Query 002128
Match_columns 962
No_of_seqs 398 out of 2034
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 13:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b6u_A Kinesin-like protein KI 100.0 2.6E-85 9E-90 735.5 29.4 344 32-377 19-372 (372)
2 2y65_A Kinesin, kinesin heavy 100.0 5.3E-85 1.8E-89 732.2 27.6 340 32-385 9-361 (365)
3 1goj_A Kinesin, kinesin heavy 100.0 6.9E-84 2.4E-88 721.1 26.9 329 33-371 5-344 (355)
4 3bfn_A Kinesin-like protein KI 100.0 6.9E-84 2.4E-88 726.5 24.3 336 30-372 17-362 (388)
5 1t5c_A CENP-E protein, centrom 100.0 2.4E-83 8.3E-88 715.2 27.9 329 32-370 2-341 (349)
6 3cob_A Kinesin heavy chain-lik 100.0 1.1E-82 3.7E-87 714.1 32.4 337 33-389 4-349 (369)
7 2wbe_C Bipolar kinesin KRP-130 100.0 3.4E-83 1.2E-87 719.6 27.7 334 30-368 19-372 (373)
8 2vvg_A Kinesin-2; motor protei 100.0 5.2E-83 1.8E-87 712.5 28.2 332 33-369 3-347 (350)
9 1x88_A Kinesin-like protein KI 100.0 2.1E-83 7.3E-88 718.3 24.2 331 32-365 6-358 (359)
10 2zfi_A Kinesin-like protein KI 100.0 8.4E-83 2.9E-87 715.1 28.3 331 33-365 3-362 (366)
11 3lre_A Kinesin-like protein KI 100.0 2.5E-82 8.5E-87 708.8 28.4 323 33-357 9-355 (355)
12 2owm_A Nckin3-434, related to 100.0 2.1E-82 7.3E-87 726.4 28.4 335 30-366 34-422 (443)
13 4a14_A Kinesin, kinesin-like p 100.0 8.2E-82 2.8E-86 702.3 29.9 322 26-355 3-344 (344)
14 1bg2_A Kinesin; motor protein, 100.0 3.8E-82 1.3E-86 699.8 26.3 311 32-357 5-325 (325)
15 3nwn_A Kinesin-like protein KI 100.0 3E-80 1E-84 692.4 26.9 325 25-357 15-359 (359)
16 3gbj_A KIF13B protein; kinesin 100.0 3.3E-80 1.1E-84 691.4 26.7 321 35-356 2-349 (354)
17 2h58_A Kinesin-like protein KI 100.0 1.9E-79 6.4E-84 679.6 29.4 315 33-358 3-329 (330)
18 2heh_A KIF2C protein; kinesin, 100.0 1.2E-79 4.2E-84 691.8 26.9 317 32-360 49-385 (387)
19 3t0q_A AGR253WP; kinesin, alph 100.0 2.6E-79 8.7E-84 683.3 26.6 323 33-361 4-348 (349)
20 1ry6_A Internal kinesin; kines 100.0 2.2E-79 7.4E-84 685.6 26.1 322 35-366 1-340 (360)
21 1v8k_A Kinesin-like protein KI 100.0 3.4E-79 1.2E-83 692.1 26.0 319 32-362 69-407 (410)
22 2rep_A Kinesin-like protein KI 100.0 7.8E-79 2.7E-83 684.3 27.1 320 32-357 20-376 (376)
23 1f9v_A Kinesin-like protein KA 100.0 3.1E-79 1.1E-83 682.0 23.6 323 34-362 3-346 (347)
24 2nr8_A Kinesin-like protein KI 100.0 1.2E-78 4.1E-83 679.2 26.9 319 30-357 19-358 (358)
25 4etp_A Kinesin-like protein KA 100.0 1.7E-77 5.9E-82 679.7 27.2 323 34-362 59-402 (403)
26 3dc4_A Kinesin-like protein NO 100.0 2E-77 6.9E-82 666.1 25.9 307 27-361 15-339 (344)
27 3u06_A Protein claret segregat 100.0 6.9E-77 2.4E-81 675.5 28.7 324 33-367 58-393 (412)
28 4h1g_A Maltose binding protein 100.0 1.2E-72 4.2E-77 681.8 24.8 320 33-358 373-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 1.1E-29 3.8E-34 235.5 6.6 99 281-380 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 3.2E-28 1.1E-32 232.3 10.7 99 285-384 1-99 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 4.2E-23 1.4E-27 220.9 6.7 263 34-362 24-294 (298)
32 3ec2_A DNA replication protein 92.9 0.023 7.8E-07 56.0 0.6 52 80-132 5-56 (180)
33 2w58_A DNAI, primosome compone 91.3 0.071 2.4E-06 53.2 2.0 51 81-132 21-72 (202)
34 2qgz_A Helicase loader, putati 89.4 0.097 3.3E-06 57.0 1.2 53 81-134 120-172 (308)
35 3t15_A Ribulose bisphosphate c 84.1 0.47 1.6E-05 50.9 2.9 48 84-131 2-53 (293)
36 4etp_B Spindle POLE BODY-assoc 81.4 6.5 0.00022 43.2 10.3 119 34-175 59-183 (333)
37 1jbk_A CLPB protein; beta barr 81.1 0.64 2.2E-05 44.4 2.3 32 102-133 31-62 (195)
38 3nmd_A CGMP dependent protein 80.4 3.7 0.00013 35.8 6.5 45 373-423 21-65 (72)
39 2r62_A Cell division protease 79.9 0.63 2.1E-05 48.4 1.9 52 80-132 6-62 (268)
40 2bjv_A PSP operon transcriptio 79.8 0.57 2E-05 48.8 1.5 45 81-131 2-46 (265)
41 4b4t_K 26S protease regulatory 79.3 3.8 0.00013 46.9 8.2 69 81-149 168-264 (428)
42 4b4t_M 26S protease regulatory 78.6 1 3.5E-05 51.7 3.3 51 81-131 177-232 (434)
43 1g8p_A Magnesium-chelatase 38 78.3 0.71 2.4E-05 49.7 1.7 44 80-131 19-62 (350)
44 2p65_A Hypothetical protein PF 77.8 0.76 2.6E-05 44.0 1.6 31 102-132 31-61 (187)
45 3bos_A Putative DNA replicatio 77.7 1 3.4E-05 45.2 2.5 47 82-133 25-71 (242)
46 3h4m_A Proteasome-activating n 77.2 0.83 2.8E-05 47.9 1.8 53 80-132 12-69 (285)
47 1l8q_A Chromosomal replication 76.9 0.98 3.4E-05 48.6 2.3 51 80-133 6-56 (324)
48 1d2n_A N-ethylmaleimide-sensit 75.3 1.2 4.2E-05 46.5 2.5 22 111-132 61-82 (272)
49 1ixz_A ATP-dependent metallopr 75.2 1 3.5E-05 46.5 1.9 52 80-132 11-67 (254)
50 3cf0_A Transitional endoplasmi 75.1 0.92 3.1E-05 48.7 1.5 51 81-131 11-66 (301)
51 4b4t_J 26S protease regulatory 74.8 4.9 0.00017 45.7 7.4 69 82-150 145-241 (405)
52 3hnw_A Uncharacterized protein 74.5 11 0.00039 36.6 8.9 52 372-429 83-134 (138)
53 3te6_A Regulatory protein SIR3 73.3 0.94 3.2E-05 49.9 1.0 24 108-131 39-62 (318)
54 4b4t_I 26S protease regulatory 72.4 8 0.00027 44.4 8.4 70 81-150 178-275 (437)
55 4b4t_L 26S protease subunit RP 72.2 7.2 0.00025 44.7 8.0 69 81-149 177-273 (437)
56 2kjq_A DNAA-related protein; s 71.3 1.9 6.6E-05 41.6 2.6 44 80-133 12-55 (149)
57 1xwi_A SKD1 protein; VPS4B, AA 70.9 2.3 7.9E-05 46.2 3.4 50 82-131 9-62 (322)
58 1vec_A ATP-dependent RNA helic 70.1 2 6.8E-05 42.5 2.5 25 105-131 33-57 (206)
59 1qde_A EIF4A, translation init 70.0 1.7 5.9E-05 43.6 2.1 24 105-130 44-67 (224)
60 3nmd_A CGMP dependent protein 70.0 13 0.00045 32.4 7.2 47 380-432 21-67 (72)
61 3b9p_A CG5977-PA, isoform A; A 69.7 1.2 4.2E-05 46.9 0.9 51 81-131 17-71 (297)
62 2v1u_A Cell division control p 69.5 1.1 3.9E-05 48.3 0.6 21 112-132 42-62 (387)
63 2z4s_A Chromosomal replication 69.0 1.8 6.1E-05 49.3 2.1 51 79-133 99-149 (440)
64 3ghg_A Fibrinogen alpha chain; 68.7 2 6.8E-05 49.8 2.3 50 395-447 114-163 (562)
65 2gxq_A Heat resistant RNA depe 68.7 2 6.8E-05 42.4 2.1 24 106-131 32-55 (207)
66 3uk6_A RUVB-like 2; hexameric 68.1 2.1 7.3E-05 46.4 2.4 47 81-132 40-88 (368)
67 2chg_A Replication factor C sm 68.1 2 6.8E-05 42.0 2.0 22 111-132 35-56 (226)
68 3d8b_A Fidgetin-like protein 1 68.1 1.2 4E-05 49.2 0.3 52 81-132 80-135 (357)
69 3eie_A Vacuolar protein sortin 67.4 2.5 8.7E-05 45.6 2.8 51 81-131 14-68 (322)
70 1iy2_A ATP-dependent metallopr 67.0 0.97 3.3E-05 47.6 -0.6 52 80-132 35-91 (278)
71 3i00_A HIP-I, huntingtin-inter 66.7 10 0.00036 36.1 6.5 64 369-432 13-81 (120)
72 2qp9_X Vacuolar protein sortin 66.0 3.5 0.00012 45.4 3.6 51 81-131 47-101 (355)
73 3dkp_A Probable ATP-dependent 65.6 2.4 8.3E-05 43.3 2.1 26 104-131 58-83 (245)
74 1lv7_A FTSH; alpha/beta domain 65.2 1.3 4.6E-05 45.7 0.1 47 81-132 8-63 (257)
75 1fnn_A CDC6P, cell division co 64.9 3.4 0.00012 44.7 3.2 37 94-131 22-61 (389)
76 3vfd_A Spastin; ATPase, microt 64.6 3.3 0.00011 45.9 3.1 52 80-131 110-165 (389)
77 3bor_A Human initiation factor 64.2 1.6 5.6E-05 44.7 0.5 25 105-131 60-84 (237)
78 2pl3_A Probable ATP-dependent 63.0 2.9 0.0001 42.4 2.1 25 105-131 55-79 (236)
79 1sxj_C Activator 1 40 kDa subu 62.9 3 0.0001 45.1 2.4 42 83-132 23-64 (340)
80 3hnw_A Uncharacterized protein 62.7 14 0.00046 36.0 6.6 54 375-434 72-125 (138)
81 2qz4_A Paraplegin; AAA+, SPG7, 62.6 4.5 0.00015 41.4 3.5 20 113-132 38-57 (262)
82 4b4t_H 26S protease regulatory 62.6 3.6 0.00012 47.6 3.0 70 81-150 205-302 (467)
83 2c9o_A RUVB-like 1; hexameric 62.3 3.3 0.00011 47.1 2.6 47 81-132 33-81 (456)
84 3syl_A Protein CBBX; photosynt 61.8 3.9 0.00013 43.1 2.9 20 112-131 65-84 (309)
85 1p9r_A General secretion pathw 61.6 3.3 0.00011 47.1 2.4 28 104-131 157-184 (418)
86 1t6n_A Probable ATP-dependent 61.6 3.1 0.00011 41.7 2.0 25 105-131 44-68 (220)
87 3ly5_A ATP-dependent RNA helic 60.0 2.5 8.6E-05 44.2 1.0 25 105-131 84-108 (262)
88 3iuy_A Probable ATP-dependent 59.8 3.6 0.00012 41.5 2.1 25 105-131 50-74 (228)
89 3b6e_A Interferon-induced heli 59.7 1.8 6.2E-05 42.7 -0.1 22 108-131 44-65 (216)
90 1wrb_A DJVLGB; RNA helicase, D 59.3 3.6 0.00012 42.3 2.1 24 106-131 54-77 (253)
91 2qby_B CDC6 homolog 3, cell di 58.7 4 0.00014 44.2 2.4 46 81-131 16-62 (384)
92 3fmo_B ATP-dependent RNA helic 58.5 3.7 0.00013 44.1 2.0 27 105-131 122-148 (300)
93 3jvv_A Twitching mobility prot 58.3 3.6 0.00012 45.8 1.9 28 104-131 113-140 (356)
94 3eiq_A Eukaryotic initiation f 57.8 4.4 0.00015 44.2 2.5 26 104-131 69-94 (414)
95 3fe2_A Probable ATP-dependent 57.0 3.8 0.00013 42.0 1.7 24 106-131 60-83 (242)
96 2oxc_A Probable ATP-dependent 56.6 4.3 0.00015 41.2 2.1 24 106-131 55-78 (230)
97 2qby_A CDC6 homolog 1, cell di 56.4 3 0.0001 44.8 0.9 20 112-131 43-62 (386)
98 3llm_A ATP-dependent RNA helic 56.2 4 0.00014 41.8 1.7 26 104-131 68-93 (235)
99 3ber_A Probable ATP-dependent 55.7 4.6 0.00016 41.9 2.1 25 105-131 73-97 (249)
100 3co5_A Putative two-component 55.5 5.1 0.00017 37.9 2.3 21 114-134 27-47 (143)
101 3pfi_A Holliday junction ATP-d 55.5 5.6 0.00019 42.7 2.8 45 83-132 27-73 (338)
102 3pvs_A Replication-associated 54.3 5.4 0.00018 45.7 2.5 39 92-131 29-67 (447)
103 1hqc_A RUVB; extended AAA-ATPa 54.0 6.8 0.00023 41.5 3.2 45 82-131 9-55 (324)
104 3hu3_A Transitional endoplasmi 53.1 4.8 0.00016 46.7 1.9 50 82-131 201-255 (489)
105 1sxj_D Activator 1 41 kDa subu 53.0 4.5 0.00015 43.3 1.5 28 105-132 49-76 (353)
106 3fmp_B ATP-dependent RNA helic 52.6 5.3 0.00018 45.1 2.2 28 104-131 121-148 (479)
107 1q0u_A Bstdead; DEAD protein, 52.5 3.3 0.00011 41.6 0.4 24 106-131 35-58 (219)
108 2eyu_A Twitching motility prot 51.9 5.4 0.00018 42.2 1.9 19 113-131 24-42 (261)
109 3fht_A ATP-dependent RNA helic 51.3 5.8 0.0002 43.1 2.1 27 105-131 55-81 (412)
110 2j0s_A ATP-dependent RNA helic 51.1 5.5 0.00019 43.6 1.9 25 105-131 67-91 (410)
111 2x8a_A Nuclear valosin-contain 51.0 3.2 0.00011 44.2 -0.0 51 81-131 6-61 (274)
112 2zan_A Vacuolar protein sortin 51.0 3.3 0.00011 47.2 0.1 52 81-132 130-185 (444)
113 1w5s_A Origin recognition comp 50.9 7.4 0.00025 42.5 2.9 26 107-132 40-70 (412)
114 3pey_A ATP-dependent RNA helic 50.7 5.7 0.00019 42.7 1.9 27 105-131 35-61 (395)
115 3pxg_A Negative regulator of g 50.5 6 0.00021 45.3 2.2 30 105-134 192-221 (468)
116 3h1t_A Type I site-specific re 50.5 5.3 0.00018 46.6 1.7 30 102-132 187-216 (590)
117 2jee_A YIIU; FTSZ, septum, coi 50.3 40 0.0014 30.0 6.8 24 400-423 22-45 (81)
118 1ofh_A ATP-dependent HSL prote 50.2 5.6 0.00019 41.6 1.7 19 114-132 50-68 (310)
119 1njg_A DNA polymerase III subu 49.3 5.9 0.0002 38.9 1.6 18 115-132 46-63 (250)
120 2oap_1 GSPE-2, type II secreti 48.7 6.4 0.00022 45.9 2.0 21 109-131 257-277 (511)
121 3n70_A Transport activator; si 48.1 5.1 0.00017 38.0 0.9 20 112-131 22-41 (145)
122 2fz4_A DNA repair protein RAD2 47.8 6.7 0.00023 40.5 1.8 22 108-131 104-125 (237)
123 1iqp_A RFCS; clamp loader, ext 47.7 6.8 0.00023 41.2 1.9 22 111-132 43-64 (327)
124 2z0m_A 337AA long hypothetical 47.5 6.9 0.00024 41.1 1.9 24 106-131 25-48 (337)
125 4fcw_A Chaperone protein CLPB; 47.4 5.5 0.00019 41.9 1.1 17 115-131 48-64 (311)
126 1s2m_A Putative ATP-dependent 47.1 6.7 0.00023 42.6 1.8 25 105-131 51-75 (400)
127 1deq_A Fibrinogen (alpha chain 46.7 33 0.0011 38.4 7.1 50 399-448 114-163 (390)
128 1u0j_A DNA replication protein 46.0 8.7 0.0003 41.3 2.4 31 102-132 89-122 (267)
129 2i4i_A ATP-dependent RNA helic 45.5 7.7 0.00026 42.3 2.0 24 106-131 46-69 (417)
130 1gvn_B Zeta; postsegregational 45.4 14 0.00049 39.4 4.0 31 101-131 15-50 (287)
131 1tue_A Replication protein E1; 45.1 6 0.0002 41.2 0.9 28 106-133 48-77 (212)
132 2yy0_A C-MYC-binding protein; 44.6 28 0.00096 28.5 4.7 31 399-429 20-50 (53)
133 2lw1_A ABC transporter ATP-bin 44.4 78 0.0027 28.1 8.1 55 371-425 29-83 (89)
134 2ewv_A Twitching motility prot 44.3 6.8 0.00023 43.6 1.3 27 105-131 127-153 (372)
135 3u61_B DNA polymerase accessor 44.0 11 0.00038 40.1 2.8 19 114-132 48-66 (324)
136 1kd8_B GABH BLL, GCN4 acid bas 43.2 39 0.0014 25.5 4.7 32 400-431 3-34 (36)
137 2chq_A Replication factor C sm 42.3 6.5 0.00022 41.2 0.7 22 111-132 35-56 (319)
138 3fho_A ATP-dependent RNA helic 41.9 9.2 0.00031 44.0 1.9 26 106-131 150-175 (508)
139 2r44_A Uncharacterized protein 41.7 6.5 0.00022 42.2 0.6 24 107-132 41-64 (331)
140 3oiy_A Reverse gyrase helicase 41.6 8.7 0.0003 42.3 1.6 24 105-130 29-52 (414)
141 3i5x_A ATP-dependent RNA helic 41.5 11 0.00039 43.3 2.6 28 104-131 101-128 (563)
142 4emc_A Monopolin complex subun 41.3 81 0.0028 32.2 8.4 49 368-422 17-65 (190)
143 1xti_A Probable ATP-dependent 41.1 9.9 0.00034 41.0 1.9 25 105-131 38-62 (391)
144 4b3f_X DNA-binding protein smu 40.6 8.3 0.00028 45.9 1.3 27 105-132 197-223 (646)
145 1jr3_A DNA polymerase III subu 40.5 15 0.0005 39.5 3.2 18 114-131 38-55 (373)
146 1rif_A DAR protein, DNA helica 40.3 7.3 0.00025 40.9 0.7 22 108-131 124-145 (282)
147 1qvr_A CLPB protein; coiled co 40.0 6.5 0.00022 48.4 0.3 33 103-135 180-212 (854)
148 3a7p_A Autophagy protein 16; c 39.9 1.2E+02 0.004 30.0 9.0 60 372-431 69-129 (152)
149 1sxj_E Activator 1 40 kDa subu 39.8 7.4 0.00025 41.8 0.7 16 117-132 39-54 (354)
150 1e9r_A Conjugal transfer prote 39.6 5.3 0.00018 44.8 -0.5 25 114-138 53-77 (437)
151 2v66_B Nuclear distribution pr 39.4 74 0.0025 29.9 7.2 34 399-432 57-90 (111)
152 2d7d_A Uvrabc system protein B 39.3 26 0.00088 42.0 5.3 80 81-165 4-97 (661)
153 2db3_A ATP-dependent RNA helic 39.1 11 0.00039 42.2 2.1 25 105-131 86-110 (434)
154 3cf2_A TER ATPase, transitiona 39.0 23 0.00078 43.7 4.8 69 81-149 200-296 (806)
155 1sxj_B Activator 1 37 kDa subu 38.9 11 0.00039 39.4 1.9 22 111-132 39-60 (323)
156 2v1x_A ATP-dependent DNA helic 38.9 14 0.00049 43.6 3.0 26 104-131 51-76 (591)
157 3mq7_A Bone marrow stromal ant 38.6 1.4E+02 0.0048 28.2 8.9 37 397-433 70-106 (121)
158 2ce7_A Cell division protein F 38.3 7.3 0.00025 45.1 0.4 47 81-132 12-67 (476)
159 4a2p_A RIG-I, retinoic acid in 38.1 12 0.00041 42.4 2.1 25 105-131 15-39 (556)
160 3oja_B Anopheles plasmodium-re 37.8 44 0.0015 38.8 6.9 19 370-388 476-494 (597)
161 1in4_A RUVB, holliday junction 37.3 14 0.00048 40.0 2.4 17 115-131 52-68 (334)
162 1fuu_A Yeast initiation factor 36.8 7.3 0.00025 42.0 0.0 25 105-131 51-75 (394)
163 1n0w_A DNA repair protein RAD5 36.4 13 0.00043 37.5 1.7 29 103-131 10-41 (243)
164 3sjb_C Golgi to ER traffic pro 36.4 1.4E+02 0.005 27.1 8.4 23 370-392 22-44 (93)
165 1hv8_A Putative ATP-dependent 36.2 11 0.00039 39.8 1.5 25 106-131 37-61 (367)
166 1w36_D RECD, exodeoxyribonucle 36.1 10 0.00035 45.0 1.1 21 114-134 164-184 (608)
167 3tbk_A RIG-I helicase domain; 36.0 14 0.00047 41.8 2.1 24 106-131 13-36 (555)
168 2p5t_B PEZT; postsegregational 36.0 20 0.0007 37.1 3.3 30 102-131 15-49 (253)
169 2dhr_A FTSH; AAA+ protein, hex 35.4 6.4 0.00022 45.9 -0.8 46 81-131 27-81 (499)
170 2dgc_A Protein (GCN4); basic d 35.2 47 0.0016 28.0 4.7 35 395-429 27-61 (63)
171 2jlq_A Serine protease subunit 34.5 8.8 0.0003 43.5 0.2 24 106-130 12-35 (451)
172 1ojl_A Transcriptional regulat 34.1 12 0.00041 40.2 1.2 20 112-131 23-42 (304)
173 3sqw_A ATP-dependent RNA helic 33.9 17 0.0006 42.2 2.6 27 105-131 51-77 (579)
174 3c8u_A Fructokinase; YP_612366 33.8 20 0.00067 35.9 2.6 29 103-131 9-39 (208)
175 3b85_A Phosphate starvation-in 33.7 17 0.00058 37.1 2.2 25 105-131 15-39 (208)
176 2fwr_A DNA repair protein RAD2 33.5 15 0.00051 41.3 1.9 23 107-131 103-125 (472)
177 2wq1_A General control protein 33.3 54 0.0018 24.4 4.0 30 400-429 2-31 (33)
178 4gl2_A Interferon-induced heli 33.0 15 0.00052 43.4 2.0 25 105-131 15-39 (699)
179 1c4o_A DNA nucleotide excision 32.7 23 0.00078 42.5 3.4 79 82-174 2-94 (664)
180 4gp7_A Metallophosphoesterase; 32.5 11 0.00038 36.6 0.6 18 115-132 10-27 (171)
181 1um8_A ATP-dependent CLP prote 32.5 10 0.00035 41.5 0.3 18 114-131 72-89 (376)
182 2w0m_A SSO2452; RECA, SSPF, un 32.4 15 0.00051 36.4 1.5 29 104-132 10-41 (235)
183 3c3g_A Alpha/beta peptide with 32.4 67 0.0023 23.9 4.4 30 400-429 2-31 (33)
184 2cvh_A DNA repair and recombin 32.3 16 0.00056 36.0 1.7 29 104-132 7-38 (220)
185 1rz3_A Hypothetical protein rb 31.9 21 0.00072 35.5 2.5 29 103-131 8-39 (201)
186 1gd2_E Transcription factor PA 31.8 45 0.0015 28.8 4.1 37 396-432 27-63 (70)
187 1lwu_C Fibrinogen gamma chain; 31.6 88 0.003 34.5 7.5 47 373-425 7-53 (323)
188 3upu_A ATP-dependent DNA helic 31.6 19 0.00066 40.8 2.4 37 90-131 26-62 (459)
189 1wp9_A ATP-dependent RNA helic 31.4 16 0.00056 39.8 1.7 23 106-131 18-40 (494)
190 3c3f_A Alpha/beta peptide with 31.2 55 0.0019 24.4 3.8 30 400-429 3-32 (34)
191 2gza_A Type IV secretion syste 31.2 17 0.0006 40.0 1.9 22 108-131 171-192 (361)
192 3b9q_A Chloroplast SRP recepto 31.1 22 0.00077 38.3 2.7 17 115-131 101-117 (302)
193 1kd8_A GABH AIV, GCN4 acid bas 31.1 90 0.0031 23.6 5.0 32 400-431 3-34 (36)
194 3pxi_A Negative regulator of g 30.9 16 0.00055 44.2 1.7 30 105-134 192-221 (758)
195 4a74_A DNA repair and recombin 30.8 20 0.00069 35.5 2.1 28 104-131 12-42 (231)
196 3oja_B Anopheles plasmodium-re 30.8 79 0.0027 36.6 7.5 24 405-428 544-567 (597)
197 2b8t_A Thymidine kinase; deoxy 30.7 11 0.00038 39.1 0.2 23 115-137 13-35 (223)
198 4ayb_H DNA-directed RNA polyme 30.7 19 0.00066 32.2 1.7 44 872-934 21-64 (84)
199 2gk6_A Regulator of nonsense t 30.6 14 0.00047 43.9 1.0 19 115-133 196-214 (624)
200 1t2k_D Cyclic-AMP-dependent tr 30.5 1.1E+02 0.0038 25.2 6.3 37 396-432 20-56 (61)
201 3lw7_A Adenylate kinase relate 30.4 13 0.00046 34.7 0.7 16 116-131 3-18 (179)
202 3hws_A ATP-dependent CLP prote 30.0 13 0.00043 40.7 0.5 18 114-131 51-68 (363)
203 2hy6_A General control protein 29.8 66 0.0022 24.1 4.0 31 400-430 3-33 (34)
204 1r6b_X CLPA protein; AAA+, N-t 29.8 16 0.00054 44.1 1.3 31 105-135 198-228 (758)
205 3pxi_A Negative regulator of g 29.4 26 0.00088 42.4 3.1 16 116-131 523-538 (758)
206 2oxj_A Hybrid alpha/beta pepti 29.4 54 0.0018 24.5 3.5 30 400-429 3-32 (34)
207 2r2v_A GCN4 leucine zipper; co 29.3 1E+02 0.0036 23.0 5.0 31 400-430 3-33 (34)
208 2eqb_B RAB guanine nucleotide 29.2 2.3E+02 0.0077 26.0 8.5 53 374-432 8-60 (97)
209 2orw_A Thymidine kinase; TMTK, 29.1 11 0.00036 37.7 -0.3 20 116-135 5-24 (184)
210 2ykg_A Probable ATP-dependent 29.0 22 0.00075 42.0 2.4 24 106-131 22-45 (696)
211 3he5_A Synzip1; heterodimeric 29.0 31 0.0011 26.7 2.3 16 372-387 4-19 (49)
212 1sxj_A Activator 1 95 kDa subu 28.9 15 0.00053 42.4 1.0 19 114-132 77-95 (516)
213 1r6b_X CLPA protein; AAA+, N-t 28.9 28 0.00095 42.0 3.3 17 115-131 489-505 (758)
214 3tr0_A Guanylate kinase, GMP k 28.8 14 0.00048 36.2 0.6 16 116-131 9-24 (205)
215 2wt7_A Proto-oncogene protein 28.7 1.2E+02 0.0042 25.2 6.3 37 396-432 21-57 (63)
216 2qag_C Septin-7; cell cycle, c 28.7 14 0.00049 41.9 0.7 23 109-131 26-48 (418)
217 4etp_A Kinesin-like protein KA 28.7 1.1E+02 0.0036 34.7 7.8 54 373-432 5-58 (403)
218 1qvr_A CLPB protein; coiled co 28.7 28 0.00095 42.8 3.3 17 115-131 589-605 (854)
219 3tau_A Guanylate kinase, GMP k 28.6 16 0.00054 36.7 0.9 17 115-131 9-25 (208)
220 2bni_A General control protein 28.4 56 0.0019 24.5 3.5 30 400-429 3-32 (34)
221 4ag6_A VIRB4 ATPase, type IV s 28.4 13 0.00046 41.0 0.3 18 115-132 36-53 (392)
222 3s4r_A Vimentin; alpha-helix, 28.4 94 0.0032 28.1 5.9 33 398-430 56-88 (93)
223 1ci6_A Transcription factor AT 28.0 1.3E+02 0.0044 25.2 6.3 34 398-431 23-56 (63)
224 3e70_C DPA, signal recognition 27.9 30 0.001 37.9 3.0 18 114-131 129-146 (328)
225 1jnm_A Proto-oncogene C-JUN; B 27.9 99 0.0034 25.6 5.5 37 396-432 20-56 (62)
226 3cf2_A TER ATPase, transitiona 27.5 24 0.00084 43.4 2.4 50 115-173 512-584 (806)
227 2qnr_A Septin-2, protein NEDD5 27.5 15 0.00052 39.4 0.6 24 108-131 12-35 (301)
228 1nlw_A MAD protein, MAX dimeri 27.4 2.2E+02 0.0075 24.9 7.9 56 374-429 14-78 (80)
229 2dr3_A UPF0273 protein PH0284; 27.1 21 0.00071 35.8 1.5 26 106-131 12-40 (247)
230 1gm5_A RECG; helicase, replica 27.0 22 0.00075 43.6 1.9 27 105-131 380-406 (780)
231 3nbx_X ATPase RAVA; AAA+ ATPas 27.0 22 0.00076 41.3 1.9 27 105-133 34-60 (500)
232 1kgd_A CASK, peripheral plasma 26.9 16 0.00054 35.7 0.5 16 116-131 7-22 (180)
233 1ypw_A Transitional endoplasmi 26.9 16 0.00054 45.0 0.6 52 80-131 199-255 (806)
234 3a00_A Guanylate kinase, GMP k 26.6 15 0.00052 36.0 0.3 15 117-131 4-18 (186)
235 1zp6_A Hypothetical protein AT 26.3 18 0.00061 35.1 0.8 17 115-131 10-26 (191)
236 4a4z_A Antiviral helicase SKI2 26.2 27 0.00091 44.0 2.5 23 106-130 48-70 (997)
237 1xx6_A Thymidine kinase; NESG, 26.0 12 0.00041 37.9 -0.6 22 116-137 10-31 (191)
238 2og2_A Putative signal recogni 25.5 33 0.0011 38.2 2.8 17 115-131 158-174 (359)
239 3m48_A General control protein 25.4 67 0.0023 23.9 3.4 29 401-429 3-31 (33)
240 1ly1_A Polynucleotide kinase; 25.3 19 0.00067 34.2 0.8 17 115-131 3-19 (181)
241 3lfu_A DNA helicase II; SF1 he 25.2 20 0.00069 42.0 1.1 19 113-131 21-39 (647)
242 4gkw_A Spindle assembly abnorm 25.2 3.9E+02 0.013 25.7 9.6 29 405-433 46-74 (167)
243 1lvg_A Guanylate kinase, GMP k 25.0 17 0.00057 36.3 0.3 16 116-131 6-21 (198)
244 3trf_A Shikimate kinase, SK; a 24.8 20 0.00069 34.6 0.8 16 116-131 7-22 (185)
245 1ye8_A Protein THEP1, hypothet 24.4 18 0.0006 35.9 0.3 15 117-131 3-17 (178)
246 3a7p_A Autophagy protein 16; c 24.3 3.1E+02 0.011 27.1 9.0 50 376-431 66-115 (152)
247 2r8r_A Sensor protein; KDPD, P 24.3 18 0.0006 38.0 0.3 20 114-133 6-25 (228)
248 2v4h_A NF-kappa-B essential mo 24.3 2.5E+02 0.0086 26.3 7.9 63 372-437 46-108 (110)
249 4a2q_A RIG-I, retinoic acid in 24.2 28 0.00096 42.3 2.1 25 105-131 256-280 (797)
250 3sop_A Neuronal-specific septi 24.1 20 0.00067 38.1 0.7 19 113-131 1-19 (270)
251 1qhx_A CPT, protein (chloramph 24.0 21 0.00073 34.1 0.8 17 115-131 4-20 (178)
252 1yke_B RNA polymerase II holoe 24.0 3.8E+02 0.013 26.2 9.7 56 377-432 70-126 (151)
253 2yy0_A C-MYC-binding protein; 23.9 1.2E+02 0.0041 24.7 5.1 12 408-419 36-47 (53)
254 2wjy_A Regulator of nonsense t 23.8 21 0.00074 43.8 1.0 18 116-133 373-390 (800)
255 3lnc_A Guanylate kinase, GMP k 23.8 24 0.00083 35.7 1.2 16 116-131 29-44 (231)
256 2oca_A DAR protein, ATP-depend 23.8 22 0.00075 40.3 1.0 21 109-131 125-145 (510)
257 2j41_A Guanylate kinase; GMP, 23.7 20 0.00068 35.1 0.6 16 116-131 8-23 (207)
258 2ehv_A Hypothetical protein PH 23.7 20 0.00067 36.1 0.5 17 116-132 32-48 (251)
259 1rj9_A FTSY, signal recognitio 23.7 21 0.00072 38.6 0.8 17 115-131 103-119 (304)
260 1a93_B MAX protein, coiled coi 23.6 91 0.0031 23.4 3.9 25 399-423 8-32 (34)
