Query 002129
Match_columns 962
No_of_seqs 580 out of 4465
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 17:09:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4E-41 8.7E-46 418.8 28.4 533 59-799 69-607 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.8E-39 8.2E-44 401.1 28.8 514 88-889 68-589 (968)
3 PLN03210 Resistant to P. syrin 99.9 3.7E-26 8E-31 283.3 26.5 186 1-188 490-686 (1153)
4 KOG0472 Leucine-rich repeat pr 99.9 3.8E-30 8.3E-35 255.0 -10.0 292 469-822 229-541 (565)
5 KOG0618 Serine/threonine phosp 99.9 1.7E-29 3.7E-34 276.5 -7.9 245 525-823 241-490 (1081)
6 KOG0472 Leucine-rich repeat pr 99.9 3.1E-30 6.7E-35 255.6 -14.7 262 36-329 47-308 (565)
7 KOG4194 Membrane glycoprotein 99.9 3E-26 6.4E-31 237.9 7.4 58 271-329 174-232 (873)
8 PLN03210 Resistant to P. syrin 99.9 3.8E-24 8.2E-29 265.5 22.7 293 525-912 611-910 (1153)
9 KOG4194 Membrane glycoprotein 99.9 1.3E-25 2.8E-30 233.2 5.4 365 60-558 79-448 (873)
10 KOG0618 Serine/threonine phosp 99.9 5E-26 1.1E-30 249.5 -5.0 264 467-794 240-508 (1081)
11 KOG0444 Cytoskeletal regulator 99.9 4E-24 8.7E-29 223.4 -3.0 246 33-329 6-256 (1255)
12 KOG0444 Cytoskeletal regulator 99.9 7.1E-24 1.5E-28 221.6 -2.9 341 466-885 30-376 (1255)
13 KOG4658 Apoptotic ATPase [Sign 99.9 5.1E-22 1.1E-26 232.4 11.0 187 1-196 483-678 (889)
14 KOG4237 Extracellular matrix p 99.6 2.6E-17 5.7E-22 164.3 -1.6 116 78-194 79-199 (498)
15 PRK15387 E3 ubiquitin-protein 99.6 5.7E-15 1.2E-19 169.5 15.4 214 525-821 201-414 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 7.5E-15 1.6E-19 168.5 16.3 78 89-176 201-278 (788)
17 KOG4237 Extracellular matrix p 99.6 3.6E-17 7.8E-22 163.4 -2.4 98 92-190 70-171 (498)
18 KOG0617 Ras suppressor protein 99.6 5.4E-17 1.2E-21 142.8 -5.8 128 53-188 27-155 (264)
19 KOG4658 Apoptotic ATPase [Sign 99.5 4.6E-14 1E-18 166.0 10.7 133 53-194 517-653 (889)
20 KOG0617 Ras suppressor protein 99.5 6.9E-16 1.5E-20 135.9 -3.9 146 34-190 33-180 (264)
21 PRK15370 E3 ubiquitin-protein 99.5 1.1E-13 2.4E-18 160.4 11.7 83 89-179 178-260 (754)
22 PRK15370 E3 ubiquitin-protein 99.5 2.1E-13 4.5E-18 158.0 12.0 202 549-821 178-379 (754)
23 cd00116 LRR_RI Leucine-rich re 99.1 8.8E-12 1.9E-16 135.0 -0.6 107 691-797 166-289 (319)
24 KOG4341 F-box protein containi 99.1 2.7E-12 5.9E-17 130.2 -4.4 275 527-847 140-436 (483)
25 cd00116 LRR_RI Leucine-rich re 99.1 1.6E-11 3.4E-16 133.1 0.5 107 690-796 137-260 (319)
26 KOG4341 F-box protein containi 99.0 1.7E-11 3.6E-16 124.5 -4.5 142 492-637 187-336 (483)
27 PF14580 LRR_9: Leucine-rich r 99.0 5.9E-10 1.3E-14 104.7 6.0 132 53-195 13-152 (175)
28 KOG0532 Leucine-rich repeat (L 98.8 1.3E-10 2.8E-15 122.6 -4.3 107 79-188 88-194 (722)
29 PF14580 LRR_9: Leucine-rich r 98.8 2.1E-09 4.5E-14 101.0 3.7 103 86-192 16-122 (175)
30 COG4886 Leucine-rich repeat (L 98.8 6.3E-09 1.4E-13 115.9 5.6 106 84-191 111-217 (394)
31 KOG3207 Beta-tubulin folding c 98.7 2.7E-09 5.9E-14 109.4 0.6 133 690-823 197-340 (505)
32 KOG3207 Beta-tubulin folding c 98.7 3.3E-09 7.2E-14 108.8 -0.5 135 762-904 197-335 (505)
33 COG4886 Leucine-rich repeat (L 98.6 3.6E-08 7.9E-13 109.8 6.3 126 55-189 112-238 (394)
34 PF13855 LRR_8: Leucine rich r 98.6 5.6E-08 1.2E-12 74.8 4.3 57 89-145 1-59 (61)
35 PLN03150 hypothetical protein; 98.5 1.1E-07 2.4E-12 110.6 7.6 100 90-189 419-521 (623)
36 KOG1259 Nischarin, modulator o 98.5 1.6E-08 3.4E-13 98.3 0.4 101 87-190 282-406 (490)
37 PRK15386 type III secretion pr 98.5 5.3E-07 1.2E-11 95.3 11.2 93 710-817 48-140 (426)
38 KOG0532 Leucine-rich repeat (L 98.5 2.1E-08 4.7E-13 106.2 -0.7 108 80-191 135-242 (722)
39 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.7E-12 71.5 4.0 58 112-170 1-60 (61)
40 PRK15386 type III secretion pr 98.4 9.7E-07 2.1E-11 93.4 9.9 57 549-612 52-108 (426)
41 KOG1259 Nischarin, modulator o 98.4 5.6E-08 1.2E-12 94.6 0.1 132 108-250 280-412 (490)
42 PLN03150 hypothetical protein; 98.3 7.3E-07 1.6E-11 103.9 7.1 113 691-803 419-532 (623)
43 KOG1909 Ran GTPase-activating 98.3 1.4E-07 3.1E-12 94.4 -0.1 34 690-723 30-67 (382)
44 PF12799 LRR_4: Leucine Rich r 98.3 9.1E-07 2E-11 61.8 3.5 40 89-128 1-40 (44)
45 KOG1909 Ran GTPase-activating 98.2 1.7E-07 3.8E-12 93.8 -0.4 88 83-170 24-131 (382)
46 KOG0531 Protein phosphatase 1, 98.1 3.9E-07 8.6E-12 101.4 -1.1 105 82-190 88-193 (414)
47 KOG2120 SCF ubiquitin ligase, 98.1 1E-07 2.2E-12 92.9 -5.4 183 690-905 185-373 (419)
48 KOG2120 SCF ubiquitin ligase, 98.1 2.5E-07 5.5E-12 90.2 -3.2 57 690-748 313-373 (419)
49 PF12799 LRR_4: Leucine Rich r 98.0 7.9E-06 1.7E-10 57.1 3.5 40 112-152 1-40 (44)
50 KOG0531 Protein phosphatase 1, 97.9 4.7E-06 1E-10 92.9 2.3 241 525-846 72-314 (414)
51 KOG1859 Leucine-rich repeat pr 97.8 2.9E-07 6.3E-12 100.5 -8.6 125 692-823 166-293 (1096)
52 KOG4579 Leucine-rich repeat (L 97.7 5.4E-06 1.2E-10 71.5 -0.3 90 87-178 51-141 (177)
53 KOG4579 Leucine-rich repeat (L 97.7 5.7E-06 1.2E-10 71.4 -1.5 101 87-189 25-129 (177)
54 KOG1947 Leucine rich repeat pr 97.6 4.2E-06 9.2E-11 96.6 -3.5 110 525-634 188-308 (482)
55 KOG2982 Uncharacterized conser 97.4 0.00015 3.2E-09 71.4 4.8 193 517-754 63-265 (418)
56 KOG1859 Leucine-rich repeat pr 97.4 4.5E-06 9.8E-11 91.5 -6.5 101 88-193 163-264 (1096)
57 KOG3665 ZYG-1-like serine/thre 97.4 0.00013 2.9E-09 84.7 4.2 106 58-170 121-231 (699)
58 KOG2982 Uncharacterized conser 97.3 0.0002 4.3E-09 70.6 3.8 189 712-912 69-266 (418)
59 KOG1644 U2-associated snRNP A' 97.2 0.00043 9.3E-09 64.6 5.0 104 87-193 40-150 (233)
60 KOG3665 ZYG-1-like serine/thre 97.2 0.00015 3.2E-09 84.4 2.2 112 81-195 111-232 (699)
61 KOG1947 Leucine rich repeat pr 97.2 7.1E-05 1.5E-09 86.4 -1.0 117 493-613 186-310 (482)
62 COG5238 RNA1 Ran GTPase-activa 96.9 0.00037 8E-09 67.8 1.7 99 81-180 22-141 (388)
63 COG5238 RNA1 Ran GTPase-activa 96.6 0.00072 1.6E-08 65.8 1.0 86 106-192 24-129 (388)
64 KOG2739 Leucine-rich acidic nu 96.6 0.0013 2.8E-08 64.4 2.6 105 87-194 41-154 (260)
65 KOG1644 U2-associated snRNP A' 96.6 0.0036 7.8E-08 58.6 5.2 88 82-170 57-151 (233)
66 PF00560 LRR_1: Leucine Rich R 96.6 0.00097 2.1E-08 38.5 0.9 19 114-132 2-20 (22)
67 KOG2123 Uncharacterized conser 96.2 0.00037 8E-09 68.0 -3.5 99 88-189 18-123 (388)
68 PF00560 LRR_1: Leucine Rich R 96.0 0.0029 6.3E-08 36.5 1.0 22 90-111 1-22 (22)
69 KOG2123 Uncharacterized conser 95.8 0.00096 2.1E-08 65.3 -2.6 82 85-167 36-125 (388)
70 PF13306 LRR_5: Leucine rich r 95.5 0.047 1E-06 49.5 7.3 117 54-185 7-128 (129)
71 KOG2739 Leucine-rich acidic nu 95.0 0.012 2.6E-07 57.8 1.7 85 104-191 35-124 (260)
72 PF13504 LRR_7: Leucine rich r 94.9 0.015 3.3E-07 31.0 1.3 16 113-128 2-17 (17)
73 KOG3864 Uncharacterized conser 94.3 0.01 2.2E-07 55.8 -0.6 90 809-910 101-191 (221)
74 KOG0473 Leucine-rich repeat pr 94.0 0.0021 4.6E-08 61.2 -5.5 86 84-170 37-122 (326)
75 PF13306 LRR_5: Leucine rich r 94.0 0.12 2.6E-06 46.8 6.0 101 81-188 3-108 (129)
76 PF13504 LRR_7: Leucine rich r 94.0 0.037 8E-07 29.5 1.5 17 89-105 1-17 (17)
77 KOG0473 Leucine-rich repeat pr 93.5 0.0035 7.6E-08 59.8 -5.1 88 101-190 30-118 (326)
78 KOG3864 Uncharacterized conser 92.9 0.016 3.5E-07 54.5 -1.7 91 753-846 92-185 (221)
79 smart00369 LRR_TYP Leucine-ric 92.2 0.13 2.7E-06 31.1 2.1 20 111-130 1-20 (26)
80 smart00370 LRR Leucine-rich re 92.2 0.13 2.7E-06 31.1 2.1 20 111-130 1-20 (26)
81 smart00370 LRR Leucine-rich re 86.9 0.44 9.6E-06 28.7 1.6 21 88-108 1-21 (26)
82 smart00369 LRR_TYP Leucine-ric 86.9 0.44 9.6E-06 28.7 1.6 21 88-108 1-21 (26)
83 smart00365 LRR_SD22 Leucine-ri 80.2 1.4 3.1E-05 26.5 1.7 17 111-127 1-17 (26)
84 smart00364 LRR_BAC Leucine-ric 80.2 1.1 2.5E-05 26.8 1.3 17 113-129 3-19 (26)
85 smart00367 LRR_CC Leucine-rich 69.7 3.1 6.8E-05 25.0 1.4 14 896-909 3-16 (26)
86 PF13516 LRR_6: Leucine Rich r 63.9 4.4 9.6E-05 23.7 1.3 13 113-125 3-15 (24)
87 smart00368 LRR_RI Leucine rich 61.7 6 0.00013 24.3 1.6 14 112-125 2-15 (28)
88 KOG4308 LRR-containing protein 45.1 0.88 1.9E-05 51.1 -7.1 36 691-726 145-184 (478)
89 KOG3763 mRNA export factor TAP 36.6 15 0.00033 40.9 0.9 20 465-484 215-234 (585)
90 PF05725 FNIP: FNIP Repeat; I 33.1 57 0.0012 22.6 3.0 31 896-927 13-43 (44)
91 KOG3763 mRNA export factor TAP 22.8 51 0.0011 37.0 1.9 45 571-615 243-287 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-41 Score=418.76 Aligned_cols=533 Identities=17% Similarity=0.171 Sum_probs=315.8
Q ss_pred CceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCc-ccCccc-cCCCcCcEEEcCCCccc-ccChhhhccC
Q 002129 59 QHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRIL-ELPDSV-GDLRYLRYLNLSGTEIR-TLPESVSKLY 135 (962)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~-~~L~~L~~L~Ls~n~i~-~lp~~i~~L~ 135 (962)
.+++.|.+.++. +....++.+..+++|++|+|++|.++ .+|..+ ..+++||+|+|++|.++ .+|. +.++
T Consensus 69 ~~v~~L~L~~~~------i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 69 SRVVSIDLSGKN------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred CcEEEEEecCCC------ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 356666655432 12233333446777777777777765 566554 36777777777777665 3443 4566
Q ss_pred CccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeE
Q 002129 136 NLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLC 215 (962)
Q Consensus 136 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~ 215 (962)
+|++|++++|...+.+|..++.+++|++|++++|.+.+.+|..++++++|++|++..+..
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l-------------------- 200 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL-------------------- 200 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC--------------------
Confidence 777777777655556676677777777777777765556666666666666664422110
Q ss_pred EecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCC-CCCccccCCCC
Q 002129 216 ISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGM-KFPTWLGDSSF 294 (962)
Q Consensus 216 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l 294 (962)
....+..+..+++|+.|++++ +... .+|.++. .+
T Consensus 201 ----------~~~~p~~l~~l~~L~~L~L~~---------------------------------n~l~~~~p~~l~--~l 235 (968)
T PLN00113 201 ----------VGQIPRELGQMKSLKWIYLGY---------------------------------NNLSGEIPYEIG--GL 235 (968)
T ss_pred ----------cCcCChHHcCcCCccEEECcC---------------------------------CccCCcCChhHh--cC
Confidence 000111122333333333332 2221 3444443 35
Q ss_pred CCceEEEEecCCCCCCCC-CCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCccc
Q 002129 295 SKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGV 373 (962)
Q Consensus 295 ~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 373 (962)
++|++|++++|.+.+.+| .++.+++|++|++++|.....+.. ..
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-----------------------------------~l 280 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-----------------------------------SI 280 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-----------------------------------hH
Confidence 666666666666555544 456666666666665532111100 02
Q ss_pred ccCCCccEEEeccCCcccccCCCCCCCccEEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccC
Q 002129 374 ERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDT 453 (962)
Q Consensus 374 ~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (962)
..+++|++|++++| .+.+.+|. .+..+++|+.|++.+|.....
