHhhhcCccceechhheeeecCCCCCceEEEEeehhHHHHHHHhhhcCCCCCCCCCCCCCcccHHHhHHH
Q 002128 779 TFREQRQQIIELWDVCFVSIIHRTQFYLLFKGDPADQIYMEVELRRLTWLQQHLSELGNASPLPVAGGEPTISLSSSIRA 858 (962)
Q Consensus 779 ~f~~~~~~IieLW~~C~vslvHRtyFfLlfkgdp~d~iymeve~rrl~~lk~~~~~~g~~~~~~~~~~~~~~s~~sS~ka 858 (962)
+||+||++||||||+|||||||||||||||||||+|+||||||+|||+|||+||+++| ||+ +|++++|++||+||
T Consensus 1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~---~~~--~~~~~~s~~sS~ka 75 (161)
T PF11995_consen 1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGG---QAA--GGGHTLSLASSIKA 75 (161)
T ss_pred ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCC---ccc--CCCCcccHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999944 445 57789999999999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHhHhhccccCCCccchhhhhhhccCCCCCchhhhHHHHHHHHHhhcccCCccchhhhc
Q 002128 859 LKREREFLAKRLSSRLTAEERDSLYIKWDVQLDGKHRRLQFVSKLWTDPHDPRHVQESAEIVAKLVGFCEGGNMSKEMFE 938 (962)
Q Consensus 859 L~rER~~L~k~m~~rl~~~Ere~ly~kwgi~l~sK~RrlQl~~~lWt~~~d~~hv~eSa~~Vaklv~~~~~~~~~kemf~ 938 (962)
|+|||+||||||++|||.+|||+||.||||||+||||||||||+|||||+||+||+|||+||||||||||||+|+|||||
T Consensus 76 L~rER~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g~~~KEMFg 155 (161)
T PF11995_consen 76 LRREREMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPGQASKEMFG 155 (161)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhccccccHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 002128 939 LNFAIP 944 (962)
Q Consensus 939 l~f~~~ 944 (962)
|||+||
T Consensus 156 LnF~~~ 161 (161)
T PF11995_consen 156 LNFTPP 161 (161)
T ss_pred cCCCCC
Confidence 999997
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-85 Score=770.86 Aligned_cols=381 Identities=37% Similarity=0.554 Sum_probs=338.3
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCC-------CchhHHHhhchHHH
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPS-------CLTETVYEEGVKNV 105 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~-------asQeeVy~~~v~pl 105 (962)
...|+|+||||||+.+|......+++.+.+..+.+..+..... ...|+||+.|+.. ++|..||+..+.++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~---~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~m 79 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKD---APKFTFDYSYWSHDSEDPHFASQKQVYEDLGREM 79 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCccc---CCceecceeeecCCCCCCchhhHHHHHHHHhHHH
Confidence 3579999999999999999888888888877776666653332 2359999999654 68999999999999
Q ss_pred HHHHhcCCceeEEEeccCCCCCccccc--------CCchHHHHHHHHHHhcCC--CCceEEEeeeEEEeccccccccc-C
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTMR--------GITEKAVVDIYNHIMNTP--ERDFTIKISGLEIYNENVRDLLN-S 174 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM~--------Gii~ral~dLF~~i~~~~--~~~f~V~vS~lEIYnE~V~DLL~-~ 174 (962)
++.+++|||+||||||||||||||||+ ||+|+.+.+||.+|.... +..|.|.|||+|||||+|+|||+ +
T Consensus 80 L~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 80 LDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 999999999999999999999999995 689999999999997654 46799999999999999999999 7
Q ss_pred CCCCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCc-ceeE
Q 002128 175 ESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDC-VRSF 253 (962)
Q Consensus 175 ~~~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~-~~~~ 253 (962)
.++.+|+++++|..|+||++|+...|.|+.++..++..|++.|++++|+||+.|||||+||+|.+.+....+... ....
T Consensus 160 ~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek 239 (1221)
T KOG0245|consen 160 KSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEK 239 (1221)
T ss_pred CCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCccee
Confidence 777899999999999999999999999999999999999999999999999999999999999999887665543 3557
Q ss_pred EEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccC-----CCCCCccccCChhhhhhhccCCCCCcc
Q 002128 254 VASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVG-----KRSGHIPYRDSKLTRILQHSLGGNART 328 (962)
Q Consensus 254 ~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g-----~k~~hIPYRDSKLTrLLqdsLGGNskT 328 (962)
+|+|+|||||||||++.+|+.|.|+|||.+||+||++||+||.||++. +++.+||||||.||+||+++|||||||
T Consensus 240 ~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKT 319 (1221)
T KOG0245|consen 240 VSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKT 319 (1221)
T ss_pred eeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchh
Confidence 899999999999999999999999999999999999999999999852 345699999999999999999999999
Q ss_pred ceeeccCCCCcchHHHHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCC---------------
Q 002128 329 AIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPS--------------- 393 (962)
Q Consensus 329 ~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~~~~--------------- 393 (962)
+|||+|||+..||+|||+|||||.|||.|+|+++||+.+..+ +|++|++||++|++.|+.....
T Consensus 320 aMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~ 398 (1221)
T KOG0245|consen 320 AMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQP 398 (1221)
T ss_pred hhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhccccccccccCCcccccccc
Confidence 999999999999999999999999999999999999998766 8899999999999998754421
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHH
Q 002128 394 --REKDLKIQQMEMEIEELKRQRDVA 417 (962)
Q Consensus 394 --~~ke~~iq~le~eieeLk~~~d~~ 417 (962)
.+.-.++++-|++|.++.+...+.
T Consensus 399 ~~e~~~~~L~E~Ek~mael~etW~EK 424 (1221)
T KOG0245|consen 399 EIEELRERLQETEKIMAELNETWEEK 424 (1221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122345566667777776655544
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.8e-85 Score=754.05 Aligned_cols=356 Identities=41% Similarity=0.629 Sum_probs=321.0
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCCc-EEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhc
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDH-TIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALM 111 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~-tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~ 111 (962)
..+|+|+||+||++..+........+.+.... .+.+.++.......++.|+||.||+++++|++||+.++.|+|++|++
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 46799999999999988776665554444433 33334333333344678999999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCccccc-------CCchHHHHHHHHHHhcCCCC-ceEEEeeeEEEecccccccccCCCCCcceee
Q 002128 112 GINATIFAYGQTSSGKTYTMR-------GITEKAVVDIYNHIMNTPER-DFTIKISGLEIYNENVRDLLNSESGRNLKLL 183 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM~-------Gii~ral~dLF~~i~~~~~~-~f~V~vS~lEIYnE~V~DLL~~~~~~~L~i~ 183 (962)
|||+||||||||||||||||. ||+|+++.+||.+|....+. .|.|+|||+|||||.|+|||++.+.+.+.++
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr 163 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELR 163 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence 999999999999999999994 78999999999999887643 6999999999999999999999987799999
Q ss_pred eCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecC
Q 002128 184 DDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263 (962)
Q Consensus 184 ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLA 263 (962)
++|..|+||+|++++.|.++++++++|..|.++|++++|.||..|||||+||+|+|++......+......|+|+|||||
T Consensus 164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLa 243 (574)
T KOG4280|consen 164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLA 243 (574)
T ss_pred EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999994443445556678999999999
Q ss_pred CCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHH
Q 002128 264 GSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQ 343 (962)
Q Consensus 264 GSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eE 343 (962)
||||..++++.|.|++|+.+||+||++||+||.+|++++ ++||||||||||+||||||||||+|+|||||+|+..+++|
T Consensus 244 gsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~-~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~E 322 (574)
T KOG4280|consen 244 GSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGS-KTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEE 322 (574)
T ss_pred chhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccc-cCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHH
Confidence 999999999999999999999999999999999999875 4599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcCC
Q 002128 344 SRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTP 390 (962)
Q Consensus 344 TlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~ 390 (962)
|++||+||+|||.|+|+|.+|+++. ++.+++||+||++|+.+|...
T Consensus 323 TlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 323 TLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDPG 368 (574)
T ss_pred HHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999976 567899999999999998654
No 5
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-84 Score=773.69 Aligned_cols=393 Identities=53% Similarity=0.798 Sum_probs=358.3
Q ss_pred CCCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCC--CCCCCCceeecceecCCCCchhHHHhhchHHHHHHH
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPH--ERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSA 109 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~--~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~sv 109 (962)
..++|.|+|||||+++++...++.+.|.+.++..+....... .... +..|.||+||+++++|++||+.+++|+|.+|
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~ 82 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSK-PEKYEFDRVFGEESTQEDVYERTTKPLLLSV 82 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCccceEecCCceeEeecccccccccc-ccceeeeeecCCCCCHHHHHHhccHHHHHHH
Confidence 457899999999999998777889999999999887765332 2222 6899999999999999999999999999999
Q ss_pred hcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCCCCCcceee
Q 002128 110 LMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRNLKLL 183 (962)
Q Consensus 110 l~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~i~ 183 (962)
+.|||+||||||||||||||||. |++|.++.+||++|.+..++.|.|.|||+|||||.|+|||+++.+ +++++
T Consensus 83 l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~-~L~ir 161 (675)
T KOG0242|consen 83 LEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGG-DLRLR 161 (675)
T ss_pred hcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCC-CceEe
Confidence 99999999999999999999995 678999999999999999999999999999999999999999876 79999
Q ss_pred eCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecC
Q 002128 184 DDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263 (962)
Q Consensus 184 ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLA 263 (962)
+|+.+|++|.||+++.|.++++++.+|..|+.+|+++.|.+|..|||||+||+|.|.+..+... . ..++|+|||||
T Consensus 162 ED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-~---~~s~L~lIDLA 237 (675)
T KOG0242|consen 162 EDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-S---RVSKLNLIDLA 237 (675)
T ss_pred EcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-c---hhheehhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999998876654 1 67899999999
Q ss_pred CCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHH
Q 002128 264 GSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQ 343 (962)
Q Consensus 264 GSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eE 343 (962)
||||+++|++.|.|++||++||+||++||+||.+|+.++...||||||||||||||++|||||+|+|||||+|+..+++|
T Consensus 238 GSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~e 317 (675)
T KOG0242|consen 238 GSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEE 317 (675)
T ss_pred hhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHH
Confidence 99999999999999999999999999999999999998777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHH-HHHHHHHHHHHHHH
Q 002128 344 SRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSR----EKDLKIQQME-MEIEELKRQRDVAQ 418 (962)
Q Consensus 344 TlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~~~~~----~ke~~iq~le-~eieeLk~~~d~~q 418 (962)
|.+||+||+|||+|++++.+|++..++.+++.+++++..|+.++....... ..+..++.++ .++.++..+.+.++
T Consensus 318 T~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 397 (675)
T KOG0242|consen 318 TKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLEPEREQELLIQKLEKEEVEELLPQRSEIQ 397 (675)
T ss_pred HHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccccchhhHHHHhHhhhhhHhhhhhhhhHHH
Confidence 999999999999999999999999999999999999999999997643222 3666778888 77888888878777
Q ss_pred HHHHHHHHHHHH
Q 002128 419 SEVDELRRKLQE 430 (962)
Q Consensus 419 ~el~~l~~~l~~ 430 (962)
...+.+......
T Consensus 398 ~~~~~~~~~~~~ 409 (675)
T KOG0242|consen 398 SLVELLKRLSAS 409 (675)
T ss_pred HHHHHHhhhccc
Confidence 776655554443
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=5.2e-79 Score=733.38 Aligned_cols=347 Identities=36% Similarity=0.572 Sum_probs=306.4
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcC
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMG 112 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G 112 (962)
..+|+|+|||||+++.|. +...++. .++.++.+. ...|.||+||+++++|++||+.++.|+|+++++|
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~iV~~-~s~dsl~I~---------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdG 164 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEMIVQK-MSNDSLTIN---------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAG 164 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCeeEEE-cCCCeEEEe---------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 568999999999998763 3333333 344455442 3589999999999999999999999999999999
Q ss_pred CceeEEEeccCCCCCccccc----------------CCchHHHHHHHHHHhcC------CCCceEEEeeeEEEecccccc
Q 002128 113 INATIFAYGQTSSGKTYTMR----------------GITEKAVVDIYNHIMNT------PERDFTIKISGLEIYNENVRD 170 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~----------------Gii~ral~dLF~~i~~~------~~~~f~V~vS~lEIYnE~V~D 170 (962)
||+||||||||||||||||+ ||+||++.+||..+... ....|.|+|||+|||||+|||
T Consensus 165 yNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~D 244 (1320)
T PLN03188 165 FNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITD 244 (1320)
T ss_pred CcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCccee
Confidence 99999999999999999995 58999999999998642 245799999999999999999
Q ss_pred cccCCCCCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCC-c
Q 002128 171 LLNSESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSD-C 249 (962)
Q Consensus 171 LL~~~~~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~-~ 249 (962)
||++... .+.+++|+.+|++|.|++++.|.+++++..+|..|..+|++++|.+|..|||||+||+|+|++......+ .
T Consensus 245 LLsp~~k-~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ 323 (1320)
T PLN03188 245 LLDPSQK-NLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGL 323 (1320)
T ss_pred ccccccC-CceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCC
Confidence 9987654 8999999999999999999999999999999999999999999999999999999999999875433222 2
Q ss_pred ceeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccC---CCCCCccccCChhhhhhhccCCCCC
Q 002128 250 VRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVG---KRSGHIPYRDSKLTRILQHSLGGNA 326 (962)
Q Consensus 250 ~~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g---~k~~hIPYRDSKLTrLLqdsLGGNs 326 (962)
.....|+|+|||||||||..++++.|.+++|+++||+||++||+||.+|+.. ++..||||||||||+||||+|||||
T Consensus 324 ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNS 403 (1320)
T PLN03188 324 SSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNA 403 (1320)
T ss_pred cceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCc
Confidence 2345799999999999999999999999999999999999999999999752 3456999999999999999999999
Q ss_pred ccceeeccCCCCcchHHHHHHHHHHHHhhccccccccccccCH-----HHHHHHHHHHHHHHHHHhcCCCC
Q 002128 327 RTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSD-----KQLVKHLQKEVARLEAELRTPDP 392 (962)
Q Consensus 327 kT~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN~~~~~-----~~li~~LqkEi~~Le~eL~~~~~ 392 (962)
+|+|||||||+..+++||++||+||+||+.|+|+|.+|..+.+ ..+|++|++|+.+|+.....+..
T Consensus 404 KTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~~ 474 (1320)
T PLN03188 404 KLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPTN 474 (1320)
T ss_pred eEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999987643 35788999999999988765543
No 7
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.5e-79 Score=691.57 Aligned_cols=338 Identities=40% Similarity=0.589 Sum_probs=309.2
Q ss_pred CCCCeEEEEecCCCChhhhhcCCceEEEecC-CcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHh
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQVAWDCVD-DHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSAL 110 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~-~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl 110 (962)
.+..|+|+||+||++..|...++..+....+ +.++.+.... ....|.||+||.|+++|++||+.++.|+|++|+
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~-----~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL 79 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTK-----ETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVL 79 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEeccc-----ccccceeeeecCCCccHHHHHHHHHHHHHHHHh
Confidence 5678999999999999998777655444444 5566554331 136899999999999999999999999999999
Q ss_pred cCCceeEEEeccCCCCCcccc---------cCCchHHHHHHHHHHhcCCC-CceEEEeeeEEEecccccccccCCCCCcc
Q 002128 111 MGINATIFAYGQTSSGKTYTM---------RGITEKAVVDIYNHIMNTPE-RDFTIKISGLEIYNENVRDLLNSESGRNL 180 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM---------~Gii~ral~dLF~~i~~~~~-~~f~V~vS~lEIYnE~V~DLL~~~~~~~L 180 (962)
.|||+|||||||||||||||| .||+||++.+||++|..... ..|+|+|||||||+|+|+|||++... ++
T Consensus 80 ~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~-nl 158 (607)
T KOG0240|consen 80 LGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKT-NL 158 (607)
T ss_pred cccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccC-Cc
Confidence 999999999999999999999 37999999999999987764 58999999999999999999998766 99
Q ss_pred eeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEE
Q 002128 181 KLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFV 260 (962)
Q Consensus 181 ~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fV 260 (962)
.+++|...+++|.|+++..|.+++++++.+..|..+|+++.|.||.+|||||.||+|+|.+...+ ..+...|+|.||
T Consensus 159 svheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e---~~~~~~gkLyLV 235 (607)
T KOG0240|consen 159 SVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVE---DKRKLSGKLYLV 235 (607)
T ss_pred eeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEecccc---chhhccccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987544 345678999999
Q ss_pred ecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcc
Q 002128 261 DLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSH 340 (962)
Q Consensus 261 DLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~ 340 (962)
||||||+++++|+.|.-+.|+++||+||.|||+||++|+.| +..|||||||||||||||+|||||||++|+|+||+..+
T Consensus 236 DLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g-~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n 314 (607)
T KOG0240|consen 236 DLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEG-PKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLN 314 (607)
T ss_pred EcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcC-CCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccc
Confidence 99999999999999999999999999999999999999987 57899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccccccccccccCHHHHHHHHHHH
Q 002128 341 FEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKE 379 (962)
Q Consensus 341 ~eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkE 379 (962)
..||.+||+|+.|||.|+|.+.+|.....+++.+.|..+
T Consensus 315 ~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~ 353 (607)
T KOG0240|consen 315 EAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKK 353 (607)
T ss_pred ccccccchhhccccccccchhhhhhHhhHHHHHHHHHHH
Confidence 999999999999999999999999998888877766544
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1e-76 Score=661.81 Aligned_cols=322 Identities=41% Similarity=0.671 Sum_probs=297.0
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCC--------CCCCCceeecceecCCCCchhHHHhhchHHHH
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHE--------RVAQPSSFSFDKVFGPSCLTETVYEEGVKNVA 106 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~--------~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV 106 (962)
+|+|+|||||+++.|...+...+|.+.++.++++.+.... ....++.|.||+||+++++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 5899999999999998888888999999988888765431 22346799999999999999999999999999
Q ss_pred HHHhcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCC-CCceEEEeeeEEEecccccccccCCCCCc
Q 002128 107 LSALMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTP-ERDFTIKISGLEIYNENVRDLLNSESGRN 179 (962)
Q Consensus 107 ~svl~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~-~~~f~V~vS~lEIYnE~V~DLL~~~~~~~ 179 (962)
+++++|||+||||||||||||||||+ ||+|+++.+||+.+.... ...|.|++||+|||||+|+|||++... +
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~-~ 159 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSG-P 159 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCC-C
Confidence 99999999999999999999999995 599999999999998765 678999999999999999999998744 8
Q ss_pred ceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEE
Q 002128 180 LKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNF 259 (962)
Q Consensus 180 L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~f 259 (962)
+.+++|+.++++|.|++++.|.++++++.+|..|..+|++++|.+|..|||||+||+|+|.+.............|+|+|
T Consensus 160 l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~ 239 (338)
T cd01370 160 LELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSL 239 (338)
T ss_pred ceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999988765543344567899999
Q ss_pred EecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCC-CCCccccCChhhhhhhccCCCCCccceeeccCCCC
Q 002128 260 VDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKR-SGHIPYRDSKLTRILQHSLGGNARTAIICTLSPAL 338 (962)
Q Consensus 260 VDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k-~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~ 338 (962)
||||||||..+++..|.+++|+.+||+||.+|++||.+|+.+++ ..||||||||||+||+|+|||||+|+||+||||+.
T Consensus 240 VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~ 319 (338)
T cd01370 240 IDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSS 319 (338)
T ss_pred EECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCch
Confidence 99999999999999999999999999999999999999997542 47999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhcc
Q 002128 339 SHFEQSRNTLFFATRAKEV 357 (962)
Q Consensus 339 ~~~eETlsTLrFAsRAk~I 357 (962)
.+++||++||+||+|||+|
T Consensus 320 ~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 320 SHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhHHHHHHHHHHHHHhccC
Confidence 9999999999999999986
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=5.4e-76 Score=655.76 Aligned_cols=315 Identities=40% Similarity=0.560 Sum_probs=284.4
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcCCc
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGIN 114 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N 114 (962)
+|+|+|||||+.+.|...+....+...++.++++...+ .+.|.||+||+++++|++||+.++.|+|+++++|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~------~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n 75 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHP------PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYN 75 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCC------CcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 69999999999999876666666666666666654331 468999999999999999999999999999999999
Q ss_pred eeEEEeccCCCCCccccc--------------CCchHHHHHHHHHHhcC-----CCCceEEEeeeEEEecccccccccCC
Q 002128 115 ATIFAYGQTSSGKTYTMR--------------GITEKAVVDIYNHIMNT-----PERDFTIKISGLEIYNENVRDLLNSE 175 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~--------------Gii~ral~dLF~~i~~~-----~~~~f~V~vS~lEIYnE~V~DLL~~~ 175 (962)
+||||||||||||||||+ ||+|+++.+||..+... ....|.|++||+|||||+|||||++.
T Consensus 76 ~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~ 155 (337)
T cd01373 76 GSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPT 155 (337)
T ss_pred eeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCC
Confidence 999999999999999995 57899999999998654 34578999999999999999999887
Q ss_pred CCCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEE
Q 002128 176 SGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVA 255 (962)
Q Consensus 176 ~~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~s 255 (962)
.. .+++++++.+|++|.|++++.|.+++++.++|..|..+|++++|.+|..|||||+||+|+|.+....... .....|
T Consensus 156 ~~-~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~-~~~~~s 233 (337)
T cd01373 156 SR-NLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASS-TNIRTS 233 (337)
T ss_pred CC-CceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCC-CcEEEE
Confidence 65 8999999999999999999999999999999999999999999999999999999999999876543322 234679
Q ss_pred EEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccC--CCCCCccccCChhhhhhhccCCCCCccceeec
Q 002128 256 SLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVG--KRSGHIPYRDSKLTRILQHSLGGNARTAIICT 333 (962)
Q Consensus 256 kL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g--~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~t 333 (962)
+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.. .+..||||||||||+||+|+|||||+|+||||
T Consensus 234 ~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~ 313 (337)
T cd01373 234 RLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIAN 313 (337)
T ss_pred EEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 9999999999999999999999999999999999999999999752 23679999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHHHhhcc
Q 002128 334 LSPALSHFEQSRNTLFFATRAKEV 357 (962)
Q Consensus 334 ISPs~~~~eETlsTLrFAsRAk~I 357 (962)
|||+..+++||++||+||+|||.|
T Consensus 314 vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 314 VSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999987
No 10
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-76 Score=676.60 Aligned_cols=390 Identities=36% Similarity=0.555 Sum_probs=341.4
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCC---CCCCCCceeecceecCCC-------CchhHHHhhch
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPH---ERVAQPSSFSFDKVFGPS-------CLTETVYEEGV 102 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~---~~~~~~~~F~FD~VF~~~-------asQeeVy~~~v 102 (962)
..+|+|+|||||++.+|......+++++...++++..+++. .....+++|.||++|.+. +.|+.||+..+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 45799999999999999988888888888777777666543 233568999999999765 58999999999
Q ss_pred HHHHHHHhcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhc--CCCCceEEEeeeEEEecccccccccC
Q 002128 103 KNVALSALMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMN--TPERDFTIKISGLEIYNENVRDLLNS 174 (962)
Q Consensus 103 ~plV~svl~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~--~~~~~f~V~vS~lEIYnE~V~DLL~~ 174 (962)
..+++++|+|||+||||||||||||||||+ ||||+.+..||..|.+ .+...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 999999999999999999999999999995 7999999999999975 45678999999999999999999998
Q ss_pred CC-CCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcc-ee
Q 002128 175 ES-GRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCV-RS 252 (962)
Q Consensus 175 ~~-~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~-~~ 252 (962)
.. .+.++++++.-.|++|.||++..|.+++++..++..|+++|+++.|+||..|||||+||.|.|.+..-+..... ..
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 65 35799999999999999999999999999999999999999999999999999999999999988765443322 23
Q ss_pred EEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCC----CCCCccccCChhhhhhhccCCCCCcc
Q 002128 253 FVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGK----RSGHIPYRDSKLTRILQHSLGGNART 328 (962)
Q Consensus 253 ~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~----k~~hIPYRDSKLTrLLqdsLGGNskT 328 (962)
.+|+|.+||||||||++++++.|.|++|+.+||+||++||.||.||++.+ +..+||||||.||+||||+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 68999999999999999999999999999999999999999999998632 34599999999999999999999999
Q ss_pred ceeeccCCCCcchHHHHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHHH
Q 002128 329 AIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPD--PSREKDLKIQQMEME 406 (962)
Q Consensus 329 ~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~~--~~~~ke~~iq~le~e 406 (962)
+||+||||++.+|+||++|||||.|||+|+|.+.+|..+.. ..+++|++|++.|+..|...+ ...+.+.+.++.++-
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpna-rvirElReEve~lr~qL~~ae~~~~~el~e~l~esekl 401 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNA-RVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKL 401 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchH-HHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765 478999999999999997744 233455556666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002128 407 IEELKRQRDVAQSEVDE 423 (962)
Q Consensus 407 ieeLk~~~d~~q~el~~ 423 (962)
|+|+....++.-.+.++
T Consensus 402 i~ei~~twEEkl~ktE~ 418 (1714)
T KOG0241|consen 402 IKEITVTWEEKLRKTEE 418 (1714)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 66666655544443333
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=9.2e-75 Score=647.76 Aligned_cols=316 Identities=33% Similarity=0.531 Sum_probs=289.4
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCC--------CCCCCceeecceecCCCCchhHHHhhchHHHH
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHE--------RVAQPSSFSFDKVFGPSCLTETVYEEGVKNVA 106 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~--------~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV 106 (962)
+|+|+|||||+.+.|...+....+.+.++.+|.+.++... ....++.|.||+||+++++|++||+.++.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 7999999999999998877888888889999888776431 23457799999999999999999999999999
Q ss_pred HHHhcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCCCC---
Q 002128 107 LSALMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESG--- 177 (962)
Q Consensus 107 ~svl~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~--- 177 (962)
+++++|||+||||||||||||||||+ ||+|+++.+||+.+.. |.|+|||+|||||+|||||++...
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~~ 156 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSSTK 156 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCcccccc
Confidence 99999999999999999999999996 5899999999999866 999999999999999999987543
Q ss_pred --CcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCC-----cc
Q 002128 178 --RNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSD-----CV 250 (962)
Q Consensus 178 --~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~-----~~ 250 (962)
.++.+++|+.++++|.|++++.|.+++++..+|..|..+|.+++|.+|..|||||+||+|+|.+......+ ..
T Consensus 157 ~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~ 236 (345)
T cd01368 157 KRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKD 236 (345)
T ss_pred CCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999876554321 23
Q ss_pred eeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCC----CCCCccccCChhhhhhhccCCCCC
Q 002128 251 RSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGK----RSGHIPYRDSKLTRILQHSLGGNA 326 (962)
Q Consensus 251 ~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~----k~~hIPYRDSKLTrLLqdsLGGNs 326 (962)
....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+..+ +..||||||||||+||+|+|||||
T Consensus 237 ~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s 316 (345)
T cd01368 237 QITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEG 316 (345)
T ss_pred ceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCC
Confidence 4568999999999999999999999999999999999999999999998632 467999999999999999999999
Q ss_pred ccceeeccCCCCcchHHHHHHHHHHHHhh
Q 002128 327 RTAIICTLSPALSHFEQSRNTLFFATRAK 355 (962)
Q Consensus 327 kT~mI~tISPs~~~~eETlsTLrFAsRAk 355 (962)
+|+||+||||+..+++||++||+||.+|+
T Consensus 317 ~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 317 KARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3e-73 Score=637.90 Aligned_cols=330 Identities=39% Similarity=0.582 Sum_probs=298.0
Q ss_pred CCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCC--CCCCCCceeecceecCCC-------CchhHHHhhchHH
Q 002128 34 EKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPH--ERVAQPSSFSFDKVFGPS-------CLTETVYEEGVKN 104 (962)
Q Consensus 34 e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~--~~~~~~~~F~FD~VF~~~-------asQeeVy~~~v~p 104 (962)
++|+|+|||||++..|...+....+.+.+. .+.+..+.. ........|.||+||+++ ++|++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~-~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGK-VTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCC-EEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHH
Confidence 479999999999999998888888888774 444444332 112346789999999999 9999999999999
Q ss_pred HHHHHhcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCCC--CceEEEeeeEEEecccccccccCCC
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTPE--RDFTIKISGLEIYNENVRDLLNSES 176 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~~--~~f~V~vS~lEIYnE~V~DLL~~~~ 176 (962)
+|+++++|||+||||||||||||||||+ ||+|+++.+||+.+..... ..|.|+|||+|||||+|||||++..
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 159 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK 159 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc
Confidence 9999999999999999999999999996 6899999999999976654 6799999999999999999999874
Q ss_pred --CCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCC-CcceeE
Q 002128 177 --GRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENS-DCVRSF 253 (962)
Q Consensus 177 --~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~-~~~~~~ 253 (962)
...+++++++.+|+++.|++++.|.+++++..+|..|.++|.+++|.+|..|||||+||+|+|.+...... ......