261 2v6i_A RNA helicase; membrane, 23.6 28 0.00095 39.2 1.8 16 116-131 4-19 (431)
262 4a2w_A RIG-I, retinoic acid in 23.3 28 0.00097 43.3 2.0 24 106-131 257-280 (936)
263 2xzl_A ATP-dependent helicase 23.2 23 0.00079 43.5 1.1 18 116-133 377-394 (802)
264 3iij_A Coilin-interacting nucl 23.1 21 0.00073 34.4 0.6 16 116-131 13-28 (180)
265 1ykh_B RNA polymerase II holoe 22.9 4.5E+02 0.015 25.0 9.9 55 378-432 71-126 (132)
266 1oyw_A RECQ helicase, ATP-depe 22.9 18 0.00061 41.9 0.0 25 105-131 33-57 (523)
267 1lkx_A Myosin IE heavy chain; 22.8 36 0.0012 41.2 2.7 21 111-131 91-111 (697)
268 2bdt_A BH3686; alpha-beta prot 22.8 21 0.00072 34.7 0.5 16 116-131 4-19 (189)
269 2pt7_A CAG-ALFA; ATPase, prote 22.0 21 0.00071 39.0 0.3 21 109-131 168-188 (330)
270 2qen_A Walker-type ATPase; unk 21.8 30 0.001 36.4 1.5 17 115-131 32-48 (350)
271 3efg_A Protein SLYX homolog; x 21.7 1.9E+02 0.0065 25.3 6.4 36 399-434 22-57 (78)
272 2px0_A Flagellar biosynthesis 21.7 22 0.00076 38.2 0.5 17 116-132 107-123 (296)
273 1j8m_F SRP54, signal recogniti 21.7 60 0.0021 34.8 3.9 16 116-131 100-115 (297)
274 1znw_A Guanylate kinase, GMP k 21.6 23 0.00078 35.3 0.5 16 116-131 22-37 (207)
275 2z83_A Helicase/nucleoside tri 21.5 32 0.0011 39.0 1.8 16 116-131 23-38 (459)
276 1w9i_A Myosin II heavy chain; 21.4 40 0.0014 41.3 2.7 21 111-131 169-189 (770)
277 1am9_A Srebp-1A, protein (ster 21.3 4.1E+02 0.014 23.1 9.1 59 374-432 19-77 (82)
278 3uie_A Adenylyl-sulfate kinase 21.3 32 0.0011 33.9 1.5 19 113-131 24-42 (200)
279 1yks_A Genome polyprotein [con 21.2 31 0.001 39.0 1.5 20 110-131 6-25 (440)
280 3e1s_A Exodeoxyribonuclease V, 21.1 32 0.0011 40.5 1.7 19 115-133 205-223 (574)
281 2v71_A Nuclear distribution pr 21.1 1.5E+02 0.0051 30.3 6.3 59 374-432 20-83 (189)
282 2v26_A Myosin VI; calmodulin-b 21.1 41 0.0014 41.4 2.7 21 111-131 137-157 (784)
283 3oja_A Leucine-rich immune mol 21.0 2.6E+02 0.0088 31.6 9.2 33 399-431 443-475 (487)
284 1kht_A Adenylate kinase; phosp 21.0 25 0.00087 33.7 0.7 16 116-131 5-20 (192)
285 3sja_C Golgi to ER traffic pro 21.0 3.9E+02 0.013 22.8 8.2 51 371-429 6-56 (65)
286 3na7_A HP0958; flagellar bioge 20.9 2.7E+02 0.0092 29.1 8.7 25 402-426 108-132 (256)
287 3kta_A Chromosome segregation 20.7 24 0.00081 34.1 0.4 16 116-131 28-43 (182)
288 2ze6_A Isopentenyl transferase 20.6 25 0.00087 36.5 0.6 15 116-130 3-17 (253)
289 1gku_B Reverse gyrase, TOP-RG; 20.6 39 0.0013 42.7 2.4 22 106-129 65-86 (1054)
290 3m9b_A Proteasome-associated A 20.5 34 0.0012 36.4 1.6 60 373-432 26-95 (251)
291 3vaa_A Shikimate kinase, SK; s 20.5 28 0.00095 34.4 0.9 16 116-131 27-42 (199)
292 1kag_A SKI, shikimate kinase I 20.5 26 0.00091 33.2 0.7 16 116-131 6-21 (173)
293 3kl4_A SRP54, signal recogniti 20.5 59 0.002 37.1 3.7 18 115-132 98-115 (433)
294 1odf_A YGR205W, hypothetical 3 20.5 45 0.0015 35.8 2.5 20 112-131 29-48 (290)
295 1gmj_A ATPase inhibitor; coile 20.5 3.6E+02 0.012 24.1 7.8 27 399-425 52-78 (84)
296 1g8x_A Myosin II heavy chain f 20.3 42 0.0014 42.4 2.6 21 111-131 169-189 (1010)
297 3na7_A HP0958; flagellar bioge 20.2 3.3E+02 0.011 28.4 9.2 11 489-499 98-108 (256)
298 1nkp_B MAX protein, MYC proto- 20.2 1.3E+02 0.0044 26.2 5.0 30 400-429 49-78 (83)
299 3tif_A Uncharacterized ABC tra 20.2 27 0.00092 36.1 0.7 16 116-131 33-48 (235)
No 1
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=2.6e-85 Score=735.47 Aligned_cols=344 Identities=38% Similarity=0.586 Sum_probs=290.2
Q ss_pred CCCCeEEEEecCCCChhhhhcCCceEEEecC-CcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHh
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQVAWDCVD-DHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSAL 110 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~-~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl 110 (962)
..++|+|+|||||+++.|...+...++.+.. +.++.+..+........+.|.||+||+++++|++||+.++.|+|++++
T Consensus 19 ~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 98 (372)
T 3b6u_A 19 SSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVL 98 (372)
T ss_dssp --CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHh
Confidence 4578999999999999998877766665543 456666554433234468999999999999999999999999999999
Q ss_pred cCCceeEEEeccCCCCCccccc---------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCCCCCcce
Q 002128 111 MGINATIFAYGQTSSGKTYTMR---------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSESGRNLK 181 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~---------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~ 181 (962)
+|||+||||||||||||||||. ||+|+++.+||..+.......|.|+|||+|||||+|||||++.....+.
T Consensus 99 ~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~ 178 (372)
T 3b6u_A 99 QGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLE 178 (372)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCCBC
T ss_pred CCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCCce
Confidence 9999999999999999999994 6899999999999998888899999999999999999999987767899
Q ss_pred eeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEe
Q 002128 182 LLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVD 261 (962)
Q Consensus 182 i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVD 261 (962)
+++++.+|++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|++......+......|+|+|||
T Consensus 179 i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lVD 258 (372)
T 3b6u_A 179 LKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVD 258 (372)
T ss_dssp EEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEEE
T ss_pred EEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998865433333445689999999
Q ss_pred cCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcch
Q 002128 262 LAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHF 341 (962)
Q Consensus 262 LAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~ 341 (962)
||||||..++++.|.|++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+|||||+|+|||||||+..++
T Consensus 259 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~ 337 (372)
T 3b6u_A 259 LAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG-KSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNV 337 (372)
T ss_dssp CCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC----CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGH
T ss_pred CCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcC-CCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCH
Confidence 9999999999999999999999999999999999999976 456999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccccCHHHHHHHHH
Q 002128 342 EQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQ 377 (962)
Q Consensus 342 eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~Lq 377 (962)
+||++||+||+|||+|+|+|.+|+.+.+ +++++||
T Consensus 338 ~ETlsTLrfA~rak~I~n~~~~n~~~~~-~~~~~~~ 372 (372)
T 3b6u_A 338 EETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREFQ 372 (372)
T ss_dssp HHHHHHHHHHHHHTTCBCCCCCCC------------
T ss_pred HHHHHHHHHHHHHhhccccceecCChHH-HHHHhcC
Confidence 9999999999999999999999998654 5555553
No 2
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=5.3e-85 Score=732.16 Aligned_cols=340 Identities=40% Similarity=0.567 Sum_probs=287.8
Q ss_pred CCCCeEEEEecCCCChhhhhcCCceEEEecC---CcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHH
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQVAWDCVD---DHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALS 108 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~---~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~s 108 (962)
..++|+|+|||||+++.|...+...++.+.+ +.++... .+.|.||+||+++++|++||+.++.|+|++
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~---------~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 79 (365)
T 2y65_A 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA---------GKVYLFDKVFKPNASQEKVYNEAAKSIVTD 79 (365)
T ss_dssp CEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC---------CEEEeCceEecCCCCHHHHHHHhhhhHHHH
Confidence 4678999999999999998877766665554 3444432 368999999999999999999999999999
Q ss_pred HhcCCceeEEEeccCCCCCccccc---------CCchHHHHHHHHHHhcC-CCCceEEEeeeEEEecccccccccCCCCC
Q 002128 109 ALMGINATIFAYGQTSSGKTYTMR---------GITEKAVVDIYNHIMNT-PERDFTIKISGLEIYNENVRDLLNSESGR 178 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM~---------Gii~ral~dLF~~i~~~-~~~~f~V~vS~lEIYnE~V~DLL~~~~~~ 178 (962)
+++|||+||||||||||||||||. ||+|+++.+||+.+... ....|.|+|||+|||||+|+|||++...
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~- 158 (365)
T 2y65_A 80 VLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKV- 158 (365)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCC-
T ss_pred HhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcC-
Confidence 999999999999999999999994 78999999999999764 4568999999999999999999987654
Q ss_pred cceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEE
Q 002128 179 NLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLN 258 (962)
Q Consensus 179 ~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~ 258 (962)
.+.+++|+.++++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|.+..... .....|+|+
T Consensus 159 ~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL~ 235 (365)
T 2y65_A 159 NLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN---QKKLSGKLY 235 (365)
T ss_dssp SBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT---CCEEEEEEE
T ss_pred CceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC---CCEeEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999998765432 235679999
Q ss_pred EEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCC
Q 002128 259 FVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPAL 338 (962)
Q Consensus 259 fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~ 338 (962)
|||||||||..++++.|.+++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+|||||+|+|||||||+.
T Consensus 236 lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~ 314 (365)
T 2y65_A 236 LVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADG-NKTHIPYRDSKLTRILQESLGGNARTTIVICCSPAS 314 (365)
T ss_dssp EEECCCCCC----------------CCHHHHHHHHHHHHHHHC-CCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBG
T ss_pred EEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCccccCHHHHHHHhhcCCCccEEEEEEecCcc
Confidence 9999999999999999999999999999999999999999976 347999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHH
Q 002128 339 SHFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEA 385 (962)
Q Consensus 339 ~~~eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~ 385 (962)
.+++||++||+||+|||.|+|.|.+|+.++.++++++|++|+++|+.
T Consensus 315 ~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~~ 361 (365)
T 2y65_A 315 FNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNAR 361 (365)
T ss_dssp GGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC----------
T ss_pred CCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999989888877653
No 3
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=6.9e-84 Score=721.07 Aligned_cols=329 Identities=37% Similarity=0.552 Sum_probs=302.8
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcC
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMG 112 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G 112 (962)
.++|+|+|||||+++.|...+...++.+.++.++.+... .....|.||+||+++++|++||+.++.|+|+++++|
T Consensus 5 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 79 (355)
T 1goj_A 5 ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSK-----EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNG 79 (355)
T ss_dssp SCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECST-----TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTT
T ss_pred CCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccC-----CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCC
Confidence 468999999999999998888777788877777765432 235789999999999999999999999999999999
Q ss_pred CceeEEEeccCCCCCccccc----------CCchHHHHHHHHHHhcCC-CCceEEEeeeEEEecccccccccCCCCCcce
Q 002128 113 INATIFAYGQTSSGKTYTMR----------GITEKAVVDIYNHIMNTP-ERDFTIKISGLEIYNENVRDLLNSESGRNLK 181 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~----------Gii~ral~dLF~~i~~~~-~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~ 181 (962)
||+||||||||||||||||+ ||+|+++.+||+.+.... ...|.|+|||+|||||+|||||++... .+.
T Consensus 80 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~-~l~ 158 (355)
T 1goj_A 80 YNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQND-NLP 158 (355)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCC-SCC
T ss_pred CcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccC-Cce
Confidence 99999999999999999995 589999999999997654 568999999999999999999998765 899
Q ss_pred eeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEe
Q 002128 182 LLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVD 261 (962)
Q Consensus 182 i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVD 261 (962)
+++++.+|++|.|++++.|.++++++.+|..|..+|++++|.+|..|||||+||+|+|.+..... .....|+|+|||
T Consensus 159 i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL~lVD 235 (355)
T 1goj_A 159 VHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET---GSAKSGQLFLVD 235 (355)
T ss_dssp EEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT---TEEEEEEEEEEE
T ss_pred eEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC---CceeeeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998764432 245679999999
Q ss_pred cCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcch
Q 002128 262 LAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHF 341 (962)
Q Consensus 262 LAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~ 341 (962)
||||||..++++.|.+++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+|||||+|+|||||||+..++
T Consensus 236 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~-~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~ 314 (355)
T 1goj_A 236 LAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDG-KSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYND 314 (355)
T ss_dssp CCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHC-SCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGH
T ss_pred CCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcC-CCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccH
Confidence 9999999999999999999999999999999999999976 457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccccccCHHH
Q 002128 342 EQSRNTLFFATRAKEVTNNAQVNMVVSDKQ 371 (962)
Q Consensus 342 eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~ 371 (962)
+||++||+||+|||.|+|+|.+|..++...
T Consensus 315 ~ETl~TL~fA~rak~I~n~~~vn~~~~~~~ 344 (355)
T 1goj_A 315 AETLSTLRFGMRAKSIKNKAKVNAELSPAE 344 (355)
T ss_dssp HHHHHHHHHHHHHHTCBCCCCCCSSSSCSS
T ss_pred HHHHHHHHHHHHHhhccCCceeCCCCCHHH
Confidence 999999999999999999999999877643
No 4
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.9e-84 Score=726.55 Aligned_cols=336 Identities=32% Similarity=0.474 Sum_probs=248.7
Q ss_pred CCCCCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHH
Q 002128 30 KPREEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSA 109 (962)
Q Consensus 30 ~~~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~sv 109 (962)
....++|+|+|||||+++.|...+...++...++.++.+..... ......|.||+||+++++|++||+.++.|+|+++
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~--~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~ 94 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN--HQETLKYQFDAFYGERSTQQDIYAGSVQPILRHL 94 (388)
T ss_dssp SSCCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHH
T ss_pred cCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCC--CCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHh
Confidence 34567899999999999999766555455555555554433211 1235689999999999999999999999999999
Q ss_pred hcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhc----CCCCceEEEeeeEEEecccccccccCCCCCc
Q 002128 110 LMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMN----TPERDFTIKISGLEIYNENVRDLLNSESGRN 179 (962)
Q Consensus 110 l~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~----~~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~ 179 (962)
++|||+||||||||||||||||+ ||+|+++.+||+.+.. .....|.|+|||+|||||+|||||++... .
T Consensus 95 l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~-~ 173 (388)
T 3bfn_A 95 LEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASG-D 173 (388)
T ss_dssp TTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSC-B
T ss_pred hcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCC-C
Confidence 99999999999999999999995 7999999999999975 23457999999999999999999998765 8
Q ss_pred ceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEE
Q 002128 180 LKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNF 259 (962)
Q Consensus 180 L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~f 259 (962)
+.+++|+.++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+...... .....|+|+|
T Consensus 174 l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~--~~~~~skL~l 251 (388)
T 3bfn_A 174 LVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP--FRQREGKLYL 251 (388)
T ss_dssp CCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTT--CCEEEEEEEE
T ss_pred ceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCC--CceeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987644322 2346799999
Q ss_pred EecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCc
Q 002128 260 VDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALS 339 (962)
Q Consensus 260 VDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~ 339 (962)
||||||||..++++.|.|++|+.+||+||++||+||.+|+.++ .||||||||||+||||+|||||+|+|||||||+..
T Consensus 252 VDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~--~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~ 329 (388)
T 3bfn_A 252 IDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL--PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERR 329 (388)
T ss_dssp EECCCTTC--------------CCCCHHHHHHHHHHHHHHTTC--SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGG
T ss_pred EECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC--CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccc
Confidence 9999999999999999999999999999999999999999753 59999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhccccccccccccCHHHH
Q 002128 340 HFEQSRNTLFFATRAKEVTNNAQVNMVVSDKQL 372 (962)
Q Consensus 340 ~~eETlsTLrFAsRAk~Ikn~~~vN~~~~~~~l 372 (962)
+++||++||+||+|||+|+|+|.+|+.++..++
T Consensus 330 ~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l 362 (388)
T 3bfn_A 330 FYLDTVSALNFAARSKEVINRPFTNESLQPHAL 362 (388)
T ss_dssp GHHHHHHHHHHHCSEEEEC--------------
T ss_pred cHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHH
Confidence 999999999999999999999999999887655
No 5
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-83 Score=715.22 Aligned_cols=329 Identities=45% Similarity=0.676 Sum_probs=286.1
Q ss_pred CCCCeEEEEecCCCChhhhhcCCce--EEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHH
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQV--AWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSA 109 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~~--~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~sv 109 (962)
.+++|+|+|||||++++|...+... .|.. ++.++.... ..+.|.||+||+++++|++||+.++.|+|+++
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~-~~~~i~~~~-------~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~ 73 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKT-DNNVIYQVD-------GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSA 73 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEE-ETTEEEETT-------SSCEEECSCEECTTSCHHHHHHHTTHHHHHHH
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeC-CCCeEEECC-------CCeEEECCEEECCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999997655533 2332 334443321 24689999999999999999999999999999
Q ss_pred hcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccccCCC-CCccee
Q 002128 110 LMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLNSES-GRNLKL 182 (962)
Q Consensus 110 l~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~~~~-~~~L~i 182 (962)
++|||+||||||||||||||||. ||+|+++.+||+.+...++..|.|+|||+|||||+|||||++.. ..++.+
T Consensus 74 l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 153 (349)
T 1t5c_A 74 IQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLII 153 (349)
T ss_dssp HTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEE
T ss_pred HcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceE
Confidence 99999999999999999999995 69999999999999998889999999999999999999998764 357999
Q ss_pred eeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCC--cceeEEEEEEEE
Q 002128 183 LDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSD--CVRSFVASLNFV 260 (962)
Q Consensus 183 ~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~--~~~~~~skL~fV 260 (962)
++|+.++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++....... ......|+|+||
T Consensus 154 ~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lV 233 (349)
T 1t5c_A 154 REDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLV 233 (349)
T ss_dssp EETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEE
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999876543321 123467999999
Q ss_pred ecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcc
Q 002128 261 DLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSH 340 (962)
Q Consensus 261 DLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~ 340 (962)
|||||||..++++.|.|++|+.+||+||++||+||.+|+.+++..||||||||||+||||+|||||+|+|||||||+ +
T Consensus 234 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~ 311 (349)
T 1t5c_A 234 DLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--S 311 (349)
T ss_dssp ECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--C
T ss_pred ECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--C
Confidence 99999999999999999999999999999999999999987666799999999999999999999999999999997 5
Q ss_pred hHHHHHHHHHHHHhhccccccccccccCHH
Q 002128 341 FEQSRNTLFFATRAKEVTNNAQVNMVVSDK 370 (962)
Q Consensus 341 ~eETlsTLrFAsRAk~Ikn~~~vN~~~~~~ 370 (962)
++||++||+||+|||.|+|+|.+|+.....