T Consensus 281 ~~l~~L~~L~Ls~n-~l~~~~p~------------------~~~~l~~L~~L~l~~n~~~~~------------------ 323 (968)
T PLN00113 281 FSLQKLISLDLSDN-SLSGEIPE------------------LVIQLQNLEILHLFSNNFTGK------------------ 323 (968)
T ss_pred hhccCcCEEECcCC-eeccCCCh------------------hHcCCCCCcEEECCCCccCCc------------------
Confidence 33455555555555 33334442 122233333333333321110
Q ss_pred CccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecc
Q 002129 454 SNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLS 533 (962)
Q Consensus 454 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls 533 (962)
.......+++|+.|++++|.+.+. .+..+..+++|+.|+++++.-...++.. +..+ ++|+.|+++
T Consensus 324 ------~~~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-----~~~~-~~L~~L~l~ 388 (968)
T PLN00113 324 ------IPVALTSLPRLQVLQLWSNKFSGE---IPKNLGKHNNLTVLDLSTNNLTGEIPEG-----LCSS-GNLFKLILF 388 (968)
T ss_pred ------CChhHhcCCCCCEEECcCCCCcCc---CChHHhCCCCCcEEECCCCeeEeeCChh-----HhCc-CCCCEEECc
Confidence 000112455666667766665532 2334566788888888885333333321 2222 678888888
Q ss_pred cccCccccCccCCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCC
Q 002129 534 YCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLT 612 (962)
Q Consensus 534 ~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 612 (962)
+|.....+|..+..+++|+.|++++|+....+| .+..+++|+.|++++|...+.++... ..+++|+.|++++|....
T Consensus 389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeee
Confidence 888777788778888888888888876665555 35567788888888887555555444 567888888888876655
Q ss_pred cccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCc
Q 002129 613 YIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSL 692 (962)
Q Consensus 613 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L 692 (962)
.+|.....++|+.|++++|.-...++ ..+..+ ++|
T Consensus 467 ~~p~~~~~~~L~~L~ls~n~l~~~~~---------------------------------------~~~~~l------~~L 501 (968)
T PLN00113 467 GLPDSFGSKRLENLDLSRNQFSGAVP---------------------------------------RKLGSL------SEL 501 (968)
T ss_pred ecCcccccccceEEECcCCccCCccC---------------------------------------hhhhhh------hcc
Confidence 55544334556666666553221111 111111 678
Q ss_pred cEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccc
Q 002129 693 KLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNC 772 (962)
Q Consensus 693 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c 772 (962)
++|++++|...+.+|..+.++++|++|++++|...+.+|..+.++++|++|++++|...+.+|.....+++|+.|++++|
T Consensus 502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 88888888888888888888888888888888888888888888888888888888777778877777778888888888
Q ss_pred cccccCccccCCCcccceeecCCCCCC
Q 002129 773 KRLEALPKGLHNLKSLQELRIGKGVAL 799 (962)
Q Consensus 773 ~~l~~~~~~~~~l~~L~~L~l~~~~~l 799 (962)
+..+.+|.. +.+..+....+.+|+.+
T Consensus 582 ~l~~~~p~~-~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 582 HLHGSLPST-GAFLAINASAVAGNIDL 607 (968)
T ss_pred cceeeCCCc-chhcccChhhhcCCccc
Confidence 877777753 33444555555666544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.8e-39 Score=401.09 Aligned_cols=514 Identities=18% Similarity=0.193 Sum_probs=334.5
Q ss_pred CCcccEEEecCCCCc-ccCccccCCCcCcEEEcCCCccc-ccChhhh-ccCCccEEecCCCcchhccchhhhccCCCcEE
Q 002129 88 LQSLRVFSLRGYRIL-ELPDSVGDLRYLRYLNLSGTEIR-TLPESVS-KLYNLHSLLLEDCDRLEKLCADMGNLVKLHHL 164 (962)
Q Consensus 88 l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~n~i~-~lp~~i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 164 (962)
..+++.|+|++|.++ .+|..|..+++|++|+|++|++. .+|..+. .+++|++|++++|+..+.+|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 457899999999887 55778899999999999999987 7887754 899999999999776667774 568899999
Q ss_pred eccCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEE
Q 002129 165 KNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWL 244 (962)
Q Consensus 165 ~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 244 (962)
++++|.+.+.+|..++.+++|++|++..
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~---------------------------------------------------- 173 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGG---------------------------------------------------- 173 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECcc----------------------------------------------------
Confidence 9999885556676666666666663321
Q ss_pred EeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCC-CCCCccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCe
Q 002129 245 RWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGG-MKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKH 322 (962)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~ 322 (962)
|.. ..+|.++. .+++|++|++++|.+.+.+| .++.+++|++
T Consensus 174 -----------------------------------n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 174 -----------------------------------NVLVGKIPNSLT--NLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred -----------------------------------CcccccCChhhh--hCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 111 12233332 35555555665555554444 4555566666
Q ss_pred EEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccccCCCccEEEeccCCcccccCCCCCCCcc
Q 002129 323 LTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALE 402 (962)
Q Consensus 323 L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~ 402 (962)
|++++|.....+. ..++.+++|++|++++| .+.+.+|.
T Consensus 217 L~L~~n~l~~~~p-----------------------------------~~l~~l~~L~~L~L~~n-~l~~~~p~------ 254 (968)
T PLN00113 217 IYLGYNNLSGEIP-----------------------------------YEIGGLTSLNHLDLVYN-NLTGPIPS------ 254 (968)
T ss_pred EECcCCccCCcCC-----------------------------------hhHhcCCCCCEEECcCc-eeccccCh------
Confidence 6655543111100 00234555555665555 33333332
Q ss_pred EEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccce
Q 002129 403 MLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTY 482 (962)
Q Consensus 403 ~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 482 (962)
.+. .+++|++|++++|.+.+
T Consensus 255 ------------~l~------------------------------------------------~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 255 ------------SLG------------------------------------------------NLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ------------hHh------------------------------------------------CCCCCCEEECcCCeeec
Confidence 111 12223333333332221
Q ss_pred eecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCCCCccEEEecCCCCc
Q 002129 483 IWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSL 562 (962)
Q Consensus 483 i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l 562 (962)
. ++. .+..+ ++|++|++++|.....+|..+..+++|+.|++++|...
T Consensus 275 ~---------------------------~p~-----~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 275 P---------------------------IPP-----SIFSL-QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred c---------------------------Cch-----hHhhc-cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 1 111 12222 67788888888777788888899999999999998776
Q ss_pred cccCC-CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCC-CCCCCCceEEecccCCCcccccc
Q 002129 563 VSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV-QLPPSLKRLKICHCDNIRTLTVE 640 (962)
Q Consensus 563 ~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~ 640 (962)
..+|. +..+++|+.|++++|...+.+|..+ ..+++|+.|++++|.....+|.. ...++|+.|++.+|.-...++
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p-- 397 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP-- 397 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC--
Confidence 66663 5668899999999998766777665 67889999999987544444432 223456666665553221111
Q ss_pred ccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEe
Q 002129 641 EGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKIN 720 (962)
Q Consensus 641 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 720 (962)
..+..+ ++|+.|++++|...+.+|..+..+++|+.|+
T Consensus 398 -------------------------------------~~~~~~------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 398 -------------------------------------KSLGAC------RSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred -------------------------------------HHHhCC------CCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 111111 6788888888888877888888888888888
Q ss_pred ecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccceeecCCCCCCC
Q 002129 721 ISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALP 800 (962)
Q Consensus 721 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 800 (962)
+++|.+.+.+|..+..+++|+.|++++|...+.+|... ..++|+.|++++|...+.+|..+.++++|++|++++|....
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 88888877777777788888888888887666666543 34678888888888777777778888888888888886555
Q ss_pred CCCCC-CCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeec
Q 002129 801 SLEED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIE 879 (962)
Q Consensus 801 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 879 (962)
.+|.. ..+++|++|++++|......+ ..+..+++|+.|++++|. ....+|... ..+++|+.|+++
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~-l~~~~p~~l---------~~l~~L~~l~ls 579 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIP----ASFSEMPVLSQLDLSQNQ-LSGEIPKNL---------GNVESLVQVNIS 579 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCC----hhHhCcccCCEEECCCCc-ccccCChhH---------hcCcccCEEecc
Confidence 55543 456777777777777665544 346667777777777753 233344322 355667777777
Q ss_pred cCCCCccccc
Q 002129 880 GFPNLERLTS 889 (962)
Q Consensus 880 ~~~~l~~l~~ 889 (962)
+|+....+|.
T Consensus 580 ~N~l~~~~p~ 589 (968)
T PLN00113 580 HNHLHGSLPS 589 (968)
T ss_pred CCcceeeCCC
Confidence 7655555653
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=3.7e-26 Score=283.34 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=126.0
Q ss_pred CcchHHHHHHHHhccce-------EEEecccc--cccccccCCceeEEEEEecCCCccc-ccccccCCCceeEEeecccc
Q 002129 1 MHDLVSDLAQWAAGEMY-------FTMEYTSE--VNKQQRFSRYLRHLSYIRGDYDGVQ-RFGDLYDIQHLRTFLPVILS 70 (962)
Q Consensus 1 mHdlv~d~a~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~r~lsl~~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~ 70 (962)
|||++||||+++++++. +.+....- ......-.+.++++++....+.... ....|..+++|+.|.+....
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 99999999999997753 22221100 0001112356788777654443221 23456788888888775542
Q ss_pred CCCCCCCCcccccccccC-CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchh
Q 002129 71 NSKPGYLAPSMLPKLLKL-QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLE 149 (962)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~ 149 (962)
..........+|+++..+ .+||+|++.++.++.+|..| ...+|++|++++|.+..+|.++..+++|+.|++++|+.++
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence 101111233456666544 56888888888888888877 5688888888888888888888888888888888877777
Q ss_pred ccchhhhccCCCcEEeccCCccccccccccccccccccc
Q 002129 150 KLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (962)
Q Consensus 150 ~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L 188 (962)
.+| .++.+++|++|++++|..+..+|..++++++|+.|
T Consensus 649 ~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 649 EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 777 47788888888888887667777666666666655
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=3.8e-30 Score=254.98 Aligned_cols=292 Identities=23% Similarity=0.249 Sum_probs=156.4
Q ss_pred CcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCC
Q 002129 469 KLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSL 548 (962)
Q Consensus 469 ~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l 548 (962)
.|+++++..|++.-+ +......++++..||+++ ++++++|.+. ++..+|++||+++|. +..+|..++++
T Consensus 229 ~L~Elh~g~N~i~~l---pae~~~~L~~l~vLDLRd-Nklke~Pde~------clLrsL~rLDlSNN~-is~Lp~sLgnl 297 (565)
T KOG0472|consen 229 LLKELHVGENQIEML---PAEHLKHLNSLLVLDLRD-NKLKEVPDEI------CLLRSLERLDLSNND-ISSLPYSLGNL 297 (565)
T ss_pred HHHHHHhcccHHHhh---HHHHhcccccceeeeccc-cccccCchHH------HHhhhhhhhcccCCc-cccCCcccccc
Confidence 344444444444332 222334667777777777 7888888762 344889999999976 46788889999
Q ss_pred CCccEEEecCCCCccc---cCCCC---CCCCCcEE----EEcCCCCCCC----Chhhhh--cCCCCCccEEEecCCCCCC
Q 002129 549 SSLREIEIYGCRSLVS---FPEVA---LPSKLKKI----EISSCDALKS----LPEAWM--CDTNSSLEILEISGCDSLT 612 (962)
Q Consensus 549 ~~L~~L~l~~~~~l~~---~~~~~---~~~~L~~L----~l~~~~~l~~----~~~~~~--~~~l~~L~~L~l~~c~~l~ 612 (962)
.|+.|.+.+|+.-+- +-..+ .++.|+.= -++.-..-+. .+...+ .....+.+.|++++ .+++
T Consensus 298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt 375 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLT 375 (565)
T ss_pred -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccc
Confidence 999999999875331 11111 11111110 0010000000 000000 02345677778777 5555
Q ss_pred cccCCCCC----CCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCC
Q 002129 613 YIAGVQLP----PSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNL 688 (962)
Q Consensus 613 ~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l 688 (962)
.+|...+- .-....+++++ ++..+ |..+..+
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskN-qL~el---------------------------------------Pk~L~~l----- 410 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKN-QLCEL---------------------------------------PKRLVEL----- 410 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccc-hHhhh---------------------------------------hhhhHHH-----
Confidence 55542110 01222222222 11111 1111111
Q ss_pred ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129 689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA 768 (962)
Q Consensus 689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~ 768 (962)
..+...-+..++..+-+|..+..+++|..|++++ +.+.++|..++.+..|+.|+|+.| ....+|........|+.+-
T Consensus 411 -kelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtll 487 (565)
T KOG0472|consen 411 -KELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLL 487 (565)
T ss_pred -HHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHH
Confidence 2233223333445555666677777777777775 446666777777777777777776 5666666555555566665
Q ss_pred cccccccccCc-cccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhh
Q 002129 769 IYNCKRLEALP-KGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEI 822 (962)
Q Consensus 769 l~~c~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 822 (962)
.++|+ ++.++ +++.++.+|..|++.+|......|..+.+++|++|.++||++.
T Consensus 488 as~nq-i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 488 ASNNQ-IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hcccc-ccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 66566 34443 3477777777777776633333333466667777777766654
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-29 Score=276.45 Aligned_cols=245 Identities=22% Similarity=0.265 Sum_probs=165.9
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL 603 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 603 (962)
.+|+.++++++. ...+|.++..+.+|+.+...+|.. +.+| .....++|+.|.+..|. ++.+|... ..+.+|++|
T Consensus 241 ~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~l--e~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFL--EGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhh-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcc--cccceeeee
Confidence 556666666644 345556666777777777766433 4444 23445667777776666 66666544 556677777
Q ss_pred EecCCCCCCcccCCCCC---CCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccc
Q 002129 604 EISGCDSLTYIAGVQLP---PSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATL 680 (962)
Q Consensus 604 ~l~~c~~l~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 680 (962)
++.. +++..+|...+. .+|+.+..+.+ .+...+. +.++..
T Consensus 316 dL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~-------------------------------~~e~~~---- 358 (1081)
T KOG0618|consen 316 DLQS-NNLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPS-------------------------------YEENNH---- 358 (1081)
T ss_pred eehh-ccccccchHHHhhhhHHHHHHhhhhc-ccccccc-------------------------------ccchhh----
Confidence 7776 445555442110 11222221111 1111110 111111
Q ss_pred cccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCC
Q 002129 681 ESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLP 760 (962)
Q Consensus 681 ~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 760 (962)
+.|+.|++.+|...+...+.+.+.++|+.|+|++|.+..-....+.+++.|++|++++| +++.+|.....
T Consensus 359 ---------~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~ 428 (1081)
T KOG0618|consen 359 ---------AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVAN 428 (1081)
T ss_pred ---------HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHh
Confidence 68999999999999999899999999999999997754444456789999999999999 89999998888
Q ss_pred cccccccccccccccccCccccCCCcccceeecCCCCCCCC-CCCCCCCCccceEeecCchhhh
Q 002129 761 CAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPS-LEEDGLPTNLHVLLINGNMEIW 823 (962)
Q Consensus 761 ~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~L~~L~l~~~~~~~ 823 (962)
++.|++|...+|. +..+| .+..+++|+.+|++.|..-.. +++....++|++|+++||....