T Consensus 160 ~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~ 239 (356)
T cd01365 160 KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEK 239 (356)
T ss_pred cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceE
Confidence 45899999999999999999999999999999999999999999999999999999999999987654432 233457
Q ss_pred EEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCC------CCCCccccCChhhhhhhccCCCCCc
Q 002128 254 VASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGK------RSGHIPYRDSKLTRILQHSLGGNAR 327 (962)
Q Consensus 254 ~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~------k~~hIPYRDSKLTrLLqdsLGGNsk 327 (962)
.|+|+|||||||||..+++..|.+++|+..||+||.+|++||.+|+.+. +..||||||||||+||+++||||++
T Consensus 240 ~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~ 319 (356)
T cd01365 240 VSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSK 319 (356)
T ss_pred EEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCce
Confidence 8999999999999999999999999999999999999999999998643 4579999999999999999999999
Q ss_pred cceeeccCCCCcchHHHHHHHHHHHHhhccccccccc
Q 002128 328 TAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVN 364 (962)
Q Consensus 328 T~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN 364 (962)
|+||+||||...+++||++||+||++|++|+|.|++|
T Consensus 320 t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 320 TAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999999999999999876
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.5e-72 Score=627.14 Aligned_cols=323 Identities=41% Similarity=0.644 Sum_probs=295.4
Q ss_pred CCeEEEEecCCCChhhhhcCCceEEEec-CCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcC
Q 002128 34 EKIVVTVRLRPLNKREQLAKDQVAWDCV-DDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMG 112 (962)
Q Consensus 34 e~IrV~VRVRPl~~~E~~~~~~~~v~~~-~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G 112 (962)
++|+|+|||||+++.|...+....+.+. +..+|.+.++.......++.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 5799999999999999887776666653 445666665544334557899999999999999999999999999999999
Q ss_pred CceeEEEeccCCCCCccccc---------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCCCCCcceee
Q 002128 113 INATIFAYGQTSSGKTYTMR---------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRNLKLL 183 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~---------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~i~ 183 (962)
||+||||||||||||||||+ ||+|+++.+||+.+....+..|.|+|||+|||||+|+|||++.....+.++
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 99999999999999999995 589999999999998888889999999999999999999998876689999
Q ss_pred eCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecC
Q 002128 184 DDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263 (962)
Q Consensus 184 ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLA 263 (962)
+++.+|++|.|++++.|.+++++..++..|.++|.++.|.+|..|||||+||+|+|++......+......|+|+|||||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLA 240 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLA 240 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999887665434445668999999999
Q ss_pred CCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHH
Q 002128 264 GSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQ 343 (962)
Q Consensus 264 GSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eE 343 (962)
||||..+++..|.+++|+..||+||.+|++||.+|+.+ +..||||||||||+||+++|||||+|+||+||+|...+++|
T Consensus 241 GsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~-~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~e 319 (333)
T cd01371 241 GSERQSKTGATGDRLKEATKINLSLSALGNVISALVDG-KSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDE 319 (333)
T ss_pred CCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhC-CCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHH
Confidence 99999999999999999999999999999999999976 45699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 002128 344 SRNTLFFATRAKEV 357 (962)
Q Consensus 344 TlsTLrFAsRAk~I 357 (962)
|++||+||+|||.|
T Consensus 320 Tl~TL~fa~r~r~I 333 (333)
T cd01371 320 TLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999986
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.7e-72 Score=630.72 Aligned_cols=328 Identities=41% Similarity=0.607 Sum_probs=298.2
Q ss_pred CCeEEEEecCCCChhhhhcCCceEEEecCC-cEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcC
Q 002128 34 EKIVVTVRLRPLNKREQLAKDQVAWDCVDD-HTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMG 112 (962)
Q Consensus 34 e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~-~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G 112 (962)
.+|+|+||+||+...|...+....+.+.++ ++|.+.++.. .......|.||+||+++++|++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 579999999999999977777777777766 6666665432 22346789999999999999999999999999999999
Q ss_pred CceeEEEeccCCCCCccccc-----------------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCC
Q 002128 113 INATIFAYGQTSSGKTYTMR-----------------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSE 175 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~-----------------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~ 175 (962)
||+||||||||||||||||+ |++|+++.+||+.+... ...|.|+|||+|||||+|||||++.
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~ 159 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSE 159 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCc
Confidence 99999999999999999994 57899999999999776 6689999999999999999999987
Q ss_pred C--CCcceeeeC--CCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcce
Q 002128 176 S--GRNLKLLDD--PEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVR 251 (962)
Q Consensus 176 ~--~~~L~i~ed--~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~ 251 (962)
. .++++++++ ..+|++|.|++++.|.+++++..+|..|.++|++++|.+|..|||||+||+|+|.+......+...
T Consensus 160 ~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~ 239 (352)
T cd01364 160 SDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEEL 239 (352)
T ss_pred cccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCcc
Confidence 4 568999999 589999999999999999999999999999999999999999999999999999876544333333
Q ss_pred eEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCcccee
Q 002128 252 SFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAII 331 (962)
Q Consensus 252 ~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI 331 (962)
...|+|+|||||||||..+.++.+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+++|||||+|+||
T Consensus 240 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~--~~~vpyR~S~LT~lL~~~Lgg~s~t~~I 317 (352)
T cd01364 240 VKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEK--SPHIPYRESKLTRLLQDSLGGRTKTSII 317 (352)
T ss_pred EEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcC--CCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 45799999999999999999999999999999999999999999999874 4699999999999999999999999999
Q ss_pred eccCCCCcchHHHHHHHHHHHHhhcccccccccc
Q 002128 332 CTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNM 365 (962)
Q Consensus 332 ~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN~ 365 (962)
+||||+..+++||++||+||++|++|+|.|.+|.
T Consensus 318 ~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 318 ATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 9999999999999999999999999999999985
No 15
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3e-72 Score=622.13 Aligned_cols=311 Identities=37% Similarity=0.559 Sum_probs=284.0
Q ss_pred CCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCC----CCCCCceeecceecCCCCchhHHHhhchHHHHHHH
Q 002128 34 EKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHE----RVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSA 109 (962)
Q Consensus 34 e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~----~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~sv 109 (962)
.+|+|+|||||+.+.|...++...+.+.++.++.+.++... .......|.||+||+++++|++||+.++.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 36999999999999998777777788877767776654321 11125789999999999999999999999999999
Q ss_pred hcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCCCCCcceee
Q 002128 110 LMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRNLKLL 183 (962)
Q Consensus 110 l~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~i~ 183 (962)
++|||+||||||||||||||||+ ||+|+++.+||+.+.... ..|.|++||+|||||+|+|||++ .+.+.++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~--~~~l~i~ 157 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND--RKRLSVL 157 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC--ccceeEE
Confidence 99999999999999999999997 899999999999997765 68999999999999999999987 3489999
Q ss_pred eCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecC
Q 002128 184 DDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263 (962)
Q Consensus 184 ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLA 263 (962)
+++.+++++.|++++.|.+++++..+|..|..+|+++.|.+|..|||||+||+|+|..... ....|+|+|||||
T Consensus 158 ~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~s~l~~vDLA 231 (322)
T cd01367 158 EDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL------NKLLGKLSFIDLA 231 (322)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC------CeeEEEEEEeecC
Confidence 9999999999999999999999999999999999999999999999999999999987643 3467999999999
Q ss_pred CCccccccc-cchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchH
Q 002128 264 GSERASQTH-ADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFE 342 (962)
Q Consensus 264 GSER~~kt~-~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~e 342 (962)
||||...++ ..|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+|||||||+..+++
T Consensus 232 GsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~--~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~ 309 (322)
T cd01367 232 GSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK--AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCE 309 (322)
T ss_pred CccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC--CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHH
Confidence 999998765 568999999999999999999999999753 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 002128 343 QSRNTLFFATRAK 355 (962)
Q Consensus 343 ETlsTLrFAsRAk 355 (962)
||++||+||+|+|
T Consensus 310 eTl~tL~fa~r~k 322 (322)
T cd01367 310 HTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999986
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=5.9e-72 Score=619.13 Aligned_cols=315 Identities=57% Similarity=0.814 Sum_probs=292.8
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcCCc
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGIN 114 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N 114 (962)
+|+|+||+||+...|.. +....|.+.++.+|...++ .....|.||+||+++++|++||+.++.|+|+++++|+|
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n 74 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYN 74 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCc
Confidence 59999999999998873 4667888888878777654 23579999999999999999999999999999999999
Q ss_pred eeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCCCCCcceeeeCCCC
Q 002128 115 ATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRNLKLLDDPEK 188 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~i~ed~~~ 188 (962)
+||||||||||||||||+ |++|+++.+||..+.......|.|++||+|||||+|||||++... .+++++++.+
T Consensus 75 ~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~-~l~i~~~~~~ 153 (321)
T cd01374 75 GTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQ-ELRIREDPNK 153 (321)
T ss_pred eeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCC-CceEEECCCC
Confidence 999999999999999997 899999999999998888889999999999999999999998864 8999999999
Q ss_pred CeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecCCCccc
Q 002128 189 GTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAGSERA 268 (962)
Q Consensus 189 g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLAGSER~ 268 (962)
|+++.|++++.|.+++++..+|..|.++|+++.|.+|..|||||+||+|+|.+.............|+|+|||||||||.
T Consensus 154 ~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~ 233 (321)
T cd01374 154 GVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERA 233 (321)
T ss_pred CEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998765543344567899999999999999
Q ss_pred cccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHHHHHHH
Q 002128 269 SQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTL 348 (962)
Q Consensus 269 ~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eETlsTL 348 (962)
.+.+ .|.+++|+.+||+||.+|++||.+|+.+++..||||||||||+||+++|||||+|+|||||||...+++||++||
T Consensus 234 ~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (321)
T cd01374 234 SQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTL 312 (321)
T ss_pred ccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHH
Confidence 9988 899999999999999999999999998754679999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 002128 349 FFATRAKEV 357 (962)
Q Consensus 349 rFAsRAk~I 357 (962)
+||+||++|
T Consensus 313 ~~a~r~~~i 321 (321)
T cd01374 313 KFASRAKKV 321 (321)
T ss_pred HHHHHHhcC
Confidence 999999986
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.7e-70 Score=608.30 Aligned_cols=315 Identities=42% Similarity=0.605 Sum_probs=289.8
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcC
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMG 112 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G 112 (962)
+++|+|+|||||+++.|..++...++...++.+|.+..+ ...+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G 75 (325)
T cd01369 1 ECNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS-----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNG 75 (325)
T ss_pred CCCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC-----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 358999999999999997777778888888878877654 235789999999999999999999999999999999
Q ss_pred CceeEEEeccCCCCCccccc---------CCchHHHHHHHHHHhcCC-CCceEEEeeeEEEecccccccccCCCCCccee
Q 002128 113 INATIFAYGQTSSGKTYTMR---------GITEKAVVDIYNHIMNTP-ERDFTIKISGLEIYNENVRDLLNSESGRNLKL 182 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~---------Gii~ral~dLF~~i~~~~-~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~i 182 (962)
+|+||||||||||||||||+ ||+|+++.+||+.+.... ...|.|++||+|||||+|+|||++... .+.+
T Consensus 76 ~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~-~l~i 154 (325)
T cd01369 76 YNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKD-NLQV 154 (325)
T ss_pred ccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccC-CceE
Confidence 99999999999999999994 789999999999997654 347999999999999999999988754 7999
Q ss_pred eeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEec
Q 002128 183 LDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDL 262 (962)
Q Consensus 183 ~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDL 262 (962)
++++.+|++++|++++.|.+++++..+|..|..+|+++.|.+|..|||||+||+|+|.+..... .....|+|+||||
T Consensus 155 ~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~---~~~~~s~l~~VDL 231 (325)
T cd01369 155 HEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET---GSKKRGKLFLVDL 231 (325)
T ss_pred EEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC---CCEEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999998764332 2356899999999
Q ss_pred CCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchH
Q 002128 263 AGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFE 342 (962)
Q Consensus 263 AGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~e 342 (962)
|||||..++++.|.+++|+..||+||.+|++||.+|+.++ ..|||||||+||+||+++|||||+|+||+||||+..+++
T Consensus 232 AGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~-~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~ 310 (325)
T cd01369 232 AGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGK-STHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNES 310 (325)
T ss_pred CCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCC-CCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHH
Confidence 9999999999999999999999999999999999999764 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 002128 343 QSRNTLFFATRAKEV 357 (962)
Q Consensus 343 ETlsTLrFAsRAk~I 357 (962)
||++||+||+|||+|
T Consensus 311 eTl~TL~~a~r~~~i 325 (325)
T cd01369 311 ETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.5e-70 Score=612.27 Aligned_cols=316 Identities=41% Similarity=0.621 Sum_probs=286.5
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCC-cEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcCC
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDD-HTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGI 113 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~-~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~ 113 (962)
+|+|+||+||+.+.|...+....+.+... ..+...+ .+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999999887666666655433 3444332 46899999999999999999999999999999999
Q ss_pred ceeEEEeccCCCCCccccc------------CCchHHHHHHHHHHhcCCC-CceEEEeeeEEEecccccccccCCC--CC
Q 002128 114 NATIFAYGQTSSGKTYTMR------------GITEKAVVDIYNHIMNTPE-RDFTIKISGLEIYNENVRDLLNSES--GR 178 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~------------Gii~ral~dLF~~i~~~~~-~~f~V~vS~lEIYnE~V~DLL~~~~--~~ 178 (962)
|+||||||||||||||||+ ||+|+++.+||+.+..... ..|.|.|||+|||||+|||||++.. ..
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 153 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKS 153 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCC
Confidence 9999999999999999995 5889999999999987665 7899999999999999999999874 45
Q ss_pred cceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCC-------Ccce
Q 002128 179 NLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENS-------DCVR 251 (962)
Q Consensus 179 ~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~-------~~~~ 251 (962)
.+.+++++.+++++.|++++.|.++++++.+|..|..+|..+.|.+|..|||||+||+|+|.+...... ....
T Consensus 154 ~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd01372 154 PIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNS 233 (341)
T ss_pred CceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCc
Confidence 899999999999999999999999999999999999999999999999999999999999988765321 2234
Q ss_pred eEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCC-CCCccccCChhhhhhhccCCCCCccce
Q 002128 252 SFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKR-SGHIPYRDSKLTRILQHSLGGNARTAI 330 (962)
Q Consensus 252 ~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k-~~hIPYRDSKLTrLLqdsLGGNskT~m 330 (962)
...|+|+||||||||+..++++.|.+++|+..||+||.+|++||.+|+.+++ ..||||||||||+||+++||||++|+|
T Consensus 234 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~ 313 (341)
T cd01372 234 TLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLM 313 (341)
T ss_pred eeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEE
Confidence 5789999999999999999999999999999999999999999999997642 479999999999999999999999999
Q ss_pred eeccCCCCcchHHHHHHHHHHHHhhccc
Q 002128 331 ICTLSPALSHFEQSRNTLFFATRAKEVT 358 (962)
Q Consensus 331 I~tISPs~~~~eETlsTLrFAsRAk~Ik 358 (962)
|+||||...+++||++||+||+||++|+
T Consensus 314 I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 314 IACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999986
No 19
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.8e-70 Score=605.53 Aligned_cols=308 Identities=33% Similarity=0.531 Sum_probs=277.0
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCC-----cEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHH
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDD-----HTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSA 109 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~-----~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~sv 109 (962)
+|+|+|||||+.+.|.. ....+...++ ..+.+..+.. ...++.|.||+||+++++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~e~~--~~~~v~~~~~~~~~~~~v~~~~~~~--~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 76 (319)
T cd01376 1 NVRVVVRVRPFLDCEED--SSSCVRGIDSDQGQAKSVEIENPRN--RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHL 76 (319)
T ss_pred CcEEEEEeCcCCccccC--CCceEEEeCCCCCcceEEEEeCCCC--CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999988843 3333444333 3555544422 2346799999999999999999999999999999
Q ss_pred hcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCCCCCcceee
Q 002128 110 LMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRNLKLL 183 (962)
Q Consensus 110 l~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~i~ 183 (962)
++|||+||||||||||||||||+ ||+|+++.+||+.+.+.. ..|.|++||+|||||+|||||++... .+.++
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~~-~l~i~ 154 (319)
T cd01376 77 LSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAKK-ELPIR 154 (319)
T ss_pred hCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc-ccceEEEEEEEEECCEeeEccCCCCC-CceEE
Confidence 99999999999999999999995 799999999999886653 67999999999999999999998654 89999
Q ss_pred eCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecC
Q 002128 184 DDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263 (962)
Q Consensus 184 ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLA 263 (962)
+++.+++++.|++++.|.+++++..++..|..+|.+++|.+|..|||||+||+|+|.+.... ....|+|+|||||
T Consensus 155 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~-----~~~~s~l~~VDLA 229 (319)
T cd01376 155 EDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN-----IQLEGKLNLIDLA 229 (319)
T ss_pred EcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-----ceEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999876332 2567999999999
Q ss_pred CCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHH
Q 002128 264 GSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQ 343 (962)
Q Consensus 264 GSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eE 343 (962)
||||..+++..|.+++|+..||+||.+|++||.+|+.+ ..|||||||+||+||+|+|||||+|+||+||||...+++|
T Consensus 230 GsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~--~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~e 307 (319)
T cd01376 230 GSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKG--LPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQD 307 (319)
T ss_pred CCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcC--CCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHH
Confidence 99999999999999999999999999999999999875 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 002128 344 SRNTLFFATRAK 355 (962)
Q Consensus 344 TlsTLrFAsRAk 355 (962)
|++||+||+|||
T Consensus 308 Tl~TL~fa~r~~ 319 (319)
T cd01376 308 TLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHhhC
Confidence 999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.5e-69 Score=603.37 Aligned_cols=314 Identities=37% Similarity=0.534 Sum_probs=277.3
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCC------CCCCCceeecceecCCCCchhHHHhhchHHHHHH
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHE------RVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALS 108 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~------~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~s 108 (962)
+|+|+||+||+...+.. ...+ ..+...+.+..+... .......|.||+||++ ++|++||+.++.|+|++
T Consensus 1 ~i~V~vRvRP~~~~~~~---~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~ 75 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS---SIKL-GPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDS 75 (334)
T ss_pred CeEEEEECCCCCCCCCc---cEEE-cCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHH
Confidence 58999999999874421 2222 223333333322211 1223568999999999 99999999999999999
Q ss_pred HhcCCceeEEEeccCCCCCccccc---------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCCC---
Q 002128 109 ALMGINATIFAYGQTSSGKTYTMR---------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSES--- 176 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM~---------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~--- 176 (962)
+++|+|+||||||||||||||||+ ||+|+++.+||+.+....+..|.|++||+|||||+|||||++..
T Consensus 76 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~ 155 (334)
T cd01375 76 ALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEAL 155 (334)
T ss_pred HhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCcccc
Confidence 999999999999999999999995 68999999999999998888999999999999999999999874
Q ss_pred --CCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEE
Q 002128 177 --GRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFV 254 (962)
Q Consensus 177 --~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~ 254 (962)
.+.+.+++++.++++|.|++++.|.++++++.++..|..+|.+++|.+|..|||||+||+|+|.+...... ......
T Consensus 156 ~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~-~~~~~~ 234 (334)
T cd01375 156 ESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAG-SEVVRL 234 (334)
T ss_pred ccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCC-CCceEE
Confidence 35789999999999999999999999999999999999999999999999999999999999998754433 234568
Q ss_pred EEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeecc
Q 002128 255 ASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTL 334 (962)
Q Consensus 255 skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tI 334 (962)
|+|+|||||||||..+++..|.+++|+..||+||.+|++||.+|+.++ ..||||||||||+||+|+|||||+|+|||||
T Consensus 235 s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~-~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~v 313 (334)
T cd01375 235 SKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA-RTHVPYRNSKLTHVLRDSLGGNCKTVMLATI 313 (334)
T ss_pred EEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC-CCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 999999999999999999999999999999999999999999999764 4799999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhh
Q 002128 335 SPALSHFEQSRNTLFFATRAK 355 (962)
Q Consensus 335 SPs~~~~eETlsTLrFAsRAk 355 (962)
||+..+++||++||+||+|++
T Consensus 314 sp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 314 WVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999985
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=7.2e-68 Score=588.03 Aligned_cols=315 Identities=40% Similarity=0.576 Sum_probs=285.6
Q ss_pred CCeEEEEecCCCChhhhhcCCceEEEecCC--cEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhc
Q 002128 34 EKIVVTVRLRPLNKREQLAKDQVAWDCVDD--HTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALM 111 (962)
Q Consensus 34 e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~--~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~ 111 (962)
++|+|+||+||+.+.|. ......+.+.+. .+|.+... ......|.||+||+++++|++||+. +.|+|+++++
T Consensus 2 ~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~ 75 (329)
T cd01366 2 GNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALD 75 (329)
T ss_pred CCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhC
Confidence 67999999999998876 233444555555 67766543 2335789999999999999999998 6999999999
Q ss_pred CCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCC--CCceEEEeeeEEEecccccccccCCC--CCcce
Q 002128 112 GINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTP--ERDFTIKISGLEIYNENVRDLLNSES--GRNLK 181 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~--~~~f~V~vS~lEIYnE~V~DLL~~~~--~~~L~ 181 (962)
|+|+||||||+|||||||||+ |++|+++.+||+.+.... ...|.|++||+|||||+|+|||++.. ...+.
T Consensus 76 G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~ 155 (329)
T cd01366 76 GYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLE 155 (329)
T ss_pred CCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceE
Confidence 999999999999999999995 579999999999998765 46899999999999999999999873 55899
Q ss_pred eeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEe
Q 002128 182 LLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVD 261 (962)
Q Consensus 182 i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVD 261 (962)
+++++.+++++.|++++.|.+++++..++..|..+|.++.|.+|..|||||+||+|+|.+.... ......|+|+|||
T Consensus 156 i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~---~~~~~~s~l~~VD 232 (329)
T cd01366 156 IKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ---TGEQTRGKLNLVD 232 (329)
T ss_pred EEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC---CCcEEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999876543 2345689999999
Q ss_pred cCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcch
Q 002128 262 LAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHF 341 (962)
Q Consensus 262 LAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~ 341 (962)
|||+|+..+.+..|.+++|+..||+||.+|++||.+|+.+ ..|||||+|+||+||+++||||++|+||+||||...++
T Consensus 233 LaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~--~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~ 310 (329)
T cd01366 233 LAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK--DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNL 310 (329)
T ss_pred CCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC--CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhH
Confidence 9999999999999999999999999999999999999875 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 002128 342 EQSRNTLFFATRAKEVTN 359 (962)
Q Consensus 342 eETlsTLrFAsRAk~Ikn 359 (962)
+||++||+||+||++|++
T Consensus 311 ~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 311 SETLCSLRFASRVRSVEL 328 (329)
T ss_pred HHHHHHHHHHHHhhcccC
Confidence 999999999999999986
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.5e-67 Score=586.34 Aligned_cols=326 Identities=45% Similarity=0.665 Sum_probs=298.3
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCC--cEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcC
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDD--HTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMG 112 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~--~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G 112 (962)
+|+|+|||||+...|...+....+.+.+. .+|.+..+. .......|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK--NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC--CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 58999999999999887777777777655 356555432 23456899999999999999999999999999999999
Q ss_pred CceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCC-CCceEEEeeeEEEecccccccccCCCCCcceeeeC
Q 002128 113 INATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTP-ERDFTIKISGLEIYNENVRDLLNSESGRNLKLLDD 185 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~-~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~i~ed 185 (962)
+|+||||||+|||||||||+ |++|+++.+||+.+.... ...|.|+|||+|||+|+|+|||++... .+.++++
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~-~l~i~~~ 157 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPK-KLEIRED 157 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCC-CcEEEEC
Confidence 99999999999999999998 899999999999997654 568999999999999999999998754 8999999
Q ss_pred CCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecCCC
Q 002128 186 PEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAGS 265 (962)
Q Consensus 186 ~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLAGS 265 (962)
+.+++++.|++++.|.+++++..++..|..+|.+++|.+|..|||||+||+|+|.+.... ........|+|+||||||+
T Consensus 158 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~-~~~~~~~~s~l~~VDLaGs 236 (335)
T smart00129 158 KKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN-SSSGSGKASKLNLVDLAGS 236 (335)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC-CCCCCEEEEEEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999999876332 2334567899999999999
Q ss_pred ccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHHHH
Q 002128 266 ERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSR 345 (962)
Q Consensus 266 ER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eETl 345 (962)
|+..+.++.|.+++|+..||+||.+|++||.+|+.+.+..|||||+|+||+||+++|||+++|+||+||||...+++||+
T Consensus 237 e~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl 316 (335)
T smart00129 237 ERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETL 316 (335)
T ss_pred CccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHH
Confidence 99999999999999999999999999999999998767789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccc
Q 002128 346 NTLFFATRAKEVTNNAQVN 364 (962)
Q Consensus 346 sTLrFAsRAk~Ikn~~~vN 364 (962)
+||+||+++++|+|.|++|
T Consensus 317 ~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 317 STLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHHHhhcccCCCcC
Confidence 9999999999999999875
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3e-68 Score=631.71 Aligned_cols=325 Identities=39% Similarity=0.560 Sum_probs=287.8
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcC
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMG 112 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G 112 (962)
.+.|+|+|||||+.+.+............+...+....+..........|.||+||+|.++|++||.+ +.|+|.++++|
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv~S~lDG 391 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEE-VSPLVQSALDG 391 (670)
T ss_pred hcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHH-HHHHHHHHhcC
Confidence 46899999999999988765333333333333455554444444444579999999999999999998 99999999999
Q ss_pred CceeEEEeccCCCCCcccccC-------CchHHHHHHHHHHhcCC-CCceEEEeeeEEEecccccccccCCC-CCcceee
Q 002128 113 INATIFAYGQTSSGKTYTMRG-------ITEKAVVDIYNHIMNTP-ERDFTIKISGLEIYNENVRDLLNSES-GRNLKLL 183 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~G-------ii~ral~dLF~~i~~~~-~~~f~V~vS~lEIYnE~V~DLL~~~~-~~~L~i~ 183 (962)
||+||||||||||||||||.| |+||++..||..+.... ...|.+.+||+|||||.|+|||++.. ...+.|.
T Consensus 392 YnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~ 471 (670)
T KOG0239|consen 392 YNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIV 471 (670)
T ss_pred cceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEE
Confidence 999999999999999999965 89999999999987654 57899999999999999999999874 5689999
Q ss_pred eCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecC
Q 002128 184 DDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263 (962)
Q Consensus 184 ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLA 263 (962)
++++++.+|.+++.+.|.+.+++..++..|..+|++++|.+|++|||||+||+|+|... +........+.|+|||||
T Consensus 472 ~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~---~~~t~~~~~g~l~LVDLA 548 (670)
T KOG0239|consen 472 DDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI---NELTGIRVTGVLNLVDLA 548 (670)
T ss_pred EcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc---ccCcccccccceeEeecc
Confidence 99999999999999999999999999999999999999999999999999999999765 223334567899999999
Q ss_pred CCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHH
Q 002128 264 GSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQ 343 (962)
Q Consensus 264 GSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eE 343 (962)
||||+++++..|.|++|+.+||+||++||.||.||+. +..||||||||||+|||++|||+++|+|+++|||...++.|
T Consensus 549 GSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~--k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~E 626 (670)
T KOG0239|consen 549 GSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS--KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFE 626 (670)
T ss_pred cCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh--cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhh
Confidence 9999999999999999999999999999999999986 67799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccc
Q 002128 344 SRNTLFFATRAKEVTNNAQV 363 (962)
Q Consensus 344 TlsTLrFAsRAk~Ikn~~~v 363 (962)
|+++|+||.|++.+...+-.
T Consensus 627 tl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 627 TLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred hhhccchHHHhhceeccccc
Confidence 99999999999999765443
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.6e-66 Score=575.91 Aligned_cols=319 Identities=45% Similarity=0.665 Sum_probs=290.0
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcCCc
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGIN 114 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N 114 (962)
+|+|+||+||+...| .......+.+.++++|.+.++..........|.||+||+++++|++||+.++.|+|+++++|+|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 589999999998876 3345667777776778777665434455789999999999999999999999999999999999
Q ss_pred eeEEEeccCCCCCcccccC------CchHHHHHHHHHHhcCC--CCceEEEeeeEEEecccccccccCC-CCCcceeeeC
Q 002128 115 ATIFAYGQTSSGKTYTMRG------ITEKAVVDIYNHIMNTP--ERDFTIKISGLEIYNENVRDLLNSE-SGRNLKLLDD 185 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~G------ii~ral~dLF~~i~~~~--~~~f~V~vS~lEIYnE~V~DLL~~~-~~~~L~i~ed 185 (962)
+||||||+|||||||||+| ++|+++.+||+.+.... ...|.|.+||+|||+|+|+|||++. ....+.++++
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~ 159 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRED 159 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEc
Confidence 9999999999999999987 99999999999998776 5789999999999999999999987 2348999999
Q ss_pred CCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecCCC
Q 002128 186 PEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAGS 265 (962)
Q Consensus 186 ~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLAGS 265 (962)
+.+++++.|++++.|.+++++..++..|..+|..+.|.+|..|||||+||+|+|.+........ ....|+|+||||||+
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~-~~~~s~l~~VDLaGs 238 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGR-SIKSSKLNLVDLAGS 238 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCc-cEEEEEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999998875543221 356899999999999
Q ss_pred ccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHHHH
Q 002128 266 ERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSR 345 (962)
Q Consensus 266 ER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eETl 345 (962)
|+..+.+..+.+++|+..||+||.+|++||.+|+.+++..|||||+||||+||+++|||+++|+||+||+|...+++||+
T Consensus 239 e~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl 318 (328)
T cd00106 239 ERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETL 318 (328)
T ss_pred CcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHH
Confidence 99999999999999999999999999999999998654579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 002128 346 NTLFFATRAK 355 (962)
Q Consensus 346 sTLrFAsRAk 355 (962)
+||+||+|||
T Consensus 319 ~tL~~a~r~~ 328 (328)
T cd00106 319 STLRFASRAK 328 (328)
T ss_pred HHHHHHHhcC
Confidence 9999999986
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.1e-66 Score=578.68 Aligned_cols=317 Identities=41% Similarity=0.621 Sum_probs=278.7
Q ss_pred ecCCCChhhhhcCCceEEEecCC-cEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEE
Q 002128 41 RLRPLNKREQLAKDQVAWDCVDD-HTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFA 119 (962)
Q Consensus 41 RVRPl~~~E~~~~~~~~v~~~~~-~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfA 119 (962)
||||+++.|...+....+.+.+. ..................|.||+||+++++|++||+.++.|+|+++++|+|+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999999998888776665431 11111111122233467899999999999999999999999999999999999999
Q ss_pred eccCCCCCcccccC--------CchHHHHHHHHHHhcCCC---CceEEEeeeEEEecccccccccCCC---CCcceeeeC
Q 002128 120 YGQTSSGKTYTMRG--------ITEKAVVDIYNHIMNTPE---RDFTIKISGLEIYNENVRDLLNSES---GRNLKLLDD 185 (962)
Q Consensus 120 YGqTGSGKTyTM~G--------ii~ral~dLF~~i~~~~~---~~f~V~vS~lEIYnE~V~DLL~~~~---~~~L~i~ed 185 (962)
||+|||||||||+| |+|+++.+||..+..... ..|.|+|||+|||||+|+|||++.. ..++.++++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 99999999999987 799999999999987665 4899999999999999999999873 357999999
Q ss_pred CCCC-eEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcc-eeEEEEEEEEecC
Q 002128 186 PEKG-TVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCV-RSFVASLNFVDLA 263 (962)
Q Consensus 186 ~~~g-~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~-~~~~skL~fVDLA 263 (962)
+..| +++.|++++.|.+++++..+|..|..+|.++.|.+|..|||||+||+|+|.+......... ....|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 9877 9999999999999999999999999999999999999999999999999998866554432 2578999999999
Q ss_pred CCcccccccc-chhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchH
Q 002128 264 GSERASQTHA-DGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFE 342 (962)
Q Consensus 264 GSER~~kt~~-~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~e 342 (962)
|+|+..+.++ .+.+++|+..||+||.+|++||.+|+.+.+..|||||+||||+||+|+|||||+|+||+||||...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 9999998886 488899999999999999999999998655789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 002128 343 QSRNTLFFATRAKEV 357 (962)
Q Consensus 343 ETlsTLrFAsRAk~I 357 (962)
||++||+||.+||+|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999987
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6e-65 Score=571.13 Aligned_cols=325 Identities=35% Similarity=0.518 Sum_probs=289.1
Q ss_pred CCCCCCCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCC----CCCCCceeecceecCCCCchhHHHhhchH
Q 002128 28 GPKPREEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHE----RVAQPSSFSFDKVFGPSCLTETVYEEGVK 103 (962)
Q Consensus 28 ~~~~~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~----~~~~~~~F~FD~VF~~~asQeeVy~~~v~ 103 (962)
+....+.+|.|+||-||++.+|....+.-++.++.++++++..+... ..-....|.||++||..++++.||..+++
T Consensus 202 ~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~ 281 (676)
T KOG0246|consen 202 GDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAK 281 (676)
T ss_pred CCCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhh
Confidence 45667889999999999999999888888888878887777655321 11235689999999999999999999999
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc------------cCCchHHHHHHHHHHhcCC--CCceEEEeeeEEEeccccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM------------RGITEKAVVDIYNHIMNTP--ERDFTIKISGLEIYNENVR 169 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM------------~Gii~ral~dLF~~i~~~~--~~~f~V~vS~lEIYnE~V~ 169 (962)
|||..+|+|.-+|+|||||||||||||| .||.-.+..|+|..+.... ..++.|++||||||+.+||
T Consensus 282 PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvf 361 (676)
T KOG0246|consen 282 PLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVY 361 (676)
T ss_pred HHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchh
Confidence 9999999999999999999999999999 2788889999999886543 3478999999999999999
Q ss_pred ccccCCCCCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCc
Q 002128 170 DLLNSESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDC 249 (962)
Q Consensus 170 DLL~~~~~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~ 249 (962)
|||+.. +.|++++|.+..+.|.||.+..|.+.++++.+|..|++-|+.+.|..|..|||||+||+|.+....