T Consensus 312 ~~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 312 FDETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp SHHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred HHHHHHHHHHHHHHhhcccCceeccCCCCC
Confidence 999999999999999999999999987643
No 6
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.1e-82 Score=714.05 Aligned_cols=337 Identities=36% Similarity=0.534 Sum_probs=301.9
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhcC
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALMG 112 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G 112 (962)
.++|+|+|||||+++.|...+....+...+..++..... ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~----~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G 78 (369)
T 3cob_A 4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK----DDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDG 78 (369)
T ss_dssp CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECT----TSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTT
T ss_pred CCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCC----CCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcC
Confidence 368999999999999998777766665555555543221 1234789999999999999999999 79999999999
Q ss_pred CceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCCC-CceEEEeeeEEEecccccccccCCC--CCcceee
Q 002128 113 INATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTPE-RDFTIKISGLEIYNENVRDLLNSES--GRNLKLL 183 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~~-~~f~V~vS~lEIYnE~V~DLL~~~~--~~~L~i~ 183 (962)
||+||||||||||||||||+ ||+|+++.+||+.+..... ..|.|++||+|||||+|+|||++.. ...+.++
T Consensus 79 ~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~ 158 (369)
T 3cob_A 79 YNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIK 158 (369)
T ss_dssp CEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEE
T ss_pred CceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEE
Confidence 99999999999999999994 7999999999999987655 5899999999999999999998754 3479999
Q ss_pred eCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecC
Q 002128 184 DDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLA 263 (962)
Q Consensus 184 ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLA 263 (962)
+|+.++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++..... .....|+|+|||||
T Consensus 159 e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL~lVDLA 235 (369)
T 3cob_A 159 KDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT---QAIARGKLSFVDLA 235 (369)
T ss_dssp ECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT---CCEEEEEEEEEECC
T ss_pred ECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC---CcEEEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999998765432 23567999999999
Q ss_pred CCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHH
Q 002128 264 GSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQ 343 (962)
Q Consensus 264 GSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eE 343 (962)
||||..++++.|.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||+..+++|
T Consensus 236 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~--~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~E 313 (369)
T 3cob_A 236 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG--NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDE 313 (369)
T ss_dssp CSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTT--CSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHH
T ss_pred CCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHH
Confidence 99999999999999999999999999999999999975 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHhcC
Q 002128 344 SRNTLFFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRT 389 (962)
Q Consensus 344 TlsTLrFAsRAk~Ikn~~~vN~~~~~~~li~~LqkEi~~Le~eL~~ 389 (962)
|++||+||+|||.|+|.|.+|... +||.+|+.+|..
T Consensus 314 Tl~TLrfA~rak~i~~~~~~n~~~----------~ei~~L~~~l~~ 349 (369)
T 3cob_A 314 THNSLTYASRVRSIVNDPSKNVSS----------KEVARLKKLVSY 349 (369)
T ss_dssp HHHHHHHHHHHHTCBCCCCCCEEC----------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcccCCcccCCH----------HHHHHHHHHHHH
Confidence 999999999999999999999886 455556655543
No 7
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=3.4e-83 Score=719.62 Aligned_cols=334 Identities=36% Similarity=0.559 Sum_probs=284.3
Q ss_pred CCCCCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHH
Q 002128 30 KPREEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSA 109 (962)
Q Consensus 30 ~~~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~sv 109 (962)
....++|+|+|||||++.+|...+...++.+.+..+++..+... ....+.|.||+||+++++|++||+.++.|+|+++
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~ 96 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD--SKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEV 96 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSS--STTCEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCC--CCCceEEeccEEeccccchhHHHHHHHHHHHHHH
Confidence 34567899999999999999887777778888888877765432 2236799999999999999999999999999999
Q ss_pred hcCCceeEEEeccCCCCCccccc-----------------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccc
Q 002128 110 LMGINATIFAYGQTSSGKTYTMR-----------------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLL 172 (962)
Q Consensus 110 l~G~N~tIfAYGqTGSGKTyTM~-----------------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL 172 (962)
++|||+||||||||||||||||. ||+|+++.+||+.+... +..|.|+|||+|||||+|||||
T Consensus 97 l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DLL 175 (373)
T 2wbe_C 97 LNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDLL 175 (373)
T ss_dssp HHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEESS
T ss_pred hCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEECC
Confidence 99999999999999999999995 68999999999999764 4689999999999999999999
Q ss_pred cCCCCCcceeeeCC--CCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcc
Q 002128 173 NSESGRNLKLLDDP--EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCV 250 (962)
Q Consensus 173 ~~~~~~~L~i~ed~--~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~ 250 (962)
++.....+++++++ .++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|+.......+..
T Consensus 176 ~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 255 (373)
T 2wbe_C 176 STDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGED 255 (373)
T ss_dssp CTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCC
T ss_pred CCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCc
Confidence 98776688888885 5679999999999999999999999999999999999999999999999999987644333333
Q ss_pred eeEEEEEEEEecCCCccccccccc-hhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccc
Q 002128 251 RSFVASLNFVDLAGSERASQTHAD-GARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTA 329 (962)
Q Consensus 251 ~~~~skL~fVDLAGSER~~kt~~~-G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~ 329 (962)
....|+|+|||||||||..++++. |.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+
T Consensus 256 ~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~--~~hvPyRdSkLT~lLqdsLgGnskt~ 333 (373)
T 2wbe_C 256 MLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDR--APHVPYRESKLTRLLQESLGGRTKTS 333 (373)
T ss_dssp EEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHC--SSCCCGGGCHHHHHTHHHHHSSSEEE
T ss_pred ceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcC--CCcCccccchHHHHHHHHhCCCceEE
Confidence 456899999999999999999987 999999999999999999999999874 56999999999999999999999999
Q ss_pred eeeccCCCCcchHHHHHHHHHHHHhhccccccccccccC
Q 002128 330 IICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMVVS 368 (962)
Q Consensus 330 mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN~~~~ 368 (962)
|||||||+..+++||++||+||+|||+|+|+|.+|+..+
T Consensus 334 mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 334 IIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 999999999999999999999999999999999998764
No 8
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=5.2e-83 Score=712.51 Aligned_cols=332 Identities=39% Similarity=0.575 Sum_probs=269.7
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecC-CcEEEEcCCCCC-----CCCCCceeecceecCCCCchhHHHhhchHHHH
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVD-DHTIVYKPQPHE-----RVAQPSSFSFDKVFGPSCLTETVYEEGVKNVA 106 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~-~~tiv~~~~~~~-----~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV 106 (962)
.++|+|+|||||++++|...+...++.+.+ +.+|.+.++... .....+.|.||+||+++++|++||+.++.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 468999999999999998877766666543 356666554321 12335789999999999999999999999999
Q ss_pred HHHhcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhc-CCCCceEEEeeeEEEecccccccccCCCCCc
Q 002128 107 LSALMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMN-TPERDFTIKISGLEIYNENVRDLLNSESGRN 179 (962)
Q Consensus 107 ~svl~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~-~~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~ 179 (962)
+++++|||+||||||||||||||||. ||+|+++.+||+.+.. .....|.|++||+|||||+|||||++. ..
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~--~~ 160 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN--TK 160 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE--EE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCC--cC
Confidence 99999999999999999999999995 6999999999999984 456789999999999999999999843 47
Q ss_pred ceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEE
Q 002128 180 LKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNF 259 (962)
Q Consensus 180 L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~f 259 (962)
+.+++|+.+|++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++..... +......|+|+|
T Consensus 161 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~~skl~l 239 (350)
T 2vvg_A 161 LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIE-NKEVIRVGKLNL 239 (350)
T ss_dssp ECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC-----CEEEEEEEEE
T ss_pred ceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccC-CCccEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999998764432 222346799999
Q ss_pred EecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCc
Q 002128 260 VDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALS 339 (962)
Q Consensus 260 VDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~ 339 (962)
||||||||..++++.|.+++|+.+||+||++||+||.+|+.++ .||||||||||+||||+|||||+|+|||||||+..
T Consensus 240 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~--~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~ 317 (350)
T 2vvg_A 240 VDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA--THIPYRDSKLTRLLQDSLGGNSKTLMCANISPAST 317 (350)
T ss_dssp EECCCCCC---------------CTTHHHHHHHHHHHHHHHTC--SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGG
T ss_pred EeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC--CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccc
Confidence 9999999999999999999999999999999999999999864 69999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhccccccccccccCH
Q 002128 340 HFEQSRNTLFFATRAKEVTNNAQVNMVVSD 369 (962)
Q Consensus 340 ~~eETlsTLrFAsRAk~Ikn~~~vN~~~~~ 369 (962)
+++||++||+||+|||+|+|+|.+|+.+.+
T Consensus 318 ~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 318 NYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp GHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred cHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 999999999999999999999999988654
No 9
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=2.1e-83 Score=718.31 Aligned_cols=331 Identities=38% Similarity=0.574 Sum_probs=275.9
Q ss_pred CCCCeEEEEecCCCChhhhhcCCceEEEecCC-cEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHh
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQVAWDCVDD-HTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSAL 110 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~-~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl 110 (962)
..++|+|+|||||++..|...+...++.+.+. ..+.+..+........+.|.||+||+++++|++||+.++.|+|++++
T Consensus 6 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 85 (359)
T 1x88_A 6 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVI 85 (359)
T ss_dssp ---CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHh
Confidence 45789999999999999988777666666543 44444321111112347899999999999999999999999999999
Q ss_pred cCCceeEEEeccCCCCCccccc-----------------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEeccccccccc
Q 002128 111 MGINATIFAYGQTSSGKTYTMR-----------------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN 173 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~-----------------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~ 173 (962)
+|||+||||||||||||||||. ||+|+++.+||+.+.. ....|.|+|||+|||||+|+|||+
T Consensus 86 ~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL~ 164 (359)
T 1x88_A 86 MGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLLN 164 (359)
T ss_dssp TTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETTC
T ss_pred CCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehhc
Confidence 9999999999999999999994 7899999999999865 457899999999999999999998
Q ss_pred CCCC--CcceeeeCCC--CCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCc
Q 002128 174 SESG--RNLKLLDDPE--KGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDC 249 (962)
Q Consensus 174 ~~~~--~~L~i~ed~~--~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~ 249 (962)
+... ..+.+++++. +|++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|........+.
T Consensus 165 ~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~ 244 (359)
T 1x88_A 165 PSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 244 (359)
T ss_dssp TTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSC
T ss_pred ccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCC
Confidence 7653 4689999874 78999999999999999999999999999999999999999999999999998764433333
Q ss_pred ceeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccc
Q 002128 250 VRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTA 329 (962)
Q Consensus 250 ~~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~ 329 (962)
.....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+
T Consensus 245 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~--~~hvPyRdSkLT~lLqdsLgGnskt~ 322 (359)
T 1x88_A 245 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER--TPHVPYRESKLTRILQDSLGGRTRTS 322 (359)
T ss_dssp EEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTT--CSCCCGGGSHHHHHTGGGSSSSSEEE
T ss_pred ceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcC--CCCCccccchHHHHHHHHhCCCCeEE
Confidence 3456899999999999999999999999999999999999999999999874 56999999999999999999999999
Q ss_pred eeeccCCCCcchHHHHHHHHHHHHhhcccccccccc
Q 002128 330 IICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNM 365 (962)
Q Consensus 330 mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN~ 365 (962)
|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 323 mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 323 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 999999999999999999999999999999999996
No 10
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=8.4e-83 Score=715.14 Aligned_cols=331 Identities=37% Similarity=0.573 Sum_probs=281.1
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCC--------CchhHHHhhchHH
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPS--------CLTETVYEEGVKN 104 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~--------asQeeVy~~~v~p 104 (962)
..+|+|+|||||++++|...+..+++.+.++.+++..+... ....+.|.||+||++. ++|++||+.++.|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~--~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~p 80 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQP--KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE 80 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCT--TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCC--CCCceEEecceEeecCccccccccCcHHHHHHHHHHH
Confidence 35799999999999999887777777777766655443322 2346799999999987 8999999999999
Q ss_pred HHHHHhcCCceeEEEeccCCCCCccccc--------CCchHHHHHHHHHHhcCC--CCceEEEeeeEEEecccccccccC
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMR--------GITEKAVVDIYNHIMNTP--ERDFTIKISGLEIYNENVRDLLNS 174 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~--------Gii~ral~dLF~~i~~~~--~~~f~V~vS~lEIYnE~V~DLL~~ 174 (962)
+|+++++|||+||||||||||||||||+ ||+|+++.+||+.+.... ...|.|+|||+|||||+|||||++
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 160 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccc
Confidence 9999999999999999999999999994 789999999999998654 457999999999999999999998
Q ss_pred CCCCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCC-cceeE
Q 002128 175 ESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSD-CVRSF 253 (962)
Q Consensus 175 ~~~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~-~~~~~ 253 (962)
.....+++++++..|++|.||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+....... .....
T Consensus 161 ~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~ 240 (366)
T 2zfi_A 161 KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK 240 (366)
T ss_dssp TTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEE
T ss_pred ccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCcccee
Confidence 87778999999999999999999999999999999999999999999999999999999999999876543322 22346
Q ss_pred EEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCC----------CCCCccccCChhhhhhhccCC
Q 002128 254 VASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGK----------RSGHIPYRDSKLTRILQHSLG 323 (962)
Q Consensus 254 ~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~----------k~~hIPYRDSKLTrLLqdsLG 323 (962)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+. +..||||||||||+||||+||
T Consensus 241 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLg 320 (366)
T 2zfi_A 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLG 320 (366)
T ss_dssp EEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSS
T ss_pred EeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhC
Confidence 7999999999999999999999999999999999999999999998632 456999999999999999999
Q ss_pred CCCccceeeccCCCCcchHHHHHHHHHHHHhhcccccccccc
Q 002128 324 GNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNM 365 (962)
Q Consensus 324 GNskT~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN~ 365 (962)
|||+|+|||||||+..+++||++||+||+|||+|+|+|.++.
T Consensus 321 Gnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 321 GNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp TTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 999999999999999999999999999999999999998874
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.5e-82 Score=708.78 Aligned_cols=323 Identities=37% Similarity=0.567 Sum_probs=263.1
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCC----------------CCCCCceeecceecCCCCchhH
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHE----------------RVAQPSSFSFDKVFGPSCLTET 96 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~----------------~~~~~~~F~FD~VF~~~asQee 96 (962)
.++|+|+|||||++.+|...+...++.+.++.++++++.... .......|.||+||+++++|++
T Consensus 9 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~ 88 (355)
T 3lre_A 9 CHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSE 88 (355)
T ss_dssp ---CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHHH
T ss_pred cCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChHH
Confidence 468999999999999999998888888888888887665321 1123458999999999999999
Q ss_pred HHhhchHHHHHHHhcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcCC-CCceEEEeeeEEEeccccc
Q 002128 97 VYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNTP-ERDFTIKISGLEIYNENVR 169 (962)
Q Consensus 97 Vy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~~-~~~f~V~vS~lEIYnE~V~ 169 (962)
||+.++.|+|+++++|||+||||||||||||||||. ||+|+++.+||..+.... ...|.|.|||+|||||+|+
T Consensus 89 Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i~ 168 (355)
T 3lre_A 89 VFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIR 168 (355)
T ss_dssp HHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEEE
Confidence 999999999999999999999999999999999994 799999999999998654 4679999999999999999
Q ss_pred ccccCCCCCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCc
Q 002128 170 DLLNSESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDC 249 (962)
Q Consensus 170 DLL~~~~~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~ 249 (962)
|||++. .++.+++|+.+|++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+........
T Consensus 169 DLL~~~--~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 246 (355)
T 3lre_A 169 DLLVNS--GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASIN 246 (355)
T ss_dssp ESSSCC--CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCTT
T ss_pred ECcCCC--CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCCC
Confidence 999864 379999999999999999999999999999999999999999999999999999999999999876544433
Q ss_pred ceeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCC-CCCCccccCChhhhhhhccCCCCCcc
Q 002128 250 VRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGK-RSGHIPYRDSKLTRILQHSLGGNART 328 (962)
Q Consensus 250 ~~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~-k~~hIPYRDSKLTrLLqdsLGGNskT 328 (962)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++ +..||||||||||+||||+|||||+|
T Consensus 247 ~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt 326 (355)
T 3lre_A 247 QNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQT 326 (355)
T ss_dssp CCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEE
T ss_pred CCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceE
Confidence 34567999999999999999999999999999999999999999999998754 35699999999999999999999999
Q ss_pred ceeeccCCCCcchHHHHHHHHHHHHhhcc
Q 002128 329 AIICTLSPALSHFEQSRNTLFFATRAKEV 357 (962)
Q Consensus 329 ~mI~tISPs~~~~eETlsTLrFAsRAk~I 357 (962)
+|||||||+..+++||++||+||+|||+|
T Consensus 327 ~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 327 IMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986
No 12
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.1e-82 Score=726.41 Aligned_cols=335 Identities=37% Similarity=0.553 Sum_probs=274.2
Q ss_pred CCCCCCeEEEEecCCCChhhhhcCCceEEEecCC--cEEEEcCCCCC----------CCCCCceeecceecCC-------
Q 002128 30 KPREEKIVVTVRLRPLNKREQLAKDQVAWDCVDD--HTIVYKPQPHE----------RVAQPSSFSFDKVFGP------- 90 (962)
Q Consensus 30 ~~~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~--~tiv~~~~~~~----------~~~~~~~F~FD~VF~~------- 90 (962)
....++|+|+|||||++++|...+..+++.+... .+++..+.... .....+.|+||+||++
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~ 113 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEH 113 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTT
T ss_pred CCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCcc
Confidence 3345689999999999999988777666665443 22332222110 1123578999999976
Q ss_pred CCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcC----CCCceEEEeee
Q 002128 91 SCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNT----PERDFTIKISG 160 (962)
Q Consensus 91 ~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~----~~~~f~V~vS~ 160 (962)
.++|++||+.++.|+|+++++|||+||||||||||||||||+ ||+|+++.+||+.|... ++..|.|+|||
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~ 193 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSY 193 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEE
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEE
Confidence 489999999999999999999999999999999999999995 79999999999999764 45689999999
Q ss_pred EEEecccccccccCCC----CCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEE
Q 002128 161 LEIYNENVRDLLNSES----GRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIR 236 (962)
Q Consensus 161 lEIYnE~V~DLL~~~~----~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~Ift 236 (962)
+|||||+|||||++.. ...|++++++.+|++|.||+++.|.++++++.+|..|..+|++++|.||..|||||+||+
T Consensus 194 lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ift 273 (443)
T 2owm_A 194 FEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273 (443)
T ss_dssp EEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEE
T ss_pred EEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEE
Confidence 9999999999998732 236999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecccC-CCcceeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCC------------
Q 002128 237 LSIQSTLREN-SDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKR------------ 303 (962)
Q Consensus 237 I~V~s~~~~~-~~~~~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k------------ 303 (962)
|+|++..... .+......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++.
T Consensus 274 i~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g 353 (443)
T 2owm_A 274 IMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353 (443)
T ss_dssp EEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------------
T ss_pred EEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccc
Confidence 9998764322 122234679999999999999999999999999999999999999999999987532
Q ss_pred --------CCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHHHHHHHHHHHHhhccccccccccc
Q 002128 304 --------SGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVNMV 366 (962)
Q Consensus 304 --------~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN~~ 366 (962)
..||||||||||+||||+|||||+|+|||||||+ +++||++||+||+|||+|+|+|.+|++
T Consensus 354 ~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp ----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred cccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 2499999999999999999999999999999997 599999999999999999999999985
No 13
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=8.2e-82 Score=702.32 Aligned_cols=322 Identities=38% Similarity=0.567 Sum_probs=264.9
Q ss_pred CCCCCCCCCCeEEEEecCCCChhhhhcCCceEEEecCC-cEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHH
Q 002128 26 PGGPKPREEKIVVTVRLRPLNKREQLAKDQVAWDCVDD-HTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKN 104 (962)
Q Consensus 26 p~~~~~~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~-~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~p 104 (962)
++.+...+++|+|+|||||++++|...+...++.+.++ ..+... ..+.|.||+||+++++|++||+.++.|
T Consensus 3 ~~~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~--------~~~~f~FD~Vf~~~~~Q~~vy~~~~~p 74 (344)
T 4a14_A 3 MGLPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG--------RDRHFGFHVVLAEDAGQEAVYQACVQP 74 (344)
T ss_dssp ------CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET--------TTEEEECSEEECTTCCHHHHHHHHTHH
T ss_pred CCCCCccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec--------ccceEEEEEEEecCcchhHHHHHHHHH
Confidence 34445577899999999999999987766555544433 333331 247899999999999999999999999
Q ss_pred HHHHHhcCCceeEEEeccCCCCCccccc------------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEecccccccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMR------------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLL 172 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~------------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL 172 (962)
+|+++++|||+||||||||||||||||. ||+|+++.+||+.+.......|.|+|||+|||||+|+|||
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL 154 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLL 154 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHH
Confidence 9999999999999999999999999993 7899999999999998888899999999999999999999
Q ss_pred cCCC-CCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCC----
Q 002128 173 NSES-GRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENS---- 247 (962)
Q Consensus 173 ~~~~-~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~---- 247 (962)
++.. ...+.+++++.++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++......
T Consensus 155 ~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~ 234 (344)
T 4a14_A 155 EVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPR 234 (344)
T ss_dssp SSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC--------
T ss_pred HhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCC
Confidence 8653 35799999999999999999999999999999999999999999999999999999999999988643221
Q ss_pred -CcceeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCC-CCCCccccCChhhhhhhccCCCC
Q 002128 248 -DCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGK-RSGHIPYRDSKLTRILQHSLGGN 325 (962)
Q Consensus 248 -~~~~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~-k~~hIPYRDSKLTrLLqdsLGGN 325 (962)
.......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.++ +..||||||||||+||||+||||
T Consensus 235 ~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGn 314 (344)
T 4a14_A 235 PAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGN 314 (344)
T ss_dssp ----CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTT
T ss_pred ccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCC
Confidence 1234567999999999999999999999999999999999999999999998754 45799999999999999999999
Q ss_pred CccceeeccCCCCcchHHHHHHHHHHHHhh
Q 002128 326 ARTAIICTLSPALSHFEQSRNTLFFATRAK 355 (962)
Q Consensus 326 skT~mI~tISPs~~~~eETlsTLrFAsRAk 355 (962)
|+|+|||||||+..+++||++||+||+|||
T Consensus 315 skt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 315 AKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 999999999999999999999999999996
No 14
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=3.8e-82 Score=699.76 Aligned_cols=311 Identities=40% Similarity=0.576 Sum_probs=288.9
Q ss_pred CCCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHHhc
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSALM 111 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~ 111 (962)
..++|+|+|||||++++|...++..++.+.++.++.+. .+.|.||+||+++++|++||+.++.|+|+++++
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~ 75 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA---------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLE 75 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred CCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC---------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhC
Confidence 46789999999999999988887777777777777653 368999999999999999999999999999999
Q ss_pred CCceeEEEeccCCCCCccccc---------CCchHHHHHHHHHHhc-CCCCceEEEeeeEEEecccccccccCCCCCcce
Q 002128 112 GINATIFAYGQTSSGKTYTMR---------GITEKAVVDIYNHIMN-TPERDFTIKISGLEIYNENVRDLLNSESGRNLK 181 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM~---------Gii~ral~dLF~~i~~-~~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~L~ 181 (962)
|||+||||||||||||||||. ||+|+++.+||+.+.. .....|.|+|||+|||||+|||||++... .+.
T Consensus 76 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~-~l~ 154 (325)
T 1bg2_A 76 GYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKT-NLS 154 (325)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCC-SBC
T ss_pred CCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCC-Cce
Confidence 999999999999999999996 6899999999999975 45678999999999999999999987654 899
Q ss_pred eeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEe
Q 002128 182 LLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVD 261 (962)
Q Consensus 182 i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVD 261 (962)
+++++.++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .....|+|+|||
T Consensus 155 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~skl~lVD 231 (325)
T 1bg2_A 155 VHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT---EQKLSGKLYLVD 231 (325)
T ss_dssp EEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT---CCEEEEEEEEEE
T ss_pred EEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC---CcEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998764432 235679999999
Q ss_pred cCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcch
Q 002128 262 LAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHF 341 (962)
Q Consensus 262 LAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~ 341 (962)
||||||.+++++.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||+..++
T Consensus 232 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~--~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~ 309 (325)
T 1bg2_A 232 LAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG--STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNE 309 (325)
T ss_dssp CCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTT--CSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGH
T ss_pred CCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcC--CCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccH
Confidence 9999999999999999999999999999999999999975 46999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 002128 342 EQSRNTLFFATRAKEV 357 (962)
Q Consensus 342 eETlsTLrFAsRAk~I 357 (962)
+||++||+||+|||+|
T Consensus 310 ~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 310 SETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999999987
No 15
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-80 Score=692.38 Aligned_cols=325 Identities=32% Similarity=0.479 Sum_probs=256.3
Q ss_pred CCCCCCCCCCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCC------CCCCCceeecceecCCCCchhHHH
Q 002128 25 TPGGPKPREEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHE------RVAQPSSFSFDKVFGPSCLTETVY 98 (962)
Q Consensus 25 ~p~~~~~~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~------~~~~~~~F~FD~VF~~~asQeeVy 98 (962)
.|.+.....++|+|+|||||+++.|.. ......+..+|.+..+... .......|.||+||+ +++|++||
T Consensus 15 ~P~~~~~~~~~i~V~vRvRP~~~~e~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy 89 (359)
T 3nwn_A 15 VPRGSMGTRKKVHAFVRVKPTDDFAHE----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVY 89 (359)
T ss_dssp ---------CCEEEEEEECCCSSCCTT----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHH
T ss_pred CCCCCCCCCCCEEEEEEcCCCCccccc----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHH
Confidence 455555567899999999999876632 1222234456655544321 122346799999997 58999999
Q ss_pred hhchHHHHHHHhcCCceeEEEeccCCCCCccccc---------CCchHHHHHHHHHHhcCCCCceEEEeeeEEEeccccc
Q 002128 99 EEGVKNVALSALMGINATIFAYGQTSSGKTYTMR---------GITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVR 169 (962)
Q Consensus 99 ~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~---------Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~ 169 (962)
+.+++|+|+++++|||+||||||||||||||||+ ||+||++.+||+.+...+...|.|+|||+|||||+||
T Consensus 90 ~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~ 169 (359)
T 3nwn_A 90 ETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLF 169 (359)
T ss_dssp HHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccc
Confidence 9999999999999999999999999999999995 6899999999999999999999999999999999999
Q ss_pred ccccCCC-----CCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecc
Q 002128 170 DLLNSES-----GRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLR 244 (962)
Q Consensus 170 DLL~~~~-----~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~ 244 (962)
|||++.. ...+.+.+++ .|++|.+++++.|.+.++++.++..|..+|.+++|.+|..|||||+||+|+|.....