T Consensus 429 ~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred hhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 9999999999988 67788 888999999999998853222 3332223899999999998543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=3.1e-30 Score=255.63 Aligned_cols=262 Identities=24% Similarity=0.266 Sum_probs=142.0
Q ss_pred eeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCc
Q 002129 36 LRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLR 115 (962)
Q Consensus 36 ~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~ 115 (962)
...+.+++|+.... .+++.++..+.+|.+.++. ..+.|+.+..+..+..|+.++|++.++|+.++.+..|+
T Consensus 47 l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~-------l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL--REDLKNLACLTVLNVHDNK-------LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred hhhhhhccCchhhc--cHhhhcccceeEEEeccch-------hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 34455555554432 2345556666666655543 45566666666666666666666666666666666666
Q ss_pred EEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeecC
Q 002129 116 YLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGK 195 (962)
Q Consensus 116 ~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~ 195 (962)
.|+.++|.+.++|++|+.+..|+.|+..+ +.+.++|++++.+.+|..|++.+|+ ++.+|...-+++.|++|+...+.-
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLL 195 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhh
Confidence 66666666666666666666666666665 4466666666666666666666666 555555544466666664322110
Q ss_pred CCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceE
Q 002129 196 DSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQF 275 (962)
Q Consensus 196 ~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L 275 (962)
+..+.+++.+..|. .++... +.....+ .|.++..|+++++..|. .++-..+....++.+..|
T Consensus 196 --~tlP~~lg~l~~L~-~LyL~~-----Nki~~lP-ef~gcs~L~Elh~g~N~---------i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 196 --ETLPPELGGLESLE-LLYLRR-----NKIRFLP-EFPGCSLLKELHVGENQ---------IEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred --hcCChhhcchhhhH-HHHhhh-----cccccCC-CCCccHHHHHHHhcccH---------HHhhHHHHhcccccceee
Confidence 12222222222221 000000 0000011 24445555555554443 112222334455666666
Q ss_pred EEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129 276 CIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS 329 (962)
Q Consensus 276 ~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 329 (962)
+++.|+..++|..+. .+++|++|++++|.+..-.+.++++ +|+.|.+.||+
T Consensus 258 DLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 258 DLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 666666666666664 3566667777776655555566666 66666666665
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=3e-26 Score=237.87 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=32.5
Q ss_pred CcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEEcCCC
Q 002129 271 NLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRGMS 329 (962)
Q Consensus 271 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 329 (962)
++++|++.+|.++.+-..-++ ++.+|..|.|+.|.+....+ .|..+|+|+.|+|..|.
T Consensus 174 ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred CceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 344444444444444333332 45667777777776554433 56667777777776653
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=3.8e-24 Score=265.51 Aligned_cols=293 Identities=24% Similarity=0.382 Sum_probs=138.8
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
.+|+.|++++|. +..+|.++..+++|+.|++++|..++.+|.+..+++|++|++++|..+..+|..+ ..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSI--QYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhh--hccCCCCEEe
Confidence 445555555543 3344444445555555555555445555544445555555555555454444443 4445555555
Q ss_pred ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129 605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE 684 (962)
Q Consensus 605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 684 (962)
+++|+.++.+|....+++|+.|.+++|..++.+|.
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~--------------------------------------------- 722 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD--------------------------------------------- 722 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc---------------------------------------------
Confidence 55555554444433334444444444433332220
Q ss_pred cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccc------c-CccccCCCCccEEEcccCCCcccCCCC
Q 002129 685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQT------L-PSGLHNLCQLQEISIASCGNLVSSPEG 757 (962)
Q Consensus 685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------~-~~~l~~l~~L~~L~L~~~~~l~~~~~~ 757 (962)
.+.+|++|++++|.+ ..+|..+ .+++|++|.+.++..... + +......++|++|++++|+.+..+|..
T Consensus 723 ---~~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s 797 (1153)
T PLN03210 723 ---ISTNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797 (1153)
T ss_pred ---ccCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence 014566666666553 3344332 355556555554332110 0 001111234444444444444444444
Q ss_pred CCCcccccccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccC
Q 002129 758 GLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFS 837 (962)
Q Consensus 758 ~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 837 (962)
+..+++|+.|++++|..++.+|..+ ++++|+.|++++|..+..+|. . .+
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~----------------------------~~ 846 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--I----------------------------ST 846 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--c----------------------------cc
Confidence 4444444444444444444444433 344444444444444443332 1 23
Q ss_pred ccceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCC
Q 002129 838 SLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFP 912 (962)
Q Consensus 838 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 912 (962)
+|+.|+++++ ..+.+|... ..+++|+.|++++|++++.+|..+..+++|+.+++.+|++|+.++
T Consensus 847 nL~~L~Ls~n--~i~~iP~si---------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 847 NISDLNLSRT--GIEEVPWWI---------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccCEeECCCC--CCccChHHH---------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 4555555553 233333322 245566666666666666666666666666666666666665543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-25 Score=233.17 Aligned_cols=365 Identities=18% Similarity=0.160 Sum_probs=229.8
Q ss_pred ceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccC-hhhhccCCc
Q 002129 60 HLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLP-ESVSKLYNL 137 (962)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp-~~i~~L~~L 137 (962)
.-++|.+..+. ...+-..+| ++++|+.+++.+|.++.+|...+...||+.|+|.+|.|+++. +++..+..|
T Consensus 79 ~t~~LdlsnNk-------l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 79 QTQTLDLSNNK-------LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred ceeeeeccccc-------cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 44566665543 333444445 777888888877777777777677777888888888777774 447777778
Q ss_pred cEEecCCCcchhccch-hhhccCCCcEEeccCCccccccccc-ccccccccccceeeecCCCCCCcccccccccccceeE
Q 002129 138 HSLLLEDCDRLEKLCA-DMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLC 215 (962)
Q Consensus 138 ~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~ 215 (962)
|+|||+. +.+.++|. .|..=.++++|+|++|. ++.+-.+ |..+.+|.+|.+..+.
T Consensus 152 rslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr--------------------- 208 (873)
T KOG4194|consen 152 RSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR--------------------- 208 (873)
T ss_pred hhhhhhh-chhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCc---------------------
Confidence 8888877 45666664 36666777788888777 6666544 6666666666443221
Q ss_pred EecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCC
Q 002129 216 ISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFS 295 (962)
Q Consensus 216 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~ 295 (962)
........|.++++|+.|++..|.+. +...-.|+.++.|+.|.+..|++..+.+..+- .+.
T Consensus 209 ---------ittLp~r~Fk~L~~L~~LdLnrN~ir---------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-~l~ 269 (873)
T KOG4194|consen 209 ---------ITTLPQRSFKRLPKLESLDLNRNRIR---------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY-GLE 269 (873)
T ss_pred ---------ccccCHHHhhhcchhhhhhcccccee---------eehhhhhcCchhhhhhhhhhcCcccccCccee-eec
Confidence 11112233666777777877766521 11123456677777777777777766555443 467
Q ss_pred CceEEEEecCCCCCCCC-CCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccc
Q 002129 296 KLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVE 374 (962)
Q Consensus 296 ~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 374 (962)
++++|+|+.|.+...-. ++-++..|+.|++++|. ++.+. ... -.
T Consensus 270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih-------------------------~d~---------Ws 314 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIH-------------------------IDS---------WS 314 (873)
T ss_pred ccceeecccchhhhhhcccccccchhhhhccchhh-hheee-------------------------cch---------hh
Confidence 77777777776544322 56667777777776663 11111 111 13
Q ss_pred cCCCccEEEeccCCcccccCCCCCCCccEEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCC
Q 002129 375 RFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTS 454 (962)
Q Consensus 375 ~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (962)
..++|++|+++++ .++ .+++. .+..+..|+.|.+++|..-.
T Consensus 315 ftqkL~~LdLs~N-~i~-~l~~~-----------------sf~~L~~Le~LnLs~Nsi~~-------------------- 355 (873)
T KOG4194|consen 315 FTQKLKELDLSSN-RIT-RLDEG-----------------SFRVLSQLEELNLSHNSIDH-------------------- 355 (873)
T ss_pred hcccceeEecccc-ccc-cCChh-----------------HHHHHHHhhhhcccccchHH--------------------
Confidence 4677888888777 665 55531 33334444555555444221
Q ss_pred ccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeeccc
Q 002129 455 NQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSY 534 (962)
Q Consensus 455 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~ 534 (962)
+....+..+.+|++|+|++|.++.........+.++++|+.|++.+ ++++.|+.. +|..+ +.|++|+|.+
T Consensus 356 ----l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr----Afsgl-~~LE~LdL~~ 425 (873)
T KOG4194|consen 356 ----LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR----AFSGL-EALEHLDLGD 425 (873)
T ss_pred ----HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchh----hhccC-cccceecCCC
Confidence 2223445677888888888888776666666677788888888888 777777765 45555 7788888888
Q ss_pred ccCccccCccCCCCCCccEEEecC
Q 002129 535 CEGLVKLPQSSLSLSSLREIEIYG 558 (962)
Q Consensus 535 ~~~l~~~~~~~~~l~~L~~L~l~~ 558 (962)
|.....-|.+|..+ .|++|.+..
T Consensus 426 NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 426 NAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred Ccceeecccccccc-hhhhhhhcc
Confidence 77766666677666 777777654
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=5e-26 Score=249.47 Aligned_cols=264 Identities=23% Similarity=0.279 Sum_probs=150.4
Q ss_pred CCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCC
Q 002129 467 LPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSL 546 (962)
Q Consensus 467 ~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~ 546 (962)
..+|++++++.|+++.+ +.|...+.+|+.+++.+ +.+..++... ... .+|+.|.+.+|. ++.+|....
T Consensus 240 p~nl~~~dis~n~l~~l----p~wi~~~~nle~l~~n~-N~l~~lp~ri-----~~~-~~L~~l~~~~ne-l~yip~~le 307 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNL----PEWIGACANLEALNANH-NRLVALPLRI-----SRI-TSLVSLSAAYNE-LEYIPPFLE 307 (1081)
T ss_pred cccceeeecchhhhhcc----hHHHHhcccceEecccc-hhHHhhHHHH-----hhh-hhHHHHHhhhhh-hhhCCCccc
Confidence 35778888888877765 26678888899888887 7776666542 222 778888888876 567777788
Q ss_pred CCCCccEEEecCCCCccccCCCC--C-CCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCc--ccCCCCCC
Q 002129 547 SLSSLREIEIYGCRSLVSFPEVA--L-PSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTY--IAGVQLPP 621 (962)
Q Consensus 547 ~l~~L~~L~l~~~~~l~~~~~~~--~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~ 621 (962)
.+.+|++|+|.. +.+..+|... . ..+|+.|..+.+. +...|.. -...++.|+.|++.+| .+++ +|......
T Consensus 308 ~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~-~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 308 GLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSY-EENNHAALQELYLANN-HLTDSCFPVLVNFK 383 (1081)
T ss_pred ccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhcc-ccccccc-cchhhHHHHHHHHhcC-cccccchhhhcccc
Confidence 899999999998 4566666521 1 2336677777665 4444421 1145567777777774 3332 33334445
Q ss_pred CCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCC
Q 002129 622 SLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCS 701 (962)
Q Consensus 622 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~ 701 (962)
+|+.|+++++. +..+|.. .+.. + ..|++|++++|.
T Consensus 384 hLKVLhLsyNr-L~~fpas--------------------------------------~~~k-----l-e~LeeL~LSGNk 418 (1081)
T KOG0618|consen 384 HLKVLHLSYNR-LNSFPAS--------------------------------------KLRK-----L-EELEELNLSGNK 418 (1081)
T ss_pred ceeeeeecccc-cccCCHH--------------------------------------HHhc-----h-HHhHHHhcccch
Confidence 56666665542 2222210 0011 1 456666666654
Q ss_pred CchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccc
Q 002129 702 KLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKG 781 (962)
Q Consensus 702 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 781 (962)
+..+|..+..+..|++|...+|.+. ..| .+..+++|+.+|++.|..-...-....+.|+|++||++||..+..--..
T Consensus 419 -L~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~ 495 (1081)
T KOG0618|consen 419 -LTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKT 495 (1081)
T ss_pred -hhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhh
Confidence 4445566666666666666654432 334 4556666666666655322221122233356666666666543222223
Q ss_pred cCCCcccceeecC
Q 002129 782 LHNLKSLQELRIG 794 (962)
Q Consensus 782 ~~~l~~L~~L~l~ 794 (962)
+..+..+...++.
T Consensus 496 l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 496 LKVLKSLSQMDIT 508 (1081)
T ss_pred hHHhhhhhheecc
Confidence 3334444444443
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=4e-24 Score=223.42 Aligned_cols=246 Identities=18% Similarity=0.204 Sum_probs=133.3
Q ss_pred CCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCC
Q 002129 33 SRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLR 112 (962)
Q Consensus 33 ~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~ 112 (962)
-+-||.+++++|++.+.--+.+...+++++.|.+.+.. ...+|.++..+.+|+.|.+.+|++..+...+..|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-------L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp 78 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-------LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLP 78 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-------hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccch
Confidence 34567777777776544334455566677777665432 34556666666666666666666665555566666
Q ss_pred cCcEEEcCCCccc--ccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccc-ccccccccccc
Q 002129 113 YLRYLNLSGTEIR--TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLC 189 (962)
Q Consensus 113 ~L~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~ 189 (962)
.||.+++..|++. .+|..|.+|..|.+|||++ +.+.+.|.++..-+++-.|+|++|+ +..+|.. +-+|+.|-.|+
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhc
Confidence 6666666666554 4566666666666666666 4566666666666666666666665 5666654 45555555554
Q ss_pred eeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCC
Q 002129 190 SFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPH 269 (962)
Q Consensus 190 ~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 269 (962)
++.+. .+..+.....+..|+.|.+++|. .....+..+..+
T Consensus 157 LS~Nr-------------------------------Le~LPPQ~RRL~~LqtL~Ls~NP---------L~hfQLrQLPsm 196 (1255)
T KOG0444|consen 157 LSNNR-------------------------------LEMLPPQIRRLSMLQTLKLSNNP---------LNHFQLRQLPSM 196 (1255)
T ss_pred cccch-------------------------------hhhcCHHHHHHhhhhhhhcCCCh---------hhHHHHhcCccc
Confidence 33211 11122223334444455554443 111122223333
Q ss_pred CCcceEEEeccC--CCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129 270 TNLEQFCIKGYG--GMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS 329 (962)
Q Consensus 270 ~~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 329 (962)
+.|+.|.+++.. ...+|..+. .+.+|..++++.|.+...+..+-.+++|+.|+|++|.
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld--~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLD--DLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchh--hhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc
Confidence 444455555443 224555554 3666666666666543333345566666666666653
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=7.1e-24 Score=221.59 Aligned_cols=341 Identities=19% Similarity=0.272 Sum_probs=181.8
Q ss_pred CCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCcc-ccCcc
Q 002129 466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLV-KLPQS 544 (962)
Q Consensus 466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~-~~~~~ 544 (962)
.+++++.|.+....+..+. .-++.+.+|++|.+.+ +++.++..+ +..+ |.|+.+.+++|+.-. .+|..
T Consensus 30 qMt~~~WLkLnrt~L~~vP----eEL~~lqkLEHLs~~H-N~L~~vhGE-----Ls~L-p~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVP----EELSRLQKLEHLSMAH-NQLISVHGE-----LSDL-PRLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred HhhheeEEEechhhhhhCh----HHHHHHhhhhhhhhhh-hhhHhhhhh-----hccc-hhhHHHhhhccccccCCCCch
Confidence 3556666666655444332 2245566666666666 555544332 3333 666666666655433 46666
Q ss_pred CCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCC-CCCCC
Q 002129 545 SLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV-QLPPS 622 (962)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~ 622 (962)
+..+.-|..|+|++ +.++.+| .+....++-.|++++|. ++.||...+ .++..|-.|++++ +.+..+|+. ..+..
T Consensus 99 iF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf-inLtDLLfLDLS~-NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF-INLTDLLFLDLSN-NRLEMLPPQIRRLSM 174 (1255)
T ss_pred hcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCc-cccCCchHH-HhhHhHhhhcccc-chhhhcCHHHHHHhh
Confidence 66667777777776 3455555 34555666677777666 666666655 5566666677776 455555543 33345
Q ss_pred CceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCC
Q 002129 623 LKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSK 702 (962)
Q Consensus 623 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~ 702 (962)
|++|.+++++- ....+...|.+ ++|+.|++++...
