Query 002129
Match_columns 962
No_of_seqs 580 out of 4465
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 13:34:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.5E-52 8.5E-57 504.4 35.3 679 89-953 50-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-48 7.1E-53 470.1 32.0 660 59-820 50-738 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 9.3E-42 3.2E-46 409.3 42.1 584 92-929 7-620 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-39 7.6E-44 388.7 38.2 253 32-329 23-283 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.4E-38 4.9E-43 376.4 33.0 295 469-821 255-559 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-38 5.2E-43 376.2 32.4 126 59-192 32-162 (606)
7 3t6q_A CD180 antigen; protein- 100.0 4.3E-38 1.5E-42 372.3 32.6 509 90-798 34-559 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5E-37 1.7E-41 363.2 36.2 153 690-847 376-531 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-34 4.3E-39 353.6 40.6 112 78-192 16-132 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 2.6E-34 9.1E-39 337.7 31.2 111 690-800 421-532 (570)
11 2z81_A CD282 antigen, TOLL-lik 100.0 7.4E-34 2.5E-38 331.9 32.5 145 690-847 361-507 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.2E-33 1.4E-37 340.1 39.6 513 57-776 22-561 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.6E-34 9E-39 335.7 27.8 209 79-329 18-234 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 6E-33 2.1E-37 326.1 33.9 106 690-796 373-480 (570)
15 4ecn_A Leucine-rich repeat pro 100.0 9.1E-33 3.1E-37 329.3 27.5 112 690-823 728-841 (876)
16 2z7x_B TOLL-like receptor 1, v 100.0 7.8E-32 2.7E-36 312.1 31.0 221 525-823 247-482 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-31 7.5E-36 317.7 32.6 124 60-192 53-182 (635)
18 4eco_A Uncharacterized protein 100.0 3.6E-32 1.2E-36 320.3 24.6 111 690-822 488-600 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-31 3.8E-36 310.8 26.7 104 690-797 374-479 (520)
20 4eco_A Uncharacterized protein 100.0 4.3E-32 1.5E-36 319.7 23.0 371 122-632 193-598 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-30 7.3E-35 309.2 31.7 111 78-192 43-157 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 1.7E-30 5.8E-35 309.7 23.9 50 533-584 790-839 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-29 5.2E-34 295.2 27.4 129 690-822 377-510 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-29 9.4E-34 293.0 26.9 120 59-191 31-154 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.7E-29 5.7E-34 283.8 20.0 116 492-631 192-307 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 7.5E-29 2.6E-33 278.5 23.3 80 86-177 8-88 (454)
27 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-27 5.5E-32 267.9 23.8 98 82-188 35-132 (457)
28 3v47_A TOLL-like receptor 5B a 99.9 2.2E-26 7.5E-31 261.8 22.6 109 690-798 299-407 (455)
29 1o6v_A Internalin A; bacterial 99.9 2.4E-25 8.4E-30 252.9 27.4 78 525-609 309-386 (466)
30 3v47_A TOLL-like receptor 5B a 99.9 3.7E-25 1.3E-29 251.6 23.6 366 389-822 21-408 (455)
31 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-25 7.6E-30 250.5 21.0 331 53-537 36-367 (457)
32 1o6v_A Internalin A; bacterial 99.9 1.2E-24 4.2E-29 247.1 24.9 349 466-913 44-392 (466)
33 4fmz_A Internalin; leucine ric 99.9 1.9E-23 6.5E-28 228.1 23.7 99 525-630 66-164 (347)
34 4fmz_A Internalin; leucine ric 99.9 2E-23 6.7E-28 227.9 23.5 301 525-929 44-344 (347)
35 3o6n_A APL1; leucine-rich repe 99.9 4.5E-24 1.5E-28 236.8 18.2 302 56-432 42-351 (390)
36 2id5_A Lingo-1, leucine rich r 99.9 5.2E-23 1.8E-27 235.1 23.9 294 525-882 32-331 (477)
37 3o6n_A APL1; leucine-rich repe 99.9 6.4E-23 2.2E-27 227.5 23.9 313 465-826 42-356 (390)
38 2id5_A Lingo-1, leucine rich r 99.9 2.4E-22 8.1E-27 229.6 28.0 277 465-798 53-332 (477)
39 3oja_B Anopheles plasmodium-re 99.9 5.1E-23 1.8E-27 241.0 19.4 301 57-432 49-357 (597)
40 3oja_B Anopheles plasmodium-re 99.9 4.3E-22 1.5E-26 233.2 23.3 312 466-826 49-362 (597)
41 1ogq_A PGIP-2, polygalacturona 99.9 6.8E-22 2.3E-26 211.1 13.0 247 34-329 50-302 (313)
42 4fcg_A Uncharacterized protein 99.9 5.6E-21 1.9E-25 205.2 19.2 186 87-330 79-265 (328)
43 1xku_A Decorin; proteoglycan, 99.9 2.9E-20 9.8E-25 200.9 23.0 294 469-847 32-329 (330)
44 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-20 4.7E-25 203.5 19.1 294 469-847 34-330 (332)
45 1xku_A Decorin; proteoglycan, 99.8 3.4E-20 1.2E-24 200.3 21.5 180 690-881 145-329 (330)
46 4fcg_A Uncharacterized protein 99.8 2.4E-20 8.4E-25 200.2 18.9 219 525-795 81-310 (328)
47 2ft3_A Biglycan; proteoglycan, 99.8 1.3E-19 4.6E-24 195.7 24.7 203 690-906 123-331 (332)
48 1ogq_A PGIP-2, polygalacturona 99.8 3.2E-21 1.1E-25 205.9 9.8 126 691-818 175-300 (313)
49 3ogk_B Coronatine-insensitive 99.8 7.4E-22 2.5E-26 232.6 5.3 388 466-923 110-540 (592)
50 3ogk_B Coronatine-insensitive 99.8 9.3E-22 3.2E-26 231.8 5.4 326 467-848 163-524 (592)
51 2z80_A TOLL-like receptor 2, v 99.8 4.2E-19 1.4E-23 193.7 18.7 99 87-188 29-129 (353)
52 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-18 4.6E-23 200.8 23.3 80 88-177 39-118 (622)
53 1z7x_W Ribonuclease inhibitor; 99.8 6.3E-22 2.2E-26 225.4 -7.5 281 469-797 86-409 (461)
54 2z80_A TOLL-like receptor 2, v 99.8 1E-18 3.5E-23 190.6 17.5 249 525-823 52-315 (353)
55 1z7x_W Ribonuclease inhibitor; 99.8 2.1E-21 7.2E-26 221.1 -4.4 236 467-749 141-409 (461)
56 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-17 6.5E-22 191.2 26.6 214 525-821 40-253 (622)
57 2p1m_B Transport inhibitor res 99.8 5E-21 1.7E-25 225.8 -4.0 84 690-774 432-518 (594)
58 2z66_A Variable lymphocyte rec 99.8 1.9E-18 6.6E-23 184.4 15.9 134 690-823 126-262 (306)
59 3zyi_A Leucine-rich repeat-con 99.8 7.9E-18 2.7E-22 190.2 21.6 106 690-797 196-301 (452)
60 2p1m_B Transport inhibitor res 99.8 1.2E-20 4.1E-25 222.5 -1.7 84 347-431 65-167 (594)
61 2z66_A Variable lymphocyte rec 99.8 1.4E-18 4.7E-23 185.6 14.4 123 59-189 28-156 (306)
62 3zyj_A Leucine-rich repeat-con 99.8 8.5E-18 2.9E-22 189.2 21.6 200 690-906 88-290 (440)
63 1ozn_A Reticulon 4 receptor; N 99.8 1.5E-18 5.1E-23 183.1 13.9 204 525-798 32-237 (285)
64 3o53_A Protein LRIM1, AGAP0063 99.8 2.7E-19 9.1E-24 191.6 7.9 237 525-847 34-272 (317)
65 3zyi_A Leucine-rich repeat-con 99.8 6.4E-18 2.2E-22 190.9 18.8 221 690-929 75-301 (452)
66 3zyj_A Leucine-rich repeat-con 99.8 1.4E-17 4.7E-22 187.5 19.3 222 689-929 63-290 (440)
67 3oja_A Leucine-rich immune mol 99.7 2.9E-18 9.9E-23 194.4 12.2 235 525-845 34-270 (487)
68 1ozn_A Reticulon 4 receptor; N 99.7 3.5E-17 1.2E-21 172.6 16.9 202 689-906 31-236 (285)
69 1wwl_A Monocyte differentiatio 99.7 7.4E-18 2.5E-22 179.9 10.9 245 493-797 41-307 (312)
70 3o53_A Protein LRIM1, AGAP0063 99.7 5.2E-18 1.8E-22 181.6 8.6 57 465-537 55-111 (317)
71 1wwl_A Monocyte differentiatio 99.7 9.7E-18 3.3E-22 179.0 10.3 203 87-329 93-307 (312)
72 2z62_A TOLL-like receptor 4, v 99.7 2.6E-16 8.9E-21 165.0 16.9 200 59-329 28-235 (276)
73 2xwt_C Thyrotropin receptor; s 99.7 2.7E-16 9.4E-21 160.8 16.3 126 690-820 105-237 (239)
74 2xwt_C Thyrotropin receptor; s 99.7 2.1E-16 7.2E-21 161.6 15.3 200 690-930 31-238 (239)
75 1p9a_G Platelet glycoprotein I 99.7 2.7E-16 9.1E-21 165.3 15.7 198 56-329 7-206 (290)
76 2o6q_A Variable lymphocyte rec 99.7 5.4E-16 1.9E-20 161.7 17.0 175 89-329 37-216 (270)
77 3oja_A Leucine-rich immune mol 99.7 1.3E-16 4.3E-21 181.0 12.0 214 690-931 34-250 (487)
78 2z62_A TOLL-like receptor 4, v 99.7 4.5E-16 1.5E-20 163.1 14.8 202 688-906 26-235 (276)
79 4ay9_X Follicle-stimulating ho 99.7 2.4E-15 8.1E-20 163.3 20.5 97 707-804 97-195 (350)
80 1p9a_G Platelet glycoprotein I 99.7 1.3E-15 4.5E-20 160.0 17.5 105 691-797 101-206 (290)
81 1h6u_A Internalin H; cell adhe 99.6 4.4E-16 1.5E-20 165.5 11.7 60 266-329 169-228 (308)
82 4ay9_X Follicle-stimulating ho 99.6 1.4E-15 4.8E-20 165.1 15.7 222 689-927 29-255 (350)
83 4glp_A Monocyte differentiatio 99.6 2.2E-15 7.5E-20 160.7 15.8 200 525-797 91-305 (310)
84 3rfs_A Internalin B, repeat mo 99.6 4.7E-15 1.6E-19 154.7 17.3 207 525-789 41-249 (272)
85 3rfs_A Internalin B, repeat mo 99.6 1.9E-15 6.6E-20 157.6 14.2 220 525-826 19-239 (272)
86 2o6q_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 153.1 16.4 152 690-847 37-191 (270)
87 1h6u_A Internalin H; cell adhe 99.6 2.7E-15 9.2E-20 159.4 13.1 194 56-309 38-231 (308)
88 2ast_B S-phase kinase-associat 99.6 1.6E-16 5.3E-21 172.3 1.3 104 87-190 66-175 (336)
89 4glp_A Monocyte differentiatio 99.6 6.9E-15 2.4E-19 156.8 13.4 227 691-929 65-305 (310)
90 3m19_A Variable lymphocyte rec 99.6 3E-14 1E-18 146.6 16.9 173 90-329 15-190 (251)
91 2ast_B S-phase kinase-associat 99.6 2.3E-16 8E-21 170.9 0.0 84 525-611 70-155 (336)
92 1h6t_A Internalin B; cell adhe 99.5 3E-14 1E-18 149.8 11.3 168 87-329 44-211 (291)
93 2ca6_A RAN GTPase-activating p 99.5 1.4E-15 4.8E-20 168.0 0.1 104 87-190 58-194 (386)
94 4ezg_A Putative uncharacterize 99.5 2E-13 6.7E-18 134.6 13.8 146 34-193 44-191 (197)
95 3m19_A Variable lymphocyte rec 99.5 1.6E-13 5.3E-18 141.2 13.5 153 689-847 34-189 (251)
96 3goz_A Leucine-rich repeat-con 99.5 8.6E-15 2.9E-19 159.8 1.8 107 690-797 167-295 (362)
97 2o6s_A Variable lymphocyte rec 99.5 5E-13 1.7E-17 133.1 13.9 81 92-176 10-92 (208)
98 2v9t_B SLIT homolog 2 protein 99.5 1.9E-13 6.4E-18 137.0 10.8 129 59-195 32-164 (220)
99 2v9t_B SLIT homolog 2 protein 99.4 8.2E-13 2.8E-17 132.3 15.0 94 92-188 14-109 (220)
100 2ca6_A RAN GTPase-activating p 99.4 1.1E-14 3.9E-19 160.6 0.7 93 232-329 211-314 (386)
101 1m9s_A Internalin B; cell inva 99.4 1.8E-13 6.2E-18 157.9 10.3 168 87-329 41-208 (605)
102 3cvr_A Invasion plasmid antige 99.4 4.5E-13 1.5E-17 152.6 13.4 188 525-785 59-253 (571)
103 1h6t_A Internalin B; cell adhe 99.4 9.4E-13 3.2E-17 138.3 14.4 176 55-287 42-217 (291)
104 4ezg_A Putative uncharacterize 99.4 3.1E-13 1.1E-17 133.1 9.9 148 690-847 44-191 (197)
105 1xeu_A Internalin C; cellular 99.4 6.8E-14 2.3E-18 144.5 5.4 56 270-329 128-183 (263)
106 3goz_A Leucine-rich repeat-con 99.4 3.1E-14 1.1E-18 155.3 2.1 216 81-329 13-264 (362)
107 2o6s_A Variable lymphocyte rec 99.4 9E-13 3.1E-17 131.2 12.3 128 690-819 28-158 (208)
108 3e6j_A Variable lymphocyte rec 99.4 8.4E-13 2.9E-17 133.3 12.1 145 37-194 22-170 (229)
109 3cvr_A Invasion plasmid antige 99.4 9.2E-13 3.2E-17 150.0 13.8 177 90-331 60-243 (571)
110 2v70_A SLIT-2, SLIT homolog 2 99.4 9.1E-13 3.1E-17 132.0 11.6 147 37-195 14-165 (220)
111 3e6j_A Variable lymphocyte rec 99.4 2.1E-12 7.1E-17 130.4 12.6 132 31-171 37-171 (229)
112 2ell_A Acidic leucine-rich nuc 99.4 1.3E-12 4.5E-17 125.0 10.5 103 87-192 47-156 (168)
113 2v70_A SLIT-2, SLIT homolog 2 99.4 1.8E-12 6.2E-17 129.8 11.9 135 31-172 29-166 (220)
114 2je0_A Acidic leucine-rich nuc 99.4 1E-12 3.5E-17 122.9 9.2 124 58-190 16-147 (149)
115 1m9s_A Internalin B; cell inva 99.4 2.2E-12 7.4E-17 148.9 13.3 77 525-608 43-119 (605)
116 2ell_A Acidic leucine-rich nuc 99.4 2E-12 7E-17 123.6 10.5 138 31-178 21-165 (168)
117 1a9n_A U2A', U2A'; complex (nu 99.4 1.9E-12 6.4E-17 124.9 10.0 130 53-193 13-150 (176)
118 4b8c_D Glucose-repressible alc 99.3 1.5E-12 5.1E-17 154.5 9.9 153 33-192 172-325 (727)
119 2wfh_A SLIT homolog 2 protein 99.3 3.9E-12 1.3E-16 124.2 10.1 102 89-192 31-135 (193)
120 4b8c_D Glucose-repressible alc 99.3 6.7E-13 2.3E-17 157.5 5.4 123 52-182 217-339 (727)
121 1xeu_A Internalin C; cellular 99.3 1E-11 3.5E-16 128.1 13.3 142 34-193 41-182 (263)
122 2xot_A Amphoterin-induced prot 99.3 3.9E-12 1.3E-16 138.4 10.6 103 87-190 62-170 (361)
123 1w8a_A SLIT protein; signaling 99.3 5.5E-12 1.9E-16 123.3 9.7 84 87-170 52-137 (192)
124 2xot_A Amphoterin-induced prot 99.3 5.4E-12 1.8E-16 137.3 9.2 153 689-847 38-199 (361)
125 2je0_A Acidic leucine-rich nuc 99.3 6.8E-12 2.3E-16 117.2 8.4 129 31-168 14-149 (149)
126 2wfh_A SLIT homolog 2 protein 99.2 5.7E-11 2E-15 115.9 12.7 93 92-188 13-107 (193)
127 1w8a_A SLIT protein; signaling 99.2 3.3E-11 1.1E-15 117.8 10.8 117 78-196 20-139 (192)
128 1dce_A Protein (RAB geranylger 99.2 3E-11 1E-15 138.6 11.4 102 90-195 442-545 (567)
129 1a9n_A U2A', U2A'; complex (nu 99.2 3.5E-11 1.2E-15 115.9 8.7 127 32-170 17-151 (176)
130 2r9u_A Variable lymphocyte rec 99.2 6.8E-11 2.3E-15 113.1 9.0 102 78-183 24-128 (174)
131 2o6r_A Variable lymphocyte rec 99.1 2E-10 6.9E-15 110.7 11.4 104 59-170 28-135 (177)
132 2o6r_A Variable lymphocyte rec 99.1 2.6E-10 9E-15 109.9 11.6 112 79-194 20-135 (177)
133 1dce_A Protein (RAB geranylger 99.1 6.3E-11 2.1E-15 135.9 8.3 128 85-217 405-541 (567)
134 3sb4_A Hypothetical leucine ri 99.1 2.4E-10 8E-15 122.7 10.7 286 493-815 23-327 (329)
135 1ds9_A Outer arm dynein; leuci 99.1 3.8E-12 1.3E-16 125.3 -3.3 126 54-189 43-180 (198)
136 3g39_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 108.0 9.8 89 79-170 22-113 (170)
137 3g39_A Variable lymphocyte rec 99.1 3E-10 1E-14 108.3 9.4 101 91-195 11-114 (170)
138 2r9u_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 108.3 9.4 100 92-195 15-117 (174)
139 3sb4_A Hypothetical leucine ri 99.0 4.8E-10 1.6E-14 120.2 10.3 91 808-916 225-317 (329)
140 1ds9_A Outer arm dynein; leuci 99.0 8.2E-12 2.8E-16 123.0 -4.4 110 79-192 38-149 (198)
141 4fdw_A Leucine rich hypothetic 98.9 6.2E-08 2.1E-12 105.9 19.4 126 691-823 249-384 (401)
142 2ifg_A High affinity nerve gro 98.8 6.3E-09 2.1E-13 112.6 8.1 89 80-170 23-114 (347)
143 4fdw_A Leucine rich hypothetic 98.8 1E-07 3.5E-12 104.1 17.1 245 78-387 124-380 (401)
144 4fs7_A Uncharacterized protein 98.6 3E-06 1E-10 93.1 23.2 129 460-607 63-194 (394)
145 4fs7_A Uncharacterized protein 98.6 1.2E-06 4.2E-11 96.2 19.4 207 690-926 162-374 (394)
146 2ifg_A High affinity nerve gro 98.6 8.3E-08 2.8E-12 103.7 9.0 101 93-196 12-116 (347)
147 3un9_A NLR family member X1; l 98.4 4.3E-08 1.5E-12 106.1 -0.4 154 32-193 70-249 (372)
148 3un9_A NLR family member X1; l 98.4 1.6E-08 5.3E-13 109.5 -4.1 156 690-847 72-249 (372)
149 2ra8_A Uncharacterized protein 98.2 8.1E-07 2.8E-11 95.0 6.1 113 708-823 133-266 (362)
150 4gt6_A Cell surface protein; l 98.2 0.00012 4E-09 80.3 22.8 126 707-846 258-387 (394)
151 2ra8_A Uncharacterized protein 98.2 2.5E-06 8.5E-11 91.3 7.5 62 544-607 167-228 (362)
152 3e4g_A ATP synthase subunit S, 98.0 1.6E-06 5.4E-11 80.7 2.9 68 545-613 81-154 (176)
153 4gt6_A Cell surface protein; l 98.0 0.00017 5.7E-09 79.0 18.6 122 53-188 57-187 (394)
154 3e4g_A ATP synthase subunit S, 97.9 6E-06 2.1E-10 76.8 4.9 95 541-636 53-154 (176)
155 3rw6_A Nuclear RNA export fact 97.9 9.9E-06 3.4E-10 81.7 6.4 102 87-190 139-258 (267)
156 4h09_A Hypothetical leucine ri 97.8 0.0014 4.8E-08 71.2 22.6 43 466-514 44-86 (379)
157 1io0_A Tropomodulin; LRR prote 97.8 9.3E-06 3.2E-10 78.0 4.5 55 88-142 64-128 (185)
158 3rw6_A Nuclear RNA export fact 97.7 6.4E-06 2.2E-10 83.1 1.7 79 87-166 168-258 (267)
159 1io0_A Tropomodulin; LRR prote 97.7 1.8E-05 6.1E-10 76.0 3.9 105 87-192 34-160 (185)
160 4h09_A Hypothetical leucine ri 97.4 0.0038 1.3E-07 67.8 17.2 63 459-534 60-122 (379)
161 3rfe_A Platelet glycoprotein I 96.5 0.0038 1.3E-07 55.3 6.2 53 92-146 11-66 (130)
162 3rfe_A Platelet glycoprotein I 94.5 0.043 1.5E-06 48.4 5.4 53 115-170 11-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 94.1 0.045 1.5E-06 51.8 4.9 83 87-169 39-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 93.0 0.077 2.6E-06 50.2 4.5 110 56-170 38-168 (197)
165 2a5y_B CED-4; apoptosis; HET: 60.0 1.3 4.6E-05 50.0 -1.2 18 1-18 456-473 (549)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-52 Score=504.41 Aligned_cols=679 Identities=17% Similarity=0.078 Sum_probs=378.2
Q ss_pred CcccEEEecCCCCc-c---cCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccch--hhhccCCCc
Q 002129 89 QSLRVFSLRGYRIL-E---LPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCA--DMGNLVKLH 162 (962)
Q Consensus 89 ~~L~~L~L~~~~i~-~---lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~ 162 (962)
.+++.|+|+++.+. . +|+++.++++|++++++.+.+..+|+.|+++++|++|+|++|...+.+|. .++++++|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCC
Confidence 45666666666655 2 56666666666666666666666666666666666666666555555665 666666666
Q ss_pred EEeccCCcccccccccc-cccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCc
Q 002129 163 HLKNSNTKSLEEMPVGI-GRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKE 241 (962)
Q Consensus 163 ~L~l~~n~~~~~lp~~~-~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~ 241 (962)
+|++++|.+.+.+|..+ +++++|++|++..+... .........+.++++|++
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~---------------------------~~~~~~~~~~~~l~~L~~ 182 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS---------------------------GANVVGWVLSDGCGELKH 182 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE---------------------------EETHHHHHHTTCCTTCCE
T ss_pred EEECcCCccCCcCCHHHhccCCCCCEEECCCCccC---------------------------CcCChhhhhhccCCCCCE
Confidence 66666666444444443 55566665543221100 000000011344455555
Q ss_pred EEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCC
Q 002129 242 LWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLK 321 (962)
Q Consensus 242 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 321 (962)
|++++|. ....... ..+++|++|++++|.+.+.+|.++.+++|+
T Consensus 183 L~Ls~n~---------------------------------l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 226 (768)
T 3rgz_A 183 LAISGNK---------------------------------ISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226 (768)
T ss_dssp EECCSSE---------------------------------EESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred EECCCCc---------------------------------ccccCCc---ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence 5554443 1111111 135555666666655555555555566666
Q ss_pred eEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccccCCCccEEEeccCCcccccCCCCCCCc
Q 002129 322 HLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPAL 401 (962)
Q Consensus 322 ~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L 401 (962)
+|++++|.....+...+ ..+++|+.|++.++. +.+..+ ...+++|++|++++| .+++.+|..+
T Consensus 227 ~L~Ls~n~l~~~~~~~l------~~l~~L~~L~Ls~n~-l~~~~~------~~~l~~L~~L~L~~n-~l~~~ip~~~--- 289 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAI------STCTELKLLNISSNQ-FVGPIP------PLPLKSLQYLSLAEN-KFTGEIPDFL--- 289 (768)
T ss_dssp EEECCSSCCCSCHHHHT------TTCSSCCEEECCSSC-CEESCC------CCCCTTCCEEECCSS-EEEESCCCCS---
T ss_pred EEECcCCcCCCcccHHH------hcCCCCCEEECCCCc-ccCccC------ccccCCCCEEECcCC-ccCCccCHHH---
Confidence 66665554322222111 114445555554432 222111 124566666666666 4544555321
Q ss_pred cEEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccc
Q 002129 402 EMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQT 481 (962)
Q Consensus 402 ~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 481 (962)
...+++|++|++++|..... ....+..+++|++|++++|.+.
T Consensus 290 --------------~~~~~~L~~L~Ls~n~l~~~------------------------~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 290 --------------SGACDTLTGLDLSGNHFYGA------------------------VPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp --------------CTTCTTCSEEECCSSEEEEC------------------------CCGGGGGCTTCCEEECCSSEEE
T ss_pred --------------HhhcCcCCEEECcCCcCCCc------------------------cchHHhcCCCccEEECCCCccc
Confidence 01123333333333331110 0001123455666666665554
Q ss_pred eeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCC--CCCccEEEecCC
Q 002129 482 YIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLS--LSSLREIEIYGC 559 (962)
Q Consensus 482 ~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~--l~~L~~L~l~~~ 559 (962)
+. .+...+..+++|++|++++|.-...++.. +..+.++|+.|++++|...+.+|..+.. +++|++|++++|
T Consensus 332 ~~--ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-----l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 332 GE--LPMDTLLKMRGLKVLDLSFNEFSGELPES-----LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404 (768)
T ss_dssp EE--CCHHHHTTCTTCCEEECCSSEEEECCCTT-----HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred Cc--CCHHHHhcCCCCCEEeCcCCccCccccHH-----HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC
Confidence 21 12223455666666666664322233332 3334237777777777766666665555 667777777776
Q ss_pred CCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCC-CCCCCCceEEecccCCCccc
Q 002129 560 RSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV-QLPPSLKRLKICHCDNIRTL 637 (962)
Q Consensus 560 ~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l 637 (962)
.....+| .+..+++|++|++++|...+.+|..+ ..+++|++|++++|.....+|.. ..+++|+.|++++|.-...+
T Consensus 405 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccCHHHhcCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 6555555 35556777777777776555555554 56677777777776544444432 33455666666555322222
Q ss_pred cccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcc
Q 002129 638 TVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLE 717 (962)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 717 (962)
+ ..+..+ ++|++|++++|.+.+.+|..++.+++|+
T Consensus 483 p---------------------------------------~~l~~l------~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 483 P---------------------------------------SGLSNC------TNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp C---------------------------------------GGGGGC------TTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred C---------------------------------------HHHhcC------CCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 2 111111 5677777777777777777777777777
Q ss_pred eEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccc----------------------c
Q 002129 718 KINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKR----------------------L 775 (962)
Q Consensus 718 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~----------------------l 775 (962)
+|++++|.+.+.+|..+.++++|+.|++++|+..+.+|...+....+..+.+..+.. .
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 777777777777777777777777777777766666666555544444443332110 1
Q ss_pred ccCccccCCCcccceeecCCCCCCCCCCC-CCCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccC
Q 002129 776 EALPKGLHNLKSLQELRIGKGVALPSLEE-DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSF 854 (962)
Q Consensus 776 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 854 (962)
+..+..+..++.++.+++..+..-..+|. .+.+++|++|++++|.+....+ ..++.+++|+.|++++|. ....+
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip----~~l~~l~~L~~L~Ls~N~-l~g~i 672 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP----KEIGSMPYLFILNLGHND-ISGSI 672 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC----GGGGGCTTCCEEECCSSC-CCSCC
T ss_pred cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC----HHHhccccCCEEeCcCCc-cCCCC
Confidence 12222334444555555554432222332 2456778888888888776555 468889999999999963 44466
Q ss_pred CCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCCCCccccceeeccCChhhH--
Q 002129 855 PPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLSINRCPLIE-- 932 (962)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~l~-- 932 (962)
|... ..+++|++|+|+++.--..+|..+.++++|++|++++|+--..+|..+...++....+.+||.+.
T Consensus 673 p~~l---------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 673 PDEV---------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CGGG---------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred ChHH---------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 6544 57899999999996555589999999999999999998766788887777788888888887543
Q ss_pred --HhhccccCCcccccCcccEEE
Q 002129 933 --EKCRKDGGQYWDLLTHIPRVE 953 (962)
Q Consensus 933 --~~~~~~~~~~~~~i~~~~~~~ 953 (962)
..|....+++|++|+|+|.++
T Consensus 744 ~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 744 PLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp TSCCCCSCC--------------
T ss_pred CCcCCCCCccCCCCCCCCccccC
Confidence 268888899999999999864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-48 Score=470.13 Aligned_cols=660 Identities=16% Similarity=0.071 Sum_probs=413.7
Q ss_pred CceeEEeeccccCCCCCCCCcc---cccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCccc-ccCh--hhh
Q 002129 59 QHLRTFLPVILSNSKPGYLAPS---MLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIR-TLPE--SVS 132 (962)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~-~lp~--~i~ 132 (962)
.+++.|.+.+.. +... +++.+.++++|++++++.+.+..+|+.|+.+++|++|+|++|.++ .+|. .++
T Consensus 50 ~~v~~L~L~~~~------l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKP------LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSC------CCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred CcEEEEECCCCC------cCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHh
Confidence 456666654432 2233 566666888888888888887777788888888888888888876 5666 788
Q ss_pred ccCCccEEecCCCcchhccchhh-hccCCCcEEeccCCccccccccc---ccccccccccceeeecCCCCCCcccccccc
Q 002129 133 KLYNLHSLLLEDCDRLEKLCADM-GNLVKLHHLKNSNTKSLEEMPVG---IGRLTCLQTLCSFVVGKDSGSGLRELKLLT 208 (962)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~n~~~~~lp~~---~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~ 208 (962)
++++|++|++++|...+..|..+ +++++|++|++++|.+.+..|.. ++++++|++|++..+.....