T Consensus 170 DLL~~~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~ 248 (359)
T 3nwn_A 170 DLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSR 248 (359)
T ss_dssp ETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC--
T ss_pred cccccccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecc
Confidence 9998643 2356677776 579999999999999999999999999999999999999999999999999987654
Q ss_pred cCCCcceeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCC
Q 002128 245 ENSDCVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGG 324 (962)
Q Consensus 245 ~~~~~~~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGG 324 (962)
...+ .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ +..||||||||||+||||+|||
T Consensus 249 ~~~~-~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~-~~~hVPYRdSkLT~lLqdsLgG 326 (359)
T 3nwn_A 249 TLSE-EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ-KRDHIPFRQCKLTHALKDSLGG 326 (359)
T ss_dssp ------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC------CCGGGSHHHHHTHHHHSS
T ss_pred cccC-cccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhc-CCCcCCcccCHHHHHHHHhcCC
Confidence 3322 2346799999999999999999999999999999999999999999999875 4579999999999999999999
Q ss_pred CCccceeeccCCCCcchHHHHHHHHHHHHhhcc
Q 002128 325 NARTAIICTLSPALSHFEQSRNTLFFATRAKEV 357 (962)
Q Consensus 325 NskT~mI~tISPs~~~~eETlsTLrFAsRAk~I 357 (962)
||+|+|||||||+..+++||++||+||+|||.|
T Consensus 327 nskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 327 NCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp SSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999987
No 16
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=3.3e-80 Score=691.37 Aligned_cols=321 Identities=38% Similarity=0.592 Sum_probs=258.9
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCC-----CCCCCCceeecceec--------CCCCchhHHHhhc
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPH-----ERVAQPSSFSFDKVF--------GPSCLTETVYEEG 101 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~-----~~~~~~~~F~FD~VF--------~~~asQeeVy~~~ 101 (962)
+|+|+|||||++++|...+..+++.+.+..++ +.++.. .....++.|.||+|| ++.++|++||+.+
T Consensus 2 ~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~-~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVI-LNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp CEEEEEEECCCCHHHHHHTCCBCEEEETTEEE-ECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CcEEEEECCCCChhhhccCCceEEEeCCCeEE-EeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 69999999999999998887777777665544 443321 122346789999999 4568999999999
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhc--CCCCceEEEeeeEEEeccccccccc
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMN--TPERDFTIKISGLEIYNENVRDLLN 173 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~--~~~~~f~V~vS~lEIYnE~V~DLL~ 173 (962)
+.|+|+++++|||+||||||||||||||||+ ||+|+++.+||..+.. .....|.|+|||+|||||+|+|||+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 9999999999999999999999999999994 7999999999999864 3456799999999999999999998
Q ss_pred CCC-CCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccC-CCcce
Q 002128 174 SES-GRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLREN-SDCVR 251 (962)
Q Consensus 174 ~~~-~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~-~~~~~ 251 (962)
+.. ...+++++++..|++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+..... .+...
T Consensus 161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 240 (354)
T 3gbj_A 161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSG 240 (354)
T ss_dssp ------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEE
T ss_pred CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCC
Confidence 764 3579999999999999999999999999999999999999999999999999999999999998764332 22334
Q ss_pred eEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccC----CCCCCccccCChhhhhhhccCCCCCc
Q 002128 252 SFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVG----KRSGHIPYRDSKLTRILQHSLGGNAR 327 (962)
Q Consensus 252 ~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g----~k~~hIPYRDSKLTrLLqdsLGGNsk 327 (962)
...|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.. ++..||||||||||+||||+|||||+
T Consensus 241 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnsk 320 (354)
T 3gbj_A 241 EKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSK 320 (354)
T ss_dssp EEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCE
T ss_pred eeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCe
Confidence 56899999999999999999999999999999999999999999999863 24579999999999999999999999
Q ss_pred cceeeccCCCCcchHHHHHHHHHHHHhhc
Q 002128 328 TAIICTLSPALSHFEQSRNTLFFATRAKE 356 (962)
Q Consensus 328 T~mI~tISPs~~~~eETlsTLrFAsRAk~ 356 (962)
|+|||||||+..+++||++||+||.||+.
T Consensus 321 t~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 321 TAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred EEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999985
No 17
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-79 Score=679.58 Aligned_cols=315 Identities=36% Similarity=0.573 Sum_probs=268.9
Q ss_pred CCCeEEEEecCCCChhhhhcCC---ceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHHH
Q 002128 33 EEKIVVTVRLRPLNKREQLAKD---QVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSA 109 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~---~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~sv 109 (962)
.++|+|+|||||+++.|..... ...+...++..+..... ..+..|.||+||+++++|++||+. +.|+|+++
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~ 76 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK-----GKPVSFELDKVFSPQASQQDVFQE-VQALVTSC 76 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET-----TEEEEEECSEEECTTCCHHHHHTT-THHHHHHH
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC-----CCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHH
Confidence 4689999999999998864322 22333334444443322 235789999999999999999998 68999999
Q ss_pred hcCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcC-CCCceEEEeeeEEEecccccccccCCCCCc--c
Q 002128 110 LMGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNT-PERDFTIKISGLEIYNENVRDLLNSESGRN--L 180 (962)
Q Consensus 110 l~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~-~~~~f~V~vS~lEIYnE~V~DLL~~~~~~~--L 180 (962)
++|||+||||||||||||||||. ||+|+++.+||+.+... ....|.|+|||+|||||+|||||++..... +
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i 156 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 156 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCC
T ss_pred hCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceE
Confidence 99999999999999999999996 69999999999999765 356899999999999999999998765444 4
Q ss_pred eeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEE
Q 002128 181 KLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFV 260 (962)
Q Consensus 181 ~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fV 260 (962)
++.+++.++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++.... ......|+|+||
T Consensus 157 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~---~~~~~~skL~lV 233 (330)
T 2h58_A 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS---TGLRTTGKLNLV 233 (330)
T ss_dssp EECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT---TTEEEEEEEEEE
T ss_pred EEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC---CCcEEEEEEEEE
Confidence 45568889999999999999999999999999999999999999999999999999999876432 234568999999
Q ss_pred ecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcc
Q 002128 261 DLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSH 340 (962)
Q Consensus 261 DLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~ 340 (962)
|||||||..++++.|.|++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||+..+
T Consensus 234 DLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~--~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~ 311 (330)
T 2h58_A 234 DLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR--QGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKN 311 (330)
T ss_dssp ECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTT--CSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGG
T ss_pred eCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcC--CCCCcccccHHHHHHHHHhCCCceEEEEEEeCCcccc
Confidence 99999999999999999999999999999999999999864 5699999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccc
Q 002128 341 FEQSRNTLFFATRAKEVT 358 (962)
Q Consensus 341 ~eETlsTLrFAsRAk~Ik 358 (962)
++||++||+||+|||+|+
T Consensus 312 ~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 312 TSETLYSLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhhCc
Confidence 999999999999999986
No 18
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.2e-79 Score=691.80 Aligned_cols=317 Identities=35% Similarity=0.496 Sum_probs=260.8
Q ss_pred CCCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCC----CCCCceeecceecCCCCchhHHHhhchHHHHH
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHER----VAQPSSFSFDKVFGPSCLTETVYEEGVKNVAL 107 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~----~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~ 107 (962)
..++|+|+|||||++++|...+...++.+.++.++++..+.... ....+.|.||+||+++++|++||+.++.|+|+
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~ 128 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 128 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHH
Confidence 47899999999999999988877777777777666654332111 01246899999999999999999999999999
Q ss_pred HHhcCCceeEEEeccCCCCCcccccC------------CchHHHHHHHHHHhcC--CCCceEEEeeeEEEeccccccccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTMRG------------ITEKAVVDIYNHIMNT--PERDFTIKISGLEIYNENVRDLLN 173 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM~G------------ii~ral~dLF~~i~~~--~~~~f~V~vS~lEIYnE~V~DLL~ 173 (962)
++++|||+||||||||||||||||.| |+|+++.+||..+... ....|.|+|||+|||||+|||||+
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~ 208 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN 208 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCC
Confidence 99999999999999999999999965 7899999999998653 346799999999999999999998
Q ss_pred CCCCCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeE
Q 002128 174 SESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSF 253 (962)
Q Consensus 174 ~~~~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~ 253 (962)
+. ..+++++|+.++++|.||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++. ...
T Consensus 209 ~~--~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~ 278 (387)
T 2heh_A 209 KK--AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK--------GRM 278 (387)
T ss_dssp TT--EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS--------SSE
T ss_pred CC--ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC--------Cee
Confidence 75 37999999999999999999999999999999999999999999999999999999999999764 135
Q ss_pred EEEEEEEecCCCccccccc-cchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhcc-CCCCCcccee
Q 002128 254 VASLNFVDLAGSERASQTH-ADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHS-LGGNARTAII 331 (962)
Q Consensus 254 ~skL~fVDLAGSER~~kt~-~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqds-LGGNskT~mI 331 (962)
.|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||||+ |||||+|+||
T Consensus 279 ~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~--~~~hvPYRdSKLTrlLqdsllGgnskT~mI 356 (387)
T 2heh_A 279 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ--NKAHTPFRESKLTQVLRDSFIGENSRTCMI 356 (387)
T ss_dssp EEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHT--TCSCCCGGGSHHHHHTGGGGSSTTEEEEEE
T ss_pred eeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhc--CCCCCCccccHHHHHHhhhccCCCCeEEEE
Confidence 7999999999999998886 4678889999999999999999999986 4569999999999999999 6999999999
Q ss_pred eccCCCCcchHHHHHHHHHHHHhhccccc
Q 002128 332 CTLSPALSHFEQSRNTLFFATRAKEVTNN 360 (962)
Q Consensus 332 ~tISPs~~~~eETlsTLrFAsRAk~Ikn~ 360 (962)
|||||+..+++||++||+||+|||+|++.
T Consensus 357 a~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 357 ATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred EEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999999864
No 19
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=2.6e-79 Score=683.30 Aligned_cols=323 Identities=30% Similarity=0.466 Sum_probs=259.7
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCC----cEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHH
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDD----HTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALS 108 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~----~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~s 108 (962)
.++|+|+|||||+++.|...+....+...++ ..+.+..... ......|.||+||+++++|++||+. +.|+|++
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~ 80 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEG--RILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQS 80 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC----CEEEEEEESEEECTTCCHHHHHHH-HHHHHHG
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCC--cccceeeecCEEECCCccHHHHHHH-HHHHHHH
Confidence 3689999999999999987766665554322 2344432211 1225689999999999999999998 6799999
Q ss_pred HhcCCceeEEEeccCCCCCcccc----cCCchHHHHHHHHHHhcCC--CCceEEEeeeEEEecccccccccCCC------
Q 002128 109 ALMGINATIFAYGQTSSGKTYTM----RGITEKAVVDIYNHIMNTP--ERDFTIKISGLEIYNENVRDLLNSES------ 176 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM----~Gii~ral~dLF~~i~~~~--~~~f~V~vS~lEIYnE~V~DLL~~~~------ 176 (962)
+++|||+|||||||||||||||| .||+|+++.+||+.+.... ...|.|+|||+|||||+|+|||++..
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~ 160 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNID 160 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---------
T ss_pred HHCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccccc
Confidence 99999999999999999999999 4899999999999987643 45799999999999999999998643
Q ss_pred ----CCcceeeeCC-CCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcce
Q 002128 177 ----GRNLKLLDDP-EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVR 251 (962)
Q Consensus 177 ----~~~L~i~ed~-~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~ 251 (962)
...+.+++++ .+|++|.|++++.|.++++++.+|..|.++|++++|.||+.|||||+||+|+|++...... .
T Consensus 161 ~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~---~ 237 (349)
T 3t0q_A 161 EILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTG---E 237 (349)
T ss_dssp ------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTC---C
T ss_pred cccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCC---C
Confidence 2356677665 4579999999999999999999999999999999999999999999999999987654332 3
Q ss_pred eEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCC-CCCccccCChhhhhhhccCCCCCccce
Q 002128 252 SFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKR-SGHIPYRDSKLTRILQHSLGGNARTAI 330 (962)
Q Consensus 252 ~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k-~~hIPYRDSKLTrLLqdsLGGNskT~m 330 (962)
...|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+++ ..||||||||||+||||+|||||+|+|
T Consensus 238 ~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~m 317 (349)
T 3t0q_A 238 TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLM 317 (349)
T ss_dssp EEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEE
T ss_pred eeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEE
Confidence 4679999999999999999999999999999999999999999999987532 359999999999999999999999999
Q ss_pred eeccCCCCcchHHHHHHHHHHHHhhcccccc
Q 002128 331 ICTLSPALSHFEQSRNTLFFATRAKEVTNNA 361 (962)
Q Consensus 331 I~tISPs~~~~eETlsTLrFAsRAk~Ikn~~ 361 (962)
||||||+..+++||++||+||+|++.|+..+
T Consensus 318 i~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 318 FVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999998543
No 20
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=2.2e-79 Score=685.63 Aligned_cols=322 Identities=32% Similarity=0.449 Sum_probs=272.5
Q ss_pred CeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCC----CCCCceeecceecCCCCchhHHHhhchHHHHHHHh
Q 002128 35 KIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHER----VAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSAL 110 (962)
Q Consensus 35 ~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~----~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl 110 (962)
.|+|+|||||+++.|...+...++.+.++.++.+..+.... ......|.||+||+++++|++||+.++.|+|.+++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 48999999999999988887777777788887765442110 01236899999999999999999999999999999
Q ss_pred c-CCceeEEEeccCCCCCccccc-----------CCchHHHHHHHHHHhc-CCCCceEEEeeeEEEecccccccccCCCC
Q 002128 111 M-GINATIFAYGQTSSGKTYTMR-----------GITEKAVVDIYNHIMN-TPERDFTIKISGLEIYNENVRDLLNSESG 177 (962)
Q Consensus 111 ~-G~N~tIfAYGqTGSGKTyTM~-----------Gii~ral~dLF~~i~~-~~~~~f~V~vS~lEIYnE~V~DLL~~~~~ 177 (962)
+ |||+||||||||||||||||. ||+|+++.+||..+.. .....|.|+|||+|||||+|+|||++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 6 999999999999999999994 5889999999999975 3456899999999999999999998753
Q ss_pred CcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEE
Q 002128 178 RNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASL 257 (962)
Q Consensus 178 ~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL 257 (962)
.+.+++++.++++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|.+... ....|+|
T Consensus 160 -~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~------~~~~skL 232 (360)
T 1ry6_A 160 -MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK------NTSLGKI 232 (360)
T ss_dssp ----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT------TEEEEEE
T ss_pred -cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC------CcceeEE
Confidence 677889999999999999999999999999999999999999999999999999999999986421 2457999
Q ss_pred EEEecCCCccccccccch-hhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCC
Q 002128 258 NFVDLAGSERASQTHADG-ARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSP 336 (962)
Q Consensus 258 ~fVDLAGSER~~kt~~~G-~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISP 336 (962)
+|||||||||..++++.| .+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+|||||||
T Consensus 233 ~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~--~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP 310 (360)
T 1ry6_A 233 AFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD--KNHIPFRDSELTKVLRDIFVGKSKSIMIANISP 310 (360)
T ss_dssp EEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECC
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcC--CCCCccccCHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 999999999999998876 57899999999999999999999864 469999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhccccccccccc
Q 002128 337 ALSHFEQSRNTLFFATRAKEVTNNAQVNMV 366 (962)
Q Consensus 337 s~~~~eETlsTLrFAsRAk~Ikn~~~vN~~ 366 (962)
+..+++||++||+||+|||+|+|.+..|..
T Consensus 311 ~~~~~~ETlsTLrfA~rak~i~n~~~~~~~ 340 (360)
T 1ry6_A 311 TISCCEQTLNTLRYSSRVKNKGNSKLEGKP 340 (360)
T ss_dssp BGGGHHHHHHHHHHHHHHCC----------
T ss_pred CcccHHHHHHHHHHHHHHhhcccCcccCCC
Confidence 999999999999999999999996665543
No 21
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=3.4e-79 Score=692.14 Aligned_cols=319 Identities=34% Similarity=0.490 Sum_probs=262.5
Q ss_pred CCCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCC----CCCCceeecceecCCCCchhHHHhhchHHHHH
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHER----VAQPSSFSFDKVFGPSCLTETVYEEGVKNVAL 107 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~----~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~ 107 (962)
..++|+|+|||||++..|...+...++.+.++.++++..+.... ......|.||+||+++++|++||+.++.|+|+
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~ 148 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 148 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHH
Confidence 36789999999999999988877777777777776654332111 01246899999999999999999999999999
Q ss_pred HHhcCCceeEEEeccCCCCCcccccC------------CchHHHHHHHHHHhcC--CCCceEEEeeeEEEeccccccccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTMRG------------ITEKAVVDIYNHIMNT--PERDFTIKISGLEIYNENVRDLLN 173 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM~G------------ii~ral~dLF~~i~~~--~~~~f~V~vS~lEIYnE~V~DLL~ 173 (962)
++++|||+||||||||||||||||.| |+|+++.+||..+... ....|.|+|||+|||||+|||||+
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~ 228 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN 228 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCC
Confidence 99999999999999999999999965 8899999999998643 356799999999999999999998
Q ss_pred CCCCCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeE
Q 002128 174 SESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSF 253 (962)
Q Consensus 174 ~~~~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~ 253 (962)
+. ..+.+++|+.++++|.||+++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|.+. ...
T Consensus 229 ~~--~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~ 298 (410)
T 1v8k_A 229 KK--AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK--------GRL 298 (410)
T ss_dssp TT--EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS--------SSE
T ss_pred CC--CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC--------Ccc
Confidence 64 37999999999999999999999999999999999999999999999999999999999999764 135
Q ss_pred EEEEEEEecCCCccccccc-cchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhcc-CCCCCcccee
Q 002128 254 VASLNFVDLAGSERASQTH-ADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHS-LGGNARTAII 331 (962)
Q Consensus 254 ~skL~fVDLAGSER~~kt~-~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqds-LGGNskT~mI 331 (962)
.|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||||+ |||||+|+||
T Consensus 299 ~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~--~~~hIPYRdSKLTrLLqdsllGgnskT~mI 376 (410)
T 1v8k_A 299 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ--NKAHTPFRESKLTQVLRDSFIGENSRTCMI 376 (410)
T ss_dssp EEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC--------CCCCHHHHHTTHHHHSSSEEEEEE
T ss_pred eeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhc--CCCCCCcccchhHHHHhhcccCCCceEEEE
Confidence 7999999999999998886 4678889999999999999999999986 4569999999999999999 6999999999
Q ss_pred eccCCCCcchHHHHHHHHHHHHhhccccccc
Q 002128 332 CTLSPALSHFEQSRNTLFFATRAKEVTNNAQ 362 (962)
Q Consensus 332 ~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~ 362 (962)
|||||+..+++||++||+||+|||.|..+|.
T Consensus 377 a~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 377 AMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred EEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999999986653
No 22
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.8e-79 Score=684.28 Aligned_cols=320 Identities=34% Similarity=0.474 Sum_probs=246.2
Q ss_pred CCCCeEEEEecCCCChhhhhcCCc-eEEEe------cCCcEEEEcCCCC--------CCCCCCceeecceecCCCCchhH
Q 002128 32 REEKIVVTVRLRPLNKREQLAKDQ-VAWDC------VDDHTIVYKPQPH--------ERVAQPSSFSFDKVFGPSCLTET 96 (962)
Q Consensus 32 ~~e~IrV~VRVRPl~~~E~~~~~~-~~v~~------~~~~tiv~~~~~~--------~~~~~~~~F~FD~VF~~~asQee 96 (962)
-.++|+|+|||||++++|...+.. ..+.. .++.++.+..+.. ........|.||+||+++++|++
T Consensus 20 ~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~ 99 (376)
T 2rep_A 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDE 99 (376)
T ss_dssp ---CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHH
T ss_pred cCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchh
Confidence 346899999999999999765432 11111 2445555543211 01123468999999999999999
Q ss_pred HHhhchHHHHHHHhcCCceeEEEeccCCCCCccccc----------CCchHHHHHHHHHHhcC--CCCceEEEeeeEEEe
Q 002128 97 VYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR----------GITEKAVVDIYNHIMNT--PERDFTIKISGLEIY 164 (962)
Q Consensus 97 Vy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~----------Gii~ral~dLF~~i~~~--~~~~f~V~vS~lEIY 164 (962)
||+. +.|+|+++++|||+||||||||||||||||. ||+|+++.+||+.+... ....|.|+|||+|||
T Consensus 100 Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIY 178 (376)
T 2rep_A 100 VFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIY 178 (376)
T ss_dssp HHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEE
T ss_pred hhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEE
Confidence 9998 5689999999999999999999999999995 58999999999999754 345899999999999
Q ss_pred cccccccccCCC----CCcceeeeC--CCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEE
Q 002128 165 NENVRDLLNSES----GRNLKLLDD--PEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLS 238 (962)
Q Consensus 165 nE~V~DLL~~~~----~~~L~i~ed--~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~ 238 (962)
||+|||||++.. ...+.++++ +.++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+
T Consensus 179 nE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~ 258 (376)
T 2rep_A 179 NETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ 258 (376)
T ss_dssp TTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEE
T ss_pred CCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEE
Confidence 999999998752 236788887 67899999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCCCcceeEEEEEEEEecCCCccccccccch----hhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChh
Q 002128 239 IQSTLRENSDCVRSFVASLNFVDLAGSERASQTHADG----ARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKL 314 (962)
Q Consensus 239 V~s~~~~~~~~~~~~~skL~fVDLAGSER~~kt~~~G----~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKL 314 (962)
|.+..... .....|+|+|||||||||..++++.| .|++|+.+||+||++||+||.+|+.+ ..|||||||||
T Consensus 259 v~~~~~~~---~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~--~~hVPYRdSkL 333 (376)
T 2rep_A 259 ISGEHSSR---GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK--ESHVPYRNSKL 333 (376)
T ss_dssp EEEEESSS---CCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTT--CSCCCGGGSHH
T ss_pred EEEEecCC---CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcC--CCccCCcCCHH
Confidence 98764332 23457999999999999999999999 99999999999999999999999864 56999999999
Q ss_pred hhhhhccCCCCCccceeeccCCCCcchHHHHHHHHHHHHhhcc
Q 002128 315 TRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEV 357 (962)
Q Consensus 315 TrLLqdsLGGNskT~mI~tISPs~~~~eETlsTLrFAsRAk~I 357 (962)
|+||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 334 T~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 334 TYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999864
No 23
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=3.1e-79 Score=681.96 Aligned_cols=323 Identities=33% Similarity=0.475 Sum_probs=261.1
Q ss_pred CCeEEEEecCCCCh-hhhhcCCceEEEecC----CcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHH
Q 002128 34 EKIVVTVRLRPLNK-REQLAKDQVAWDCVD----DHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALS 108 (962)
Q Consensus 34 e~IrV~VRVRPl~~-~E~~~~~~~~v~~~~----~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~s 108 (962)
++|+|+|||||+++ .|........+...+ ..++.+..+. .......|.||+||+++++|++||+. +.|+|++
T Consensus 3 ~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~ 79 (347)
T 1f9v_A 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ--NTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQS 79 (347)
T ss_dssp CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGG--GTTCEEEEEESEEECTTCCHHHHHHH-HHHHHGG
T ss_pred CCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCC--CCcCceEEeeCEEECCCCCHHHHHHH-HHHHHHH
Confidence 67999999999987 442222222222111 1234433221 11235789999999999999999998 6799999
Q ss_pred HhcCCceeEEEeccCCCCCccccc----CCchHHHHHHHHHHhcC--CCCceEEEeeeEEEecccccccccCCCC-----
Q 002128 109 ALMGINATIFAYGQTSSGKTYTMR----GITEKAVVDIYNHIMNT--PERDFTIKISGLEIYNENVRDLLNSESG----- 177 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM~----Gii~ral~dLF~~i~~~--~~~~f~V~vS~lEIYnE~V~DLL~~~~~----- 177 (962)
+++|||+||||||||||||||||. ||+|+++.+||+.+... ....|.|+|||+|||||+|||||++...
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~ 159 (347)
T 1f9v_A 80 SLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT 159 (347)
T ss_dssp GGGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC---------
T ss_pred hcCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCcccccccc
Confidence 999999999999999999999994 89999999999999754 3458999999999999999999987643
Q ss_pred ---CcceeeeC-CCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeE
Q 002128 178 ---RNLKLLDD-PEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSF 253 (962)
Q Consensus 178 ---~~L~i~ed-~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~ 253 (962)
..+.++++ +.++++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|.+..... ....