T Consensus 175 LqtL~Ls~NPL-----------------------~hfQLrQLPsm----------------------tsL~vLhms~TqR 209 (1255)
T KOG0444|consen 175 LQTLKLSNNPL-----------------------NHFQLRQLPSM----------------------TSLSVLHMSNTQR 209 (1255)
T ss_pred hhhhhcCCChh-----------------------hHHHHhcCccc----------------------hhhhhhhcccccc
Confidence 55565555541 11111111111 4555555555433
Q ss_pred c-hhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccc
Q 002129 703 L-ESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKG 781 (962)
Q Consensus 703 ~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 781 (962)
+ ..+|.++..+.+|..+++|.|+ +..+|+.+.++++|+.|+|++| .++.+..+...+.+|++|+++.|+ +..+|..
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~a 286 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDA 286 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHH
Confidence 2 3355666666666666666543 3345566666666666666666 555555444445566666666665 5566666
Q ss_pred cCCCcccceeecCCCCC-CCCCCCC-CCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCC
Q 002129 782 LHNLKSLQELRIGKGVA-LPSLEED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKAD 859 (962)
Q Consensus 782 ~~~l~~L~~L~l~~~~~-l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 859 (962)
+..++.|+.|.+.+|.. ...+|.+ +.+..|+++..++|..... + ..+..++.|+.|.++.| .+..+|+.+
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV-P----EglcRC~kL~kL~L~~N--rLiTLPeaI- 358 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV-P----EGLCRCVKLQKLKLDHN--RLITLPEAI- 358 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC-c----hhhhhhHHHHHhccccc--ceeechhhh-
Confidence 66666666666665531 1223332 3344444444444433221 1 23445555555555553 344444433
Q ss_pred CCCCCccccCCCccceEeeccCCCCc
Q 002129 860 DKGSGTVLPLPASLTYLRIEGFPNLE 885 (962)
Q Consensus 860 ~~~~~~~~~~~~~L~~L~l~~~~~l~ 885 (962)
..++-|+.|++.++|++.
T Consensus 359 --------HlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 359 --------HLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred --------hhcCCcceeeccCCcCcc
Confidence 355555555555555544
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.86 E-value=5.1e-22 Score=232.38 Aligned_cols=187 Identities=28% Similarity=0.352 Sum_probs=143.7
Q ss_pred CcchHHHHHHHHhc-----cceEEEecc--cccccccccCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCC
Q 002129 1 MHDLVSDLAQWAAG-----EMYFTMEYT--SEVNKQQRFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSK 73 (962)
Q Consensus 1 mHdlv~d~a~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~ 73 (962)
|||||||||.|+|+ +|.+++..+ .........+..+||+++.++.+... ..-..+++|++|.+.++..
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~-- 557 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSD-- 557 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccceEEEeecch--
Confidence 99999999999999 666665542 11112233457899999999876543 3445677999999988641
Q ss_pred CCCCCcccccccc-cCCcccEEEecCCC-CcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhcc
Q 002129 74 PGYLAPSMLPKLL-KLQSLRVFSLRGYR-ILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKL 151 (962)
Q Consensus 74 ~~~~~~~~~~~~~-~l~~L~~L~L~~~~-i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~l 151 (962)
-...++.++| .++.||||||++|. +.++|++++.|.+||||+|+++.|..+|.++++|+.|.+|++.++.....+
T Consensus 558 ---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 558 ---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred ---hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc
Confidence 1456677788 89999999999876 789999999999999999999999999999999999999999997777777
Q ss_pred chhhhccCCCcEEeccCCcccccccccccccccccccceeeecCC
Q 002129 152 CADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKD 196 (962)
Q Consensus 152 p~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~ 196 (962)
|..+..|.+||+|.+.... ...-...++.+.+|++|..+.....
T Consensus 635 ~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 635 PGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecc
Confidence 7667789999999998764 2222223555666666655444333
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=2.6e-17 Score=164.30 Aligned_cols=116 Identities=26% Similarity=0.284 Sum_probs=98.7
Q ss_pred Ccccccccc-cCCcccEEEecCCCCccc-CccccCCCcCcEEEcCC-CcccccChh-hhccCCccEEecCCCcchhccch
Q 002129 78 APSMLPKLL-KLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSG-TEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA 153 (962)
Q Consensus 78 ~~~~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~-n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~ 153 (962)
...+|+..| .+++||.|||++|+|+.| |++|.+|..|-.|-+-+ |+|+++|+. |++|..|+.|.+.-|...-...+
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 678899999 999999999999999988 88999999888877776 899999976 99999999999988544444456
Q ss_pred hhhccCCCcEEeccCCccccccccc-ccccccccccceeeec
Q 002129 154 DMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFVVG 194 (962)
Q Consensus 154 ~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~ 194 (962)
.+..|.+|..|.+.+|. ++.++.+ +..+.+++++.+-...
T Consensus 159 al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 78999999999999998 8888885 8999999988664443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=5.7e-15 Score=169.49 Aligned_cols=214 Identities=30% Similarity=0.372 Sum_probs=121.6
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
..-..|+++++. ++.+|..+. ++|+.|++.+| .++.+|. .+++|++|++++|. ++.+|. ..++|++|+
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~-----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccC-----cccccceee
Confidence 446678888874 456776554 47888888874 5666764 36778888888875 666663 236777777
Q ss_pred ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129 605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE 684 (962)
Q Consensus 605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 684 (962)
+++| .++.++. .+.+|+.|++.+|. ++.+|
T Consensus 269 Ls~N-~L~~Lp~--lp~~L~~L~Ls~N~-Lt~LP---------------------------------------------- 298 (788)
T PRK15387 269 IFSN-PLTHLPA--LPSGLCKLWIFGNQ-LTSLP---------------------------------------------- 298 (788)
T ss_pred ccCC-chhhhhh--chhhcCEEECcCCc-ccccc----------------------------------------------
Confidence 7774 3555543 34456666655542 22222
Q ss_pred cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccc
Q 002129 685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKL 764 (962)
Q Consensus 685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L 764 (962)
..|++|+.|++++|.+.+ +|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++| .+..+|.. .++|
T Consensus 299 --~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L 364 (788)
T PRK15387 299 --VLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDN-QLASLPTL---PSEL 364 (788)
T ss_pred --ccccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCC-ccCCCCCC---Cccc
Confidence 011567777777775443 3321 234666666665543 34431 235677777766 55556542 1356
Q ss_pred cccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchh
Q 002129 765 AMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNME 821 (962)
Q Consensus 765 ~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~ 821 (962)
+.|++++|. +..+|.. ..+|+.|++++| .+..+|. .+++|+.|++++|.+
T Consensus 365 ~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N-~Lt~LP~--l~s~L~~LdLS~N~L 414 (788)
T PRK15387 365 YKLWAYNNR-LTSLPAL---PSGLKELIVSGN-RLTSLPV--LPSELKELMVSGNRL 414 (788)
T ss_pred ceehhhccc-cccCccc---ccccceEEecCC-cccCCCC--cccCCCEEEccCCcC
Confidence 666666665 3345532 235666666665 3444443 234455555555543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=7.5e-15 Score=168.52 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=54.0
Q ss_pred CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccC
Q 002129 89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSN 168 (962)
Q Consensus 89 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 168 (962)
..-.+|+|++++++.+|..+.. +|+.|++++|+++.+|.. +++|++|++++| .+..+|.. ..+|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhc--CCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 4466788888888888877653 788888888888887752 467777777774 56666643 35667777777
Q ss_pred Cccccccc
Q 002129 169 TKSLEEMP 176 (962)
Q Consensus 169 n~~~~~lp 176 (962)
|. +..+|
T Consensus 272 N~-L~~Lp 278 (788)
T PRK15387 272 NP-LTHLP 278 (788)
T ss_pred Cc-hhhhh
Confidence 76 44444
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=3.6e-17 Score=163.38 Aligned_cols=98 Identities=24% Similarity=0.343 Sum_probs=65.5
Q ss_pred cEEEecCCCCcccC-ccccCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchh-hhccCCCcEEeccC
Q 002129 92 RVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSN 168 (962)
Q Consensus 92 ~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~ 168 (962)
..++|..|+|+.|| .+|+.+++||.||||+|.|+.| |..|..|..|..|-+.+++.++.+|.. |++|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 45667777777775 4577777777777777777766 556777777777766666677777754 67777777777776
Q ss_pred Cccccccccc-ccccccccccce
Q 002129 169 TKSLEEMPVG-IGRLTCLQTLCS 190 (962)
Q Consensus 169 n~~~~~lp~~-~~~L~~L~~L~~ 190 (962)
|+ +.-++.+ +..|++|..|.+
T Consensus 150 n~-i~Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 150 NH-INCIRQDALRDLPSLSLLSL 171 (498)
T ss_pred hh-hcchhHHHHHHhhhcchhcc
Confidence 66 4444433 555666555543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=5.4e-17 Score=142.79 Aligned_cols=128 Identities=25% Similarity=0.362 Sum_probs=75.7
Q ss_pred ccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhh
Q 002129 53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVS 132 (962)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~ 132 (962)
+.+..+++...|.+..+. ...+||.+..+++|++|++.+|+|+++|.+++.++.||.|+++-|++..+|..|+
T Consensus 27 ~gLf~~s~ITrLtLSHNK-------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK-------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred ccccchhhhhhhhcccCc-------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 333444455445444332 4455666666666666666666666666666666666666666666666666666
Q ss_pred ccCCccEEecCCCcch-hccchhhhccCCCcEEeccCCccccccccccccccccccc
Q 002129 133 KLYNLHSLLLEDCDRL-EKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (962)
Q Consensus 133 ~L~~L~~L~L~~~~~~-~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L 188 (962)
.++.|++||+++|+.. ..+|..|..|+.|+.|++++|. ...+|.++++|++||.|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence 6666666666664433 3456566666666666666665 55666666666666655
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.50 E-value=4.6e-14 Score=165.99 Aligned_cols=133 Identities=26% Similarity=0.298 Sum_probs=105.8
Q ss_pred ccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCC--CcccCcc-ccCCCcCcEEEcCCC-cccccC
Q 002129 53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYR--ILELPDS-VGDLRYLRYLNLSGT-EIRTLP 128 (962)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--i~~lp~~-~~~L~~L~~L~Ls~n-~i~~lp 128 (962)
+...+....|...+..+. ....+.-...+.|++|-+.+|. +..++.. |..++.|++|||++| .+.++|
T Consensus 517 ~~~~~~~~~rr~s~~~~~--------~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNK--------IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccchhheeEEEEeccc--------hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 344556677887776653 1222222345589999999997 6677654 788999999999988 678999
Q ss_pred hhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeec
Q 002129 129 ESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVG 194 (962)
Q Consensus 129 ~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~ 194 (962)
++|+.|.+||+|++++ +.+..+|.++++|++|.+|++..+.....+|.....|.+||+|.++...
T Consensus 589 ~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999999999999999 7899999999999999999999988666666667779999999776644
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=6.9e-16 Score=135.89 Aligned_cols=146 Identities=23% Similarity=0.337 Sum_probs=132.7
Q ss_pred CceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCc
Q 002129 34 RYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRY 113 (962)
Q Consensus 34 ~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~ 113 (962)
..++++.++.|.+..+ ++.+.++.+|++|.++.+. ..++|.++..+++||.|+++-|++..+|..|+.++.
T Consensus 33 s~ITrLtLSHNKl~~v--ppnia~l~nlevln~~nnq-------ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV--PPNIAELKNLEVLNLSNNQ-------IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred hhhhhhhcccCceeec--CCcHHHhhhhhhhhcccch-------hhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 4688888998877654 5788899999999887764 688999999999999999999999999999999999
Q ss_pred CcEEEcCCCccc--ccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccce
Q 002129 114 LRYLNLSGTEIR--TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCS 190 (962)
Q Consensus 114 L~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~ 190 (962)
|++|||++|++. .+|..|..++.|+.|+++. +..+.+|..+++|++|+.|.+.+|. +-++|.+++.|+.|++|++
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhc
Confidence 999999999987 6899999999999999999 5789999999999999999999999 8889999999999999964
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.1e-13 Score=160.38 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=66.6
Q ss_pred CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccC
Q 002129 89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSN 168 (962)
Q Consensus 89 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 168 (962)
.+...|++++++++.+|..+. .+|+.|+|++|+++.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 457889999999999987764 479999999999999988764 58999999985 5778887664 4789999999
Q ss_pred Ccccccccccc
Q 002129 169 TKSLEEMPVGI 179 (962)
Q Consensus 169 n~~~~~lp~~~ 179 (962)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 88 66777654
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=2.1e-13 Score=158.04 Aligned_cols=202 Identities=24% Similarity=0.360 Sum_probs=105.6
Q ss_pred CCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCCceEEe
Q 002129 549 SSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKI 628 (962)
Q Consensus 549 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 628 (962)
.+...|+++++ .++.+|.. .++.|+.|++++|. ++.+|... .++|++|++++| .++.+|. ..+++|+.|++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP~~l----~~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPAC-IPEQITTLILDNNE-LKSLPENL----QGNIKTLYANSN-QLTSIPA-TLPDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCC-CcCcCCcc-cccCCcEEEecCCC-CCcCChhh----ccCCCEEECCCC-ccccCCh-hhhccccEEEC
Confidence 35678888884 56677742 35789999999886 77777654 257888888874 4555554 23345555555
Q ss_pred cccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchhhhh
Q 002129 629 CHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAE 708 (962)
Q Consensus 629 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~ 708 (962)
++|. +..+|. .++.+|+.|++++|.+. .+|.
T Consensus 249 s~N~-L~~LP~-----------------------------------------------~l~s~L~~L~Ls~N~L~-~LP~ 279 (754)
T PRK15370 249 SINR-ITELPE-----------------------------------------------RLPSALQSLDLFHNKIS-CLPE 279 (754)
T ss_pred cCCc-cCcCCh-----------------------------------------------hHhCCCCEEECcCCccC-cccc
Confidence 5542 222220 01145666666655433 3443
Q ss_pred hccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCccc
Q 002129 709 MLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSL 788 (962)
Q Consensus 709 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L 788 (962)
.+. ++|+.|++++|.+. .+|..+. ++|+.|++++| .+..+|.... ++|+.|++++|. +..+|..+. ++|
T Consensus 280 ~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l~--~sL 348 (754)
T PRK15370 280 NLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSN-SLTALPETLP--PGLKTLEAGENA-LTSLPASLP--PEL 348 (754)
T ss_pred ccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCC-ccccCCcccc--ccceeccccCCc-cccCChhhc--Ccc
Confidence 332 35566666555432 2333221 34555555555 3444443222 355555555554 333443331 455
Q ss_pred ceeecCCCCCCCCCCCCCCCCccceEeecCchh
Q 002129 789 QELRIGKGVALPSLEEDGLPTNLHVLLINGNME 821 (962)
Q Consensus 789 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~ 821 (962)
+.|++++| .+..+|. ..+++|++|++++|.+
T Consensus 349 ~~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~N~L 379 (754)
T PRK15370 349 QVLDVSKN-QITVLPE-TLPPTITTLDVSRNAL 379 (754)
T ss_pred cEEECCCC-CCCcCCh-hhcCCcCEEECCCCcC
Confidence 55555555 3333332 2234455555555443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=8.8e-12 Score=135.04 Aligned_cols=107 Identities=21% Similarity=0.188 Sum_probs=49.6
Q ss_pred CccEEEecCCCCch----hhhhhccCCCCcceEeecCCccccc----cCccccCCCCccEEEcccCCCccc----CCCCC
Q 002129 691 SLKLLLVWGCSKLE----SIAEMLDNNTSLEKINISGCGNLQT----LPSGLHNLCQLQEISIASCGNLVS----SPEGG 758 (962)
Q Consensus 691 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~~----~~~~~ 758 (962)
.|++|++++|...+ .++..+..+++|+.|++++|.+... +...+..+++|++|++++|+.-.. +....