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------- 193 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD---------- 193 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC----------
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc----------
Confidence 88888888888876666666655 78888888888888844445544 67777888776543221100
Q ss_pred cccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCC-CCCc
Q 002129 209 QLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGM-KFPT 287 (962)
Q Consensus 209 ~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~ 287 (962)
..+..+++|++|++++|.... ....+..+++|++|+++++... .+|.
T Consensus 194 ----------------------~~~~~l~~L~~L~Ls~n~l~~----------~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 194 ----------------------VDVSRCVNLEFLDVSSNNFST----------GIPFLGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp ----------------------CBCTTCTTCCEEECCSSCCCS----------CCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred ----------------------CCcccCCcCCEEECcCCcCCC----------CCcccccCCCCCEEECcCCcCCCcccH
Confidence 012445666666666554221 1122556667777777776654 3455
Q ss_pred cccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccC
Q 002129 288 WLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPH 367 (962)
Q Consensus 288 ~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 367 (962)
++. .+++|++|++++|.+.+.+|.. .+++|++|++++|.....+...+.. .+++|+.|++.++. +.+..+.
T Consensus 242 ~l~--~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n~-l~~~~p~ 312 (768)
T 3rgz_A 242 AIS--TCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGNH-FYGAVPP 312 (768)
T ss_dssp HTT--TCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSSE-EEECCCG
T ss_pred HHh--cCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHh-----hcCcCCEEECcCCc-CCCccch
Confidence 554 4677777777777766555544 6777777777776543333322211 14677777777653 2222221
Q ss_pred CCCcccccCCCccEEEeccCCcccccCC----CCCCCccEEEEcCccccc---ccCCCCC-cceEEEEccCCCceeeccc
Q 002129 368 GSSQGVERFPKLRELRILRCSKLKGTFP----EHLPALEMLVIEGCEELL---VSVSSLP-ALCKFIISGCKKVVWESAT 439 (962)
Q Consensus 368 ~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~l~---~~~~~l~-~L~~L~l~~~~~~~~~~~~ 439 (962)
.++.+++|++|++++| .+++.+| ..+++|++|++++|.... ..+..++ +|+.|++++|.......
T Consensus 313 ----~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~-- 385 (768)
T 3rgz_A 313 ----FFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL-- 385 (768)
T ss_dssp ----GGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC--
T ss_pred ----HHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC--
Confidence 2466777777777777 5554555 346777777777775432 1233344 77777777765322110
Q ss_pred cCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHH
Q 002129 440 GHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQ 519 (962)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 519 (962)
.......+++|++|++++|.+++. .+..+..+++|++|++++| .+....+..
T Consensus 386 --------------------~~~~~~~~~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~---- 437 (768)
T 3rgz_A 386 --------------------PNLCQNPKNTLQELYLQNNGFTGK---IPPTLSNCSELVSLHLSFN-YLSGTIPSS---- 437 (768)
T ss_dssp --------------------TTTTCSTTCCCCEEECCSSEEEEE---CCGGGGGCTTCCEEECCSS-EEESCCCGG----
T ss_pred --------------------hhhhhcccCCccEEECCCCccccc---cCHHHhcCCCCCEEECcCC-cccCcccHH----
Confidence 000111256788888888777644 2344567778888888874 444332221
Q ss_pred HHHHHhhcceeecccccCccccCccCCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCC
Q 002129 520 QQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNS 598 (962)
Q Consensus 520 ~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 598 (962)
+..+ ++|+.|++++|...+.+|..+..+++|++|++++|.....+| .+..+++|++|++++|...+.+|..+ ..++
T Consensus 438 l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~ 514 (768)
T 3rgz_A 438 LGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLE 514 (768)
T ss_dssp GGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCT
T ss_pred HhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCC
Confidence 2223 778888888887777777777778888888888876665555 35567788888888887655666655 5677
Q ss_pred CccEEEecCCCCCCcccCC-CCCCCCceEEecccCCCccccccccccccCCCCccc-cccceeEeeCCCC------cccc
Q 002129 599 SLEILEISGCDSLTYIAGV-QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTS-SLLEHLEIYSCPS------LTCI 670 (962)
Q Consensus 599 ~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~------l~~~ 670 (962)
+|++|++++|.....+|.. ..+++|+.|++++|.-...+|...+... ....... ...+...+.+... ....
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT-TCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc-chhhhhccccccccccccccccccccccccc
Confidence 8888888886655455543 4457788888887754445542211000 0000000 0000111111000 0000
Q ss_pred c-cCCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCC
Q 002129 671 F-SKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCG 749 (962)
Q Consensus 671 ~-~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 749 (962)
. ..+..+..+..+ +.++.+++..+...+.+|..++.+++|+.|++++|.+.+.+|..++++++|+.|+|++|.
T Consensus 594 ~~~~~~~~~~~~~l------~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 594 LEFQGIRSEQLNRL------STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp EECTTCCGGGGGGG------GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccchhhhcc------ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 0 000111111111 455566667777777788888888889999999888888888888888889999999887
Q ss_pred CcccCCCCCCCcccccccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCch
Q 002129 750 NLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNM 820 (962)
Q Consensus 750 ~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 820 (962)
..+.+|..+..+++|+.|++++|...+.+|..+..+++|++|++++|+....+|..+.+.++....+.+|+
T Consensus 668 l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence 77788888888888889999988888888888888888999999888776777776555555555555554
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.3e-42 Score=409.32 Aligned_cols=584 Identities=17% Similarity=0.146 Sum_probs=296.5
Q ss_pred cEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCc
Q 002129 92 RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTK 170 (962)
Q Consensus 92 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~ 170 (962)
+++++++++++.+|..+. .++++|+|++|.++.+|. .|+++++|++|++++|...+..|..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 568888888888887665 688888888888888765 48888888888888865555556778888888888888887
Q ss_pred cccccccc-ccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecC
Q 002129 171 SLEEMPVG-IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLY 249 (962)
Q Consensus 171 ~~~~lp~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 249 (962)
+..+|.+ |+++++|++|++.
T Consensus 85 -l~~l~~~~~~~l~~L~~L~L~---------------------------------------------------------- 105 (680)
T 1ziw_A 85 -LSQLSDKTFAFCTNLTELHLM---------------------------------------------------------- 105 (680)
T ss_dssp -CCCCCTTTTTTCTTCSEEECC----------------------------------------------------------
T ss_pred -cCccChhhhccCCCCCEEECC----------------------------------------------------------
Confidence 6666653 5555555555321
Q ss_pred CCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCC-ccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEEcC
Q 002129 250 GSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFP-TWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRG 327 (962)
Q Consensus 250 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~ 327 (962)
++....+| ..+. .+++|++|++++|.+.+..+ .++.+++|++|++++
T Consensus 106 -----------------------------~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 106 -----------------------------SNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp -----------------------------SSCCCCCCSCTTT--TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred -----------------------------CCccCccChhHcc--ccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 22222222 1222 46667777777776655544 466777777777777
Q ss_pred CCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccccCCCccEEEeccCCcccccCCCCCCCccEEEEc
Q 002129 328 MSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIE 407 (962)
Q Consensus 328 ~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~ 407 (962)
|... .+....++ ...+++|++|++++| .+++..|.
T Consensus 155 n~l~-~~~~~~~~--------------------------------~~~~~~L~~L~L~~n-~l~~~~~~----------- 189 (680)
T 1ziw_A 155 NKIQ-ALKSEELD--------------------------------IFANSSLKKLELSSN-QIKEFSPG----------- 189 (680)
T ss_dssp SCCC-CBCHHHHG--------------------------------GGTTCEESEEECTTC-CCCCBCTT-----------
T ss_pred Cccc-ccCHHHhh--------------------------------ccccccccEEECCCC-cccccChh-----------
Confidence 6421 11100000 112345556666555 44422222
Q ss_pred CcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccceeeccc
Q 002129 408 GCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSH 487 (962)
Q Consensus 408 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~ 487 (962)
.+..+++|+.+++.++......... +. .....++|++|++++|.+.++.
T Consensus 190 -------~~~~l~~L~~L~l~~~~l~~~~~~~-------------------~~--~~l~~~~L~~L~L~~n~l~~~~--- 238 (680)
T 1ziw_A 190 -------CFHAIGRLFGLFLNNVQLGPSLTEK-------------------LC--LELANTSIRNLSLSNSQLSTTS--- 238 (680)
T ss_dssp -------GGGGSSEECEEECTTCCCHHHHHHH-------------------HH--HHHTTSCCCEEECTTSCCCEEC---
T ss_pred -------hhhhhhhhhhhhccccccChhhHHH-------------------HH--HHhhhccccEEEccCCcccccC---
Confidence 1122223333333222211000000 00 0001245566666665555432
Q ss_pred CCccccCC--CccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCCCCccEEEecCCCCcc--
Q 002129 488 DGLLQDVC--SLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLV-- 563 (962)
Q Consensus 488 ~~~~~~l~--~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~-- 563 (962)
+..+..++ +|++|++++| .+..+.... +..+ ++|+.|++++|...+..|..+..+++|++|++++|....
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 312 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYN-NLNVVGNDS----FAWL-PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTS-CCCEECTTT----TTTC-TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--
T ss_pred hhHhhccCcCCCCEEECCCC-CcCccCccc----ccCc-ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccc
Confidence 22233332 2555555552 333333221 1112 566666666666655566667777777777777643221
Q ss_pred ---ccC-----CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCC-CCcccCCCCCCCCceEEecccCCC
Q 002129 564 ---SFP-----EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDS-LTYIAGVQLPPSLKRLKICHCDNI 634 (962)
Q Consensus 564 ---~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~L~~L~l~~~~~l 634 (962)
.+| .+..+++|++|++++|. +..++...+ ..+++|++|++++|.. +..++...+.
T Consensus 313 ~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~-------------- 376 (680)
T 1ziw_A 313 SLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFV-------------- 376 (680)
T ss_dssp ----CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTG--------------
T ss_pred ccccccccChhhcccCCCCCEEECCCCc-cCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhc--------------
Confidence 122 23445666666666665 333333322 5566666666666431 1111111000
Q ss_pred ccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCC
Q 002129 635 RTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNT 714 (962)
Q Consensus 635 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~ 714 (962)
.... ++|+.|++++|.+.+..|.++..++
T Consensus 377 ---------------~~~~------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 377 ---------------SLAH------------------------------------SPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp ---------------GGTT------------------------------------SCCCEEECTTSCCCEECTTTTTTCT
T ss_pred ---------------cccc------------------------------------CcCceEECCCCCCCeEChhhhhCCC
Confidence 0000 3455555555555554455555555
Q ss_pred CcceEeecCCccccccC-ccccCCCCccEEEcccCCCcccCCCCCCCccccccccccccccc--ccCccccCCCccccee
Q 002129 715 SLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRL--EALPKGLHNLKSLQEL 791 (962)
Q Consensus 715 ~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l--~~~~~~~~~l~~L~~L 791 (962)
+|+.|++++|.+.+.+| ..+.++++|++|++++|......+..+..+++|+.|++++|... +.+|..+.++++|++|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 55555555555444433 34455555555555555322222333333455555555555432 3344455555555555
Q ss_pred ecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHh----ccccccccCccceeecccCCCCCccCCCCCCCCCCCc
Q 002129 792 RIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIE----RGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGT 865 (962)
Q Consensus 792 ~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 865 (962)
++++| .+..++.. ..+++|++|++++|.+....... ....+.++++|++|++++|. ...+|.+
T Consensus 486 ~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~--l~~i~~~-------- 554 (680)
T 1ziw_A 486 DLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG--FDEIPVE-------- 554 (680)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC--CCCCCTT--------
T ss_pred ECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC--CCCCCHH--------
Confidence 55555 23333321 33455555555555543321100 00124556666666666652 2233332
Q ss_pred cccCCCccceEeeccCCCCcccccc-cccCCCcCeEeccCCCCCccCCCCCC---ccccceeeccCCh
Q 002129 866 VLPLPASLTYLRIEGFPNLERLTSS-IVDLQNLTGLVLGNCPKLKYFPEKGL---PSSLLQLSINRCP 929 (962)
Q Consensus 866 ~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~---~~sL~~L~i~~c~ 929 (962)
++..+++|++|++++ +.++.+|.. +..+++|++|++++| +++.++...+ .++|+.|++++||
T Consensus 555 ~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 555 VFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred HcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 134556666666655 455566544 345566666666664 4555554322 2566666666555
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-39 Score=388.69 Aligned_cols=253 Identities=16% Similarity=0.137 Sum_probs=147.6
Q ss_pred cCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCc-ccc
Q 002129 32 FSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPD-SVG 109 (962)
Q Consensus 32 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~~ 109 (962)
++..+|+|++.++.+.... ...+.++++|++|.+.++. ...+++..+ ++++|++|+|++|.++.+|. .|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNT-------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp SCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSC-------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCc-------cCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 4456777777777665432 2446677777777765543 234444444 77777777777777777765 477
Q ss_pred CCCcCcEEEcCCCcccccC-hhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccc-ccc--ccccc
Q 002129 110 DLRYLRYLNLSGTEIRTLP-ESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPV-GIG--RLTCL 185 (962)
Q Consensus 110 ~L~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~-~~~--~L~~L 185 (962)
++++|++|+|++|.++.+| ..|+++++|++|++++|...+..|..++++++|++|++++|. +..++. .++ .+++|
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEE
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccc
Confidence 7777777777777777665 457777777777777765445555667777777777777776 444443 232 34666
Q ss_pred cccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhccc
Q 002129 186 QTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDM 265 (962)
Q Consensus 186 ~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 265 (962)
++|++..+.. ....+..+..+.+|+.+++.++... .. . ...+..
T Consensus 174 ~~L~L~~n~l------------------------------~~~~~~~~~~l~~L~~L~l~~~~l~---~~--~-~~~~~~ 217 (680)
T 1ziw_A 174 KKLELSSNQI------------------------------KEFSPGCFHAIGRLFGLFLNNVQLG---PS--L-TEKLCL 217 (680)
T ss_dssp SEEECTTCCC------------------------------CCBCTTGGGGSSEECEEECTTCCCH---HH--H-HHHHHH
T ss_pred cEEECCCCcc------------------------------cccChhhhhhhhhhhhhhccccccC---hh--h-HHHHHH
Confidence 6665432211 1111223444555555555433211 00 0 000000
Q ss_pred CCCCCCcceEEEeccCCCCC-CccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEEcCCC
Q 002129 266 LKPHTNLEQFCIKGYGGMKF-PTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRGMS 329 (962)
Q Consensus 266 l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 329 (962)
....++|+.|+++++..... |.++.....++|+.|++++|.+....+ .++.+++|++|++++|.
T Consensus 218 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 11236777777777765543 344432112348888888887665554 57777888888887775
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-38 Score=376.43 Aligned_cols=295 Identities=16% Similarity=0.145 Sum_probs=147.8
Q ss_pred CcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCC
Q 002129 469 KLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSL 548 (962)
Q Consensus 469 ~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l 548 (962)
+|++|++++|.++++ +...+..+++|++|++++ +.++.++.. +..+ ++|++|++++|......|..+..+
T Consensus 255 ~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~-n~l~~lp~~-----l~~l-~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQKHYFFNI---SSNTFHCFSGLQELDLTA-THLSELPSG-----LVGL-STLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp EEEEEECTTCCCSSC---CTTTTTTCTTCSEEECTT-SCCSCCCSS-----CCSC-TTCCEEECTTCCCSBGGGGCGGGC
T ss_pred ceeEEEeecCccCcc---CHHHhccccCCCEEeccC-CccCCCChh-----hccc-ccCCEEECccCCcCcCchhhhhcc
Confidence 456666666655443 223344555555555555 234443322 1111 455555555555444444455555
Q ss_pred CCccEEEecCCCCccccCC--CCCCCCCcEEEEcCCCCCCCC--hhhhhcCCCCCccEEEecCCCCCCcccCC-CCCCCC
Q 002129 549 SSLREIEIYGCRSLVSFPE--VALPSKLKKIEISSCDALKSL--PEAWMCDTNSSLEILEISGCDSLTYIAGV-QLPPSL 623 (962)
Q Consensus 549 ~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L 623 (962)
++|++|++++|.....++. +..+++|++|++++|...... +..+ ..+++|++|++++|......+.. ..+++|
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 5555555555544433332 334555555555555422211 1112 44555555555554321111111 223344
Q ss_pred ceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCc
Q 002129 624 KRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKL 703 (962)
Q Consensus 624 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~ 703 (962)
+.|++++|.-....+ +..+. .+ ++|++|++++|...
T Consensus 403 ~~L~l~~n~l~~~~~--------------------------------------~~~~~-----~l-~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDA--------------------------------------QSPFQ-----NL-HLLKVLNLSHSLLD 438 (606)
T ss_dssp SEEECTTCCEECCTT--------------------------------------CCTTT-----TC-TTCCEEECTTCCCB
T ss_pred CeEECCCCcCCCccc--------------------------------------chhhh-----Cc-ccCCEEECCCCccC
Confidence 444444432100000 00011 11 56777777777666
Q ss_pred hhhhhhccCCCCcceEeecCCccccc---cCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCcc
Q 002129 704 ESIAEMLDNNTSLEKINISGCGNLQT---LPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPK 780 (962)
Q Consensus 704 ~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 780 (962)
+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|...+..|..+..+++|+.|++++|...+..|.
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 66666666777777777777665542 124466667777777777644444455555566777777777766666666
Q ss_pred ccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchh
Q 002129 781 GLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNME 821 (962)
Q Consensus 781 ~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~ 821 (962)
.+.++++| +|++++|. +..++.. ..+++|+.+++++|+.
T Consensus 519 ~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 519 ALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp GGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred HhCccccc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCCCc
Confidence 66667777 77777663 3333221 2234455555555443
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-38 Score=376.17 Aligned_cols=126 Identities=20% Similarity=0.225 Sum_probs=89.4
Q ss_pred CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCccccc-ChhhhccC
Q 002129 59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTL-PESVSKLY 135 (962)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~ 135 (962)
+++++|.+.++. ...+++..+ ++++|++|++++|.++.+ |..|+++++|++|+|++|.++.+ |..|++++
T Consensus 32 ~~l~~L~Ls~n~-------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNP-------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCcCEEECCCCC-------cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 577777776653 344555444 788888888888887766 55678888888888888888766 56688888
Q ss_pred CccEEecCCCcchhccc-hhhhccCCCcEEeccCCcccc-cccccccccccccccceee
Q 002129 136 NLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTKSLE-EMPVGIGRLTCLQTLCSFV 192 (962)
Q Consensus 136 ~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~~~~-~lp~~~~~L~~L~~L~~~~ 192 (962)
+|++|++++|. +..+| ..++++++|++|++++|.+.. .+|..++++++|++|++..
T Consensus 105 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 105 SLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp TCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred cCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 88888888754 44443 567888888888888887332 4677777777777775543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-38 Score=372.31 Aligned_cols=509 Identities=15% Similarity=0.119 Sum_probs=271.4
Q ss_pred cccEEEecCCCCccc-CccccCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchhhhccCCCcEEecc
Q 002129 90 SLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNS 167 (962)
Q Consensus 90 ~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 167 (962)
.+++|+|++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++++|...+..|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 578888888888866 56788888888888888888766 5668888888888888865555556778888888888888
Q ss_pred CCcccccc-cccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEe
Q 002129 168 NTKSLEEM-PVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRW 246 (962)
Q Consensus 168 ~n~~~~~l-p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (962)
+|. +..+ |..++++++|++|++..+..
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L~L~~n~l--------------------------------------------------- 141 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESLYLGSNHI--------------------------------------------------- 141 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEEECCSSCC---------------------------------------------------
T ss_pred ccC-cccCCcchhccCCcccEEECCCCcc---------------------------------------------------
Confidence 887 5554 44466666666664432110
Q ss_pred ecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCC-ccccCCCCCCce--EEEEecCCCCCCCCCCCCCCCCCeE
Q 002129 247 TLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFP-TWLGDSSFSKLV--TLKFKNCDMCTALPSVGQLPSLKHL 323 (962)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~--~L~L~~~~~~~~l~~l~~l~~L~~L 323 (962)
... ....+..+++|+.|++++|....++ .++. .+++|+ .|++++|.+.+..+.......|++|
T Consensus 142 ---~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L 207 (606)
T 3t6q_A 142 ---SSI---------KLPKGFPTEKLKVLDFQNNAIHYLSKEDMS--SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207 (606)
T ss_dssp ---CCC---------CCCTTCCCTTCCEEECCSSCCCEECHHHHH--TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred ---ccc---------CcccccCCcccCEEEcccCcccccChhhhh--hhcccceeEEecCCCccCccChhHhhhcccccc
Confidence 000 0011111334444444444444332 2222 355555 5666666655555544444566666
Q ss_pred EEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccccC--CCccEEEeccCCcccccCCCCCCCc
Q 002129 324 TVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERF--PKLRELRILRCSKLKGTFPEHLPAL 401 (962)
Q Consensus 324 ~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~~p~~l~~L 401 (962)
++++|..+....... .-..++.+.+..+............ ...+ .+|+.|++++| .++ .++..
T Consensus 208 ~l~~~~~~~~~~~~l-------~~~~l~~l~~~~~~~~~~~~i~~~~--~~~l~~~~L~~L~l~~n-~l~-~~~~~---- 272 (606)
T 3t6q_A 208 NFGGTQNLLVIFKGL-------KNSTIQSLWLGTFEDMDDEDISPAV--FEGLCEMSVESINLQKH-YFF-NISSN---- 272 (606)
T ss_dssp ECTTCSCHHHHHHHT-------TTCEEEEEECCCCTTSCCCCCCGGG--GGGGGGSEEEEEECTTC-CCS-SCCTT----
T ss_pred ccCCchhHHHHhhhc-------cccchhheechhhccccccccChhH--hchhhcCceeEEEeecC-ccC-ccCHH----
Confidence 666664322111000 0011222222222111110000000 0111 14555555555 333 22210
Q ss_pred cEEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccc
Q 002129 402 EMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQT 481 (962)
Q Consensus 402 ~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 481 (962)
.+..+++|++|++++|..... . .....+++|++|++++|.+.
T Consensus 273 -------------~~~~l~~L~~L~l~~n~l~~l------------------------p-~~l~~l~~L~~L~l~~n~l~ 314 (606)
T 3t6q_A 273 -------------TFHCFSGLQELDLTATHLSEL------------------------P-SGLVGLSTLKKLVLSANKFE 314 (606)
T ss_dssp -------------TTTTCTTCSEEECTTSCCSCC------------------------C-SSCCSCTTCCEEECTTCCCS
T ss_pred -------------HhccccCCCEEeccCCccCCC------------------------C-hhhcccccCCEEECccCCcC
Confidence 223333444444443331110 0 00122344444444444443
Q ss_pred eeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCc-cCCCCCCccEEEecCCC
Q 002129 482 YIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQ-SSLSLSSLREIEIYGCR 560 (962)
Q Consensus 482 ~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~-~~~~l~~L~~L~l~~~~ 560 (962)
.+. +..+..+ ++|++|++++|.....+|. .+..+++|++|++++|.
T Consensus 315 ~~~---~~~~~~l------------------------------~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 315 NLC---QISASNF------------------------------PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp BGG---GGCGGGC------------------------------TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred cCc---hhhhhcc------------------------------CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 221 1122333 4555555555544433332 25555666666666544
Q ss_pred Ccccc--C-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccC--CCCCCCCceEEecccCCCc
Q 002129 561 SLVSF--P-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAG--VQLPPSLKRLKICHCDNIR 635 (962)
Q Consensus 561 ~l~~~--~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~ 635 (962)
..... + .+..+++|++|++++|......+..+ ..+++|++|++++|......+. ...+++|+.|++++|.--.
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred cccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence 33221 1 24445566666666655322222222 4556666666666433222222 1233455555555543111
Q ss_pred cccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchhh---hhhccC
Q 002129 636 TLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESI---AEMLDN 712 (962)
Q Consensus 636 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~---~~~~~~ 712 (962)
..+ ..+. .+ ++|++|++++|.+.+.. +..+..
T Consensus 440 ~~~---------------------------------------~~~~-----~l-~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 440 SSE---------------------------------------QLFD-----GL-PALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp TCT---------------------------------------TTTT-----TC-TTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred cCH---------------------------------------HHHh-----CC-CCCCEEECCCCCCCccccccchhhcc
Confidence 101 0011 11 67888888888776632 256778
Q ss_pred CCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccceee
Q 002129 713 NTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELR 792 (962)
Q Consensus 713 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~ 792 (962)
+++|++|++++|.+.+..|..+.++++|++|++++|......|..+..+++| .|++++|...+..|..+..+++|+.|+
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence 8888888888888777777888888888888888886555566666667788 888888887766677788889999999
Q ss_pred cCCCCC
Q 002129 793 IGKGVA 798 (962)
Q Consensus 793 l~~~~~ 798 (962)
+++|+.
T Consensus 554 l~~N~~ 559 (606)
T 3t6q_A 554 LRQNPL 559 (606)
T ss_dssp CTTCCE
T ss_pred CCCCCc
Confidence 999864
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5e-37 Score=363.20 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=81.6
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccC-ccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA 768 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~ 768 (962)
++|++|++++|...+ +|..+..+++|++|++++|...+..| ..+.++++|++|++++|......|..+..+++|++|+
T Consensus 376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 456666666665333 44556666666666666666555544 4556666666666666654444555555556666666
Q ss_pred cccccccc-cCccccCCCcccceeecCCCCCCCCCCC-CCCCCccceEeecCchhhhHHHHhccccccccCccceeeccc
Q 002129 769 IYNCKRLE-ALPKGLHNLKSLQELRIGKGVALPSLEE-DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMN 846 (962)
Q Consensus 769 l~~c~~l~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 846 (962)
+++|...+ .+|..++.+++|++|++++|......+. ...+++|++|++++|.+....+ ..+..+++|++|++++
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSF 530 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG----GGTTTCTTCCEEECTT
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH----HHccCCCcCCEEECCC
Confidence 66666444 2455566666666666666632222221 1233444444444444433222 2344455555555555
Q ss_pred C
Q 002129 847 C 847 (962)
Q Consensus 847 ~ 847 (962)
|
T Consensus 531 N 531 (606)
T 3vq2_A 531 N 531 (606)
T ss_dssp S
T ss_pred C
Confidence 4
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=353.56 Aligned_cols=112 Identities=19% Similarity=0.070 Sum_probs=83.3
Q ss_pred CcccccccccCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCC-ccccc-ChhhhccCCccEEecCCCcchhccchh
Q 002129 78 APSMLPKLLKLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGT-EIRTL-PESVSKLYNLHSLLLEDCDRLEKLCAD 154 (962)
Q Consensus 78 ~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n-~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~ 154 (962)
...+|. -.++|++|+|++|.|+.+ |..|+++++|++|+|++| .+..+ |..|+++++|++|+|++|...+..|..
T Consensus 16 L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 16 LTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 344554 446888888888888866 677888888888888888 44566 566888888888888886555555778
Q ss_pred hhccCCCcEEeccCCccccccccc--ccccccccccceee
Q 002129 155 MGNLVKLHHLKNSNTKSLEEMPVG--IGRLTCLQTLCSFV 192 (962)
Q Consensus 155 i~~L~~L~~L~l~~n~~~~~lp~~--~~~L~~L~~L~~~~ 192 (962)
|+++++|++|++++|.+.+.+|.. ++++++|++|++..
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC
Confidence 888888888888888844445554 77777777776543
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=337.67 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=80.5
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccc-cccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNL-QTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA 768 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~ 768 (962)
++|++|++++|...+..+..+.++++|++|++++|... +.+|..+..+++|++|++++|......|..+..+++|++|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 57777777777777777777778888888888887766 45677777788888888888754444466666677788888
Q ss_pred cccccccccCccccCCCcccceeecCCCCCCC
Q 002129 769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALP 800 (962)
Q Consensus 769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~ 800 (962)
+++|...+..|..+.++++|++|++++|+...
T Consensus 501 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 88877555555567777888888888775443
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.4e-34 Score=331.92 Aligned_cols=145 Identities=21% Similarity=0.180 Sum_probs=96.7
Q ss_pred cCccEEEecCCCCchhhh--hhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129 690 PSLKLLLVWGCSKLESIA--EMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML 767 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L 767 (962)
++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++| .++.+|.... ++|+.|
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~~--~~L~~L 436 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST-GIRVVKTCIP--QTLEVL 436 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTS-CCSCCCTTSC--TTCSEE
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCC-Ccccccchhc--CCceEE
Confidence 578888888887665432 55788888888888887654 67777888888888888888 4666665432 478888
Q ss_pred ccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129 768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC 847 (962)
Q Consensus 768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 847 (962)
++++|...+ ++ ..+++|++|++++| .++.+|....+++|++|++++|.+....+ ..+..+++|++|++++|
T Consensus 437 ~Ls~N~l~~-~~---~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 437 DVSNNNLDS-FS---LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPD----GIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp ECCSSCCSC-CC---CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSCCCCCCT----TGGGGCTTCCEEECCSS
T ss_pred ECCCCChhh-hc---ccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCccCCcCH----HHHhcCcccCEEEecCC
Confidence 888886433 22 46778888888887 55566655455666666666665543322 23455555555555554
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-33 Score=340.12 Aligned_cols=513 Identities=18% Similarity=0.144 Sum_probs=277.6
Q ss_pred CCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCC-Cccc-CccccCCCcCcEEEcCCCccccc-Chhhh
Q 002129 57 DIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYR-ILEL-PDSVGDLRYLRYLNLSGTEIRTL-PESVS 132 (962)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~-i~~l-p~~~~~L~~L~~L~Ls~n~i~~l-p~~i~ 132 (962)
-.+++++|.+..+. ...+++..+ ++++|++|+|++|. +..+ |..|+++++|++|+|++|.++.+ |..|+
T Consensus 22 lp~~l~~LdLs~N~-------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCC-------CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCc-------CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 34688999887654 344444444 99999999999985 4566 77899999999999999999876 67799
Q ss_pred ccCCccEEecCCCcchhccchh--hhccCCCcEEeccCCcccccc-c-ccccccccccccceeeecCCCCCCcccccccc
Q 002129 133 KLYNLHSLLLEDCDRLEKLCAD--MGNLVKLHHLKNSNTKSLEEM-P-VGIGRLTCLQTLCSFVVGKDSGSGLRELKLLT 208 (962)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~l~~n~~~~~l-p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~ 208 (962)
++++|++|++++|...+.+|.. ++++++|++|++++|. +..+ | ..++++++|++|++..+....