T Consensus 160 ~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~ 236 (347)
T 1f9v_A 160 SIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT---GAHS 236 (347)
T ss_dssp ----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC-----CCEE
T ss_pred ccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCC---Ccee
Confidence 24667665 4578999999999999999999999999999999999999999999999999998764322 2346
Q ss_pred EEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCC-CCCCccccCChhhhhhhccCCCCCccceee
Q 002128 254 VASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGK-RSGHIPYRDSKLTRILQHSLGGNARTAIIC 332 (962)
Q Consensus 254 ~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~-k~~hIPYRDSKLTrLLqdsLGGNskT~mI~ 332 (962)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++ +..||||||||||+||||+|||||+|+|||
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 7999999999999999999999999999999999999999999998754 247999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHHHHhhccccccc
Q 002128 333 TLSPALSHFEQSRNTLFFATRAKEVTNNAQ 362 (962)
Q Consensus 333 tISPs~~~~eETlsTLrFAsRAk~Ikn~~~ 362 (962)
||||+..+++||++||+||+||+.|+..++
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999997764
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.2e-78 Score=679.23 Aligned_cols=319 Identities=32% Similarity=0.489 Sum_probs=256.9
Q ss_pred CCCCCCeEEEEecCCCChhhhhcCCceEEEe-cCCcEEEEcCCCCCC------CCCCceeecceecCCCCchhHHHhhch
Q 002128 30 KPREEKIVVTVRLRPLNKREQLAKDQVAWDC-VDDHTIVYKPQPHER------VAQPSSFSFDKVFGPSCLTETVYEEGV 102 (962)
Q Consensus 30 ~~~~e~IrV~VRVRPl~~~E~~~~~~~~v~~-~~~~tiv~~~~~~~~------~~~~~~F~FD~VF~~~asQeeVy~~~v 102 (962)
....++|+|+|||||+.+.+. . .+.+ .++.++.+..+.... ....+.|.||+|| ++++|++||+.++
T Consensus 19 ~~~~g~IrV~vRvRP~~~~~~---~--~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf-~~~sQ~~Vy~~~~ 92 (358)
T 2nr8_A 19 SGTRKKVHAFVRVKPTDDFAH---E--MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVL-HDASQDLVYETVA 92 (358)
T ss_dssp ----CCEEEEEEECCCSSCCT---T--TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEE-ESCCHHHHHHHHT
T ss_pred CCCCCCeEEEEEcCCCCCCcc---c--eeEECCCCCEEEEecCCccccccccCCCcceEEECCeec-CCcCHHHHHHHHH
Confidence 334678999999999875432 1 2233 344555554432211 1234679999999 4899999999999
Q ss_pred HHHHHHHhcCCceeEEEeccCCCCCcccc---------cCCchHHHHHHHHHHhcCCCCceEEEeeeEEEeccccccccc
Q 002128 103 KNVALSALMGINATIFAYGQTSSGKTYTM---------RGITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDLLN 173 (962)
Q Consensus 103 ~plV~svl~G~N~tIfAYGqTGSGKTyTM---------~Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DLL~ 173 (962)
.|+|+++++|||+|||||||||||||||| .||+|+++.+||+.+.......|.|+|||+|||||+|+|||+
T Consensus 93 ~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 93 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcC
Confidence 99999999999999999999999999999 478999999999999998889999999999999999999998
Q ss_pred CCC-----CCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCC
Q 002128 174 SES-----GRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSD 248 (962)
Q Consensus 174 ~~~-----~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~ 248 (962)
+.. ..++.+++++ .|++|.|++++.|.+.++++.+|..|.++|++++|.||..|||||+||+|+|++......
T Consensus 173 ~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~- 250 (358)
T 2nr8_A 173 TLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLS- 250 (358)
T ss_dssp SSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred CccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCC-
Confidence 642 3478999998 789999999999999999999999999999999999999999999999999987643322
Q ss_pred cceeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCcc
Q 002128 249 CVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNART 328 (962)
Q Consensus 249 ~~~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT 328 (962)
......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.+ +..||||||||||+||||+|||||+|
T Consensus 251 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~~hiPyRdSkLT~LLqdsLgGnskt 329 (358)
T 2nr8_A 251 EEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ-KRDHIPFRQCKLTHALKDSLGGNCNM 329 (358)
T ss_dssp --CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC------CCGGGSHHHHHTHHHHSSSSEE
T ss_pred CCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCCCccCHHHHHHHHhcCCCCeE
Confidence 22345799999999999999999999999999999999999999999999865 45799999999999999999999999
Q ss_pred ceeeccCCCCcchHHHHHHHHHHHHhhcc
Q 002128 329 AIICTLSPALSHFEQSRNTLFFATRAKEV 357 (962)
Q Consensus 329 ~mI~tISPs~~~~eETlsTLrFAsRAk~I 357 (962)
+|||||||+..+++||++||+||+|||.|
T Consensus 330 ~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 330 VLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-77 Score=679.69 Aligned_cols=323 Identities=35% Similarity=0.509 Sum_probs=266.5
Q ss_pred CCeEEEEecCCCChh-hhhcCCceEEEecCC----cEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchHHHHHH
Q 002128 34 EKIVVTVRLRPLNKR-EQLAKDQVAWDCVDD----HTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVKNVALS 108 (962)
Q Consensus 34 e~IrV~VRVRPl~~~-E~~~~~~~~v~~~~~----~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~s 108 (962)
++|+|+|||||+.+. |........+...++ .++...... .......|.||+||+++++|++||+. +.|+|++
T Consensus 59 gnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~~lv~~ 135 (403)
T 4etp_A 59 GNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQ--NTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQS 135 (403)
T ss_dssp CSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECS--SSCEEEEEEESEEECTTCCHHHHHHH-HHHHHHH
T ss_pred CCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCC--CCcCceEEEcCEEECCCCchHHHHHH-HHHHHHH
Confidence 689999999999877 333333333332222 233332221 11235789999999999999999998 6689999
Q ss_pred HhcCCceeEEEeccCCCCCcccc----cCCchHHHHHHHHHHhc--CCCCceEEEeeeEEEecccccccccCCC------
Q 002128 109 ALMGINATIFAYGQTSSGKTYTM----RGITEKAVVDIYNHIMN--TPERDFTIKISGLEIYNENVRDLLNSES------ 176 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM----~Gii~ral~dLF~~i~~--~~~~~f~V~vS~lEIYnE~V~DLL~~~~------ 176 (962)
+++|||+|||||||||||||||| .||+|+++.+||..+.. .....|.|+|||+|||||+|+|||++..
T Consensus 136 ~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~ 215 (403)
T 4etp_A 136 SLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDT 215 (403)
T ss_dssp HHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC--------
T ss_pred HhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccccccc
Confidence 99999999999999999999999 58999999999999975 3456899999999999999999998764
Q ss_pred --CCcceeeeCC-CCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeE
Q 002128 177 --GRNLKLLDDP-EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSF 253 (962)
Q Consensus 177 --~~~L~i~ed~-~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~ 253 (962)
...+.+++++ .++++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|.+..... ....
T Consensus 216 ~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~ 292 (403)
T 4etp_A 216 SIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT---GAHS 292 (403)
T ss_dssp CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT---CCEE
T ss_pred ccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCC---CCee
Confidence 2345666665 467999999999999999999999999999999999999999999999999998764332 2345
Q ss_pred EEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCC-CCCCccccCChhhhhhhccCCCCCccceee
Q 002128 254 VASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGK-RSGHIPYRDSKLTRILQHSLGGNARTAIIC 332 (962)
Q Consensus 254 ~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~-k~~hIPYRDSKLTrLLqdsLGGNskT~mI~ 332 (962)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+. ...||||||||||+||||+|||||+|+|||
T Consensus 293 ~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~ 372 (403)
T 4etp_A 293 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 372 (403)
T ss_dssp EEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEE
T ss_pred EEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEE
Confidence 7999999999999999999999999999999999999999999998653 235999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHHHHhhccccccc
Q 002128 333 TLSPALSHFEQSRNTLFFATRAKEVTNNAQ 362 (962)
Q Consensus 333 tISPs~~~~eETlsTLrFAsRAk~Ikn~~~ 362 (962)
||||+..+++||++||+||+|++.|+..++
T Consensus 373 ~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 373 NISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999999999987664
No 26
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=2e-77 Score=666.15 Aligned_cols=307 Identities=29% Similarity=0.455 Sum_probs=240.8
Q ss_pred CCCCCCCCCeEEEEecCCCChhhhhcCCceEEEecC---CcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhchH
Q 002128 27 GGPKPREEKIVVTVRLRPLNKREQLAKDQVAWDCVD---DHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEGVK 103 (962)
Q Consensus 27 ~~~~~~~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~---~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~v~ 103 (962)
+......++|+|+|||||+++.|.. +....+.... ...+... .+.|.||+||+++++|++||+.++.
T Consensus 15 ~m~~~~~~~VrV~vRvRP~~~~e~~-~~~~~v~~~~~~~~~~~~~~---------~~~F~FD~Vf~~~~sQ~~Vy~~~~~ 84 (344)
T 3dc4_A 15 GMEGAKLSAVRIAVREAPYRQFLGR-REPSVVQFPPWSDGKSLIVD---------QNEFHFDHAFPATISQDEMYQALIL 84 (344)
T ss_dssp ----CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEET---------TEEEECSEEECTTCCHHHHHHHHTH
T ss_pred CCCCCCCCCeEEEEECCCCCccccc-CCceEEEecCCCCCceEEec---------CcEEEcceEECCCCCHHHHHHhhcc
Confidence 4455667899999999999887633 3333444332 3444432 4689999999999999999999999
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCccccc------------CCchHHHHHHHHHHhcCCC---CceEEEeeeEEEecccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTMR------------GITEKAVVDIYNHIMNTPE---RDFTIKISGLEIYNENV 168 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM~------------Gii~ral~dLF~~i~~~~~---~~f~V~vS~lEIYnE~V 168 (962)
|+|+++++|||+||||||||||||||||. ||+|+++.+||+.+....+ ..|.|+|||+|||||+|
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i 164 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKP 164 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCE
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCee
Confidence 99999999999999999999999999994 8999999999999976543 46999999999999999
Q ss_pred cccccCCCCCcceeeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCC
Q 002128 169 RDLLNSESGRNLKLLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSD 248 (962)
Q Consensus 169 ~DLL~~~~~~~L~i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~ 248 (962)
+|||++....++ .+..+.+++++.|.+.++++.+|..|.++|++++|.||..|||||+||+|+|++.
T Consensus 165 ~DLL~~~~~~~~-------~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------ 231 (344)
T 3dc4_A 165 FDLLGSTPHMPM-------VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------ 231 (344)
T ss_dssp EETTSSCTTSBC-------CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------
T ss_pred EEccCCCCCCcc-------ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------
Confidence 999987654221 1223458999999999999999999999999999999999999999999999753
Q ss_pred cceeEEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCcc
Q 002128 249 CVRSFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNART 328 (962)
Q Consensus 249 ~~~~~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT 328 (962)
...|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|
T Consensus 232 ---~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~--~~hiPyRdSkLT~lLqdsLgGnskt 306 (344)
T 3dc4_A 232 ---THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAG--HTVIPYRDSVLTTVLQASLTAQSYL 306 (344)
T ss_dssp ---SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTT--CSSCCGGGSHHHHHTTTTSSTTCEE
T ss_pred ---CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhcc--CCcCCccccHHHHHHHHHhCCCCEE
Confidence 24689999999999999999999999999999999999999999999975 4699999999999999999999999
Q ss_pred ceeeccCCCCcchHHHHHHHHHHHHhhcccccc
Q 002128 329 AIICTLSPALSHFEQSRNTLFFATRAKEVTNNA 361 (962)
Q Consensus 329 ~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~ 361 (962)
+|||||||+..+++||++||+||+||+.....+
T Consensus 307 ~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 307 TFLACISPHQCDLSETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999987654
No 27
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=6.9e-77 Score=675.46 Aligned_cols=324 Identities=36% Similarity=0.524 Sum_probs=264.2
Q ss_pred CCCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCC--CCCCceeecceecCCCCchhHHHhhchHHHHHHHh
Q 002128 33 EEKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHER--VAQPSSFSFDKVFGPSCLTETVYEEGVKNVALSAL 110 (962)
Q Consensus 33 ~e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~--~~~~~~F~FD~VF~~~asQeeVy~~~v~plV~svl 110 (962)
.++|+|+|||||+.+.|.... .+.|...++.++.+....... ......|.||+||+++++|++||+. +.|+|++++
T Consensus 58 ~gnIrV~vRvRP~~~~E~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l 135 (412)
T 3u06_A 58 RDNIRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSAL 135 (412)
T ss_dssp TCSEEEEEEECCCCGGGTTSC-BCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHHH
T ss_pred CCCEEEEEEcCCCCchhccCc-ceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHH
Confidence 368999999999999886543 345666777777665433211 1225789999999999999999985 679999999
Q ss_pred cCCceeEEEeccCCCCCccccc------CCchHHHHHHHHHHhcC--CCCceEEEeeeEEEecccccccccCCCC-Ccce
Q 002128 111 MGINATIFAYGQTSSGKTYTMR------GITEKAVVDIYNHIMNT--PERDFTIKISGLEIYNENVRDLLNSESG-RNLK 181 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~------Gii~ral~dLF~~i~~~--~~~~f~V~vS~lEIYnE~V~DLL~~~~~-~~L~ 181 (962)
+|||+||||||||||||||||. ||+|+++.+||+.+... ....|.|+|||+|||||+|+|||++... ..++
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~ 215 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIR 215 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEE
T ss_pred CCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceee
Confidence 9999999999999999999994 79999999999999753 3568999999999999999999987643 2355
Q ss_pred eeeCCCCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEe
Q 002128 182 LLDDPEKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVD 261 (962)
Q Consensus 182 i~ed~~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVD 261 (962)
+.+++.++++|.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|.+..... .....|+|+|||
T Consensus 216 ~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~---~~~~~~kL~lVD 292 (412)
T 3u06_A 216 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK---QEISVGSINLVD 292 (412)
T ss_dssp ECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT---TEEEEEEEEEEE
T ss_pred eeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC---CCEEEEEEEEEE
Confidence 56788899999999999999999999999999999999999999999999999999998764432 345679999999
Q ss_pred cCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcch
Q 002128 262 LAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHF 341 (962)
Q Consensus 262 LAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~ 341 (962)
||||||.. .|.|++|+.+||+||++||+||.+|+. +..||||||||||+||||+|||||+|+|||||||+..++
T Consensus 293 LAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~--~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~ 366 (412)
T 3u06_A 293 LAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ--KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCF 366 (412)
T ss_dssp CCCCCC--------------CTTTHHHHHHHHHHHHHHT--TCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGH
T ss_pred CCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhc--cCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhH
Confidence 99999974 468999999999999999999999986 456999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc-cccccccc
Q 002128 342 EQSRNTLFFATRAKEVTN-NAQVNMVV 367 (962)
Q Consensus 342 eETlsTLrFAsRAk~Ikn-~~~vN~~~ 367 (962)
+||++||+||+|++.|+. +++.|...
T Consensus 367 ~ETl~TLrfA~rv~~i~~~~~~~n~~~ 393 (412)
T 3u06_A 367 QESVKSLRFAASVNSCKMTKAKRNRYL 393 (412)
T ss_dssp HHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHhhcccccccccccC
Confidence 999999999999999984 45555443
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.2e-72 Score=681.82 Aligned_cols=320 Identities=32% Similarity=0.495 Sum_probs=248.7
Q ss_pred CCCeEEEEecC----CCChhhhh-cCCceEEEec------CCcEEEEcCCCCCCCCCCceeecceecCCCCchhHHHhhc
Q 002128 33 EEKIVVTVRLR----PLNKREQL-AKDQVAWDCV------DDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTETVYEEG 101 (962)
Q Consensus 33 ~e~IrV~VRVR----Pl~~~E~~-~~~~~~v~~~------~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQeeVy~~~ 101 (962)
.++++|||||| |....|.. ..+...+..+ ....|++..+.. .....++|+||+||+++++|++||+.
T Consensus 373 l~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~fd~vf~~~~~q~~v~~~- 450 (715)
T 4h1g_A 373 KGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNIN-NNFSNLRFLFDKIFEREQSNDLVFEE- 450 (715)
T ss_dssp SCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEET-TEEEEEEEECSEEECSSCCHHHHGGG-
T ss_pred HhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCC-CCCCCeEEEeceEeCCCCCHHHHHHH-
Confidence 46899999999 44433433 3333333332 224444443322 22346799999999999999999987
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCccccc----CCchHHHHHHHHHHhcC--CCCceEEEeeeEEEecccccccccCC
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTMR----GITEKAVVDIYNHIMNT--PERDFTIKISGLEIYNENVRDLLNSE 175 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM~----Gii~ral~dLF~~i~~~--~~~~f~V~vS~lEIYnE~V~DLL~~~ 175 (962)
+.|+|+++++|||+||||||||||||||||. ||+||++.+||+.|... ....|.|+|||+|||||+|||||++.
T Consensus 451 ~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~ 530 (715)
T 4h1g_A 451 LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPK 530 (715)
T ss_dssp THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSCC
T ss_pred HHHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCCC
Confidence 5699999999999999999999999999995 79999999999999754 34579999999999999999999875
Q ss_pred C--CCcceeeeCC-CCCeEecCceEEeeCCHHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCccee
Q 002128 176 S--GRNLKLLDDP-EKGTVVEKLVEETANNDQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRS 252 (962)
Q Consensus 176 ~--~~~L~i~ed~-~~g~~V~gLte~~V~s~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~ 252 (962)
. ...+.+++++ .++++|.||+++.|.+.++++.+|..|..+|++++|.+|..|||||+||+|+|++..... ...
T Consensus 531 ~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~---~~~ 607 (715)
T 4h1g_A 531 IDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLT---KES 607 (715)
T ss_dssp CCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTT---CCE
T ss_pred CCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCC---CCE
Confidence 3 2356666555 455899999999999999999999999999999999999999999999999998764432 235
Q ss_pred EEEEEEEEecCCCccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceee
Q 002128 253 FVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIIC 332 (962)
Q Consensus 253 ~~skL~fVDLAGSER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~ 332 (962)
..|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+ +..|||||||||||||||+|||||+|+|||
T Consensus 608 ~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~-~~~~vpyR~SkLT~lL~~slggn~~t~~i~ 686 (715)
T 4h1g_A 608 SYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLK-DGSHVPYRNSKLTYLLKHSLGGNSKTLMFV 686 (715)
T ss_dssp EEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHC-SCCCCCGGGCHHHHHTGGGTSTTCEEEEEE
T ss_pred eEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcCCCccCHHHHHHHhhcCCCceEEEEE
Confidence 6799999999999999999999999999999999999999999999864 457999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHHHHhhccc
Q 002128 333 TLSPALSHFEQSRNTLFFATRAKEVT 358 (962)
Q Consensus 333 tISPs~~~~eETlsTLrFAsRAk~Ik 358 (962)
||||+..+++||++||+||+|||+|+
T Consensus 687 ~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 687 NISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EECCChhhHHHHHHHHHHHHHhccce
Confidence 99999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=1.1e-29 Score=235.53 Aligned_cols=99 Identities=42% Similarity=0.633 Sum_probs=94.3
Q ss_pred hhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHHHHHHHHHHHHhhccccc
Q 002128 281 GCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNN 360 (962)
Q Consensus 281 ~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~ 360 (962)
+.+||+||++||+||.+|+.+ +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|+|.
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~-~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~ 79 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEG-TKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNT 79 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHT-CCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEE
T ss_pred CCcchHHHHHHHHHHHHHHhc-CCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCc
Confidence 468999999999999999976 3579999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHH
Q 002128 361 AQVNMVVSDKQLVKHLQKEV 380 (962)
Q Consensus 361 ~~vN~~~~~~~li~~LqkEi 380 (962)
|.+|+..+.++++++|++|+
T Consensus 80 ~~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 80 VSVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp ECCEEECCHHHHHHHHHHHH
T ss_pred ceeccCCCHHHHHHHHHHhh
Confidence 99999999999999998886
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=3.2e-28 Score=232.27 Aligned_cols=99 Identities=42% Similarity=0.648 Sum_probs=92.5
Q ss_pred cccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHHHHHHHHHHHHhhccccccccc
Q 002128 285 NLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSRNTLFFATRAKEVTNNAQVN 364 (962)
Q Consensus 285 NkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eETlsTLrFAsRAk~Ikn~~~vN 364 (962)
|+||++||+||.+|+.+ +..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+||+.|+|.|.+|
T Consensus 1 N~SL~~Lg~vi~aL~~~-~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n 79 (117)
T 3kin_B 1 NKSLSALGNVISALAEG-TKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN 79 (117)
T ss_dssp CCHHHHHHHHHHHHHHS-CCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceec
Confidence 89999999999999986 34799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHH
Q 002128 365 MVVSDKQLVKHLQKEVARLE 384 (962)
Q Consensus 365 ~~~~~~~li~~LqkEi~~Le 384 (962)
...+.+.+++++++++.+++
T Consensus 80 ~~~~~~~l~~~~~~e~~~~~ 99 (117)
T 3kin_B 80 LELTAEEWKKKYEKEKEKNK 99 (117)
T ss_dssp BCCCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHH
Confidence 99999988888877766554
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.2e-23 Score=220.94 Aligned_cols=263 Identities=12% Similarity=0.119 Sum_probs=170.4
Q ss_pred CCeEEEEecCCCC-hhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCCchh--HHHhhchHHHHHHHh
Q 002128 34 EKIVVTVRLRPLN-KREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSCLTE--TVYEEGVKNVALSAL 110 (962)
Q Consensus 34 e~IrV~VRVRPl~-~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~asQe--eVy~~~v~plV~svl 110 (962)
|.|||+|||||.. + ....+...+.. |.... ..+.|.||+||++.+.|+ +||++ +.++|++++
T Consensus 24 GnIRVFcrvrp~~~p------~~~~v~y~~~~-I~v~~-------~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scL 88 (298)
T 2o0a_A 24 GTMRCYAYVMEQNLP------ENLLFDYENGV-ITQGL-------SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCL 88 (298)
T ss_dssp TCCEEEEEECGGGSC------TTEEEETTTTE-EEETT-------TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHH
T ss_pred CceEEEEEeccccCC------ccceeecCccc-eeecC-------CCceEEeeeEECccccccHHHHHHH-HHHHHHHHH
Confidence 6899999999954 2 12334444433 44322 126899999999999999 99999 999999999
Q ss_pred c-CCceeEEEeccCCCCCcccccCCchHHHHHHHHHHhc-CCCCceEEEeeeEEEe-cccccccccCCC-CCcceeeeCC
Q 002128 111 M-GINATIFAYGQTSSGKTYTMRGITEKAVVDIYNHIMN-TPERDFTIKISGLEIY-NENVRDLLNSES-GRNLKLLDDP 186 (962)
Q Consensus 111 ~-G~N~tIfAYGqTGSGKTyTM~Gii~ral~dLF~~i~~-~~~~~f~V~vS~lEIY-nE~V~DLL~~~~-~~~L~i~ed~ 186 (962)
+ |||+||||||||||||| |+++..+|..... .. ..|.+.+||+||| ||.++|||.... +..+.|.-+.
T Consensus 89 d~GyNvcIfSyGQTGsGKT-------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~ 160 (298)
T 2o0a_A 89 NQKKNFNLISLSTTPHGSL-------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKF 160 (298)
T ss_dssp HTTCCEEEEEECSSCCHHH-------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEEEE
T ss_pred hCCCceEEEEECCCCCCcc-------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecC
Confidence 9 99999999999999999 9999999976533 22 7899999999999 999999996322 2256777778
Q ss_pred CCCeEecCceEEeeCC-HHHHHHHHHHHHHhhhhcccccCCCCCCcceEEEEEEEeecccCCCcceeEEEEEEEEecCCC
Q 002128 187 EKGTVVEKLVEETANN-DQHLRHLISICEAQRQVGETALNDTSSRSHQIIRLSIQSTLRENSDCVRSFVASLNFVDLAGS 265 (962)
Q Consensus 187 ~~g~~V~gLte~~V~s-~ee~~~lL~~g~~~R~~a~T~~N~~SSRSH~IftI~V~s~~~~~~~~~~~~~skL~fVDLAGS 265 (962)
.++.+|.|++.+.|.+ .+++..++..+.. +.+|. +.-.|+.+.+-.....-.+......--++|+.+.-.
T Consensus 161 ~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~~~ 231 (298)
T 2o0a_A 161 EKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNL 231 (298)
T ss_dssp CSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEEEEEEEECSH
T ss_pred CCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCcccccccCCCCceEEEEEEeCCH
Confidence 8999999999999999 8888776622211 11221 223455555533111111111111234667765432
Q ss_pred ccccccccchhhhHhhhhccccHHHHHHHHHHhccCCCCCCccccCChhhhhhhccCCCCCccceeeccCCCCcchHHHH
Q 002128 266 ERASQTHADGARLREGCHINLSLMTLTTVIRKLSVGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALSHFEQSR 345 (962)
Q Consensus 266 ER~~kt~~~G~rlkE~~~INkSL~aLg~VI~aLs~g~k~~hIPYRDSKLTrLLqdsLGGNskT~mI~tISPs~~~~eETl 345 (962)
. +...|.+. +..+ -+-.|+++-+|+.-|- ..+-++++++.-.. +.-
T Consensus 232 ~--------------------~~~~l~~~---~~~~------~~~~spi~~il~~ll~-~tks~~~~~l~~~~----~~~ 277 (298)
T 2o0a_A 232 K--------------------SIEQFDKS---IFKK------ESCETPIALVLKKLIS-DTKSFFLLNLNDSK----NVN 277 (298)
T ss_dssp H--------------------HHHHHHHH---HHTC-------CCCSHHHHHHHHHHH-HSBCEEEEEECCGG----GHH
T ss_pred H--------------------HHHHHHhh---cccc------cccCCcHHHHHHHHHh-cCcceEEEEecCCC----chh
Confidence 2 12233332 2222 2345788888886664 36778999987542 333
Q ss_pred HHHHHHHHhhccccccc
Q 002128 346 NTLFFATRAKEVTNNAQ 362 (962)
Q Consensus 346 sTLrFAsRAk~Ikn~~~ 362 (962)
.-|..+++...+.|...
T Consensus 278 ~lL~~s~~i~~~~~~~~ 294 (298)
T 2o0a_A 278 KLLTISEEVQTQLCKRK 294 (298)
T ss_dssp HHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhhcccCccc
Confidence 47888888887776543
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.90 E-value=0.023 Score=56.03 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=37.8
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
..++||.....+..|+++++. +..++.++--.....++-||++|+|||+.+.