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~ 245 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL 245 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence 45555555555442 1223344445566666665544321 223344455666666666532110 00000
Q ss_pred -CCccccccccccccccc----ccCccccCCCcccceeecCCCC
Q 002129 759 -LPCAKLAMLAIYNCKRL----EALPKGLHNLKSLQELRIGKGV 797 (962)
Q Consensus 759 -~~~~~L~~L~l~~c~~l----~~~~~~~~~l~~L~~L~l~~~~ 797 (962)
...+.|+.|++++|... ..+...+..+++|+++++++|.
T Consensus 246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 01246666666666532 1222334445666667766663
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.11 E-value=2.7e-12 Score=130.17 Aligned_cols=275 Identities=16% Similarity=0.267 Sum_probs=150.3
Q ss_pred cceeecccccCccc--cCccCCCCCCccEEEecCCCCccccC---CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCcc
Q 002129 527 LEYLRLSYCEGLVK--LPQSSLSLSSLREIEIYGCRSLVSFP---EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLE 601 (962)
Q Consensus 527 L~~L~ls~~~~l~~--~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 601 (962)
|+.|.+++|..... +-.....+|++++|.+.+|..+++.. -..++++|+++++..|..++.......+..+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 55555555544332 22234457777777777777666433 13457788888888888787776665668889999
Q ss_pred EEEecCCCCCCcccCC---CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccc
Q 002129 602 ILEISGCDSLTYIAGV---QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPA 678 (962)
Q Consensus 602 ~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 678 (962)
+++++.|+.++.-.-. .....++.+...+|..++.-.. ..
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l--------------------~~----------------- 262 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL--------------------LK----------------- 262 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH--------------------HH-----------------
Confidence 9999999877761111 1223344454455543321110 00
Q ss_pred cccccccCCCccCccEEEecCCCCchh--hhhhccCCCCcceEeecCCccccccC--ccccCCCCccEEEcccCCCcccC
Q 002129 679 TLESLEVGNLPPSLKLLLVWGCSKLES--IAEMLDNNTSLEKINISGCGNLQTLP--SGLHNLCQLQEISIASCGNLVSS 754 (962)
Q Consensus 679 ~l~~l~~~~l~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~L~~~~~l~~~ 754 (962)
. +.-...+.++++.+|..++. +...-.++..|+.|+.++|...++.+ +--.+.++|+.|.++.|+.++..
T Consensus 263 ----~--~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 263 ----A--AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred ----H--hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 0 00002344444555544433 23444556666666666666544321 11234566666666666655443
Q ss_pred CCC--CCCccccccccccccccccc--CccccCCCcccceeecCCCCCCCCC-----CCC-CCCCccceEeecCchhhhH
Q 002129 755 PEG--GLPCAKLAMLAIYNCKRLEA--LPKGLHNLKSLQELRIGKGVALPSL-----EED-GLPTNLHVLLINGNMEIWK 824 (962)
Q Consensus 755 ~~~--~~~~~~L~~L~l~~c~~l~~--~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~-~~~~~L~~L~l~~~~~~~~ 824 (962)
... ...++.|+.+++.+|..... +-..-.+++.|+.+.+++|..+++. ... .....|+.+.+++|+.+..
T Consensus 337 ~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 337 GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 222 23356677777766653321 1122245667777777776655443 111 2235566677777776665
Q ss_pred HHHhccccccccCccceeecccC
Q 002129 825 SMIERGRGFHRFSSLRQLTIMNC 847 (962)
Q Consensus 825 ~~~~~~~~~~~l~~L~~L~l~~~ 847 (962)
... ..+..+++|+.+++.+|
T Consensus 417 ~~L---e~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 417 ATL---EHLSICRNLERIELIDC 436 (483)
T ss_pred HHH---HHHhhCcccceeeeech
Confidence 443 35666677777777765
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=1.6e-11 Score=133.09 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=61.5
Q ss_pred cCccEEEecCCCCch----hhhhhccCCCCcceEeecCCccccc----cCccccCCCCccEEEcccCCCcc----cCCCC
Q 002129 690 PSLKLLLVWGCSKLE----SIAEMLDNNTSLEKINISGCGNLQT----LPSGLHNLCQLQEISIASCGNLV----SSPEG 757 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~----~~~~~ 757 (962)
++|++|++++|.+.+ .++..+..+++|++|++++|...+. ++..+..+++|++|++++|..-. .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 578888888887663 2445667778888888888876532 33344556788888888874221 11122
Q ss_pred CCCcccccccccccccccccCcccc-----CCCcccceeecCCC
Q 002129 758 GLPCAKLAMLAIYNCKRLEALPKGL-----HNLKSLQELRIGKG 796 (962)
Q Consensus 758 ~~~~~~L~~L~l~~c~~l~~~~~~~-----~~l~~L~~L~l~~~ 796 (962)
...+++|++|++++|+........+ ...+.|++|++++|
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 2234566666666665332111111 12356666666665
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.99 E-value=1.7e-11 Score=124.53 Aligned_cols=142 Identities=19% Similarity=0.300 Sum_probs=95.8
Q ss_pred ccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccc--cCccCCCCCCccEEEecCCCCccccC---
Q 002129 492 QDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVK--LPQSSLSLSSLREIEIYGCRSLVSFP--- 566 (962)
Q Consensus 492 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~--~~~~~~~l~~L~~L~l~~~~~l~~~~--- 566 (962)
..+++|++|++..|..+++..... +..-+++|++|+++-|+.+.. +.....++..++.+.+.+|..++.-.
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~----la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~ 262 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKY----LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLK 262 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHH----HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHH
Confidence 567888888888888877765542 333358888888888877663 33344566667777777776554211
Q ss_pred CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCC---CCCCCCceEEecccCCCccc
Q 002129 567 EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV---QLPPSLKRLKICHCDNIRTL 637 (962)
Q Consensus 567 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~~l 637 (962)
..+....+.++++..|..+++......+..+..|+.|..++|..++..+.. +..++|+.+.+.+|..+++.
T Consensus 263 ~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 263 AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 123455577777778887877765555567788888888888877765432 55578888888888765543
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=5.9e-10 Score=104.71 Aligned_cols=132 Identities=25% Similarity=0.277 Sum_probs=56.0
Q ss_pred ccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhh
Q 002129 53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV 131 (962)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i 131 (962)
+.+.+..++|.|.+.++. ......+. .+.+|++|+|++|.|+.+ +.+..+++|++|++++|.|+.+++.+
T Consensus 13 ~~~~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccc--------cccccchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccch
Confidence 444566677888776653 22334565 678999999999999988 46888999999999999999997665
Q ss_pred -hccCCccEEecCCCcchhccc--hhhhccCCCcEEeccCCcccccccc----cccccccccccceeeecC
Q 002129 132 -SKLYNLHSLLLEDCDRLEKLC--ADMGNLVKLHHLKNSNTKSLEEMPV----GIGRLTCLQTLCSFVVGK 195 (962)
Q Consensus 132 -~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~~~~~lp~----~~~~L~~L~~L~~~~~~~ 195 (962)
..+++|++|++++| .+..+- ..++.+++|++|++.+|. +...+. -+..+++|+.|+...+..
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 46899999999985 555543 457889999999999998 554443 277899999997655543
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=1.3e-10 Score=122.60 Aligned_cols=107 Identities=27% Similarity=0.488 Sum_probs=66.5
Q ss_pred cccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhcc
Q 002129 79 PSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNL 158 (962)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 158 (962)
..+|.++..+..|..+.|..|.+..+|.+++++..|.||||+.|++..+|..++.|+ |++|-+++ ++++.+|++|+.+
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLL 165 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccc
Confidence 344555555556666666666666666666666666666666666666666655554 66666665 4566666666666
Q ss_pred CCCcEEeccCCccccccccccccccccccc
Q 002129 159 VKLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (962)
Q Consensus 159 ~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L 188 (962)
..|.+||.+.|. +..+|..++.+.+|+.|
T Consensus 166 ~tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 666666666666 56666666666666655
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=2.1e-09 Score=101.02 Aligned_cols=103 Identities=28% Similarity=0.398 Sum_probs=37.8
Q ss_pred ccCCcccEEEecCCCCcccCcccc-CCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhh-hccCCCcE
Q 002129 86 LKLQSLRVFSLRGYRILELPDSVG-DLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADM-GNLVKLHH 163 (962)
Q Consensus 86 ~~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~ 163 (962)
.+..++|.|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++ |.+..+++.+ ..+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence 3566789999999999988 4565 6899999999999999995 588999999999999 5787887666 47999999
Q ss_pred EeccCCcccccccc--cccccccccccceee
Q 002129 164 LKNSNTKSLEEMPV--GIGRLTCLQTLCSFV 192 (962)
Q Consensus 164 L~l~~n~~~~~lp~--~~~~L~~L~~L~~~~ 192 (962)
|++++|+ +..+.. .++.+++|+.|++..
T Consensus 93 L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 93 LYLSNNK-ISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT
T ss_pred EECcCCc-CCChHHhHHHHcCCCcceeeccC
Confidence 9999998 665532 255566666665443
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=6.3e-09 Score=115.92 Aligned_cols=106 Identities=32% Similarity=0.461 Sum_probs=87.3
Q ss_pred ccccCCcccEEEecCCCCcccCccccCCC-cCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCc
Q 002129 84 KLLKLQSLRVFSLRGYRILELPDSVGDLR-YLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLH 162 (962)
Q Consensus 84 ~~~~l~~L~~L~L~~~~i~~lp~~~~~L~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 162 (962)
.+..++.++.|++.+|.++.+|.....+. +|++|++++|.+..+|..++.+++|+.|++++ +.+..+|...+.+.+|+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhh
Confidence 34466788899999999998888888885 89999999999998887888999999999998 56888887777888999
Q ss_pred EEeccCCccccccccccccccccccccee
Q 002129 163 HLKNSNTKSLEEMPVGIGRLTCLQTLCSF 191 (962)
Q Consensus 163 ~L~l~~n~~~~~lp~~~~~L~~L~~L~~~ 191 (962)
.|++++|. +..+|..++.+..|++|.+.
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 99999988 88888877777777777543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.7e-09 Score=109.38 Aligned_cols=133 Identities=20% Similarity=0.114 Sum_probs=58.3
Q ss_pred cCccEEEecCCCCchh-hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCC--CCCCcccccc
Q 002129 690 PSLKLLLVWGCSKLES-IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPE--GGLPCAKLAM 766 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~~L~~ 766 (962)
+.|+.|.++.|..... +-..+..+|+|+.|++++|.....-.....-+..|++|+|++|+.+. ++. ....+|.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 3444444555544422 22334445555555555553222111222334555555555553322 221 1233455555
Q ss_pred cccccccccc-cCccc-----cCCCcccceeecCCCCC--CCCCCCCCCCCccceEeecCchhhh
Q 002129 767 LAIYNCKRLE-ALPKG-----LHNLKSLQELRIGKGVA--LPSLEEDGLPTNLHVLLINGNMEIW 823 (962)
Q Consensus 767 L~l~~c~~l~-~~~~~-----~~~l~~L~~L~l~~~~~--l~~~~~~~~~~~L~~L~l~~~~~~~ 823 (962)
|.++.|.... .+|+. ...+++|++|++..|+. ...+.......+|+.|.+..|++..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 5555554221 11221 23456666666666532 2222223444555555555555443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.3e-09 Score=108.78 Aligned_cols=135 Identities=19% Similarity=0.135 Sum_probs=63.2
Q ss_pred ccccccccccccccc-cCccccCCCcccceeecCCCCCC-CCCCCCCCCCccceEeecCchhhhHHHHhccccccccCcc
Q 002129 762 AKLAMLAIYNCKRLE-ALPKGLHNLKSLQELRIGKGVAL-PSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSL 839 (962)
Q Consensus 762 ~~L~~L~l~~c~~l~-~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 839 (962)
+.|+.|.+++|.... .+......+|+|+.|++.+|..+ ..-.....++.|++|++++|+++..... .....+|.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---YKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---cccccccch
Confidence 344444444444321 11122334555555555555321 1111123445555555555555443211 335666677
Q ss_pred ceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCccccc--ccccCCCcCeEeccC
Q 002129 840 RQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTS--SIVDLQNLTGLVLGN 904 (962)
Q Consensus 840 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~ 904 (962)
+.|+++.|......+|+.. .......+++|++|++.. +.++..++ .+..+++|+.|.+..
T Consensus 274 ~~Lnls~tgi~si~~~d~~----s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVE----SLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred hhhhccccCcchhcCCCcc----chhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccc
Confidence 7777776654444444321 111123567777777777 34444332 234455566655443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=3.6e-08 Score=109.84 Aligned_cols=126 Identities=25% Similarity=0.354 Sum_probs=107.0
Q ss_pred ccCCCceeEEeeccccCCCCCCCCcccccccccCC-cccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhc
Q 002129 55 LYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQ-SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSK 133 (962)
Q Consensus 55 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~ 133 (962)
....+.+..|.+..+. ..++++....++ +|+.|++++|.+..+|..++.+++|+.|++++|+++++|...+.
T Consensus 112 ~~~~~~l~~L~l~~n~-------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLDNNN-------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred hhcccceeEEecCCcc-------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 3455678888776654 566777777775 99999999999999999999999999999999999999998889
Q ss_pred cCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccc
Q 002129 134 LYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLC 189 (962)
Q Consensus 134 L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~ 189 (962)
+.+|+.|++++ +.+..+|..++.+..|++|.+++|. ....+..++++.++..|.
T Consensus 185 ~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 185 LSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence 99999999999 6799999988889999999999997 556666677777766663
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.58 E-value=5.6e-08 Score=74.77 Aligned_cols=57 Identities=32% Similarity=0.503 Sum_probs=38.3
Q ss_pred CcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCC
Q 002129 89 QSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDC 145 (962)
Q Consensus 89 ~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~ 145 (962)
++|++|++++|+++.+| ..|.++++|++|++++|.++.+|+ .|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35677777777777665 356677777777777777776653 4667777777777664
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.1e-07 Score=110.60 Aligned_cols=100 Identities=22% Similarity=0.317 Sum_probs=88.2
Q ss_pred cccEEEecCCCCc-ccCccccCCCcCcEEEcCCCccc-ccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEecc
Q 002129 90 SLRVFSLRGYRIL-ELPDSVGDLRYLRYLNLSGTEIR-TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNS 167 (962)
Q Consensus 90 ~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 167 (962)
.++.|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|+.+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4888999999988 78999999999999999999997 889999999999999999988778999999999999999999
Q ss_pred CCccccccccccccc-ccccccc
Q 002129 168 NTKSLEEMPVGIGRL-TCLQTLC 189 (962)
Q Consensus 168 ~n~~~~~lp~~~~~L-~~L~~L~ 189 (962)
+|.+.+.+|..++.+ .++..++
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCcccccCChHHhhccccCceEE
Confidence 999778999887653 3444443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.6e-08 Score=98.30 Aligned_cols=101 Identities=34% Similarity=0.440 Sum_probs=52.1
Q ss_pred cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCC---------------------
Q 002129 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDC--------------------- 145 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~--------------------- 145 (962)
-++.|+.|||++|.|+.+-+++.-++.+|.|++|+|.|..+-. +..|++|+.|||++|
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 3445555555555555555555555555555555555554422 555555555555553
Q ss_pred -cchhccchhhhccCCCcEEeccCCccccccc--ccccccccccccce
Q 002129 146 -DRLEKLCADMGNLVKLHHLKNSNTKSLEEMP--VGIGRLTCLQTLCS 190 (962)
Q Consensus 146 -~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~~ 190 (962)
+.++.+ .++++|.+|..||+++|+ ++.+- .+||+|+.|+++.+
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhh
Confidence 233333 245555555666666655 44332 23555555555543
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.52 E-value=5.3e-07 Score=95.29 Aligned_cols=93 Identities=30% Similarity=0.589 Sum_probs=52.7
Q ss_pred ccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccc
Q 002129 710 LDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQ 789 (962)
Q Consensus 710 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~ 789 (962)
+..+.+++.|++++| .++.+|. -.++|++|.+++|..+..+|... + ++|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P-~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI-P-EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh-h-hhhhheEccCccccccccc------ccc
Confidence 445677777777777 4555552 12357777777777777777533 2 3777777777765655553 345
Q ss_pred eeecCCCCCCCCCCCCCCCCccceEeec
Q 002129 790 ELRIGKGVALPSLEEDGLPTNLHVLLIN 817 (962)
Q Consensus 790 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 817 (962)
.|++.++ ....++ .+|++|+.|.+.