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~----------- 162 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFL----------- 162 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCC-----------
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCe-----------
Confidence 9999999999997655656665 8899999999999998 4444 3 358888888888654321100
Q ss_pred cccceeEEecCCCCcchhhhhhhccCCC--CCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCC
Q 002129 209 QLRGTLCISNLENVKHIVDAEDAQLDRK--ENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFP 286 (962)
Q Consensus 209 ~L~~~l~~~~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p 286 (962)
..+..+..+ ++|+.|++++|.... ..|
T Consensus 163 -------------------~~~~~l~~l~~~~L~~L~L~~n~l~~--------------------------------~~~ 191 (844)
T 3j0a_A 163 -------------------VCEHELEPLQGKTLSFFSLAANSLYS--------------------------------RVS 191 (844)
T ss_dssp -------------------CCSGGGHHHHHCSSCCCEECCSBSCC--------------------------------CCC
T ss_pred -------------------eCHHHcccccCCccceEECCCCcccc--------------------------------ccc
Confidence 000011111 455555555443211 111
Q ss_pred ccccC----CCCCCceEEEEecCCCCCCCC-CC---CCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCc
Q 002129 287 TWLGD----SSFSKLVTLKFKNCDMCTALP-SV---GQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDL 358 (962)
Q Consensus 287 ~~~~~----~~l~~L~~L~L~~~~~~~~l~-~l---~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~ 358 (962)
..+.. .....|+.|++++|.+....+ .+ ...+.++.|.+..+...... + +.+++.
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~-----~------~~~l~~------ 254 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF-----G------FHNIKD------ 254 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS-----S------CSSSTT------
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc-----c------ccccCC------
Confidence 11110 001136666666665444333 11 12245556655432110000 0 011100
Q ss_pred ccccccccCCCCcccccCCCccEEEeccCCcccccCC---CCCCCccEEEEcCcccccc---cCCCCCcceEEEEccCCC
Q 002129 359 QEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFP---EHLPALEMLVIEGCEELLV---SVSSLPALCKFIISGCKK 432 (962)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~l~~L~~L~l~~~~~l~~---~~~~l~~L~~L~l~~~~~ 432 (962)
...... .....++|+.|++++| .+.+..| ..+++|+.|++++|..... .+..+++|+.|++++|..
T Consensus 255 -----~~~~~f--~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 255 -----PDQNTF--AGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp -----GGGTTT--TTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred -----CChhhh--hccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 000000 0112356777777776 4442333 2334444444444432211 334445555555555442
Q ss_pred ceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccc
Q 002129 433 VVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLV 512 (962)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 512 (962)
.. .....+..+++|++|++++|.+..+. ...+..+
T Consensus 327 ~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~l------------------ 361 (844)
T 3j0a_A 327 GE------------------------LYSSNFYGLPKVAYIDLQKNHIAIIQ---DQTFKFL------------------ 361 (844)
T ss_dssp SC------------------------CCSCSCSSCTTCCEEECCSCCCCCCC---SSCSCSC------------------
T ss_pred Cc------------------------cCHHHhcCCCCCCEEECCCCCCCccC---hhhhcCC------------------
Confidence 11 11112234455555555555443321 2223344
Q ss_pred hhhhHHHHHHHHhhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhh
Q 002129 513 AEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAW 592 (962)
Q Consensus 513 ~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 592 (962)
++|+.|++++|... .+ ..+++|+.|++++|+ ++.+|.. ..+++.|++++|. ++.++...
T Consensus 362 ------------~~L~~L~Ls~N~l~-~i----~~~~~L~~L~l~~N~-l~~l~~~--~~~l~~L~ls~N~-l~~l~~~~ 420 (844)
T 3j0a_A 362 ------------EKLQTLDLRDNALT-TI----HFIPSIPDIFLSGNK-LVTLPKI--NLTANLIHLSENR-LENLDILY 420 (844)
T ss_dssp ------------CCCCEEEEETCCSC-CC----SSCCSCSEEEEESCC-CCCCCCC--CTTCCEEECCSCC-CCSSTTHH
T ss_pred ------------CCCCEEECCCCCCC-cc----cCCCCcchhccCCCC-ccccccc--ccccceeecccCc-cccCchhh
Confidence 44555555554432 12 225667777777653 3344432 4567777777776 44444333
Q ss_pred hcCCCCCccEEEecCCCCCCcccCC---CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccc
Q 002129 593 MCDTNSSLEILEISGCDSLTYIAGV---QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTC 669 (962)
Q Consensus 593 ~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 669 (962)
+...+++|++|++++|. ++.++.. ...++|+.|+++++. +..++
T Consensus 421 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~------------------------------- 467 (844)
T 3j0a_A 421 FLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENM-LQLAW------------------------------- 467 (844)
T ss_dssp HHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCC-CSSSC-------------------------------
T ss_pred hhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCc-ccccc-------------------------------
Confidence 22567778888887754 3322221 223556666665542 11111
Q ss_pred cccCCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCC
Q 002129 670 IFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCG 749 (962)
Q Consensus 670 ~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 749 (962)
+.+..+..+.. + ++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+. ++|+.|++++|.
T Consensus 468 --~~~~~~~~~~~-----l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 468 --ETELCWDVFEG-----L-SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ 537 (844)
T ss_dssp --CSCCCSSCSSC-----B-CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred --ccccchhhhcC-----c-ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence 00000111111 1 6778888888877777777778888888888888776554444443 778888888874
Q ss_pred CcccCCCCCCCcccccccccccccccc
Q 002129 750 NLVSSPEGGLPCAKLAMLAIYNCKRLE 776 (962)
Q Consensus 750 ~l~~~~~~~~~~~~L~~L~l~~c~~l~ 776 (962)
..+..|. . +++|+.|++++|+...
T Consensus 538 l~~~~~~-~--~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 538 LLAPNPD-V--FVSLSVLDITHNKFIC 561 (844)
T ss_dssp CCCCCSC-C--CSSCCEEEEEEECCCC
T ss_pred CCCCChh-H--hCCcCEEEecCCCccc
Confidence 4333333 2 2377788888777543
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.6e-34 Score=335.68 Aligned_cols=209 Identities=19% Similarity=0.161 Sum_probs=143.5
Q ss_pred cccccccccCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccC-hhhhccCCccEEecCCCcchhccchhhh
Q 002129 79 PSMLPKLLKLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLP-ESVSKLYNLHSLLLEDCDRLEKLCADMG 156 (962)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~ 156 (962)
..+|+.++ ++|++|+|++|.++.+ |..|+++++|++|+|++|+++.+| ..|+++++|++|++++|...+..|..|+
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 45555544 6788888888888866 567888888888888888888775 5688888888888888644343344588
Q ss_pred ccCCCcEEeccCCcccc--cccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccC
Q 002129 157 NLVKLHHLKNSNTKSLE--EMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLD 234 (962)
Q Consensus 157 ~L~~L~~L~l~~n~~~~--~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 234 (962)
++++|++|++++|. +. ..|..++++++|++|++..+... .......+.
T Consensus 96 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------------------------~~~~~~~~~ 145 (549)
T 2z81_A 96 PLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETF-----------------------------SEIRRIDFA 145 (549)
T ss_dssp TCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------------CEECTTTTT
T ss_pred cCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccc-----------------------------cccCHhhhh
Confidence 88888888888887 44 34566888888888866443210 011112356
Q ss_pred CCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCC----
Q 002129 235 RKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTA---- 310 (962)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~---- 310 (962)
++++|++|++++|.... .....+..+++|+.|++.++....+|.++.. .+++|+.|++++|.+.+.
T Consensus 146 ~l~~L~~L~L~~n~l~~---------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 215 (549)
T 2z81_A 146 GLTSLNELEIKALSLRN---------YQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSP 215 (549)
T ss_dssp TCCEEEEEEEEETTCCE---------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCC
T ss_pred cccccCeeeccCCcccc---------cChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccc
Confidence 66777777877665321 1234556677788888888877777776643 478888888888876653
Q ss_pred CCCCCCCCCCCeEEEcCCC
Q 002129 311 LPSVGQLPSLKHLTVRGMS 329 (962)
Q Consensus 311 l~~l~~l~~L~~L~L~~~~ 329 (962)
.+....+++|+.|+++++.
T Consensus 216 ~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 216 LPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp CSSCCCCCCCCEEEEESCE
T ss_pred cchhhhhhcccceeccccc
Confidence 1234456778888877763
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6e-33 Score=326.10 Aligned_cols=106 Identities=18% Similarity=0.074 Sum_probs=58.2
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccC-ccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA 768 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~ 768 (962)
++|++|++++|...+..+. +..+++|++|++++|...+..+ ..+.++++|++|++++|......|..+..+++|++|+
T Consensus 373 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 4566666666554443333 5566666666666655544433 3455566666666666644444444444455666666
Q ss_pred ccccccc-ccCccccCCCcccceeecCCC
Q 002129 769 IYNCKRL-EALPKGLHNLKSLQELRIGKG 796 (962)
Q Consensus 769 l~~c~~l-~~~~~~~~~l~~L~~L~l~~~ 796 (962)
+++|... +.+|..+..+++|++|++++|
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCC
Confidence 6666543 245555555666666666655
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.1e-33 Score=329.28 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=86.9
Q ss_pred cCccEEEecCCCCchhhhhhcc--CCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLD--NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML 767 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L 767 (962)
++|++|++++|.+. .+|..+. .+++|+.|+|++|.+.+ +|..+.++++|+.|+|++|+
T Consensus 728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------ 787 (876)
T 4ecn_A 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------ 787 (876)
T ss_dssp GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------
T ss_pred CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------
Confidence 47888888888766 6777776 88999999999988766 78888889999999998874
Q ss_pred ccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhh
Q 002129 768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIW 823 (962)
Q Consensus 768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~ 823 (962)
++++|...+.+|..+.++++|+.|++++|.. ..+|.. ..++|+.|++++|++..
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 5566776777787888888888888888744 667665 34678888888877654
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.8e-32 Score=312.14 Aligned_cols=221 Identities=19% Similarity=0.161 Sum_probs=149.2
Q ss_pred hhcceeecccccCccccCccC-----CCCCCccEEEecCCCCccccCC--CCC---CCCCcEEEEcCCCCCCCChhhhhc
Q 002129 525 ELLEYLRLSYCEGLVKLPQSS-----LSLSSLREIEIYGCRSLVSFPE--VAL---PSKLKKIEISSCDALKSLPEAWMC 594 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~-----~~l~~L~~L~l~~~~~l~~~~~--~~~---~~~L~~L~l~~~~~l~~~~~~~~~ 594 (962)
++|++|++++|...+.+|..+ ..+++|+.+++++|.. .+|. ... ..+|+.|++++|.. ..++. .
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~--~- 320 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLC--P- 320 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC-CCCCC--C-
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc-ccccc--h-
Confidence 578888888888776788777 7778888888877654 3441 111 14577777777663 22221 0
Q ss_pred CCCCCccEEEecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCC
Q 002129 595 DTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKN 674 (962)
Q Consensus 595 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 674 (962)
..+++|++|++++|.....++.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~---------------------------------------------------------- 342 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFE---------------------------------------------------------- 342 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT----------------------------------------------------------
T ss_pred hhCCcccEEEeECCccChhhhh----------------------------------------------------------
Confidence 3455666666666432111111
Q ss_pred CccccccccccCCCccCccEEEecCCCCch--hhhhhccCCCCcceEeecCCccccccCcc-ccCCCCccEEEcccCCCc
Q 002129 675 ELPATLESLEVGNLPPSLKLLLVWGCSKLE--SIAEMLDNNTSLEKINISGCGNLQTLPSG-LHNLCQLQEISIASCGNL 751 (962)
Q Consensus 675 ~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~l 751 (962)
.+ +.+ ++|++|++++|.+.+ .+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|...
T Consensus 343 ----~~-----~~l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 343 ----NC-----GHL-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp ----TC-----CCC-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred ----hh-----ccC-CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 00 011 678888888888776 56677888888888998888877756654 677888899999888655
Q ss_pred ccCCCCCCCcccccccccccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhh
Q 002129 752 VSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIW 823 (962)
Q Consensus 752 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~ 823 (962)
+.+|.... ++|+.|++++|. +..+|..+..+++|++|++++| .++.+|.. ..+++|++|++++|+..-
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence 55555433 588889998887 4578887778889999999888 56666653 446778888888777543
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-31 Score=317.75 Aligned_cols=124 Identities=21% Similarity=0.249 Sum_probs=91.2
Q ss_pred ceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccChh-hhccCC
Q 002129 60 HLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPES-VSKLYN 136 (962)
Q Consensus 60 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~ 136 (962)
.+++|.+..+. ...+++..| ++++|++|+|++|.|+.+| .+|+++++|++|+|++|+|+.+|.. |+++++
T Consensus 53 ~~~~LdLs~N~-------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCCC-------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 67888776653 456666655 8888888888888888775 4678888888888888888888754 788888
Q ss_pred ccEEecCCCcchhccch-hhhccCCCcEEeccCCcccc--cccccccccccccccceee
Q 002129 137 LHSLLLEDCDRLEKLCA-DMGNLVKLHHLKNSNTKSLE--EMPVGIGRLTCLQTLCSFV 192 (962)
Q Consensus 137 L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n~~~~--~lp~~~~~L~~L~~L~~~~ 192 (962)
|++|++++| .+..+|. .|++|++|++|++++|. +. .+|..++.+++|++|++..
T Consensus 126 L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 126 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccC
Confidence 888888885 4555554 47888888888888887 44 3456677788888776543
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.6e-32 Score=320.32 Aligned_cols=111 Identities=21% Similarity=0.223 Sum_probs=77.4
Q ss_pred cCccEEEecCCCCchhhhhhcc--CCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLD--NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML 767 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L 767 (962)
++|++|++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..+.++++|++|++++|+
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------------ 547 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------------ 547 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB------------------
T ss_pred CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc------------------
Confidence 47888888888776 6676666 88899999999888776 78888888999999987663
Q ss_pred ccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhh
Q 002129 768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEI 822 (962)
Q Consensus 768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~ 822 (962)
++++|...+.+|..+..+++|++|++++|. ++.+|.. ..++|++|++++|++.
T Consensus 548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 548 DAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCTTC
T ss_pred ccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCCCc
Confidence 344555555666666666666666666663 3555543 2256666666666543
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=310.84 Aligned_cols=104 Identities=21% Similarity=0.188 Sum_probs=55.3
Q ss_pred cCccEEEecCCCCchhhhh-hccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAE-MLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA 768 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~ 768 (962)
++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..+. ++|++|++++| .++.+|.....+++|++|+
T Consensus 374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELN 450 (520)
T ss_dssp TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEE
Confidence 3444444444444443332 244455555555555555444444332 45666666655 4445555544555666666
Q ss_pred cccccccccCccc-cCCCcccceeecCCCC
Q 002129 769 IYNCKRLEALPKG-LHNLKSLQELRIGKGV 797 (962)
Q Consensus 769 l~~c~~l~~~~~~-~~~l~~L~~L~l~~~~ 797 (962)
+++|. +..+|.. +..+++|++|++++|+
T Consensus 451 L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 451 VASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 66665 3345544 5666777777777764
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.3e-32 Score=319.67 Aligned_cols=371 Identities=18% Similarity=0.172 Sum_probs=184.9
Q ss_pred CcccccChhhhccCCccEEecCCCcchhc-----------------cchhhh--ccCCCcEEeccCCccccccccccccc
Q 002129 122 TEIRTLPESVSKLYNLHSLLLEDCDRLEK-----------------LCADMG--NLVKLHHLKNSNTKSLEEMPVGIGRL 182 (962)
Q Consensus 122 n~i~~lp~~i~~L~~L~~L~L~~~~~~~~-----------------lp~~i~--~L~~L~~L~l~~n~~~~~lp~~~~~L 182 (962)
|+++.+|+.|+++++|++|++++|...+. +|+.++ ++++|++|++++|.+.+.+|..++++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 45555666677777777777776543332 666666 77777777777776566666666666
Q ss_pred ccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhh-hhhhccCCCCCCCcEEEEeecCCCCchhhhhHhh
Q 002129 183 TCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVD-AEDAQLDRKENLKELWLRWTLYGSYSREAETEMG 261 (962)
Q Consensus 183 ~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 261 (962)
++|++|++..+.. ... ..+..+.
T Consensus 273 ~~L~~L~Ls~n~~-----------------------------l~~~~lp~~~~--------------------------- 296 (636)
T 4eco_A 273 PEMQLINVACNRG-----------------------------ISGEQLKDDWQ--------------------------- 296 (636)
T ss_dssp SSCCEEECTTCTT-----------------------------SCHHHHHHHHH---------------------------
T ss_pred CCCCEEECcCCCC-----------------------------CccccchHHHH---------------------------
Confidence 6666664422110 000 0111010
Q ss_pred hcccCCCCCCcceEEEeccCCCCCCc--cccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCCCceeeCcccc
Q 002129 262 VLDMLKPHTNLEQFCIKGYGGMKFPT--WLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFY 339 (962)
Q Consensus 262 ~l~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~ 339 (962)
.+..+..+++|++|+++++....+|. ++. .+++|++|++++|.+.+.+|.++.+++|++|++++|.. ..++..+
T Consensus 297 ~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l-~~lp~~l- 372 (636)
T 4eco_A 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI-TEIPANF- 372 (636)
T ss_dssp HHHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEE-EECCTTS-
T ss_pred hhhccccCCCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcc-ccccHhh-
Confidence 00111223455566666666666676 555 47777777777777665666667777777777776642 2222111
Q ss_pred CCCCCCCCCC-cceeeccCcccccccccCCCCcccccCCCccEEEeccCCcccccCCCCCCCccEEEEcCcccccccCCC
Q 002129 340 GDDSPIPFPR-LETLRFEDLQEWEDSIPHGSSQGVERFPKLRELRILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSS 418 (962)
Q Consensus 340 ~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~ 418 (962)
..+++ |+.|++.++. +.. ++... ....+++|++|++++| .+++.+|..++.. ......
T Consensus 373 -----~~l~~~L~~L~Ls~N~-l~~-lp~~~--~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~-----------~~~~~~ 431 (636)
T 4eco_A 373 -----CGFTEQVENLSFAHNK-LKY-IPNIF--DAKSVSVMSAIDFSYN-EIGSVDGKNFDPL-----------DPTPFK 431 (636)
T ss_dssp -----EEECTTCCEEECCSSC-CSS-CCSCC--CTTCSSCEEEEECCSS-CTTTTTTCSSCTT-----------CSSCCC
T ss_pred -----hhhcccCcEEEccCCc-Ccc-cchhh--hhcccCccCEEECcCC-cCCCcchhhhccc-----------cccccc
Confidence 11333 4444444322 111 11000 0112335555555555 3433344321100 000013
Q ss_pred CCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCcc
Q 002129 419 LPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLK 498 (962)
Q Consensus 419 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~ 498 (962)
+++|+.|++++|.... +....+..+++|++|++++|.++
T Consensus 432 ~~~L~~L~Ls~N~l~~------------------------lp~~~~~~l~~L~~L~Ls~N~l~----------------- 470 (636)
T 4eco_A 432 GINVSSINLSNNQISK------------------------FPKELFSTGSPLSSINLMGNMLT----------------- 470 (636)
T ss_dssp CCCEEEEECCSSCCCS------------------------CCTHHHHTTCCCSEEECCSSCCS-----------------
T ss_pred CCCCCEEECcCCccCc------------------------CCHHHHccCCCCCEEECCCCCCC-----------------
Confidence 3455555555544221 01111123445555555555444
Q ss_pred EEEEcCCCCccccchhhhHHH---HHHHHhhcceeecccccCccccCccCC--CCCCccEEEecCCCCccccC-CCCCCC
Q 002129 499 SLEIRSCPKLQSLVAEEEKDQ---QQQLYELLEYLRLSYCEGLVKLPQSSL--SLSSLREIEIYGCRSLVSFP-EVALPS 572 (962)
Q Consensus 499 ~L~l~~c~~l~~l~~~~~~~~---~~~l~~~L~~L~ls~~~~l~~~~~~~~--~l~~L~~L~l~~~~~l~~~~-~~~~~~ 572 (962)
.++...+... +.. +++|+.|++++|... .+|..+. .+++|++|++++|.... +| .+..++
T Consensus 471 -----------~i~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~ 536 (636)
T 4eco_A 471 -----------EIPKNSLKDENENFKN-TYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536 (636)
T ss_dssp -----------BCCSSSSEETTEECTT-GGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS
T ss_pred -----------CcCHHHhccccccccc-cCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC
Confidence 3332211000 000 025666666665543 5555554 66666666666654333 44 344566
Q ss_pred CCcEEEEc------CCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCCceEEecccC
Q 002129 573 KLKKIEIS------SCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCD 632 (962)
Q Consensus 573 ~L~~L~l~------~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 632 (962)
+|++|+++ +|...+.+|..+ ..+++|++|++++|.. +.+|.. ..++|+.|++++|+
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCT
T ss_pred CCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCC
Confidence 66666663 444455555554 5567777777777543 666654 33677777777764
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=2.1e-30 Score=309.18 Aligned_cols=111 Identities=24% Similarity=0.242 Sum_probs=93.2
Q ss_pred CcccccccccCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccch-h
Q 002129 78 APSMLPKLLKLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCA-D 154 (962)
Q Consensus 78 ~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~-~ 154 (962)
..++|+++- ..+++|||++|.|+.+| .+|.++++||+|+|++|+|+.+|+ .|++|++|++|+|++| .+..+|. .
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~ 119 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGA 119 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGG
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHH
Confidence 345565442 47899999999999986 579999999999999999999975 5999999999999995 5777765 5
Q ss_pred hhccCCCcEEeccCCccccccccc-ccccccccccceee
Q 002129 155 MGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFV 192 (962)
Q Consensus 155 i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~ 192 (962)
|++|++|++|++++|. +..+|.. |+++++|++|++..
T Consensus 120 f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp GTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCS
T ss_pred hcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeecccc
Confidence 8999999999999998 7777765 88899998886543
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.7e-30 Score=309.74 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=38.6
Q ss_pred ccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCC
Q 002129 533 SYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDA 584 (962)
Q Consensus 533 s~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~ 584 (962)
++|...+.+|..+..+++|+.|++++|.. +.+|.. ..++|+.|++++|+.
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTT
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCC
Confidence 34666777888888899999999998766 777754 346888888888873
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.5e-29 Score=295.17 Aligned_cols=129 Identities=20% Similarity=0.165 Sum_probs=79.5
Q ss_pred cCccEEEecCCCCch--hhhhhccCCCCcceEeecCCccccccCc-cccCCCCccEEEcccCCCcccCCCCCCCcccccc
Q 002129 690 PSLKLLLVWGCSKLE--SIAEMLDNNTSLEKINISGCGNLQTLPS-GLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAM 766 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~ 766 (962)
++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|...+.+|.... ++|+.
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~ 454 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence 466666666666554 3445566777777777777666654443 355667777777777654444443322 46777
Q ss_pred cccccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhh
Q 002129 767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEI 822 (962)
Q Consensus 767 L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~ 822 (962)
|++++|. +..+|..+..+++|++|++++| .++.+|.. ..+++|+.|++++|+..
T Consensus 455 L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 455 LDLHNNR-IMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp EECCSSC-CCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred EECCCCc-CcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 7777775 4566666667777777777776 44455542 44566777777776654
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.8e-29 Score=292.98 Aligned_cols=120 Identities=24% Similarity=0.192 Sum_probs=76.1
Q ss_pred CceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCccccc-ChhhhccCC
Q 002129 59 QHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTL-PESVSKLYN 136 (962)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~ 136 (962)
...+++.+.++. ...+|.+++ ++|++|++++|.++.+| ..|+++++|++|+|++|.++.+ |..|+++++
T Consensus 31 ~~~~~l~ls~~~-------L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 31 ELESMVDYSNRN-------LTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp --CCEEECTTSC-------CCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred CCCcEEEcCCCC-------CccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 334556554432 334555443 67777777777777664 4677777777777777777766 455777777
Q ss_pred ccEEecCCCcchhccchhhhccCCCcEEeccCCccccccc--cccccccccccccee
Q 002129 137 LHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMP--VGIGRLTCLQTLCSF 191 (962)
Q Consensus 137 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~~~ 191 (962)
|++|++++| .+..+|.. .+++|++|++++|. +..+| ..++++++|++|++.
T Consensus 102 L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~ 154 (562)
T 3a79_B 102 LEYLDVSHN-RLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLS 154 (562)
T ss_dssp CCEEECTTS-CCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEE
T ss_pred CCEEECCCC-cCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecC
Confidence 777777774 45567665 67777777777776 44433 456666666666543
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.7e-29 Score=283.78 Aligned_cols=116 Identities=25% Similarity=0.284 Sum_probs=66.2
Q ss_pred ccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCC
Q 002129 492 QDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALP 571 (962)
Q Consensus 492 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 571 (962)
..+++|++|++++ +.++.++.. +++|++|++++|... .+|. +..+++|++|++++|. ++.+|. .+
T Consensus 192 ~~l~~L~~L~l~~-N~l~~l~~~---------~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~-l~~l~~--~~ 256 (454)
T 1jl5_A 192 QNLPFLTAIYADN-NSLKKLPDL---------PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL-LKTLPD--LP 256 (454)
T ss_dssp TTCTTCCEEECCS-SCCSSCCCC---------CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC-CSSCCS--CC
T ss_pred cCCCCCCEEECCC-CcCCcCCCC---------cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc-CCcccc--cc
Confidence 4455555555555 233333322 156777777776543 5663 6777888888888753 444553 34
Q ss_pred CCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCCceEEeccc
Q 002129 572 SKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHC 631 (962)
Q Consensus 572 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~ 631 (962)
++|++|++++|. ++.+|. ..++|++|++++| .++.++. .+++|+.|++++|
T Consensus 257 ~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~ls~N-~l~~l~~--~~~~L~~L~l~~N 307 (454)
T 1jl5_A 257 PSLEALNVRDNY-LTDLPE-----LPQSLTFLDVSEN-IFSGLSE--LPPNLYYLNASSN 307 (454)
T ss_dssp TTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCSEESC--CCTTCCEEECCSS
T ss_pred cccCEEECCCCc-ccccCc-----ccCcCCEEECcCC-ccCcccC--cCCcCCEEECcCC
Confidence 677777777776 444543 2366777777774 3333332 2345555555544
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=7.5e-29 Score=278.48 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=39.2
Q ss_pred ccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCccc-ccChhhhccCCccEEecCCCcchhccchhhhccCCCcEE
Q 002129 86 LKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIR-TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHL 164 (962)
Q Consensus 86 ~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 164 (962)
...++|++|++++|.++.+|++|+++++|++|++++|.+. .+|.+++++++|+++++++|.. .++++|
T Consensus 8 ~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred cccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 3567888888888888888888888888888888888877 7788888888876666665531 456777
Q ss_pred eccCCcccccccc
Q 002129 165 KNSNTKSLEEMPV 177 (962)
Q Consensus 165 ~l~~n~~~~~lp~ 177 (962)
++++|. +..+|.
T Consensus 77 ~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 77 ELNNLG-LSSLPE 88 (454)
T ss_dssp ECTTSC-CSCCCS
T ss_pred EecCCc-cccCCC
Confidence 777776 555554
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.6e-27 Score=267.88 Aligned_cols=98 Identities=23% Similarity=0.249 Sum_probs=75.5
Q ss_pred ccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCC
Q 002129 82 LPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKL 161 (962)
Q Consensus 82 ~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 161 (962)
+..+..+++|++|++++|.++.+| .++.+++|++|+|++|.++.+| ++.+++|++|++++| .+..+| ++.+++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcC
Confidence 344558889999999999888887 6888899999999999988886 888889999999885 455554 8888889
Q ss_pred cEEeccCCccccccccccccccccccc
Q 002129 162 HHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (962)
Q Consensus 162 ~~L~l~~n~~~~~lp~~~~~L~~L~~L 188 (962)
++|++++|. +..+| ++.+++|++|
T Consensus 109 ~~L~L~~N~-l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 109 TYLNCDTNK-LTKLD--VSQNPLLTYL 132 (457)
T ss_dssp CEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred CEEECCCCc-CCeec--CCCCCcCCEE
Confidence 999988887 54443 4444444444
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.2e-26 Score=261.77 Aligned_cols=109 Identities=17% Similarity=-0.002 Sum_probs=57.5
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAI 769 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l 769 (962)
++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|......|..+..+++|++|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 45555555555555555555555555555555555554444555555556666666655333333444444555555555
Q ss_pred ccccccccCccccCCCcccceeecCCCCC
Q 002129 770 YNCKRLEALPKGLHNLKSLQELRIGKGVA 798 (962)
Q Consensus 770 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~~ 798 (962)
++|...+..+..+..+++|++|++++|+.