T Consensus 362 DLL~~k--~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~------ 433 (676)
T KOG0246|consen 362 DLLNDK--KKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG------ 433 (676)
T ss_pred hhhccc--cceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC------
Confidence 999873 489999999999999999999999999999999999999999999999999999999999986541
Q ss_pred ceeEEEEEEEEecCCCccccccc-cchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCC-CCc
Q 002128 250 VRSFVASLNFVDLAGSERASQTH-ADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGG-NAR 327 (962)
Q Consensus 250 ~~~~~skL~fVDLAGSER~~kt~-~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGG-Nsk 327 (962)
.....|++.||||||+||...+. ++.++..||+.||+||+||..||+||.. .+.|+|||.||||.+|+|||=| |++
T Consensus 434 ~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~--nk~H~PFR~SKLTqVLRDSFIGenSr 511 (676)
T KOG0246|consen 434 EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR--NKSHLPFRGSKLTQVLRDSFIGENSR 511 (676)
T ss_pred cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcC--CCCCCCchhhhHHHHHHHhhcCCCCc
Confidence 13568999999999999987664 5566777999999999999999999965 5679999999999999999977 999
Q ss_pred cceeeccCCCCcchHHHHHHHHHHHHhhccccccc
Q 002128 328 TAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQ 362 (962)
Q Consensus 328 T~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~ 362 (962)
|+||+||||.....+.||||||||.|+|+......
T Consensus 512 TcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 512 TCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred eEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999865443
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-64 Score=597.27 Aligned_cols=366 Identities=37% Similarity=0.517 Sum_probs=315.8
Q ss_pred cCCCChhhhhcCCceEEEecC-CcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEe
Q 002128 42 LRPLNKREQLAKDQVAWDCVD-DHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAY 120 (962)
Q Consensus 42 VRPl~~~E~~~~~~~~v~~~~-~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAY 120 (962)
|||+...|...+...++.+.. ...|.+ +...+|+||+||+....|.++|+.+|.|+++.++.|||+|++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i--------g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI--------GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee--------cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 699999998888765554222 223332 23468999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccc----------cCCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCCCC-CcceeeeCCCCC
Q 002128 121 GQTSSGKTYTM----------RGITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESG-RNLKLLDDPEKG 189 (962)
Q Consensus 121 GqTGSGKTyTM----------~Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~-~~L~i~ed~~~g 189 (962)
||||||||||| .|++|+++..+|..+.......|.|.|||+|||+|.|+|||.+... .++++.+ +.++
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~ 151 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGE 151 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCc
Confidence 99999999999 3999999999999999888889999999999999999999985443 2456666 7788
Q ss_pred eEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecCCCcccc
Q 002128 190 TVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAGSERAS 269 (962)
Q Consensus 190 ~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLAGSER~~ 269 (962)
+.+.|+++..|.+..++...|..|...|++++|+||..|||||+||++++++.... .....+.++|+|||||||||.+
T Consensus 152 it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~--~~~s~~~sKlhlVDLAGSER~k 229 (913)
T KOG0244|consen 152 ITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKL--SKRSSFCSKLHLVDLAGSERVK 229 (913)
T ss_pred eEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHh--hccchhhhhhheeecccccccc
Confidence 99999999999999999999999999999999999999999999999999775332 2334677999999999999999
Q ss_pred ccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHHHHHHHH
Q 002128 270 QTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLF 349 (962)
Q Consensus 270 kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eETlsTLr 349 (962)
+|++.|.|++||.+||.+|++||+||.||...++.+||||||||||||||++||||+.|+||+||||+..+++||++||+
T Consensus 230 kT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ 309 (913)
T KOG0244|consen 230 KTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLR 309 (913)
T ss_pred ccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHH
Confidence 99999999999999999999999999999988788899999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 350 FATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSE 420 (962)
Q Consensus 350 FAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~e 420 (962)
||.||+.|+|+|.+|.. .....+..|+.+++.|+.+|...... +....|+.+..++..+...++.+..+
T Consensus 310 ya~Rak~iknk~vvN~d-~~~~~~~~lK~ql~~l~~ell~~~~~-~~~~ei~sl~~e~~~l~~~~d~~~~e 378 (913)
T KOG0244|consen 310 YADRAKQIKNKPVVNQD-PKSFEMLKLKAQLEPLQVELLSKAGD-ELDAEINSLPFENVTLEETLDALLQE 378 (913)
T ss_pred HhhHHHHhccccccccc-HHHHHHHHHHHHHHHHHHHHHhhccc-cchhHHhhhhhhhhhhhhhHHHHhcc
Confidence 99999999999999994 44567889999999999998766411 23334555555555555555544443
No 28
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.6e-62 Score=560.92 Aligned_cols=334 Identities=34% Similarity=0.519 Sum_probs=291.7
Q ss_pred CCCCCCCCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCC-------CCCCCCceeecceecCCCCchhHHHh
Q 002128 27 GGPKPREEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPH-------ERVAQPSSFSFDKVFGPSCLTETVYE 99 (962)
Q Consensus 27 ~~~~~~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~-------~~~~~~~~F~FD~VF~~~asQeeVy~ 99 (962)
+.+-.....|.|+||+||+.+ ..++...+.+.++.+|++..|.. ........|.|-+||+|+++|.+||+
T Consensus 24 ~~S~~~~d~v~v~~rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~ 100 (809)
T KOG0247|consen 24 GASCESKDPVLVVCRVRPLSD---ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFD 100 (809)
T ss_pred ccchhhhcchheeEeecCCCC---CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHH
Confidence 333444568999999999986 23455667788999999885532 12223468999999999999999999
Q ss_pred hchHHHHHHHhcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhc-------------------------
Q 002128 100 EGVKNVALSALMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMN------------------------- 148 (962)
Q Consensus 100 ~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~------------------------- 148 (962)
.++.|+|.+++.|.|..+|+||.|||||||||. ||+||++.-||+.|..
T Consensus 101 ~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~al 180 (809)
T KOG0247|consen 101 TTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDAL 180 (809)
T ss_pred HHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999994 7999999999987653
Q ss_pred ---------------C-------------------------CCCceEEEeeeEEEecccccccccCCCCC----c-ceee
Q 002128 149 ---------------T-------------------------PERDFTIKISGLEIYNENVRDLLNSESGR----N-LKLL 183 (962)
Q Consensus 149 ---------------~-------------------------~~~~f~V~vS~lEIYnE~V~DLL~~~~~~----~-L~i~ 183 (962)
. .+..|.|+|||+|||||.|||||.+.+.. . ..++
T Consensus 181 L~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~ 260 (809)
T KOG0247|consen 181 LQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLR 260 (809)
T ss_pred HhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhh
Confidence 0 11247999999999999999999876431 2 5678
Q ss_pred eCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecC
Q 002128 184 DDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263 (962)
Q Consensus 184 ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLA 263 (962)
+|.++..+|.|++++.|.+.+|+..+|..|.++|++++|.+|..|||||+||+|.|.+..+.. +.....+|.|.|||||
T Consensus 261 ~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~-~s~~i~vSqlsLvDLA 339 (809)
T KOG0247|consen 261 EDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ-DSNQITVSQLSLVDLA 339 (809)
T ss_pred hccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc-ccCceeEEeeeeeecc
Confidence 899999999999999999999999999999999999999999999999999999998876652 3345678999999999
Q ss_pred CCccccccccchhhhHhhhhccccHHHHHHHHHHhccCC---CCCCccccCChhhhhhhccCCCCCccceeeccCCCCcc
Q 002128 264 GSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGK---RSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSH 340 (962)
Q Consensus 264 GSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~---k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~ 340 (962)
||||..++.+.|.||+|+++||.||++||+||.+|...+ ...+|||||||||++++.+|.|..+.+||+||+|...+
T Consensus 340 GSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~ 419 (809)
T KOG0247|consen 340 GSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAED 419 (809)
T ss_pred cchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhh
Confidence 999999999999999999999999999999999997533 34689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccccccccc
Q 002128 341 FEQSRNTLFFATRAKEVTNNAQVN 364 (962)
Q Consensus 341 ~eETlsTLrFAsRAk~Ikn~~~vN 364 (962)
|+|+++.|+||.-|+.|.+...++
T Consensus 420 YdEnl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 420 YDENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHHHHHHHHhcccccccCccc
Confidence 999999999999999998766664
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-57 Score=536.78 Aligned_cols=319 Identities=43% Similarity=0.660 Sum_probs=281.8
Q ss_pred CCCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhc
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALM 111 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~ 111 (962)
....++++++..|-...+ ..+...++..+.... .....|.||+||++.++|++||+..++|++++++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~------~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~ 87 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEK------SKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLL 87 (568)
T ss_pred eecCceEEEeecCCCcch------heeeccccccccccc------ccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHh
Confidence 456789999999954332 112222222222111 11467999999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCcccc------cCCchHHHHHHHHHHhcCC-CCceEEEeeeEEEecccccccccCCCCCcceeee
Q 002128 112 GINATIFAYGQTSSGKTYTM------RGITEKAVVDIYNHIMNTP-ERDFTIKISGLEIYNENVRDLLNSESGRNLKLLD 184 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM------~Gii~ral~dLF~~i~~~~-~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~i~e 184 (962)
|||||||||||||||||||| .|++|+++.+||+.+.... +..|.|.+||+|||||+++|||.+... .+.+++
T Consensus 88 g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~-~~~~~~ 166 (568)
T COG5059 88 GYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEE-SLNIRE 166 (568)
T ss_pred cccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccc-cccccc
Confidence 99999999999999999999 4799999999999987654 467999999999999999999998765 477899
Q ss_pred CCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecCC
Q 002128 185 DPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAG 264 (962)
Q Consensus 185 d~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLAG 264 (962)
+...++++.++++..+.++++++.+|..|..+|+++.|.+|..|||||+||++++.+....... ...++|+||||||
T Consensus 167 ~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~---~~~~~l~lvDLag 243 (568)
T COG5059 167 DSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGT---SETSKLSLVDLAG 243 (568)
T ss_pred cCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccc---eecceEEEEeecc
Confidence 9999999999999999999999999999999999999999999999999999999887654433 2237899999999
Q ss_pred CccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHHH
Q 002128 265 SERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQS 344 (962)
Q Consensus 265 SER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eET 344 (962)
||++..++..+.|++|+..||+||++||+||.+|...++..|||||+|||||+|+++|||+++|+|||||+|...++++|
T Consensus 244 SE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et 323 (568)
T COG5059 244 SERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEET 323 (568)
T ss_pred ccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHH
Confidence 99999999999999999999999999999999998756788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccccc
Q 002128 345 RNTLFFATRAKEVTNNAQVNMV 366 (962)
Q Consensus 345 lsTLrFAsRAk~Ikn~~~vN~~ 366 (962)
.+||+||.||+.|++.+..|..
T Consensus 324 ~~tL~~a~rak~I~~~~~~~~~ 345 (568)
T COG5059 324 INTLKFASRAKSIKNKIQVNSS 345 (568)
T ss_pred HHHHHHHHHHhhcCCcccccCc
Confidence 9999999999999999999963
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.3e-46 Score=384.96 Aligned_cols=173 Identities=47% Similarity=0.672 Sum_probs=161.0
Q ss_pred HHhhchHHHHHHHhcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccc
Q 002128 97 VYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRD 170 (962)
Q Consensus 97 Vy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~D 170 (962)
||+.++ |+|..+++|||+||||||||||||||||+ |++|+++.+
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999988 99999999999999999999999999997 788887766
Q ss_pred cccCCCCCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcc
Q 002128 171 LLNSESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCV 250 (962)
Q Consensus 171 LL~~~~~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~ 250 (962)
+..++..|.++|.++.|.+|..|||||+||+|+|.+.........
T Consensus 58 -----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~ 102 (186)
T cd01363 58 -----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATE 102 (186)
T ss_pred -----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCcc
Confidence 788999999999999999999999999999999988766554444
Q ss_pred eeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccce
Q 002128 251 RSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAI 330 (962)
Q Consensus 251 ~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~m 330 (962)
....++|+||||||||+..+++..+.+++|++.||+||.+|++||.+|+.+ ..||||||||||+||||+|||||+|+|
T Consensus 103 ~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~--~~~vpyr~SkLT~lL~~~L~g~~~t~~ 180 (186)
T cd01363 103 QPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAER--DSHVPYRESKLTRLLQDSLGGNSRTLM 180 (186)
T ss_pred ceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcC--CCCCCCcccHHHHHHHHhcCCCCeEEE
Confidence 567899999999999999999999999999999999999999999999864 569999999999999999999999999
Q ss_pred eeccCC
Q 002128 331 ICTLSP 336 (962)
Q Consensus 331 I~tISP 336 (962)
|+||||
T Consensus 181 i~~vsP 186 (186)
T cd01363 181 VACISP 186 (186)
T ss_pred EEEeCc
Confidence 999998
No 31
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.79 E-value=1.8e-07 Score=112.30 Aligned_cols=251 Identities=22% Similarity=0.230 Sum_probs=144.9
Q ss_pred CCeEEEEecCCCChhhhhcCCceEE---EecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHh
Q 002128 34 EKIVVTVRLRPLNKREQLAKDQVAW---DCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSAL 110 (962)
Q Consensus 34 e~IrV~VRVRPl~~~E~~~~~~~~v---~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl 110 (962)
.+++|+|+|+|.............+ ...-.+++..... .........|.||.+|.+...+..++.. ...+++..+
T Consensus 305 ~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~ 382 (568)
T COG5059 305 CNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-SDSSREIEEIKFDLSEDRSEIEILVFRE-QSQLSQSSL 382 (568)
T ss_pred ccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-CcchHHHHHHHhhhhhhhhhhhhHHHHH-HHhhhhhhh
Confidence 3899999999988443111100000 0000111221110 1112224579999999999999888876 667778788
Q ss_pred cCCceeEEEeccCCCCCccccc----CCchHHHHHHHHHHhcCCCC--ceEEEeeeEEEecccccccccCCCCCccee--
Q 002128 111 MGINATIFAYGQTSSGKTYTMR----GITEKAVVDIYNHIMNTPER--DFTIKISGLEIYNENVRDLLNSESGRNLKL-- 182 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~----Gii~ral~dLF~~i~~~~~~--~f~V~vS~lEIYnE~V~DLL~~~~~~~L~i-- 182 (962)
+| +++||++++|+++||. ++....+..+|..+...... .+...+-+.++|-....++.......+...
T Consensus 383 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 458 (568)
T COG5059 383 SG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIH 458 (568)
T ss_pred hh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88 9999999999999994 44445556666655433222 233333444454222222222111101000
Q ss_pred eeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEec
Q 002128 183 LDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDL 262 (962)
Q Consensus 183 ~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDL 262 (962)
.........+..++. ......+.... ..+...+..+.+..|..++++|.+|+.......... ... . ++.|||
T Consensus 459 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~----~~~-~-~n~~~~ 530 (568)
T COG5059 459 KLNKLRHDLSSLLSS-IPEETSDRVES-EKASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSST----KEL-S-LNQVDL 530 (568)
T ss_pred HHHHHHHHHHHhhhh-cchhhhhhhhh-hhhccchhhcccchhhhhcccchhhhhcccchhhhh----HHH-H-hhhhhc
Confidence 000000000000000 00011111111 145677888899999999999999988764321111 011 1 799999
Q ss_pred CCCccccccccchhhhHhhhhccccHHHHHHHHHHhc
Q 002128 263 AGSERASQTHADGARLREGCHINLSLMTLTTVIRKLS 299 (962)
Q Consensus 263 AGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs 299 (962)
||+||. -....|.++++...+|++|..++.+|.++.
T Consensus 531 ~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 531 AGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred cccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 999999 888999999999999999999999998763
No 32
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.026 Score=66.78 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=60.9
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCchH-------------HHHHHHHHH
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEK-------------AVVDIYNHI 146 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~r-------------al~dLF~~i 146 (962)
..|....-|.|.-+|-. ++..+++.+-.|.-.-+ -.|.|||||||||..++.+ ...+||+..
T Consensus 3 ~~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 35777777888888864 45567777767755544 4699999999999655432 256777766
Q ss_pred hc-CCCCceEEEeeeEEEeccccc
Q 002128 147 MN-TPERDFTIKISGLEIYNENVR 169 (962)
Q Consensus 147 ~~-~~~~~f~V~vS~lEIYnE~V~ 169 (962)
.. -++..+...|||+.-|.-..|
T Consensus 78 k~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHhCcCcceEEEeeeccccCcccc
Confidence 54 366678889999999986544
No 33
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.53 E-value=0.035 Score=59.40 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=31.9
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
..|+||.-+.. ..++.+|.. +..+...--..+|. +|-||++|+||||-|.+
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 46999997643 345666654 55555542223444 78899999999998644
No 34
>PRK06893 DNA replication initiation factor; Validated
Probab=91.38 E-value=0.13 Score=55.38 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=34.8
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCc
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii 135 (962)
+..++||..+.... ..- +..+...+-.++|..++-||++|+||||.+.++.
T Consensus 10 ~~~~~fd~f~~~~~-~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~ 60 (229)
T PRK06893 10 IDDETLDNFYADNN-LLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVS 60 (229)
T ss_pred CCcccccccccCCh-HHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHH
Confidence 45789999996543 221 2222333445778889999999999999986543
No 35
>PRK06620 hypothetical protein; Validated
Probab=88.99 E-value=0.24 Score=52.97 Aligned_cols=50 Identities=32% Similarity=0.485 Sum_probs=34.0
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCc---eeEEEeccCCCCCccccc
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGIN---ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N---~tIfAYGqTGSGKTyTM~ 132 (962)
...|+||..+...++ ...|.. +..+.+. -|+| -.++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg~~N-~~a~~~-~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSSSN-DQAYNI-IKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEecccH-HHHHHH-HHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 357899997755544 456765 4444331 1444 358999999999999985
No 36
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.64 E-value=0.24 Score=55.64 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=29.2
Q ss_pred chHHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 101 GVKNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 101 ~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.+.+++..+++--++.|+.-|+||||||+||-
T Consensus 112 glP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 112 GLPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 56788999999999999999999999999983
No 37
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.35 E-value=0.3 Score=59.78 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=36.0
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gi 134 (962)
...|+||..+-... +..+|. .+..++...-.+||. ||-||.+|+||||-+..+
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~AI 334 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHAI 334 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHHH
Confidence 35699988654333 444554 355555554456776 899999999999998553
No 38
>PRK12377 putative replication protein; Provisional
Probab=88.29 E-value=0.32 Score=53.35 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=37.9
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii 135 (962)
..+||........|..++.. +..++..+..+. ..++-||++|+||||.+.++.
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AIa 122 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAAIG 122 (248)
T ss_pred cCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHH
Confidence 34677655555566667764 677777776654 468889999999999986543
No 39
>PRK06526 transposase; Provisional
Probab=87.89 E-value=0.27 Score=54.02 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=28.4
Q ss_pred cCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCch
Q 002128 88 FGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITE 136 (962)
Q Consensus 88 F~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~ 136 (962)
+.+..++..+..-...+.+. .+.| |+.||++|+||||.+.++..
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHHHH
Confidence 44555555555443444443 3444 78999999999999976543
No 40
>PRK08116 hypothetical protein; Validated
Probab=87.19 E-value=0.32 Score=53.81 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=36.8
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhc--CCceeEEEeccCCCCCcccccC
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALM--GINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~--G~N~tIfAYGqTGSGKTyTM~G 133 (962)
..++||... .+..+...|.. +...++.+.. +.|..++-||.+|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 357888654 44555666654 6777776653 3455699999999999999855
No 41
>PRK06835 DNA replication protein DnaC; Validated
Probab=86.28 E-value=0.3 Score=55.73 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=28.6
Q ss_pred HHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCchH
Q 002128 96 TVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEK 137 (962)
Q Consensus 96 eVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~r 137 (962)
.+++. +...++.+-.+. -.|+-||++|+||||.+.++...
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~~ 206 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAKE 206 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHH
Confidence 45543 556777776554 56999999999999988665443
No 42
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.24 E-value=0.54 Score=50.77 Aligned_cols=50 Identities=10% Similarity=0.285 Sum_probs=32.9
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gi 134 (962)
+..|+||..+.. .+..++.. +..++. ......++-||++|+||||.+.++
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a~ 65 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHAA 65 (235)
T ss_pred CCcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHHH
Confidence 356889876644 45556654 333332 222347899999999999998653
No 43
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.09 E-value=0.42 Score=56.55 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=34.7
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
...|+||..+-. .++...|.. +..++.+ -..||. +|-||++|+||||.+..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 457999987743 345556654 4444443 123675 99999999999999854
No 44
>PRK07952 DNA replication protein DnaC; Validated
Probab=86.05 E-value=0.51 Score=51.70 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=35.8
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii 135 (962)
..+||........|..++.. +...++.+..|. ..++-||.+|+||||.+.++.
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~aia 120 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAAIC 120 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHHHH
Confidence 46777654344456667665 555666654443 368899999999999986543
No 45
>PRK09087 hypothetical protein; Validated
Probab=85.76 E-value=0.47 Score=51.14 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=32.4
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
+..|+||..+...++ ..+|.. +.....-.+..++-||++||||||-+.
T Consensus 15 ~~~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 346899998854444 346663 333222235568999999999999985
No 46
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.61 E-value=0.48 Score=55.06 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=33.3
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gi 134 (962)
...|+||...- ...+...|.. +..+...--..+| .++-||++|+||||.+..+
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ai 156 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHAI 156 (405)
T ss_pred CCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHHH
Confidence 45789998442 2345556653 4445443211244 4788999999999998543
No 47
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.11 E-value=0.52 Score=55.71 Aligned_cols=53 Identities=23% Similarity=0.277 Sum_probs=34.0
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gi 134 (962)
...|+||..... ..+...|.. +..+...--..+| .++-||++|+||||.+..+
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ai 168 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHAI 168 (450)
T ss_pred CCCCcccccccC-CCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHHH
Confidence 457899884422 345556654 4555443222345 4788999999999998553
No 48
>PRK05642 DNA replication initiation factor; Validated
Probab=84.37 E-value=0.74 Score=49.74 Aligned_cols=49 Identities=10% Similarity=0.245 Sum_probs=30.4
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhc---CC-ceeEEEeccCCCCCcccccCC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALM---GI-NATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~---G~-N~tIfAYGqTGSGKTyTM~Gi 134 (962)
...|+||.-+... +..+ ...+....+ +. ...++-||.+|+||||-+.++
T Consensus 13 ~~~~tfdnF~~~~--~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~ 65 (234)
T PRK05642 13 RDDATFANYYPGA--NAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAA 65 (234)
T ss_pred CCcccccccCcCC--hHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHH
Confidence 3468999887332 2223 333333322 22 246889999999999998553
No 49
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=83.97 E-value=1.5 Score=50.76 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=30.5
Q ss_pred HHHHhcCCc-eeEEEeccCCCCCcccccCCchHHHHHHHHHHhcCCCCceEEEeeeEEE
Q 002128 106 ALSALMGIN-ATIFAYGQTSSGKTYTMRGITEKAVVDIYNHIMNTPERDFTIKISGLEI 163 (962)
Q Consensus 106 V~svl~G~N-~tIfAYGqTGSGKTyTM~Gii~ral~dLF~~i~~~~~~~f~V~vS~lEI 163 (962)
+..++.|.- ..++.||.||+|||.|+ ..+++.+.........++|-+.++
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~--------~~v~~~l~~~~~~~~~~yINc~~~ 83 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV--------KFVMEELEESSANVEVVYINCLEL 83 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH--------HHHHHHHHhhhccCceEEEeeeeC
Confidence 444454443 34999999999999986 445555544433332455555554
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.25 E-value=0.91 Score=47.76 Aligned_cols=49 Identities=16% Similarity=0.375 Sum_probs=33.0
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
+..|+||..... .+..+++. ++.++ ..+....|+-||++|+||||.+..
T Consensus 9 ~~~~~~~~~~~~--~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 9 PDDPTFDNFYAG--GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCchhhcCcCcC--CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHHH
Confidence 356888887732 44455554 33332 245677899999999999999854
No 51
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.91 E-value=0.76 Score=54.60 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=32.8
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
.|+||..+... +++..|.. +..++..--..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999866444 44556643 5555432111244 488999999999999844
No 52
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=82.20 E-value=1.3 Score=54.94 Aligned_cols=83 Identities=22% Similarity=0.317 Sum_probs=55.6
Q ss_pred eecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCch-------------HHHHHHHHHHhc
Q 002128 82 FSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITE-------------KAVVDIYNHIMN 148 (962)
Q Consensus 82 F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~-------------ral~dLF~~i~~ 148 (962)
|....=|.|.-.|...++. ++..+-.|.... ..+|.||||||+||..++. .....|++.+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4444557788888877765 555555664332 3789999999999965432 234566666544
Q ss_pred C-CCCceEEEeeeEEEeccccc
Q 002128 149 T-PERDFTIKISGLEIYNENVR 169 (962)
Q Consensus 149 ~-~~~~f~V~vS~lEIYnE~V~ 169 (962)
- ++..+...|||+..|.-..|
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 3 44457788999999986654
No 53
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=81.81 E-value=0.63 Score=46.41 Aligned_cols=30 Identities=20% Similarity=0.096 Sum_probs=20.4
Q ss_pred HHHHHHhcC-CceeEEEeccCCCCCcccccC
Q 002128 104 NVALSALMG-INATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 104 plV~svl~G-~N~tIfAYGqTGSGKTyTM~G 133 (962)
.++..+-.+ .+..++..++||||||++|..
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 344444443 355566778999999999975
No 54
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.58 E-value=0.87 Score=54.35 Aligned_cols=32 Identities=31% Similarity=0.249 Sum_probs=26.7
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
-...+..++..-++-|+.-|+||||||.||..
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 44456677888899999999999999999943
No 55
>PRK08181 transposase; Validated
Probab=81.27 E-value=1.1 Score=49.86 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=20.0
Q ss_pred cCCceeEEEeccCCCCCcccccCCchHH
Q 002128 111 MGINATIFAYGQTSSGKTYTMRGITEKA 138 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~Gii~ra 138 (962)
.|.| |+-||++|+||||-+.++...+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHHHH
Confidence 4555 8999999999999997654433
No 56
>PRK08727 hypothetical protein; Validated
Probab=81.25 E-value=0.85 Score=49.22 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=29.2
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCC-ceeEEEeccCCCCCcccccCC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGI-NATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~-N~tIfAYGqTGSGKTyTM~Gi 134 (962)
+..|+||.-+...++ .... +.. +..|. .-.|+-||++|+||||.+..+
T Consensus 13 ~~~~~f~~f~~~~~n---~~~~-~~~----~~~~~~~~~l~l~G~~G~GKThL~~a~ 61 (233)
T PRK08727 13 PSDQRFDSYIAAPDG---LLAQ-LQA----LAAGQSSDWLYLSGPAGTGKTHLALAL 61 (233)
T ss_pred CCcCChhhccCCcHH---HHHH-HHH----HHhccCCCeEEEECCCCCCHHHHHHHH
Confidence 356889987644332 2221 112 22233 235999999999999998554
No 57
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.17 E-value=1.3 Score=50.36 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=19.7
Q ss_pred HHHHhc-CCceeEEEeccCCCCCcccc
Q 002128 106 ALSALM-GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~-G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++. +....++-||++|+|||+++
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 334443 45568999999999999986
No 58
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.05 E-value=1.3 Score=50.85 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=23.9
Q ss_pred chhHHHhhchHHHHHHHh-cCCceeEEEeccCCCCCcccc
Q 002128 93 LTETVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 93 sQeeVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM 131 (962)
.-++-++. +...+..++ .+....++-||++|+|||+++
T Consensus 34 ~Re~e~~~-l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 34 HREEQIEE-LAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 33444444 223333344 345566899999999999986
No 59
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=80.94 E-value=1.3 Score=46.98 Aligned_cols=51 Identities=14% Similarity=0.371 Sum_probs=32.1
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gi 134 (962)
...|+||.+++.. .+.++.. +..++.. .+.+..++-||.+|+||||.+..+
T Consensus 12 ~~~~~~d~f~~~~--~~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ai 62 (227)
T PRK08903 12 PPPPTFDNFVAGE--NAELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQAL 62 (227)
T ss_pred CChhhhcccccCC--cHHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHHHH
Confidence 3568999988322 2333332 4443331 234557899999999999987543
No 60
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.30 E-value=4.8 Score=43.25 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=34.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 367 VSDKQLVKHLQKEVARLEAELRTPDPSR-----EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQE 430 (962)
Q Consensus 367 ~~~~~li~~LqkEi~~Le~eL~~~~~~~-----~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~ 430 (962)
++....+.++++|++.|+++|...+... +...++.+.+.++.+|+.+++.++.+++.++.++..