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 346888877666678888865 6666666543334567889999999999974
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.28 E-value=0.071 Score=53.25 Aligned_cols=51 Identities=16% Similarity=0.061 Sum_probs=35.2
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCc-eeEEEeccCCCCCccccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGIN-ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N-~tIfAYGqTGSGKTyTM~ 132 (962)
.++||.+...+..+..+++. +..++...-.+.. ..|+-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 56788766555566677764 5555554433322 678899999999999874
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.40 E-value=0.097 Score=56.97 Aligned_cols=53 Identities=9% Similarity=0.227 Sum_probs=35.5
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCC
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gi 134 (962)
.++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ai 172 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAM 172 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHHHH
Confidence 3677775544435556666 3555665544444567889999999999998654
No 35
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.08 E-value=0.47 Score=50.93 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=30.7
Q ss_pred cceecCCCCchhHHHhhchHHHHHHHhc--CCc--eeEEEeccCCCCCcccc
Q 002128 84 FDKVFGPSCLTETVYEEGVKNVALSALM--GIN--ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 84 FD~VF~~~asQeeVy~~~v~plV~svl~--G~N--~tIfAYGqTGSGKTyTM 131 (962)
||.+|+..---..+.+..+..++.+.+. |.. ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4444443333455666666666666554 222 35788999999999976
No 36
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.38 E-value=6.5 Score=43.22 Aligned_cols=119 Identities=11% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCeEEEEecCCCChhhhhcCCceEEEecCCcEEEEcCCCCCCCCCCceeecceecCCCC-chhHHHhhchHHHHHHHh-c
Q 002128 34 EKIVVTVRLRPLNKREQLAKDQVAWDCVDDHTIVYKPQPHERVAQPSSFSFDKVFGPSC-LTETVYEEGVKNVALSAL-M 111 (962)
Q Consensus 34 e~IrV~VRVRPl~~~E~~~~~~~~v~~~~~~tiv~~~~~~~~~~~~~~F~FD~VF~~~a-sQeeVy~~~v~plV~svl-~ 111 (962)
|.||+|+=+-+-. ..+...++. .+++|. . . .....|.|++|++... +-.+++..-.+..++.++ .
T Consensus 59 G~IRcFAYi~~~~-----~p~~~~idY-~~~~It-~-~-----~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~ 125 (333)
T 4etp_B 59 GTMRVYAYVMEQN-----LPENLLFDY-ENGVIT-Q-G-----LSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQ 125 (333)
T ss_dssp TCCEEEEEECCSS-----CCSSCEEET-TTTEEE-C--------CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHT
T ss_pred CcEEEEEEECccc-----CCccEEEec-ccceEe-e-c-----CCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHcc
Confidence 5688888776621 122233333 334553 1 1 1247999999997665 234444445899999999 8
Q ss_pred CCceeEEEeccCCCCCcccccCCchHHHHHHHHHHhcC---CCCceEEEeeeEEEeccc-ccccccCC
Q 002128 112 GINATIFAYGQTSSGKTYTMRGITEKAVVDIYNHIMNT---PERDFTIKISGLEIYNEN-VRDLLNSE 175 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM~Gii~ral~dLF~~i~~~---~~~~f~V~vS~lEIYnE~-V~DLL~~~ 175 (962)
+.|+.||..|+.- .+.....++..+... -...|.+.+-|+.+-++. ..|||.+.
T Consensus 126 ~~NfslIsis~~~----------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 126 KKNFNLISLSTTP----------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp TCCEEEEEEESSC----------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred CCCeeEEEecCCC----------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 9999999999752 223444555555544 135788999998887766 69999875
No 37
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.14 E-value=0.64 Score=44.42 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=23.5
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
+..++..+..+....|+-||++|+|||+.+..
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~ 62 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 33445555556667789999999999998743
No 38
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.37 E-value=3.7 Score=35.79 Aligned_cols=45 Identities=27% Similarity=0.463 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 373 VKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDE 423 (962)
Q Consensus 373 i~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~ 423 (962)
+.+||..+.....+|+ .++..|..++.++.+...++..++++++.
T Consensus 21 i~eLq~~L~~K~eELr------~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELR------QRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566665554444433 34444444444444444444444444433
No 39
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.86 E-value=0.63 Score=48.43 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=33.4
Q ss_pred ceeecceecCCCCchhHHHhhchHHHH-----HHHhcCCceeEEEeccCCCCCccccc
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVA-----LSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV-----~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
..+.||.+.+.+...+.+.+. +..+. ..+-......|+-||++|+|||+.+.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 357899999887766666543 22211 11111234458899999999999874
No 40
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.80 E-value=0.57 Score=48.82 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=22.5
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.|+||.+.+.+..-..+.+. +..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ-----VSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH-----HHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH-----HHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 47889887654433333322 223222 3467888999999999876
No 41
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.28 E-value=3.8 Score=46.86 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=44.9
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHH-Hhc--CC--ceeEEEeccCCCCCcccc-----------------------c
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALS-ALM--GI--NATIFAYGQTSSGKTYTM-----------------------R 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~s-vl~--G~--N~tIfAYGqTGSGKTyTM-----------------------~ 132 (962)
.-+||.|-+-+.--+++.+.+..|+... .+. |. .-.|+-||+.|+|||+.. .
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSC
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcccc
Confidence 3577777776655555555544444321 222 32 345999999999999887 2
Q ss_pred CCchHHHHHHHHHHhcC
Q 002128 133 GITEKAVVDIYNHIMNT 149 (962)
Q Consensus 133 Gii~ral~dLF~~i~~~ 149 (962)
|-.+..+.++|......
T Consensus 248 Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 248 GEGPRMVRDVFRLAREN 264 (428)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHc
Confidence 44567788888877654
No 42
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.64 E-value=1 Score=51.65 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=36.0
Q ss_pred eeecceecCCCCchhHHHhhchHHHHH-HHhc--C--CceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVAL-SALM--G--INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~-svl~--G--~N~tIfAYGqTGSGKTyTM 131 (962)
.-+||.|-+-+.--+++.+.++.|+.. ..+. | ..-.|+-||+.|+|||++.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 457888888776666777766666642 2222 3 3356899999999999887
No 43
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.29 E-value=0.71 Score=49.67 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=29.4
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..|.||.+++.+ .+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 468899987653 33222 233344444456999999999999976
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=77.77 E-value=0.76 Score=44.03 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=23.0
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
+..++..+..+....|+-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 3344555555667778999999999999874
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=77.70 E-value=1 Score=45.19 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=28.2
Q ss_pred eecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 82 FSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 82 F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
++||.++.. ..++.++.. +..+ +..+....|+-||++|+|||+.+..
T Consensus 25 ~~~~~~~~~-~~~~~~~~~-l~~~---~~~~~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA-LKSA---ASGDGVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp CSTTTSCC---CCHHHHHH-HHHH---HHTCSCSEEEEECSTTSSHHHHHHH
T ss_pred CChhhccCC-CCCHHHHHH-HHHH---HhCCCCCeEEEECCCCCCHHHHHHH
Confidence 567766552 223444443 2222 2233556788999999999998743
No 46
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=77.21 E-value=0.83 Score=47.86 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=32.7
Q ss_pred ceeecceecCCCCchhHHHhhchHHHH-----HHHhcCCceeEEEeccCCCCCccccc
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVA-----LSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV-----~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
..+.||.+.+.+..-+.+.+.+..++. ...--.....|+-||++|+|||+.+.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 357899988766555555444333221 11111334568999999999998763
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=76.89 E-value=0.98 Score=48.55 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=31.1
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
..|+||.++.. ..+...+.. +..++..-- +....++-||++|+|||+.+..
T Consensus 6 ~~~~f~~fv~g-~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 6 PKYTLENFIVG-EGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp TTCCSSSCCCC-TTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHHH
T ss_pred CCCCcccCCCC-CcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHHH
Confidence 46889887632 233444543 444443211 1335688999999999998743
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=75.26 E-value=1.2 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=18.8
Q ss_pred cCCceeEEEeccCCCCCccccc
Q 002128 111 MGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
......|+-||++|+|||+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHH
Confidence 5667789999999999999863
No 49
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=75.15 E-value=1 Score=46.53 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=29.6
Q ss_pred ceeecceecCCCCchhHHHhhchHHHH-HHHhcCC----ceeEEEeccCCCCCccccc
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVA-LSALMGI----NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV-~svl~G~----N~tIfAYGqTGSGKTyTM~ 132 (962)
..++||.|.+.+....++-+- ...+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 357899988765433333221 11110 0122222 2238999999999999874
No 50
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=75.11 E-value=0.92 Score=48.67 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=31.7
Q ss_pred eeecceecCCCCchhHHHhhchHHHH-----HHHhcCCceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVA-----LSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV-----~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.++||.|.+.+..-+.+.+.+..|+. ..+--.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 46788888766555555554333321 1111123456899999999999886
No 51
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.78 E-value=4.9 Score=45.69 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=47.9
Q ss_pred eecceecCCCCchhHHHhhchHHHHHH-Hhc--CC--ceeEEEeccCCCCCcccc-----------------------cC
Q 002128 82 FSFDKVFGPSCLTETVYEEGVKNVALS-ALM--GI--NATIFAYGQTSSGKTYTM-----------------------RG 133 (962)
Q Consensus 82 F~FD~VF~~~asQeeVy~~~v~plV~s-vl~--G~--N~tIfAYGqTGSGKTyTM-----------------------~G 133 (962)
-+||.|-+-+.--+++-+.+.-|+... ++. |. .-.|+-||+.|+|||... .|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 567888777666666666666665432 232 33 356999999999999987 24
Q ss_pred CchHHHHHHHHHHhcCC
Q 002128 134 ITEKAVVDIYNHIMNTP 150 (962)
Q Consensus 134 ii~ral~dLF~~i~~~~ 150 (962)
-.++.+..+|.......
T Consensus 225 ese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHA 241 (405)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhC
Confidence 45678889998876553
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.50 E-value=11 Score=36.59 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 372 LVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 372 li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
.+..+.+|+..|+.+|. ....++..+.+++++|+++++.++.++.+|+..+.
T Consensus 83 ~l~~~~kE~~~lK~el~------~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELI------AAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666665553 34455556666666666666666666666655544
No 53
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=73.25 E-value=0.94 Score=49.87 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=20.3
Q ss_pred HHhcCCceeEEEeccCCCCCcccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+-.|...+|+-||++|+|||.++
T Consensus 39 ~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 39 SLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HhcCCCCCeEEEECCCCCCHHHHH
Confidence 334678889999999999999986
No 54
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.41 E-value=8 Score=44.40 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=44.8
Q ss_pred eeecceecCCCCchhHHHhhchHHHHH-HHhc--C--CceeEEEeccCCCCCcccc-----------------------c
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVAL-SALM--G--INATIFAYGQTSSGKTYTM-----------------------R 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~-svl~--G--~N~tIfAYGqTGSGKTyTM-----------------------~ 132 (962)
.-+||.|=+-+.--+++.+.+..|+.. ..+. | .--.|+-||+.|+|||... .
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSS
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccC
Confidence 346677666555445555554444421 1222 3 3357999999999999876 2
Q ss_pred CCchHHHHHHHHHHhcCC
Q 002128 133 GITEKAVVDIYNHIMNTP 150 (962)
Q Consensus 133 Gii~ral~dLF~~i~~~~ 150 (962)
|-.++.+..+|.......
T Consensus 258 Gesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 455678889998876553
No 55
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.18 E-value=7.2 Score=44.71 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=44.8
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHH-Hhc--CC--ceeEEEeccCCCCCccccc-----------------------
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALS-ALM--GI--NATIFAYGQTSSGKTYTMR----------------------- 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~s-vl~--G~--N~tIfAYGqTGSGKTyTM~----------------------- 132 (962)
..+||.|-+-+.--+++.+.+..|+... .+. |. .-.|+-||+.|+|||++..
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYI 256 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSS
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccc
Confidence 3567888776655555655555554322 232 32 3569999999999999871
Q ss_pred CCchHHHHHHHHHHhcC
Q 002128 133 GITEKAVVDIYNHIMNT 149 (962)
Q Consensus 133 Gii~ral~dLF~~i~~~ 149 (962)
|-....+..+|......
T Consensus 257 Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 257 GESARIIREMFAYAKEH 273 (437)
T ss_dssp SHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 33456778888776554
No 56
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=71.28 E-value=1.9 Score=41.63 Aligned_cols=44 Identities=23% Similarity=0.415 Sum_probs=26.0
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
..|.||.-+. ..+ .+++.. +..+ .| ..++-||++|+|||+.+..
T Consensus 12 ~~~~~~~f~~-g~n-~~~~~~-l~~~-----~g--~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 12 DYPSFDKFLG-TEN-AELVYV-LRHK-----HG--QFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCCCCCCCCS-CCT-HHHHHH-CCCC-----CC--SEEEEESSSTTTTCHHHHH
T ss_pred CccchhhcCc-Ccc-HHHHHH-HHhc-----CC--CEEEEECCCCCCHHHHHHH
Confidence 3566666443 333 334433 2222 33 3566799999999999744
No 57
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=70.89 E-value=2.3 Score=46.19 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=30.7
Q ss_pred eecceecCCCCchhHHHhhchHHHHH-HHhcCC---ceeEEEeccCCCCCcccc
Q 002128 82 FSFDKVFGPSCLTETVYEEGVKNVAL-SALMGI---NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 82 F~FD~VF~~~asQeeVy~~~v~plV~-svl~G~---N~tIfAYGqTGSGKTyTM 131 (962)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 56888877654444444443333321 233332 246889999999999987
No 58
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=70.14 E-value=2 Score=42.46 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=18.2
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3445667766 567789999999754
No 59
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.01 E-value=1.7 Score=43.59 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEEeccCCCCCccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYT 130 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyT 130 (962)
.+..++.|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3455677876 67788999999987
No 60
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.99 E-value=13 Score=32.39 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 380 VARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 380 i~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
+..|+..|. .++.+|++.+..|+++..++++...++.+|+.++...+
T Consensus 21 i~eLq~~L~------~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQ------EKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555553 56777888888888888888888888888888776654
No 61
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=69.72 E-value=1.2 Score=46.89 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=31.6
Q ss_pred eeecceecCCCCchhHHHhhchHHHHH-HHhcC---CceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVAL-SALMG---INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~-svl~G---~N~tIfAYGqTGSGKTyTM 131 (962)
...||.+.+.+..-+.+.+.+..++.. .++.| ....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 467888887654444444443333321 11222 3457899999999999876
No 62
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=69.48 E-value=1.1 Score=48.28 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=17.7
Q ss_pred CCceeEEEeccCCCCCccccc
Q 002128 112 GINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM~ 132 (962)
+....++-||++|+|||+.+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHH
Confidence 455679999999999999874
No 63
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=69.05 E-value=1.8 Score=49.31 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=30.3
Q ss_pred CceeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 79 PSSFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 79 ~~~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
...|+||...... ++...+.. +..++.. .|....++-||++|+|||+.+..
T Consensus 99 ~~~~tfd~fv~g~-~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 99 NPDYTFENFVVGP-GNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQS 149 (440)
T ss_dssp CTTCSGGGCCCCT-TTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHHH
T ss_pred CCCCChhhcCCCC-chHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHHH
Confidence 3568998755222 23334432 3333332 23134688999999999999843
No 64
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=68.73 E-value=2 Score=49.80 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhhhc
Q 002128 395 EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTSNPLDPSVKKCLS 447 (962)
Q Consensus 395 ~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~~~l~~~l~~~~~ 447 (962)
+.+.+|+.|+.+|..-...+..||.-|++++.+|+.+.. .++.+++.|-.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv---DIdiqirsCKg 163 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV---DIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccc
Confidence 334455566666655556666666666666666555432 24466777763
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=68.70 E-value=2 Score=42.44 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.|.| ++..++||||||.+.
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHHH
Confidence 445667766 567789999999874
No 66
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=68.14 E-value=2.1 Score=46.40 Aligned_cols=47 Identities=19% Similarity=0.108 Sum_probs=31.3
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCce--eEEEeccCCCCCccccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINA--TIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~--tIfAYGqTGSGKTyTM~ 132 (962)
.+.||.+.+. +.+... +..++..+..|... .++-||++|+|||+...
T Consensus 40 ~~~~~~ivG~----~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEESC----HHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccCh----HHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 4567776654 344332 44455555566654 78999999999999873
No 67
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=68.11 E-value=2 Score=41.97 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=17.0
Q ss_pred cCCceeEEEeccCCCCCccccc
Q 002128 111 MGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.+....++-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3433459999999999999863
No 68
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=68.06 E-value=1.2 Score=49.17 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=31.1
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHH----hcCCceeEEEeccCCCCCccccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSA----LMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~sv----l~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
...||.+.+.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+.+.
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHH
Confidence 45678777654433444443333222111 23445679999999999998873
No 69
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=67.36 E-value=2.5 Score=45.60 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=30.8
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHH-HhcCC---ceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALS-ALMGI---NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~s-vl~G~---N~tIfAYGqTGSGKTyTM 131 (962)
...||.|.+.+.--+.+.+.+..|+... .+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3568888775544444444433332211 12222 346899999999999987
No 70
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=66.98 E-value=0.97 Score=47.62 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=29.4
Q ss_pred ceeecceecCCCCchhHHHhhchHHHH-HHHhcCC----ceeEEEeccCCCCCccccc
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVA-LSALMGI----NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV-~svl~G~----N~tIfAYGqTGSGKTyTM~ 132 (962)
..++||.|.+.+....++.+- +..+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 357888887765433333221 11110 0122222 2238999999999999873
No 71
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.74 E-value=10 Score=36.06 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 369 DKQLVKHLQKEVARLEAELRTPDPS-----REKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 369 ~~~li~~LqkEi~~Le~eL~~~~~~-----~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
-+.+|.+|+.||.+|+.++.....- ......|..|+.++++-+..++.+..+.+.|+..+....
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999988543110 012233445555555555555555566666776666543
No 72
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=66.02 E-value=3.5 Score=45.44 Aligned_cols=51 Identities=24% Similarity=0.403 Sum_probs=31.4
Q ss_pred eeecceecCCCCchhHHHhhchHHHHH-HHhcC---CceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVAL-SALMG---INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~-svl~G---~N~tIfAYGqTGSGKTyTM 131 (962)
...||.|.+.+..-+.+.+.+..|+-. .++.+ ....|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 467888887665544555444333221 12222 1235888999999999987
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=65.64 E-value=2.4 Score=43.30 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=19.7
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..+..++.|.+ ++..++||||||.+.
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34455678877 577889999999873
No 74
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=65.23 E-value=1.3 Score=45.74 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=29.6
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHh-----c----CCceeEEEeccCCCCCccccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSAL-----M----GINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl-----~----G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.+.||.+.+.+..-+.+.+ ++..+. . .....|+-||++|+|||+.+.
T Consensus 8 ~~~~~~i~G~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAE-----LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHH-----HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHH-----HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHH
Confidence 5678888876544444433 222221 1 234468999999999999873
No 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=64.92 E-value=3.4 Score=44.73 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=24.2
Q ss_pred hhHHHhhchHHHHHHHhcCCc-e--eEEEeccCCCCCcccc
Q 002128 94 TETVYEEGVKNVALSALMGIN-A--TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 94 QeeVy~~~v~plV~svl~G~N-~--tIfAYGqTGSGKTyTM 131 (962)
++...+. +...+..++.|.. . +++-||++|+|||+++
T Consensus 22 r~~~~~~-l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 22 REQQLQQ-LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CHHHHHH-HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred hHHHHHH-HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 4444444 3344555555533 3 6889999999999987
No 76
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=64.62 E-value=3.3 Score=45.88 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=30.1
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHH-HHhc---CCceeEEEeccCCCCCcccc
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVAL-SALM---GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~-svl~---G~N~tIfAYGqTGSGKTyTM 131 (962)
..+.||.+.+.+.--+.+.+.+..++.. .++. .-...|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3467888877544333343333322221 0111 22357899999999999987
No 77
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=64.17 E-value=1.6 Score=44.65 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=19.2
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4455677877 677899999999773
No 78
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=63.02 E-value=2.9 Score=42.44 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.| ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 3455677877 566789999999864
No 79
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.87 E-value=3 Score=45.13 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=25.8
Q ss_pred ecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 83 SFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 83 ~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.|+.+++ |+.+.+ .+-..+-.|--..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~----~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVIT----TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHH----HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHH----HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3555664 444443 23333345533337889999999999984
No 80
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.65 E-value=14 Score=36.02 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002128 375 HLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQT 434 (962)
Q Consensus 375 ~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~ 434 (962)
.+++++..|+.++. +.+.++..+..++..++.+.+.+..++++++++++..+..
T Consensus 72 k~~~~~~~L~~~l~------~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 72 KAKKMADSLSLDIE------NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555543 3344444555555555555555555555555555554433
No 81
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=62.57 E-value=4.5 Score=41.37 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=16.7
Q ss_pred CceeEEEeccCCCCCccccc
Q 002128 113 INATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM~ 132 (962)
....|+-||++|+|||+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34568999999999999874
No 82
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.56 E-value=3.6 Score=47.63 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=45.4
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHH-Hhc--C--CceeEEEeccCCCCCcccc-----------------------c
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALS-ALM--G--INATIFAYGQTSSGKTYTM-----------------------R 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~s-vl~--G--~N~tIfAYGqTGSGKTyTM-----------------------~ 132 (962)
.-+||.|-+-+.--+++.+.+..|+... .+. | .--.|+-||+.|+|||++. .
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 3577777766655555555555444321 232 3 3456999999999999876 2
Q ss_pred CCchHHHHHHHHHHhcCC
Q 002128 133 GITEKAVVDIYNHIMNTP 150 (962)
Q Consensus 133 Gii~ral~dLF~~i~~~~ 150 (962)
|-..+.+..+|.......
T Consensus 285 Gesek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKK 302 (467)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 445677888888776543
No 83
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=62.32 E-value=3.3 Score=47.14 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=32.0
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCc--eeEEEeccCCCCCccccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGIN--ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N--~tIfAYGqTGSGKTyTM~ 132 (962)
.|.||.|.+ |+++.+. +..++..+..|.. ..|+-||++|+|||+...
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 466777664 4555544 4456666666654 368889999999999863
No 84
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=61.84 E-value=3.9 Score=43.12 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.5
Q ss_pred CCceeEEEeccCCCCCcccc
Q 002128 112 GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM 131 (962)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33446899999999999986
No 85
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=61.58 E-value=3.3 Score=47.14 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=21.8
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+++..++..-...|.-.|+||||||+||
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3455555555677889999999999998
No 86
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=61.58 E-value=3.1 Score=41.70 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=18.5
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3455667877 566779999999765
No 87
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=60.04 E-value=2.5 Score=44.23 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
++..++.|.| ++..++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 4455667866 678899999999763
No 88
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=59.85 E-value=3.6 Score=41.54 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.|. +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34556688775 66789999999874
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=59.71 E-value=1.8 Score=42.75 Aligned_cols=22 Identities=45% Similarity=0.412 Sum_probs=16.9
Q ss_pred HHhcCCceeEEEeccCCCCCcccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.++.|.+ ++..++||+|||.+.
T Consensus 44 ~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 44 PALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHhcCCC--EEEEcCCCCCHHHHH
Confidence 3456655 567899999999986
No 90
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=59.31 E-value=3.6 Score=42.27 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=17.7
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667876 566689999999764
No 91
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.68 E-value=4 Score=44.23 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=28.6
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcC-CceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMG-INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G-~N~tIfAYGqTGSGKTyTM 131 (962)
.|.++.+++ +++..+. +...+..++.| ....|+-||++|+|||+.+
T Consensus 16 ~~~p~~l~g----r~~~~~~-l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 16 LSVFKEIPF----REDILRD-AAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHCSSCTT----CHHHHHH-HHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHH-HHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 444555444 3444444 33344454444 3457999999999999986
No 92
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=58.47 E-value=3.7 Score=44.08 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=20.3
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.+--++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 455667774455788999999999873
No 93
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=58.30 E-value=3.6 Score=45.78 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=21.2
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+++.+++.--...|.-.|+||||||++|
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 3455555555567888999999999998
No 94
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=57.78 E-value=4.4 Score=44.15 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=20.2
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 34556778887 677899999999874
No 95
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=57.02 E-value=3.8 Score=41.96 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=17.5
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.|.|. +..++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 4456678764 55679999999874
No 96
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=56.61 E-value=4.3 Score=41.20 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=17.8
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.|.| ++..++||||||.+.
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344667877 456779999999873
No 97
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.43 E-value=3 Score=44.81 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=16.9
Q ss_pred CCceeEEEeccCCCCCcccc
Q 002128 112 GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM 131 (962)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44567899999999999887
No 98
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=56.16 E-value=4 Score=41.85 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=18.8
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.++..+..|.+ ++..|+||||||..+
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 44555566654 567899999999765
No 99
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=55.68 E-value=4.6 Score=41.87 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=18.2
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 3445667866 556679999999864
No 100
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=55.55 E-value=5.1 Score=37.90 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=16.8
Q ss_pred ceeEEEeccCCCCCcccccCC
Q 002128 114 NATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~Gi 134 (962)
+..|+-||.+|+|||+....+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGG
T ss_pred CCcEEEECCCCccHHHHHHHH
Confidence 445788999999999987543
No 101
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=55.47 E-value=5.6 Score=42.66 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=28.4
Q ss_pred ecceecCCCCchhHHHhhchHHHHHHHh--cCCceeEEEeccCCCCCccccc
Q 002128 83 SFDKVFGPSCLTETVYEEGVKNVALSAL--MGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 83 ~FD~VF~~~asQeeVy~~~v~plV~svl--~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.||.+.+ ++.+... +...+..+. .+....|+-||++|+|||+...
T Consensus 27 ~~~~iiG----~~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 27 NFDGYIG----QESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp SGGGCCS----CHHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhCC----hHHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 4666554 3444443 334444443 3445679999999999998763
No 102
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=54.25 E-value=5.4 Score=45.66 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=27.0
Q ss_pred CchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 92 CLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 92 asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..|+.+... ...+...+-.|.-..|+-||++|+|||+..
T Consensus 29 vGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 345666642 344555555566578999999999999876
No 103
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=54.01 E-value=6.8 Score=41.46 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=27.3
Q ss_pred eecceecCCCCchhHHHhhchHHHHHHHh--cCCceeEEEeccCCCCCcccc
Q 002128 82 FSFDKVFGPSCLTETVYEEGVKNVALSAL--MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 82 F~FD~VF~~~asQeeVy~~~v~plV~svl--~G~N~tIfAYGqTGSGKTyTM 131 (962)
..|+.+.+.+ .+... +...+..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~~----~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQE----RLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSCH----HHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCHH----HHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 3566666543 33333 333343332 234567888999999999876
No 104
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=53.14 E-value=4.8 Score=46.66 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=29.7
Q ss_pred eecceecCCCCchhHHHhhchHHH-----HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 82 FSFDKVFGPSCLTETVYEEGVKNV-----ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 82 F~FD~VF~~~asQeeVy~~~v~pl-----V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..|+.+.+.+..-+.+.+.+..++ ...+-......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 456666655444445554433321 11111244567999999999999976
No 105
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.99 E-value=4.5 Score=43.32 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
+...+..|....++-||++|+|||+++.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 3444445533348899999999999874
No 106
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=52.63 E-value=5.3 Score=45.12 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=21.7
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..+..++.|.+..++..|+||||||...
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 3455667776677899999999999773
No 107
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=52.52 E-value=3.3 Score=41.58 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=17.5
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..+++|.| ++..++||||||.+.