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccccCCHhHhccCCcccEEEccCCCc
Confidence 55553322222345566666666666643
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.4e-25 Score=252.89 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=48.3
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
++|+.|++++|......| +..+++|++|++++| .++.++.+..+++|+.|++++|...+..| . ..+++|+.|+
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~ 381 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLTP--L--ANLTRITQLG 381 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCGG--G--TTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccch--h--hcCCCCCEEe
Confidence 555555555555433333 456677777777775 44445566667777777777776433333 2 6677788888
Q ss_pred ecCCC
Q 002129 605 ISGCD 609 (962)
Q Consensus 605 l~~c~ 609 (962)
+++|+
T Consensus 382 l~~n~ 386 (466)
T 1o6v_A 382 LNDQA 386 (466)
T ss_dssp CCCEE
T ss_pred ccCCc
Confidence 77753
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.7e-25 Score=251.57 Aligned_cols=366 Identities=15% Similarity=0.129 Sum_probs=232.3
Q ss_pred cccccCCCCCCCccEEEEcCccccc---ccCCCCCcceEEEEccCCCceeeccccCCCCCCcceeccCCccccccCCCCC
Q 002129 389 KLKGTFPEHLPALEMLVIEGCEELL---VSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCRDTSNQVFLAGPLKP 465 (962)
Q Consensus 389 ~l~~~~p~~l~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (962)
.++ .+|...++|++|++++|.... ..+..+++|++|++++|..... +....+.
T Consensus 21 ~l~-~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------------i~~~~~~ 76 (455)
T 3v47_A 21 GLH-QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV-----------------------IRNNTFR 76 (455)
T ss_dssp CCS-SCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE-----------------------ECTTTTT
T ss_pred Ccc-cCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce-----------------------ECccccc
Confidence 444 555544566666666665332 2566788888888888764321 1223345
Q ss_pred CCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccc-cchhhhHHHHHHHHhhcceeecccccCccccCcc
Q 002129 466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQS-LVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQS 544 (962)
Q Consensus 466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~ 544 (962)
.+++|++|++++|.++.+. +..+..+++|++|++++| .++. ++... .+..+ ++|++|++++|......|..
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~~~l-~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLE---TGAFNGLANLEVLTLTQC-NLDGAVLSGN---FFKPL-TSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp TCTTCCEEECTTCTTCEEC---TTTTTTCTTCCEEECTTS-CCBTHHHHSS---TTTTC-TTCCEEECCSSBCCSCCCCG
T ss_pred ccccCCEEeCCCCccCccC---hhhccCcccCCEEeCCCC-CCCccccCcc---cccCc-ccCCEEECCCCccCccCccc
Confidence 6889999999998887652 445677888888888885 3433 22111 12222 77888888887766655654
Q ss_pred -CCCCCCccEEEecCCCCccccCC-CCC--CCCCcEEEEcCCCCCCCChhhhh-------cCCCCCccEEEecCCCCCCc
Q 002129 545 -SLSLSSLREIEIYGCRSLVSFPE-VAL--PSKLKKIEISSCDALKSLPEAWM-------CDTNSSLEILEISGCDSLTY 613 (962)
Q Consensus 545 -~~~l~~L~~L~l~~~~~l~~~~~-~~~--~~~L~~L~l~~~~~l~~~~~~~~-------~~~l~~L~~L~l~~c~~l~~ 613 (962)
+..+++|++|++++|......+. +.. ..+|+.|++++|. +..++..++ ...+++|++|++++|.....
T Consensus 149 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCccccc
Confidence 67778888888887654433332 222 2567778887776 444332211 02446777777777543332
Q ss_pred ccCC----CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCC-C
Q 002129 614 IAGV----QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGN-L 688 (962)
Q Consensus 614 ~~~~----~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~-l 688 (962)
.+.. ...++|+.|+++++....... ....++.. ....+.. -
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------------------------~~~~~~~~-~~~~~~~~~ 273 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSF---------------------------------GHTNFKDP-DNFTFKGLE 273 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCCT---------------------------------TCCSSCCC-CTTTTGGGT
T ss_pred chhhhhccccccceeeEeecccccccccc---------------------------------chhhhccC-ccccccccc
Confidence 2211 122466666666654322111 11000000 0000000 0
Q ss_pred ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129 689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA 768 (962)
Q Consensus 689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~ 768 (962)
.++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++++|++|++++|......|..+..+++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 16899999999998888888899999999999999988887788889999999999999854333345556678999999
Q ss_pred cccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhh
Q 002129 769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEI 822 (962)
Q Consensus 769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~ 822 (962)
+++|...+..|..+..+++|++|++++| .++.++.. ..+++|++|++++|++.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcc
Confidence 9999876666778888999999999988 55555542 34566666666666543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.2e-25 Score=250.46 Aligned_cols=331 Identities=19% Similarity=0.159 Sum_probs=216.8
Q ss_pred ccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhh
Q 002129 53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVS 132 (962)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~ 132 (962)
..+.++++|++|.+.++. ...+| .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~-------l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSS-------ITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp EEHHHHTTCCEEECCSSC-------CCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred cChhHcCCCCEEEccCCC-------cccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC
Confidence 345677888888876653 23333 5568889999999999888875 888899999999999888875 88
Q ss_pred ccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeecCCCCCCcccccccccccc
Q 002129 133 KLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRG 212 (962)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 212 (962)
++++|++|++++| .+..+| ++.+++|++|++++|. +..++ ++++++|++|++..+.....
T Consensus 104 ~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~-------------- 163 (457)
T 3bz5_A 104 PLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITK-------------- 163 (457)
T ss_dssp TCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCC--------------
T ss_pred CCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCcccc--------------
Confidence 8899999999985 455565 8888999999999888 66554 77788888775533211000
Q ss_pred eeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCC
Q 002129 213 TLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDS 292 (962)
Q Consensus 213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 292 (962)
. .+..+++|+.|++++|..... + +..+++|+.|+++++....++ +.
T Consensus 164 ----------------~--~~~~l~~L~~L~ls~n~l~~l-----------~-l~~l~~L~~L~l~~N~l~~~~--l~-- 209 (457)
T 3bz5_A 164 ----------------L--DVTPQTQLTTLDCSFNKITEL-----------D-VSQNKLLNRLNCDTNNITKLD--LN-- 209 (457)
T ss_dssp ----------------C--CCTTCTTCCEEECCSSCCCCC-----------C-CTTCTTCCEEECCSSCCSCCC--CT--
T ss_pred ----------------c--ccccCCcCCEEECCCCcccee-----------c-cccCCCCCEEECcCCcCCeec--cc--
Confidence 0 145567777777776653321 1 556678888888888777663 32
Q ss_pred CCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcc
Q 002129 293 SFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQG 372 (962)
Q Consensus 293 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 372 (962)
.+++|+.|++++|.+.+ +| ++.+++|++|++++|... .+. ...+++|+.|.+..
T Consensus 210 ~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~-~~~--------~~~l~~L~~L~l~~--------------- 263 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLT-ELD--------VSTLSKLTTLHCIQ--------------- 263 (457)
T ss_dssp TCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCS-CCC--------CTTCTTCCEEECTT---------------
T ss_pred cCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCC-CcC--------HHHCCCCCEEeccC---------------
Confidence 57888888888888766 45 778888888888887532 221 23367777666532
Q ss_pred cccCCCccEEEeccCCcccccCC-CCCCCccEEEEcCcccccccCCCCCcceEEEEccCCCceeeccccCCCCCCcceec
Q 002129 373 VERFPKLRELRILRCSKLKGTFP-EHLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKKVVWESATGHLGSQNSVVCR 451 (962)
Q Consensus 373 ~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 451 (962)
.+|+.|++++|..+. .+| ..+++|+.|++++|..+.......++|+.++++
T Consensus 264 ----n~L~~L~l~~n~~~~-~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~----------------------- 315 (457)
T 3bz5_A 264 ----TDLLEIDLTHNTQLI-YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS----------------------- 315 (457)
T ss_dssp ----CCCSCCCCTTCTTCC-EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT-----------------------
T ss_pred ----CCCCEEECCCCccCC-cccccccccCCEEECCCCcccceeccCCCcceEechh-----------------------
Confidence 345666666664332 444 344566666666655443322233344433332
Q ss_pred cCCccccccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceee
Q 002129 452 DTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLR 531 (962)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ 531 (962)
.+++|++|++++|+++++. +..+++|+.|++++ +.+..+ +.|..|+
T Consensus 316 --------------~~~~L~~L~L~~N~l~~l~------l~~l~~L~~L~l~~-N~l~~l-------------~~L~~L~ 361 (457)
T 3bz5_A 316 --------------QNPKLVYLYLNNTELTELD------VSHNTKLKSLSCVN-AHIQDF-------------SSVGKIP 361 (457)
T ss_dssp --------------TCTTCCEEECTTCCCSCCC------CTTCTTCSEEECCS-SCCCBC-------------TTGGGSS
T ss_pred --------------hcccCCEEECCCCcccccc------cccCCcCcEEECCC-CCCCCc-------------ccccccc
Confidence 2346777888887777641 45667777777776 555543 4455566
Q ss_pred cccccC
Q 002129 532 LSYCEG 537 (962)
Q Consensus 532 ls~~~~ 537 (962)
+++|..
T Consensus 362 l~~n~l 367 (457)
T 3bz5_A 362 ALNNNF 367 (457)
T ss_dssp GGGTSE
T ss_pred ccCCcE
Confidence 655543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.2e-24 Score=247.09 Aligned_cols=349 Identities=17% Similarity=0.204 Sum_probs=220.1
Q ss_pred CCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccC
Q 002129 466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSS 545 (962)
Q Consensus 466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~ 545 (962)
.++++++|++.++.+..+.. +..+++|++|++++| .++.++. +..+ ++|++|++++|......+ +
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-----~~~l~~L~~L~Ls~n-~l~~~~~------~~~l-~~L~~L~l~~n~l~~~~~--~ 108 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNN-QLTDITP------LKNL-TKLVDILMNNNQIADITP--L 108 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-----GGGCTTCCEEECCSS-CCCCCGG------GTTC-TTCCEEECCSSCCCCCGG--G
T ss_pred HhccccEEecCCCCCccCcc-----hhhhcCCCEEECCCC-ccCCchh------hhcc-ccCCEEECCCCccccChh--h
Confidence 35678888888887765531 466788888888874 4555543 1222 777888887776544333 6
Q ss_pred CCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCCce
Q 002129 546 LSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKR 625 (962)
Q Consensus 546 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 625 (962)
..+++|++|++++| .++.++.+..+++|++|++++|. +..++. + ..+++|++|++++ .+..++....+++|+.
T Consensus 109 ~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 109 ANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-ISDISA-L--SGLTSLQQLSFGN--QVTDLKPLANLTTLER 181 (466)
T ss_dssp TTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCGG-G--TTCTTCSEEEEEE--SCCCCGGGTTCTTCCE
T ss_pred cCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCc-cCCChh-h--ccCCcccEeecCC--cccCchhhccCCCCCE
Confidence 77778888888775 44555556677778888887776 445543 2 6677777777753 3333333444566666
Q ss_pred EEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchh
Q 002129 626 LKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLES 705 (962)
Q Consensus 626 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~ 705 (962)
|++++|. ++.++ .+..+ ++|++|++++|...+.
T Consensus 182 L~l~~n~-l~~~~----------------------------------------~l~~l------~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 182 LDISSNK-VSDIS----------------------------------------VLAKL------TNLESLIATNNQISDI 214 (466)
T ss_dssp EECCSSC-CCCCG----------------------------------------GGGGC------TTCSEEECCSSCCCCC
T ss_pred EECcCCc-CCCCh----------------------------------------hhccC------CCCCEEEecCCccccc
Confidence 6666653 22221 01111 5777777777766655
Q ss_pred hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCC
Q 002129 706 IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNL 785 (962)
Q Consensus 706 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l 785 (962)
.+ ++.+++|++|++++|...+ + ..+..+++|++|++++|. +..++. +..+++|+.|++++|... .++. +..+
T Consensus 215 ~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l 286 (466)
T 1o6v_A 215 TP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQIS-NISP-LAGL 286 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCC-CCGG-GTTC
T ss_pred cc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCccC-cccc-ccCC
Confidence 44 6667777777777776543 2 346667777777777773 333332 445667777777777643 3333 6677
Q ss_pred cccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCc
Q 002129 786 KSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGT 865 (962)
Q Consensus 786 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 865 (962)
++|++|++++| .+..++....+++|++|++++|......+ +..+++|++|++++|. ...++
T Consensus 287 ~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~--l~~~~---------- 347 (466)
T 1o6v_A 287 TALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNK--VSDVS---------- 347 (466)
T ss_dssp TTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSC--CCCCG----------
T ss_pred CccCeEEcCCC-cccCchhhcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCc--cCCch----------
Confidence 77777777777 44555545566777777777776654322 4677888888888863 22221
Q ss_pred cccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCC
Q 002129 866 VLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPE 913 (962)
Q Consensus 866 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 913 (962)
.+..+++|++|++++| .+..+++ +..+++|++|++.+|+ +..+|.
T Consensus 348 ~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 348 SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCEE-EECCCB
T ss_pred hhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCCc-ccCCch
Confidence 2356778888888875 4555544 6778888888888853 444443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.9e-23 Score=228.05 Aligned_cols=99 Identities=13% Similarity=0.188 Sum_probs=44.4
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
++|++|++++|.. +.++. +..+++|++|++++| .++.++.+..+++|++|++++|. +..++. + ..+++|++|+
T Consensus 66 ~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~-i~~~~~-~--~~l~~L~~L~ 138 (347)
T 4fmz_A 66 TNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDN-ISDISP-L--ANLTKMYSLN 138 (347)
T ss_dssp TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSC-CCCCGG-G--TTCTTCCEEE
T ss_pred CCccEEEccCCcc-ccchh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCc-ccCchh-h--ccCCceeEEE
Confidence 4444444444432 22222 445555555555554 33334444445555555555554 333333 1 4455555555
Q ss_pred ecCCCCCCcccCCCCCCCCceEEecc
Q 002129 605 ISGCDSLTYIAGVQLPPSLKRLKICH 630 (962)
Q Consensus 605 l~~c~~l~~~~~~~~~~~L~~L~l~~ 630 (962)
+++|.....++....+++|+.|++++
T Consensus 139 l~~n~~~~~~~~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 139 LGANHNLSDLSPLSNMTGLNYLTVTE 164 (347)
T ss_dssp CTTCTTCCCCGGGTTCTTCCEEECCS
T ss_pred CCCCCCcccccchhhCCCCcEEEecC
Confidence 55554444433333333444444433
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2e-23 Score=227.91 Aligned_cols=301 Identities=17% Similarity=0.171 Sum_probs=158.7
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
++|++|++++|.. ..++ .+..+++|++|++++| .++.++.+..+++|++|++++|. ++.++. + ..+++|++|+
T Consensus 44 ~~L~~L~l~~~~i-~~~~-~~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~--~~l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEKV-ASIQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISA-L--QNLTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-G--TTCTTCSEEE
T ss_pred ccccEEEEeCCcc-ccch-hhhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchH-H--cCCCcCCEEE
Confidence 6777777777654 3344 3666777777777775 44455556666777777777775 445542 2 5667777777
Q ss_pred ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129 605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE 684 (962)
Q Consensus 605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 684 (962)
+++|. ++.++....+++|+.|++++|..+..++. +.
T Consensus 117 l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------------------------------~~--- 152 (347)
T 4fmz_A 117 LNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSP----------------------------------------LS--- 152 (347)
T ss_dssp CTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGG----------------------------------------GT---
T ss_pred CcCCc-ccCchhhccCCceeEEECCCCCCcccccc----------------------------------------hh---
Confidence 77643 33333333344455555444433322220 00
Q ss_pred cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccc
Q 002129 685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKL 764 (962)
Q Consensus 685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L 764 (962)
.+ ++|++|++++|...+..+ +..+++|++|++++|.... ++. +..+++|+.|++++| .+..++. ...+++|
T Consensus 153 --~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L 223 (347)
T 4fmz_A 153 --NM-TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVN-QITDITP-VANMTRL 223 (347)
T ss_dssp --TC-TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSS-CCCCCGG-GGGCTTC
T ss_pred --hC-CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccC-CCCCCch-hhcCCcC
Confidence 11 456666666665444333 5566666666666655433 222 555666666666665 2333222 3334555
Q ss_pred cccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeec
Q 002129 765 AMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTI 844 (962)
Q Consensus 765 ~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l 844 (962)
++|++++|.. ..++. +..+++|++|++++| .+..++. +..+++|++|++
T Consensus 224 ~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n-~l~~~~~----------------------------~~~l~~L~~L~l 272 (347)
T 4fmz_A 224 NSLKIGNNKI-TDLSP-LANLSQLTWLEIGTN-QISDINA----------------------------VKDLTKLKMLNV 272 (347)
T ss_dssp CEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGG----------------------------GTTCTTCCEEEC
T ss_pred CEEEccCCcc-CCCcc-hhcCCCCCEEECCCC-ccCCChh----------------------------HhcCCCcCEEEc
Confidence 5555555552 23332 555555555555555 3333332 345555666666
Q ss_pred ccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCCCCccccceee
Q 002129 845 MNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQLS 924 (962)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~ 924 (962)
++|. ...+ .++..+++|++|++++|+--...+..+.++++|++|++++|+ ++.+++....++|++|+
T Consensus 273 ~~n~--l~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 339 (347)
T 4fmz_A 273 GSNQ--ISDI----------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSAD 339 (347)
T ss_dssp CSSC--CCCC----------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEES
T ss_pred cCCc--cCCC----------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceee
Confidence 5542 1111 112355666666666643222334455666777777777754 55554422336777777
Q ss_pred ccCCh
Q 002129 925 INRCP 929 (962)
Q Consensus 925 i~~c~ 929 (962)
+++|+
T Consensus 340 l~~N~ 344 (347)
T 4fmz_A 340 FANQV 344 (347)
T ss_dssp SSCC-
T ss_pred hhhhc
Confidence 77665
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=4.5e-24 Score=236.81 Aligned_cols=302 Identities=18% Similarity=0.133 Sum_probs=223.1
Q ss_pred cCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhh
Q 002129 56 YDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVS 132 (962)
Q Consensus 56 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~ 132 (962)
..++++|.|.+.++. ...+|+.++ .+++|++|++++|.++.+| ..|+.+++|++|+|++|.++.+|. .++
T Consensus 42 ~~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 357889999887654 567888877 8999999999999999875 589999999999999999998864 589
Q ss_pred ccCCccEEecCCCcchhccchh-hhccCCCcEEeccCCccccccc-ccccccccccccceeeecCCCCCCcccccccccc
Q 002129 133 KLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSNTKSLEEMP-VGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQL 210 (962)
Q Consensus 133 ~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n~~~~~lp-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L 210 (962)
++++|++|++++| .+..+|.. ++++++|++|++++|. +..++ ..++.+++|++|++..+.... .
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~----------- 180 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-V----------- 180 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-C-----------
T ss_pred CCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc-c-----------
Confidence 9999999999995 57788876 5899999999999998 55555 458999999999764432111 0
Q ss_pred cceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCcccc
Q 002129 211 RGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLG 290 (962)
Q Consensus 211 ~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 290 (962)
.+..+++|+.|++++|.. ..+...+.|++|+++++....+|...
T Consensus 181 ---------------------~~~~l~~L~~L~l~~n~l--------------~~~~~~~~L~~L~l~~n~l~~~~~~~- 224 (390)
T 3o6n_A 181 ---------------------DLSLIPSLFHANVSYNLL--------------STLAIPIAVEELDASHNSINVVRGPV- 224 (390)
T ss_dssp ---------------------CGGGCTTCSEEECCSSCC--------------SEEECCSSCSEEECCSSCCCEEECCC-
T ss_pred ---------------------ccccccccceeecccccc--------------cccCCCCcceEEECCCCeeeeccccc-
Confidence 133455667777765532 22334567888888888777665543
Q ss_pred CCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCC
Q 002129 291 DSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSS 370 (962)
Q Consensus 291 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 370 (962)
+++|+.|++++|.+.+ .+.++.+++|++|++++|........ .+.. +++|+.|++.++. +..+..
T Consensus 225 ---~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~-----l~~L~~L~L~~n~-l~~~~~---- 289 (390)
T 3o6n_A 225 ---NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYH-PFVK-----MQRLERLYISNNR-LVALNL---- 289 (390)
T ss_dssp ---CSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESG-GGTT-----CSSCCEEECCSSC-CCEEEC----
T ss_pred ---cccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChh-Hccc-----cccCCEEECCCCc-CcccCc----
Confidence 5688888888887654 36677888888888888764333232 2222 7888888888753 333211
Q ss_pred cccccCCCccEEEeccCCcccccCCC---CCCCccEEEEcCcccccccCCCCCcceEEEEccCCC
Q 002129 371 QGVERFPKLRELRILRCSKLKGTFPE---HLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKK 432 (962)
Q Consensus 371 ~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~ 432 (962)
....+++|++|++++| .++ .+|. .+++|++|++++|......+..+++|+.|++++|+.
T Consensus 290 -~~~~l~~L~~L~L~~n-~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 290 -YGQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp -SSSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred -ccCCCCCCCEEECCCC-cce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCc
Confidence 1356888999998888 665 5553 468888999988887766778889999999998873
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=5.2e-23 Score=235.09 Aligned_cols=294 Identities=19% Similarity=0.181 Sum_probs=173.7
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL 603 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 603 (962)
++++.|++++|......+..+..+++|++|++++|......+ .+..+++|++|++++|. ++.++...+ ..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCCCCCCEE
Confidence 445555555555444444455556666666666543222212 24445566666666655 444444333 455666666
Q ss_pred EecCCCCCCcccCC--CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCcccccc
Q 002129 604 EISGCDSLTYIAGV--QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLE 681 (962)
Q Consensus 604 ~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 681 (962)
++++|. ++.++.. ..+++|+.|+++++. +..+.. ..+
T Consensus 110 ~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--------------------------------------~~~- 148 (477)
T 2id5_A 110 DISENK-IVILLDYMFQDLYNLKSLEVGDND-LVYISH--------------------------------------RAF- 148 (477)
T ss_dssp ECTTSC-CCEECTTTTTTCTTCCEEEECCTT-CCEECT--------------------------------------TSS-
T ss_pred ECCCCc-cccCChhHccccccCCEEECCCCc-cceeCh--------------------------------------hhc-
Confidence 666643 2222211 233455555555442 111110 000
Q ss_pred ccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCc
Q 002129 682 SLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPC 761 (962)
Q Consensus 682 ~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 761 (962)
..+ ++|++|++++|...+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+.+..+|...+..
T Consensus 149 ----~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 149 ----SGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp ----TTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred ----cCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence 111 577777777777666666677778888888888777766666677777888888888877777777766666
Q ss_pred ccccccccccccccccCc-cccCCCcccceeecCCCCCCCCCCC--CCCCCccceEeecCchhhhHHHHhccccccccCc
Q 002129 762 AKLAMLAIYNCKRLEALP-KGLHNLKSLQELRIGKGVALPSLEE--DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSS 838 (962)
Q Consensus 762 ~~L~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 838 (962)
.+|+.|++++|. +..+| ..+.++++|++|++++|. +..++. ...+++|++|++++|.+....+ ..+..+++
T Consensus 224 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~ 297 (477)
T 2id5_A 224 LNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNY 297 (477)
T ss_dssp CCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECT----TTBTTCTT
T ss_pred ccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECH----HHhcCccc
Confidence 678888888776 34454 356777888888888774 444433 2445777777777777655433 45677777
Q ss_pred cceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCC
Q 002129 839 LRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFP 882 (962)
Q Consensus 839 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 882 (962)
|+.|++++| .+..++.. ++..+++|++|++++++
T Consensus 298 L~~L~L~~N--~l~~~~~~--------~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 298 LRVLNVSGN--QLTTLEES--------VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCSS--CCSCCCGG--------GBSCGGGCCEEECCSSC
T ss_pred CCEEECCCC--cCceeCHh--------HcCCCcccCEEEccCCC
Confidence 888888776 33333332 23456777777777754
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=6.4e-23 Score=227.49 Aligned_cols=313 Identities=16% Similarity=0.174 Sum_probs=246.8
Q ss_pred CCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCcc
Q 002129 465 PQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQS 544 (962)
Q Consensus 465 ~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~ 544 (962)
..+++++.++++++.+..+ +...+..+++|++|++++ +.++.++... +..+ ++|++|++++|......|..
T Consensus 42 ~~l~~l~~l~l~~~~l~~l---~~~~~~~l~~L~~L~L~~-n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~ 112 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLND-LQIEEIDTYA----FAYA-HTIQKLYMGFNAIRYLPPHV 112 (390)
T ss_dssp GGGCCCSEEEEESCEESEE---CTHHHHHCCCCSEEECTT-SCCCEECTTT----TTTC-TTCCEEECCSSCCCCCCTTT
T ss_pred cccCCceEEEecCCchhhC---ChhHhcccccCcEEECCC-CcccccChhh----ccCC-CCcCEEECCCCCCCcCCHHH
Confidence 3568999999999887765 445578899999999999 4677776543 2333 89999999999877777778
Q ss_pred CCCCCCccEEEecCCCCccccCC--CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCC
Q 002129 545 SLSLSSLREIEIYGCRSLVSFPE--VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPS 622 (962)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 622 (962)
+..+++|++|++++| .++.+|. +..+++|++|++++|. +..++...+ ..+++|++|++++| .++.++. ..+++
T Consensus 113 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~l~~ 187 (390)
T 3o6n_A 113 FQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSN-RLTHVDL-SLIPS 187 (390)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSS-CCSBCCG-GGCTT
T ss_pred hcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCC-cCCcccc-ccccc
Confidence 899999999999997 4556765 4678999999999998 455544433 78899999999995 4555432 45579
Q ss_pred CceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCC
Q 002129 623 LKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSK 702 (962)
Q Consensus 623 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~ 702 (962)
|+.++++++. ++.++. .+.|+.|+++++.- .. ++. ..+++|+.|++++|..
T Consensus 188 L~~L~l~~n~-l~~~~~-------------~~~L~~L~l~~n~l-~~-~~~-------------~~~~~L~~L~l~~n~l 238 (390)
T 3o6n_A 188 LFHANVSYNL-LSTLAI-------------PIAVEELDASHNSI-NV-VRG-------------PVNVELTILKLQHNNL 238 (390)
T ss_dssp CSEEECCSSC-CSEEEC-------------CSSCSEEECCSSCC-CE-EEC-------------CCCSSCCEEECCSSCC
T ss_pred cceeeccccc-ccccCC-------------CCcceEEECCCCee-ee-ccc-------------cccccccEEECCCCCC
Confidence 9999998873 433331 24688898887642 22 111 1127999999999988
Q ss_pred chhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCcccc
Q 002129 703 LESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGL 782 (962)
Q Consensus 703 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 782 (962)
.+. ..+..+++|++|++++|.+.+..|..+..+++|++|++++| .++.+|.....+++|+.|++++|. +..+|..+
T Consensus 239 ~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 314 (390)
T 3o6n_A 239 TDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQ 314 (390)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGH
T ss_pred ccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccc
Confidence 764 57899999999999999988888899999999999999998 677788777778999999999997 56788888
Q ss_pred CCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHH
Q 002129 783 HNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSM 826 (962)
Q Consensus 783 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 826 (962)
..+++|++|++++|+ +..++ ...+++|++|++++|+......
T Consensus 315 ~~l~~L~~L~L~~N~-i~~~~-~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 315 PQFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp HHHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred cccCcCCEEECCCCc-cceeC-chhhccCCEEEcCCCCccchhH
Confidence 899999999999994 56665 4567899999999999876544
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.4e-22 Score=229.59 Aligned_cols=277 Identities=21% Similarity=0.192 Sum_probs=185.9
Q ss_pred CCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCcc
Q 002129 465 PQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQS 544 (962)
Q Consensus 465 ~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~ 544 (962)
..+++|++|++++|.++.+. +..+..+++|++|++++ +.++.++... +..+ ++|++|++++|......+..
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~-n~l~~~~~~~----~~~l-~~L~~L~Ls~n~i~~~~~~~ 123 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVE---PGAFNNLFNLRTLGLRS-NRLKLIPLGV----FTGL-SNLTKLDISENKIVILLDYM 123 (477)
T ss_dssp TTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCS-SCCCSCCTTS----STTC-TTCCEEECTTSCCCEECTTT
T ss_pred cCCCCCCEEECCCCccCEeC---hhhhhCCccCCEEECCC-CcCCccCccc----ccCC-CCCCEEECCCCccccCChhH
Confidence 45566666666666655442 33456667777777766 4555555432 1222 77888888887776666777
Q ss_pred CCCCCCccEEEecCCCCccccC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCC--CCCC
Q 002129 545 SLSLSSLREIEIYGCRSLVSFP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGV--QLPP 621 (962)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~ 621 (962)
+..+++|++|++++|......+ .+..+++|++|++++|. ++.++...+ ..+++|+.|++++|. +..++.. ..++
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~-i~~~~~~~~~~l~ 200 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEAL-SHLHGLIVLRLRHLN-INAIRDYSFKRLY 200 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHH-TTCTTCCEEEEESCC-CCEECTTCSCSCT
T ss_pred ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHh-cccCCCcEEeCCCCc-CcEeChhhcccCc
Confidence 8888888888888865433222 45667888888888887 566665544 778888888888853 3444332 3345
Q ss_pred CCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCC
Q 002129 622 SLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCS 701 (962)
Q Consensus 622 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~ 701 (962)
+|+.|++++|..+..++.. .+ .. .+|++|++++|.
T Consensus 201 ~L~~L~l~~~~~~~~~~~~----------------------------------~~----------~~-~~L~~L~l~~n~ 235 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPN----------------------------------CL----------YG-LNLTSLSITHCN 235 (477)
T ss_dssp TCCEEEEECCTTCCEECTT----------------------------------TT----------TT-CCCSEEEEESSC
T ss_pred ccceeeCCCCccccccCcc----------------------------------cc----------cC-ccccEEECcCCc
Confidence 6666666665544443310 00 00 478888888887
Q ss_pred CchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccc
Q 002129 702 KLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKG 781 (962)
Q Consensus 702 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 781 (962)
+.+..+..+..+++|+.|++++|.+.+..+..+.++++|++|++++|......|..+..+++|+.|++++|......+..