T Consensus 116 ~L~L~~n-~~~~L~--~LPssLk~L~I~ 140 (426)
T PRK15386 116 SLEIKGS-ATDSIK--NVPNGLTSLSIN 140 (426)
T ss_pred eEEeCCC-CCcccc--cCcchHhheecc
Confidence 5555432 222221 233455555553
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.48 E-value=2.1e-08 Score=106.25 Aligned_cols=108 Identities=28% Similarity=0.402 Sum_probs=67.6
Q ss_pred ccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccC
Q 002129 80 SMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLV 159 (962)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 159 (962)
.+|..++.+ -|++|-+++|+++.+|+.++.+.+|..||.+.|.+..+|..++.|..|+.|.++. +.+..+|++++ --
T Consensus 135 ~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~-~L 211 (722)
T KOG0532|consen 135 HLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELC-SL 211 (722)
T ss_pred cCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHh-CC
Confidence 334444433 2566666666666666666666666666666666666666666666666666666 34556666666 33
Q ss_pred CCcEEeccCCccccccccccccccccccccee
Q 002129 160 KLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSF 191 (962)
Q Consensus 160 ~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~ 191 (962)
.|..||++.|+ +..+|..|.+|+.||+|.+-
T Consensus 212 pLi~lDfScNk-is~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 212 PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred ceeeeecccCc-eeecchhhhhhhhheeeeec
Confidence 46667777776 67777777777777777443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=2.2e-07 Score=71.47 Aligned_cols=58 Identities=33% Similarity=0.409 Sum_probs=51.1
Q ss_pred CcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccc-hhhhccCCCcEEeccCCc
Q 002129 112 RYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTK 170 (962)
Q Consensus 112 ~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~ 170 (962)
++|++|++++|+++.+|. .|..+++|++|++++| .+..+| ..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 5899999999999985 566665 568999999999999997
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.42 E-value=9.7e-07 Score=93.38 Aligned_cols=57 Identities=30% Similarity=0.634 Sum_probs=26.7
Q ss_pred CCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCC
Q 002129 549 SSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLT 612 (962)
Q Consensus 549 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 612 (962)
.+++.|++++| .++.+| ..+++|+.|.+++|..++.+|..+ .++|++|++++|..+.
T Consensus 52 ~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEIS 108 (426)
T ss_pred cCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccc
Confidence 34455555554 444444 234445555555555554444321 1345555555554443
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=5.6e-08 Score=94.59 Aligned_cols=132 Identities=24% Similarity=0.222 Sum_probs=89.5
Q ss_pred ccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccc
Q 002129 108 VGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQT 187 (962)
Q Consensus 108 ~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~ 187 (962)
+..-+.|+.||||+|.|+.+-+++.-++.++.|++++| .+..+- .+..|.+|++||+++|. +.++-.+-.+|.+.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEee
Confidence 34456799999999999999999999999999999995 565553 48899999999999998 6666555566777777
Q ss_pred cceeeecCCCCCCcccccccccccceeEEecCCCCcchhhh-hhhccCCCCCCCcEEEEeecCC
Q 002129 188 LCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDA-EDAQLDRKENLKELWLRWTLYG 250 (962)
Q Consensus 188 L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 250 (962)
|.+.. ..++.++.|..|. ++.--.+... ++... ....+.+++.|+.+.+.+|...
T Consensus 357 L~La~------N~iE~LSGL~KLY-SLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQ------NKIETLSGLRKLY-SLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhh------hhHhhhhhhHhhh-hheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 75533 2334444444333 1111111111 11111 1235788999999999877643
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=7.3e-07 Score=103.90 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=98.6
Q ss_pred CccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccc
Q 002129 691 SLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIY 770 (962)
Q Consensus 691 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~ 770 (962)
.++.|+|++|...+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|...+.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999988999999999999999999997777888888888999999999
Q ss_pred cccccccCccccCCC-cccceeecCCCCCCCCCC
Q 002129 771 NCKRLEALPKGLHNL-KSLQELRIGKGVALPSLE 803 (962)
Q Consensus 771 ~c~~l~~~~~~~~~l-~~L~~L~l~~~~~l~~~~ 803 (962)
+|...+.+|..+... .++..+++.+|+.+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999888999877653 567788898887665544
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=1.4e-07 Score=94.39 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=18.4
Q ss_pred cCccEEEecCCCCchh----hhhhccCCCCcceEeecC
Q 002129 690 PSLKLLLVWGCSKLES----IAEMLDNNTSLEKINISG 723 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~ 723 (962)
.+++++++++|.+-.. +...+.+.++|+..+++.
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence 5667777777665433 223344455555555553
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=9.1e-07 Score=61.78 Aligned_cols=40 Identities=30% Similarity=0.486 Sum_probs=26.3
Q ss_pred CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccC
Q 002129 89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLP 128 (962)
Q Consensus 89 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp 128 (962)
++|++|++++|+|+.+|..+++|++|++|++++|+|+++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3567777777777777666777777777777777776654
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.25 E-value=1.7e-07 Score=93.82 Aligned_cols=88 Identities=23% Similarity=0.193 Sum_probs=54.2
Q ss_pred cccccCCcccEEEecCCCCc-----ccCccccCCCcCcEEEcCCCcc----cccChh-------hhccCCccEEecCCCc
Q 002129 83 PKLLKLQSLRVFSLRGYRIL-----ELPDSVGDLRYLRYLNLSGTEI----RTLPES-------VSKLYNLHSLLLEDCD 146 (962)
Q Consensus 83 ~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~n~i----~~lp~~-------i~~L~~L~~L~L~~~~ 146 (962)
+..-.+..++.++|++|.+. .+-+.+.+.++||.-++|.--. .++|+. +...++|++||||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 33337778888888888876 2445567777888888876522 245543 2234577777777743
Q ss_pred chhccc----hhhhccCCCcEEeccCCc
Q 002129 147 RLEKLC----ADMGNLVKLHHLKNSNTK 170 (962)
Q Consensus 147 ~~~~lp----~~i~~L~~L~~L~l~~n~ 170 (962)
.-..-+ +-+..++.|++|+|.+|.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 222222 224566777777777776
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=3.9e-07 Score=101.45 Aligned_cols=105 Identities=27% Similarity=0.333 Sum_probs=78.6
Q ss_pred ccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCC
Q 002129 82 LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKL 161 (962)
Q Consensus 82 ~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 161 (962)
...+..+++|++|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++| .+..++ ++..+++|
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDIS-GLESLKSL 164 (414)
T ss_pred hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhcc-CCccchhh
Confidence 3345578888899999988888865588888999999999988888 34777888888999884 555553 56668888
Q ss_pred cEEeccCCccccccccc-ccccccccccce
Q 002129 162 HHLKNSNTKSLEEMPVG-IGRLTCLQTLCS 190 (962)
Q Consensus 162 ~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~ 190 (962)
+.+++++|. +..+... ...+.+++.+.+
T Consensus 165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 165 KLLDLSYNR-IVDIENDELSELISLEELDL 193 (414)
T ss_pred hcccCCcch-hhhhhhhhhhhccchHHHhc
Confidence 888888888 5555443 466666666644
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1e-07 Score=92.89 Aligned_cols=183 Identities=13% Similarity=0.088 Sum_probs=103.4
Q ss_pred cCccEEEecCCCCchh-hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129 690 PSLKLLLVWGCSKLES-IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA 768 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~ 768 (962)
+.|+.||+++-.+... +...+..|.+|+.|.+.++.+...+...+.+-.+|+.|+|+.|..++.....
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~----------- 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ----------- 253 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH-----------
Confidence 5688889888766543 4566778889999999988887777777777788888888888665543221
Q ss_pred cccccccccCccccCCCcccceeecCCCCCCCCCC---CCCCCCccceEeecCchhhhHH-HHhccccccccCccceeec
Q 002129 769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLE---EDGLPTNLHVLLINGNMEIWKS-MIERGRGFHRFSSLRQLTI 844 (962)
Q Consensus 769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~L~l 844 (962)
-.+.+++.|.+|++++|......- ....-.+|+.|+++|+...... -.+ .-...+|+|.+||+
T Consensus 254 -----------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~--tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 254 -----------LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS--TLVRRCPNLVHLDL 320 (419)
T ss_pred -----------HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH--HHHHhCCceeeecc
Confidence 012344444444444443222110 0122345555555555432211 000 22355677777777
Q ss_pred ccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcc-cccccccCCCcCeEeccCC
Q 002129 845 MNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLER-LTSSIVDLQNLTGLVLGNC 905 (962)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c 905 (962)
++|...-. +...++..++.|++|.++.|..+-- ---.+.+-|.|.+|++.+|
T Consensus 321 SD~v~l~~---------~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 321 SDSVMLKN---------DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccCc---------hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 77521111 1112234567777777777754321 0012355667888888777
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.5e-07 Score=90.23 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=29.7
Q ss_pred cCccEEEecCCCCchh-hhhhccCCCCcceEeecCCccccccCc---cccCCCCccEEEcccC
Q 002129 690 PSLKLLLVWGCSKLES-IAEMLDNNTSLEKINISGCGNLQTLPS---GLHNLCQLQEISIASC 748 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~L~~~ 748 (962)
++|..||+++|..+.. ....|..++.|++|.++.|..+- |. .+...|+|.+|++.+|
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 4455555555543332 22345556666666666665432 22 2345666777776665
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=7.9e-06 Score=57.07 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=27.9
Q ss_pred CcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccc
Q 002129 112 RYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLC 152 (962)
Q Consensus 112 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp 152 (962)
++|++|++++|+|+++|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4678888888888888777888888888888875 454443
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=4.7e-06 Score=92.86 Aligned_cols=241 Identities=22% Similarity=0.209 Sum_probs=119.2
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCC-CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL 603 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 603 (962)
..++.+.++.|...+ +-..+..+.+|+.|++.+ +.++.+.. ...+++|++|++++|. ++.+... ..++.|+.|
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l---~~l~~L~~L 145 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGL---STLTLLKEL 145 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccc-cchhhcccchhhhhcchheeccccc-cccccch---hhccchhhh
Confidence 455555555544332 222355677777777777 34555555 5666777777777766 4333322 334556666
Q ss_pred EecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCcccccccc
Q 002129 604 EISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESL 683 (962)
Q Consensus 604 ~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l 683 (962)
++++| .++.+.....+
T Consensus 146 ~l~~N-~i~~~~~~~~l--------------------------------------------------------------- 161 (414)
T KOG0531|consen 146 NLSGN-LISDISGLESL--------------------------------------------------------------- 161 (414)
T ss_pred eeccC-cchhccCCccc---------------------------------------------------------------
Confidence 66663 33333222222
Q ss_pred ccCCCccCccEEEecCCCCchhhh-hhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcc
Q 002129 684 EVGNLPPSLKLLLVWGCSKLESIA-EMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCA 762 (962)
Q Consensus 684 ~~~~l~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 762 (962)
..|+.+++++|.+...-+ . ...+.+++.+++.+|.... ...+..+..+..+++..|.....-+.......
T Consensus 162 ------~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~ 232 (414)
T KOG0531|consen 162 ------KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGLNELVML 232 (414)
T ss_pred ------hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCcccchhH
Confidence 455556666655444433 2 4566666666666655433 12233344444445555522221111111111
Q ss_pred cccccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCcccee
Q 002129 763 KLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQL 842 (962)
Q Consensus 763 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 842 (962)
.|+.+++.+++ +..++.++..+..+..+++.++ .+..+......+.+..+....+.................+.++..
T Consensus 233 ~L~~l~l~~n~-i~~~~~~~~~~~~l~~l~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 233 HLRELYLSGNR-ISRSPEGLENLKNLPVLDLSSN-RISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHHhcccCc-cccccccccccccccccchhhc-cccccccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 26777777776 3444355666677777777665 333333333445555555555554322111100113444555555
Q ss_pred eccc
Q 002129 843 TIMN 846 (962)
Q Consensus 843 ~l~~ 846 (962)
.+.+
T Consensus 311 ~~~~ 314 (414)
T KOG0531|consen 311 TLEL 314 (414)
T ss_pred cccc
Confidence 5554
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=2.9e-07 Score=100.48 Aligned_cols=125 Identities=26% Similarity=0.245 Sum_probs=83.0
Q ss_pred ccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccccc
Q 002129 692 LKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYN 771 (962)
Q Consensus 692 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~ 771 (962)
|...+.+.|. +..+-.+++-++.|+.|+|++|+.... +.+..++.|++|||++| .+..+|.-...-..|..|.+++
T Consensus 166 L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred Hhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc-hhccccccchhhhhheeeeecc
Confidence 3333444433 333445666777788888888776553 25777888888888888 6777776433323688888888
Q ss_pred ccccccCccccCCCcccceeecCCCCCCCCCC---CCCCCCccceEeecCchhhh
Q 002129 772 CKRLEALPKGLHNLKSLQELRIGKGVALPSLE---EDGLPTNLHVLLINGNMEIW 823 (962)
Q Consensus 772 c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~ 823 (962)
|. +..+ .++.++.+|+.||+++| .+.... ..+.+..|++|++.||++--
T Consensus 242 N~-l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 NA-LTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cH-HHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 87 3333 36788888888888887 443332 23566788888888887643
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=5.4e-06 Score=71.53 Aligned_cols=90 Identities=26% Similarity=0.295 Sum_probs=65.1
Q ss_pred cCCcccEEEecCCCCcccCcccc-CCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEe
Q 002129 87 KLQSLRVFSLRGYRILELPDSVG-DLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLK 165 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (962)
...+|...+|++|.+..+|..|. ..+..+.|+|++|.|.++|..+..++.|+.|+++. |.+...|..|..|.+|-.|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhc
Confidence 55567777777777777777763 34477777788888877877777777888888877 45666777777777777777
Q ss_pred ccCCccccccccc
Q 002129 166 NSNTKSLEEMPVG 178 (962)
Q Consensus 166 l~~n~~~~~lp~~ 178 (962)
..+|. ...+|..