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888887655332 112223334444444444444444444444444433
No 61
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=79.62 E-value=1.2 Score=52.19 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=31.8
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
...|+||..... .+++-.|.. +..+.+. -.+.---||-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv~g-~~N~~A~aa-~~~va~~-~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVG-PSNRLAYAA-AKAVAEN-PGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeC-CchHHHHHH-HHHHHhc-cCCcCCcEEEECCCCCCHHHHHH
Confidence 457999986643 344445542 3333322 22233458899999999999983
No 62
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=79.27 E-value=1.3 Score=41.50 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+...+.......++-+|++|+|||+.+
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334456888999999999876
No 63
>PRK08939 primosomal protein DnaI; Reviewed
Probab=78.87 E-value=1.1 Score=50.61 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=34.2
Q ss_pred eecceecCCCCchhHHHhhchHHHHHHHhcC-CceeEEEeccCCCCCcccccCCc
Q 002128 82 FSFDKVFGPSCLTETVYEEGVKNVALSALMG-INATIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 82 F~FD~VF~~~asQeeVy~~~v~plV~svl~G-~N~tIfAYGqTGSGKTyTM~Gii 135 (962)
.+||.+-.....+..++.. +...+.....| ..-.|+-||++|+||||-+.++.
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia 177 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIA 177 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4555543233355666664 46666665543 23469999999999999996543
No 64
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=78.17 E-value=1.7 Score=54.04 Aligned_cols=86 Identities=30% Similarity=0.553 Sum_probs=45.0
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCch--HHHHHHHHHHhcCCCCceEEE
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITE--KAVVDIYNHIMNTPERDFTIK 157 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~--ral~dLF~~i~~~~~~~f~V~ 157 (962)
..+.|+.+......+..-+.. +.+.+..++++++.. +|++|++.+.-. ..+..++..+.......-..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (670)
T KOG0239|consen 26 KRFELARVYSPSVGQPSLFSD-VQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTS- 95 (670)
T ss_pred cccCccccccccccccccCCc-cccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCCc-
Confidence 456677766554443333333 333444555555554 899999965321 22333333322211111111
Q ss_pred eeeEEEecccccccccCCC
Q 002128 158 ISGLEIYNENVRDLLNSES 176 (962)
Q Consensus 158 vS~lEIYnE~V~DLL~~~~ 176 (962)
..++.|++.+.|++..-.
T Consensus 96 -~~~~~~~~~~~~~~~~~q 113 (670)
T KOG0239|consen 96 -NVVEAYNERLRDLLSELQ 113 (670)
T ss_pred -hhHHHHHHHHhhhccccc
Confidence 167889999999986543
No 65
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=76.06 E-value=16 Score=46.00 Aligned_cols=69 Identities=25% Similarity=0.488 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc
Q 002128 370 KQLVKHLQKEVARLEAELRTPDPSREKDLKI---------QQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTSNPLD 439 (962)
Q Consensus 370 ~~li~~LqkEi~~Le~eL~~~~~~~~ke~~i---------q~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~~~l~ 439 (962)
...+..|..++.+|+++|...+.. +.+.+- ..+..++.+++.+.|++|.++.+|.+..+.+.+....+|
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~-E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LE 494 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQS-EQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLE 494 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668999999999998776643 222211 235566667777777777766666666555555555444
No 66
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=74.99 E-value=1.3 Score=41.21 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.7
Q ss_pred EEEeccCCCCCcccccC
Q 002128 117 IFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~G 133 (962)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57889999999999954
No 67
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=74.22 E-value=1.8 Score=52.91 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=23.9
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
.+..++..-++.|+..|+||||||+||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45566677788999999999999999844
No 68
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=73.39 E-value=12 Score=41.12 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=33.7
Q ss_pred eeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecCCCccc
Q 002128 199 TANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAGSERA 268 (962)
Q Consensus 199 ~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLAGSER~ 268 (962)
.+.+++++...+..+... ..+ + ...-|.-+++|.|..... -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~-~----~~~~s~~~i~l~i~~p~~----------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTG-T----NKGISPVPINLRVYSPHV----------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcC-C----CCcccCcceEEEEeCCCC----------CceEEEeCCCcccc
Confidence 345788888887755432 211 1 123566788888865421 35899999999643
No 69
>PRK06921 hypothetical protein; Provisional
Probab=73.10 E-value=2.3 Score=47.03 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=25.8
Q ss_pred HHHhhchHHHHHHHhc---CCceeEEEeccCCCCCcccccCCc
Q 002128 96 TVYEEGVKNVALSALM---GINATIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 96 eVy~~~v~plV~svl~---G~N~tIfAYGqTGSGKTyTM~Gii 135 (962)
.+|. .+...++++-. +....|+-||++|+||||.+..|.
T Consensus 97 ~~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia 138 (266)
T PRK06921 97 DAYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAA 138 (266)
T ss_pred HHHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHH
Confidence 3443 35556665532 234568899999999999986543
No 70
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=73.09 E-value=2.2 Score=46.94 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=36.3
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCchH
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEK 137 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~r 137 (962)
++|.|..+-.....+..+|.. +..++..+-.|. .++-||++|+||||-..+|.-.
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~--nl~l~G~~G~GKThLa~Ai~~~ 128 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALED-LASLVEFFERGE--NLVLLGPPGVGKTHLAIAIGNE 128 (254)
T ss_pred CCcccccccCCcchhHHHHHH-HHHHHHHhccCC--cEEEECCCCCcHHHHHHHHHHH
Confidence 445555444455567778876 666666655443 4577999999999998654333
No 71
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=72.85 E-value=4.1 Score=44.89 Aligned_cols=126 Identities=18% Similarity=0.298 Sum_probs=71.1
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCcee-EEEeccCCCCCcccccCCchHHHHHHHHHHhcCCCCceEEEe
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINAT-IFAYGQTSSGKTYTMRGITEKAVVDIYNHIMNTPERDFTIKI 158 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~t-IfAYGqTGSGKTyTM~Gii~ral~dLF~~i~~~~~~~f~V~v 158 (962)
....+|...+-+...+.+.+. ...++.|..+- ++-||..|+|||.++.++ +....... +
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlVkal--------l~~y~~~G-------L 81 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLVKAL--------LNEYADQG-------L 81 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHHHHH--------HHHHhhcC-------c
Confidence 345667777666555555544 36677887664 677999999999887443 32222221 5
Q ss_pred eeEEEecccccccc------cCCCCCcceeeeCCCCCeEecCceEEe-eCCHHHHHHHHHHHHHhhhhcccccCCCCCCc
Q 002128 159 SGLEIYNENVRDLL------NSESGRNLKLLDDPEKGTVVEKLVEET-ANNDQHLRHLISICEAQRQVGETALNDTSSRS 231 (962)
Q Consensus 159 S~lEIYnE~V~DLL------~~~~~~~L~i~ed~~~g~~V~gLte~~-V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRS 231 (962)
-.+||..+.+.||- ...+.+-+-. +.+|+-.. =.++..+..+|.-|...| ....-+..+|.|-
T Consensus 82 RlIev~k~~L~~l~~l~~~l~~~~~kFIlf---------~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRR 151 (249)
T PF05673_consen 82 RLIEVSKEDLGDLPELLDLLRDRPYKFILF---------CDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRR 151 (249)
T ss_pred eEEEECHHHhccHHHHHHHHhcCCCCEEEE---------ecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchh
Confidence 67888877766653 2222212222 23333111 123566667776555443 3444556677777
Q ss_pred ceEE
Q 002128 232 HQII 235 (962)
Q Consensus 232 H~If 235 (962)
|.|=
T Consensus 152 HLv~ 155 (249)
T PF05673_consen 152 HLVP 155 (249)
T ss_pred hccc
Confidence 7753
No 72
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=72.32 E-value=5.5 Score=46.76 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=33.7
Q ss_pred eeecceecCCCCchhHHHhhchHHHHH-HHhc--C--CceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVAL-SALM--G--INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~-svl~--G--~N~tIfAYGqTGSGKTyTM 131 (962)
.++|+.|-+.+.--+++-+.+..|+.. .++. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 467777777665555565554445442 2332 2 3456889999999999987
No 73
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=72.20 E-value=7.3 Score=45.58 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=48.8
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhc--C--CceeEEEeccCCCCCcccc-----------------------c
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALM--G--INATIFAYGQTSSGKTYTM-----------------------R 132 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~--G--~N~tIfAYGqTGSGKTyTM-----------------------~ 132 (962)
.++.||.+.+.----..+.+.++-.++.+++. | .---|.-||+.|+|||+.. .
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 35677887766666667777777777777774 2 3345778999999999985 1
Q ss_pred CCchHHHHHHHHHHhc
Q 002128 133 GITEKAVVDIYNHIMN 148 (962)
Q Consensus 133 Gii~ral~dLF~~i~~ 148 (962)
|-.++.+.++|.....
T Consensus 190 GEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 190 GEPGKLIRQRYREAAD 205 (413)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4445677788876643
No 74
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=71.56 E-value=2.8 Score=49.79 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=34.5
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHH--hcC--CceeEEEeccCCCCCcccccCC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSA--LMG--INATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~sv--l~G--~N~tIfAYGqTGSGKTyTM~Gi 134 (962)
...|+||..+-. .+++..|.. +..+.... ..| ||. +|-||++|+||||.+..+
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~Ai 161 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQAA 161 (445)
T ss_pred CccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHHH
Confidence 457999987643 345555543 55555433 223 443 678999999999998543
No 75
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=71.54 E-value=2.2 Score=42.23 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=19.4
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
++..+..|.| ++..|+||||||+..
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHH
Confidence 3445566766 778899999999987
No 76
>PRK10436 hypothetical protein; Provisional
Probab=70.69 E-value=2.2 Score=50.99 Aligned_cols=28 Identities=36% Similarity=0.315 Sum_probs=23.0
Q ss_pred HHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3555666778899999999999999984
No 77
>PF13245 AAA_19: Part of AAA domain
Probab=70.44 E-value=2.4 Score=38.22 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=17.5
Q ss_pred HHHHhcCCceeEEEeccCCCCCccccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
|...+. -+..++..|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444455 23334458999999999983
No 78
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=70.44 E-value=2.3 Score=51.07 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=23.2
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
.+..++..-++.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 44556667777899999999999999943
No 79
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=70.43 E-value=3.8 Score=47.08 Aligned_cols=27 Identities=30% Similarity=0.224 Sum_probs=20.6
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.++..++.+. +.|+-.|.||||||+++
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3444455555 77888999999999998
No 80
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=70.18 E-value=2 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=18.0
Q ss_pred ceeEEEeccCCCCCcccccCCchH
Q 002128 114 NATIFAYGQTSSGKTYTMRGITEK 137 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~Gii~r 137 (962)
.-.++-||++|+||||...++.-.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~ 70 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE 70 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH
Confidence 345899999999999998665443
No 81
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.02 E-value=1.5 Score=46.49 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=15.6
Q ss_pred EEEeccCCCCCcccccCCchHH
Q 002128 117 IFAYGQTSSGKTYTMRGITEKA 138 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~Gii~ra 138 (962)
+.-+|.||||||+|+.-++...
T Consensus 26 ~~I~G~TGsGKS~~~~~ll~~l 47 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVKVLLEEL 47 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999985444333
No 82
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=70.00 E-value=2.1 Score=46.82 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.6
Q ss_pred ceeEEEeccCCCCCcccc
Q 002128 114 NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM 131 (962)
.+.|+-.|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 566777899999999998
No 83
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=69.28 E-value=1.9 Score=39.82 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=15.9
Q ss_pred eeEEEeccCCCCCcccccC
Q 002128 115 ATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~G 133 (962)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4578899999999999843
No 84
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=69.24 E-value=1.6 Score=41.51 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=13.2
Q ss_pred ceeEEEeccCCCCCcccc
Q 002128 114 NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM 131 (962)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 357899999999999987
No 85
>PF12846 AAA_10: AAA-like domain
Probab=68.81 E-value=1.7 Score=46.98 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=16.5
Q ss_pred ceeEEEeccCCCCCcccccC
Q 002128 114 NATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~G 133 (962)
|.-++..|.||||||++|..
T Consensus 1 n~h~~i~G~tGsGKT~~~~~ 20 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN 20 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 45678899999999999843
No 86
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=68.51 E-value=6.3 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=18.3
Q ss_pred cCCceeEEEeccCCCCCcccccC
Q 002128 111 MGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
.|-+.+||-||++|+|||.|+.-
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVYS 800 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHHH
Confidence 34556788999999999999743
No 87
>PRK10865 protein disaggregation chaperone; Provisional
Probab=68.27 E-value=2.8e+02 Score=36.18 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=25.6
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCcccccCCchHHH
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTMRGITEKAV 139 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~ral 139 (962)
+..+++-+.......++-||++|+|||+...|+..+++
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 44444444444455567889999999999977655543
No 88
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=68.12 E-value=2.7 Score=48.06 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 103 KNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 103 ~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
.+.+..++.--.+.|+-.|+||||||+||..
T Consensus 111 ~~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 111 PPVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred CHHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 3455555544457789999999999999843
No 89
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=67.73 E-value=3.7 Score=45.80 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=26.7
Q ss_pred chHHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 101 GVKNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 101 ~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
-..+++..+.--.-+.|+-.|.|||||+.||-
T Consensus 114 ~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 114 KLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 35677777777778889999999999999993
No 90
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=67.69 E-value=4 Score=47.57 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=29.6
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHH-Hhc--C--CceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALS-ALM--G--INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~s-vl~--G--~N~tIfAYGqTGSGKTyTM 131 (962)
.+.||.|-+-+..-+++.+.+..|+... .+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 3556665555444444444433333321 222 2 2346899999999999886
No 91
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=67.41 E-value=3.6 Score=44.48 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=17.1
Q ss_pred hcCCceeEEEeccCCCCCcccc
Q 002128 110 LMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 110 l~G~N~tIfAYGqTGSGKTyTM 131 (962)
+......++-+|++|+|||+.+
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 3433556788999999999887
No 92
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=66.76 E-value=3.2 Score=48.26 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=19.9
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
+++.++. .++.|+..|+||||||+||..
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence 3333333 456788899999999999843
No 93
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=66.70 E-value=2.3 Score=44.65 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.9
Q ss_pred eeEEEeccCCCCCccccc
Q 002128 115 ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~ 132 (962)
+.|+-.|+||||||+++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 568889999999999984
No 94
>PRK09183 transposase/IS protein; Provisional
Probab=66.35 E-value=2.9 Score=46.07 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=27.0
Q ss_pred cceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCC
Q 002128 84 FDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 84 FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gi 134 (962)
||.-|.+..+...+..-..-.. +-.|.| |+-+|++|+||||.+.++
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHHH
Confidence 4444555555544443211111 224554 567999999999998654
No 95
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=65.79 E-value=4.2 Score=46.10 Aligned_cols=37 Identities=35% Similarity=0.382 Sum_probs=24.6
Q ss_pred hHHHhhchHHHHHHHhcC-CceeEEEeccCCCCCcccc
Q 002128 95 ETVYEEGVKNVALSALMG-INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 95 eeVy~~~v~plV~svl~G-~N~tIfAYGqTGSGKTyTM 131 (962)
+-++++.+-.++.+.+.+ .---.+-||+.|+|||.|.
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 344444444455555544 4445788999999999997
No 96
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=65.66 E-value=3.4 Score=47.82 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=19.6
Q ss_pred HhcCCceeEEEeccCCCCCcccccC
Q 002128 109 ALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
++.--.+.|+-.|+||||||.||..
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHHH
Confidence 3333468899999999999999843
No 97
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=65.25 E-value=8.5 Score=44.24 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=29.0
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHH-Hhc--CC--ceeEEEeccCCCCCccccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALS-ALM--GI--NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~s-vl~--G~--N~tIfAYGqTGSGKTyTM~ 132 (962)
.+.||.+.+-+.--+++.+.+..|+... .+. |. ...|+-||++|+|||+++.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 4556666555444444444333332221 111 22 3458999999999999874
No 98
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=64.55 E-value=3.6 Score=45.47 Aligned_cols=28 Identities=32% Similarity=0.285 Sum_probs=20.7
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
+..++..-.+.|+-.|.||||||.||..
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 3445554456788889999999999843
No 99
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.82 E-value=16 Score=44.75 Aligned_cols=62 Identities=31% Similarity=0.465 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002128 372 LVKHLQKEVARLEAELRTPDP----SREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQ 433 (962)
Q Consensus 372 li~~LqkEi~~Le~eL~~~~~----~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~ 433 (962)
.+.+|+++|..|+++|..... ..-++.+++.++.+|+.|++.+.+....+++|++++.+..+
T Consensus 444 ~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 444 ELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666655543322 12345667788888888888888888888888888877653
No 100
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=62.49 E-value=4 Score=42.91 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=19.7
Q ss_pred HHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.+..++...+..++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3445555554455668999999999983
No 101
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=62.11 E-value=17 Score=43.38 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=14.3
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999987
No 102
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=61.08 E-value=3.4 Score=42.73 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=20.6
Q ss_pred HHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 103 KNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 103 ~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..+...+-.|.+..++-||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 33444444566888999999999999987
No 103
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=59.83 E-value=4.7 Score=45.96 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=20.1
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
.++..++.+. ..|+-.|.||||||++|..
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~a 167 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVNA 167 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHHH
Confidence 4455555543 4566669999999988744
No 104
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=59.39 E-value=7.6 Score=43.35 Aligned_cols=36 Identities=19% Similarity=0.478 Sum_probs=25.9
Q ss_pred eeEEEeccCCCCCccccc-----------------------CCchHHHHHHHHHHhcCC
Q 002128 115 ATIFAYGQTSSGKTYTMR-----------------------GITEKAVVDIYNHIMNTP 150 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~-----------------------Gii~ral~dLF~~i~~~~ 150 (962)
-.|+-||++|+|||++-. |--.+-++++|....+..
T Consensus 152 knVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a 210 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA 210 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 468899999999999872 233456777887765543
No 105
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.10 E-value=23 Score=39.47 Aligned_cols=68 Identities=21% Similarity=0.333 Sum_probs=43.4
Q ss_pred ecceecCCCCchhHHHhhchHHHHHHHhc---CCc--eeEEEeccCCCCCcccc-----------------------cCC
Q 002128 83 SFDKVFGPSCLTETVYEEGVKNVALSALM---GIN--ATIFAYGQTSSGKTYTM-----------------------RGI 134 (962)
Q Consensus 83 ~FD~VF~~~asQeeVy~~~v~plV~svl~---G~N--~tIfAYGqTGSGKTyTM-----------------------~Gi 134 (962)
.+-.|=+-+..-++|-+.+--|+...-+- |++ -.|+.||+.|+|||-.. .|-
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylge 232 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhcc
Confidence 33444444444455665555555544331 444 35899999999998544 266
Q ss_pred chHHHHHHHHHHhcCC
Q 002128 135 TEKAVVDIYNHIMNTP 150 (962)
Q Consensus 135 i~ral~dLF~~i~~~~ 150 (962)
-||.+.++|....++.
T Consensus 233 gprmvrdvfrlakena 248 (408)
T KOG0727|consen 233 GPRMVRDVFRLAKENA 248 (408)
T ss_pred CcHHHHHHHHHHhccC
Confidence 7899999998776553
No 106
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.09 E-value=25 Score=40.96 Aligned_cols=115 Identities=17% Similarity=0.249 Sum_probs=61.9
Q ss_pred eEEEEecCCCChhhhhc-CCceEEEecCCcEEEEcCCCCCCCC-------CCceeecceecCCCCchhHHHhhchHHHHH
Q 002128 36 IVVTVRLRPLNKREQLA-KDQVAWDCVDDHTIVYKPQPHERVA-------QPSSFSFDKVFGPSCLTETVYEEGVKNVAL 107 (962)
Q Consensus 36 IrV~VRVRPl~~~E~~~-~~~~~v~~~~~~tiv~~~~~~~~~~-------~~~~F~FD~VF~~~asQeeVy~~~v~plV~ 107 (962)
-+.+|++.+.-+++... +..+.+.. +..+|+-.-++...+. ..-.-+|+.|=+-+..-++|.+.+-.|+..
T Consensus 95 ~~~vV~i~~~vd~~~L~pG~rVal~~-~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~ 173 (406)
T COG1222 95 PKFVVNILSFVDRDLLEPGMRVALNR-DSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKN 173 (406)
T ss_pred CeEEEeccCCcCHHHcCCCCEEEEcC-CcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccC
Confidence 36788888887766543 32222221 2233332222111110 011223344433333345566655555543
Q ss_pred HH-h--cCCce--eEEEeccCCCCCcccc-----------------------cCCchHHHHHHHHHHhcCCC
Q 002128 108 SA-L--MGINA--TIFAYGQTSSGKTYTM-----------------------RGITEKAVVDIYNHIMNTPE 151 (962)
Q Consensus 108 sv-l--~G~N~--tIfAYGqTGSGKTyTM-----------------------~Gii~ral~dLF~~i~~~~~ 151 (962)
-= | -|+.- .|+-||+.|+|||-.. .|--+|.++++|.....+..
T Consensus 174 PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaP 245 (406)
T COG1222 174 PELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAP 245 (406)
T ss_pred HHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCC
Confidence 32 2 25553 5899999999999765 25668899999988766543
No 107
>PF13479 AAA_24: AAA domain
Probab=58.55 E-value=4.6 Score=42.93 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.7
Q ss_pred ceeEEEeccCCCCCcccccC
Q 002128 114 NATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~G 133 (962)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45688999999999998843
No 108
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=58.31 E-value=3.6 Score=38.82 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.4
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999886
No 109
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=58.31 E-value=3.8 Score=43.37 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=14.7
Q ss_pred eEEEeccCCCCCccccc
Q 002128 116 TIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~ 132 (962)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46788999999999983
No 110
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=58.12 E-value=6.7 Score=43.81 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=26.4
Q ss_pred ecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 83 SFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 83 ~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
.||.+.+ ++++.+. +...+-.|....++-||++|+|||+++..
T Consensus 13 ~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 13 LLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred cHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 4676664 4444433 22222244434588899999999999844
No 111
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=57.96 E-value=5.2 Score=45.11 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=20.4
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.++..++.+ ...|+-.|.||||||++|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445555554 4567788999999999983
No 112
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=57.95 E-value=16 Score=46.66 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=51.6
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccccCCchHHHHHHHHHHhcC-----CCCceEEEeeeEEEec-ccccccccCCC--C
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTMRGITEKAVVDIYNHIMNT-----PERDFTIKISGLEIYN-ENVRDLLNSES--G 177 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM~Gii~ral~dLF~~i~~~-----~~~~f~V~vS~lEIYn-E~V~DLL~~~~--~ 177 (962)
+..+.+|.|+.|+| +||||||-+- +--+|+.+... ...-+.++||=+---| |..+-|-.+.. +
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAA-------fLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G 101 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAA-------FLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELG 101 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHH-------HHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcC
Confidence 44567999999998 9999998663 44444444433 1223556666444322 22122211111 1
Q ss_pred CcceeeeC----CCCCeEecCceEEeeCCHHHHHHHHHHH
Q 002128 178 RNLKLLDD----PEKGTVVEKLVEETANNDQHLRHLISIC 213 (962)
Q Consensus 178 ~~L~i~ed----~~~g~~V~gLte~~V~s~ee~~~lL~~g 213 (962)
-++.++.. ..+.-.+++--.+-+++++.+.-++...
T Consensus 102 ~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~ 141 (814)
T COG1201 102 IEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP 141 (814)
T ss_pred CccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH
Confidence 12222211 1123345555567788888877766433
No 113
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=57.44 E-value=6.6 Score=43.73 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=17.4
Q ss_pred cCC-ceeEEEeccCCCCCcccccC
Q 002128 111 MGI-NATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 111 ~G~-N~tIfAYGqTGSGKTyTM~G 133 (962)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 453 45667799999999999744
No 114
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=57.41 E-value=3.7 Score=41.26 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=13.2
Q ss_pred hcCCceeEEEeccCCCCCcccc
Q 002128 110 LMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 110 l~G~N~tIfAYGqTGSGKTyTM 131 (962)
..|....++-+|..|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 4566778999999999999986
No 115
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=56.67 E-value=3 Score=43.52 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=13.7
Q ss_pred eEEEeccCCCCCcccccC
Q 002128 116 TIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~G 133 (962)
-++.+|.||||||.++..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 578999999999999854
No 116
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=56.61 E-value=5.8 Score=41.00 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccccCCch
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTMRGITE 136 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM~Gii~ 136 (962)
|..++..-. ..+..|+.|||||+|+..++-
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~~~i~ 39 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLASIIA 39 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHHHHHH
Confidence 344443333 456689999999999865433
No 117
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=56.60 E-value=7.7 Score=44.76 Aligned_cols=37 Identities=14% Similarity=0.334 Sum_probs=27.2
Q ss_pred CCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 91 SCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 91 ~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..|+.+|+.++..+. ......+|.-|..|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 3568899988555443 234456788999999999987
No 118
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=56.17 E-value=45 Score=42.01 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=26.1
Q ss_pred HHHhhchHHHHHHHh-cCCceeEEEeccCCCCCcccc
Q 002128 96 TVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 96 eVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM 131 (962)
-||.- +.....+++ .|.|-||+.-|.+|||||.+.
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 68 HVFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 46653 444444444 599999999999999999986
No 119
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=56.05 E-value=8.4 Score=47.73 Aligned_cols=47 Identities=32% Similarity=0.571 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHhhhcCccceechhheeeecCCCCCce--EEEEeehhHH
Q 002128 780 FREQRQQIIELWDVCFVSIIHRTQFYLLFKGDPADQI--YMEVELRRLT 826 (962)
Q Consensus 780 f~~~~~~IieLW~~C~vslvHRtyFfLlfkgdp~d~i--ymeve~rrl~ 826 (962)
.++.|.+|-+||+.|++|--.|..|--.|-.+..+.+ -+|.|+-||.
T Consensus 288 I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 288 IEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp -----------------------------------------------HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 4778999999999999999999998877866655554 3889998874
No 120
>PF14282 FlxA: FlxA-like protein
Probab=54.99 E-value=48 Score=31.90 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 369 DKQLVKHLQKEVARLEAELRTPDPS-----REKDLKIQQMEMEIEELKRQRDVAQSE 420 (962)
Q Consensus 369 ~~~li~~LqkEi~~Le~eL~~~~~~-----~~ke~~iq~le~eieeLk~~~d~~q~e 420 (962)
....|+.|++.|..|..+|...... ..+..+++.|+.+|..|..++..++.+
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888999999988888654431 234555666666666666666555544
No 121
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=54.90 E-value=8.1 Score=38.16 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=16.6
Q ss_pred HHhcCCceeEEEeccCCCCCccccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.++.+. ..++..|+||||||.++.
T Consensus 19 ~~~~~~-~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 19 ALLSGL-RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred HHHcCC-CcEEEECCCCCchhHHHH
Confidence 344442 345677899999999874
No 122
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=54.87 E-value=5 Score=37.85 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.0
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999876
No 123
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=54.69 E-value=47 Score=42.12 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=25.5
Q ss_pred HHHhhchHHHHHHH-hcCCceeEEEeccCCCCCcccc
Q 002128 96 TVYEEGVKNVALSA-LMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 96 eVy~~~v~plV~sv-l~G~N~tIfAYGqTGSGKTyTM 131 (962)
-||.- +......+ -.|.|-||+.-|.+|||||.|.
T Consensus 73 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAI-ADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHH-HHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 35653 33333333 3699999999999999999987
No 124
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=54.58 E-value=15 Score=41.12 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.1
Q ss_pred cCCceeEEEeccCCCCCcccc
Q 002128 111 MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM 131 (962)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999999876
No 125
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=53.27 E-value=7.2 Score=44.61 Aligned_cols=29 Identities=34% Similarity=0.281 Sum_probs=19.5
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
.++..++.+. ..|+-.|.||||||++|.-
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~a 163 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLANA 163 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHHH
Confidence 3344444432 3477889999999999843
No 126
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=52.89 E-value=16 Score=44.51 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=23.8
Q ss_pred eEEEeccCCCCCcccc--------cCC----chHHHHHHHHHHh
Q 002128 116 TIFAYGQTSSGKTYTM--------RGI----TEKAVVDIYNHIM 147 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM--------~Gi----i~ral~dLF~~i~ 147 (962)
-||..|+|.|||||-- .|+ .-....++|+...