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 76655567888888888888888877666667788888888888888544445556666788888888888754444446
Q ss_pred cCCCcccceeecCCCCC
Q 002129 782 LHNLKSLQELRIGKGVA 798 (962)
Q Consensus 782 ~~~l~~L~~L~l~~~~~ 798 (962)
+..+++|++|++++|+.
T Consensus 316 ~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 316 FHSVGNLETLILDSNPL 332 (477)
T ss_dssp BSCGGGCCEEECCSSCE
T ss_pred cCCCcccCEEEccCCCc
Confidence 67888888888888753
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.1e-23 Score=241.04 Aligned_cols=301 Identities=18% Similarity=0.138 Sum_probs=219.7
Q ss_pred CCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccChh-hhc
Q 002129 57 DIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPES-VSK 133 (962)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~ 133 (962)
.+++++.+.+.++. ...+|+.++ .+++|++|+|++|.++.+| ..|+.+++|++|+|++|.++.+|.. |++
T Consensus 49 ~l~~l~~l~l~~~~-------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCC-------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 56788999886653 567888888 8999999999999999875 5899999999999999999988754 799
Q ss_pred cCCccEEecCCCcchhccchh-hhccCCCcEEeccCCccccccc-ccccccccccccceeeecCCCCCCccccccccccc
Q 002129 134 LYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSNTKSLEEMP-VGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLR 211 (962)
Q Consensus 134 L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n~~~~~lp-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 211 (962)
+++|++|++++| .+..+|.. |+.+++|++|++++|. +..++ ..++.+++|++|++..+.... .
T Consensus 122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-~------------ 186 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-V------------ 186 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB-C------------
T ss_pred CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC-c------------
Confidence 999999999995 56677766 5999999999999999 55554 469999999999764432111 0
Q ss_pred ceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccC
Q 002129 212 GTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGD 291 (962)
Q Consensus 212 ~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 291 (962)
.+..+++|+.|++++|.. ..+..++.|+.|+++++....+|..+
T Consensus 187 --------------------~~~~l~~L~~L~l~~n~l--------------~~l~~~~~L~~L~ls~n~l~~~~~~~-- 230 (597)
T 3oja_B 187 --------------------DLSLIPSLFHANVSYNLL--------------STLAIPIAVEELDASHNSINVVRGPV-- 230 (597)
T ss_dssp --------------------CGGGCTTCSEEECCSSCC--------------SEEECCTTCSEEECCSSCCCEEECSC--
T ss_pred --------------------ChhhhhhhhhhhcccCcc--------------ccccCCchhheeeccCCccccccccc--
Confidence 123345666666665532 22334567788888887776665543
Q ss_pred CCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCc
Q 002129 292 SSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQ 371 (962)
Q Consensus 292 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 371 (962)
.++|+.|++++|.+.+ ++.++.+++|++|++++|.........+ + .+++|+.|++.++ .+..+..
T Consensus 231 --~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~-----~l~~L~~L~Ls~N-~l~~l~~----- 295 (597)
T 3oja_B 231 --NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPF-V-----KMQRLERLYISNN-RLVALNL----- 295 (597)
T ss_dssp --CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGG-T-----TCSSCCEEECTTS-CCCEEEC-----
T ss_pred --CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHh-c-----CccCCCEEECCCC-CCCCCCc-----
Confidence 4578888888887654 3567778888888888776443333222 2 2778888888775 2333211
Q ss_pred ccccCCCccEEEeccCCcccccCCC---CCCCccEEEEcCcccccccCCCCCcceEEEEccCCC
Q 002129 372 GVERFPKLRELRILRCSKLKGTFPE---HLPALEMLVIEGCEELLVSVSSLPALCKFIISGCKK 432 (962)
Q Consensus 372 ~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~ 432 (962)
....+++|+.|++++| .++ .+|. .+++|+.|++++|......+..+++|+.|++++|+.
T Consensus 296 ~~~~l~~L~~L~Ls~N-~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SSSCCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred ccccCCCCcEEECCCC-CCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 1356788888888888 565 5653 467888888888887666777888899999988873
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.3e-22 Score=233.19 Aligned_cols=312 Identities=16% Similarity=0.184 Sum_probs=245.6
Q ss_pred CCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccC
Q 002129 466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSS 545 (962)
Q Consensus 466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~ 545 (962)
.+++++.+++++|.+..+ +...+..+++|++|++++ +.+..++... +..+ ++|+.|++++|......|..+
T Consensus 49 ~l~~l~~l~l~~~~l~~l---p~~~~~~l~~L~~L~L~~-n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL---PAALLDSFRQVELLNLND-LQIEEIDTYA----FAYA-HTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESSCEESEE---CTHHHHHCCCCSEEECTT-SCCCEECTTT----TTTC-TTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCceEEEeeCCCCCCc---CHHHHccCCCCcEEECCC-CCCCCCChHH----hcCC-CCCCEEECCCCcCCCCCHHHH
Confidence 467899999999887765 455678899999999999 5677776543 2333 899999999998777677778
Q ss_pred CCCCCccEEEecCCCCccccCC--CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCC
Q 002129 546 LSLSSLREIEIYGCRSLVSFPE--VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSL 623 (962)
Q Consensus 546 ~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L 623 (962)
..+++|++|++++|. ++.+|. +..+++|++|++++|. +..++...+ ..+++|++|++++| .++.++. ..+++|
T Consensus 120 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~l~~L 194 (597)
T 3oja_B 120 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSN-RLTHVDL-SLIPSL 194 (597)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTS-CCSBCCG-GGCTTC
T ss_pred cCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCC-CCCCcCh-hhhhhh
Confidence 999999999999974 556664 4678999999999998 445544433 78899999999995 4555543 456789
Q ss_pred ceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCc
Q 002129 624 KRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKL 703 (962)
Q Consensus 624 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~ 703 (962)
+.|+++++. +..++. .+.|+.|+++++.- .. ++ +..+++|+.|++++|.+.
T Consensus 195 ~~L~l~~n~-l~~l~~-------------~~~L~~L~ls~n~l-~~-~~-------------~~~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 195 FHANVSYNL-LSTLAI-------------PIAVEELDASHNSI-NV-VR-------------GPVNVELTILKLQHNNLT 245 (597)
T ss_dssp SEEECCSSC-CSEEEC-------------CTTCSEEECCSSCC-CE-EE-------------CSCCSCCCEEECCSSCCC
T ss_pred hhhhcccCc-cccccC-------------CchhheeeccCCcc-cc-cc-------------cccCCCCCEEECCCCCCC
Confidence 999998873 333321 24688888887642 22 11 112378999999999987
Q ss_pred hhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccC
Q 002129 704 ESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLH 783 (962)
Q Consensus 704 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 783 (962)
+. ..+..+++|+.|++++|.+.+..|..+.++++|++|+|++| .+..+|.....+++|+.|++++|. +..+|..+.
T Consensus 246 ~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~ 321 (597)
T 3oja_B 246 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQP 321 (597)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHH
T ss_pred CC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccc
Confidence 63 67899999999999999999888999999999999999998 677788777778999999999998 557888889
Q ss_pred CCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHH
Q 002129 784 NLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSM 826 (962)
Q Consensus 784 ~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 826 (962)
.+++|++|++++|. +..++ ...+++|+.|++++|+......
T Consensus 322 ~l~~L~~L~L~~N~-l~~~~-~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 322 QFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp HHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred cCCCCCEEECCCCC-CCCcC-hhhcCCCCEEEeeCCCCCChhH
Confidence 99999999999995 55554 4567899999999999776544
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=6.8e-22 Score=211.14 Aligned_cols=247 Identities=16% Similarity=0.173 Sum_probs=133.0
Q ss_pred CceeEEEEEecCCCcc-cccccccCCCceeEEeecc-ccCCCCCCCCcccccccccCCcccEEEecCCCCc-ccCccccC
Q 002129 34 RYLRHLSYIRGDYDGV-QRFGDLYDIQHLRTFLPVI-LSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRIL-ELPDSVGD 110 (962)
Q Consensus 34 ~~~r~lsl~~~~~~~~-~~~~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~~~ 110 (962)
.+++++++.++.+... ..+..+.++++|++|.+.+ +. +...+|+.+..+++|++|++++|.++ .+|..|+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN------LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT------EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc------ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 4566666666655431 1234556666666666653 22 12344444556666666666666666 55666666
Q ss_pred CCcCcEEEcCCCccc-ccChhhhccCCccEEecCCCcchhccchhhhccC-CCcEEeccCCccccccccccccccccccc
Q 002129 111 LRYLRYLNLSGTEIR-TLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLV-KLHHLKNSNTKSLEEMPVGIGRLTCLQTL 188 (962)
Q Consensus 111 L~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~l~~n~~~~~lp~~~~~L~~L~~L 188 (962)
+++|++|+|++|.++ .+|..++.+++|++|++++|...+.+|..++.+. +|++|++++|.+.+.+|..++.++ |++|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 666666666666666 5566666666666666666544446666666666 666666666664445565566654 5555
Q ss_pred ceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCC
Q 002129 189 CSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKP 268 (962)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 268 (962)
++..+. .....+..+..+++|+.|++++|.... ....+..
T Consensus 203 ~Ls~N~------------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~----------~~~~~~~ 242 (313)
T 1ogq_A 203 DLSRNM------------------------------LEGDASVLFGSDKNTQKIHLAKNSLAF----------DLGKVGL 242 (313)
T ss_dssp ECCSSE------------------------------EEECCGGGCCTTSCCSEEECCSSEECC----------BGGGCCC
T ss_pred ECcCCc------------------------------ccCcCCHHHhcCCCCCEEECCCCceee----------ecCcccc
Confidence 432211 111122334555666666665554211 1111333
Q ss_pred CCCcceEEEeccCCC-CCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129 269 HTNLEQFCIKGYGGM-KFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS 329 (962)
Q Consensus 269 ~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 329 (962)
+++|++|++++|... .+|.++. .+++|+.|++++|.+.+.+|..+.+++|+.|++++|+
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGG--GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred cCCCCEEECcCCcccCcCChHHh--cCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 445555555555544 4444443 2455555555555544444444445555555554443
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=5.6e-21 Score=205.21 Aligned_cols=186 Identities=22% Similarity=0.313 Sum_probs=132.4
Q ss_pred cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEec
Q 002129 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN 166 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 166 (962)
...++++|+|++|.++.+|..++.+++|++|+|++|.++.+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 45899999999999999999999999999999999999999999999999999999996 56689999999999999999
Q ss_pred cCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEe
Q 002129 167 SNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRW 246 (962)
Q Consensus 167 ~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (962)
++|...+.+|..++...- ...+.++++|+.|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~~---------------------------------------------~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTDA---------------------------------------------SGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhccc---------------------------------------------hhhhccCCCCCEEECcC
Confidence 998878888876544100 00133455666666666
Q ss_pred ecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEE
Q 002129 247 TLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTV 325 (962)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 325 (962)
|..... ...+..+++|++|++++|....+|..+. .+++|++|++++|.+.+.+| .++.+++|++|++
T Consensus 193 n~l~~l----------p~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 193 TGIRSL----------PASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp ECCCCC----------CGGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCcCcc----------hHhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 543211 1223445556666666666555555544 35666666666665555554 3555566666666
Q ss_pred cCCCC
Q 002129 326 RGMSK 330 (962)
Q Consensus 326 ~~~~~ 330 (962)
++|..
T Consensus 261 ~~n~~ 265 (328)
T 4fcg_A 261 KDCSN 265 (328)
T ss_dssp TTCTT
T ss_pred CCCCc
Confidence 55543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=2.9e-20 Score=200.93 Aligned_cols=294 Identities=17% Similarity=0.155 Sum_probs=165.3
Q ss_pred CcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCC
Q 002129 469 KLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSL 548 (962)
Q Consensus 469 ~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l 548 (962)
+++.++++++.++.+.. . -.++++.|++++ +.++.++... +..+ ++|++|++++|......|..+..+
T Consensus 32 ~l~~l~~~~~~l~~lp~---~---~~~~l~~L~L~~-n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK---D---LPPDTALLDLQN-NKITEIKDGD----FKNL-KNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp ETTEEECTTSCCCSCCC---S---CCTTCCEEECCS-SCCCCBCTTT----TTTC-TTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CCeEEEecCCCccccCc---c---CCCCCeEEECCC-CcCCEeChhh----hccC-CCCCEEECCCCcCCeeCHHHhcCC
Confidence 67778887776665422 1 135777788877 4566665532 2223 778888888877666667778888
Q ss_pred CCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCC--cccC-CCCCCCCce
Q 002129 549 SSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLT--YIAG-VQLPPSLKR 625 (962)
Q Consensus 549 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~-~~~~~~L~~ 625 (962)
++|++|++++|. ++.+|.. ..++|++|++++|. ++.++...+ ..+++|++|++++|..-. ..+. ....++|+.
T Consensus 100 ~~L~~L~Ls~n~-l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 100 VKLERLYLSKNQ-LKELPEK-MPKTLQELRVHENE-ITKVRKSVF-NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp TTCCEEECCSSC-CSBCCSS-CCTTCCEEECCSSC-CCBBCHHHH-TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCEEECCCCc-CCccChh-hcccccEEECCCCc-ccccCHhHh-cCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 888888888864 4556543 23788888888887 445544443 677888888888754321 1111 022344444
Q ss_pred EEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchh
Q 002129 626 LKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLES 705 (962)
Q Consensus 626 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~ 705 (962)
|+++++. ++.++ . .++++|++|++++|.+.+.
T Consensus 176 L~l~~n~-l~~l~----------------------------------~-------------~~~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 176 IRIADTN-ITTIP----------------------------------Q-------------GLPPSLTELHLDGNKITKV 207 (330)
T ss_dssp EECCSSC-CCSCC----------------------------------S-------------SCCTTCSEEECTTSCCCEE
T ss_pred EECCCCc-cccCC----------------------------------c-------------cccccCCEEECCCCcCCcc
Confidence 4444432 11111 0 0114566666666665555
Q ss_pred hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCcc-ccCC
Q 002129 706 IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPK-GLHN 784 (962)
Q Consensus 706 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~ 784 (962)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+..+|..+..+++|++|++++|+. ..++. .+..
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i-~~~~~~~f~~ 285 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNI-SAIGSNDFCP 285 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCC-CCCCTTSSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcC-CccChhhcCC
Confidence 5556666666666666666655544445556666666666666 4445555555555555555555552 22221 1211
Q ss_pred CcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129 785 LKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC 847 (962)
Q Consensus 785 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 847 (962)
. ......+.++.+++++|+........ ..+..+++++.+++++|
T Consensus 286 ~-----------------~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 286 P-----------------GYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp S-----------------SCCTTSCCCSEEECCSSSSCGGGSCG--GGGTTCCCGGGEEC---
T ss_pred c-----------------ccccccccccceEeecCcccccccCc--cccccccceeEEEeccc
Confidence 0 00011245666666666654322211 45777888888888775
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.4e-20 Score=203.51 Aligned_cols=294 Identities=15% Similarity=0.111 Sum_probs=159.2
Q ss_pred CcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccCCCC
Q 002129 469 KLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSSLSL 548 (962)
Q Consensus 469 ~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~~~l 548 (962)
+++.++++++.++.+.. .. .++|+.|++++ +.++.++... +..+ ++|++|++++|......|..+..+
T Consensus 34 ~l~~l~~~~~~l~~ip~---~~---~~~l~~L~l~~-n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK---EI---SPDTTLLDLQN-NDISELRKDD----FKGL-QHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSSCCSSCCS---CC---CTTCCEEECCS-SCCCEECTTT----TTTC-TTCCEEECCSSCCCEECGGGSTTC
T ss_pred cCCEEECCCCCccccCC---CC---CCCCeEEECCC-CcCCccCHhH----hhCC-CCCcEEECCCCccCccCHhHhhCc
Confidence 57778887777665422 11 35777777777 4455554432 2222 777777777777655556677778
Q ss_pred CCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCC--cccCC-CCCCCCce
Q 002129 549 SSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLT--YIAGV-QLPPSLKR 625 (962)
Q Consensus 549 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~-~~~~~L~~ 625 (962)
++|++|++++|. ++.+|.... ++|++|++++|. ++.++...+ ..+++|++|++++|..-. ..+.. ... +|+.
T Consensus 102 ~~L~~L~L~~n~-l~~l~~~~~-~~L~~L~l~~n~-i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 102 RKLQKLYISKNH-LVEIPPNLP-SSLVELRIHDNR-IRKVPKGVF-SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp TTCCEEECCSSC-CCSCCSSCC-TTCCEEECCSSC-CCCCCSGGG-SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred CCCCEEECCCCc-CCccCcccc-ccCCEEECCCCc-cCccCHhHh-CCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 888888887753 445554322 778888888776 555555433 667778888777753211 11111 111 4444
Q ss_pred EEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCchh
Q 002129 626 LKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLES 705 (962)
Q Consensus 626 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~ 705 (962)
|+++++. ++.++ . .++++|++|++++|.+.+.
T Consensus 177 L~l~~n~-l~~l~----------------------------------~-------------~~~~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 177 LRISEAK-LTGIP----------------------------------K-------------DLPETLNELHLDHNKIQAI 208 (332)
T ss_dssp CBCCSSB-CSSCC----------------------------------S-------------SSCSSCSCCBCCSSCCCCC
T ss_pred EECcCCC-CCccC----------------------------------c-------------cccCCCCEEECCCCcCCcc
Confidence 4444432 11111 0 0114566666666665555
Q ss_pred hhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCC
Q 002129 706 IAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNL 785 (962)
Q Consensus 706 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l 785 (962)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .++.+|..+..+++|+.|++++|+....-+..+...
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 5555666666666666666555544445556666666666665 344555544444555555555554222111112110
Q ss_pred cccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129 786 KSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC 847 (962)
Q Consensus 786 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 847 (962)
......+.|+.+++++|+........ ..+..+++|+.+++++|
T Consensus 288 -----------------~~~~~~~~l~~L~l~~N~~~~~~~~~--~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 288 -----------------GFGVKRAYYNGISLFNNPVPYWEVQP--ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp -----------------SCCSSSCCBSEEECCSSSSCGGGSCG--GGGTTBCCSTTEEC---
T ss_pred -----------------ccccccccccceEeecCcccccccCc--ccccccchhhhhhcccc
Confidence 00011345666666666654222211 45777888888888775
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=3.4e-20 Score=200.34 Aligned_cols=180 Identities=12% Similarity=0.057 Sum_probs=86.6
Q ss_pred cCccEEEecCCCCch--hhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129 690 PSLKLLLVWGCSKLE--SIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML 767 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L 767 (962)
++|+.|++++|.... ..+..+..+++|++|++++|.+. .+|..+. ++|++|++++|......|..+..+++|+.|
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 345555555554432 33344555555555555554432 2333222 455555555553222223333344455555
Q ss_pred ccccccccccCccccCCCcccceeecCCCCCCCCCCCC-CCCCccceEeecCchhhhHHHHhcc--ccccccCccceeec
Q 002129 768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED-GLPTNLHVLLINGNMEIWKSMIERG--RGFHRFSSLRQLTI 844 (962)
Q Consensus 768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l 844 (962)
++++|...+..+..+..+++|++|++++| .+..+|.. ..+++|++|++++|.+......... ......+.|+.|++
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 55555533333334455555555555555 33344332 3345555555555554433221000 01123578999999
Q ss_pred ccCCCCCccCCCCCCCCCCCccccCCCccceEeeccC
Q 002129 845 MNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGF 881 (962)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 881 (962)
++|......++. ..+..+.+++.++++++
T Consensus 301 ~~N~~~~~~i~~--------~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 301 FSNPVQYWEIQP--------STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSSSCGGGSCG--------GGGTTCCCGGGEEC---
T ss_pred ecCcccccccCc--------cccccccceeEEEeccc
Confidence 997543333332 34567899999999885
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2.4e-20 Score=200.18 Aligned_cols=219 Identities=21% Similarity=0.348 Sum_probs=133.4
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCC-CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEIL 603 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 603 (962)
+.++.|++++|.. +.+|..+..+++|++|++++|... .+|. +..+++|++|++++|. +..+|..+ ..+++|++|
T Consensus 81 ~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCCEE
T ss_pred cceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCCEE
Confidence 6788899988775 477888888999999999987544 6664 6678899999999987 55777665 678899999
Q ss_pred EecCCCCCCcccCCCC----------CCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccC
Q 002129 604 EISGCDSLTYIAGVQL----------PPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSK 673 (962)
Q Consensus 604 ~l~~c~~l~~~~~~~~----------~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 673 (962)
++++|+.++.+|.... +++|+.|++++|. ++.+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~l------------------------------------ 198 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSL------------------------------------ 198 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCC------------------------------------
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcc------------------------------------
Confidence 9998887776664211 2333333333321 1111
Q ss_pred CCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCccc
Q 002129 674 NELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVS 753 (962)
Q Consensus 674 ~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~ 753 (962)
|..+..+ ++|++|++++|.+.+ +|..+..+++|++|++++|...+.+|..+.++++|++|++++|...+.
T Consensus 199 ---p~~l~~l------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 199 ---PASIANL------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp ---CGGGGGC------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred ---hHhhcCC------CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence 1111111 455555555555443 333455555555555555555555555555555555555555555555
Q ss_pred CCCCCCCcccccccccccccccccCccccCCCcccceeecCC
Q 002129 754 SPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGK 795 (962)
Q Consensus 754 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~ 795 (962)
+|..+..+++|+.|++++|+.++.+|..+.++++|+.+++..
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 555555555555555555555555555555555555555544
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1.3e-19 Score=195.73 Aligned_cols=203 Identities=14% Similarity=0.101 Sum_probs=108.6
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCcccc--ccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQ--TLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML 767 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L 767 (962)
++|++|++++|.+.+..+..+..+++|++|++++|.... ..+..+..+ +|++|++++| .++.+|.... ++|++|
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L 198 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNEL 198 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEE
Confidence 355555666555554444556666666666666666532 344555555 6677777766 4555655443 467777
Q ss_pred ccccccccccCccccCCCcccceeecCCCCCCCCCCC--CCCCCccceEeecCchhhhHHHHhccccccccCccceeecc
Q 002129 768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEE--DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIM 845 (962)
Q Consensus 768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 845 (962)
++++|...+..+..+..+++|++|++++| .+..++. ...+++|++|++++|.+... + ..+..+++|++|+++
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p----~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRV-P----AGLPDLKLLQVVYLH 272 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBC-C----TTGGGCTTCCEEECC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeec-C----hhhhcCccCCEEECC
Confidence 77777654444456667777777777766 3433332 13345566666665554421 1 235667777777777
Q ss_pred cCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCC--cccccccccCCCcCeEeccCCC
Q 002129 846 NCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNL--ERLTSSIVDLQNLTGLVLGNCP 906 (962)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~c~ 906 (962)
+|. +..++..... ........++|+.|++++++.. .-.|..+..+++|+.+++.+|.
T Consensus 273 ~N~--l~~~~~~~~~--~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 273 TNN--ITKVGVNDFC--PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSC--CCBCCTTSSS--CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCC--CCccChhHcc--ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 753 3333322110 0000112456777777775532 1223445666677777776653
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=3.2e-21 Score=205.85 Aligned_cols=126 Identities=16% Similarity=0.074 Sum_probs=62.3
Q ss_pred CccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccc
Q 002129 691 SLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIY 770 (962)
Q Consensus 691 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~ 770 (962)
+|++|++++|.+.+.+|..+..++ |++|++++|.+.+..|..+..+++|++|++++|.....+|. +..+++|++|+++
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR 252 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECC
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECc
Confidence 555555555555555555555554 55555555555555555555555555555555532222222 3334455555555
Q ss_pred cccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecC
Q 002129 771 NCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLING 818 (962)
Q Consensus 771 ~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 818 (962)
+|...+.+|..+..+++|++|++++|.....+|..+.+++|+.+++++
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred CCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcC
Confidence 555444555555555555555555553333343333333333333333
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=7.4e-22 Score=232.64 Aligned_cols=388 Identities=13% Similarity=0.075 Sum_probs=221.3
Q ss_pred CCCCcceEEecccccceeecccCCcccc-CCC-ccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccc---
Q 002129 466 QLPKLEELILSTKEQTYIWKSHDGLLQD-VCS-LKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVK--- 540 (962)
Q Consensus 466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~-l~~-L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~--- 540 (962)
.+++|++|++++|.+++.. ...+.. +++ |++|++++|..+.. .... .+..-+++|++|++++|.....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~---~~~l~~~~~~~L~~L~L~~~~~~~~---~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~ 182 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLD---LDRLAKARADDLETLKLDKCSGFTT---DGLL-SIVTHCRKIKTLLMEESSFSEKDGK 182 (592)
T ss_dssp HCTTCCEEEEESCBCCHHH---HHHHHHHHGGGCCEEEEESCEEEEH---HHHH-HHHHHCTTCSEEECTTCEEECCCSH
T ss_pred hCCCCCeEEeeccEecHHH---HHHHHHhccccCcEEECcCCCCcCH---HHHH-HHHhhCCCCCEEECccccccCcchh
Confidence 4677888888877654321 111222 334 88888888764322 1111 1122237788888888764332
Q ss_pred -cCccCCCCCCccEEEecCCCCc----cccCC-CCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcc
Q 002129 541 -LPQSSLSLSSLREIEIYGCRSL----VSFPE-VALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYI 614 (962)
Q Consensus 541 -~~~~~~~l~~L~~L~l~~~~~l----~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 614 (962)
++.....+++|++|++++|..- ..++. ...+++|++|++++|. +..++..+ ..+++|++|+++++......
T Consensus 183 ~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 183 WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCCCTTC
T ss_pred HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH--hhhhHHHhhcccccccccch
Confidence 2233445777888888775432 12221 2346778888887776 44455433 56677787777753322111
Q ss_pred ----cCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCcc
Q 002129 615 ----AGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPP 690 (962)
Q Consensus 615 ----~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~ 690 (962)
.....+++|+.+.+.++. ...++..+..+ +
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~----------------------------------------~~~l~~~~~~~------~ 293 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMG----------------------------------------PNEMPILFPFA------A 293 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCC----------------------------------------TTTGGGGGGGG------G
T ss_pred HHHHHHhhccccccccCccccc----------------------------------------hhHHHHHHhhc------C
Confidence 111233455555544421 11112222222 6
Q ss_pred CccEEEecCCCCchhh-hhhccCCCCcceEeecCCccccccCccccCCCCccEEEccc----------CCCcccC--CCC
Q 002129 691 SLKLLLVWGCSKLESI-AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIAS----------CGNLVSS--PEG 757 (962)
Q Consensus 691 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~----------~~~l~~~--~~~ 757 (962)
+|++|++++|...+.. +..+..+++|++|+++++-....++.....+++|++|++++ |..++.. +..
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 8888888888854443 34577888888888884333333444446678888888884 5444421 111
Q ss_pred CCCcccccccccccccccccCccccCC-CcccceeecCC---CCCCCCCCCC-------CCCCccceEeecCch--hhhH
Q 002129 758 GLPCAKLAMLAIYNCKRLEALPKGLHN-LKSLQELRIGK---GVALPSLEED-------GLPTNLHVLLINGNM--EIWK 824 (962)
Q Consensus 758 ~~~~~~L~~L~l~~c~~l~~~~~~~~~-l~~L~~L~l~~---~~~l~~~~~~-------~~~~~L~~L~l~~~~--~~~~ 824 (962)
...+++|++|+++.+......+..+.. +++|++|++++ |+.++..|.. ..+++|++|+++.|. ....
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 122568888888655544444444443 78888888874 4456554321 236889999997655 2222
Q ss_pred HHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcc--cccccccCCCcCeEec
Q 002129 825 SMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLER--LTSSIVDLQNLTGLVL 902 (962)
Q Consensus 825 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l 902 (962)
... .....+++|++|++++|......++. ....+++|++|++++|+ ++. ++..+..+++|++|++
T Consensus 454 ~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~---------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 454 GLS---YIGQYSPNVRWMLLGYVGESDEGLME---------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp HHH---HHHHSCTTCCEEEECSCCSSHHHHHH---------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred HHH---HHHHhCccceEeeccCCCCCHHHHHH---------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence 221 22345788999999987532222221 12356889999999987 543 4444567899999999
Q ss_pred cCCCCCccCCCCCCcccccee
Q 002129 903 GNCPKLKYFPEKGLPSSLLQL 923 (962)
Q Consensus 903 ~~c~~l~~l~~~~~~~sL~~L 923 (962)
++|+ ++...-..++.++..+
T Consensus 521 s~n~-it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 521 QGYR-ASMTGQDLMQMARPYW 540 (592)
T ss_dssp ESCB-CCTTCTTGGGGCCTTE
T ss_pred cCCc-CCHHHHHHHHHhCCCc
Confidence 9987 5544332334333333
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=9.3e-22 Score=231.80 Aligned_cols=326 Identities=15% Similarity=0.116 Sum_probs=158.6
Q ss_pred CCCcceEEecccccceeecc-cCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccccCccC
Q 002129 467 LPKLEELILSTKEQTYIWKS-HDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVKLPQSS 545 (962)
Q Consensus 467 ~~~L~~L~l~~n~~~~i~~~-~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~~~~~~ 545 (962)
+++|++|++++|.+++.... .......+++|++|++++ +.+..+........+..+ ++|+.|++++|... .++..+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~-n~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~-~l~~~~ 239 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYM-TEFAKISPKDLETIARNC-RSLVSVKVGDFEIL-ELVGFF 239 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTT-CCCSSCCHHHHHHHHHHC-TTCCEEECSSCBGG-GGHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeec-cCCCccCHHHHHHHHhhC-CCCcEEeccCccHH-HHHHHH
Confidence 45666666666554332110 011234566677777765 333322222222222233 77777777776543 355566
Q ss_pred CCCCCccEEEecCCCCccc----cCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccC---CC
Q 002129 546 LSLSSLREIEIYGCRSLVS----FPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAG---VQ 618 (962)
Q Consensus 546 ~~l~~L~~L~l~~~~~l~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~ 618 (962)
..+++|++|+++.+..... ......+++|+.++++++. ...++..+ ..+++|++|++++|. ++.... ..