T Consensus 130 s~~na-~~eid~d 141 (177)
T KOG4579|consen 130 SPENA-RAEIDVD 141 (177)
T ss_pred CCCCc-cccCcHH
Confidence 77776 5556544
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.66 E-value=5.7e-06 Score=71.38 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=85.7
Q ss_pred cCCcccEEEecCCCCcccCcc---ccCCCcCcEEEcCCCcccccChhhhcc-CCccEEecCCCcchhccchhhhccCCCc
Q 002129 87 KLQSLRVFSLRGYRILELPDS---VGDLRYLRYLNLSGTEIRTLPESVSKL-YNLHSLLLEDCDRLEKLCADMGNLVKLH 162 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~lp~~---~~~L~~L~~L~Ls~n~i~~lp~~i~~L-~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 162 (962)
..+.+..++|+.|.+..+++. +....+|+..+|++|.+..+|+.|... +-.++|++++ +.+..+|+++..++.|+
T Consensus 25 dakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALR 103 (177)
T ss_pred HHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhh
Confidence 445677899999998877654 567788999999999999999887654 5899999998 68999999999999999
Q ss_pred EEeccCCcccccccccccccccccccc
Q 002129 163 HLKNSNTKSLEEMPVGIGRLTCLQTLC 189 (962)
Q Consensus 163 ~L~l~~n~~~~~lp~~~~~L~~L~~L~ 189 (962)
.|+++.|. +...|.-|..|.+|-.|+
T Consensus 104 ~lNl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 104 SLNLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hcccccCc-cccchHHHHHHHhHHHhc
Confidence 99999999 777888888887777774
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.64 E-value=4.2e-06 Score=96.61 Aligned_cols=110 Identities=28% Similarity=0.497 Sum_probs=52.1
Q ss_pred hhcceeecccccCccc--cCccCCCCCCccEEEecCC-CCccccC-----CCCCCCCCcEEEEcCCCCCCCChhhhhcCC
Q 002129 525 ELLEYLRLSYCEGLVK--LPQSSLSLSSLREIEIYGC-RSLVSFP-----EVALPSKLKKIEISSCDALKSLPEAWMCDT 596 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~--~~~~~~~l~~L~~L~l~~~-~~l~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 596 (962)
+.|+.+.+.+|..+.. +-.....++.|++|++++| ......+ ....+++|+.+++++|..+++......+..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 4455555555544443 2223344555555555552 2222111 122345666666666665555544444445
Q ss_pred CCCccEEEecCCCCCCcccCC---CCCCCCceEEecccCCC
Q 002129 597 NSSLEILEISGCDSLTYIAGV---QLPPSLKRLKICHCDNI 634 (962)
Q Consensus 597 l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l 634 (962)
+++|++|.+.+|..++...-. ..+++|++|++++|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 666666666666554332111 23344555555555443
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.00015 Score=71.40 Aligned_cols=193 Identities=11% Similarity=0.004 Sum_probs=110.5
Q ss_pred HHHHHHHHhhcceeecccccCcc--ccCccCCCCCCccEEEecCCCCccccCCC-CCCCCCcEEEEcCCCCCCCChhhhh
Q 002129 517 KDQQQQLYELLEYLRLSYCEGLV--KLPQSSLSLSSLREIEIYGCRSLVSFPEV-ALPSKLKKIEISSCDALKSLPEAWM 593 (962)
Q Consensus 517 ~~~~~~l~~~L~~L~ls~~~~l~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~ 593 (962)
...+....+.++.+|+.+|.... .+...+.++|.|+.|+++.|+.-..|... ....+|++|-+.+.. +.--....+
T Consensus 63 ~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~ 141 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSS 141 (418)
T ss_pred HHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhh
Confidence 34566667889999999987654 44455678999999999998766555544 346789999988765 221111222
Q ss_pred cCCCCCccEEEecCCCCCCcccC-----CCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCcc
Q 002129 594 CDTNSSLEILEISGCDSLTYIAG-----VQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLT 668 (962)
Q Consensus 594 ~~~l~~L~~L~l~~c~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 668 (962)
...+|.+++|+++.| ++..+.. ....+.++++++..| +...
T Consensus 142 l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c---------------------------------~~~~ 187 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPC---------------------------------LEQL 187 (418)
T ss_pred hhcchhhhhhhhccc-hhhhhccccccccccchhhhhhhcCCc---------------------------------HHHH
Confidence 277889999999985 2222111 112233444444333 2111
Q ss_pred ccccCCCccccccccccCCCccCccEEEecCCCCchhh-hhhccCCCCcceEeecCCccccc-cCccccCCCCccEEEcc
Q 002129 669 CIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESI-AEMLDNNTSLEKINISGCGNLQT-LPSGLHNLCQLQEISIA 746 (962)
Q Consensus 669 ~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~ 746 (962)
..+...++.+.+++..+.+..|++-+.- ...+..++.+-.|+|+.+++-.- --+.+.++++|..|.++
T Consensus 188 ----------w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~ 257 (418)
T KOG2982|consen 188 ----------WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVS 257 (418)
T ss_pred ----------HHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeecc
Confidence 0011111222267777777777654432 23455556666677766543210 01345667777777777
Q ss_pred cCCCcccC
Q 002129 747 SCGNLVSS 754 (962)
Q Consensus 747 ~~~~l~~~ 754 (962)
++|....+
T Consensus 258 ~~Pl~d~l 265 (418)
T KOG2982|consen 258 ENPLSDPL 265 (418)
T ss_pred CCcccccc
Confidence 77654433
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.42 E-value=4.5e-06 Score=91.49 Aligned_cols=101 Identities=25% Similarity=0.205 Sum_probs=63.4
Q ss_pred CCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchh-hhccCCCcEEec
Q 002129 88 LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKN 166 (962)
Q Consensus 88 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l 166 (962)
.-.|.+-+.++|.+..+-.++.-++.|+.|+|++|+++..- .+..|.+|++|||++ |.+..+|.- ...+. |+.|.+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeeee
Confidence 34566666666666666566666777777777777776653 566777777777777 456666532 23333 677777
Q ss_pred cCCcccccccccccccccccccceeee
Q 002129 167 SNTKSLEEMPVGIGRLTCLQTLCSFVV 193 (962)
Q Consensus 167 ~~n~~~~~lp~~~~~L~~L~~L~~~~~ 193 (962)
++|. +..+ .++.+|++|+.|++.++
T Consensus 240 rnN~-l~tL-~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 240 RNNA-LTTL-RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred cccH-HHhh-hhHHhhhhhhccchhHh
Confidence 7766 4444 45666777776665443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=0.00013 Score=84.70 Aligned_cols=106 Identities=28% Similarity=0.320 Sum_probs=53.5
Q ss_pred CCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCc--ccCccccCCCcCcEEEcCCCcccccChhhhcc
Q 002129 58 IQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRIL--ELPDSVGDLRYLRYLNLSGTEIRTLPESVSKL 134 (962)
Q Consensus 58 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L 134 (962)
-.+||.|.+.+.. ......|..++ .++.||.|.+++-.+. ++-.-..++++|+.||+|+++++.+ .+|++|
T Consensus 121 r~nL~~LdI~G~~-----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSE-----LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL 194 (699)
T ss_pred HHhhhhcCccccc-----hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence 3455555554422 12334445555 5566666666554433 1222234555666666666666655 456666
Q ss_pred CCccEEecCCCcchhccc--hhhhccCCCcEEeccCCc
Q 002129 135 YNLHSLLLEDCDRLEKLC--ADMGNLVKLHHLKNSNTK 170 (962)
Q Consensus 135 ~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~ 170 (962)
++|++|.+++ -.+..-+ ..+..|++|++||+|...
T Consensus 195 knLq~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 195 KNLQVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccHHHHhccC-CCCCchhhHHHHhcccCCCeeeccccc
Confidence 6666666554 2222211 234556666666666544
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.0002 Score=70.55 Aligned_cols=189 Identities=14% Similarity=0.107 Sum_probs=94.4
Q ss_pred CCCCcceEeecCCcccc--ccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccccccccc-ccCccccCCCccc
Q 002129 712 NNTSLEKINISGCGNLQ--TLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRL-EALPKGLHNLKSL 788 (962)
Q Consensus 712 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~l~~L 788 (962)
.++.++.+||.+|.+.. .+...+.++|.|+.|+|+.|+.-..+.....+..+|+.|-+.+-... +.....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45566666666655432 23344556677777777766433333322245556666666554321 1222344566777
Q ss_pred ceeecCCCCC----CCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCC
Q 002129 789 QELRIGKGVA----LPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSG 864 (962)
Q Consensus 789 ~~L~l~~~~~----l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 864 (962)
++|+++.|.. +..-.....-+.++.++..+|........- ....-+|++..+.+.+|....+.-.+.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e~PlK~~s~ek~------- 219 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCEGPLKTESSEKG------- 219 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeecCcccchhhccc-------
Confidence 7777777631 111111123356666777777654422211 223456777777777653222221111
Q ss_pred ccccCCCccceEeeccCCCCcccc--cccccCCCcCeEeccCCCCCccCC
Q 002129 865 TVLPLPASLTYLRIEGFPNLERLT--SSIVDLQNLTGLVLGNCPKLKYFP 912 (962)
Q Consensus 865 ~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~ 912 (962)
...++.+--|.|+. +++.+.. ....+|+.|..|.+.+.|-...+.
T Consensus 220 --se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 220 --SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred --CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 12344444555554 3343332 134567777777777766555443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.00043 Score=64.55 Aligned_cols=104 Identities=23% Similarity=0.263 Sum_probs=78.3
Q ss_pred cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhh-ccCCccEEecCCCcchhccc--hhhhccCCCcE
Q 002129 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVS-KLYNLHSLLLEDCDRLEKLC--ADMGNLVKLHH 163 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~ 163 (962)
-+.....+||++|.+..+ ..|..+..|.+|.|.+|+|+.+-..+. .+++|++|.+.+| .+..+- ..+..+++|++
T Consensus 40 ~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccce
Confidence 345677899999998877 568899999999999999998866554 4567999999984 565553 24677889999
Q ss_pred EeccCCcccccccc----cccccccccccceeee
Q 002129 164 LKNSNTKSLEEMPV----GIGRLTCLQTLCSFVV 193 (962)
Q Consensus 164 L~l~~n~~~~~lp~----~~~~L~~L~~L~~~~~ 193 (962)
|.+-+|. ...-+. -+.++++|+.|+...+
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 9999998 544432 2677888888865443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.20 E-value=0.00015 Score=84.35 Aligned_cols=112 Identities=23% Similarity=0.324 Sum_probs=78.1
Q ss_pred cccccc---cCCcccEEEecCCCCc--ccCccc-cCCCcCcEEEcCCCccc--ccChhhhccCCccEEecCCCcchhccc
Q 002129 81 MLPKLL---KLQSLRVFSLRGYRIL--ELPDSV-GDLRYLRYLNLSGTEIR--TLPESVSKLYNLHSLLLEDCDRLEKLC 152 (962)
Q Consensus 81 ~~~~~~---~l~~L~~L~L~~~~i~--~lp~~~-~~L~~L~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp 152 (962)
+..++. .-.+|+.||++|...- .-|..+ ..|+.||.|.+++-.+. ++-.-..+++||..||+|+ +.+..+
T Consensus 111 lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl- 188 (699)
T KOG3665|consen 111 LLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL- 188 (699)
T ss_pred HHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-
Confidence 444444 4568999999886532 224444 56789999999887654 4444567889999999999 557666
Q ss_pred hhhhccCCCcEEeccCCccccccc--ccccccccccccceeeecC
Q 002129 153 ADMGNLVKLHHLKNSNTKSLEEMP--VGIGRLTCLQTLCSFVVGK 195 (962)
Q Consensus 153 ~~i~~L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~~~~~~~ 195 (962)
.++++|++|+.|.+.+-. ...-. .++.+|++|+.|+++....
T Consensus 189 ~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeecccccc
Confidence 789999999999887755 33222 3467788888887765443
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.16 E-value=7.1e-05 Score=86.40 Aligned_cols=117 Identities=23% Similarity=0.327 Sum_probs=76.4
Q ss_pred cCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccc-cCccccC----ccCCCCCCccEEEecCCCCccccC-
Q 002129 493 DVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYC-EGLVKLP----QSSLSLSSLREIEIYGCRSLVSFP- 566 (962)
Q Consensus 493 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~-~~l~~~~----~~~~~l~~L~~L~l~~~~~l~~~~- 566 (962)
.++.|+.|.+.+|..+...... .+...++.|+.|++++| ......+ .....+.+|+.|+++.|..+++..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLD----ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHH----HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 4677777777777776653311 12233478888888773 3222222 233456888888988887665443
Q ss_pred -C-CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCc
Q 002129 567 -E-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTY 613 (962)
Q Consensus 567 -~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 613 (962)
. ...+++|+.|.+.+|..++.......+..+++|++|++++|..++.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 1 1236789999988888766655555557788899999999887743
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.94 E-value=0.00037 Score=67.78 Aligned_cols=99 Identities=25% Similarity=0.295 Sum_probs=70.4
Q ss_pred cccccccCCcccEEEecCCCCcc-----cCccccCCCcCcEEEcCCCccc----ccC-------hhhhccCCccEEecCC
Q 002129 81 MLPKLLKLQSLRVFSLRGYRILE-----LPDSVGDLRYLRYLNLSGTEIR----TLP-------ESVSKLYNLHSLLLED 144 (962)
Q Consensus 81 ~~~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~n~i~----~lp-------~~i~~L~~L~~L~L~~ 144 (962)
+...+..+..+..++||+|.|.. +...+.+-.+|++-+++.-... ++| +.+-++++|+..+||.
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 33444467888999999999872 4566778889999998865332 333 3456789999999999
Q ss_pred Ccchhccchh----hhccCCCcEEeccCCccccccccc-cc
Q 002129 145 CDRLEKLCAD----MGNLVKLHHLKNSNTKSLEEMPVG-IG 180 (962)
Q Consensus 145 ~~~~~~lp~~----i~~L~~L~~L~l~~n~~~~~lp~~-~~ 180 (962)
|-.-...|+. |++-+.|.||.+++|. ++.+..+ |+
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rig 141 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIG 141 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHH
Confidence 6554555543 5777899999999998 6655433 44
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.61 E-value=0.00072 Score=65.84 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=60.1
Q ss_pred ccccCCCcCcEEEcCCCccc-----ccChhhhccCCccEEecCCCcch----hccch-------hhhccCCCcEEeccCC
Q 002129 106 DSVGDLRYLRYLNLSGTEIR-----TLPESVSKLYNLHSLLLEDCDRL----EKLCA-------DMGNLVKLHHLKNSNT 169 (962)
Q Consensus 106 ~~~~~L~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~~----~~lp~-------~i~~L~~L~~L~l~~n 169 (962)
..+..+..+..+|||+|.|. .+...|.+-.+|++.+++. -.. .++|+ .+-++++|+..++|+|
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 33456889999999999986 3455678888999999886 222 23343 3457899999999999
Q ss_pred ccccccccc----ccccccccccceee
Q 002129 170 KSLEEMPVG----IGRLTCLQTLCSFV 192 (962)
Q Consensus 170 ~~~~~lp~~----~~~L~~L~~L~~~~ 192 (962)
.+-...|.. |++-+.|.+|.+..
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~N 129 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNN 129 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeec
Confidence 855555543 45556666665443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.59 E-value=0.0013 Score=64.42 Aligned_cols=105 Identities=22% Similarity=0.218 Sum_probs=53.0
Q ss_pred cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCC--ccc-ccChhhhccCCccEEecCCCcchhccc--hhhhccCCC
Q 002129 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGT--EIR-TLPESVSKLYNLHSLLLEDCDRLEKLC--ADMGNLVKL 161 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n--~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L 161 (962)
.+..|..|++.+..++.+ ..|..|++|++|++|.| ++. .++-...++++|++|++++| .+..+- .....+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence 444555555555555443 34445666666666666 333 33333344466666666663 333211 124455566
Q ss_pred cEEeccCCcccccccc----cccccccccccceeeec
Q 002129 162 HHLKNSNTKSLEEMPV----GIGRLTCLQTLCSFVVG 194 (962)
Q Consensus 162 ~~L~l~~n~~~~~lp~----~~~~L~~L~~L~~~~~~ 194 (962)
..|++.+|. ...+-+ -+.-+++|..|+.+.+.