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~n 236 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLN 236 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhh
Confidence 4899999999999987 243 3345567887764
No 127
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=52.54 E-value=54 Score=41.34 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=25.4
Q ss_pred HHHhhchHHHHHHHh-cCCceeEEEeccCCCCCcccc
Q 002128 96 TVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 96 eVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM 131 (962)
-||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYAL-ADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 36653 333333333 699999999999999999987
No 128
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.23 E-value=44 Score=42.69 Aligned_cols=39 Identities=28% Similarity=0.287 Sum_probs=22.0
Q ss_pred CCCccchhhhhhhccC-CCCCchhhhH---------HHHHHHHHhhccc
Q 002128 890 LDGKHRRLQFVSKLWT-DPHDPRHVQE---------SAEIVAKLVGFCE 928 (962)
Q Consensus 890 l~sK~RrlQl~~~lWt-~~~d~~hv~e---------Sa~~Vaklv~~~~ 928 (962)
++--|=||-+|-+=-+ -.+|..|+-+ +|.+-+|=..|-|
T Consensus 978 lSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efee 1026 (1243)
T KOG0971|consen 978 LSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEE 1026 (1243)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667655443 3455555432 6777777766654
No 129
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=52.03 E-value=13 Score=44.66 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=29.7
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHH-Hhc--C--CceeEEEeccCCCCCccccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALS-ALM--G--INATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~s-vl~--G--~N~tIfAYGqTGSGKTyTM~ 132 (962)
..+||.|.+.+...+++.+ .+..+... .+. | ..-.|+-||++|+|||+...
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 5678888776554444432 22221100 111 2 23358899999999999983
No 130
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=51.78 E-value=31 Score=43.59 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
+.++||.|+..|+.++...+.++..++.++++.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665555433
No 131
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=51.70 E-value=8.5 Score=42.64 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=25.1
Q ss_pred CCCchhHHHhhchHHHHHHHhc--CCceeEEEeccCCCCCccccc
Q 002128 90 PSCLTETVYEEGVKNVALSALM--GINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 90 ~~asQeeVy~~~v~plV~svl~--G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.-..|+++.+. +..++..... +....++-||+.|+|||+...
T Consensus 5 ~~iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 5 EFIGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 34456666655 3344443322 222346779999999998874
No 132
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.54 E-value=12 Score=44.01 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.0
Q ss_pred ceeEEEeccCCCCCcccccC
Q 002128 114 NATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~G 133 (962)
...|+.+|+||+|||+|+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999999843
No 133
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=51.15 E-value=9.1 Score=39.68 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=18.6
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+++...+.. ...+.-.|+||||||.+|
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 344444443 345677799999999987
No 134
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.08 E-value=1e+02 Score=37.69 Aligned_cols=64 Identities=27% Similarity=0.433 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCh----h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 369 DKQLVKHLQKEVARLEAELRTPDPSR----E----KDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 369 ~~~li~~LqkEi~~Le~eL~~~~~~~----~----ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
..+-+..|+.||++|-.+|....... + .-.+...|+.+.++|..+.|.+..+++.+.+.+++-+
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~ 77 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYR 77 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999988885432110 1 1112334666666777777777777776666666554
No 135
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=50.94 E-value=69 Score=33.04 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC
Q 002128 371 QLVKHLQKEVARLEAELRTPDP 392 (962)
Q Consensus 371 ~li~~LqkEi~~Le~eL~~~~~ 392 (962)
.-.++|++|+..|+.|++....
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~ 61 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISA 61 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-T
T ss_pred HHHHHHHHHHHHHHHHHHcCCc
Confidence 3467899999999999987653
No 136
>PRK11637 AmiB activator; Provisional
Probab=50.49 E-value=98 Score=36.59 Aligned_cols=7 Identities=29% Similarity=0.928 Sum_probs=2.9
Q ss_pred ceEEEEe
Q 002128 815 QIYMEVE 821 (962)
Q Consensus 815 ~iymeve 821 (962)
.+|+||.
T Consensus 408 ~l~fei~ 414 (428)
T PRK11637 408 SLYFEIR 414 (428)
T ss_pred eEEEEEE
Confidence 3444443
No 137
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.19 E-value=1.4e+02 Score=39.63 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=8.5
Q ss_pred eccCCCCCcccc
Q 002128 120 YGQTSSGKTYTM 131 (962)
Q Consensus 120 YGqTGSGKTyTM 131 (962)
.|+.||||+-.+
T Consensus 114 vGPNGSGKSNVI 125 (1293)
T KOG0996|consen 114 VGPNGSGKSNVI 125 (1293)
T ss_pred ECCCCCCchHHH
Confidence 477777777665
No 138
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=49.76 E-value=11 Score=38.85 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=17.1
Q ss_pred HHHhcCCceeEEEeccCCCCCcccc
Q 002128 107 LSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 107 ~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..++.|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 34555877 467789999999873
No 139
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=49.69 E-value=6.8 Score=42.70 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.1
Q ss_pred CceeEEEeccCCCCCcccc
Q 002128 113 INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM 131 (962)
.++.++..|..|||||+||
T Consensus 12 ~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHH
T ss_pred CCCCEEEEeCCCCCchHHH
Confidence 6677788889999999999
No 140
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=49.58 E-value=8.4 Score=50.94 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=23.3
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCcccccCCchH
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTMRGITEK 137 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~r 137 (962)
+..++..+..|...+++. .+||||||+||.+++.+
T Consensus 422 I~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~li~~ 456 (1123)
T PRK11448 422 IQAVEKAIVEGQREILLA-MATGTGKTRTAIALMYR 456 (1123)
T ss_pred HHHHHHHHHhccCCeEEE-eCCCCCHHHHHHHHHHH
Confidence 444555555676655544 79999999998665433
No 141
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=49.46 E-value=1.1e+02 Score=27.72 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRK 427 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~ 427 (962)
|..|+.++++|+.+...+..+...|+..
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3334444444444444444433333333
No 142
>PTZ00424 helicase 45; Provisional
Probab=49.26 E-value=9.3 Score=43.87 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 44557788885 46689999999764
No 143
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=49.24 E-value=10 Score=44.82 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=18.3
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..+++|.| +++.++||||||.+.
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 445668887 677789999999663
No 144
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=49.21 E-value=6.8 Score=43.66 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=15.6
Q ss_pred eEEEeccCCCCCcccccCC
Q 002128 116 TIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~Gi 134 (962)
.|.-.|+||+|||+|+..+
T Consensus 196 vi~~vGptGvGKTTt~~kL 214 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKL 214 (282)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5666799999999998654
No 145
>PHA00729 NTP-binding motif containing protein
Probab=49.16 E-value=12 Score=40.72 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=24.7
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCcccccCCch
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTMRGITE 136 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~ 136 (962)
++.++..+..|-=..|+.+|.+|+||||....+..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 44556665544335799999999999998765443
No 146
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=48.32 E-value=18 Score=41.21 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=45.6
Q ss_pred cceecCCCCchhHHHhhchHHH-HHHHhcCCc---eeEEEeccCCCCCcccc-----------------------cCCch
Q 002128 84 FDKVFGPSCLTETVYEEGVKNV-ALSALMGIN---ATIFAYGQTSSGKTYTM-----------------------RGITE 136 (962)
Q Consensus 84 FD~VF~~~asQeeVy~~~v~pl-V~svl~G~N---~tIfAYGqTGSGKTyTM-----------------------~Gii~ 136 (962)
.+-|-+-+.--+.+-+.++.|+ ...+|.|.- ..|+-||+.|+||+|.. +|-.+
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESE 211 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 211 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHH
Confidence 3444444444444555555554 345566654 57999999999999976 36677
Q ss_pred HHHHHHHHHHhcCCC
Q 002128 137 KAVVDIYNHIMNTPE 151 (962)
Q Consensus 137 ral~dLF~~i~~~~~ 151 (962)
..+..||....++..
T Consensus 212 kLVknLFemARe~kP 226 (439)
T KOG0739|consen 212 KLVKNLFEMARENKP 226 (439)
T ss_pred HHHHHHHHHHHhcCC
Confidence 889999988766544
No 147
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=48.31 E-value=6.1 Score=37.36 Aligned_cols=26 Identities=31% Similarity=0.578 Sum_probs=19.0
Q ss_pred EEEeccCCCCCcccccCCchHHHHHHHHHH
Q 002128 117 IFAYGQTSSGKTYTMRGITEKAVVDIYNHI 146 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~Gii~ral~dLF~~i 146 (962)
|+-||++|.|||+.+ ...+.++.+.+
T Consensus 1 I~i~G~~G~GKS~l~----~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA----KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH----HHHHHHHHHHh
Confidence 578999999999987 33455555555
No 148
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=48.07 E-value=10 Score=43.56 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 103 KNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 103 ~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
..++..++.+. ..|+..|.||||||.+|.
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 34444444432 346778999999999983
No 149
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.85 E-value=11 Score=44.32 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=24.3
Q ss_pred chhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 93 sQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.|+.+... ...+...+-.+.-..++-||++|+|||+...
T Consensus 16 Gq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 34444433 2334333445555567779999999998774
No 150
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=47.61 E-value=7.5 Score=37.63 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.5
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999875
No 151
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.26 E-value=76 Score=28.75 Aligned_cols=52 Identities=27% Similarity=0.309 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 372 LVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 372 li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
.|..|+.|+..|+.+-. ........+..+.+.|+.++...+..++.|-.++.
T Consensus 19 ti~~Lq~e~eeLke~n~------~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 19 TIALLQMENEELKEKNN------ELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35667777777765422 12234555666666666666666666665555543
No 152
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=47.11 E-value=12 Score=40.22 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=13.6
Q ss_pred CceeEEEeccCCCCCcccc
Q 002128 113 INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM 131 (962)
.+-.+++.|+.||||||..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 4557899999999999875
No 153
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=46.77 E-value=13 Score=46.43 Aligned_cols=38 Identities=26% Similarity=0.499 Sum_probs=30.0
Q ss_pred CceeEEEeccCCCCCcccc-----------------------cCCchHHHHHHHHHHhcCC
Q 002128 113 INATIFAYGQTSSGKTYTM-----------------------RGITEKAVVDIYNHIMNTP 150 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM-----------------------~Gii~ral~dLF~~i~~~~ 150 (962)
.-+.|+-||+.|+||||.. .|--+..+++||.+.....
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAK 760 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccC
Confidence 3456999999999999987 2556788999998876543
No 154
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.62 E-value=84 Score=28.45 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 369 DKQLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 369 ~~~li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
.+..|.+|+.|-..|-..-. .....|.+|...+.++..+++.+...++++...+....
T Consensus 10 KDe~Ia~L~eEGekLSk~el------~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKEL------KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777776643211 12234555555555555555555555555544444443
No 155
>PRK06547 hypothetical protein; Provisional
Probab=46.59 E-value=15 Score=38.09 Aligned_cols=29 Identities=28% Similarity=0.211 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 103 KNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 103 ~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..++..+..+.---|.-+|.+|||||+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34455555555555666799999999876
No 156
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=46.53 E-value=47 Score=38.74 Aligned_cols=81 Identities=22% Similarity=0.391 Sum_probs=47.6
Q ss_pred cCCceeEEEeccCCCCCcccccCCchHHHHHHHHH-HhcC----------CCCceEEEeeeEEEecccccccccCCCCCc
Q 002128 111 MGINATIFAYGQTSSGKTYTMRGITEKAVVDIYNH-IMNT----------PERDFTIKISGLEIYNENVRDLLNSESGRN 179 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~Gii~ral~dLF~~-i~~~----------~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~ 179 (962)
.|+.-+|+..|+.|+|||.-+ ..||.. +... ......+..+..+|-.+.+ .-.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi--------NtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~--------~~~ 83 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI--------NTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGF--------HLN 83 (373)
T ss_pred cCCceEEEEecCCCCchhHHH--------HhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCe--------EEE
Confidence 699999999999999999865 233332 1111 1123445555555533311 125
Q ss_pred ceeeeCCCCCeEecCceEEeeCCHHHHHHHHHH
Q 002128 180 LKLLDDPEKGTVVEKLVEETANNDQHLRHLISI 212 (962)
Q Consensus 180 L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~ 212 (962)
+.+.+.|.-|-.+.+ -.+++-+..+|..
T Consensus 84 l~vIDtpGfGD~idN-----s~~we~I~~yI~~ 111 (373)
T COG5019 84 LTVIDTPGFGDFIDN-----SKCWEPIVDYIDD 111 (373)
T ss_pred EEEeccCCccccccc-----cccHHHHHHHHHH
Confidence 667777776766665 2355666666654
No 157
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=46.44 E-value=15 Score=46.62 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=29.3
Q ss_pred chHHHHHHHhcCCceeEEEeccCCCCCcccccCCchH
Q 002128 101 GVKNVALSALMGINATIFAYGQTSSGKTYTMRGITEK 137 (962)
Q Consensus 101 ~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~r 137 (962)
++..+++++-+|.+-.+++. .||+|||+|.+-++.+
T Consensus 173 AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAiaii~r 208 (875)
T COG4096 173 AIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIAIIDR 208 (875)
T ss_pred HHHHHHHHHhcCCceEEEEE-ecCCCcceeHHHHHHH
Confidence 56788899999999977776 7999999998655443
No 158
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=46.32 E-value=7.3 Score=37.89 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.6
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999876
No 159
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=46.29 E-value=20 Score=39.22 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=28.1
Q ss_pred cCCCCchhHHHhhchHHHHHHHhc-C-CceeEEEeccCCCCCccc
Q 002128 88 FGPSCLTETVYEEGVKNVALSALM-G-INATIFAYGQTSSGKTYT 130 (962)
Q Consensus 88 F~~~asQeeVy~~~v~plV~svl~-G-~N~tIfAYGqTGSGKTyT 130 (962)
|++-..|+.+-.. .+.++..+.. | .-..++-||+.|.|||..
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 4566788888876 6777777654 2 234588899999999864
No 160
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=46.15 E-value=8.1 Score=44.55 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=19.2
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.++..++.+ ...|+..|.||||||++|.
T Consensus 153 ~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 344444432 3447778999999999984
No 161
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=45.78 E-value=12 Score=46.74 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=25.7
Q ss_pred HHHhhchHHHHHHH-hcCCceeEEEeccCCCCCcccc
Q 002128 96 TVYEEGVKNVALSA-LMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 96 eVy~~~v~plV~sv-l~G~N~tIfAYGqTGSGKTyTM 131 (962)
-||.- +......+ ..|.|-||+-.|.+|||||.++
T Consensus 67 Hif~~-a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAV-AQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHH-HHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchh-hhcccccccccccccceeeccccccccccch
Confidence 46654 33333333 3689999999999999999996
No 162
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=45.61 E-value=12 Score=43.77 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=19.6
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3445678877 788899999999874
No 163
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.40 E-value=13 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=17.9
Q ss_pred eeEEEeccCCCCCcccc-------cCCchH
Q 002128 115 ATIFAYGQTSSGKTYTM-------RGITEK 137 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM-------~Gii~r 137 (962)
+.+.-+|+||||||..+ +|-.|+
T Consensus 27 gl~~I~G~nGaGKSTildAI~~aL~G~~~~ 56 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLLDAITYALYGKLPR 56 (1042)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCCCC
Confidence 45567899999999887 576665
No 164
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.29 E-value=95 Score=34.03 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQT 434 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~ 434 (962)
++..++..++++.+..+..+.++.+|.+++.+....
T Consensus 64 e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 64 EIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555544444433
No 165
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=45.19 E-value=8.6 Score=36.09 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=14.3
Q ss_pred EEEeccCCCCCcccccCC
Q 002128 117 IFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~Gi 134 (962)
|+-.|.+|||||+...-+
T Consensus 1 I~i~G~~GsGKtTia~~L 18 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKEL 18 (129)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHH
Confidence 577899999999887433
No 166
>PRK13764 ATPase; Provisional
Probab=45.05 E-value=11 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=17.6
Q ss_pred CCceeEEEeccCCCCCcccccC
Q 002128 112 GINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM~G 133 (962)
.....|+..|+||||||+++..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHH
Confidence 3344589999999999999854
No 167
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=44.91 E-value=9 Score=39.67 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.7
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46888999999999964
No 168
>PLN03025 replication factor C subunit; Provisional
Probab=44.77 E-value=13 Score=41.95 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=15.9
Q ss_pred eeEEEeccCCCCCcccccCC
Q 002128 115 ATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~Gi 134 (962)
..++-||+.|+|||++...+
T Consensus 35 ~~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILAL 54 (319)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34667999999999998553
No 169
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=44.59 E-value=11 Score=37.56 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=17.2
Q ss_pred EEEeccCCCCCcccccCCchHHHHHHHHH
Q 002128 117 IFAYGQTSSGKTYTMRGITEKAVVDIYNH 145 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~Gii~ral~dLF~~ 145 (962)
+--.|.||+||||+- ....+.||..
T Consensus 56 lSfHG~tGtGKn~v~----~liA~~ly~~ 80 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS----RLIAEHLYKS 80 (127)
T ss_pred EEeecCCCCcHHHHH----HHHHHHHHhc
Confidence 345699999999974 3345556654
No 170
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=44.51 E-value=17 Score=40.64 Aligned_cols=30 Identities=33% Similarity=0.259 Sum_probs=23.1
Q ss_pred chHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 101 GVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 101 ~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+.|++ ..+.--+..|-.||+|++|||.++
T Consensus 181 fa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 181 FAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 344555 455666778889999999999988
No 171
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=44.16 E-value=1.3e+02 Score=30.46 Aligned_cols=44 Identities=30% Similarity=0.462 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 002128 395 EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTSNPL 438 (962)
Q Consensus 395 ~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~~~l 438 (962)
+....+.-.+..+++|+.+.+.-.+++..|++++.+....+..+
T Consensus 84 e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 84 EQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445777888889999999999999999999998887655443
No 172
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=44.02 E-value=8 Score=44.02 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=13.9
Q ss_pred EEEeccCCCCCccccc
Q 002128 117 IFAYGQTSSGKTYTMR 132 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~ 132 (962)
...||+|||||++-++
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4669999999999984
No 173
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.16 E-value=14 Score=43.31 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.|. ++-++||||||.+.
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 34456789874 56679999999864
No 174
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=42.60 E-value=11 Score=39.38 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=15.3
Q ss_pred CCceeEEEeccCCCCCccccc
Q 002128 112 GINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.....||..||.|||||+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 344578899999999998873
No 175
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.52 E-value=28 Score=40.42 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=20.8
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..|..+++|.+| +....||||||..+
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AF 61 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAF 61 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhh
Confidence 356677899987 45679999999887
No 176
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=42.49 E-value=9 Score=44.95 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=16.8
Q ss_pred ceeEEEeccCCCCCcccccCCc
Q 002128 114 NATIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~Gii 135 (962)
+--++.+|.||||||..|..++
T Consensus 42 ~~h~~i~g~tGsGKt~~i~~l~ 63 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELL 63 (410)
T ss_pred hccEEEEcCCCCCHHHHHHHHH
Confidence 3457889999999998764443
No 177
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.43 E-value=77 Score=29.29 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDE 423 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~ 423 (962)
.|.-|+.+|++|+.+...+..+.+.
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666665555554433
No 178
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.04 E-value=61 Score=37.04 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 002128 375 HLQKEVARLEA 385 (962)
Q Consensus 375 ~LqkEi~~Le~ 385 (962)
.|+.++..|++
T Consensus 188 ~L~~e~~~Lk~ 198 (325)
T PF08317_consen 188 ELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 179
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=41.91 E-value=17 Score=42.81 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=24.4
Q ss_pred hHHHhhchHHHHHHHhcCC----ceeEEEeccCCCCCccccc
Q 002128 95 ETVYEEGVKNVALSALMGI----NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 95 eeVy~~~v~plV~svl~G~----N~tIfAYGqTGSGKTyTM~ 132 (962)
...|......+..++.+-. ..-|.-.|+||.|||+|+-
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 3444444444444444442 5566778999999999983
No 180
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=41.88 E-value=46 Score=42.12 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=28.5
Q ss_pred eeecceecCCCCchhHHHhhchHHHHH-HHhc--C--CceeEEEeccCCCCCccccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVAL-SALM--G--INATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~-svl~--G--~N~tIfAYGqTGSGKTyTM~ 132 (962)
.++||.|-+.+..-+.+.+.+..|+-. .++. | ....|+-||++|+|||+.+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHH
Confidence 467777665443333443332222211 1111 2 22468899999999998863
No 181
>PRK09039 hypothetical protein; Validated
Probab=41.69 E-value=82 Score=36.46 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002128 396 KDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQT 434 (962)
Q Consensus 396 ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~ 434 (962)
..-++..|..+|+.|+.|+..++.+|+..+++..+.+..
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555544444433
No 182
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=41.56 E-value=16 Score=44.59 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=22.9
Q ss_pred hHHHHHHHhcCCc--eeEEEeccCCCCCcccc
Q 002128 102 VKNVALSALMGIN--ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 102 v~plV~svl~G~N--~tIfAYGqTGSGKTyTM 131 (962)
|+..++..+.|.. ..++.+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 5556666665553 46788999999999997
No 183
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=41.38 E-value=17 Score=40.11 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=17.1
Q ss_pred cCCceeEEEeccCCCCCccccc
Q 002128 111 MGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.|....++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4444457889999999998873
No 184
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=41.29 E-value=17 Score=43.18 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=19.3
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..+++|.| |++-++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3445678887 677789999999874
No 185
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.17 E-value=1.5e+02 Score=37.81 Aligned_cols=65 Identities=29% Similarity=0.427 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 002128 372 LVKHLQKEVARLEAELRTPDPSR-EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTSN 436 (962)
Q Consensus 372 li~~LqkEi~~Le~eL~~~~~~~-~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~~ 436 (962)
-.++|+.|+..|...+....... +....+..-+.+|+++..++|...+++++|..++++.|+.+.
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666655555444332211 122234445566777777777766666666666666665443
No 186
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.11 E-value=12 Score=43.82 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=17.6
Q ss_pred ceeEEEeccCCCCCcccccCCc
Q 002128 114 NATIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~Gii 135 (962)
...++-+|+||+|||+|+..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4567789999999999985543
No 187
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=41.02 E-value=11 Score=41.16 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.3
Q ss_pred ceeEEEeccCCCCCcccccC
Q 002128 114 NATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~G 133 (962)
...++-||++|+|||++...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 34578899999999998744
No 188
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.61 E-value=1.9e+02 Score=37.85 Aligned_cols=21 Identities=0% Similarity=0.178 Sum_probs=13.5
Q ss_pred ceeecceecCCCCchhHHHhh
Q 002128 80 SSFSFDKVFGPSCLTETVYEE 100 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~ 100 (962)
..|.-.....++..-+++|..
T Consensus 113 ~KylINGh~a~~~~vq~lF~S 133 (1174)
T KOG0933|consen 113 NKYLINGHLAQNSKVQDLFCS 133 (1174)
T ss_pred eeEEEcCeeCchhHHHHHHHH
Confidence 346666666666666677765
No 189
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=40.21 E-value=20 Score=41.07 Aligned_cols=73 Identities=22% Similarity=0.320 Sum_probs=51.0
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhc---CCce--eEEEeccCCCCCcccc------c---------------
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALM---GINA--TIFAYGQTSSGKTYTM------R--------------- 132 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~---G~N~--tIfAYGqTGSGKTyTM------~--------------- 132 (962)
+..|.||.|-+-..--.++-+.+.-|++...+- |+.. .+.-||+.|+|||+-. +
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 567889988776655556666666777766542 4443 4788999999999865 2
Q ss_pred --CCchHHHHHHHHHHhcCCC
Q 002128 133 --GITEKAVVDIYNHIMNTPE 151 (962)
Q Consensus 133 --Gii~ral~dLF~~i~~~~~ 151 (962)
|-.-|.+++.|++...+..
T Consensus 206 yiGEsaRlIRemf~yA~~~~p 226 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIP 226 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCc
Confidence 3345778889988766543
No 190
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=39.90 E-value=39 Score=37.59 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=29.7
Q ss_pred CCceeEEEeccCCCCCcccccCCchHHHHHHHHHHhcC-CCCceEEEeeeEEE
Q 002128 112 GINATIFAYGQTSSGKTYTMRGITEKAVVDIYNHIMNT-PERDFTIKISGLEI 163 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM~Gii~ral~dLF~~i~~~-~~~~f~V~vS~lEI 163 (962)
.-+.+|.-||+=|||||+.| ..+...+... ...-+.|.++.+..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l--------~~l~~~L~~~~~~~~~~i~fn~w~~ 62 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL--------NMLKEELKEDNKEKYIFIYFNAWEY 62 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH--------HHHHHHHhcccccceeeEEEccccC
Confidence 56788999999999999986 4455555544 23344556655554
No 191
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.89 E-value=88 Score=32.84 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002128 398 LKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQ 433 (962)
Q Consensus 398 ~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~ 433 (962)
......++|+++++.+++.++.+++.|+++....+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567788888888888888888888777766543
No 192
>CHL00176 ftsH cell division protein; Validated
Probab=39.80 E-value=28 Score=43.47 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=15.7
Q ss_pred eeEEEeccCCCCCccccc
Q 002128 115 ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~ 132 (962)
..|+-||++|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999999983
No 193
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=39.77 E-value=14 Score=43.31 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=27.9
Q ss_pred ceeEEEeccCCCCCcccccCCchHHHHHHHHHHhcCCCCceEEEeeeEEEecc
Q 002128 114 NATIFAYGQTSSGKTYTMRGITEKAVVDIYNHIMNTPERDFTIKISGLEIYNE 166 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE 166 (962)
-+.|+-||.+||||||++ ..+|+... .-.|++.++|-|.=
T Consensus 30 PS~~~iyG~sgTGKT~~~--------r~~l~~~n-----~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLV--------RQLLRKLN-----LENVWLNCVECFTY 69 (438)
T ss_pred ceeEEEeccCCCchhHHH--------HHHHhhcC-----CcceeeehHHhccH
Confidence 334689999999999986 45555541 12388888887753
No 194
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=39.47 E-value=20 Score=44.89 Aligned_cols=34 Identities=26% Similarity=0.158 Sum_probs=23.8
Q ss_pred chHHHHHHHhc-----CCceeEEEeccCCCCCcccccCCc
Q 002128 101 GVKNVALSALM-----GINATIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 101 ~v~plV~svl~-----G~N~tIfAYGqTGSGKTyTM~Gii 135 (962)
++..+++.+.. |.+..|+.. .||||||+||..+.
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~la 284 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLFAA 284 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHHHH
Confidence 46667777765 445555554 89999999996543
No 195
>PRK04195 replication factor C large subunit; Provisional
Probab=39.35 E-value=23 Score=42.49 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=22.0
Q ss_pred hHHHHHHHhcCC-ceeEEEeccCCCCCcccc
Q 002128 102 VKNVALSALMGI-NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 102 v~plV~svl~G~-N~tIfAYGqTGSGKTyTM 131 (962)
+...+.....|. ...++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444555555554 556888999999999987
No 196
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=38.97 E-value=1.2e+02 Score=27.34 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
+...+.++..|..++|.+..++........+..
T Consensus 21 ~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk 53 (69)
T PF14197_consen 21 NSVHEIENKRLRRERDSAERQLGDAYEENNKLK 53 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555444444444333333
No 197
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=38.37 E-value=19 Score=40.70 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=15.4
Q ss_pred eeEEEeccCCCCCccccc
Q 002128 115 ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~ 132 (962)
..++-||++|+|||+.+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 357789999999999875
No 198
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.21 E-value=1.1e+02 Score=34.44 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
+++..+++|.+++.+...++.+|++++..+.+.
T Consensus 67 k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 67 KIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 199
>PRK10536 hypothetical protein; Provisional
Probab=37.97 E-value=19 Score=40.15 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=28.3
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||..
T Consensus 50 ~~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 50 DSRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hhcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHH
Confidence 34666666666665554433 2223 348899999999999986
No 200
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.86 E-value=21 Score=42.55 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=18.7
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.|..++.|.++ ++..+||||||.+.
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 45567789874 55579999999764
No 201
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=37.69 E-value=18 Score=45.13 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=16.3
Q ss_pred eEEEeccCCCCCcccccCCc
Q 002128 116 TIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~Gii 135 (962)
.++-.|+.|||||||+..++
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii 194 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELI 194 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45689999999999986543
No 202
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.67 E-value=1.7e+02 Score=28.55 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002128 398 LKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQ 433 (962)
Q Consensus 398 ~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~ 433 (962)
.++..|+..+.+|..+...++-+.+.||..+.+..+
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777888888888888888888888877654
No 203
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=37.18 E-value=27 Score=39.89 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.1
Q ss_pred eeEEEeccCCCCCccccc
Q 002128 115 ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~ 132 (962)
..|.-.|++|+|||+|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 466777999999999983
No 204
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=37.03 E-value=19 Score=43.07 Aligned_cols=28 Identities=21% Similarity=0.080 Sum_probs=19.4
Q ss_pred CCCCCccceeeccCCCCcchHHHHHHHHHHHH
Q 002128 322 LGGNARTAIICTLSPALSHFEQSRNTLFFATR 353 (962)
Q Consensus 322 LGGNskT~mI~tISPs~~~~eETlsTLrFAsR 353 (962)
+.-..+..+|||++.... ++..|.+|-+
T Consensus 320 f~iP~Nl~IIgTMNt~Dr----s~~~lD~Alr 347 (459)
T PRK11331 320 FYVPENVYIIGLMNTADR----SLAVVDYALR 347 (459)
T ss_pred ccCCCCeEEEEecCcccc----chhhccHHHH
Confidence 455688999999998764 3445666543
No 205
>PF05729 NACHT: NACHT domain
Probab=36.91 E-value=16 Score=35.72 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=14.7
Q ss_pred eEEEeccCCCCCccccc
Q 002128 116 TIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~ 132 (962)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 46789999999999884
No 206
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=36.77 E-value=26 Score=43.99 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=26.0
Q ss_pred hHHHhhchHHHHHHH-hcCCceeEEEeccCCCCCcccc
Q 002128 95 ETVYEEGVKNVALSA-LMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 95 eeVy~~~v~plV~sv-l~G~N~tIfAYGqTGSGKTyTM 131 (962)
--||.- +......+ -.|.|-||+.-|.+|||||.|.
T Consensus 73 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAI-ADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 346654 33333333 3689999999999999999987
No 207
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=36.61 E-value=14 Score=35.72 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=14.6
Q ss_pred EEEeccCCCCCcccccCC
Q 002128 117 IFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~Gi 134 (962)
++-||.+|+|||+.+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 467999999999987543
No 208
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=36.50 E-value=1.1e+02 Score=31.19 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=18.3
Q ss_pred hHHhhHHHHHHhHHHhHhHHHhhhhc
Q 002128 490 IRKLEHLQEQLGEEANRALEVLQKEV 515 (962)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~ev 515 (962)
|...+....++.++...++++|+++.