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L~~L~Ls~~~-l~~~~~~~~~~ 315 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQIRKLDLLYAL-LETEDHCTLIQ 315 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGCCEEEETTCC-CCHHHHHHHHT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHH--hhcCCCcEEecCCCc-CCHHHHHHHHH
Confidence 6777788877775332211 1234556777777777753 34444433 566778888888776 332111 13
Q ss_pred CCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEec
Q 002129 619 LPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVW 698 (962)
Q Consensus 619 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~ 698 (962)
.+++|+.|++.++..-..++ .....+ ++|++|+++
T Consensus 316 ~~~~L~~L~L~~~~~~~~l~---------------------------------------~~~~~~------~~L~~L~L~ 350 (592)
T 3ogk_B 316 KCPNLEVLETRNVIGDRGLE---------------------------------------VLAQYC------KQLKRLRIE 350 (592)
T ss_dssp TCTTCCEEEEEGGGHHHHHH---------------------------------------HHHHHC------TTCCEEEEE
T ss_pred hCcCCCEEeccCccCHHHHH---------------------------------------HHHHhC------CCCCEEEee
Confidence 45666666665321000000 000000 445555555
Q ss_pred C----------CCCchh--hhhhccCCCCcceEeecCCccccccCccccC-CCCccEEEccc---CCCcccCCCC-----
Q 002129 699 G----------CSKLES--IAEMLDNNTSLEKINISGCGNLQTLPSGLHN-LCQLQEISIAS---CGNLVSSPEG----- 757 (962)
Q Consensus 699 ~----------~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~L~~---~~~l~~~~~~----- 757 (962)
+ |...+. ++..+..+++|++|+++.+.+....+..+.. +++|++|++++ |+.++..|..
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~ 430 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH
Confidence 3 322221 2233445666666666544444433333333 56666666653 3344433221
Q ss_pred -CCCcccccccccccccc--cccCcccc-CCCcccceeecCCCCCCCC--CCC-CCCCCccceEeecCchhhhHHHHhcc
Q 002129 758 -GLPCAKLAMLAIYNCKR--LEALPKGL-HNLKSLQELRIGKGVALPS--LEE-DGLPTNLHVLLINGNMEIWKSMIERG 830 (962)
Q Consensus 758 -~~~~~~L~~L~l~~c~~--l~~~~~~~-~~l~~L~~L~l~~~~~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~ 830 (962)
...+++|+.|++++|.. ....+..+ ..+++|++|++++|. +.. ++. ...+++|++|++++|++......
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--- 506 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA--- 506 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH---
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHH---
Confidence 12245566666655442 11111122 235666666666663 221 111 13346666666666664332222
Q ss_pred ccccccCccceeecccCC
Q 002129 831 RGFHRFSSLRQLTIMNCD 848 (962)
Q Consensus 831 ~~~~~l~~L~~L~l~~~~ 848 (962)
..+..+++|++|++++|.
T Consensus 507 ~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHCSSCCEEEEESCB
T ss_pred HHHHhcCccCeeECcCCc
Confidence 233456777777777763
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=4.2e-19 Score=193.71 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=67.6
Q ss_pred cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhhccCCCcEEe
Q 002129 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLK 165 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 165 (962)
.++...+.+++++.++.+|..+. .+|++|++++|.++.+|. .++++++|++|++++|...+..|..++++++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 44555567778888888887665 378888888888887765 578888888888888543333355678888888888
Q ss_pred ccCCccccccccc-cccccccccc
Q 002129 166 NSNTKSLEEMPVG-IGRLTCLQTL 188 (962)
Q Consensus 166 l~~n~~~~~lp~~-~~~L~~L~~L 188 (962)
+++|. +..+|.. ++++++|++|
T Consensus 107 Ls~n~-l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 107 LSYNY-LSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp CCSSC-CSSCCHHHHTTCTTCSEE
T ss_pred CCCCc-CCcCCHhHhCCCccCCEE
Confidence 88887 5555543 4444444433
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=1.3e-18 Score=200.81 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=62.4
Q ss_pred CCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEecc
Q 002129 88 LQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNS 167 (962)
Q Consensus 88 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 167 (962)
..++++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|++++| .+..+|. .+++|++|+++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEEC
T ss_pred CCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECc
Confidence 3458888888888888887776 788888888888888877 5778888888885 4667776 67888888888
Q ss_pred CCcccccccc
Q 002129 168 NTKSLEEMPV 177 (962)
Q Consensus 168 ~n~~~~~lp~ 177 (962)
+|. +..+|.
T Consensus 110 ~N~-l~~l~~ 118 (622)
T 3g06_A 110 SNP-LTHLPA 118 (622)
T ss_dssp SCC-CCCCCC
T ss_pred CCc-CCCCCC
Confidence 887 555554
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=6.3e-22 Score=225.43 Aligned_cols=281 Identities=21% Similarity=0.208 Sum_probs=156.3
Q ss_pred CcceEEecccccceee-cccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccc----cCc
Q 002129 469 KLEELILSTKEQTYIW-KSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVK----LPQ 543 (962)
Q Consensus 469 ~L~~L~l~~n~~~~i~-~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~----~~~ 543 (962)
+|++|++++|.++... ......+..+++|++|++++|. +...........+....++|++|++++|..... ++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 6777777777765432 1112345667788888888743 443322211111111113588888888765442 344
Q ss_pred cCCCCCCccEEEecCCCCccccC--CC-----CCCCCCcEEEEcCCCCCCCC-----hhhhhcCCCCCccEEEecCCCCC
Q 002129 544 SSLSLSSLREIEIYGCRSLVSFP--EV-----ALPSKLKKIEISSCDALKSL-----PEAWMCDTNSSLEILEISGCDSL 611 (962)
Q Consensus 544 ~~~~l~~L~~L~l~~~~~l~~~~--~~-----~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~L~~L~l~~c~~l 611 (962)
.+..+++|++|++++|. ++... .+ ...++|++|++++|. ++.. +..+ ..+++|++|++++|. +
T Consensus 165 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~-l 239 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIV--ASKASLRELALGSNK-L 239 (461)
T ss_dssp HHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHH--HHCTTCCEEECCSSB-C
T ss_pred HHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHH--HhCCCccEEeccCCc-C
Confidence 55567788888888865 33211 11 124578888888886 4442 2222 456788888888763 3
Q ss_pred Cccc-----CC--CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129 612 TYIA-----GV--QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE 684 (962)
Q Consensus 612 ~~~~-----~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 684 (962)
+... .. ...++|+.|++++| .++.... ..++..+..+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~----------------------------------~~l~~~l~~~- 283 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGC----------------------------------GDLCRVLRAK- 283 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHH----------------------------------HHHHHHHHHC-
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHH----------------------------------HHHHHHHhhC-
Confidence 3211 10 12356666666665 2222100 0011111111
Q ss_pred cCCCccCccEEEecCCCCchhhhhhcc-----CCCCcceEeecCCccccc----cCccccCCCCccEEEcccCCCcccC-
Q 002129 685 VGNLPPSLKLLLVWGCSKLESIAEMLD-----NNTSLEKINISGCGNLQT----LPSGLHNLCQLQEISIASCGNLVSS- 754 (962)
Q Consensus 685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~l~~~- 754 (962)
++|++|++++|.+.+..+..+. ..++|++|++++|.+... ++..+..+++|++|++++|. ++..
T Consensus 284 -----~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 357 (461)
T 1z7x_W 284 -----ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAG 357 (461)
T ss_dssp -----TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHH
T ss_pred -----CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-ccccc
Confidence 5777788887776554332222 336788888887776544 44555667788888888773 3321
Q ss_pred CCCC-----CCcccccccccccccccc----cCccccCCCcccceeecCCCC
Q 002129 755 PEGG-----LPCAKLAMLAIYNCKRLE----ALPKGLHNLKSLQELRIGKGV 797 (962)
Q Consensus 755 ~~~~-----~~~~~L~~L~l~~c~~l~----~~~~~~~~l~~L~~L~l~~~~ 797 (962)
+... .+.++|++|++++|.... .+|..+..+++|++|++++|+
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 1110 114577788888776443 566667777788888888774
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=190.58 Aligned_cols=249 Identities=15% Similarity=0.147 Sum_probs=169.9
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccC--CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFP--EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEI 602 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 602 (962)
++|++|++++|......+..+..+++|++|++++|. ++.++ .+..+++|++|++++|. ++.++...+ ..+++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh-CCCccCCE
Confidence 567777777776544444467888888888888864 44443 36667888888888887 566666544 77888999
Q ss_pred EEecCCCCCCcccC---CCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCcccc
Q 002129 603 LEISGCDSLTYIAG---VQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPAT 679 (962)
Q Consensus 603 L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 679 (962)
|++++| .++.++. ....++|+.|++++|..++.++.. .
T Consensus 129 L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------------------------------------~ 169 (353)
T 2z80_A 129 LNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK--------------------------------------D 169 (353)
T ss_dssp EECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT--------------------------------------T
T ss_pred EECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHH--------------------------------------H
Confidence 999885 4555554 244567777777776544443310 0
Q ss_pred ccccccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCC
Q 002129 680 LESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGL 759 (962)
Q Consensus 680 l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 759 (962)
+ +.+ ++|++|++++|...+..|..+..+++|++|++++|......+..+..+++|++|++++| .++.++....
T Consensus 170 ~-----~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l 242 (353)
T 2z80_A 170 F-----AGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT-DLDTFHFSEL 242 (353)
T ss_dssp T-----TTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC--
T ss_pred c-----cCC-CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC-cccccccccc
Confidence 1 111 68899999999888888888999999999999988764333233456889999999988 4444432211
Q ss_pred ----Ccccccccccccccc----cccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhh
Q 002129 760 ----PCAKLAMLAIYNCKR----LEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIW 823 (962)
Q Consensus 760 ----~~~~L~~L~l~~c~~----l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~ 823 (962)
..+.++.++++++.. +..+|..+..+++|++|++++| .++.+|.. ..+++|++|++++|+...
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 133455555555543 2356778889999999999998 56677763 456778888888876543
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=2.1e-21 Score=221.07 Aligned_cols=236 Identities=18% Similarity=0.171 Sum_probs=124.9
Q ss_pred CCCcceEEecccccceeecc-cCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCccc----c
Q 002129 467 LPKLEELILSTKEQTYIWKS-HDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLVK----L 541 (962)
Q Consensus 467 ~~~L~~L~l~~n~~~~i~~~-~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~~----~ 541 (962)
.++|++|++++|.++..... ....+..+++|++|++++|. +...........+....++|++|++++|..... +
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 45678888887766643211 12234556788888888743 544333222222211124788888888765442 4
Q ss_pred CccCCCCCCccEEEecCCCCcccc------CC-CCCCCCCcEEEEcCCCCCCC-----ChhhhhcCCCCCccEEEecCCC
Q 002129 542 PQSSLSLSSLREIEIYGCRSLVSF------PE-VALPSKLKKIEISSCDALKS-----LPEAWMCDTNSSLEILEISGCD 609 (962)
Q Consensus 542 ~~~~~~l~~L~~L~l~~~~~l~~~------~~-~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~l~~L~~L~l~~c~ 609 (962)
+..+..+++|++|++++|. ++.. +. ...+++|++|++++|. ++. ++..+ ..+++|++|++++|.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVL--RAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHH--HHCTTCCEEECTTCC
T ss_pred HHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHH--hhCCCcceEECCCCC
Confidence 5556667888888888864 3321 11 1236778888888875 444 23322 446777777777753
Q ss_pred CCCcc-----cCC--CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccc
Q 002129 610 SLTYI-----AGV--QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLES 682 (962)
Q Consensus 610 ~l~~~-----~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 682 (962)
++.. ... ...++|+.|++++|. ++... ...++..+..
T Consensus 296 -i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~----------------------------------~~~l~~~l~~ 339 (461)
T 1z7x_W 296 -LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAAC----------------------------------CSHFSSVLAQ 339 (461)
T ss_dssp -CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGG----------------------------------HHHHHHHHHH
T ss_pred -CchHHHHHHHHHhccCCccceeeEcCCCC-CchHH----------------------------------HHHHHHHHhh
Confidence 2211 100 112355555555543 11100 0001111111
Q ss_pred cccCCCccCccEEEecCCCCchhhhhhcc----C-CCCcceEeecCCcccc----ccCccccCCCCccEEEcccCC
Q 002129 683 LEVGNLPPSLKLLLVWGCSKLESIAEMLD----N-NTSLEKINISGCGNLQ----TLPSGLHNLCQLQEISIASCG 749 (962)
Q Consensus 683 l~~~~l~~~L~~L~l~~~~~~~~~~~~~~----~-l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~~~ 749 (962)
. ++|++|++++|.+.+..+..+. . .++|++|++++|.+.. .+|..+..+++|++|++++|+
T Consensus 340 ~------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 340 N------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp C------SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred C------CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 1 5666666666665544333222 1 5566666776666553 455556666666666666663
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.9e-17 Score=191.17 Aligned_cols=214 Identities=29% Similarity=0.344 Sum_probs=127.8
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
.+++.|++++|.. +.+|..+. ++|++|++++| .++.+|. .+++|++|++++|. ++.+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 5689999998764 47776554 78999999986 4667776 67889999999987 666764 568899999
Q ss_pred ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129 605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE 684 (962)
Q Consensus 605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 684 (962)
+++| .++.++. .+++|+.|++++|. ++.++..
T Consensus 108 Ls~N-~l~~l~~--~l~~L~~L~L~~N~-l~~lp~~-------------------------------------------- 139 (622)
T 3g06_A 108 IFSN-PLTHLPA--LPSGLCKLWIFGNQ-LTSLPVL-------------------------------------------- 139 (622)
T ss_dssp ECSC-CCCCCCC--CCTTCCEEECCSSC-CSCCCCC--------------------------------------------
T ss_pred CcCC-cCCCCCC--CCCCcCEEECCCCC-CCcCCCC--------------------------------------------
Confidence 9885 5555654 55677777777663 3333310
Q ss_pred cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcccc
Q 002129 685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKL 764 (962)
Q Consensus 685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L 764 (962)
+++|++|++++|.+.+ +|. .+++|+.|++++|.+.+ +| ..+++|+.|++++| .++.+|.. .++|
T Consensus 140 ----l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N-~l~~l~~~---~~~L 203 (622)
T 3g06_A 140 ----PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDN-QLASLPTL---PSEL 203 (622)
T ss_dssp ----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS-CCSCCCCC---CTTC
T ss_pred ----CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCC-CCCCCCCc---cchh
Confidence 0456666666654433 221 23455666666554333 33 33455666666665 34444432 2356
Q ss_pred cccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchh
Q 002129 765 AMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNME 821 (962)
Q Consensus 765 ~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~ 821 (962)
+.|++++|. +..+|. .+++|++|++++| .++.+| ..+++|+.|++++|.+
T Consensus 204 ~~L~L~~N~-l~~l~~---~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~L 253 (622)
T 3g06_A 204 YKLWAYNNR-LTSLPA---LPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGNRL 253 (622)
T ss_dssp CEEECCSSC-CSSCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSSCC
T ss_pred hEEECcCCc-ccccCC---CCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCCCC
Confidence 666666554 334443 2355666666655 444444 2334555555555543
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=5e-21 Score=225.79 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=45.4
Q ss_pred cCccEEEecCCCCchhhhhhccC-CCCcceEeecCCccccccCccc-cCCCCccEEEcccCCCcccCCC-CCCCcccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDN-NTSLEKINISGCGNLQTLPSGL-HNLCQLQEISIASCGNLVSSPE-GGLPCAKLAM 766 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~l~~~~~-~~~~~~~L~~ 766 (962)
++|++|++++ ...+..+..+.. +++|+.|++++|......+..+ .++++|++|+|++|+....... ....+++|+.
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 5677777765 334433333333 6777777777776544332222 4567777777777754111111 1222556666
Q ss_pred cccccccc
Q 002129 767 LAIYNCKR 774 (962)
Q Consensus 767 L~l~~c~~ 774 (962)
|++++|+.
T Consensus 511 L~l~~~~~ 518 (594)
T 2p1m_B 511 LWMSSCSV 518 (594)
T ss_dssp EEEESSCC
T ss_pred EeeeCCCC
Confidence 66666664
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.9e-18 Score=184.42 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=92.4
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCcccc-ccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQ-TLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLA 768 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~ 768 (962)
++|++|++++|...+..+..+..+++|++|++++|...+ .+|..+..+++|++|++++|......|..+..+++|+.|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 577777777777777777777778888888888877665 4677777788888888888744333455566677888888
Q ss_pred cccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhh
Q 002129 769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIW 823 (962)
Q Consensus 769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~ 823 (962)
+++|...+..+..+..+++|++|++++|......+.. ..+++|++|++++|++..
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 8888754444446777888888888887543333322 223577778887777643
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=7.9e-18 Score=190.17 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=50.2
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAI 769 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l 769 (962)
++|++|++++|.+.+. | .+..+++|++|++++|.+.+..|..+.++++|++|++++|......+..+..+++|+.|++
T Consensus 196 ~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 273 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273 (452)
T ss_dssp TTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEEC
Confidence 3455555555543332 1 2445555555555555544444455555555555555555322222333334455555555
Q ss_pred ccccccccCccccCCCcccceeecCCCC
Q 002129 770 YNCKRLEALPKGLHNLKSLQELRIGKGV 797 (962)
Q Consensus 770 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~ 797 (962)
++|......+..+..+++|+.|++++|+
T Consensus 274 ~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 274 AHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCcCCccChHHhccccCCCEEEccCCC
Confidence 5554332222334555555555555553
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1.2e-20 Score=222.54 Aligned_cols=84 Identities=14% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCCcceeeccCcccccccccCCC----------CcccccCCCccEEEeccCCcccccCC----CCCCCccEEEEcCcccc
Q 002129 347 FPRLETLRFEDLQEWEDSIPHGS----------SQGVERFPKLRELRILRCSKLKGTFP----EHLPALEMLVIEGCEEL 412 (962)
Q Consensus 347 ~~~L~~L~l~~~~~l~~~~~~~~----------~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~l 412 (962)
|++|++|.+.+++.......... ..-...+++|++|++++| .+++..+ ..+++|++|++.+|..+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 78888888887765432211000 000134667777777776 3432211 23455666666555322
Q ss_pred cc-----cCCCCCcceEEEEccCC
Q 002129 413 LV-----SVSSLPALCKFIISGCK 431 (962)
Q Consensus 413 ~~-----~~~~l~~L~~L~l~~~~ 431 (962)
.. ....+++|++|++++|.
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCE
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCc
Confidence 11 12234455555555443
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.4e-18 Score=185.58 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=66.0
Q ss_pred CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCccc---CccccCCCcCcEEEcCCCcccccChhhhcc
Q 002129 59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILEL---PDSVGDLRYLRYLNLSGTEIRTLPESVSKL 134 (962)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L 134 (962)
++|++|.+.++. ...+++.++ ++++|++|++++|.++.+ |..+..+++|++|+|++|.++.+|..+..+
T Consensus 28 ~~l~~L~L~~n~-------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNK-------LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCEEECCCCc-------cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 355555554432 234455544 566666666666665533 344555666666666666666665556666
Q ss_pred CCccEEecCCCcchhccc--hhhhccCCCcEEeccCCcccccccccccccccccccc
Q 002129 135 YNLHSLLLEDCDRLEKLC--ADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLC 189 (962)
Q Consensus 135 ~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~ 189 (962)
++|++|++++| .+..+| ..+..+++|++|++++|.+....|..++.+++|++|+
T Consensus 101 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 101 EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 66666666653 333333 2455666666666666652223333355555555553
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=8.5e-18 Score=189.17 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=119.6
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCC-CCCCcccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPE-GGLPCAKLAMLA 768 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~~L~~L~ 768 (962)
++|++|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|++|++++|. +..++. .+..+++|+.|+
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeC
Confidence 466666666666655555666666666666666665554444456666666666666663 444433 344466666666
Q ss_pred cccccccccCcc-ccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129 769 IYNCKRLEALPK-GLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC 847 (962)
Q Consensus 769 l~~c~~l~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 847 (962)
+++|..+..++. .+.++++|++|++++| .++.+|....+++|++|++++|.+....+ ..+..+++|++|++++|
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCC
Confidence 666655555544 4566666777777666 55556655556667777777666554333 45666777777777765
Q ss_pred CCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccc-cccCCCcCeEeccCCC
Q 002129 848 DDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSS-IVDLQNLTGLVLGNCP 906 (962)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 906 (962)
. +..++. .++..+++|++|+|++ +.++.+|.. +..+++|++|++.+++
T Consensus 242 ~--l~~~~~--------~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 242 Q--IQVIER--------NAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp C--CCEECT--------TSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred c--eeEECh--------hhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 2 222222 1234566777777776 456666543 3556677777776643
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1.5e-18 Score=183.11 Aligned_cols=204 Identities=14% Similarity=0.104 Sum_probs=112.8
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCcccc-C-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSF-P-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEI 602 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 602 (962)
++|++|++++|......+..+..+++|++|++++|. ++.+ + .+..+++|++|++++|..++.++...+ ..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT-TTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHh-cCCcCCCE
Confidence 556666666655544444456666777777777653 3333 2 244456666666666654555533322 45566666
Q ss_pred EEecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccc
Q 002129 603 LEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLES 682 (962)
Q Consensus 603 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 682 (962)
|++++|. ++.++... +
T Consensus 110 L~l~~n~-l~~~~~~~-------------------------------------------------------------~-- 125 (285)
T 1ozn_A 110 LHLDRCG-LQELGPGL-------------------------------------------------------------F-- 125 (285)
T ss_dssp EECTTSC-CCCCCTTT-------------------------------------------------------------T--
T ss_pred EECCCCc-CCEECHhH-------------------------------------------------------------h--
Confidence 6666532 11111100 0
Q ss_pred cccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcc
Q 002129 683 LEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCA 762 (962)
Q Consensus 683 l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 762 (962)
..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+.++++|++|++++|......|..+..++
T Consensus 126 ---~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 201 (285)
T 1ozn_A 126 ---RGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201 (285)
T ss_dssp ---TTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred ---hCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence 000 4566666666665555555566666666666666655544444566666667777766644333455555566
Q ss_pred cccccccccccccccCccccCCCcccceeecCCCCC
Q 002129 763 KLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVA 798 (962)
Q Consensus 763 ~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~ 798 (962)
+|+.|++++|...+..+..+..+++|++|++++|+.
T Consensus 202 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 666666666664433334466667777777776643
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=2.7e-19 Score=191.65 Aligned_cols=237 Identities=11% Similarity=0.040 Sum_probs=159.6
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
++|++|++++|......|..+..+++|++|++++|.... ++++..+++|++|++++|. ++.++ ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~L~~L~Ls~n~-l~~l~------~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNY-VQELL------VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEEETTCTTCCEEECCSSE-EEEEE------ECTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chhhhhcCCCCEEECcCCc-ccccc------CCCCcCEEE
Confidence 577778887776655555667777777777777754332 3335556666666666665 33222 124455555
Q ss_pred ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129 605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE 684 (962)
Q Consensus 605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 684 (962)
+++ |. +..++. .
T Consensus 106 l~~-----------------------n~-l~~~~~----------------------------------~---------- 117 (317)
T 3o53_A 106 AAN-----------------------NN-ISRVSC----------------------------------S---------- 117 (317)
T ss_dssp CCS-----------------------SC-CSEEEE----------------------------------C----------
T ss_pred CCC-----------------------Cc-cCCcCc----------------------------------c----------
Confidence 544 31 111110 0
Q ss_pred cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccc-cCCCCccEEEcccCCCcccCCCCCCCccc
Q 002129 685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGL-HNLCQLQEISIASCGNLVSSPEGGLPCAK 763 (962)
Q Consensus 685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 763 (962)
.+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++| .++.++... .+++
T Consensus 118 --~~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~l~~ 192 (317)
T 3o53_A 118 --RG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAK 192 (317)
T ss_dssp --CC-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-CCTT
T ss_pred --cc-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccc-cccc
Confidence 01 578888888888777777778888889999998888777666655 46888999999988 455555433 3678
Q ss_pred ccccccccccccccCccccCCCcccceeecCCCCCCCCCCCC-CCCCccceEeecCchhhhHHHHhccccccccCcccee
Q 002129 764 LAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQL 842 (962)
Q Consensus 764 L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 842 (962)
|++|++++|. +..+|..+..+++|++|++++| .+..+|.. ..+++|+.|++++|+......+ ..+..++.|+.|
T Consensus 193 L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~---~~~~~~~~L~~l 267 (317)
T 3o53_A 193 LKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTV 267 (317)
T ss_dssp CCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHH---HHHHTCHHHHHH
T ss_pred CCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHH---HHHhccccceEE
Confidence 9999999987 4556667888899999999998 55566553 5568889999998887733332 356778888888
Q ss_pred ecccC
Q 002129 843 TIMNC 847 (962)
Q Consensus 843 ~l~~~ 847 (962)
++.++
T Consensus 268 ~l~~~ 272 (317)
T 3o53_A 268 AKQTV 272 (317)
T ss_dssp HHHHH
T ss_pred ECCCc
Confidence 88764
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=6.4e-18 Score=190.90 Aligned_cols=221 Identities=17% Similarity=0.138 Sum_probs=147.7
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCcccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAMLA 768 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L~ 768 (962)
+++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|++|+|++| .++.+|.. +..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 67777777777777766777777777777777777766666667777777777777777 45555554 44467777777
Q ss_pred cccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHhccccccccCccceeeccc
Q 002129 769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMN 846 (962)
Q Consensus 769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 846 (962)
+++|......+..+.++++|++|++++|..+..++.. ..+++|++|++++|.+... ..+..+++|++|++++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMSG 227 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEECTT
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------ccccccccccEEECcC
Confidence 7777744333346677777777777777677666543 4467777777777766543 2366777777777777
Q ss_pred CCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCccc-ccccccCCCcCeEeccCCCCCccCCCCCC--cccccee
Q 002129 847 CDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERL-TSSIVDLQNLTGLVLGNCPKLKYFPEKGL--PSSLLQL 923 (962)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~sL~~L 923 (962)
|. ...++. ..+..+++|++|++++ +.+..+ +..+.++++|++|++++| +++.++...+ .++|+.|
T Consensus 228 N~--l~~~~~--------~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 228 NH--FPEIRP--------GSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp SC--CSEECG--------GGGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEE
T ss_pred Cc--CcccCc--------ccccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEE
Confidence 63 222221 2235667777777777 355555 345667777777777775 5777766544 2677777
Q ss_pred eccCCh
Q 002129 924 SINRCP 929 (962)
Q Consensus 924 ~i~~c~ 929 (962)
+++++|
T Consensus 296 ~L~~Np 301 (452)
T 3zyi_A 296 HLHHNP 301 (452)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 777665
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=187.47 Aligned_cols=222 Identities=16% Similarity=0.162 Sum_probs=185.9
Q ss_pred ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCccccccc
Q 002129 689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAML 767 (962)
Q Consensus 689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L 767 (962)
|++++.|++++|.+....+..|.++++|++|+|++|.+.+..+..+.++++|++|+|++| .++.+|.. +..+++|++|
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence 378999999999988888899999999999999999987777788999999999999999 67777764 5668999999
Q ss_pred ccccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHhccccccccCccceeecc
Q 002129 768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIM 845 (962)
Q Consensus 768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 845 (962)
++++|......+..+..+++|++|++++|..+..++.. ..+++|++|++++|.+... ..+..+++|++|+++
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------PNLTPLIKLDELDLS 215 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------CCCTTCSSCCEEECT
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------cccCCCcccCEEECC
Confidence 99999955544557899999999999999888877763 5679999999999987644 347889999999999
Q ss_pred cCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccc-cccccCCCcCeEeccCCCCCccCCCCCCc--cccce
Q 002129 846 NCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLT-SSIVDLQNLTGLVLGNCPKLKYFPEKGLP--SSLLQ 922 (962)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~ 922 (962)
+|. +..++. ..+..+++|++|++++ +.++.++ ..+.++++|++|++++| +++.++...+. ++|+.
T Consensus 216 ~N~--l~~~~~--------~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 216 GNH--LSAIRP--------GSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp TSC--CCEECT--------TTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCE
T ss_pred CCc--cCccCh--------hhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCE
Confidence 973 333332 2346789999999999 5677765 46788999999999995 78888876553 89999
Q ss_pred eeccCCh
Q 002129 923 LSINRCP 929 (962)
Q Consensus 923 L~i~~c~ 929 (962)
|+++++|
T Consensus 284 L~L~~Np 290 (440)
T 3zyj_A 284 IHLHHNP 290 (440)
T ss_dssp EECCSSC
T ss_pred EEcCCCC
Confidence 9998887
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=2.9e-18 Score=194.44 Aligned_cols=235 Identities=11% Similarity=0.026 Sum_probs=162.7
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
++|+.|++++|......|..+..+++|++|++++|.... .+++..+++|++|++++|. ++.++. .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~-l~~l~~------~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNY-VQELLV------GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-EEECTTCTTCCEEECCSSE-EEEEEE------CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-CcccccCCCCCEEEecCCc-CCCCCC------CCCcCEEE
Confidence 578888888877666666677888888888888865433 3336666777777777765 333331 24555555
Q ss_pred ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129 605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE 684 (962)
Q Consensus 605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 684 (962)
+++|. ++.++..