T Consensus 119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCC-ccccccHHHHHHHHhhhhccccccccC
Confidence 666666665 222221 14556666666554443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.58 E-value=0.0036 Score=58.59 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=62.9
Q ss_pred ccccccCCcccEEEecCCCCcccCccc-cCCCcCcEEEcCCCcccccC--hhhhccCCccEEecCCCcchhccch----h
Q 002129 82 LPKLLKLQSLRVFSLRGYRILELPDSV-GDLRYLRYLNLSGTEIRTLP--ESVSKLYNLHSLLLEDCDRLEKLCA----D 154 (962)
Q Consensus 82 ~~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~ 154 (962)
.+.+-+++.|.+|.|.+|+|+.|-+.+ .-+++|..|.|.+|.|.++- ..+..++.|++|.+-+| .+...+. -
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yv 135 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYV 135 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEE
Confidence 344448888888888888888885555 45567888888888887663 33677788888888874 3443332 2
Q ss_pred hhccCCCcEEeccCCc
Q 002129 155 MGNLVKLHHLKNSNTK 170 (962)
Q Consensus 155 i~~L~~L~~L~l~~n~ 170 (962)
+.++++|+.||.....
T Consensus 136 l~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVT 151 (233)
T ss_pred EEecCcceEeehhhhh
Confidence 5788888888887654
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.55 E-value=0.00097 Score=38.52 Aligned_cols=19 Identities=47% Similarity=0.908 Sum_probs=10.1
Q ss_pred CcEEEcCCCcccccChhhh
Q 002129 114 LRYLNLSGTEIRTLPESVS 132 (962)
Q Consensus 114 L~~L~Ls~n~i~~lp~~i~ 132 (962)
||+|||++|+++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.00037 Score=68.04 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=52.9
Q ss_pred CCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccch--hhhccCCCcEEe
Q 002129 88 LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCA--DMGNLVKLHHLK 165 (962)
Q Consensus 88 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~ 165 (962)
+.+.+-|++-||.++.| ....+++.|++|.||-|+|+.+ +.+..+++|+.|+|+. |.+..+-+ .+.+|++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence 34445555556665554 3345566666666666666655 3355666666666666 33443322 245666666666
Q ss_pred ccCCccccccccc-----ccccccccccc
Q 002129 166 NSNTKSLEEMPVG-----IGRLTCLQTLC 189 (962)
Q Consensus 166 l~~n~~~~~lp~~-----~~~L~~L~~L~ 189 (962)
|..|.-.+..+.. +.-|++|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 6655533333321 44556666664
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.04 E-value=0.0029 Score=36.50 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.9
Q ss_pred cccEEEecCCCCcccCccccCC
Q 002129 90 SLRVFSLRGYRILELPDSVGDL 111 (962)
Q Consensus 90 ~L~~L~L~~~~i~~lp~~~~~L 111 (962)
+|++|||++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.00096 Score=65.26 Aligned_cols=82 Identities=26% Similarity=0.270 Sum_probs=68.6
Q ss_pred cc-cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh--hhhccCCccEEecCCCcchhccch-----hhh
Q 002129 85 LL-KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE--SVSKLYNLHSLLLEDCDRLEKLCA-----DMG 156 (962)
Q Consensus 85 ~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~-----~i~ 156 (962)
++ .|+.|+||.|+-|+|+.+ ..+..+++|+.|.|..|.|.++-+ -+.+|++|++|-|..|...+.-+. .+.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 44 899999999999999998 678999999999999999998854 378999999999998766665553 257
Q ss_pred ccCCCcEEecc
Q 002129 157 NLVKLHHLKNS 167 (962)
Q Consensus 157 ~L~~L~~L~l~ 167 (962)
-|++|+.||--
T Consensus 115 ~LPnLkKLDnv 125 (388)
T KOG2123|consen 115 VLPNLKKLDNV 125 (388)
T ss_pred HcccchhccCc
Confidence 78999998743
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.48 E-value=0.047 Score=49.49 Aligned_cols=117 Identities=10% Similarity=0.238 Sum_probs=56.4
Q ss_pred cccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccChh-
Q 002129 54 DLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPES- 130 (962)
Q Consensus 54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~~- 130 (962)
.|..+++|+.+.+... ...+....| +++.|+.+.+.++ +..++ ..|.++..|+.+.+.. .+..++..
T Consensus 7 ~F~~~~~l~~i~~~~~--------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT--------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp TTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred HHhCCCCCCEEEECCC--------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence 4566777777765431 345666666 7777888888764 66664 3567777788888865 55555543
Q ss_pred hhccCCccEEecCCCcchhccch-hhhccCCCcEEeccCCccccccccc-ccccccc
Q 002129 131 VSKLYNLHSLLLEDCDRLEKLCA-DMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCL 185 (962)
Q Consensus 131 i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L 185 (962)
|...++|+.+++.. + +..++. .+.+. +|+.+.+..+ +..++.. |.+.++|
T Consensus 77 F~~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 77 FSNCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT-TTECEEEETT-T--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred ccccccccccccCc-c-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 66778888888865 2 445543 35665 7777777653 4445443 5544444
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.97 E-value=0.012 Score=57.85 Aligned_cols=85 Identities=24% Similarity=0.219 Sum_probs=58.6
Q ss_pred cCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCC--cchhccchhhhccCCCcEEeccCCcccccccccc--
Q 002129 104 LPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDC--DRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGI-- 179 (962)
Q Consensus 104 lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~-- 179 (962)
+....-....|+.|++.+..++.+ ..+-.|++|+.|+++.| .....++--...+++|++|++++|+ ++. +..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccch
Confidence 444456667788888888877765 33567899999999997 4455666556677999999999998 554 3333
Q ss_pred -ccccccccccee
Q 002129 180 -GRLTCLQTLCSF 191 (962)
Q Consensus 180 -~~L~~L~~L~~~ 191 (962)
..+.+|..|+++
T Consensus 112 l~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 112 LKELENLKSLDLF 124 (260)
T ss_pred hhhhcchhhhhcc
Confidence 344444455443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.94 E-value=0.015 Score=30.98 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=6.0
Q ss_pred cCcEEEcCCCcccccC
Q 002129 113 YLRYLNLSGTEIRTLP 128 (962)
Q Consensus 113 ~L~~L~Ls~n~i~~lp 128 (962)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555544443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.01 Score=55.84 Aligned_cols=90 Identities=18% Similarity=0.280 Sum_probs=64.2
Q ss_pred CccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccc
Q 002129 809 TNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLT 888 (962)
Q Consensus 809 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 888 (962)
..++.++.+++.+..... ..+.+++.++.|.+.+|... ....-+.. -...++|+.|++++|+++++--
T Consensus 101 ~~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~ck~~-dD~~L~~l-------~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANCKYF-DDWCLERL-------GGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred ceEEEEecCCchHHHHHH----HHHhccchhhhheeccccch-hhHHHHHh-------cccccchheeeccCCCeechhH
Confidence 457888999999888877 57899999999999997422 22111110 1256889999999998888743
Q ss_pred -cccccCCCcCeEeccCCCCCcc
Q 002129 889 -SSIVDLQNLTGLVLGNCPKLKY 910 (962)
Q Consensus 889 -~~~~~l~~L~~L~l~~c~~l~~ 910 (962)
.++..|++|+.|.+.+.+....
T Consensus 169 L~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 169 LACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHHHHHhhhhHHHHhcCchhhhc
Confidence 4567788888888888554433
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.02 E-value=0.0021 Score=61.18 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=70.9
Q ss_pred ccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcE
Q 002129 84 KLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHH 163 (962)
Q Consensus 84 ~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 163 (962)
++..++..++||++.|++..+-..|+.++.|..||++.|.|..+|+.++.+..++.+++.. +.....|.+++.++.++.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcch
Confidence 4456778888888888887777778888888888888888888888888888888888877 567778888888888888
Q ss_pred EeccCCc
Q 002129 164 LKNSNTK 170 (962)
Q Consensus 164 L~l~~n~ 170 (962)
+++-++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 8888776
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.01 E-value=0.12 Score=46.81 Aligned_cols=101 Identities=12% Similarity=0.269 Sum_probs=62.1
Q ss_pred cccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccch-hhh
Q 002129 81 MLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA-DMG 156 (962)
Q Consensus 81 ~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~ 156 (962)
+++..| ++++|+.+.+.. .+..++ .+|.++.+|+.+.+.++ +..++.. |....+|+.+.+.. ....++. .+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccc
Confidence 456677 888999999985 577774 56889989999999885 8888754 88888999999975 3555554 467
Q ss_pred ccCCCcEEeccCCccccccccc-cccccccccc
Q 002129 157 NLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTL 188 (962)
Q Consensus 157 ~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L 188 (962)
.+++|+.+++..+ +..++.. +.+. +|+.+
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEE
Confidence 7999999999765 4555544 6665 66655
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.99 E-value=0.037 Score=29.48 Aligned_cols=17 Identities=35% Similarity=0.641 Sum_probs=11.5
Q ss_pred CcccEEEecCCCCcccC
Q 002129 89 QSLRVFSLRGYRILELP 105 (962)
Q Consensus 89 ~~L~~L~L~~~~i~~lp 105 (962)
++|++|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.49 E-value=0.0035 Score=59.76 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=77.6
Q ss_pred CcccC-ccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccc
Q 002129 101 ILELP-DSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGI 179 (962)
Q Consensus 101 i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~ 179 (962)
++++| ..+.....-++||++.|++..+-..|+.++.|..||++. +.+..+|+.++.+..++++++..|. ....|..+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 34555 356778889999999999999988899999999999998 6799999999999999999999888 88999999
Q ss_pred cccccccccce
Q 002129 180 GRLTCLQTLCS 190 (962)
Q Consensus 180 ~~L~~L~~L~~ 190 (962)
++++.++.++.
T Consensus 108 ~k~~~~k~~e~ 118 (326)
T KOG0473|consen 108 KKEPHPKKNEQ 118 (326)
T ss_pred cccCCcchhhh
Confidence 99999998854
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.016 Score=54.50 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=62.6
Q ss_pred cCCCCCCCcccccccccccccccccCccccCCCcccceeecCCCCCCCCCCC---CCCCCccceEeecCchhhhHHHHhc
Q 002129 753 SSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEE---DGLPTNLHVLLINGNMEIWKSMIER 829 (962)
Q Consensus 753 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~ 829 (962)
+.|....+-..++.++-+++.....--..+..++.++.|.+..|..+.+..- .+..++|+.|+|++|+.++....
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-- 169 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-- 169 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH--
Confidence 3444333434677777777775544445667788888888888877655332 24568899999999987776554
Q ss_pred cccccccCccceeeccc
Q 002129 830 GRGFHRFSSLRQLTIMN 846 (962)
Q Consensus 830 ~~~~~~l~~L~~L~l~~ 846 (962)
..+..+++|+.|.+.+
T Consensus 170 -~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 170 -ACLLKLKNLRRLHLYD 185 (221)
T ss_pred -HHHHHhhhhHHHHhcC
Confidence 4577788888888877
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.19 E-value=0.13 Score=31.15 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=15.1
Q ss_pred CCcCcEEEcCCCcccccChh
Q 002129 111 LRYLRYLNLSGTEIRTLPES 130 (962)
Q Consensus 111 L~~L~~L~Ls~n~i~~lp~~ 130 (962)
|++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45778888888888888765
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.19 E-value=0.13 Score=31.15 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=15.1
Q ss_pred CCcCcEEEcCCCcccccChh
Q 002129 111 LRYLRYLNLSGTEIRTLPES 130 (962)
Q Consensus 111 L~~L~~L~Ls~n~i~~lp~~ 130 (962)
|++|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45778888888888888765
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.88 E-value=0.44 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.1
Q ss_pred CCcccEEEecCCCCcccCccc
Q 002129 88 LQSLRVFSLRGYRILELPDSV 108 (962)
Q Consensus 88 l~~L~~L~L~~~~i~~lp~~~ 108 (962)
+++|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468999999999999998653
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.88 E-value=0.44 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.1
Q ss_pred CCcccEEEecCCCCcccCccc
Q 002129 88 LQSLRVFSLRGYRILELPDSV 108 (962)
Q Consensus 88 l~~L~~L~L~~~~i~~lp~~~ 108 (962)
+++|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468999999999999998653
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.19 E-value=1.4 Score=26.54 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=12.0
Q ss_pred CCcCcEEEcCCCccccc
Q 002129 111 LRYLRYLNLSGTEIRTL 127 (962)
Q Consensus 111 L~~L~~L~Ls~n~i~~l 127 (962)
+++|++|+|++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45777788888777654
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.18 E-value=1.1 Score=26.78 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=13.1
Q ss_pred cCcEEEcCCCcccccCh
Q 002129 113 YLRYLNLSGTEIRTLPE 129 (962)
Q Consensus 113 ~L~~L~Ls~n~i~~lp~ 129 (962)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57778888888887776
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.71 E-value=3.1 Score=24.99 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=6.2
Q ss_pred CcCeEeccCCCCCc
Q 002129 896 NLTGLVLGNCPKLK 909 (962)
Q Consensus 896 ~L~~L~l~~c~~l~ 909 (962)
+|++|++.+|++++
T Consensus 3 ~L~~L~l~~C~~it 16 (26)
T smart00367 3 NLRELDLSGCTNIT 16 (26)
T ss_pred CCCEeCCCCCCCcC
Confidence 44444444444433
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=63.90 E-value=4.4 Score=23.70 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=5.0
Q ss_pred cCcEEEcCCCccc
Q 002129 113 YLRYLNLSGTEIR 125 (962)
Q Consensus 113 ~L~~L~Ls~n~i~ 125 (962)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.65 E-value=6 Score=24.33 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=9.4
Q ss_pred CcCcEEEcCCCccc
Q 002129 112 RYLRYLNLSGTEIR 125 (962)
Q Consensus 112 ~~L~~L~Ls~n~i~ 125 (962)
++|++|||++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777665
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=45.10 E-value=0.88 Score=51.09 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=17.5
Q ss_pred CccEEEecCCCCchh----hhhhccCCCCcceEeecCCcc
Q 002129 691 SLKLLLVWGCSKLES----IAEMLDNNTSLEKINISGCGN 726 (962)
Q Consensus 691 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~ 726 (962)
.++.|++..|..... +...+.....++.++++.|.+
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 444455555544332 233444455555555555554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.58 E-value=15 Score=40.86 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=13.2
Q ss_pred CCCCCcceEEecccccceee
Q 002129 465 PQLPKLEELILSTKEQTYIW 484 (962)
Q Consensus 465 ~~~~~L~~L~l~~n~~~~i~ 484 (962)
..++.+..+.+++|++-.++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld 234 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLD 234 (585)
T ss_pred cCCcceeeeecccchhhchh
Confidence 35667777777777766553
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=33.07 E-value=57 Score=22.61 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=16.5
Q ss_pred CcCeEeccCCCCCccCCCCCCccccceeeccC
Q 002129 896 NLTGLVLGNCPKLKYFPEKGLPSSLLQLSINR 927 (962)
Q Consensus 896 ~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~ 927 (962)
++++|.+.+.- -+.+....+|++|++|.+.+
T Consensus 13 ~l~~L~~g~~f-n~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 13 SLKSLIFGSSF-NQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCeEEEECCcc-CccCCCCccCCCceEEEeeC
Confidence 44455552211 22334556777888887764
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.75 E-value=51 Score=36.99 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=23.9
Q ss_pred CCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCccc
Q 002129 571 PSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIA 615 (962)
Q Consensus 571 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 615 (962)
.|+|+.|+|++|........+..--+...|++|.+.|||-.+.+.
T Consensus 243 apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred cchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchh
Confidence 466677777766221111111111344567777777777666653
Done!