T Consensus 110 l~~~E~ek~q~~e~~~~~ve~L~~ql 135 (140)
T PF10473_consen 110 LQEKEQEKVQLKEESKSAVEMLQKQL 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677778888888888873
No 209
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=36.17 E-value=54 Score=41.17 Aligned_cols=55 Identities=24% Similarity=0.368 Sum_probs=36.8
Q ss_pred CCCCCccccCChhhhhhhccCCCCC-----ccc----eeeccCCCCcchHHHHHHHHHHHHhhccccccc
Q 002128 302 KRSGHIPYRDSKLTRILQHSLGGNA-----RTA----IICTLSPALSHFEQSRNTLFFATRAKEVTNNAQ 362 (962)
Q Consensus 302 ~k~~hIPYRDSKLTrLLqdsLGGNs-----kT~----mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~ 362 (962)
.+-.+-||-...|-.++...|.|-. -+= =||.||- .+...|.++.||.+|.....
T Consensus 569 tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG------DaRraldic~RA~Eia~~~~ 632 (767)
T KOG1514|consen 569 TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG------DARRALDICRRAAEIAEERN 632 (767)
T ss_pred eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhhhhc
Confidence 3556789998899999988888751 000 1233432 46778899999988865443
No 210
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.88 E-value=21 Score=42.07 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=27.6
Q ss_pred chhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCccc
Q 002128 93 LTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYT 130 (962)
Q Consensus 93 sQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyT 130 (962)
.|+.+... .+++-.-+-.|.-.+.+-||+.|+|||..
T Consensus 28 GQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 46666654 55555555678888889999999999964
No 211
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.81 E-value=17 Score=41.83 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=14.8
Q ss_pred ceeEEEeccCCCCCcccc
Q 002128 114 NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM 131 (962)
-+-|+..|+||||||+.-
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 356889999999999754
No 212
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.77 E-value=1.2e+02 Score=33.05 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 374 KHLQKEVARLEAELRTPDP----SREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 374 ~~LqkEi~~Le~eL~~~~~----~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
++++++...++..+.+... ......+...++.++++....++.++.+.+.|+++..+.+
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4455566666666655443 1122334555666666666666666666666666555444
No 213
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.60 E-value=65 Score=35.65 Aligned_cols=32 Identities=34% Similarity=0.505 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHH
Q 002128 372 LVKHLQKEVARLEAELRTPDPS-REKDLKIQQM 403 (962)
Q Consensus 372 li~~LqkEi~~Le~eL~~~~~~-~~ke~~iq~l 403 (962)
.|..|++||++|+..|...+.. .+++.+|..|
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnL 258 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNL 258 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhcc
Confidence 4678999999999988755432 2444444433
No 214
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=35.59 E-value=11 Score=43.92 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=13.7
Q ss_pred eEEEeccCCCCCcccccCC
Q 002128 116 TIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~Gi 134 (962)
-++..|.||||||.+|..+
T Consensus 17 ~~li~G~~GsGKT~~i~~l 35 (386)
T PF10412_consen 17 HILIIGATGSGKTQAIRHL 35 (386)
T ss_dssp -EEEEE-TTSSHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 4678899999999876443
No 215
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=35.55 E-value=23 Score=40.11 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=20.4
Q ss_pred HhcCCceeEEEeccCCCCCcccccC
Q 002128 109 ALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
.-..-+.-++-||+.|||||.+|.-
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHHH
Confidence 3456777899999999999999843
No 216
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=35.53 E-value=36 Score=40.65 Aligned_cols=20 Identities=40% Similarity=0.381 Sum_probs=16.7
Q ss_pred ceeEEEeccCCCCCcccccC
Q 002128 114 NATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~G 133 (962)
...|+-+|.+|+|||+|...
T Consensus 95 p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45788899999999999843
No 217
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=35.34 E-value=23 Score=44.84 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=18.2
Q ss_pred cCCceeEEEeccCCCCCcccccC
Q 002128 111 MGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
.|.-..++-||++|+|||++...
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 45555788899999999998743
No 218
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=35.29 E-value=14 Score=40.14 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=17.4
Q ss_pred ceeEEEeccCCCCCcccccCC
Q 002128 114 NATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~Gi 134 (962)
...++-||..|+|||++..++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 456899999999999987554
No 219
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.20 E-value=1.5e+02 Score=33.33 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 395 EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 395 ~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
+.+.++.+.+.+|++|+.+++.+...|.+....+.
T Consensus 70 ~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 70 ELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666665555444333
No 220
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.06 E-value=28 Score=39.03 Aligned_cols=37 Identities=27% Similarity=0.562 Sum_probs=27.3
Q ss_pred CCce--eEEEeccCCCCCccccc-----------------------CCchHHHHHHHHHHhc
Q 002128 112 GINA--TIFAYGQTSSGKTYTMR-----------------------GITEKAVVDIYNHIMN 148 (962)
Q Consensus 112 G~N~--tIfAYGqTGSGKTyTM~-----------------------Gii~ral~dLF~~i~~ 148 (962)
|+.- .|+.||+.|+|||.... |--.|.+.+||+....
T Consensus 207 gidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mart 268 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMART 268 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc
Confidence 5554 58999999999998762 3335678889977643
No 221
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=34.93 E-value=39 Score=36.82 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=23.8
Q ss_pred EEeccCCCCCccccc-----------------CCchHHHHHHHHHHhcC
Q 002128 118 FAYGQTSSGKTYTMR-----------------GITEKAVVDIYNHIMNT 149 (962)
Q Consensus 118 fAYGqTGSGKTyTM~-----------------Gii~ral~dLF~~i~~~ 149 (962)
..+|++|+|||.|+. ++....+..||.-+...
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~ 84 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQS 84 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHH
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhc
Confidence 469999999999992 35567788888776543
No 222
>PRK14974 cell division protein FtsY; Provisional
Probab=34.80 E-value=38 Score=39.06 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=16.9
Q ss_pred ceeEEEeccCCCCCcccccC
Q 002128 114 NATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~G 133 (962)
...|.-.|.+|+|||+|+.-
T Consensus 140 ~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 46788899999999999843
No 223
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=34.79 E-value=24 Score=43.10 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=28.6
Q ss_pred eecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 82 FSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 82 F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..|+.+++.+..- +.+...++.+....|+-||++|+|||+..
T Consensus 62 ~~f~~iiGqs~~i--------~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEEGI--------KALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHHHH--------HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 5678887765332 23333445666677888999999999864
No 224
>CHL00195 ycf46 Ycf46; Provisional
Probab=34.71 E-value=33 Score=41.51 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=15.3
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999887
No 225
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=34.45 E-value=30 Score=43.01 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=29.5
Q ss_pred eeEEEeccCCCCCcccc-----------------------cCCchHHHHHHHHHHhcCCC
Q 002128 115 ATIFAYGQTSSGKTYTM-----------------------RGITEKAVVDIYNHIMNTPE 151 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM-----------------------~Gii~ral~dLF~~i~~~~~ 151 (962)
-.|+.||+.|+|||.+. .|--++++.++|+...+...
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP 528 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAP 528 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCC
Confidence 35999999999999886 26667889999988765543
No 226
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=34.42 E-value=21 Score=39.77 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+++..+.. +--|+-.|++|+|||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 34444433 556789999999999876
No 227
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=34.39 E-value=22 Score=44.25 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=19.3
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455677876 678889999999874
No 228
>PRK10865 protein disaggregation chaperone; Provisional
Probab=34.25 E-value=23 Score=45.74 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.9
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57888899999999976
No 229
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.23 E-value=16 Score=43.83 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=16.5
Q ss_pred HhcCCceeEEEeccCCCCCcccc
Q 002128 109 ALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+.+|.+ ++|++|||||||+..
T Consensus 108 i~~Grd--l~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 108 ISGGRD--LMACAQTGSGKTAAF 128 (482)
T ss_pred eecCCc--eEEEccCCCcchHHH
Confidence 345555 489999999999987
No 230
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=34.08 E-value=18 Score=41.94 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=31.1
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
..|.|+.|-+.+ ++ ..-++..+.+-.-+.|+-+|.+|||||+.+.+
T Consensus 12 ~~~pf~~ivGq~----~~----k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 12 PVFPFTAIVGQE----EM----KLALILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCCHHHHhChH----HH----HHHHHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 478888887643 32 33344455443335688999999999998744
No 231
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=34.05 E-value=38 Score=39.52 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=36.8
Q ss_pred ceeec-c-eecCCCCchhHHHhhchHHHHHHHhcC---CceeEEEeccCCCCCcccccCCchHHHHHHHHHHhcC-CCCc
Q 002128 80 SSFSF-D-KVFGPSCLTETVYEEGVKNVALSALMG---INATIFAYGQTSSGKTYTMRGITEKAVVDIYNHIMNT-PERD 153 (962)
Q Consensus 80 ~~F~F-D-~VF~~~asQeeVy~~~v~plV~svl~G---~N~tIfAYGqTGSGKTyTM~Gii~ral~dLF~~i~~~-~~~~ 153 (962)
+.|.| | .||+- ++.-+..+.- +.....| .+-.+.-.|++|||||... .++...++..... .+.-
T Consensus 44 ~~y~~F~~~~~G~----~~~i~~lv~~-l~~~a~g~~~~r~il~L~GPPGsGKStla-----~~La~~l~~ys~t~eG~~ 113 (361)
T smart00763 44 KRYRFFDHDFFGM----EEAIERFVNY-FKSAAQGLEERKQILYLLGPVGGGKSSLV-----ECLKRGLEEYSKTPEGRR 113 (361)
T ss_pred eeccccchhccCc----HHHHHHHHHH-HHHHHhcCCCCCcEEEEECCCCCCHHHHH-----HHHHHHHhhhcccccCce
Confidence 34543 4 67764 4444443432 3333343 4466788999999999864 3444444333222 2344
Q ss_pred eEEEe
Q 002128 154 FTIKI 158 (962)
Q Consensus 154 f~V~v 158 (962)
|.++.
T Consensus 114 Y~~~~ 118 (361)
T smart00763 114 YTFKW 118 (361)
T ss_pred EEEEe
Confidence 55543
No 232
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=34.05 E-value=32 Score=43.28 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.9
Q ss_pred cCCceeEEEeccCCCCCcccc
Q 002128 111 MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM 131 (962)
.|.|.||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 689999999999999999987
No 233
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=34.00 E-value=23 Score=37.02 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=18.9
Q ss_pred HHHhcCC---ceeEEEeccCCCCCcccc
Q 002128 107 LSALMGI---NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 107 ~svl~G~---N~tIfAYGqTGSGKTyTM 131 (962)
+.++.|- ...+.-||.+|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445443 567899999999999876
No 234
>PHA02244 ATPase-like protein
Probab=33.86 E-value=35 Score=40.08 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=17.7
Q ss_pred HHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
+...+-.|.+ |+-+|+||+|||+...
T Consensus 112 i~r~l~~~~P--VLL~GppGtGKTtLA~ 137 (383)
T PHA02244 112 IAKIVNANIP--VFLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHHHhcCCC--EEEECCCCCCHHHHHH
Confidence 3333345665 4558999999998763
No 235
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=33.82 E-value=35 Score=43.14 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=14.5
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..|+-||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34788999999999876
No 236
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=33.75 E-value=62 Score=38.14 Aligned_cols=132 Identities=21% Similarity=0.340 Sum_probs=0.0
Q ss_pred EEEecCC-Ccc-------------ccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCC
Q 002128 258 NFVDLAG-SER-------------ASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLG 323 (962)
Q Consensus 258 ~fVDLAG-SER-------------~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLG 323 (962)
.++||.| +|. +.++...|..++++.. .-|..+-.++..-+ ...++.+|+---=+-|.+.||
T Consensus 154 ~v~dL~~~~~e~ll~~~~~~~R~~IrkA~k~GV~vr~~~~--e~l~~F~~l~~~T~---~R~~f~~r~~~Yf~~l~~~f~ 228 (406)
T PF02388_consen 154 YVKDLTGFSEEELLKSFSKKTRYNIRKAEKKGVEVREGSR--EELDDFYDLYKETA---ERKGFSIRSLEYFENLYDAFG 228 (406)
T ss_dssp EEEEGCC-TCHHCHHCS-HHHHHHHHHHHCTTEEEEEE-C--HHHHHHHHHHHHHH---HHTT-----HHHHHHHHHHCC
T ss_pred EEEECCCCCHHHHHHHhcHHHHHHHHHhhcCceEEEEcCH--HHHHHHHHHHHHHH---hhCCCcccCHHHHHHHHHhcC
Q ss_pred CCCccceeeccCCCCcchHHHHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 002128 324 GNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSREKDLKIQQM 403 (962)
Q Consensus 324 GNskT~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~l 403 (962)
.++. ++||.+.. ++.+..+++++..|+.++.......++.. +.
T Consensus 229 d~a~-~~~A~l~~---------------------------------~~~~~~l~~~~~~~~~~i~~l~~~l~~~~---k~ 271 (406)
T PF02388_consen 229 DKAK-FFLAELNG---------------------------------KEYLESLQEKLEKLEKEIEKLEEKLEKNP---KK 271 (406)
T ss_dssp CCEE-EEEEEECC---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-T---HH
T ss_pred CCeE-EEEEEEcH---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCc---ch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 404 EMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 404 e~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
+.++++++.+++..+.+++++++-+.+.
T Consensus 272 ~~k~~~~~~q~~~~~k~~~~~~~~~~~~ 299 (406)
T PF02388_consen 272 KNKLKELEEQLASLEKRIEEAEELIAEY 299 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc
No 237
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=33.69 E-value=43 Score=38.17 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.9
Q ss_pred eEEEeccCCCCCcccc-----------------------cCCchHHHHHHHHHHhcCCC
Q 002128 116 TIFAYGQTSSGKTYTM-----------------------RGITEKAVVDIYNHIMNTPE 151 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM-----------------------~Gii~ral~dLF~~i~~~~~ 151 (962)
.|+-||..|+|||... .|--|+.+++||+....+..
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ap 279 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP 279 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCC
Confidence 4899999999999654 36678999999988766543
No 238
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=33.53 E-value=2.3e+02 Score=34.22 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=26.6
Q ss_pred hHHhhHHHHHHhHH---HhHhHHHhhhhceeeecCccchHHHHHHH
Q 002128 490 IRKLEHLQEQLGEE---ANRALEVLQKEVACHRLGNQDAAETIARL 532 (962)
Q Consensus 490 ~~~~~~~~~~~~~~---~~~~~~~~~~ev~c~~~~~~~~~~~~~~~ 532 (962)
..++....++|..+ ++...+.|-|+|-.-++..|...+.+.+.
T Consensus 370 fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~ 415 (622)
T COG5185 370 FELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKT 415 (622)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444455544 45568888899877777777766555444
No 239
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.42 E-value=78 Score=27.87 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 405 MEIEELKRQRDVAQSEVDELRRKLQE 430 (962)
Q Consensus 405 ~eieeLk~~~d~~q~el~~l~~~l~~ 430 (962)
.++.+++++.+.++.+.++|++++..
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 240
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=33.19 E-value=36 Score=42.83 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=26.1
Q ss_pred HHHhhchHHHHHHHh-cCCceeEEEeccCCCCCcccc
Q 002128 96 TVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 96 eVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM 131 (962)
-||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 46654 333344443 599999999999999999987
No 241
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=33.11 E-value=25 Score=43.71 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=30.1
Q ss_pred eecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 82 FSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 82 F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.+||.+++.+ .... .++..+..++...++-||++|+|||+...
T Consensus 151 ~~~~~iiGqs----~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr 193 (615)
T TIGR02903 151 RAFSEIVGQE----RAIK----ALLAKVASPFPQHIILYGPPGVGKTTAAR 193 (615)
T ss_pred CcHHhceeCc----HHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 5677777543 3332 24455566788889999999999998873
No 242
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.87 E-value=1.5e+02 Score=31.29 Aligned_cols=56 Identities=20% Similarity=0.362 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 371 QLVKHLQKEVARLEAELRTPDP-SREKDLKIQQMEMEIEELKRQRDVAQSEVDELRR 426 (962)
Q Consensus 371 ~li~~LqkEi~~Le~eL~~~~~-~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~ 426 (962)
..+..|+.++..|+.++..... ..++...++.+..|+..|+-+...++.++..|+.
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444321110 0133334444444444444444444444443333
No 243
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=32.80 E-value=24 Score=44.73 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=16.1
Q ss_pred CceeEEEeccCCCCCcccc
Q 002128 113 INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM 131 (962)
-|-.|+.+|+||||||+-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3556788999999999988
No 244
>PRK04406 hypothetical protein; Provisional
Probab=32.71 E-value=2.7e+02 Score=25.44 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 375 HLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 375 ~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
.+...|..|+..+. -.+.-|..|.+.+-+..++++.++.++..|..++.
T Consensus 8 ~le~Ri~~LE~~lA------fQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 8 QLEERINDLECQLA------FQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554432 12233444444444444444444444444444443
No 245
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.71 E-value=2.2e+02 Score=30.85 Aligned_cols=36 Identities=36% Similarity=0.387 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 397 DLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 397 e~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
+..+..++.+..+|++++..++.+++.++.++...+
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777777777777777777777766665554
No 246
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=32.64 E-value=1.8e+02 Score=31.11 Aligned_cols=56 Identities=25% Similarity=0.447 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 371 QLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 371 ~li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
.+|+.|+++|+.++.... ..+..+..+..+...|..-+..++.++.+|++.+..-.
T Consensus 27 ~lIksLKeei~emkk~e~------~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEE------RNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999988887432 23445666667777777777777777777777776543
No 247
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=32.34 E-value=32 Score=38.61 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=22.9
Q ss_pred CCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 90 PSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 90 ~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+-..|.++-+ .+.+.+-.|.++ +.=.+||+|||.+.
T Consensus 9 ~r~~Q~~~m~----~v~~~~~~~~~~--~~eapTGtGKTl~~ 44 (289)
T smart00489 9 PYPIQYEFME----ELKRVLDRGKIG--ILESPTGTGKTLSL 44 (289)
T ss_pred CCHHHHHHHH----HHHHHHHcCCcE--EEECCCCcchhHHH
Confidence 3445554443 345555677654 55669999999876
No 248
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=32.34 E-value=32 Score=38.61 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=22.9
Q ss_pred CCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 90 PSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 90 ~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+-..|.++-+ .+.+.+-.|.++ +.=.+||+|||.+.
T Consensus 9 ~r~~Q~~~m~----~v~~~~~~~~~~--~~eapTGtGKTl~~ 44 (289)
T smart00488 9 PYPIQYEFME----ELKRVLDRGKIG--ILESPTGTGKTLSL 44 (289)
T ss_pred CCHHHHHHHH----HHHHHHHcCCcE--EEECCCCcchhHHH
Confidence 3445554443 345555677654 55669999999876
No 249
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=32.25 E-value=36 Score=42.95 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=25.6
Q ss_pred HHHhhchHHHHHHHh-cCCceeEEEeccCCCCCccccc
Q 002128 96 TVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 96 eVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
-||.- +......++ .|.|-||+.-|.+|||||.|..
T Consensus 76 Hiy~i-A~~Ay~~m~~~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 76 HIFAI-ADVAYYNMLRKKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 45653 333333333 5899999999999999999973
No 250
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=32.09 E-value=31 Score=36.86 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=22.3
Q ss_pred hHHHHHHHhcCC---ceeEEEeccCCCCCcccc
Q 002128 102 VKNVALSALMGI---NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 102 v~plV~svl~G~---N~tIfAYGqTGSGKTyTM 131 (962)
+-+-++.++.|- .++++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 334566777643 677888899999999876
No 251
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=32.07 E-value=35 Score=37.54 Aligned_cols=27 Identities=19% Similarity=0.123 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 103 KNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 103 ~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..++..+..|.+. +-+|++|+|||...
T Consensus 12 ~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 3444455556544 56899999999876
No 252
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=32.06 E-value=34 Score=41.41 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=19.2
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..+..++.|.|. ++..+||||||.+.
T Consensus 150 ~aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 150 QAIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHhcCCCE--EEEecCCCCccHHH
Confidence 345567788874 66669999999764
No 253
>smart00338 BRLZ basic region leucin zipper.
Probab=31.94 E-value=1.5e+02 Score=25.70 Aligned_cols=38 Identities=26% Similarity=0.546 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002128 396 KDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQ 433 (962)
Q Consensus 396 ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~ 433 (962)
+...+..|+.++..|..+...+..++..|+.++....+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888888887777777665543
No 254
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=31.89 E-value=34 Score=39.73 Aligned_cols=27 Identities=37% Similarity=0.409 Sum_probs=19.9
Q ss_pred HHHHHHhcCCc---eeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGIN---ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N---~tIfAYGqTGSGKTyTM 131 (962)
|++...+.|.- -|||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 55666676654 45655 99999999988
No 255
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=31.82 E-value=34 Score=43.02 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=16.8
Q ss_pred cCCceeEEEeccCCCCCcccc
Q 002128 111 MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM 131 (962)
.++..-++..|+||||||.+.
T Consensus 279 ~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 279 SPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred ccCCceEEEECCCCCcHHHHH
Confidence 444556899999999999875
No 256
>PRK05580 primosome assembly protein PriA; Validated
Probab=31.73 E-value=23 Score=44.52 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=14.6
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..++.+|+||||||.+.
T Consensus 163 ~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CcEEEECCCCChHHHHH
Confidence 45889999999999776
No 257
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.61 E-value=98 Score=33.12 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 401 QQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 401 q~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
+.+..+|..|+.+...++.+.+.+..+..+.
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 3344444444444444444444444444444
No 258
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=31.58 E-value=20 Score=36.27 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.5
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
+..+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45568899999999987
No 259
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=31.55 E-value=39 Score=42.49 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=25.4
Q ss_pred HHHhhchHHHHHHHh-cCCceeEEEeccCCCCCcccc
Q 002128 96 TVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 96 eVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM 131 (962)
-||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 68 HIFAI-SDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 45653 333333333 589999999999999999997
No 260
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=31.50 E-value=19 Score=35.38 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.8
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|+-.|..|||||+..
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998865
No 261
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.49 E-value=20 Score=42.52 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.6
Q ss_pred eEEEeccCCCCCcccccCC
Q 002128 116 TIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~Gi 134 (962)
.|+-.|+||+|||+|+..+
T Consensus 223 ~i~~vGptGvGKTTt~~kL 241 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKL 241 (424)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5667799999999998554
No 262
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=31.49 E-value=38 Score=42.67 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=25.9
Q ss_pred HHHhhchHHHHHHHh-cCCceeEEEeccCCCCCcccc
Q 002128 96 TVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 96 eVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM 131 (962)
-||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 46654 333333333 699999999999999999997
No 263
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.48 E-value=1.6e+02 Score=25.53 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 396 KDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 396 ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
+...++.|+.++..|..+.+.+..++..|...+..+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777777666554
No 264
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=31.38 E-value=28 Score=42.83 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=19.1
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.|..+++|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3455788988 456779999999765
No 265
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.35 E-value=34 Score=44.37 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=17.2
Q ss_pred eeEEEeccCCCCCcccc-------cCCchH
Q 002128 115 ATIFAYGQTSSGKTYTM-------RGITEK 137 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM-------~Gii~r 137 (962)
+..+-+|+||||||.-+ +|-.++
T Consensus 26 gi~lI~G~nGsGKSSIldAI~~ALyG~~~~ 55 (908)
T COG0419 26 GIFLIVGPNGAGKSSILDAITFALYGKTPR 55 (908)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHcCCCCC
Confidence 34456799999999877 677663
No 266
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.33 E-value=91 Score=30.06 Aligned_cols=30 Identities=7% Similarity=0.172 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 403 MEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 403 le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
++.++++++++++.++.+.+.|+.++...+
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444443
No 267
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=31.25 E-value=28 Score=39.28 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=20.5
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+.+++..++.+. ..|+-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 345565666544 45666799999999987
No 268
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=31.18 E-value=38 Score=42.76 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=26.2
Q ss_pred hHHHhhchHHHHHHHh-cCCceeEEEeccCCCCCcccc
Q 002128 95 ETVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 95 eeVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM 131 (962)
--||.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 72 PHiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 346653 333333333 599999999999999999986
No 269
>PF13173 AAA_14: AAA domain
Probab=30.72 E-value=22 Score=34.50 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.4
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.++-+|+.|+|||+.+
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999987
No 270
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.68 E-value=1.8e+02 Score=33.79 Aligned_cols=62 Identities=26% Similarity=0.351 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 371 QLVKHLQKEVARLEAELRTPDPSR-EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 371 ~li~~LqkEi~~Le~eL~~~~~~~-~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
.+....++|+.++.+++....... +...-.++|+.+++.|+++...++..++=|..+..+.+
T Consensus 218 klR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal 280 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREAL 280 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345566677777766655444322 22233677888888888888888888888888777743
No 271
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=30.51 E-value=24 Score=39.30 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.0
Q ss_pred cCCceeEEEeccCCCCCcccc
Q 002128 111 MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM 131 (962)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999999875
No 272
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=30.42 E-value=26 Score=42.46 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=32.6
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.|.||.+++.+..-+.+.+. +.. +...+..|+-+|.+||||++..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHH-HhCcCCCEEEECCCCccHHHHH
Confidence 47889998877655555544 222 2356888999999999998764
No 273
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=30.40 E-value=20 Score=31.41 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.8
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999877
No 274
>PRK04328 hypothetical protein; Provisional
Probab=30.36 E-value=34 Score=37.35 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=21.5
Q ss_pred HHHHHHhcC---CceeEEEeccCCCCCccc
Q 002128 104 NVALSALMG---INATIFAYGQTSSGKTYT 130 (962)
Q Consensus 104 plV~svl~G---~N~tIfAYGqTGSGKTyT 130 (962)
+-++.++.| ..++++-+|.+|+|||.-
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 456777776 578899999999999764
No 275
>PRK00131 aroK shikimate kinase; Reviewed
Probab=30.12 E-value=24 Score=35.07 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=14.8
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
-.|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999875
No 276
>PHA02653 RNA helicase NPH-II; Provisional
Probab=30.01 E-value=37 Score=42.71 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=18.7
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.++..++.|.+ |+..|+||||||..+
T Consensus 171 qil~~i~~gkd--vIv~A~TGSGKTtqv 196 (675)
T PHA02653 171 KIFEAWISRKP--VVLTGGTGVGKTSQV 196 (675)
T ss_pred HHHHHHHhCCC--EEEECCCCCCchhHH
Confidence 34455566654 588999999999654
No 277
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=29.70 E-value=24 Score=35.93 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.2
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|+.+|..|||||+..
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999864
No 278
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=29.65 E-value=20 Score=41.21 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=25.1
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
..-++..+++..-+-|+-.|.+|+|||..+.+
T Consensus 13 ~~al~~~~~~~~~g~vli~G~~G~gKttl~r~ 44 (337)
T TIGR02030 13 KLALLLNVIDPKIGGVMVMGDRGTGKSTAVRA 44 (337)
T ss_pred HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHH
Confidence 44566777776667788999999999998843
No 279
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=29.64 E-value=34 Score=41.72 Aligned_cols=43 Identities=26% Similarity=0.517 Sum_probs=31.9
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGK 127 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGK 127 (962)
...|+||.+.+.+..-.++-+ ++ .-..+.+++|+-+|.||+||
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~-----~a-kr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLE-----LA-KRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred ccccchhhhccCCHHHHHHHH-----HH-HhhcCCCCcEEEecCCCccH
Confidence 457999999987654433332 22 23578999999999999999
No 280
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=29.63 E-value=2.3e+02 Score=25.24 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
+...+..|++|....-..+.+++.|++.+....
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555554444
No 281
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=29.48 E-value=29 Score=41.32 Aligned_cols=26 Identities=35% Similarity=0.290 Sum_probs=19.8
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..+..+++|.|..+ .++||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 45667789988654 559999999764
No 282
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=29.39 E-value=33 Score=36.31 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=22.3
Q ss_pred HHHHHHHhcC---CceeEEEeccCCCCCcccc
Q 002128 103 KNVALSALMG---INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 103 ~plV~svl~G---~N~tIfAYGqTGSGKTyTM 131 (962)
-+-++.++.| ....+.-+|++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3456777775 4567889999999999876
No 283
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=29.35 E-value=52 Score=39.43 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=28.0
Q ss_pred CCceeEEEeccCCCCCcccc-----------------------cCCchHHHHHHHHHHhc
Q 002128 112 GINATIFAYGQTSSGKTYTM-----------------------RGITEKAVVDIYNHIMN 148 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM-----------------------~Gii~ral~dLF~~i~~ 148 (962)
+....|+-||+.|+|||+.- .|-....+..+|.....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHc
Confidence 44557999999999999987 24556677888877653
No 284
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=29.32 E-value=34 Score=39.45 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=20.8
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..+.+|-+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34567787777888899999999874
No 285
>PRK02119 hypothetical protein; Provisional
Probab=29.32 E-value=3.3e+02 Score=24.68 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
.|..|.+.+-+..++++.++.++..|..++.
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 286
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.20 E-value=2.7e+02 Score=27.31 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 398 LKIQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 398 ~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
.++..|+..+.++-.+...++.+.+.||+.+.+.
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777888888888888888888888875
No 287
>PRK00295 hypothetical protein; Provisional
Probab=29.11 E-value=3.1e+02 Score=24.47 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQE 430 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~ 430 (962)
.|..|.+.+-+..++++.++.++..|..++.+
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 288
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=28.95 E-value=44 Score=42.20 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=25.4
Q ss_pred HHHhhchHHHHHHHh-cCCceeEEEeccCCCCCcccc
Q 002128 96 TVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 96 eVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM 131 (962)
-||.- +.....+++ .|.|-||+.-|.+|||||.+.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFAI-AEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 35643 333333333 699999999999999999987
No 289
>PRK07261 topology modulation protein; Provisional
Probab=28.93 E-value=25 Score=36.17 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=13.0
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999865
No 290
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=28.88 E-value=40 Score=35.67 Aligned_cols=31 Identities=26% Similarity=0.144 Sum_probs=23.0
Q ss_pred hHHHHHHHhcCC---ceeEEEeccCCCCCccccc
Q 002128 102 VKNVALSALMGI---NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 102 v~plV~svl~G~---N~tIfAYGqTGSGKTyTM~ 132 (962)
+-+-++.++.|- ...+.-||.+|||||..+.