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345567766 456789999999874
No 108
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=51.94 E-value=5.4 Score=42.25 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=15.9
Q ss_pred CceeEEEeccCCCCCcccc
Q 002128 113 INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM 131 (962)
-...+.-.|+||||||+++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 3456778899999999998
No 109
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=51.28 E-value=5.8 Score=43.11 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=20.5
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 455667775556788899999999874
No 110
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=51.05 E-value=5.5 Score=43.56 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.| ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 3445677877 567789999999764
No 111
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=51.04 E-value=3.2 Score=44.16 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=26.8
Q ss_pred eeecceecCCCCchhHHHhhchHHHHH-HHhcCCc----eeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVAL-SALMGIN----ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~-svl~G~N----~tIfAYGqTGSGKTyTM 131 (962)
..+||.|-+.+.--+.+.+.++.|+-. .++.+++ ..|+-||+.|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 356777766554445555544444322 1233222 23899999999999886
No 112
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=51.00 E-value=3.3 Score=47.17 Aligned_cols=52 Identities=19% Similarity=0.348 Sum_probs=29.5
Q ss_pred eeecceecCCCCchhHHHhhchHHHHH-HHhcC---CceeEEEeccCCCCCccccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVAL-SALMG---INATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~-svl~G---~N~tIfAYGqTGSGKTyTM~ 132 (962)
...||.|.+.+..-+.+.+.+..|+.. .++.| ....|+-||++|+|||+...
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 467888876543333333332222211 12223 23468899999999998863
No 113
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=50.87 E-value=7.4 Score=42.47 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=20.0
Q ss_pred HHHhcC---CceeEEE--eccCCCCCccccc
Q 002128 107 LSALMG---INATIFA--YGQTSSGKTYTMR 132 (962)
Q Consensus 107 ~svl~G---~N~tIfA--YGqTGSGKTyTM~ 132 (962)
..+..| -...++- ||+.|+|||+.+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 555555 4567888 9999999999873
No 114
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=50.73 E-value=5.7 Score=42.70 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|-...++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345566774455678899999999864
No 115
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=50.54 E-value=6 Score=45.30 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=21.6
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccccCC
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~Gi 134 (962)
++..+..+....++-||++|+|||+...++
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHHH
Confidence 444444455566788999999999988554
No 116
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=50.51 E-value=5.3 Score=46.61 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=20.2
Q ss_pred hHHHHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 102 VKNVALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 102 v~plV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
+..++..+..|.+.++++ ++||||||.++.
T Consensus 187 i~~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 187 INRAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 334444555576655554 899999999963
No 117
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.30 E-value=40 Score=30.04 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDE 423 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~ 423 (962)
|+.|+.++++|+.+...+..+.++
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444444
No 118
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=50.16 E-value=5.6 Score=41.63 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=16.1
Q ss_pred ceeEEEeccCCCCCccccc
Q 002128 114 NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~ 132 (962)
...|+-||++|+|||+...
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4578899999999999874
No 119
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=49.28 E-value=5.9 Score=38.87 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.4
Q ss_pred eeEEEeccCCCCCccccc
Q 002128 115 ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~ 132 (962)
..++-||++|+|||+.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998763
No 120
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=48.70 E-value=6.4 Score=45.91 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=16.9
Q ss_pred HhcCCceeEEEeccCCCCCcccc
Q 002128 109 ALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+-.|.+ |.-.|+||||||+||
T Consensus 257 v~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 257 IEHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HHTTCC--EEEEESTTSSHHHHH
T ss_pred HhCCCE--EEEECCCCCCHHHHH
Confidence 346766 567899999999998
No 121
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=48.08 E-value=5.1 Score=37.96 Aligned_cols=20 Identities=15% Similarity=0.456 Sum_probs=16.7
Q ss_pred CCceeEEEeccCCCCCcccc
Q 002128 112 GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM 131 (962)
..+..|+-||.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566899999999999876
No 122
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=47.78 E-value=6.7 Score=40.51 Aligned_cols=22 Identities=27% Similarity=0.045 Sum_probs=16.8
Q ss_pred HHhcCCceeEEEeccCCCCCcccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.++.+.+ ++.+|+||+|||+..
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHH
Confidence 4556655 667789999999986
No 123
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=47.65 E-value=6.8 Score=41.22 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.2
Q ss_pred cCCceeEEEeccCCCCCccccc
Q 002128 111 MGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.|....++-||++|+|||++..
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4544448999999999999874
No 124
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.52 E-value=6.9 Score=41.11 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=17.5
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 344567766 556789999999865
No 125
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=47.39 E-value=5.5 Score=41.91 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=15.4
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..|+-||++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999876
No 126
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=47.11 E-value=6.7 Score=42.61 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=18.3
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 3445567776 567789999999764
No 127
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.72 E-value=33 Score=38.43 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCchhhhhhhcc
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTSNPLDPSVKKCLSY 448 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~~~l~~~l~~~~~~ 448 (962)
....|+..|..|++.++..-..|.-|+..|.++....+.||.+++.|...
T Consensus 114 ~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~ 163 (390)
T 1deq_A 114 INEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRS 163 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567777777777777555567777777777777777888889988853
No 128
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=46.02 E-value=8.7 Score=41.27 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=24.1
Q ss_pred hHHHHHHHhcCC---ceeEEEeccCCCCCccccc
Q 002128 102 VKNVALSALMGI---NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 102 v~plV~svl~G~---N~tIfAYGqTGSGKTyTM~ 132 (962)
+...+..++.|. --||+-||+.|+|||+...
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 344577788887 3479999999999998763
No 129
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=45.52 E-value=7.7 Score=42.33 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=17.9
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.|.|. +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 4456678774 56789999999764
No 130
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=45.42 E-value=14 Score=39.35 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=22.7
Q ss_pred chHHHHHHHhcCC-----ceeEEEeccCCCCCcccc
Q 002128 101 GVKNVALSALMGI-----NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 101 ~v~plV~svl~G~-----N~tIfAYGqTGSGKTyTM 131 (962)
.+..++..++.|+ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4556666666553 346889999999999875
No 131
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=45.14 E-value=6 Score=41.22 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=20.4
Q ss_pred HHHHhcCCc--eeEEEeccCCCCCcccccC
Q 002128 106 ALSALMGIN--ATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 106 V~svl~G~N--~tIfAYGqTGSGKTyTM~G 133 (962)
+..++.|.- -+++-||+.|+|||+....
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 444555632 4699999999999998744
No 132
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=44.64 E-value=28 Score=28.47 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
.+..|..|+.+|+.+.+.+..++++++.++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777888888878777777777664
No 133
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=44.45 E-value=78 Score=28.10 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 371 QLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELR 425 (962)
Q Consensus 371 ~li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~ 425 (962)
..|..|..+++.|+.+|..+.-.......++.+..++.++..+++.+-.+-.+|.
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777778888776653222334566677777777777777666665553
No 134
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=44.25 E-value=6.8 Score=43.64 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=19.7
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
++..+.-.-...|.-.|+||||||+++
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 344443334557888999999999998
No 135
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=43.97 E-value=11 Score=40.12 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.5
Q ss_pred ceeEEEeccCCCCCccccc
Q 002128 114 NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~ 132 (962)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888999999999873
No 136
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=43.21 E-value=39 Score=25.50 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
+.||+..+++|......++.++..|+..+++.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 56789999999999999999999998877653
No 137
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=42.26 E-value=6.5 Score=41.18 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=17.1
Q ss_pred cCCceeEEEeccCCCCCccccc
Q 002128 111 MGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.|....++-||+.|+|||++..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHH
Confidence 3544448999999999999863
No 138
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=41.95 E-value=9.2 Score=43.97 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=19.6
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.|.+..++..++||||||.+.
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHH
Confidence 45566774456778899999999874
No 139
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=41.72 E-value=6.5 Score=42.15 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=17.7
Q ss_pred HHHhcCCceeEEEeccCCCCCccccc
Q 002128 107 LSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 107 ~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
..+..|. .|+-||++|+|||+.+.
T Consensus 41 ~~l~~~~--~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGG--HILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTC--CEEEESCCCHHHHHHHH
T ss_pred HHHHcCC--eEEEECCCCCcHHHHHH
Confidence 3334443 57889999999999874
No 140
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=41.63 E-value=8.7 Score=42.30 Aligned_cols=24 Identities=25% Similarity=0.145 Sum_probs=18.0
Q ss_pred HHHHHhcCCceeEEEeccCCCCCccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYT 130 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyT 130 (962)
.+..++.|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3445667875 57889999999984
No 141
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=41.45 E-value=11 Score=43.31 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=20.9
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.++..++.|-+--+++.++||||||.+.
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 3455667665667788999999999763
No 142
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.27 E-value=81 Score=32.18 Aligned_cols=49 Identities=27% Similarity=0.332 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 368 SDKQLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVD 422 (962)
Q Consensus 368 ~~~~li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~ 422 (962)
.+..+|..|+.|+..|..+|. .++.+|..|+.++..++.+....+.++.
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~------~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLD------TKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 345688999999999998876 5667788888888887777766665544
No 143
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=41.13 E-value=9.9 Score=40.98 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=18.5
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4455677876 556679999999764
No 144
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=40.62 E-value=8.3 Score=45.89 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=18.3
Q ss_pred HHHHHhcCCceeEEEeccCCCCCccccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.|..++..-..+ +-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~~-lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKELA-IIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSEE-EEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCce-EEECCCCCCHHHHHH
Confidence 345555433333 567999999999974
No 145
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.50 E-value=15 Score=39.55 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=15.6
Q ss_pred ceeEEEeccCCCCCcccc
Q 002128 114 NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM 131 (962)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446889999999999987
No 146
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=40.32 E-value=7.3 Score=40.86 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=15.5
Q ss_pred HHhcCCceeEEEeccCCCCCcccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.++.|.++ +..++||||||.+.
T Consensus 124 ~~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 124 EGLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHSEE--EECCCTTSCHHHHH
T ss_pred HHHhcCCe--EEEcCCCCCcHHHH
Confidence 34445444 33899999999987
No 147
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=39.99 E-value=6.5 Score=48.44 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCceeEEEeccCCCCCcccccCCc
Q 002128 103 KNVALSALMGINATIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 103 ~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii 135 (962)
..++..+..+....++-||++|+|||+.+.++.
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHH
Confidence 334444455655567889999999999886643
No 148
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=39.90 E-value=1.2e+02 Score=30.02 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 372 LVKHLQKEVARLEAELRTPDP-SREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 372 li~~LqkEi~~Le~eL~~~~~-~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
.+..|+.++..|+.++..... ..++...++.+..|+..|+-+...++.++..|+++-..+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544332110 014445556666666666666666666555555443333
No 149
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.78 E-value=7.4 Score=41.82 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.4
Q ss_pred EEEeccCCCCCccccc
Q 002128 117 IFAYGQTSSGKTYTMR 132 (962)
Q Consensus 117 IfAYGqTGSGKTyTM~ 132 (962)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999874
No 150
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=39.61 E-value=5.3 Score=44.81 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=18.7
Q ss_pred ceeEEEeccCCCCCcccccCCchHH
Q 002128 114 NATIFAYGQTSSGKTYTMRGITEKA 138 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~Gii~ra 138 (962)
+.-++..|.||||||.++..+++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~ 77 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTG 77 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999999875544433
No 151
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=39.39 E-value=74 Score=29.88 Aligned_cols=34 Identities=12% Similarity=0.396 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
.|..|+.....|.++.....+-++++..+++...
T Consensus 57 ~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ai 90 (111)
T 2v66_B 57 YVRELEQANDDLERAKRATIVSLEDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 152
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=39.31 E-value=26 Score=42.02 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=51.8
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCch-------------HHHHHHHHHHh
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITE-------------KAVVDIYNHIM 147 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~-------------ral~dLF~~i~ 147 (962)
.|..-.-|.|...|..-+.. ++..+-.|... ....|.|||||||+|..++. .....+++.+.
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 46667778899999887765 45565666533 34569999999999954322 23556666554
Q ss_pred cC-CCCceEEEeeeEEEec
Q 002128 148 NT-PERDFTIKISGLEIYN 165 (962)
Q Consensus 148 ~~-~~~~f~V~vS~lEIYn 165 (962)
.- ++..+....||+--|.
T Consensus 79 ~~~~~~~v~~fps~yd~~~ 97 (661)
T 2d7d_A 79 EFFPNNAVEYFVSYYDYYQ 97 (661)
T ss_dssp HHCTTSEEEEECCCEEEEE
T ss_pred HHcCCCcEEEccccccccC
Confidence 43 3445666777755444
No 153
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=39.14 E-value=11 Score=42.17 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.| +++.++||||||.+.
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHHH
Confidence 3445678876 567789999999864
No 154
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=38.98 E-value=23 Score=43.73 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=45.2
Q ss_pred eeecceecCCCCchhHHHhhchHHHHH-HHhcCCc----eeEEEeccCCCCCccccc-----------------------
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVAL-SALMGIN----ATIFAYGQTSSGKTYTMR----------------------- 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~-svl~G~N----~tIfAYGqTGSGKTyTM~----------------------- 132 (962)
..+||.|-+-+.--+++.+.+..|+.. .++.++. ..|+-||+.|+|||....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 467888877766666666554445432 2344443 369999999999998761
Q ss_pred CCchHHHHHHHHHHhcC
Q 002128 133 GITEKAVVDIYNHIMNT 149 (962)
Q Consensus 133 Gii~ral~dLF~~i~~~ 149 (962)
|-....+..+|......
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 33445677888776543
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.86 E-value=11 Score=39.40 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=16.9
Q ss_pred cCCceeEEEeccCCCCCccccc
Q 002128 111 MGINATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM~ 132 (962)
.|.-..++-||+.|+|||+...
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4443348899999999998863
No 156
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=38.85 E-value=14 Score=43.59 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=19.7
Q ss_pred HHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 104 NVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+|..++.|.+ +++.++||+|||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 34556778887 567789999999764
No 157
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.59 E-value=1.4e+02 Score=28.22 Aligned_cols=37 Identities=32% Similarity=0.383 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002128 397 DLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQ 433 (962)
Q Consensus 397 e~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~ 433 (962)
..+++.++.||..|+.++..+..+++.||+.......
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3468889999999999999999999999988776653
No 158
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=38.33 E-value=7.3 Score=45.07 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=28.9
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHH-----hcC----CceeEEEeccCCCCCccccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSA-----LMG----INATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~sv-----l~G----~N~tIfAYGqTGSGKTyTM~ 132 (962)
.++|+.|.+.+..-+++. .++..+ +.+ ....|+-||++|+|||+.+.
T Consensus 12 ~~~f~di~G~~~~~~~l~-----e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELK-----EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CCCGGGCCSCHHHHHHHH-----HHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHH-----HHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 567888877654333333 233322 111 23458999999999999863
No 159
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=38.14 E-value=12 Score=42.42 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=18.4
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3445567877 566789999999774
No 160
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.75 E-value=44 Score=38.81 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 002128 370 KQLVKHLQKEVARLEAELR 388 (962)
Q Consensus 370 ~~li~~LqkEi~~Le~eL~ 388 (962)
.+.+..+++++...+..+.
T Consensus 476 ~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 476 EQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhcC
Confidence 4444555555555544444
No 161
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=37.35 E-value=14 Score=40.05 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.4
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34677999999999987
No 162
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=36.76 E-value=7.3 Score=41.98 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=18.4
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455667766 466789999999874
No 163
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=36.45 E-value=13 Score=37.47 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=21.5
Q ss_pred HHHHHHHhcC-C--ceeEEEeccCCCCCcccc
Q 002128 103 KNVALSALMG-I--NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 103 ~plV~svl~G-~--N~tIfAYGqTGSGKTyTM 131 (962)
-+-++.++.| + ...+.-+|++|+|||+.+
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 3556777754 3 346778999999999987
No 164
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=36.41 E-value=1.4e+02 Score=27.11 Aligned_cols=23 Identities=13% Similarity=-0.075 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 002128 370 KQLVKHLQKEVARLEAELRTPDP 392 (962)
Q Consensus 370 ~~li~~LqkEi~~Le~eL~~~~~ 392 (962)
..-.++|++|+..|+.|+.....
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSa 44 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISA 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHHHHhccch
Confidence 44568899999999999987653
No 165
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=36.22 E-value=11 Score=39.81 Aligned_cols=25 Identities=32% Similarity=0.214 Sum_probs=17.1
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 344556632 3567789999999874
No 166
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=36.08 E-value=10 Score=45.01 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.0
Q ss_pred ceeEEEeccCCCCCcccccCC
Q 002128 114 NATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~Gi 134 (962)
+..++..|++|||||+|+..+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~l 184 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKL 184 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 346788999999999998543
No 167
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=35.98 E-value=14 Score=41.79 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=17.6
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 345567876 456789999999774
No 168
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=35.97 E-value=20 Score=37.06 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=19.9
Q ss_pred hHHHHHHHhcCCc-----eeEEEeccCCCCCcccc
Q 002128 102 VKNVALSALMGIN-----ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 102 v~plV~svl~G~N-----~tIfAYGqTGSGKTyTM 131 (962)
...++..++.|+. ..|+-.|+.|||||+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 3344445554432 46889999999999854
No 169
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=35.44 E-value=6.4 Score=45.86 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=27.9
Q ss_pred eeecceecCCCCchhHHHhhchHHHHHHH-----hcCC----ceeEEEeccCCCCCcccc
Q 002128 81 SFSFDKVFGPSCLTETVYEEGVKNVALSA-----LMGI----NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 81 ~F~FD~VF~~~asQeeVy~~~v~plV~sv-----l~G~----N~tIfAYGqTGSGKTyTM 131 (962)
.++||.|.+.+..-.++ ..++..+ +..+ ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l-----~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEEL-----KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHH-----HHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHH-----HHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 46788887654333333 2333322 2222 234899999999999987
No 170
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.17 E-value=47 Score=27.99 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 395 EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 395 ~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
-+...+..|+.++++|+.+...+..++..|+..+.
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567888889999999888888888888877664
No 171
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=34.49 E-value=8.8 Score=43.52 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=18.5
Q ss_pred HHHHhcCCceeEEEeccCCCCCccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYT 130 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyT 130 (962)
+..++.|.+. ++..|+||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4556778665 56779999999997
No 172
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=34.11 E-value=12 Score=40.22 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=16.9
Q ss_pred CCceeEEEeccCCCCCcccc
Q 002128 112 GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM 131 (962)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678899999999999875
No 173
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=33.86 E-value=17 Score=42.22 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=19.8
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
++..++.|-+--+++.++||||||.+.
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 455566555556788899999999863
No 174
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=33.81 E-value=20 Score=35.86 Aligned_cols=29 Identities=17% Similarity=-0.001 Sum_probs=18.9
Q ss_pred HHHHHHHhc--CCceeEEEeccCCCCCcccc
Q 002128 103 KNVALSALM--GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 103 ~plV~svl~--G~N~tIfAYGqTGSGKTyTM 131 (962)
..+++.+.. +-...|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 334444432 33445667799999999876
No 175
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=33.73 E-value=17 Score=37.07 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=17.7
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+++++-.|--. .-.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~~--~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIV--FGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEE--EEECCTTSSTTHHH
T ss_pred HHHhccCCCEE--EEECCCCCCHHHHH
Confidence 44455555544 44799999999987
No 176
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=33.49 E-value=15 Score=41.26 Aligned_cols=23 Identities=26% Similarity=0.003 Sum_probs=17.0
Q ss_pred HHHhcCCceeEEEeccCCCCCcccc
Q 002128 107 LSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 107 ~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
..++.|.+ ++..|+||||||.+.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 34556644 566789999999986
No 177
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=33.33 E-value=54 Score=24.37 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
+.||+..+++|...+..++.++..|+.-++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 457889999999999999999888877654
No 178
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=33.04 E-value=15 Score=43.37 Aligned_cols=25 Identities=44% Similarity=0.391 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
++..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3445667776 567789999999875
No 179
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=32.67 E-value=23 Score=42.49 Aligned_cols=79 Identities=20% Similarity=0.198 Sum_probs=47.9
Q ss_pred eecceecCCCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccccCCch-------------HHHHHHHHHHhc
Q 002128 82 FSFDKVFGPSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTMRGITE-------------KAVVDIYNHIMN 148 (962)
Q Consensus 82 F~FD~VF~~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM~Gii~-------------ral~dLF~~i~~ 148 (962)
|.+.. |.|...|..-+.. ++..+-.|... ....|.||||||+||..++. .....+++.+..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHH
Confidence 44444 3788888877664 55566666533 34579999999999954332 234556665544
Q ss_pred C-CCCceEEEeeeEEEecccccccccC
Q 002128 149 T-PERDFTIKISGLEIYNENVRDLLNS 174 (962)
Q Consensus 149 ~-~~~~f~V~vS~lEIYnE~V~DLL~~ 174 (962)
- ++..+....|| ||-..|
T Consensus 76 ~~~~~~V~~fps~--------yd~~~p 94 (664)
T 1c4o_A 76 LFPENAVEYFISY--------YDYYQP 94 (664)
T ss_dssp HCTTSEEEECCCG--------GGTSCC
T ss_pred HCCCCeEEEcCch--------hhccCc
Confidence 3 33345555565 666654
No 180
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=32.51 E-value=11 Score=36.62 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.8
Q ss_pred eeEEEeccCCCCCccccc
Q 002128 115 ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~ 132 (962)
..+.-.|++|||||+.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356678999999999884
No 181
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=32.45 E-value=10 Score=41.52 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=15.7
Q ss_pred ceeEEEeccCCCCCcccc
Q 002128 114 NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM 131 (962)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999876
No 182
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=32.45 E-value=15 Score=36.39 Aligned_cols=29 Identities=24% Similarity=0.114 Sum_probs=19.8
Q ss_pred HHHHHHhc-CC--ceeEEEeccCCCCCccccc
Q 002128 104 NVALSALM-GI--NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 104 plV~svl~-G~--N~tIfAYGqTGSGKTyTM~ 132 (962)
+.++.++. |+ ...+.-+|++|||||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 34556664 43 2346668999999999873
No 183
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=32.38 E-value=67 Score=23.87 Aligned_cols=30 Identities=10% Similarity=0.287 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
+.|++..+++|-.....++.++..|+.-++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 357888999999999999999988877654
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=32.27 E-value=16 Score=35.98 Aligned_cols=29 Identities=31% Similarity=0.242 Sum_probs=22.1
Q ss_pred HHHHHHhc-CCc--eeEEEeccCCCCCccccc
Q 002128 104 NVALSALM-GIN--ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 104 plV~svl~-G~N--~tIfAYGqTGSGKTyTM~ 132 (962)
+-++.++. |+. ..+.-+|.+|+|||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 55677775 554 467889999999998873
No 185
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=31.93 E-value=21 Score=35.47 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=19.7
Q ss_pred HHHHHHHhc---CCceeEEEeccCCCCCcccc
Q 002128 103 KNVALSALM---GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 103 ~plV~svl~---G~N~tIfAYGqTGSGKTyTM 131 (962)
..+++.+.. +-...|.-.|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 334444443 33456788899999999876
No 186
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=31.78 E-value=45 Score=28.84 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 396 KDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 396 ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
++..|..|+.++.+|....+.+..+.+.|+..+...+
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666555555555555555555444
No 187
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.58 E-value=88 Score=34.47 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 373 VKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELR 425 (962)
Q Consensus 373 i~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~ 425 (962)
+..|+.|+.+|+..+. ..+.+|+.|+..++.++.+++.++.++.+|+
T Consensus 7 ~~~~~~~~~~~e~~i~------~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 7 VQKILEEVRILEQIGV------SHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667776665432 3344555555555555444444444444333
No 188
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=31.56 E-value=19 Score=40.78 Aligned_cols=37 Identities=8% Similarity=-0.041 Sum_probs=24.7
Q ss_pred CCCchhHHHhhchHHHHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 90 PSCLTETVYEEGVKNVALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 90 ~~asQeeVy~~~v~plV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..|.+++..+ +..+..|- ..++..|..|||||+++
T Consensus 26 Ln~~Q~~av~~~----~~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 26 LTEGQKNAFNIV----MKAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CCHHHHHHHHHH----HHHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred CCHHHHHHHHHH----HHHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 345677766652 33333333 37888999999999887
No 189
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=31.43 E-value=16 Score=39.78 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=16.9
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.| .++..++||+|||.+.
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHH
Confidence 3455667 4456789999999886
No 190
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.22 E-value=55 Score=24.44 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
+.|++..+++|-.....++.++..|+.-++
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 457889999999999999999988887654
No 191
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=31.16 E-value=17 Score=40.05 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=16.0
Q ss_pred HHhcCCceeEEEeccCCCCCcccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+-.|.+.. -.|+||||||+++
T Consensus 171 ~i~~G~~i~--ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIV--VAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEE--EEESSSSCHHHHH
T ss_pred HHhcCCEEE--EECCCCCCHHHHH
Confidence 344566544 4599999999987
No 192
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=31.15 E-value=22 Score=38.34 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=14.6
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..+.-.|++|||||+++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35677899999999998
No 193
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=31.11 E-value=90 Score=23.62 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
+.||+.++++|......++.++..|+..+++.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 35788999999999999999999888877653
No 194
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=30.94 E-value=16 Score=44.19 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=21.8
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccccCC
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMRGI 134 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~Gi 134 (962)
++..+..+....++-||++|+|||....++
T Consensus 192 l~~~l~~~~~~~vLL~G~pGtGKT~la~~l 221 (758)
T 3pxi_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEGL 221 (758)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHHH
T ss_pred HHHHHhCCCCCCeEEECCCCCCHHHHHHHH
Confidence 444444556666889999999999887543
No 195
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=30.80 E-value=20 Score=35.52 Aligned_cols=28 Identities=32% Similarity=0.303 Sum_probs=20.7
Q ss_pred HHHHHHhc-CCc--eeEEEeccCCCCCcccc
Q 002128 104 NVALSALM-GIN--ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 104 plV~svl~-G~N--~tIfAYGqTGSGKTyTM 131 (962)
+-++.++. |+. ..+.-+|++|||||+.+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45666774 433 45778899999999887
No 196
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.78 E-value=79 Score=36.64 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 405 MEIEELKRQRDVAQSEVDELRRKL 428 (962)
Q Consensus 405 ~eieeLk~~~d~~q~el~~l~~~l 428 (962)
+++++++++.+..+.++.++++++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHH
Confidence 344444444444444444444333
No 197
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=30.73 E-value=11 Score=39.14 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=18.0
Q ss_pred eeEEEeccCCCCCcccccCCchH
Q 002128 115 ATIFAYGQTSSGKTYTMRGITEK 137 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~Gii~r 137 (962)
..++-||.+|+|||..+.|+..+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 56788999999999988664433
No 198
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=30.68 E-value=19 Score=32.17 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=36.4
Q ss_pred hhcCHHHHHHhHhhccccCCCccchhhhhhhccCCCCCchhhhHHHHHHHHHhhcccCCccch
Q 002128 872 SRLTAEERDSLYIKWDVQLDGKHRRLQFVSKLWTDPHDPRHVQESAEIVAKLVGFCEGGNMSK 934 (962)
Q Consensus 872 ~rl~~~Ere~ly~kwgi~l~sK~RrlQl~~~lWt~~~d~~hv~eSa~~Vaklv~~~~~~~~~k 934 (962)
..||.||.+.|..||+|.. -||=.-+++|| ||+.+|+ .+|+..|
T Consensus 21 ~vLs~eE~~~ll~~y~i~~------~qLP~I~~~DP------------va~~~g~-k~GdVvk 64 (84)
T 4ayb_H 21 EVLSIDEAYKILKELGIRP------EQLPWIRASDP------------VARSINA-KPGDIIR 64 (84)
T ss_dssp EECCHHHHHHHHHHHTCCG------GGSCCEESSSH------------HHHHHTC-CTTCEEE
T ss_pred EECCHHHHHHHHHHhcCCH------hHCCeecccCH------------hHHhhCC-CCCCEEE
Confidence 4689999999999999952 38999999998 9999996 4576654
No 199
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=30.64 E-value=14 Score=43.93 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.4
Q ss_pred eeEEEeccCCCCCcccccC
Q 002128 115 ATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~G 133 (962)
..++..|+.|||||+|+..