T Consensus 106 L~~N~-l~~~~~~------------------------------------------------------------------- 117 (487)
T 3oja_A 106 AANNN-ISRVSCS------------------------------------------------------------------- 117 (487)
T ss_dssp CCSSC-CCCEEEC-------------------------------------------------------------------
T ss_pred CcCCc-CCCCCcc-------------------------------------------------------------------
Confidence 55532 1111100
Q ss_pred cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCcccc-CCCCccEEEcccCCCcccCCCCCCCccc
Q 002129 685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLH-NLCQLQEISIASCGNLVSSPEGGLPCAK 763 (962)
Q Consensus 685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 763 (962)
.+ ++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+. .+++|++|++++|. ++.+|.. ..+++
T Consensus 118 --~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~-~~l~~ 192 (487)
T 3oja_A 118 --RG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-VVFAK 192 (487)
T ss_dssp --CC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-CCCTT
T ss_pred --cc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccccc-ccCCC
Confidence 01 5788888888888877777888888888888888888777777665 68888888888884 5555443 24678
Q ss_pred ccccccccccccccCccccCCCcccceeecCCCCCCCCCCCC-CCCCccceEeecCchhhhHHHHhccccccccCcccee
Q 002129 764 LAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED-GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQL 842 (962)
Q Consensus 764 L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 842 (962)
|+.|++++|.. ..+|..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|+......+ ..+..++.|+.+
T Consensus 193 L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~---~~~~~l~~L~~l 267 (487)
T 3oja_A 193 LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTV 267 (487)
T ss_dssp CCEEECCSSCC-CEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHH---HHHTTCHHHHHH
T ss_pred CCEEECCCCCC-CCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchH---HHHHhCCCCcEE
Confidence 88889988874 456666888889999999988 45555553 5568889999999887733332 346778888888
Q ss_pred ecc
Q 002129 843 TIM 845 (962)
Q Consensus 843 ~l~ 845 (962)
++.
T Consensus 268 ~~~ 270 (487)
T 3oja_A 268 AKQ 270 (487)
T ss_dssp HHH
T ss_pred ecc
Confidence 886
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=3.5e-17 Score=172.58 Aligned_cols=202 Identities=21% Similarity=0.223 Sum_probs=160.4
Q ss_pred ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccC-CCCCCCccccccc
Q 002129 689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSS-PEGGLPCAKLAML 767 (962)
Q Consensus 689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~-~~~~~~~~~L~~L 767 (962)
|++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|..++.+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 379999999999988877788999999999999999887777888999999999999999767777 5556678999999
Q ss_pred ccccccccccCccccCCCcccceeecCCCCCCCCCCC--CCCCCccceEeecCchhhhHHHHhccccccccCccceeecc
Q 002129 768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEE--DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIM 845 (962)
Q Consensus 768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 845 (962)
++++|...+..|..+..+++|++|++++| .+..++. .+.+++|++|++++|.+..... ..+..+++|++|+++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLH 185 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECC
Confidence 99999976666778899999999999998 4555554 2457889999999987665433 457788899999998
Q ss_pred cCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCccccc-ccccCCCcCeEeccCCC
Q 002129 846 NCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTS-SIVDLQNLTGLVLGNCP 906 (962)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 906 (962)
+|. ...+.. .++..+++|++|++++ +.++.++. .+..+++|++|++.+++
T Consensus 186 ~n~--l~~~~~--------~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 186 QNR--VAHVHP--------HAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SSC--CCEECT--------TTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCc--ccccCH--------hHccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 863 222211 2235678888888888 46777764 46778888888888865
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=7.4e-18 Score=179.94 Aligned_cols=245 Identities=16% Similarity=0.195 Sum_probs=128.8
Q ss_pred cCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCcc-ccCccCC-------CCCCccEEEecCCCCccc
Q 002129 493 DVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLV-KLPQSSL-------SLSSLREIEIYGCRSLVS 564 (962)
Q Consensus 493 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~-~~~~~~~-------~l~~L~~L~l~~~~~l~~ 564 (962)
..++|+.|+++++ .+ .++.. ++..|+.|++++|.... .+|..+. .+++|++|++++|.....
T Consensus 41 ~~~~L~~l~l~~n-~l-~~p~~--------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 41 GGRSLEYLLKRVD-TE-ADLGQ--------FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEECTTHHHHCC-TT-CCCHH--------HHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred cCCCceeEeeccc-cc-ccHHH--------HHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 3455666666653 33 44432 12447777777766522 4444333 567777777777665545
Q ss_pred cCCC---CCCCCCcEEEEcCCCCCCCChhhhhcCCC-----CCccEEEecCCCCCCcccCC--CCCCCCceEEecccCCC
Q 002129 565 FPEV---ALPSKLKKIEISSCDALKSLPEAWMCDTN-----SSLEILEISGCDSLTYIAGV--QLPPSLKRLKICHCDNI 634 (962)
Q Consensus 565 ~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-----~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l 634 (962)
+|.. ..+++|++|++++|. ++.+|..+ ..+ ++|++|++++|. ++.++.. ...++|++|++++|.-.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVS-WATRDAWL--AELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCB-CSSSSSHH--HHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred hHHHHHHhcCCCccEEEccCCC-CcchhHHH--HHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcC
Confidence 5542 557777777777776 44434322 222 677777777743 3333321 22344444444444321
Q ss_pred ccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccccCCCccCccEEEecCCCCch--hh-hhhcc
Q 002129 635 RTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLEVGNLPPSLKLLLVWGCSKLE--SI-AEMLD 711 (962)
Q Consensus 635 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~--~~-~~~~~ 711 (962)
..++. +..+ .++.+ ++|++|++++|.+.+ .+ ...+.
T Consensus 187 ~~~~~-------------------------------------~~~~---~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 187 GERGL-------------------------------------ISAL---CPLKF-PTLQVLALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp HHHHH-------------------------------------HHHS---CTTSC-TTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred cchHH-------------------------------------HHHH---HhccC-CCCCEEECCCCcCcchHHHHHHHHh
Confidence 11100 0000 00111 566666666666552 12 23345
Q ss_pred CCCCcceEeecCCccccccC-ccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccCccccCCCcccce
Q 002129 712 NNTSLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQE 790 (962)
Q Consensus 712 ~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~ 790 (962)
.+++|++|++++|.+.+..| ..+..+++|++|++++| .++.+|.... ++|++|++++|. +..+|. +..+++|++
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGN 300 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEE
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCE
Confidence 66666666666666555443 33445666666666666 4456655444 466666666665 333344 556666666
Q ss_pred eecCCCC
Q 002129 791 LRIGKGV 797 (962)
Q Consensus 791 L~l~~~~ 797 (962)
|++++|+
T Consensus 301 L~L~~N~ 307 (312)
T 1wwl_A 301 LSLKGNP 307 (312)
T ss_dssp EECTTCT
T ss_pred EeccCCC
Confidence 6666653
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=5.2e-18 Score=181.58 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccC
Q 002129 465 PQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEG 537 (962)
Q Consensus 465 ~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~ 537 (962)
..+++|++|++++|.++++.. +..+++|++|++++ +.++.++.. ++|++|++++|..
T Consensus 55 ~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~-n~l~~l~~~----------~~L~~L~l~~n~l 111 (317)
T 3o53_A 55 APFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNN-NYVQELLVG----------PSIETLHAANNNI 111 (317)
T ss_dssp TTCTTCCEEECTTSCCEEEEE-----ETTCTTCCEEECCS-SEEEEEEEC----------TTCCEEECCSSCC
T ss_pred hCCCcCCEEECCCCcCCcchh-----hhhcCCCCEEECcC-CccccccCC----------CCcCEEECCCCcc
Confidence 356677777777776665432 45566666666666 344444432 4555555555443
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=9.7e-18 Score=179.04 Aligned_cols=203 Identities=19% Similarity=0.205 Sum_probs=117.7
Q ss_pred cCCcccEEEecCCCCc-ccCccc--cCCCcCcEEEcCCCcccccChhhhcc-----CCccEEecCCCcchhccchhhhcc
Q 002129 87 KLQSLRVFSLRGYRIL-ELPDSV--GDLRYLRYLNLSGTEIRTLPESVSKL-----YNLHSLLLEDCDRLEKLCADMGNL 158 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~-~lp~~~--~~L~~L~~L~Ls~n~i~~lp~~i~~L-----~~L~~L~L~~~~~~~~lp~~i~~L 158 (962)
++++|++|+|++|.++ .+|..+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++|...+..|..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4666666676666666 456554 66666677777666666666656665 666667666644333333566666
Q ss_pred CCCcEEeccCCccccc--ccccc--cccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccC
Q 002129 159 VKLHHLKNSNTKSLEE--MPVGI--GRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLD 234 (962)
Q Consensus 159 ~~L~~L~l~~n~~~~~--lp~~~--~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~ 234 (962)
++|++|++++|.+.+. +|..+ +.+++|++|++..+.. ..........+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l---------------------------~~~~~~~~~~~~ 225 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM---------------------------ETPSGVCSALAA 225 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC---------------------------CCHHHHHHHHHH
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC---------------------------cchHHHHHHHHh
Confidence 6667776666663332 23333 5666666664322110 011111222234
Q ss_pred CCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCC
Q 002129 235 RKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSV 314 (962)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l 314 (962)
.+++|+.|++++|...... ....+..+++|++|++++|....+|.++. ++|++|++++|.+.+. |.+
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~-p~~ 292 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAA--------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN-PSP 292 (312)
T ss_dssp TTCCCSEEECTTSCCCSSC--------CCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-CCT
T ss_pred cCCCCCEEECCCCcCCccc--------chhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-hhH
Confidence 5667777777766533211 11233445677777777777777776653 6777777777775544 556
Q ss_pred CCCCCCCeEEEcCCC
Q 002129 315 GQLPSLKHLTVRGMS 329 (962)
Q Consensus 315 ~~l~~L~~L~L~~~~ 329 (962)
..+++|++|++++|+
T Consensus 293 ~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 293 DELPQVGNLSLKGNP 307 (312)
T ss_dssp TTSCEEEEEECTTCT
T ss_pred hhCCCCCEEeccCCC
Confidence 677777777777664
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=2.6e-16 Score=164.95 Aligned_cols=200 Identities=17% Similarity=0.134 Sum_probs=123.4
Q ss_pred CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccC-hhhhccC
Q 002129 59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLP-ESVSKLY 135 (962)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp-~~i~~L~ 135 (962)
++|++|.+.++. ...+++..+ ++++|++|++++|.++.++ ..|+.+++|++|+|++|.++.++ ..+++++
T Consensus 28 ~~l~~L~ls~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCC-------CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccEEECCCCc-------ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 357777765543 344444344 7777777777777777664 36777777788888777777665 4577777
Q ss_pred CccEEecCCCcchhccc-hhhhccCCCcEEeccCCccccc--ccccccccccccccceeeecCCCCCCcccccccccccc
Q 002129 136 NLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTKSLEE--MPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRG 212 (962)
Q Consensus 136 ~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~~~~~--lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 212 (962)
+|++|++++|. +..++ ..++.+++|++|++++|. +.. +|..++.+++|++|++..+....
T Consensus 101 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~--------------- 163 (276)
T 2z62_A 101 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS--------------- 163 (276)
T ss_dssp TCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCE---------------
T ss_pred cccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCc---------------
Confidence 77777777754 44443 357777777788777777 443 56667777777777543321100
Q ss_pred eeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcc-eEEEeccCCCCCCccccC
Q 002129 213 TLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLE-QFCIKGYGGMKFPTWLGD 291 (962)
Q Consensus 213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~p~~~~~ 291 (962)
.....+..+.+|+ .+. .|+++++....+|...+
T Consensus 164 ---------------~~~~~~~~l~~L~------------------------------~l~l~L~ls~n~l~~~~~~~~- 197 (276)
T 2z62_A 164 ---------------IYCTDLRVLHQMP------------------------------LLNLSLDLSLNPMNFIQPGAF- 197 (276)
T ss_dssp ---------------ECGGGGHHHHTCT------------------------------TCCEEEECCSSCCCEECTTSS-
T ss_pred ---------------CCHHHhhhhhhcc------------------------------ccceeeecCCCcccccCcccc-
Confidence 0000011111111 111 34555555555555544
Q ss_pred CCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEEcCCC
Q 002129 292 SSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVRGMS 329 (962)
Q Consensus 292 ~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 329 (962)
...+|+.|++++|.+....+ .++.+++|++|++++|+
T Consensus 198 -~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 198 -KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp -CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred -CCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 24578888888888665544 36788889999988875
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=2.7e-16 Score=160.75 Aligned_cols=126 Identities=14% Similarity=0.184 Sum_probs=79.9
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcc---eEeecCC-ccccccCccccCCCCcc-EEEcccCCCcccCCCCCCCcccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLE---KINISGC-GNLQTLPSGLHNLCQLQ-EISIASCGNLVSSPEGGLPCAKL 764 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~L 764 (962)
++|++|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+.++++|+ +|++++| .++.+|...+..++|
T Consensus 105 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKL 181 (239)
T ss_dssp TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEE
T ss_pred CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCC
Confidence 466667776666544 443 66666666 7777777 43333334567777777 7777777 455666655555677
Q ss_pred cccccccccccccCc-cccCCC-cccceeecCCCCCCCCCCCCCCCCccceEeecCch
Q 002129 765 AMLAIYNCKRLEALP-KGLHNL-KSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNM 820 (962)
Q Consensus 765 ~~L~l~~c~~l~~~~-~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 820 (962)
+.|++++|+.+..+| ..+..+ ++|++|++++| .++.+|.. .+++|+.|+++++.
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC-
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCcc
Confidence 788887775344443 456777 78888888776 45555543 45666666666653
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=2.1e-16 Score=161.60 Aligned_cols=200 Identities=19% Similarity=0.176 Sum_probs=138.4
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccC-ccccCCCCccEEEcccCCCcccCCCC-CCCccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLP-SGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAML 767 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L 767 (962)
+++++|++++|.+.+..+..|.++++|++|++++|..++.++ ..+.++++|++|++++|..++.++.. +..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 789999999998877777789999999999999987444444 47888999999999984467777653 4457788888
Q ss_pred ccccccccccCccccCCCcccc---eeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccc-eee
Q 002129 768 AIYNCKRLEALPKGLHNLKSLQ---ELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLR-QLT 843 (962)
Q Consensus 768 ~l~~c~~l~~~~~~~~~l~~L~---~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~ 843 (962)
++++|. +..+|. +..+++|+ +|++++|+.++.++. ..+..+++|+ +|+
T Consensus 111 ~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------------~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 111 GIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV--------------------------NAFQGLCNETLTLK 162 (239)
T ss_dssp EEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT--------------------------TTTTTTBSSEEEEE
T ss_pred eCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCc--------------------------ccccchhcceeEEE
Confidence 888887 445665 66777776 777777755555443 2355666666 666
Q ss_pred cccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCccccc-ccccC-CCcCeEeccCCCCCccCCCCCCccccc
Q 002129 844 IMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTS-SIVDL-QNLTGLVLGNCPKLKYFPEKGLPSSLL 921 (962)
Q Consensus 844 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~sL~ 921 (962)
+++|. ...+|... +.. ++|++|+++++..++.+|. .+.++ ++|++|++++ ++++.+|.. ..++|+
T Consensus 163 l~~n~--l~~i~~~~--------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~ 229 (239)
T 2xwt_C 163 LYNNG--FTSVQGYA--------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLK 229 (239)
T ss_dssp CCSCC--CCEECTTT--------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCS
T ss_pred cCCCC--CcccCHhh--------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCc
Confidence 66652 33444322 122 5777777777545777754 35666 7777888877 457777665 336777
Q ss_pred eeeccCChh
Q 002129 922 QLSINRCPL 930 (962)
Q Consensus 922 ~L~i~~c~~ 930 (962)
.|++.+|+.
T Consensus 230 ~L~l~~~~~ 238 (239)
T 2xwt_C 230 ELIARNTWT 238 (239)
T ss_dssp EEECTTC--
T ss_pred eeeccCccC
Confidence 777777764
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=2.7e-16 Score=165.28 Aligned_cols=198 Identities=19% Similarity=0.168 Sum_probs=120.0
Q ss_pred cCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccChhhhcc
Q 002129 56 YDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPESVSKL 134 (962)
Q Consensus 56 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L 134 (962)
.++++++++.+.++. ...+|+.+. +.+++|+|++|.++.+ |..|..+++|++|+|++|.++.+|.. +.+
T Consensus 7 ~~l~~l~~l~~~~~~-------l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l 76 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-------LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTL 76 (290)
T ss_dssp ECSTTCCEEECTTSC-------CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCC
T ss_pred cccCCccEEECCCCC-------CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCC
Confidence 455566666554432 334454443 4666677777766655 35566677777777777766666543 566
Q ss_pred CCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccc-cccccccccccceeeecCCCCCCcccccccccccce
Q 002129 135 YNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPV-GIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGT 213 (962)
Q Consensus 135 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 213 (962)
++|++|++++ +.+..+|..+..+++|++|++++|+ +..+|. .|+.+++|++|++
T Consensus 77 ~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L----------------------- 131 (290)
T 1p9a_G 77 PVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYL----------------------- 131 (290)
T ss_dssp TTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEEC-----------------------
T ss_pred CcCCEEECCC-CcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEEC-----------------------
Confidence 6677777766 3455666666666677777777666 555543 3555555555533
Q ss_pred eEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCC
Q 002129 214 LCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSS 293 (962)
Q Consensus 214 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 293 (962)
++|..... ....+..+++|+.|++++|....+|...+. .
T Consensus 132 -------------------------------~~N~l~~~---------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~ 170 (290)
T 1p9a_G 132 -------------------------------KGNELKTL---------PPGLLTPTPKLEKLSLANNNLTELPAGLLN-G 170 (290)
T ss_dssp -------------------------------TTSCCCCC---------CTTTTTTCTTCCEEECTTSCCSCCCTTTTT-T
T ss_pred -------------------------------CCCCCCcc---------ChhhcccccCCCEEECCCCcCCccCHHHhc-C
Confidence 22221111 012234456677777777777777765543 5
Q ss_pred CCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129 294 FSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS 329 (962)
Q Consensus 294 l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 329 (962)
+++|+.|++++|.+....+.+...+.|+.|++++|+
T Consensus 171 l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 171 LENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 778888888888766544466677788888887775
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=5.4e-16 Score=161.67 Aligned_cols=175 Identities=25% Similarity=0.344 Sum_probs=101.7
Q ss_pred CcccEEEecCCCCcccCc-cccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccch-hhhccCCCcEEe
Q 002129 89 QSLRVFSLRGYRILELPD-SVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA-DMGNLVKLHHLK 165 (962)
Q Consensus 89 ~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 165 (962)
++|++|++++|.++.+|. .|.++++|++|+|++|.++.+|.. +.++++|++|++++| .+..+|. .+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEE
Confidence 456666666666666543 566666666666666666666544 466666666666664 3444443 356666666666
Q ss_pred ccCCccccccccc-ccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEE
Q 002129 166 NSNTKSLEEMPVG-IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWL 244 (962)
Q Consensus 166 l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 244 (962)
+++|. +..+|.. ++.+++|++|+ +
T Consensus 116 l~~n~-l~~~~~~~~~~l~~L~~L~------------------------------------------------------L 140 (270)
T 2o6q_A 116 LDRNQ-LKSLPPRVFDSLTKLTYLS------------------------------------------------------L 140 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEE------------------------------------------------------C
T ss_pred CCCCc-cCeeCHHHhCcCcCCCEEE------------------------------------------------------C
Confidence 66666 4444432 45555555553 3
Q ss_pred EeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeE
Q 002129 245 RWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHL 323 (962)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 323 (962)
++|...... ...+..+++|+.|+++++....+|...+. .+++|++|++++|.+....+ .+..+++|+.|
T Consensus 141 s~n~l~~~~---------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 141 GYNELQSLP---------KGVFDKLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp CSSCCCCCC---------TTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCcCCccC---------HhHccCCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 322211110 11234455666666666666666654332 46777788887777655444 36677778888
Q ss_pred EEcCCC
Q 002129 324 TVRGMS 329 (962)
Q Consensus 324 ~L~~~~ 329 (962)
++++|+
T Consensus 211 ~l~~N~ 216 (270)
T 2o6q_A 211 QLQENP 216 (270)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 877775
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.3e-16 Score=180.99 Aligned_cols=214 Identities=15% Similarity=0.086 Sum_probs=154.1
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAI 769 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l 769 (962)
++|++|++++|.+.+..|..|..+++|++|+|++|.+.+..| +..+++|++|++++| .++.+|. .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence 578888888888887777888888888888888888766554 788888888888888 5665553 268888888
Q ss_pred ccccccccCccccCCCcccceeecCCCCCCCCC-CC-CCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129 770 YNCKRLEALPKGLHNLKSLQELRIGKGVALPSL-EE-DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC 847 (962)
Q Consensus 770 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 847 (962)
++|...+..+ ..+++|+.|++++|. +..+ +. .+.+++|++|++++|.+....+. .....+++|++|++++|
T Consensus 107 ~~N~l~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 107 ANNNISRVSC---SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CSSCCCCEEE---CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGG---GGGGGTTTCCEEECTTS
T ss_pred cCCcCCCCCc---cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChH---HHhhhCCcccEEecCCC
Confidence 8887544333 246788888888884 4433 32 24468888888888877664442 22236888888888887
Q ss_pred CCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCC-CCccccceeecc
Q 002129 848 DDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEK-GLPSSLLQLSIN 926 (962)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~ 926 (962)
. +..++. ...+++|++|++++ +.++.+|+.+..+++|+.|++++| .+..+|.. +..++|+.|+++
T Consensus 180 ~--l~~~~~----------~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 180 F--IYDVKG----------QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp C--CCEEEC----------CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECT
T ss_pred c--cccccc----------cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcC
Confidence 4 333322 12478888888888 578888877888888888888884 57777764 234788888888
Q ss_pred CChhh
Q 002129 927 RCPLI 931 (962)
Q Consensus 927 ~c~~l 931 (962)
+|+..
T Consensus 246 ~N~l~ 250 (487)
T 3oja_A 246 GNGFH 250 (487)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 87643
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=4.5e-16 Score=163.15 Aligned_cols=202 Identities=18% Similarity=0.101 Sum_probs=149.8
Q ss_pred CccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccc
Q 002129 688 LPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAML 767 (962)
Q Consensus 688 l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L 767 (962)
+|++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 34789999999999887777789999999999999998776666788999999999999995444444556778899999
Q ss_pred ccccccccccCccccCCCcccceeecCCCCCCCC--CCC-CCCCCccceEeecCchhhhHHHHhccccccccCccc----
Q 002129 768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPS--LEE-DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLR---- 840 (962)
Q Consensus 768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~---- 840 (962)
++++|......+..+..+++|++|++++|. +.. +|. ...+++|++|++++|.+..... ..+..+++|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~l~l 180 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----TDLRVLHQMPLLNL 180 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECG----GGGHHHHTCTTCCE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCH----HHhhhhhhccccce
Confidence 999998655555578899999999999984 443 333 2456888888888887665433 3445555555
Q ss_pred eeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccc-cccCCCcCeEeccCCC
Q 002129 841 QLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSS-IVDLQNLTGLVLGNCP 906 (962)
Q Consensus 841 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 906 (962)
.|++++|. ...++... ....+|++|++++ +.++.+|.. +..+++|++|++++++
T Consensus 181 ~L~ls~n~--l~~~~~~~---------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 181 SLDLSLNP--MNFIQPGA---------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEECCSSC--CCEECTTS---------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eeecCCCc--ccccCccc---------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence 78888863 33444322 1234788888888 457777765 4678888888888754
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=2.4e-15 Score=163.29 Aligned_cols=97 Identities=16% Similarity=0.124 Sum_probs=44.1
Q ss_pred hhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCC-c-ccccccccccccccccCccccCC
Q 002129 707 AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLP-C-AKLAMLAIYNCKRLEALPKGLHN 784 (962)
Q Consensus 707 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~-~~L~~L~l~~c~~l~~~~~~~~~ 784 (962)
+.+|..+++|++|++++|.+....+..+....++..|++.++..+..++...+. + ..++.|++++|. ++.+|.....
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~ 175 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFN 175 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSST
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhcc
Confidence 444455555555555554443333333334444555555544444444433211 1 234455555554 3344444334
Q ss_pred CcccceeecCCCCCCCCCCC
Q 002129 785 LKSLQELRIGKGVALPSLEE 804 (962)
Q Consensus 785 l~~L~~L~l~~~~~l~~~~~ 804 (962)
.++|+++++.++..++.+|.
T Consensus 176 ~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp TEEEEEEECTTCTTCCCCCT
T ss_pred ccchhHHhhccCCcccCCCH
Confidence 44555555554444444443
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=1.3e-15 Score=160.01 Aligned_cols=105 Identities=21% Similarity=0.153 Sum_probs=58.7
Q ss_pred CccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCC-CCccccccccc
Q 002129 691 SLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGG-LPCAKLAMLAI 769 (962)
Q Consensus 691 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~~L~~L~l 769 (962)
+|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++| .++.+|... ..+++|+.|++
T Consensus 101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEEC
Confidence 4444444444444444444555555666666655554444444555666666666665 445555443 23556666666
Q ss_pred ccccccccCccccCCCcccceeecCCCC
Q 002129 770 YNCKRLEALPKGLHNLKSLQELRIGKGV 797 (962)
Q Consensus 770 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~ 797 (962)
++|. +..+|..+...++|+.+++++|+
T Consensus 180 ~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 180 QENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCc-CCccChhhcccccCCeEEeCCCC
Confidence 6665 44566666666667777777664
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=4.4e-16 Score=165.49 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129 266 LKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS 329 (962)
Q Consensus 266 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 329 (962)
+..+++|+.|++++|....++. +. .+++|++|++++|.+.+. +++..+++|++|++++|+
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBC-GGGTTCTTCCEEEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCcc-ccccCCCCCCEEEccCCe
Confidence 4455667777777777666665 22 478888888888876543 357788888888888775
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=1.4e-15 Score=165.10 Aligned_cols=222 Identities=20% Similarity=0.154 Sum_probs=172.9
Q ss_pred ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCc-cccCCCCccEEEcccCCCcccCCCC-CCCcccccc
Q 002129 689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPS-GLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAM 766 (962)
Q Consensus 689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~ 766 (962)
|+++++|++++|.+....+.+|.++++|++|+|++|.+.+.+|. .+.++++|+++.+.++..+..++.. +..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 47899999999987766667899999999999999998887764 5688999887666655577777554 556889999
Q ss_pred cccccccccccCccccCCCcccceeecCCCCCCCCCCCC---CCCCccceEeecCchhhhHHHHhccccccccCccceee
Q 002129 767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED---GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLT 843 (962)
Q Consensus 767 L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 843 (962)
|++++|......+..+....++..+++.++..+..++.. +....++.|++++|.+..... .....++|++|+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-----~~f~~~~L~~l~ 183 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-----SAFNGTQLDELN 183 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-----TSSTTEEEEEEE
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh-----hhccccchhHHh
Confidence 999999854444445667778889999888788777654 334678899999998765433 234567899999
Q ss_pred cccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCCCCcccccee
Q 002129 844 IMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGLPSSLLQL 923 (962)
Q Consensus 844 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L 923 (962)
+.++. ....+|.+. +..+++|++|++++ +.++.+|. ..|.+|++|.+.+|++++.+|.-.-.++|+.+
T Consensus 184 l~~~n-~l~~i~~~~--------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l 251 (350)
T 4ay9_X 184 LSDNN-NLEELPNDV--------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEA 251 (350)
T ss_dssp CTTCT-TCCCCCTTT--------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred hccCC-cccCCCHHH--------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhC
Confidence 98743 666676543 46889999999999 58999997 56889999999999999999974444788888
Q ss_pred eccC
Q 002129 924 SINR 927 (962)
Q Consensus 924 ~i~~ 927 (962)
++.+
T Consensus 252 ~l~~ 255 (350)
T 4ay9_X 252 SLTY 255 (350)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 8754
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=160.66 Aligned_cols=200 Identities=14% Similarity=0.149 Sum_probs=129.9
Q ss_pred hhcceeecccccCccccCccC--CCCCCccEEEecCCCCccccCC-----CCCCCCCcEEEEcCCCCCCCChhhhhcCCC
Q 002129 525 ELLEYLRLSYCEGLVKLPQSS--LSLSSLREIEIYGCRSLVSFPE-----VALPSKLKKIEISSCDALKSLPEAWMCDTN 597 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~--~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 597 (962)
++|++|++++|...+..|..+ ..+++|++|++++|......+. ...+++|++|++++|.. ..++...+ ..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~-~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQV-RAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSC-CCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHh-ccC
Confidence 668889998888777777766 7788888888888765443321 22467777777777773 44443332 566
Q ss_pred CCccEEEecCCCCCCc--ccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCC
Q 002129 598 SSLEILEISGCDSLTY--IAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNE 675 (962)
Q Consensus 598 ~~L~~L~l~~c~~l~~--~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 675 (962)
++|++|++++|..... ++....