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 345567777543 4567899999999998763
No 291
>PRK04325 hypothetical protein; Provisional
Probab=28.88 E-value=3.1e+02 Score=24.89 Aligned_cols=32 Identities=13% Similarity=0.305 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQE 430 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~ 430 (962)
-|..|.+.+-+..++++.++.++..|..++.+
T Consensus 24 tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 24 LIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 292
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.80 E-value=1.3e+02 Score=34.56 Aligned_cols=6 Identities=67% Similarity=0.911 Sum_probs=2.6
Q ss_pred hhHHhh
Q 002128 489 EIRKLE 494 (962)
Q Consensus 489 ~~~~~~ 494 (962)
||.+|.
T Consensus 272 Ei~~Lk 277 (312)
T smart00787 272 EIEKLK 277 (312)
T ss_pred HHHHHH
Confidence 444443
No 293
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.78 E-value=23 Score=42.73 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=16.0
Q ss_pred eeEEEeccCCCCCcccccC
Q 002128 115 ATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~G 133 (962)
..|.-.|+||+|||+|+.-
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 4677889999999999843
No 294
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=28.65 E-value=41 Score=42.52 Aligned_cols=39 Identities=36% Similarity=0.453 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCceeEEEeccCCCCCcccccCCchHHHHHHHHHHhcCCC
Q 002128 103 KNVALSALMGINATIFAYGQTSSGKTYTMRGITEKAVVDIYNHIMNTPE 151 (962)
Q Consensus 103 ~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~ral~dLF~~i~~~~~ 151 (962)
..++..+| |.|.-|-+ +||+|||+.- +.-+++++...+.
T Consensus 68 ~eivq~AL-gkNtii~l--PTG~GKTfIA-------a~Vm~nh~rw~p~ 106 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIAL--PTGSGKTFIA-------AVIMKNHFEWRPK 106 (746)
T ss_pred HHHhHHhh-cCCeEEEe--ecCCCccchH-------HHHHHHHHhcCCc
Confidence 46788889 99987766 9999999864 3344455544443
No 295
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.60 E-value=1.5e+02 Score=35.40 Aligned_cols=67 Identities=25% Similarity=0.438 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc
Q 002128 373 VKHLQKEVARLEAELRTPDPS-REKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTSNPLD 439 (962)
Q Consensus 373 i~~LqkEi~~Le~eL~~~~~~-~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~~~l~ 439 (962)
+++.+++|++++..+...... ...+..|..++.+|..+..++-..+..++++++.+.+.......++
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 355566666666555432211 1223445555555555555555555555555555555444443333
No 296
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.45 E-value=39 Score=39.02 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=18.5
Q ss_pred HHHhcC-CceeEEEeccCCCCCcccc
Q 002128 107 LSALMG-INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 107 ~svl~G-~N~tIfAYGqTGSGKTyTM 131 (962)
..+-.| ..-+++-||+.|+|||+++
T Consensus 30 ~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 30 NGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred HHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 333344 4556889999999999886
No 297
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=28.36 E-value=24 Score=39.48 Aligned_cols=13 Identities=46% Similarity=0.624 Sum_probs=11.7
Q ss_pred EeccCCCCCcccc
Q 002128 119 AYGQTSSGKTYTM 131 (962)
Q Consensus 119 AYGqTGSGKTyTM 131 (962)
-.|++|||||+||
T Consensus 32 liGpSGsGKTTtL 44 (309)
T COG1125 32 LIGPSGSGKTTTL 44 (309)
T ss_pred EECCCCCcHHHHH
Confidence 4599999999998
No 298
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=28.06 E-value=31 Score=39.74 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=21.8
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
...++..++.+. ..|+-.|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 345566666643 67888899999999887
No 299
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=27.88 E-value=21 Score=45.27 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=16.7
Q ss_pred ceeEEEeccCCCCCcccccCC
Q 002128 114 NATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~Gi 134 (962)
|.-++..|.||||||++|..+
T Consensus 430 n~n~~I~G~tGsGKS~~~~~l 450 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQEL 450 (797)
T ss_pred ccceEEEcCCCCCHHHHHHHH
Confidence 445678899999999998543
No 300
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=27.88 E-value=2.3e+02 Score=28.63 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 402 QMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 402 ~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
.+..+++.|+.+...++-+++.++.+....
T Consensus 85 ~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 85 ELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 301
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.75 E-value=1.5e+02 Score=32.56 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 370 KQLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 370 ~~li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
...++.++++.++|.+.|.... .-..+..++.++.+++.++|.++.++..|..++.
T Consensus 138 ~arl~~l~~~~~rl~~ll~ka~----~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 138 EARLKNLEAEEERLLELLEKAK----TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556778888888888776433 2234556677777777777777776665554443
No 302
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=27.69 E-value=32 Score=41.77 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=32.6
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..+.||.+++.+..-..+.+. +.. +...+..|+-+|.+||||++..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~-----~~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQ-----ARK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCccHHHHH
Confidence 468999998876554555543 222 2346778999999999998865
No 303
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=27.63 E-value=38 Score=41.63 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=19.5
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.++..++.|.|+ ++..+||+|||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 345567889885 55569999999875
No 304
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=27.60 E-value=30 Score=39.97 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=15.6
Q ss_pred EEEeccCCCCCcccccCCchHH
Q 002128 117 IFAYGQTSSGKTYTMRGITEKA 138 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~Gii~ra 138 (962)
++..|.||||||+++ ++|..
T Consensus 2 ~lv~g~tGsGKt~~~--viP~l 21 (384)
T cd01126 2 VLVFAPTRSGKGVGF--VIPNL 21 (384)
T ss_pred eeEecCCCCCCccEE--Eccch
Confidence 578899999999987 34444
No 305
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=27.56 E-value=27 Score=34.21 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=11.8
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4677888888887654
No 306
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=27.50 E-value=2.5e+02 Score=26.40 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 370 KQLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRR 426 (962)
Q Consensus 370 ~~li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~ 426 (962)
..-+.+.+..+...+..|+....+.+ .-..+++|+..++......+.++..||+
T Consensus 11 Eekl~~cr~~le~ve~rL~~~eLs~e---~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 11 EEKLAQCRRRLEAVESRLRRRELSPE---ARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCChH---HHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34456677777777777777665433 3456778999999999998998888887
No 307
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=27.48 E-value=28 Score=41.86 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=19.2
Q ss_pred cCCceeEEEeccCCCCCcccc---cCCchH
Q 002128 111 MGINATIFAYGQTSSGKTYTM---RGITEK 137 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM---~Gii~r 137 (962)
.|.| ++.||+.|||||... .||.|-
T Consensus 197 GgHn--Ll~~GpPGtGKTmla~Rl~~lLPp 224 (490)
T COG0606 197 GGHN--LLLVGPPGTGKTMLASRLPGLLPP 224 (490)
T ss_pred cCCc--EEEecCCCCchHHhhhhhcccCCC
Confidence 4444 578999999999987 577663
No 308
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=27.42 E-value=62 Score=36.66 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=26.7
Q ss_pred CceeEEEeccCCCCCcccccCCchHHHHHHHHHHhcCCCCceEEE
Q 002128 113 INATIFAYGQTSSGKTYTMRGITEKAVVDIYNHIMNTPERDFTIK 157 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~Gii~ral~dLF~~i~~~~~~~f~V~ 157 (962)
.-+||+..|-.|||||.-| +.|..++.......|.|.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~--------QrL~~hl~~~~~ppYviN 54 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM--------QRLNSHLHAKKTPPYVIN 54 (366)
T ss_pred CCcEEEEEecCCCCchhHH--------HHHHHHHhhccCCCeEEe
Confidence 3569999999999999865 566666665555555543
No 309
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=27.12 E-value=27 Score=42.94 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=15.6
Q ss_pred eeEEEeccCCCCCcccccCC
Q 002128 115 ATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~Gi 134 (962)
-..+-.|+.|+|||||+.=|
T Consensus 202 ~l~~I~GPPGTGKT~TlvEi 221 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVEI 221 (649)
T ss_pred CceEeeCCCCCCceeeHHHH
Confidence 34567899999999998433
No 310
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=27.08 E-value=54 Score=35.16 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=21.2
Q ss_pred HHHhhchHHHHHHHhc-CCceeEEEeccCCCCCcccc
Q 002128 96 TVYEEGVKNVALSALM-GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 96 eVy~~~v~plV~svl~-G~N~tIfAYGqTGSGKTyTM 131 (962)
.+|...+.-+...+-. +..-.|.-.|.+|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3444433333332222 44455666799999999876
No 311
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=26.97 E-value=28 Score=35.54 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.1
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999765
No 312
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.93 E-value=85 Score=31.15 Aligned_cols=17 Identities=59% Similarity=0.823 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 002128 371 QLVKHLQKEVARLEAEL 387 (962)
Q Consensus 371 ~li~~LqkEi~~Le~eL 387 (962)
+++..|+..|.+++.++
T Consensus 16 ~~ve~L~s~lr~~E~E~ 32 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGEL 32 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555544443
No 313
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.93 E-value=3e+02 Score=32.39 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.9
Q ss_pred HHhcCCceeEEEeccCCCCCcccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+-.|+.-+|++.|+.|+|||.-+
T Consensus 15 ~~KkG~~ftlmvvG~sGlGKsTfi 38 (366)
T KOG2655|consen 15 SVKKGFDFTLMVVGESGLGKSTFI 38 (366)
T ss_pred HHhcCCceEEEEecCCCccHHHHH
Confidence 345899999999999999998765
No 314
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=26.88 E-value=22 Score=46.03 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=18.6
Q ss_pred CceeEEEeccCCCCCcccccCCc
Q 002128 113 INATIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~Gii 135 (962)
.|+-.+..|.||||||++|..++
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~li 496 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTNLL 496 (893)
T ss_pred CcccEEEECCCCCCHHHHHHHHH
Confidence 36777888999999999985543
No 315
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=26.82 E-value=43 Score=43.09 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=20.3
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
...+++.+-++- .|+..|+||||||..+
T Consensus 10 ~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 10 LPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 445565554443 4678999999999987
No 316
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.77 E-value=36 Score=42.59 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=15.1
Q ss_pred eEEEeccCCCCCccccc
Q 002128 116 TIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~ 132 (962)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999984
No 317
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=26.67 E-value=24 Score=42.09 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=20.3
Q ss_pred HhcCCceeEEEeccCCCCCcccccCCchH
Q 002128 109 ALMGINATIFAYGQTSSGKTYTMRGITEK 137 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM~Gii~r 137 (962)
+=.++|. +-.|++|+||||...++.+.
T Consensus 206 ve~~~Nl--i~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 206 VEPNYNL--IELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HhcCCcE--EEECCCCCCHHHHHHHHhHH
Confidence 3356665 56799999999998776665
No 318
>PRK06696 uridine kinase; Validated
Probab=26.63 E-value=53 Score=35.08 Aligned_cols=29 Identities=31% Similarity=0.240 Sum_probs=19.9
Q ss_pred HHHHHHHh---cCCceeEEEeccCCCCCcccc
Q 002128 103 KNVALSAL---MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 103 ~plV~svl---~G~N~tIfAYGqTGSGKTyTM 131 (962)
..+++.++ .+....|.--|.+|||||+..
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 33444443 355566777899999999876
No 319
>PRK08118 topology modulation protein; Reviewed
Probab=26.54 E-value=29 Score=35.61 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.2
Q ss_pred EEEeccCCCCCccc
Q 002128 117 IFAYGQTSSGKTYT 130 (962)
Q Consensus 117 IfAYGqTGSGKTyT 130 (962)
|+-.|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999964
No 320
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.52 E-value=88 Score=28.27 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQ 418 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q 418 (962)
|+-++.+|++|+.....++
T Consensus 20 I~LLQmEieELKEknn~l~ 38 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHhhHhH
Confidence 4445555555555554333
No 321
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=26.50 E-value=49 Score=34.84 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=21.0
Q ss_pred HHHHHHhc-CCc--eeEEEeccCCCCCcccc
Q 002128 104 NVALSALM-GIN--ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~-G~N--~tIfAYGqTGSGKTyTM 131 (962)
+-++.++. |+. ..+..+|.+|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 44677775 544 45789999999999876
No 322
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.38 E-value=1.8e+02 Score=34.51 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 368 SDKQLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEV 421 (962)
Q Consensus 368 ~~~~li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el 421 (962)
..+..|..|+.||.||+..|..... ....+.+++.+|-...+.+...+|..|
T Consensus 250 ~~~~hi~~l~~EveRlrt~l~~Aqk--~~~ek~~qy~~Ee~~~reen~rlQrkL 301 (552)
T KOG2129|consen 250 AEKLHIDKLQAEVERLRTYLSRAQK--SYQEKLMQYRAEEVDHREENERLQRKL 301 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456788899999999998875432 223344455555455555555555443
No 323
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=26.37 E-value=64 Score=38.70 Aligned_cols=120 Identities=22% Similarity=0.254 Sum_probs=79.9
Q ss_pred ChhhhhhhccCCCCCccceeeccCCCCcchHHHHHHHHHHHHhhcc-ccccccccccCHHHHHHHHHHHHHHHHHHhcCC
Q 002128 312 SKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEV-TNNAQVNMVVSDKQLVKHLQKEVARLEAELRTP 390 (962)
Q Consensus 312 SKLTrLLqdsLGGNskT~mI~tISPs~~~~eETlsTLrFAsRAk~I-kn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~ 390 (962)
.-|..||..+=|-||++-=++|..-......-+.+-|.|+.++.+- ...........-..-...+..-+.+|+-||.+.
T Consensus 509 A~~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~sa~EleeGk~lireltssvk~g~drEV~~~A~~~~~~~eRLkmElst~ 588 (790)
T PF07794_consen 509 AGLANLLRHIKGRNCQVPGVCNYAQAACYADMSAKELEEGKTLIRELTSSVKAGQDREVSFQAEGIVPGIERLKMELSTS 588 (790)
T ss_pred hHHHHHHHHHhcccccCCchhhHHhhhhhcccchhhhhhhHHHHHhhcccccCCccceeecccccccchhhhhheeeccc
Confidence 3577888888899999887777776666667788888998877543 333222221110111122333488888888765
Q ss_pred CCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 391 DPS-REKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 391 ~~~-~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
.+. ...-.+|.-|++||+-++-.+..+..+|..|+++-.+.
T Consensus 589 kDlekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reel 630 (790)
T PF07794_consen 589 KDLEKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREEL 630 (790)
T ss_pred cchhhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHH
Confidence 532 23456788899999999998888888887777665544
No 324
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=26.36 E-value=38 Score=35.91 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=20.3
Q ss_pred HHHHHhcC---CceeEEEeccCCCCCcccc
Q 002128 105 VALSALMG---INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G---~N~tIfAYGqTGSGKTyTM 131 (962)
-++.++.| .++.++.+|++|||||.-.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 35666644 5678999999999998654
No 325
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=26.34 E-value=39 Score=41.82 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=18.2
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
++..++.|.|+.+ .++||||||.+.
T Consensus 33 ai~~il~g~dvlv--~apTGsGKTl~y 57 (607)
T PRK11057 33 IIDAVLSGRDCLV--VMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHcCCCEEE--EcCCCchHHHHH
Confidence 3445678888654 469999999753
No 326
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=26.32 E-value=24 Score=35.32 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.1
Q ss_pred EEEeccCCCCCccc
Q 002128 117 IFAYGQTSSGKTYT 130 (962)
Q Consensus 117 IfAYGqTGSGKTyT 130 (962)
|+-.|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 327
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.05 E-value=26 Score=39.90 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.3
Q ss_pred CceeEEEeccCCCCCccccc
Q 002128 113 INATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~ 132 (962)
..-+|+-.|.||||||+.|.
T Consensus 142 ~~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLN 161 (312)
T ss_pred cCCcEEEECCCCCCHHHHHH
Confidence 34457888999999999983
No 328
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=26.02 E-value=34 Score=42.94 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=28.5
Q ss_pred eecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 82 FSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 82 F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+.|+.+++.+..-..+.+. +.. +...+..|+-+|.+|||||+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~-----~~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQ-----VEM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCcCHHHHH
Confidence 4566666655444444433 222 3456788999999999999854
No 329
>PRK04296 thymidine kinase; Provisional
Probab=26.01 E-value=24 Score=36.87 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=17.8
Q ss_pred eEEEeccCCCCCcccccCCchHH
Q 002128 116 TIFAYGQTSSGKTYTMRGITEKA 138 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~Gii~ra 138 (962)
.++-+|+.|+|||..+.|+..++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
Confidence 56789999999998876654443
No 330
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=25.76 E-value=4e+02 Score=35.74 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 343 QSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVD 422 (962)
Q Consensus 343 ETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~ 422 (962)
-+..|=+|-.+|++|+...... ...+-+.++++.+...+.-|.....+ ...|.+|-..+++|++++..+...+-
T Consensus 1176 L~~rt~rl~~~A~~l~~tGv~g---ay~s~f~~me~kl~~ir~il~~~svs---~~~i~~l~~~~~~lr~~l~~~~e~L~ 1249 (1758)
T KOG0994|consen 1176 LALRTHRLINRAKELKQTGVLG---AYASRFLDMEEKLEEIRAILSAPSVS---AEDIAQLASATESLRRQLQALTEDLP 1249 (1758)
T ss_pred HHHHHHHHHHHHHHhhhccCch---hhHhHHHHHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3566777888999988655443 34555677777788888777665543 23455666666666666666655555
Q ss_pred HHHHHHHHhh
Q 002128 423 ELRRKLQEDQ 432 (962)
Q Consensus 423 ~l~~~l~~~~ 432 (962)
.++..|-+.+
T Consensus 1250 ~~E~~Lsdi~ 1259 (1758)
T KOG0994|consen 1250 QEEETLSDIT 1259 (1758)
T ss_pred hhhhhhhhhh
Confidence 5555554443
No 331
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=25.68 E-value=72 Score=37.16 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=29.6
Q ss_pred cCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 88 FGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 88 F~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
|+-...|..++.- +-..++.|-.-.++-.|+.|||||+-+
T Consensus 27 ~g~~~~~~~l~~~----lkqt~~~gEsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 27 FGVQDEQKHLSEL----LKQTILHGESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred eehHHHHHHHHHH----HHHHHHhcCCCceEEEccCCCCceEee
Confidence 3444556666653 334567898889999999999999987
No 332
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=25.58 E-value=49 Score=41.19 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.2
Q ss_pred CceeEEEeccCCCCCcccc
Q 002128 113 INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM 131 (962)
....++..|+||||||...
T Consensus 255 ~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 255 VPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCccEEEECCCCCcHHHHH
Confidence 3345789999999999865
No 333
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=25.42 E-value=29 Score=35.26 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.4
Q ss_pred eEEEeccCCCCCccccc
Q 002128 116 TIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~ 132 (962)
.|+-.|++|||||..+.
T Consensus 3 ~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999999873
No 334
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=25.37 E-value=28 Score=38.88 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.6
Q ss_pred eEEEeccCCCCCccccc
Q 002128 116 TIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~ 132 (962)
-|+-+|++|+|||+...
T Consensus 60 ~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVAL 76 (284)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 58889999999998763
No 335
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=25.34 E-value=49 Score=34.85 Aligned_cols=31 Identities=26% Similarity=0.179 Sum_probs=22.5
Q ss_pred hHHHHHHHhc-CC--ceeEEEeccCCCCCccccc
Q 002128 102 VKNVALSALM-GI--NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 102 v~plV~svl~-G~--N~tIfAYGqTGSGKTyTM~ 132 (962)
+-+-++.++. |+ ...+.-+|++|+|||..+.
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 3455677775 43 4467889999999998773
No 336
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=25.29 E-value=48 Score=43.79 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=17.1
Q ss_pred eeEEEeccCCCCCcccc-------cCCchH
Q 002128 115 ATIFAYGQTSSGKTYTM-------RGITEK 137 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM-------~Gii~r 137 (962)
+.+.-+|+||||||..+ +|-.|+
T Consensus 31 ~l~~I~G~tGaGKStildai~~aLyg~~~r 60 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLLDAICLALYHETPR 60 (1047)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcCCCCC
Confidence 44566899999999876 565554
No 337
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.22 E-value=31 Score=30.12 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=13.4
Q ss_pred EEEeccCCCCCcccccC
Q 002128 117 IFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~G 133 (962)
++.+|..|+|||.+...
T Consensus 2 ~~~~g~~G~Gktt~~~~ 18 (99)
T cd01983 2 IVVTGKGGVGKTTLAAN 18 (99)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56678889999998744
No 338
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=25.18 E-value=48 Score=39.23 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=17.3
Q ss_pred eeEEEeccCCCCCcccccCCchHH
Q 002128 115 ATIFAYGQTSSGKTYTMRGITEKA 138 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~Gii~ra 138 (962)
.-++.+|+||||||.++ ++|..
T Consensus 45 ~h~lvig~tgSGKt~~~--viP~l 66 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF--VIPNL 66 (469)
T ss_pred eEEEEEeCCCCCcccee--eHhHH
Confidence 56889999999999987 34543
No 339
>PRK00736 hypothetical protein; Provisional
Probab=25.16 E-value=3.9e+02 Score=23.87 Aligned_cols=32 Identities=13% Similarity=0.299 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQE 430 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~ 430 (962)
-|..|.+.+-+-.++++.++.++..|..++.+
T Consensus 20 tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 20 TIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 340
>CHL00181 cbbX CbbX; Provisional
Probab=25.08 E-value=30 Score=38.81 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.3
Q ss_pred EEEeccCCCCCcccccC
Q 002128 117 IFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~G 133 (962)
|+-||++|+|||+....
T Consensus 62 ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 62 MSFTGSPGTGKTTVALK 78 (287)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67799999999998643
No 341
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=25.01 E-value=33 Score=33.17 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=12.6
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999864
No 342
>PRK13767 ATP-dependent helicase; Provisional
Probab=25.01 E-value=41 Score=43.58 Aligned_cols=23 Identities=35% Similarity=0.244 Sum_probs=17.4
Q ss_pred HHHhcCCceeEEEeccCCCCCcccc
Q 002128 107 LSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 107 ~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..+++|.|+.|. .+||||||.+.
T Consensus 42 ~~il~g~nvli~--APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLIS--SPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEEE--CCCCCcHHHHH
Confidence 345789886554 59999999875
No 343
>PRK09039 hypothetical protein; Validated
Probab=24.95 E-value=2e+02 Score=33.27 Aligned_cols=32 Identities=16% Similarity=0.406 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
+..++.+|...+.+...++.++++|.++++..
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555444
No 344
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=24.89 E-value=55 Score=41.08 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=25.2
Q ss_pred HHHhhchHHHHHHHh-cCCceeEEEeccCCCCCcccc
Q 002128 96 TVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 96 eVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM 131 (962)
.||.- +......++ .|.|-||+.-|.+|||||.|+
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 68 HIFAI-ADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 36643 333333333 589999999999999999997
No 345
>PHA02624 large T antigen; Provisional
Probab=24.89 E-value=50 Score=41.09 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=22.1
Q ss_pred HHHHhcCCce--eEEEeccCCCCCcccccC
Q 002128 106 ALSALMGINA--TIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 106 V~svl~G~N~--tIfAYGqTGSGKTyTM~G 133 (962)
+..++.|... ||+-||+.|||||+-..+
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~~s 450 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLAAA 450 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 5556677666 999999999999987643
No 346
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=24.69 E-value=32 Score=37.67 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.3
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
+.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999877
No 347
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.67 E-value=3.8e+02 Score=29.89 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHH
Q 002128 343 QSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLE 384 (962)
Q Consensus 343 ETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le 384 (962)
=++.++.++.....+...-........+.+ .|.+++..++
T Consensus 24 ~~~~~~l~~~~~a~~~q~~k~~~~~~~r~~--~L~~e~~s~Q 63 (247)
T COG3879 24 ISLAMLLAGVMLAAVFQTSKGESVRRARDL--DLVKELRSLQ 63 (247)
T ss_pred HHHHHHHHHHHHHHHHhhccCcchhhhhhh--HHHHHHHHHH
Confidence 456667776666666555444444333332 4444444443
No 348
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.51 E-value=1.6e+02 Score=36.92 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 002128 374 KHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTSN 436 (962)
Q Consensus 374 ~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~~ 436 (962)
..++.+++.+...|.... .+..++.+.++++++.++++.++.++..+.+++....+...
T Consensus 401 ~~~e~el~~l~~~l~~~~----~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~ 459 (650)
T TIGR03185 401 RELEEELAEVDKKISTIP----SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIE 459 (650)
T ss_pred HHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554432 12456666667777777777666666666666665554433
No 349
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.32 E-value=3.1e+02 Score=31.45 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 002128 372 LVKHLQKEVARLEAE 386 (962)
Q Consensus 372 li~~LqkEi~~Le~e 386 (962)
.+..++.++..+..+
T Consensus 210 eL~~lr~eL~~~~~~ 224 (325)
T PF08317_consen 210 ELEALRQELAEQKEE 224 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 350
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.24 E-value=1.4e+02 Score=27.04 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002128 395 EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQT 434 (962)
Q Consensus 395 ~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~ 434 (962)
+++..|.+|..|-+.|..+.......+..|+..+.+....
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~ 48 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ 48 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5666677666666666666666666666666666555433
No 351
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=24.24 E-value=56 Score=41.79 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=25.5
Q ss_pred HHHhhchHHHHHHHh-cCCceeEEEeccCCCCCcccc
Q 002128 96 TVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 96 eVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM 131 (962)
-||.- +.....+++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSL-AQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 46653 333333333 699999999999999999986
No 352
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.23 E-value=6.4e+02 Score=32.35 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=18.5
Q ss_pred CcceeeeCCCCC--eE---ecCceEEeeCCHHHHHHHHH
Q 002128 178 RNLKLLDDPEKG--TV---VEKLVEETANNDQHLRHLIS 211 (962)
Q Consensus 178 ~~L~i~ed~~~g--~~---V~gLte~~V~s~ee~~~lL~ 211 (962)
.++.+..||... +| -.|+..+.+.=...+..++.
T Consensus 367 cpI~L~~Dp~~~~ryy~~H~~GvH~V~L~wl~~L~~fl~ 405 (717)
T PF10168_consen 367 CPIRLHRDPLNPDRYYCYHNAGVHSVTLPWLSALQEFLE 405 (717)
T ss_pred cceEEEecCCCCceEEEEecCccEEEEeccHHHHHHHhc
Confidence 467787777432 22 34666666654444444443
No 353
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.19 E-value=1.1e+02 Score=33.55 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhh
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTSNPLDPSVKK 444 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~~~l~~~l~~ 444 (962)
.+.+.++.++|..++..+++++++++.++......+..|+..+++
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555566666666666666665555555554544444443
No 354
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=24.17 E-value=32 Score=34.14 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=17.4
Q ss_pred eeEEEeccCCCCCcccccCC
Q 002128 115 ATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~Gi 134 (962)
..|+-+|.-|||||+-..|+
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l 35 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGL 35 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 56899999999999988664
No 355
>PRK08233 hypothetical protein; Provisional
Probab=24.17 E-value=33 Score=34.58 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=12.3
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|+--|++|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999876
No 356
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.12 E-value=33 Score=40.49 Aligned_cols=20 Identities=40% Similarity=0.413 Sum_probs=16.5
Q ss_pred eeEEEeccCCCCCcccccCC
Q 002128 115 ATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~Gi 134 (962)
-.|.-.|++|+|||+|+..+
T Consensus 207 ~ii~lvGptGvGKTTt~akL 226 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKL 226 (407)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35678899999999998654
No 357
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.11 E-value=2.3e+02 Score=35.33 Aligned_cols=7 Identities=29% Similarity=0.885 Sum_probs=3.3
Q ss_pred CCceeEE
Q 002128 112 GINATIF 118 (962)
Q Consensus 112 G~N~tIf 118 (962)
|+-+.+|
T Consensus 128 G~ev~~f 134 (652)
T COG2433 128 GTEVSVF 134 (652)
T ss_pred CceeEee
Confidence 4544443
No 358
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=24.11 E-value=31 Score=40.98 Aligned_cols=19 Identities=42% Similarity=0.429 Sum_probs=16.1
Q ss_pred eeEEEeccCCCCCcccccC
Q 002128 115 ATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~G 133 (962)
..|+-.|++|+|||+|+.-
T Consensus 242 ~vI~LVGptGvGKTTTiaK 260 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK 260 (436)
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 4678899999999999843
No 359
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=24.05 E-value=43 Score=41.04 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=29.5
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.|.||.+++.+..-+.+.+ .+.. +...+..|+-+|.+||||++..
T Consensus 215 ~~~f~~iiG~S~~m~~~~~-----~i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQ-----TILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred ccchhheeeCCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 3667777765543333332 2222 3567889999999999998764
No 360
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.00 E-value=4e+02 Score=32.99 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=10.6
Q ss_pred HhHhHHHhhhhceeeecCccc
Q 002128 504 ANRALEVLQKEVACHRLGNQD 524 (962)
Q Consensus 504 ~~~~~~~~~~ev~c~~~~~~~ 524 (962)
++.+++.+.|||=--++..++
T Consensus 351 i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 351 IQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 344466666665444443333
No 361
>PRK06217 hypothetical protein; Validated
Probab=23.95 E-value=33 Score=35.33 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=12.9
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788899999999764
No 362
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=23.90 E-value=61 Score=40.63 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=55.2
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCch-------------HHHHHHHHHH
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITE-------------KAVVDIYNHI 146 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~-------------ral~dLF~~i 146 (962)
+.|....=|.|...|...|.. ++..+-.|.... +.+|.+||||++++..+.. ..+..+++.+
T Consensus 3 ~~~~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-ll~Gl~gs~ka~lia~l~~~~~r~vLIVt~~~~~A~~l~~dL 77 (652)
T PRK05298 3 KPFKLVSPYKPAGDQPQAIEE----LVEGIEAGEKHQ-TLLGVTGSGKTFTMANVIARLQRPTLVLAHNKTLAAQLYSEF 77 (652)
T ss_pred CCcccccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEEcCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHH
Confidence 356667778899999888875 444444554233 4789999999999854221 2345565555
Q ss_pred hcC-CCCceEEEeeeEEEeccccc
Q 002128 147 MNT-PERDFTIKISGLEIYNENVR 169 (962)
Q Consensus 147 ~~~-~~~~f~V~vS~lEIYnE~V~ 169 (962)
..- ++..+...+||+--|.-..|
T Consensus 78 ~~~~~~~~v~~f~s~~~~~~~~~~ 101 (652)
T PRK05298 78 KEFFPENAVEYFVSYYDYYQPEAY 101 (652)
T ss_pred HHhcCCCeEEEeCChhhccCcccc
Confidence 333 34446677888888776654
No 363
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.64 E-value=2.3e+02 Score=26.29 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 002128 373 VKHLQKEVARLEA 385 (962)
Q Consensus 373 i~~LqkEi~~Le~ 385 (962)
|.-||-||..|+.