T Consensus 196 ~~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 3456789999999999854
No 200
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.47 E-value=1.1e+02 Score=25.19 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 396 KDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 396 ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
+...+..|+.+.+.|..+...+..++..|+.++....
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777777777777766554
No 201
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=30.37 E-value=13 Score=34.73 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.4
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999854
No 202
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=29.97 E-value=13 Score=40.66 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.4
Q ss_pred ceeEEEeccCCCCCcccc
Q 002128 114 NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM 131 (962)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999975
No 203
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=29.84 E-value=66 Score=24.05 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQE 430 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~~ 430 (962)
+.|++..+++|-.....++.++..|+..+++
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 4578899999999999999999988887653
No 204
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=29.83 E-value=16 Score=44.15 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=22.5
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccccCCc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~Gii 135 (962)
++..+.......++-||++|+|||+.+.++.
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHHHHH
Confidence 4444445555667889999999999986543
No 205
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.42 E-value=26 Score=42.42 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=14.7
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+-||++|+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999976
No 206
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.39 E-value=54 Score=24.52 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
+.|++...++|-.....++.++..|+.-++
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 457889999999999999999888876553
No 207
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=29.27 E-value=1e+02 Score=23.03 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQE 430 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~~ 430 (962)
+.|++..+++|-..+..++.++..|+.-+++
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 4678899999999999999999988887764
No 208
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.18 E-value=2.3e+02 Score=26.04 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 374 KHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 374 ~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
..++.++.+|+.++. ..+..+..|..++.+-+..+..+..+...+.+++.++.
T Consensus 8 e~lre~l~~le~~~~------~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 8 NQLKEDYNTLKRELS------DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777664 45666777777777777777777777777777776654
No 209
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=29.10 E-value=11 Score=37.65 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=16.2
Q ss_pred eEEEeccCCCCCcccccCCc
Q 002128 116 TIFAYGQTSSGKTYTMRGIT 135 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~Gii 135 (962)
.++-||..|+|||+.+.++.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999999986543
No 210
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=29.02 E-value=22 Score=42.00 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=17.6
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.|.| ++..++||||||...
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Confidence 344567877 467789999999864
No 211
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.96 E-value=31 Score=26.75 Aligned_cols=16 Identities=56% Similarity=0.663 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 002128 372 LVKHLQKEVARLEAEL 387 (962)
Q Consensus 372 li~~LqkEi~~Le~eL 387 (962)
++.+|..|++.|+.+-
T Consensus 4 lvaqlenevaslenen 19 (49)
T 3he5_A 4 LVAQLENEVASLENEN 19 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccc
Confidence 5678888888887754
No 212
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.92 E-value=15 Score=42.37 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=16.0
Q ss_pred ceeEEEeccCCCCCccccc
Q 002128 114 NATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~ 132 (962)
...++-||++|+|||+++.
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578889999999999873
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=28.88 E-value=28 Score=42.00 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=15.4
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999986
No 214
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=28.84 E-value=14 Score=36.19 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.1
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 215
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.74 E-value=1.2e+02 Score=25.20 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 396 KDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 396 ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
+...+..|+.+.+.|..+...++.++..|+.++....
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777666665543
No 216
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=28.74 E-value=14 Score=41.89 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.9
Q ss_pred HhcCCceeEEEeccCCCCCcccc
Q 002128 109 ALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM 131 (962)
++.|++-.|.-.|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999865
No 217
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.71 E-value=1.1e+02 Score=34.65 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 373 VKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 373 i~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
+..++.++..|+.+.. +.+..|++++.++++++.+....+.....|..++++..
T Consensus 5 ~~~~~~~~~~l~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 5 IAALKEKIAALKEKIA------ALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp CHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3556677777776653 45567777888888887777766666566666665553
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=28.68 E-value=28 Score=42.85 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=15.5
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999876
No 219
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=28.60 E-value=16 Score=36.66 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=14.0
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..|.-.|++|||||+++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667899999999876
No 220
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=28.43 E-value=56 Score=24.46 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
+.|++..+++|-.....++.++..|+.-++
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 457889999999999999999988877654
No 221
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=28.38 E-value=13 Score=40.99 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=14.3
Q ss_pred eeEEEeccCCCCCccccc
Q 002128 115 ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~ 132 (962)
.-++..|+||||||+++.
T Consensus 36 ~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 345667999999999873
No 222
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.37 E-value=94 Score=28.08 Aligned_cols=33 Identities=12% Similarity=0.355 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 398 LKIQQMEMEIEELKRQRDVAQSEVDELRRKLQE 430 (962)
Q Consensus 398 ~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~ 430 (962)
..|..+..+|+.+..++..+..+++.+...+..
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444433
No 223
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.97 E-value=1.3e+02 Score=25.16 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 398 LKIQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 398 ~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
..++.++.+.++|+.+.+.+..++..|+.++...
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666555443
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=27.91 E-value=30 Score=37.94 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=15.1
Q ss_pred ceeEEEeccCCCCCcccc
Q 002128 114 NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM 131 (962)
...|.-.|++|||||+|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346777899999999987
No 225
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.85 E-value=99 Score=25.65 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 396 KDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 396 ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
+...+..|+.++++|..+.+.+..++..|+.++..+.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888888888888877766543
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=27.51 E-value=24 Score=43.44 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=35.8
Q ss_pred eeEEEeccCCCCCcccc-----------------------cCCchHHHHHHHHHHhcCCCCceEEEeeeEEEeccccccc
Q 002128 115 ATIFAYGQTSSGKTYTM-----------------------RGITEKAVVDIYNHIMNTPERDFTIKISGLEIYNENVRDL 171 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM-----------------------~Gii~ral~dLF~~i~~~~~~~f~V~vS~lEIYnE~V~DL 171 (962)
..|+-||+.|+|||+.. .|-.+..+..+|........ .=||-+.+--|
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P---------~IifiDEiDsl 582 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAP---------CVLFFDELDSI 582 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCS---------EEEECSCGGGC
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCC---------ceeechhhhHH
Confidence 35889999999999876 26677889999988765433 12566666666
Q ss_pred cc
Q 002128 172 LN 173 (962)
Q Consensus 172 L~ 173 (962)
+.
T Consensus 583 ~~ 584 (806)
T 3cf2_A 583 AK 584 (806)
T ss_dssp C-
T ss_pred hh
Confidence 54
No 227
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=27.48 E-value=15 Score=39.42 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=16.8
Q ss_pred HHhcCCceeEEEeccCCCCCcccc
Q 002128 108 SALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 108 svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.++.|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999876
No 228
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=27.39 E-value=2.2e+02 Score=24.89 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCCCC--h-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 374 KHLQKEVARLEAELRTPDPS--R-------EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 374 ~~LqkEi~~Le~eL~~~~~~--~-------~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
.+|..-...|++.+-..... . ..-..|..|+.+..++..+.+.++.+.+.|++++.
T Consensus 14 ~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 14 AHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666655432111 0 12345777777777777777777777777776664
No 229
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=27.08 E-value=21 Score=35.84 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=18.7
Q ss_pred HHHHhcC-C--ceeEEEeccCCCCCcccc
Q 002128 106 ALSALMG-I--NATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G-~--N~tIfAYGqTGSGKTyTM 131 (962)
++.++.| + ...+.-+|++|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4556543 3 346778999999999986
No 230
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=27.01 E-value=22 Score=43.62 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=19.1
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+....-.|....++..|+||||||...
T Consensus 380 I~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 380 IRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHhhccccCCCcEEEEcCCCCCHHHHH
Confidence 333344455556788999999999875
No 231
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=26.97 E-value=22 Score=41.30 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=19.4
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccccC
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM~G 133 (962)
++..+..|. .|+-||++|+|||+....
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHHHH
Confidence 444445554 578899999999998743
No 232
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=26.94 E-value=16 Score=35.75 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=13.2
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|.-.|++|||||+.+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=26.94 E-value=16 Score=44.96 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=34.4
Q ss_pred ceeecceecCCCCchhHHHhhchHHHHHH-Hhc----CCceeEEEeccCCCCCcccc
Q 002128 80 SSFSFDKVFGPSCLTETVYEEGVKNVALS-ALM----GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 80 ~~F~FD~VF~~~asQeeVy~~~v~plV~s-vl~----G~N~tIfAYGqTGSGKTyTM 131 (962)
..+.||.|.+.+..-+.+.+.+..++... ++. .....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 45788988887776666666544433321 222 22346889999999999876
No 234
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=26.59 E-value=15 Score=35.99 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.7
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999887
No 235
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=26.33 E-value=18 Score=35.05 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.3
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..|.-.|..|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999876
No 236
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=26.18 E-value=27 Score=44.04 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=17.4
Q ss_pred HHHHhcCCceeEEEeccCCCCCccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYT 130 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyT 130 (962)
|..++.|.+ ++..|+||||||.+
T Consensus 48 I~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHcCCC--EEEEECCCCcHHHH
Confidence 445667754 67789999999965
No 237
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=26.04 E-value=12 Score=37.89 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=17.3
Q ss_pred eEEEeccCCCCCcccccCCchH
Q 002128 116 TIFAYGQTSSGKTYTMRGITEK 137 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~Gii~r 137 (962)
.++-||..|||||..+.++.-+
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r 31 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRR 31 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5688999999999988664433
No 238
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=25.46 E-value=33 Score=38.16 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=14.7
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..|.-.|++|||||+|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35778899999999997
No 239
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.40 E-value=67 Score=23.90 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 401 QQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 401 q~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
.|++...++|..+...++.++..|+.-+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 46888899999999999998888776543
No 240
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=25.26 E-value=19 Score=34.15 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.0
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..|+-.|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35788999999999854
No 241
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=25.16 E-value=20 Score=41.97 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.2
Q ss_pred CceeEEEeccCCCCCcccc
Q 002128 113 INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM 131 (962)
.++.++..|..|||||+|+
T Consensus 21 ~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp CSSCEEEEECTTSCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHH
Confidence 3556788899999999998
No 242
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=25.16 E-value=3.9e+02 Score=25.71 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002128 405 MEIEELKRQRDVAQSEVDELRRKLQEDQQ 433 (962)
Q Consensus 405 ~eieeLk~~~d~~q~el~~l~~~l~~~~~ 433 (962)
..+.++++....-|.++..||.++...|.
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~QR 74 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTAQR 74 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 34556666666667777777776666553
No 243
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=25.04 E-value=17 Score=36.32 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=13.6
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.+.-.|++|||||+.+
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999987
No 244
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=24.78 E-value=20 Score=34.57 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=13.4
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+-.|.+|||||+..
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999854
No 245
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=24.41 E-value=18 Score=35.89 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=12.9
Q ss_pred EEEeccCCCCCcccc
Q 002128 117 IFAYGQTSSGKTYTM 131 (962)
Q Consensus 117 IfAYGqTGSGKTyTM 131 (962)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999987
No 246
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.30 E-value=3.1e+02 Score=27.07 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 376 LQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 376 LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
+.+.|..|+.++. ....+|.+++.++++-.+..+.++.++..|+-++...
T Consensus 66 ~~~~I~~L~~El~------~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 66 LLNTLAILQKELK------SKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777764 4556677777776666666666666655555444433
No 247
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=24.30 E-value=18 Score=38.04 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=16.8
Q ss_pred ceeEEEeccCCCCCcccccC
Q 002128 114 NATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 114 N~tIfAYGqTGSGKTyTM~G 133 (962)
...||..|..|+||||+|..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 35689999999999999843
No 248
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.26 E-value=2.5e+02 Score=26.27 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 002128 372 LVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQTSNP 437 (962)
Q Consensus 372 li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~~~~ 437 (962)
.+.+|+.++++++..+.... -...++.-.+.....=+..++.++.+.++|...+...+..++.
T Consensus 46 ~idelk~ei~q~~~~lE~I~---vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 46 LIDKLKEEAEQHKIVMETVP---VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 45566666666655442100 1111222233333333445566666667777766666655443
No 249
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=24.18 E-value=28 Score=42.30 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=18.2
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 3445567876 466789999999774
No 250
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=24.13 E-value=20 Score=38.05 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.7
Q ss_pred CceeEEEeccCCCCCcccc
Q 002128 113 INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM 131 (962)
|+-+|...|++|+|||+.|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3456778899999999887
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=23.99 E-value=21 Score=34.09 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.5
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999875
No 252
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.95 E-value=3.8e+02 Score=26.24 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 377 QKEVARLEAELRTPDPSR-EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 377 qkEi~~Le~eL~~~~~~~-~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
.+.|..|-+.|-..+.+. +....|+.|+.|.++..+++..+-.+-+.+.+++++.-
T Consensus 70 akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l 126 (151)
T 1yke_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLI 126 (151)
T ss_dssp HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888887666443 35567888999998888888888777777777776654
No 253
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.88 E-value=1.2e+02 Score=24.74 Aligned_cols=12 Identities=8% Similarity=0.205 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 002128 408 EELKRQRDVAQS 419 (962)
Q Consensus 408 eeLk~~~d~~q~ 419 (962)
++|+.+.+++++
T Consensus 36 ~~L~~~~~el~~ 47 (53)
T 2yy0_A 36 EAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 254
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=23.81 E-value=21 Score=43.82 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.1
Q ss_pred eEEEeccCCCCCcccccC
Q 002128 116 TIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~G 133 (962)
.++..|+.|||||+|+..
T Consensus 373 ~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 457799999999999854
No 255
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=23.77 E-value=24 Score=35.66 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=9.2
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|.-.|++|||||+++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999887
No 256
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=23.77 E-value=22 Score=40.33 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=15.6
Q ss_pred HhcCCceeEEEeccCCCCCcccc
Q 002128 109 ALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM 131 (962)
++.|.+ ++..|+||||||.+.
T Consensus 125 ~~~~~~--~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 125 GLVNRR--RILNLPTSAGRSLIQ 145 (510)
T ss_dssp HHHHSE--EEEECCSTTTHHHHH
T ss_pred HHhcCC--cEEEeCCCCCHHHHH
Confidence 344544 466799999999987
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=23.73 E-value=20 Score=35.06 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.4
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999876
No 258
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=23.72 E-value=20 Score=36.12 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.0
Q ss_pred eEEEeccCCCCCccccc
Q 002128 116 TIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~ 132 (962)
.+.-.|++|||||+.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999999884
No 259
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=23.66 E-value=21 Score=38.64 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.1
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35566799999999997
No 260
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.62 E-value=91 Score=23.43 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDE 423 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~ 423 (962)
+++..+++|++|+++...++.++.-
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 4556677888888888887777643
No 261
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=23.58 E-value=28 Score=39.17 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=13.8
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999985
No 262
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=23.29 E-value=28 Score=43.34 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=17.9
Q ss_pred HHHHhcCCceeEEEeccCCCCCcccc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 344567877 456789999999875
No 263
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=23.15 E-value=23 Score=43.55 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.1
Q ss_pred eEEEeccCCCCCcccccC
Q 002128 116 TIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~G 133 (962)
.++..|+.|||||+|+..
T Consensus 377 ~~lI~GppGTGKT~~i~~ 394 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSAT 394 (802)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 457799999999999854
No 264
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=23.14 E-value=21 Score=34.37 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=14.0
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+..|..|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 5788999999999865
No 265
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.93 E-value=4.5e+02 Score=25.02 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 378 KEVARLEAELRTPDPSR-EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 378 kEi~~Le~eL~~~~~~~-~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
+.|..|-..|-..+.+. +....|+.|+.|.++..+++..+-.+-+.+..++++.-
T Consensus 71 kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 126 (132)
T 1ykh_B 71 RQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 126 (132)
T ss_dssp HHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777666443 35567888999988888888888777777777766543
No 266
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=22.86 E-value=18 Score=41.93 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=18.1
Q ss_pred HHHHHhcCCceeEEEeccCCCCCcccc
Q 002128 105 VALSALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 105 lV~svl~G~N~tIfAYGqTGSGKTyTM 131 (962)
++..++.|.++ +..++||||||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 44556788765 55679999999754
No 267
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=22.80 E-value=36 Score=41.24 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.7
Q ss_pred cCCceeEEEeccCCCCCcccc
Q 002128 111 MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+.|-||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999885
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=22.75 E-value=21 Score=34.71 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=13.5
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566799999999987
No 269
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=22.00 E-value=21 Score=39.04 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=15.7
Q ss_pred HhcCCceeEEEeccCCCCCcccc
Q 002128 109 ALMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 109 vl~G~N~tIfAYGqTGSGKTyTM 131 (962)
+-.|.+ +.-.|+||||||+++
T Consensus 168 i~~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCC--EEEEESTTSCHHHHH
T ss_pred ccCCCE--EEEECCCCCCHHHHH
Confidence 345654 455699999999987
No 270
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=21.81 E-value=30 Score=36.39 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=15.3
Q ss_pred eeEEEeccCCCCCcccc
Q 002128 115 ATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM 131 (962)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57888999999999887
No 271
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.74 E-value=1.9e+02 Score=25.30 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQQT 434 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~~~ 434 (962)
++.-.+..|++|....-..+.+++.|++.+....+.
T Consensus 22 klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 22 RLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666666666666655544
No 272
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=21.72 E-value=22 Score=38.23 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=14.2
Q ss_pred eEEEeccCCCCCccccc
Q 002128 116 TIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM~ 132 (962)
.|.-.|++|+|||+|+.
T Consensus 107 vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999983
No 273
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=21.68 E-value=60 Score=34.84 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=13.5
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|...|.+|+|||+++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999997
No 274
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=21.63 E-value=23 Score=35.33 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=12.9
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.+.-.|++|||||+++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445699999999987
No 275
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=21.45 E-value=32 Score=38.98 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=13.2
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
-++..|+||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999983
No 276
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=21.43 E-value=40 Score=41.35 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=19.7
Q ss_pred cCCceeEEEeccCCCCCcccc
Q 002128 111 MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+.|-||+.-|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999885
No 277
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=21.33 E-value=4.1e+02 Score=23.10 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 374 KHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 374 ~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
..+..-+..|+.-+-.......+-.-+...-.-|..|+.+.+.+..+.+.|+..+++.+
T Consensus 19 ~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 19 SSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556667777777654444444444444455566677777777777777777776654
No 278
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=21.28 E-value=32 Score=33.95 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=15.2
Q ss_pred CceeEEEeccCCCCCcccc
Q 002128 113 INATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 113 ~N~tIfAYGqTGSGKTyTM 131 (962)
-...|.-.|.+|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456777899999999876
No 279
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=21.24 E-value=31 Score=38.98 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=15.5
Q ss_pred hcCCceeEEEeccCCCCCcccc
Q 002128 110 LMGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 110 l~G~N~tIfAYGqTGSGKTyTM 131 (962)
+.|.| ++..|+||||||...
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 45555 567889999999984
No 280
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=21.09 E-value=32 Score=40.55 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=15.6
Q ss_pred eeEEEeccCCCCCcccccC
Q 002128 115 ATIFAYGQTSSGKTYTMRG 133 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~G 133 (962)
..++-.|..|||||+++..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~ 223 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKA 223 (574)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 4567789999999999744
No 281
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.08 E-value=1.5e+02 Score=30.30 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 374 KHLQKEVARLEAELRTPDPSR-----EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 374 ~~LqkEi~~Le~eL~~~~~~~-----~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
.+++.++..|+.+|.....++ +-+..+.+++..+.+|+.....+..+++.++.++....
T Consensus 20 ~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 20 MKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555543221111 22345556666666666666666666666666665554
No 282
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=21.07 E-value=41 Score=41.35 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.7
Q ss_pred cCCceeEEEeccCCCCCcccc
Q 002128 111 MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+.|-||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 699999999999999999885
No 283
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.04 E-value=2.6e+02 Score=31.58 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELRRKLQED 431 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~ 431 (962)
++++++++.+.++...+++..++++.++.+++.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 443 KETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 445555555555555555555555555555444
No 284
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=21.00 E-value=25 Score=33.68 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=13.8
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999864
No 285
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=20.98 E-value=3.9e+02 Score=22.79 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 371 QLVKHLQKEVARLEAELRTPDPSREKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 371 ~li~~LqkEi~~Le~eL~~~~~~~~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
.-.++|++|+..|+.|+......-+. .+ -..|+++.|.+..+++.+.+.+.
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQDeF-AK-------WaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQDNY-AK-------WTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTH-HH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34678999999999999876532211 11 23344555555555555555444
No 286
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.87 E-value=2.7e+02 Score=29.08 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 402 QMEMEIEELKRQRDVAQSEVDELRR 426 (962)
Q Consensus 402 ~le~eieeLk~~~d~~q~el~~l~~ 426 (962)
.++.++.++..+++.++..++++..
T Consensus 108 ~lE~eile~~e~ie~~~~~l~~~~~ 132 (256)
T 3na7_A 108 QANREIENLQNEIKRKSEKQEDLKK 132 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 287
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=20.66 E-value=24 Score=34.05 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=13.5
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999876
No 288
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=20.60 E-value=25 Score=36.53 Aligned_cols=15 Identities=47% Similarity=0.569 Sum_probs=12.8
Q ss_pred eEEEeccCCCCCccc
Q 002128 116 TIFAYGQTSSGKTYT 130 (962)
Q Consensus 116 tIfAYGqTGSGKTyT 130 (962)
.|+-.|++|||||+.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467899999999974
No 289
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=20.57 E-value=39 Score=42.75 Aligned_cols=22 Identities=32% Similarity=0.161 Sum_probs=16.6
Q ss_pred HHHHhcCCceeEEEeccCCCCCcc
Q 002128 106 ALSALMGINATIFAYGQTSSGKTY 129 (962)
Q Consensus 106 V~svl~G~N~tIfAYGqTGSGKTy 129 (962)
+..++.|.| +++.|+||||||.
T Consensus 65 i~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 65 AKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHhCCC--EEEEcCCCCCHHH
Confidence 345667865 5778899999995
No 290
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.55 E-value=34 Score=36.40 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhcCC----CCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002128 373 VKHLQKEVARLEAELRTP----DPSR------EKDLKIQQMEMEIEELKRQRDVAQSEVDELRRKLQEDQ 432 (962)
Q Consensus 373 i~~LqkEi~~Le~eL~~~----~~~~------~ke~~iq~le~eieeLk~~~d~~q~el~~l~~~l~~~~ 432 (962)
+..+++|+..|+..+... .... +...++..+..+.+.|+..+..++.++..|+.++...+
T Consensus 26 ~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 26 LEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445667777666665321 1111 22233444444444455555555555555555555554
No 291
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=20.51 E-value=28 Score=34.39 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=13.9
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788899999999875
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=20.50 E-value=26 Score=33.23 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.7
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999865
No 293
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=20.50 E-value=59 Score=37.10 Aligned_cols=18 Identities=39% Similarity=0.359 Sum_probs=14.9
Q ss_pred eeEEEeccCCCCCccccc
Q 002128 115 ATIFAYGQTSSGKTYTMR 132 (962)
Q Consensus 115 ~tIfAYGqTGSGKTyTM~ 132 (962)
..|+..|.+|+|||+|+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456677999999999973
No 294
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=20.48 E-value=45 Score=35.75 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=15.5
Q ss_pred CCceeEEEeccCCCCCcccc
Q 002128 112 GINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 112 G~N~tIfAYGqTGSGKTyTM 131 (962)
+-...|.-.|.+|||||+.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456677899999999876
No 295
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.48 E-value=3.6e+02 Score=24.13 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 399 KIQQMEMEIEELKRQRDVAQSEVDELR 425 (962)
Q Consensus 399 ~iq~le~eieeLk~~~d~~q~el~~l~ 425 (962)
+|..-.++|+.+..+++..+..|.+|.
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555554444444443
No 296
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=20.31 E-value=42 Score=42.41 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=19.7
Q ss_pred cCCceeEEEeccCCCCCcccc
Q 002128 111 MGINATIFAYGQTSSGKTYTM 131 (962)
Q Consensus 111 ~G~N~tIfAYGqTGSGKTyTM 131 (962)
.+.|-||+.-|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999885
No 297
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.24 E-value=3.3e+02 Score=28.40 Aligned_cols=11 Identities=18% Similarity=0.018 Sum_probs=4.5
Q ss_pred hhHHhhHHHHH
Q 002128 489 EIRKLEHLQEQ 499 (962)
Q Consensus 489 ~~~~~~~~~~~ 499 (962)
||..++.....
T Consensus 98 Eie~~~~~i~~ 108 (256)
T 3na7_A 98 EEDIAKERSNQ 108 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 298
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.19 E-value=1.3e+02 Score=26.17 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002128 400 IQQMEMEIEELKRQRDVAQSEVDELRRKLQ 429 (962)
Q Consensus 400 iq~le~eieeLk~~~d~~q~el~~l~~~l~ 429 (962)
|..|+.++.+++.+.+.+..+...|+.++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555444
No 299
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=20.15 E-value=27 Score=36.12 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=13.0
Q ss_pred eEEEeccCCCCCcccc
Q 002128 116 TIFAYGQTSSGKTYTM 131 (962)
Q Consensus 116 tIfAYGqTGSGKTyTM 131 (962)
.+.-.|++|||||+.+
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456799999999877
Done!