T Consensus 20 I~LLqmEieELKe 32 (79)
T PRK15422 20 ITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666666654
No 364
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=23.59 E-value=38 Score=37.75 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.0
Q ss_pred eeEEEeccCCCCCcccccC
Q 002128 115 ATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~G 133 (962)
.+|...|++|+|||.|..-
T Consensus 73 ~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4566669999999999843
No 365
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=23.55 E-value=41 Score=38.71 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=15.1
Q ss_pred ceeEEEeccCCCCCcccc
Q 002128 114 NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM 131 (962)
+.-|+-.|.+|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 445888999999999875
No 366
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=23.53 E-value=89 Score=35.29 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=15.0
Q ss_pred eEEEeccCCCCCccccc
Q 002128 116 TIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~ 132 (962)
.|+-.|.+|||||..+.
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999999883
No 367
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=23.50 E-value=37 Score=34.40 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.2
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
++-+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999865
No 368
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=23.43 E-value=46 Score=42.33 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..+++|.|..+.| +||||||.+.
T Consensus 44 ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 44 AAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 445678999976655 8999999874
No 369
>PRK00846 hypothetical protein; Provisional
Probab=23.39 E-value=4.7e+02 Score=24.18 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 375 HLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 375 ~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
.+...|..|+..+. -.+.-|..|.+.+-+..++++.++.++.-|..++.+.+
T Consensus 10 ~le~Ri~~LE~rlA------fQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLS------FQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555442 22334555555555555555555555555555555443
No 370
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=23.35 E-value=57 Score=34.57 Aligned_cols=29 Identities=24% Similarity=0.162 Sum_probs=21.1
Q ss_pred HHHHHHh-cCC--ceeEEEeccCCCCCccccc
Q 002128 104 NVALSAL-MGI--NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 104 plV~svl-~G~--N~tIfAYGqTGSGKTyTM~ 132 (962)
+-++.++ .|+ ..++.-+|++|+|||+...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 3456666 454 5678889999999998763
No 371
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.32 E-value=37 Score=43.29 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.7
Q ss_pred eeEEEeccCCCCCccccc
Q 002128 115 ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~ 132 (962)
..|.-.|+||+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 467889999999999984
No 372
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=23.24 E-value=43 Score=40.96 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=30.3
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.|.||.+++.+..-+.+.+. +.. +...+..|+-+|.+||||++..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~-----i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRAL-----VRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred ccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 47788877765433333332 222 3567889999999999997765
No 373
>PRK10867 signal recognition particle protein; Provisional
Probab=23.23 E-value=73 Score=38.09 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.9
Q ss_pred ceeEEEeccCCCCCccccc
Q 002128 114 NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~ 132 (962)
...|+..|.+|||||+|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3567888999999999973
No 374
>PRK01172 ski2-like helicase; Provisional
Probab=23.23 E-value=50 Score=41.25 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=16.6
Q ss_pred HHhcCCceeEEEeccCCCCCcccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..|.| ++..++||||||...
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~a 54 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLIA 54 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHHH
Confidence 3467776 566789999999863
No 375
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=23.20 E-value=64 Score=41.22 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.9
Q ss_pred ceeEEEeccCCCCCcccc
Q 002128 114 NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM 131 (962)
.++++-+|+||+|||+..
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 357899999999999987
No 376
>PRK02793 phi X174 lysis protein; Provisional
Probab=23.13 E-value=4.4e+02 Score=23.82 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQE 430 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~ 430 (962)
-|..|.+.+-+..++++.++.++..|..++.+
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444445555555555544444443
No 377
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.12 E-value=35 Score=40.53 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=16.5
Q ss_pred ceeEEEeccCCCCCcccccC
Q 002128 114 NATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~G 133 (962)
+..|.-.|++|+|||+|+.-
T Consensus 191 g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34678889999999999843
No 378
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=23.11 E-value=32 Score=35.66 Aligned_cols=15 Identities=40% Similarity=0.339 Sum_probs=12.7
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|.--|.+|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999987
No 379
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.06 E-value=3.4e+02 Score=27.87 Aligned_cols=13 Identities=8% Similarity=0.128 Sum_probs=7.2
Q ss_pred HHHHHHHHHhccC
Q 002128 289 MTLTTVIRKLSVG 301 (962)
Q Consensus 289 ~aLg~VI~aLs~g 301 (962)
.++.+++..|...
T Consensus 33 ~~v~k~Ld~L~~~ 45 (169)
T PF07106_consen 33 TAVQKALDSLVEE 45 (169)
T ss_pred HHHHHHHHHHHhC
Confidence 3455666666543
No 380
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=23.00 E-value=32 Score=35.81 Aligned_cols=15 Identities=40% Similarity=0.328 Sum_probs=12.6
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|.-.|.+|||||+..
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999875
No 381
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=22.89 E-value=35 Score=36.23 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=14.2
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999875
No 382
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=22.87 E-value=33 Score=32.24 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.6
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999976
No 383
>PRK14531 adenylate kinase; Provisional
Probab=22.84 E-value=38 Score=34.97 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=13.7
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
-|+.+|..|||||+..
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999874
No 384
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.84 E-value=99 Score=35.62 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhhhccc
Q 002128 374 KHLQKEVARLEAELRTPDPSR-EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTSNPLDPSVKKCLSYS 449 (962)
Q Consensus 374 ~~LqkEi~~Le~eL~~~~~~~-~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~~~l~~~l~~~~~~~ 449 (962)
++|+-..+.|..+|-....-. .-..++++||.-+..++++...+|.+++++.++.++..++...|...+...+.+.
T Consensus 102 ~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layq 178 (401)
T PF06785_consen 102 EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQ 178 (401)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 344444555555553322211 2234678899999999999999999999999999888877777766666655443
No 385
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=22.77 E-value=39 Score=32.78 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.0
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34567899999999987
No 386
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.72 E-value=6.3e+02 Score=23.97 Aligned_cols=33 Identities=30% Similarity=0.604 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
++..++.+++.+..+.+..+.++.+++.++.+.
T Consensus 71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555443
No 387
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=22.62 E-value=34 Score=41.72 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=14.1
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999875
No 388
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=22.60 E-value=65 Score=34.99 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=23.1
Q ss_pred hHHHHHHHhc--CCceeEEEeccCCCCCcccc
Q 002128 102 VKNVALSALM--GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 102 v~plV~svl~--G~N~tIfAYGqTGSGKTyTM 131 (962)
+..+.+.+.. .-...|.-||..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 66778899999999999865
No 389
>PTZ00110 helicase; Provisional
Probab=22.48 E-value=50 Score=40.37 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=18.4
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.|.|. ++.++||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 4557789876 45679999999864
No 390
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.43 E-value=55 Score=37.06 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.5
Q ss_pred HHhcCCceeEEEeccCCCCCcccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
++-+|+.--|++.|.||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 556899999999999999999876
No 391
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=22.42 E-value=32 Score=31.97 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=13.3
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999876
No 392
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.40 E-value=38 Score=37.11 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.6
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
-.+..+|++|||||+.+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36778999999999877
No 393
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=22.22 E-value=40 Score=34.14 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=13.7
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999976
No 394
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.19 E-value=2.9e+02 Score=34.21 Aligned_cols=57 Identities=30% Similarity=0.409 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 372 LVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 372 li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
-++.|++++..|+..+...+-+ -.++.+|..|.++|.+.++.++.+++.|.+++.+.
T Consensus 309 E~e~lq~~~d~Lk~~Ie~Q~iS---~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~ 365 (581)
T KOG0995|consen 309 EIEKLQKENDELKKQIELQGIS---GEDVERMNLERNKLKRELNKIQSELDRLSKEVWEL 365 (581)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3556667777777766555433 23456677777788888888888887777776544
No 395
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=22.14 E-value=66 Score=37.21 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=47.1
Q ss_pred cceecCCCCchhHHHhhchHHHHHHHh-cCCceeEEEeccCCCCCcccc--cCCchHHHHHHHHHHhcCCCCceEEEeee
Q 002128 84 FDKVFGPSCLTETVYEEGVKNVALSAL-MGINATIFAYGQTSSGKTYTM--RGITEKAVVDIYNHIMNTPERDFTIKISG 160 (962)
Q Consensus 84 FD~VF~~~asQeeVy~~~v~plV~svl-~G~N~tIfAYGqTGSGKTyTM--~Gii~ral~dLF~~i~~~~~~~f~V~vS~ 160 (962)
|-.|=+.+.++.+-=.+.+..+|+.++ .||. +|.||..|.|||+.+ .+|.--+-.++|..-.. +..-.++||
T Consensus 60 f~~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~--epGkvlyvs- 134 (402)
T COG3598 60 FIQVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVK--EPGKVLYVS- 134 (402)
T ss_pred eeEehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHHHHHHHHHhhHHHhccccc--CCCeEEEEE-
Confidence 336655555554433445666777665 4554 578999999999988 35555555677764222 222234444
Q ss_pred EEEecccc
Q 002128 161 LEIYNENV 168 (962)
Q Consensus 161 lEIYnE~V 168 (962)
+|.|.|.+
T Consensus 135 lEl~re~~ 142 (402)
T COG3598 135 LELYREDI 142 (402)
T ss_pred eccChHHH
Confidence 46665543
No 396
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=22.12 E-value=56 Score=36.89 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=18.0
Q ss_pred HHhcC-CceeEEEeccCCCCCcccc
Q 002128 108 SALMG-INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 108 svl~G-~N~tIfAYGqTGSGKTyTM 131 (962)
.+-.| ...+++-||+.|+|||.+.
T Consensus 29 ~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 29 AIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 33345 3456889999999999876
No 397
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=22.10 E-value=4.7e+02 Score=29.93 Aligned_cols=158 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhhhcccCcC-
Q 002128 374 KHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTSNPLDPSVKKCLSYSGVL- 452 (962)
Q Consensus 374 ~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~- 452 (962)
..|.+++..+.+.-. +...+...|...+.+++.++|....++.+++.+-.+.....+.+-..++.-....+..
T Consensus 30 ~El~~~~~~~~ekRd------eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~ 103 (294)
T COG1340 30 DELRKEASELAEKRD------ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN 103 (294)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred CCCCCCccccchhhhhhhhhhhccccCCCCCcchhhhhHHhhHHHHHHhH--HHhHhHHHhhhhceeeecCccchHHHHH
Q 002128 453 SPKLDGKELGRFDKIRKTMSRQSMRQSSTAPFTLMHEIRKLEHLQEQLGE--EANRALEVLQKEVACHRLGNQDAAETIA 530 (962)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ev~c~~~~~~~~~~~~~ 530 (962)
....+-..+...-..-......+.. +......++..|..|+.+.+.... +.+..+..+..|+.-++....+-...++
T Consensus 104 ~~~~~~~~ler~i~~Le~~~~T~~L-~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~ 182 (294)
T COG1340 104 LGGRSIKSLEREIERLEKKQQTSVL-TPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQ 182 (294)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 002128 531 RLQAEIRE 538 (962)
Q Consensus 531 ~~~~~~~~ 538 (962)
.+..++..
T Consensus 183 ~la~eaqe 190 (294)
T COG1340 183 ELANEAQE 190 (294)
T ss_pred HHHHHHHH
No 398
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=21.95 E-value=38 Score=34.33 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.5
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+-.|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999854
No 399
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.90 E-value=60 Score=37.22 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=19.8
Q ss_pred HHHHHhcCC-ceeEEEeccCCCCCccccc
Q 002128 105 VALSALMGI-NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 105 lV~svl~G~-N~tIfAYGqTGSGKTyTM~ 132 (962)
+...+-.|. ...++-||+.|+|||++..
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 444444553 4478889999999998863
No 400
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.89 E-value=4.9e+02 Score=25.90 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 002128 370 KQLVKHLQKEVARLEAELR 388 (962)
Q Consensus 370 ~~li~~LqkEi~~Le~eL~ 388 (962)
.+.++++.-|+..|+.++.
T Consensus 22 ~s~lr~~E~E~~~l~~el~ 40 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELA 40 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543
No 401
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=21.83 E-value=3.4e+02 Score=26.96 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 344 SRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSR-----EKDLKIQQMEMEIEELKRQRDVAQ 418 (962)
Q Consensus 344 TlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~~~~~-----~ke~~iq~le~eieeLk~~~d~~q 418 (962)
..+.-.||+.+=...|...- ...+...-+++|..-|+.+..++...-... ..-..+..++..+..++...+.++
T Consensus 7 dFd~~~fan~ll~~~~~~~~-~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~ 85 (132)
T PF10392_consen 7 DFDPVQFANDLLKSTNNNSD-SELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQ 85 (132)
T ss_pred CCCHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556777777665555433 334556667778888888777765432111 112234445555555555555555
Q ss_pred HHHHHHHHHHH
Q 002128 419 SEVDELRRKLQ 429 (962)
Q Consensus 419 ~el~~l~~~l~ 429 (962)
...+.|+.++.
T Consensus 86 ~s~~RL~~eV~ 96 (132)
T PF10392_consen 86 SSYERLRSEVI 96 (132)
T ss_pred HHHHHHHHHHh
Confidence 55555554443
No 402
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=21.83 E-value=45 Score=42.30 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=24.6
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccccCCchHH
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTMRGITEKA 138 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~ra 138 (962)
.++.-+..+....++-||++|+|||+...|+..+.
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34544445555567899999999999987764443
No 403
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=21.80 E-value=53 Score=43.61 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 103 KNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 103 ~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..+|..++.|.++.+.+ +||+|||.+-
T Consensus 466 ~eaI~aiL~GrDVLVim--PTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFVLM--PTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEEEc--CCCccHHHHH
Confidence 45677789999965555 9999999874
No 404
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=21.73 E-value=39 Score=33.63 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=13.4
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778999999999765
No 405
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=21.69 E-value=54 Score=39.27 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=25.8
Q ss_pred ecceecCCCCchhHHHhhchHHHHHHHhcCC-ceeEEEeccCCCCCcccc
Q 002128 83 SFDKVFGPSCLTETVYEEGVKNVALSALMGI-NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 83 ~FD~VF~~~asQeeVy~~~v~plV~svl~G~-N~tIfAYGqTGSGKTyTM 131 (962)
+||.|++.+ .+ +..+...+-.|. ..+++-||+.|+|||.+.
T Consensus 15 ~~~diiGq~----~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILGQD----AV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcCcH----HH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 567777543 33 233333444554 345677999999999887
No 406
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=21.69 E-value=34 Score=36.46 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.9
Q ss_pred eeEEEeccCCCCCcccccCCchHHH
Q 002128 115 ATIFAYGQTSSGKTYTMRGITEKAV 139 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~Gii~ral 139 (962)
+.|..||.+|.|||+...|+.-|++
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~ 47 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAV 47 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHH
Confidence 6889999999999999998776665
No 407
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.68 E-value=4.5e+02 Score=24.75 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 002128 372 LVKHLQKEVARLEAELRTP 390 (962)
Q Consensus 372 li~~LqkEi~~Le~eL~~~ 390 (962)
-+..|+.++..|+..++..
T Consensus 20 e~~~L~~~~~~L~~~~R~~ 38 (100)
T PF01486_consen 20 EIAKLRKENESLQKELRHL 38 (100)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3556777777777766544
No 408
>COG1162 Predicted GTPases [General function prediction only]
Probab=21.66 E-value=86 Score=35.78 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=22.5
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccccCCch
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTMRGITE 136 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~ 136 (962)
..+...+.|. .+||+ ||+|-|||.-+--+.|
T Consensus 156 ~~l~~~l~~~-~svl~-GqSGVGKSSLiN~L~p 186 (301)
T COG1162 156 EELAELLAGK-ITVLL-GQSGVGKSTLINALLP 186 (301)
T ss_pred HHHHHHhcCC-eEEEE-CCCCCcHHHHHHhhCc
Confidence 4455667777 55554 9999999998866555
No 409
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.66 E-value=53 Score=38.69 Aligned_cols=26 Identities=35% Similarity=0.295 Sum_probs=19.6
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..|..++.|.++-..| +||||||-+.
T Consensus 90 ~aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEEe--ccCCCchhhh
Confidence 3455678898875555 9999999876
No 410
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=21.54 E-value=69 Score=40.62 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.8
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
++++-+|+||+|||++.
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 46889999999999876
No 411
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=21.54 E-value=2.6e+02 Score=33.52 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHH
Q 002128 345 RNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAE 386 (962)
Q Consensus 345 lsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~e 386 (962)
--.|+|-++.+-++++|+.+. .+-+.-+.+|++.|+.|+.-
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~-l~fe~pi~ele~ki~el~~~ 95 (431)
T PLN03230 55 TGALKILNRFKPLKNKPKPVT-LPFEKPIVDLENRIDEVREL 95 (431)
T ss_pred ccHHHHHHhcCCCCCCCCCCc-cchhhHHHHHHHHHHHHHhh
Confidence 346899999999999999654 45556678888888888763
No 412
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.51 E-value=2.3e+02 Score=29.12 Aligned_cols=7 Identities=14% Similarity=0.392 Sum_probs=3.0
Q ss_pred hhhhhhh
Q 002128 313 KLTRILQ 319 (962)
Q Consensus 313 KLTrLLq 319 (962)
.+++.|-
T Consensus 34 ~v~k~Ld 40 (169)
T PF07106_consen 34 AVQKALD 40 (169)
T ss_pred HHHHHHH
Confidence 3444443
No 413
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=21.48 E-value=38 Score=33.22 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.1
Q ss_pred cCCceeEEEeccCCCCCcccc
Q 002128 111 MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM 131 (962)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 467778899999999998875
No 414
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.45 E-value=2.2e+02 Score=30.28 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=6.9
Q ss_pred HHHHHHHHHhcc
Q 002128 289 MTLTTVIRKLSV 300 (962)
Q Consensus 289 ~aLg~VI~aLs~ 300 (962)
.+...||.+|.+
T Consensus 30 ~~VKdvlq~LvD 41 (188)
T PF03962_consen 30 MSVKDVLQSLVD 41 (188)
T ss_pred hhHHHHHHHHhc
Confidence 445566666654
No 415
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=21.44 E-value=37 Score=38.06 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=21.1
Q ss_pred hHHHHHHHhcC---CceeEEEeccCCCCCcccc
Q 002128 102 VKNVALSALMG---INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 102 v~plV~svl~G---~N~tIfAYGqTGSGKTyTM 131 (962)
+..++-.++.| .-..+|.||..|+|||..+
T Consensus 61 l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 61 LQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 33444445555 4457999999999998876
No 416
>PF14383 VARLMGL: DUF761-associated sequence motif
Probab=21.43 E-value=50 Score=25.80 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=15.4
Q ss_pred CCchhhhHHHHHHHHHhhcc
Q 002128 908 HDPRHVQESAEIVAKLVGFC 927 (962)
Q Consensus 908 ~d~~hv~eSa~~Vaklv~~~ 927 (962)
.+-.+-..+..+||+|+|+-
T Consensus 6 ~~~~~~~r~P~vvarLMGld 25 (34)
T PF14383_consen 6 DDESPGTRAPGVVARLMGLD 25 (34)
T ss_pred ccccccccChhHHHHHhccc
Confidence 34556677889999999974
No 417
>PRK00300 gmk guanylate kinase; Provisional
Probab=21.39 E-value=41 Score=34.93 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.3
Q ss_pred ceeEEEeccCCCCCcccc
Q 002128 114 NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM 131 (962)
+..|.-.|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345778899999999654
No 418
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=21.39 E-value=28 Score=37.40 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=10.9
Q ss_pred eccCCCCCcccc
Q 002128 120 YGQTSSGKTYTM 131 (962)
Q Consensus 120 YGqTGSGKTyTM 131 (962)
-|++|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999987
No 419
>PRK14532 adenylate kinase; Provisional
Probab=21.37 E-value=43 Score=34.40 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=13.5
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+..|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998764
No 420
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=21.21 E-value=61 Score=39.35 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=20.1
Q ss_pred HHHHhcCCce------eEEEeccCCCCCccccc
Q 002128 106 ALSALMGINA------TIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 106 V~svl~G~N~------tIfAYGqTGSGKTyTM~ 132 (962)
+..+++|++. .|+-.|++|||||+.|.
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4455666444 46789999999999885
No 421
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.14 E-value=66 Score=38.84 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=25.4
Q ss_pred ecceecCCCCchhHHHhhchHHHHHHHhcCC-ceeEEEeccCCCCCcccc
Q 002128 83 SFDKVFGPSCLTETVYEEGVKNVALSALMGI-NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 83 ~FD~VF~~~asQeeVy~~~v~plV~svl~G~-N~tIfAYGqTGSGKTyTM 131 (962)
+||.|.++ +.+ ...+...+-.|. ...++-||+.|+|||++.
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 56666654 333 222333333443 345889999999999886
No 422
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.09 E-value=2.1e+02 Score=32.82 Aligned_cols=65 Identities=26% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002128 370 KQLVKHLQKEVARLEAELRTPDPSR--------------EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQT 434 (962)
Q Consensus 370 ~~li~~LqkEi~~Le~eL~~~~~~~--------------~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~ 434 (962)
+.++..|++++..++.+......-. ..+.+++.++.+.+++.+++..++.+.+++.+++.+.+..
T Consensus 8 ~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 8 DLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 423
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=21.01 E-value=1.3e+02 Score=39.53 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=19.9
Q ss_pred eeeecCCCCCceEEEEe--------------ehhHHHHHHHhhhcC
Q 002128 805 YLLFKGDPADQIYMEVE--------------LRRLTWLQQHLSELG 836 (962)
Q Consensus 805 fLlfkgdp~d~iymeve--------------~rrl~~lk~~~~~~g 836 (962)
-.+|+-|....||+=|| -+.+.--+.||.+++
T Consensus 913 A~v~~~~~~~~lyFVvETKg~~~~~~LR~~E~~KI~cakkhF~als 958 (986)
T PRK15483 913 MYVIEKDGGKSLNLVVETKAVDEAENLRVGEERKIDAAKKFFDMLS 958 (986)
T ss_pred EEEEEeCCceEEEEEEEcCCCCchhhcCHHHHHHHHHHHHHHHHHh
Confidence 34566677778887655 345566667776543
No 424
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.00 E-value=2.1e+02 Score=34.72 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCChh--HHHHHHHHHHHHHHHHHHHHH
Q 002128 339 SHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPSRE--KDLKIQQMEMEIEELKRQRDV 416 (962)
Q Consensus 339 ~~~eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~~~~~~~--ke~~iq~le~eieeLk~~~d~ 416 (962)
+--.+|+.||--..+. ++.+. . ....--+.|++|.++|+......+.... .+...+++.++.++|+.++..
T Consensus 55 DTP~DTlrTlva~~k~--~r~~~--~---~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~ 127 (472)
T TIGR03752 55 DTPADTLRTLVAEVKE--LRKRL--A---KLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQ 127 (472)
T ss_pred CCccchHHHHHHHHHH--HHHHH--H---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3446788888554332 22110 0 1111224566666666654332221111 111223455556666666666
Q ss_pred HHHHHHHHHHHHH
Q 002128 417 AQSEVDELRRKLQ 429 (962)
Q Consensus 417 ~q~el~~l~~~l~ 429 (962)
++..+++|.+++.
T Consensus 128 ~~~~l~~l~~~l~ 140 (472)
T TIGR03752 128 LQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666655553
No 425
>PHA01747 putative ATP-dependent protease
Probab=20.95 E-value=46 Score=39.10 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=25.1
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.-|+|++-..+-|.-++=.|+.|+||||+.
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 557777666788888999999999999986
No 426
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=20.78 E-value=2.8e+02 Score=34.96 Aligned_cols=16 Identities=50% Similarity=0.758 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhc
Q 002128 373 VKHLQKEVARLEAELR 388 (962)
Q Consensus 373 i~~LqkEi~~Le~eL~ 388 (962)
..+|+++|++|++++.
T Consensus 81 r~~L~~everLraei~ 96 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQ 96 (632)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777888877765
No 427
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.75 E-value=2.7e+02 Score=23.36 Aligned_cols=31 Identities=26% Similarity=0.532 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 396 KDLKIQQMEMEIEELKRQRDVAQSEVDELRR 426 (962)
Q Consensus 396 ke~~iq~le~eieeLk~~~d~~q~el~~l~~ 426 (962)
+...++.|+.++..|..+...++.++..|++
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667777777777777777777776654
No 428
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=20.64 E-value=2.1e+02 Score=28.92 Aligned_cols=65 Identities=22% Similarity=0.313 Sum_probs=44.3
Q ss_pred eehhHHHHHHHhhhcCCCCCCCCCCCCCcccHHHhHHHHHHHHHHHHHHHHhhcCHHHHHHhHhhccc
Q 002128 821 ELRRLTWLQQHLSELGNASPLPVAGGEPTISLSSSIRALKREREFLAKRLSSRLTAEERDSLYIKWDV 888 (962)
Q Consensus 821 e~rrl~~lk~~~~~~g~~~~~~~~~~~~~~s~~sS~kaL~rER~~L~k~m~~rl~~~Ere~ly~kwgi 888 (962)
|||||+-||+.|.. .+..|+. ++..-..-....+.|-+..|-..+.++.-+...+=|-.+.|+.+
T Consensus 53 EL~~Ls~LK~~y~~-~~~~~~~--~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L 117 (131)
T PF04859_consen 53 ELRRLSELKRRYRK-KQSDPSP--QVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKL 117 (131)
T ss_pred HHHHHHHHHHHHHc-CCCCCCc--cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999976 2222221 11111223355677888888889999888888887777777654
No 429
>PRK04040 adenylate kinase; Provisional
Probab=20.50 E-value=44 Score=35.05 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=14.0
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999876
No 430
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=20.48 E-value=45 Score=34.45 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.6
Q ss_pred cCCceeEEEeccCCCCCccc
Q 002128 111 MGINATIFAYGQTSSGKTYT 130 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyT 130 (962)
..++..|+-+|.+||||+..
T Consensus 19 a~~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELL 38 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHH
T ss_pred hCCCCCEEEEcCCCCcHHHH
Confidence 47889999999999999765
No 431
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.38 E-value=43 Score=39.96 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.1
Q ss_pred eeEEEeccCCCCCccccc
Q 002128 115 ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~ 132 (962)
..|+..|++|+|||+|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999983
No 432
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=20.27 E-value=40 Score=42.57 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=17.1
Q ss_pred ceeEEEeccCCCCCcccccC
Q 002128 114 NATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~G 133 (962)
|.-++..|.||||||+++.-
T Consensus 434 ~~n~~I~G~tGsGKS~~~~~ 453 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLNF 453 (785)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 66788899999999999843
No 433
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.27 E-value=57 Score=39.68 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.3
Q ss_pred ceeEEEeccCCCCCcccc
Q 002128 114 NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM 131 (962)
...++-||+.|+|||.+.
T Consensus 36 ~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345789999999999887
No 434
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=20.19 E-value=4.3e+02 Score=25.02 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKL 428 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l 428 (962)
+++|.+|+++++.+...++.++++.+-+-
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrq 60 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQ 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888888888887654443
No 435
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=20.12 E-value=74 Score=35.67 Aligned_cols=30 Identities=27% Similarity=0.148 Sum_probs=22.2
Q ss_pred hHHHHHHHhcCC---ceeEEEeccCCCCCcccc
Q 002128 102 VKNVALSALMGI---NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 102 v~plV~svl~G~---N~tIfAYGqTGSGKTyTM 131 (962)
..+-++.++.|- ...+.-||.+|||||..+
T Consensus 80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 80 GSKELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 345566777653 556789999999999876
No 436
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.08 E-value=4.7e+02 Score=26.68 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
+..|+++++.....++.....+++|++.+.
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~ 72 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAK 72 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 437
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=20.07 E-value=70 Score=38.09 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=25.9
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
+..-++.+-+|....-|..|.-||||||.+.
T Consensus 37 l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~ 67 (416)
T PF10923_consen 37 LDRDLDRVADGGSSFKFIRGEYGSGKTFFLR 67 (416)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCCCcHHHHHH
Confidence 3344677889999999999999999999873
No 438
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=20.03 E-value=36 Score=42.98 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=29.6
Q ss_pred EEEeccCCCCCcccccCCchHHHHHHHHHHhcCCCCce--EEEeeeEEE-eccccccc-ccCCC
Q 002128 117 IFAYGQTSSGKTYTMRGITEKAVVDIYNHIMNTPERDF--TIKISGLEI-YNENVRDL-LNSES 176 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~Gii~ral~dLF~~i~~~~~~~f--~V~vS~lEI-YnE~V~DL-L~~~~ 176 (962)
++..|.||||||.+|.+++ +.+....++.+ -.+..|++- |+... |. |+|-.
T Consensus 188 ~li~GttGSGKS~~i~~LL--------~~ir~RGdrAIIyD~~GeFv~~FY~p~~-DiILNPfD 242 (732)
T PRK13700 188 FCLHGTVGAGKSEVIRRLA--------NYARQRGDMVVIYDRSGEFVKSYYDPSI-DKILNPLD 242 (732)
T ss_pred eEEeCCCCCCHHHHHHHHH--------HHHHHcCCeEEEEeCCCchHHHhcCCcc-ceeeCCCC
Confidence 6788999999999775543 34433444432 234456654 55543 44 45543
No 439
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=20.02 E-value=2.5e+02 Score=31.13 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002128 395 EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTS 435 (962)
Q Consensus 395 ~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~ 435 (962)
.|.....+|+.+|.+|..+.+.++.+.+.||.+-..+...+
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n 127 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKN 127 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556777888888888888888888887777655554433
Done!