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~-------------------------------------------------------- 192 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALC-------------------------------------------------------- 192 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSC--------------------------------------------------------
T ss_pred CCCCEEECCCCCCccchhhhHHHh--------------------------------------------------------
Confidence 7777777777532211 110000
Q ss_pred ccccccccccCCCccCccEEEecCCCCchh--hhh-hccCCCCcceEeecCCccccccCccccCC---CCccEEEcccCC
Q 002129 676 LPATLESLEVGNLPPSLKLLLVWGCSKLES--IAE-MLDNNTSLEKINISGCGNLQTLPSGLHNL---CQLQEISIASCG 749 (962)
Q Consensus 676 ~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~--~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~L~~~~ 749 (962)
.+.+ ++|++|++++|..... .+. .++.+++|++|++++|.+.+..|..+..+ ++|++|++++|
T Consensus 193 ---------~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N- 261 (310)
T 4glp_A 193 ---------PHKF-PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA- 261 (310)
T ss_dssp ---------TTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-
T ss_pred ---------hhcC-CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-
Confidence 0011 5677777777766422 222 35678888888888888777667666665 68888888888
Q ss_pred CcccCCCCCCCcccccccccccccccccCccccCCCcccceeecCCCC
Q 002129 750 NLVSSPEGGLPCAKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGV 797 (962)
Q Consensus 750 ~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~ 797 (962)
.++.+|.... ++|+.|++++|.. ..+|. +..+++|+.|++++|+
T Consensus 262 ~l~~lp~~~~--~~L~~L~Ls~N~l-~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 262 GLEQVPKGLP--AKLRVLDLSSNRL-NRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCSCCSCCC--SCCSCEECCSCCC-CSCCC-TTSCCCCSCEECSSTT
T ss_pred CCCchhhhhc--CCCCEEECCCCcC-CCCch-hhhCCCccEEECcCCC
Confidence 5667776554 5888888888873 34443 5677777888877774
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=4.7e-15 Score=154.67 Aligned_cols=207 Identities=14% Similarity=0.140 Sum_probs=136.0
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
++|+.|++++|.. +.++ .+..+++|++|++++|. ++.++.+..+++|++|++++|. ++.++...+ ..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i-~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQ-LQSLPNGVF-DKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCC-CCCT-TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCEEE
T ss_pred cceeeeeeCCCCc-cccc-ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCc-cCccChhHh-cCCcCCCEEE
Confidence 5566666666543 2333 35566777777777654 4445555666777777777765 444444333 5667777777
Q ss_pred ecCCCCCCcccCC--CCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccc
Q 002129 605 ISGCDSLTYIAGV--QLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLES 682 (962)
Q Consensus 605 l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 682 (962)
+++|. ++.++.. ..+++|+.|++++| .++.++.. .+
T Consensus 116 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------------------------------------~~-- 153 (272)
T 3rfs_A 116 LVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKG--------------------------------------VF-- 153 (272)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--------------------------------------TT--
T ss_pred CCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHH--------------------------------------Hh--
Confidence 77743 4444332 33456666666655 22222210 00
Q ss_pred cccCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCcc
Q 002129 683 LEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCA 762 (962)
Q Consensus 683 l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 762 (962)
+.+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+... .++
T Consensus 154 ---~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~ 222 (272)
T 3rfs_A 154 ---DKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCP 222 (272)
T ss_dssp ---TTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTT
T ss_pred ---ccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCc
Confidence 111 688999999998877777778889999999999988887777778889999999999985432 345
Q ss_pred cccccccccccccccCccccCCCcccc
Q 002129 763 KLAMLAIYNCKRLEALPKGLHNLKSLQ 789 (962)
Q Consensus 763 ~L~~L~l~~c~~l~~~~~~~~~l~~L~ 789 (962)
+|+.|+++.|...+.+|..++.++...
T Consensus 223 ~l~~l~~~~n~~~g~ip~~~~~~~~~~ 249 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNSAGSVAPDS 249 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCTTSCBCGGG
T ss_pred HHHHHHHHHHhCCCcccCcccccCCCC
Confidence 789999999988888888877766543
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=1.9e-15 Score=157.62 Aligned_cols=220 Identities=16% Similarity=0.097 Sum_probs=151.5
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
..+..+++.++...... ....+++|++|++++| .++.++.+..+++|++|++++|. +..++ .+ ..+++|++|+
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~-~l--~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNK-LHDIS-AL--KELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSC-CCCCG-GG--TTCTTCCEEE
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCC-CcccccccccCCCCcEEECCCCC-CCCch-hh--cCCCCCCEEE
Confidence 55566666665433322 2456889999999986 46667777888999999999987 55554 22 6778888888
Q ss_pred ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129 605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE 684 (962)
Q Consensus 605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 684 (962)
+++| .++.++...+
T Consensus 92 L~~n-~l~~~~~~~~----------------------------------------------------------------- 105 (272)
T 3rfs_A 92 LTGN-QLQSLPNGVF----------------------------------------------------------------- 105 (272)
T ss_dssp CTTS-CCCCCCTTTT-----------------------------------------------------------------
T ss_pred CCCC-ccCccChhHh-----------------------------------------------------------------
Confidence 8885 3333222100
Q ss_pred cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCccc
Q 002129 685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAK 763 (962)
Q Consensus 685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~ 763 (962)
+.+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++| .++.++.. +..+++
T Consensus 106 -~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 106 -DKL-TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQ 182 (272)
T ss_dssp -TTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred -cCC-cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCcc
Confidence 001 57777888887777666667788888888888888766555566778888888888888 45555544 355778
Q ss_pred ccccccccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHH
Q 002129 764 LAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSM 826 (962)
Q Consensus 764 L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 826 (962)
|+.|++++|...+..+..+..+++|++|++++|+.. +.++.|+.++++.|......+
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence 888888888865555556788888888888888543 234567777777776655444
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=7.3e-15 Score=153.12 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=99.5
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCcccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAMLA 768 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L~ 768 (962)
+++++|++++|.+.+..+..|.++++|++|++++|.+....+..+.++++|++|++++| .+..+|.. +..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEE
Confidence 67888888888877666667888888888888887766544455677888888888888 45555544 34577888888
Q ss_pred cccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHhccccccccCccceeeccc
Q 002129 769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMN 846 (962)
Q Consensus 769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 846 (962)
+++|......+..+..+++|++|++++| .+..++.. ..+++|++|++++|.+..... ..+..+++|++|++++
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPE----GAFDKLTELKTLKLDN 190 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeCh----hHhccCCCcCEEECCC
Confidence 8888755554556778888888888887 45555442 334555555555554433222 2344444555555544
Q ss_pred C
Q 002129 847 C 847 (962)
Q Consensus 847 ~ 847 (962)
|
T Consensus 191 N 191 (270)
T 2o6q_A 191 N 191 (270)
T ss_dssp S
T ss_pred C
Confidence 3
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=2.7e-15 Score=159.38 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=131.6
Q ss_pred cCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccC
Q 002129 56 YDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLY 135 (962)
Q Consensus 56 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~ 135 (962)
.++++|++|.+.++. ...+ +.+..+++|++|++++|.++.++. +..+++|++|+|++|.++.+| .++.++
T Consensus 38 ~~l~~L~~L~l~~~~-------i~~l-~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~ 107 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-------VTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQ 107 (308)
T ss_dssp HHHHTCCEEECTTSC-------CCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCT
T ss_pred HHcCCcCEEEeeCCC-------ccCc-hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCC
Confidence 456677777765542 2223 344577888888888888777766 777888888888888877775 477788
Q ss_pred CccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeE
Q 002129 136 NLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLC 215 (962)
Q Consensus 136 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~ 215 (962)
+|++|++++| .+..+|. ++.+++|++|++++|. +..++. ++.+++|+.|++..+...
T Consensus 108 ~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~------------------- 164 (308)
T 1h6u_A 108 SIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVS------------------- 164 (308)
T ss_dssp TCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCC-------------------
T ss_pred CCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCC-------------------
Confidence 8888888874 4555553 7778888888888877 555554 677777777754322110
Q ss_pred EecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCC
Q 002129 216 ISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFS 295 (962)
Q Consensus 216 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~ 295 (962)
. ... +..+++|+.|++++|..... ..+..+++|++|++++|....++. +. .++
T Consensus 165 -----------~-~~~-l~~l~~L~~L~l~~n~l~~~-----------~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~ 217 (308)
T 1h6u_A 165 -----------D-LTP-LANLSKLTTLKADDNKISDI-----------SPLASLPNLIEVHLKNNQISDVSP-LA--NTS 217 (308)
T ss_dssp -----------C-CGG-GTTCTTCCEEECCSSCCCCC-----------GGGGGCTTCCEEECTTSCCCBCGG-GT--TCT
T ss_pred -----------C-Chh-hcCCCCCCEEECCCCccCcC-----------hhhcCCCCCCEEEccCCccCcccc-cc--CCC
Confidence 0 001 55667778888877654322 125567889999999988887774 33 689
Q ss_pred CceEEEEecCCCCC
Q 002129 296 KLVTLKFKNCDMCT 309 (962)
Q Consensus 296 ~L~~L~L~~~~~~~ 309 (962)
+|+.|++++|.+..
T Consensus 218 ~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 218 NLFIVTLTNQTITN 231 (308)
T ss_dssp TCCEEEEEEEEEEC
T ss_pred CCCEEEccCCeeec
Confidence 99999999998543
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.6e-16 Score=172.31 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=79.7
Q ss_pred cC--CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccc--cChhhhccCCccEEecCCCcchhccchhhhccCCCc
Q 002129 87 KL--QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRT--LPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLH 162 (962)
Q Consensus 87 ~l--~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 162 (962)
.+ +++++|++++|.+...+..+..+++|++|++++|.++. +|..+..+++|++|++++|......|..++.+++|+
T Consensus 66 ~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 66 RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp HHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred hhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 55 78888888888888776667788888888888888873 677788888888888888765566777888888888
Q ss_pred EEeccCCcccc--cccccccccccccccce
Q 002129 163 HLKNSNTKSLE--EMPVGIGRLTCLQTLCS 190 (962)
Q Consensus 163 ~L~l~~n~~~~--~lp~~~~~L~~L~~L~~ 190 (962)
+|++++|..+. .+|..++.+++|++|++
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNL 175 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence 88888883244 25555666777776644
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=6.9e-15 Score=156.80 Aligned_cols=227 Identities=12% Similarity=0.064 Sum_probs=145.0
Q ss_pred CccEEEecCCCCchhh-hh--hccCCCCcceEeecCCccccccCccc--cCCCCccEEEcccCCCcccCC----CCCCCc
Q 002129 691 SLKLLLVWGCSKLESI-AE--MLDNNTSLEKINISGCGNLQTLPSGL--HNLCQLQEISIASCGNLVSSP----EGGLPC 761 (962)
Q Consensus 691 ~L~~L~l~~~~~~~~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~L~~~~~l~~~~----~~~~~~ 761 (962)
.++.+.+.++...... .. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|......+ .....+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4666677666654321 11 12234567777777777777666666 677777777777774433332 112346
Q ss_pred ccccccccccccccccCccccCCCcccceeecCCCCCCCC--CC---CCCCCCccceEeecCchhhhHHHHhcccccccc
Q 002129 762 AKLAMLAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPS--LE---EDGLPTNLHVLLINGNMEIWKSMIERGRGFHRF 836 (962)
Q Consensus 762 ~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~--~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 836 (962)
++|++|++++|......+..++.+++|++|++++|..... ++ ..+.+++|++|++++|.+....... ...+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC-AALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-HHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH-HHHHhcC
Confidence 6777777777776555556777778888888887753321 11 1134577888888887764322110 0234678
Q ss_pred CccceeecccCCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCcccccccccCCCcCeEeccCCCCCccCCCCCC
Q 002129 837 SSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTSSIVDLQNLTGLVLGNCPKLKYFPEKGL 916 (962)
Q Consensus 837 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 916 (962)
++|++|++++|.. ....|.... .+..+++|++|++++ +.++.+|..+. ++|++|++++| +++.+|....
T Consensus 224 ~~L~~L~Ls~N~l-~~~~p~~~~------~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~ 292 (310)
T 4glp_A 224 VQPHSLDLSHNSL-RATVNPSAP------RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDE 292 (310)
T ss_dssp CCCSSEECTTSCC-CCCCCSCCS------SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTS
T ss_pred CCCCEEECCCCCC-CccchhhHH------hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhh
Confidence 9999999999742 222243221 122347999999998 57888987653 79999999995 5777765444
Q ss_pred ccccceeeccCCh
Q 002129 917 PSSLLQLSINRCP 929 (962)
Q Consensus 917 ~~sL~~L~i~~c~ 929 (962)
.++|+.|++++++
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 5899999998886
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=3e-14 Score=146.62 Aligned_cols=173 Identities=20% Similarity=0.216 Sum_probs=101.8
Q ss_pred cccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhhccCCCcEEeccC
Q 002129 90 SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSN 168 (962)
Q Consensus 90 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 168 (962)
..++++++++.++.+|..+. .+|++|+|++|.++.++. .|+++++|++|++++|...+..|..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45566666666666666554 466777777777666543 466677777777776433333334466677777777777
Q ss_pred Cccccccccc-ccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEee
Q 002129 169 TKSLEEMPVG-IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWT 247 (962)
Q Consensus 169 n~~~~~lp~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 247 (962)
|. +..+|.. ++.+++|++|++..+
T Consensus 93 n~-l~~~~~~~~~~l~~L~~L~L~~N------------------------------------------------------ 117 (251)
T 3m19_A 93 NQ-LASLPLGVFDHLTQLDKLYLGGN------------------------------------------------------ 117 (251)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSS------------------------------------------------------
T ss_pred Cc-ccccChhHhcccCCCCEEEcCCC------------------------------------------------------
Confidence 66 4444432 455555555533211
Q ss_pred cCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCC-CCCCCCCCCeEEEc
Q 002129 248 LYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALP-SVGQLPSLKHLTVR 326 (962)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 326 (962)
..... ....+..+++|+.|++++|....+|..... .+++|++|++++|.+....+ .+..+++|++|+++
T Consensus 118 ~l~~~---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 118 QLKSL---------PSGVFDRLTKLKELRLNTNQLQSIPAGAFD-KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp CCCCC---------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCCc---------ChhHhccCCcccEEECcCCcCCccCHHHcC-cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 10000 001122344555555666666666653222 57888888888888766555 57788888888888
Q ss_pred CCC
Q 002129 327 GMS 329 (962)
Q Consensus 327 ~~~ 329 (962)
+|+
T Consensus 188 ~N~ 190 (251)
T 3m19_A 188 GNQ 190 (251)
T ss_dssp SCC
T ss_pred CCc
Confidence 875
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=2.3e-16 Score=170.92 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=43.4
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccc-cC-CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVS-FP-EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEI 602 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~-~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 602 (962)
++++.|++++|......+. +..+++|++|++++|..... ++ .+..+++|++|++++|......+..+ ..+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCCE
Confidence 5677777776654444333 44566666666666542211 22 23445666666666665222223222 34556666
Q ss_pred EEecCCCCC
Q 002129 603 LEISGCDSL 611 (962)
Q Consensus 603 L~l~~c~~l 611 (962)
|++++|..+
T Consensus 147 L~L~~~~~l 155 (336)
T 2ast_B 147 LNLSGCSGF 155 (336)
T ss_dssp EECTTCBSC
T ss_pred EECCCCCCC
Confidence 666655433
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=3e-14 Score=149.78 Aligned_cols=168 Identities=19% Similarity=0.271 Sum_probs=108.0
Q ss_pred cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEec
Q 002129 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN 166 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 166 (962)
.+++|++|++++|.++.+| .++.+++|++|++++|.++.++. ++.+++|++|++++| .+..+| .++.+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEEC
Confidence 6677788888888777774 47777888888888888877766 777888888888874 455554 4777788888888
Q ss_pred cCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEe
Q 002129 167 SNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRW 246 (962)
Q Consensus 167 ~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (962)
++|. +..+ ..++.+++|+.|++..+
T Consensus 120 ~~n~-i~~~-~~l~~l~~L~~L~l~~n----------------------------------------------------- 144 (291)
T 1h6t_A 120 EHNG-ISDI-NGLVHLPQLESLYLGNN----------------------------------------------------- 144 (291)
T ss_dssp TTSC-CCCC-GGGGGCTTCCEEECCSS-----------------------------------------------------
T ss_pred CCCc-CCCC-hhhcCCCCCCEEEccCC-----------------------------------------------------
Confidence 8777 5554 24555556655543221
Q ss_pred ecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEc
Q 002129 247 TLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVR 326 (962)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 326 (962)
.... +..+..+++|+.|++++|....++. +. .+++|+.|++++|.+.. ++.+..+++|+.|+++
T Consensus 145 -~l~~-----------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 145 -KITD-----------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLELF 208 (291)
T ss_dssp -CCCC-----------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEE
T ss_pred -cCCc-----------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEEECc
Confidence 1000 0112233445555555555555544 22 47778888888776543 4567778888888887
Q ss_pred CCC
Q 002129 327 GMS 329 (962)
Q Consensus 327 ~~~ 329 (962)
+|+
T Consensus 209 ~n~ 211 (291)
T 1h6t_A 209 SQE 211 (291)
T ss_dssp EEE
T ss_pred CCc
Confidence 774
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=1.4e-15 Score=167.96 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=57.2
Q ss_pred cCCcccEEEecCCCCcc----cCccc-------cCCCcCcEEEcCCCcccc-----cChhhhccCCccEEecCCCcchhc
Q 002129 87 KLQSLRVFSLRGYRILE----LPDSV-------GDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLLEDCDRLEK 150 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~----lp~~~-------~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~~ 150 (962)
.+++|++|+|++|.+.. +|..+ ..+++|++|+|++|.++. +|..+..+++|++|++++|.....
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 56666777776654432 23332 566667777777666664 555666666777777766543222
Q ss_pred ----cchhhhcc---------CCCcEEeccCCccc-cccc---ccccccccccccce
Q 002129 151 ----LCADMGNL---------VKLHHLKNSNTKSL-EEMP---VGIGRLTCLQTLCS 190 (962)
Q Consensus 151 ----lp~~i~~L---------~~L~~L~l~~n~~~-~~lp---~~~~~L~~L~~L~~ 190 (962)
++..+..+ ++|++|++++|.+. ..+| ..+..+++|++|++
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 194 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEEC
Confidence 22233333 66677777666622 2333 23445555555543
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=2e-13 Score=134.55 Aligned_cols=146 Identities=13% Similarity=0.176 Sum_probs=118.4
Q ss_pred CceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcc-cCccccCCC
Q 002129 34 RYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILE-LPDSVGDLR 112 (962)
Q Consensus 34 ~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~~~~L~ 112 (962)
+.++++++.++.+..+ +.+..+++|++|.+.++. ...++.+..+++|++|++++|.++. .|..|+.++
T Consensus 44 ~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~l~~n~--------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLANINVTDL---TGIEYAHNIKDLTINNIH--------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HTCCEEEEESSCCSCC---TTGGGCTTCSEEEEESCC--------CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred CCccEEeccCCCccCh---HHHhcCCCCCEEEccCCC--------CCcchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 5788999998877643 357788899999887653 2334455689999999999999985 678899999
Q ss_pred cCcEEEcCCCcccc-cChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccccccccccccccee
Q 002129 113 YLRYLNLSGTEIRT-LPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSF 191 (962)
Q Consensus 113 ~L~~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~ 191 (962)
+|++|++++|.++. .|..++.+++|++|++++|..++.+| .++.+++|++|++++|. +..++ .+..+++|++|++.
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEEC
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEee
Confidence 99999999999985 57779999999999999976577787 78999999999999998 67776 78888888888765
Q ss_pred ee
Q 002129 192 VV 193 (962)
Q Consensus 192 ~~ 193 (962)
.+
T Consensus 190 ~N 191 (197)
T 4ezg_A 190 SQ 191 (197)
T ss_dssp BC
T ss_pred Cc
Confidence 43
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=1.6e-13 Score=141.22 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=107.9
Q ss_pred ccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCccccccc
Q 002129 689 PPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAML 767 (962)
Q Consensus 689 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L 767 (962)
|++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++| .++.+|.. +..+++|++|
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEE
Confidence 368899999999888887888889999999999998887777777888899999999988 45555543 4567888888
Q ss_pred ccccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHhccccccccCccceeecc
Q 002129 768 AIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIM 845 (962)
Q Consensus 768 ~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 845 (962)
++++|......+..+..+++|++|++++| .+..++.. +.+++|++|++++|.+..... ..+..+++|+.|+++
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH----GAFDRLGKLQTITLF 187 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCH----HHHhCCCCCCEEEee
Confidence 88888744333345678888888888888 55555542 344566666666665443322 234555555555555
Q ss_pred cC
Q 002129 846 NC 847 (962)
Q Consensus 846 ~~ 847 (962)
+|
T Consensus 188 ~N 189 (251)
T 3m19_A 188 GN 189 (251)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=8.6e-15 Score=159.78 Aligned_cols=107 Identities=10% Similarity=-0.004 Sum_probs=58.5
Q ss_pred cCccEEEecCCCCchhhhh----hccCC-CCcceEeecCCccccc----cCccccC-CCCccEEEcccCCCcccCCC---
Q 002129 690 PSLKLLLVWGCSKLESIAE----MLDNN-TSLEKINISGCGNLQT----LPSGLHN-LCQLQEISIASCGNLVSSPE--- 756 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~----~~~~l~~-l~~L~~L~L~~~~~l~~~~~--- 756 (962)
++|++|++++|.+.+..+. .+..+ ++|++|++++|.+... ++..+.. .++|++|++++| .++..+.
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l 245 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENL 245 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHH
Confidence 3667777777766554432 33344 4777777777665442 3334444 346777777776 3333221
Q ss_pred --CCCCcccccccccccccc-------cccCccccCCCcccceeecCCCC
Q 002129 757 --GGLPCAKLAMLAIYNCKR-------LEALPKGLHNLKSLQELRIGKGV 797 (962)
Q Consensus 757 --~~~~~~~L~~L~l~~c~~-------l~~~~~~~~~l~~L~~L~l~~~~ 797 (962)
....+++|+.|++++|.. ...++..+..+++|+.|++++|+
T Consensus 246 ~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 123345666666666651 12233345566666666666663
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=5e-13 Score=133.13 Aligned_cols=81 Identities=22% Similarity=0.360 Sum_probs=44.7
Q ss_pred cEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccch-hhhccCCCcEEeccCC
Q 002129 92 RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA-DMGNLVKLHHLKNSNT 169 (962)
Q Consensus 92 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~n 169 (962)
+.++++++.++.+|..+ ..+|++|++++|.++.+|.. ++.+++|++|++++| .+..+|. .+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 34555555666555444 23566666666666655543 556666666666663 3334443 3456666666666666
Q ss_pred ccccccc
Q 002129 170 KSLEEMP 176 (962)
Q Consensus 170 ~~~~~lp 176 (962)
. +..+|
T Consensus 87 ~-l~~~~ 92 (208)
T 2o6s_A 87 Q-LQSLP 92 (208)
T ss_dssp C-CCCCC
T ss_pred c-CCccC
Confidence 5 44443
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=1.9e-13 Score=137.02 Aligned_cols=129 Identities=26% Similarity=0.298 Sum_probs=106.4
Q ss_pred CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccChh-hhccC
Q 002129 59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VSKLY 135 (962)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~ 135 (962)
++++.|.+.++. ...+++..+ .+++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. |..++
T Consensus 32 ~~l~~L~l~~n~-------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNT-------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSC-------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCEEECCCCc-------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 578999887654 456666666 899999999999999977 78899999999999999999999866 78999
Q ss_pred CccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccc-ccccccccccceeeecC
Q 002129 136 NLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFVVGK 195 (962)
Q Consensus 136 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~~ 195 (962)
+|++|++++|......|..|..+++|++|++++|. +..+|.+ +..+++|++|++..+..
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99999999965444446779999999999999998 6777664 88899999987755443
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=8.2e-13 Score=132.33 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=64.8
Q ss_pred cEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCc
Q 002129 92 RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTK 170 (962)
Q Consensus 92 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~ 170 (962)
+.+++++++++.+|..+. .+|++|+|++|.|+.+|. .|..+++|++|++++|......|..|..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567777777777777655 577888888888877765 47778888888888754444446677888888888888877
Q ss_pred cccccccc-cccccccccc
Q 002129 171 SLEEMPVG-IGRLTCLQTL 188 (962)
Q Consensus 171 ~~~~lp~~-~~~L~~L~~L 188 (962)
+..+|.+ ++.+++|++|
T Consensus 92 -l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp -CCCCCTTTTTTCTTCCEE
T ss_pred -CCccCHhHccCCCCCCEE
Confidence 5556544 3444444444
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=1.1e-14 Score=160.64 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=49.5
Q ss_pred ccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCC-----CCccccCCCCCCceEEEEecCC
Q 002129 232 QLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMK-----FPTWLGDSSFSKLVTLKFKNCD 306 (962)
Q Consensus 232 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~ 306 (962)
.+..+++|+.|++++|..+.. ........+..+++|++|++++|.... +|.++....+++|++|+|++|.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~-----g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHL-----GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHH-----HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HhhcCCCccEEECcCCCCCcH-----HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 344555555565555532100 001122344455666666666665443 2344321236777777777777
Q ss_pred CCC----CCC-CC-CCCCCCCeEEEcCCC
Q 002129 307 MCT----ALP-SV-GQLPSLKHLTVRGMS 329 (962)
Q Consensus 307 ~~~----~l~-~l-~~l~~L~~L~L~~~~ 329 (962)
+.. .++ .+ ..+++|++|++++|.
T Consensus 286 i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 286 IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 655 233 33 456778888887775
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=1.8e-13 Score=157.87 Aligned_cols=168 Identities=19% Similarity=0.276 Sum_probs=113.9
Q ss_pred cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEec
Q 002129 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKN 166 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 166 (962)
.+++|+.|++++|.+..+| .++.+++|++|+|++|.++.+|. +..+++|+.|+|++| .+..+| .++.+++|++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence 6778888888888888775 57888888888888888887766 788888888888885 455555 6788888888888
Q ss_pred cCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEe
Q 002129 167 SNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRW 246 (962)
Q Consensus 167 ~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (962)
++|. +..+| .++.+++|+.|++..+
T Consensus 117 s~N~-l~~l~-~l~~l~~L~~L~Ls~N----------------------------------------------------- 141 (605)
T 1m9s_A 117 EHNG-ISDIN-GLVHLPQLESLYLGNN----------------------------------------------------- 141 (605)
T ss_dssp TTSC-CCCCG-GGGGCTTCSEEECCSS-----------------------------------------------------
T ss_pred cCCC-CCCCc-cccCCCccCEEECCCC-----------------------------------------------------
Confidence 8887 55543 3666666666643221
Q ss_pred ecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEc
Q 002129 247 TLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVR 326 (962)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 326 (962)
.... +..+..+++|+.|++++|....++. +. .+++|+.|+|++|.+.. ++.+..+++|+.|+|+
T Consensus 142 -~l~~-----------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 142 -KITD-----------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLELF 205 (605)
T ss_dssp -CCCC-----------CGGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECC
T ss_pred -ccCC-----------chhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCCCCC-ChHHccCCCCCEEEcc
Confidence 1000 0122334455555555555555544 32 57788888888887544 4667788888888888
Q ss_pred CCC
Q 002129 327 GMS 329 (962)
Q Consensus 327 ~~~ 329 (962)
+|+
T Consensus 206 ~N~ 208 (605)
T 1m9s_A 206 SQE 208 (605)
T ss_dssp SEE
T ss_pred CCc
Confidence 775
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=4.5e-13 Score=152.59 Aligned_cols=188 Identities=23% Similarity=0.294 Sum_probs=116.7
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
.+|+.|++++|.. +.+|..+ +++|++|++++| .++.+| ..+++|++|++++|. ++.+|. + .. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l--~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-L--PA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCC-SCCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-C--CT--TCCEEE
T ss_pred CCccEEEeCCCCC-CccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-h--hc--CCCEEE
Confidence 4788888888764 4477655 378889998886 455677 567888888888886 555766 3 22 788888
Q ss_pred ecCCCCCCcccCCCCCCCCceEEecccCCCccccccccccccCCCCccccccceeEeeCCCCccccccCCCccccccccc
Q 002129 605 ISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEEGIQCSSGRRYTSSLLEHLEIYSCPSLTCIFSKNELPATLESLE 684 (962)
Q Consensus 605 l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 684 (962)
+++| .++.+|. .+++|+.|++++|. ++.++.
T Consensus 127 Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~--------------------------------------------- 157 (571)
T 3cvr_A 127 VDNN-QLTMLPE--LPALLEYINADNNQ-LTMLPE--------------------------------------------- 157 (571)
T ss_dssp CCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCC---------------------------------------------
T ss_pred CCCC-cCCCCCC--cCccccEEeCCCCc-cCcCCC---------------------------------------------
Confidence 8884 4555655 45666666666653 222220
Q ss_pred cCCCccCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCc-------cEEEcccCCCcccCCCC
Q 002129 685 VGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQL-------QEISIASCGNLVSSPEG 757 (962)
Q Consensus 685 ~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-------~~L~L~~~~~l~~~~~~ 757 (962)
.+++|++|++++|.+.+ +|. +. ++|+.|++++|.+. .+|. +.. +| +.|++++| .++.+|..
T Consensus 158 ---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~ 225 (571)
T 3cvr_A 158 ---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCREN-RITHIPEN 225 (571)
T ss_dssp ---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSS-CCCCCCGG
T ss_pred ---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCC-cceecCHH
Confidence 01566777777766544 444 43 66777777666544 4554 433 45 66666666 45566665
Q ss_pred CCCcccccccccccccccccCccccCCC
Q 002129 758 GLPCAKLAMLAIYNCKRLEALPKGLHNL 785 (962)
Q Consensus 758 ~~~~~~L~~L~l~~c~~l~~~~~~~~~l 785 (962)
.+.+++|+.|++++|+..+.+|..+..+
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 5556666666666666555555544443
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=9.4e-13 Score=138.33 Aligned_cols=176 Identities=20% Similarity=0.275 Sum_probs=103.2
Q ss_pred ccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhcc
Q 002129 55 LYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKL 134 (962)
Q Consensus 55 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L 134 (962)
...+++|+.|.+.++. ...+ +.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+|. ++.+
T Consensus 42 ~~~l~~L~~L~l~~~~-------i~~~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l 111 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-------IKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDL 111 (291)
T ss_dssp HHHHHTCCEEECTTSC-------CCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred hhhcCcccEEEccCCC-------cccC-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccC
Confidence 3455666666665432 1222 334466777777777777776655 6777777777777777766654 6777
Q ss_pred CCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeeecCCCCCCccccccccccccee
Q 002129 135 YNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTL 214 (962)
Q Consensus 135 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 214 (962)
++|++|++++| .+..+ ..++.+++|++|++++|. +..+ ..++.+++|++|++..+...
T Consensus 112 ~~L~~L~L~~n-~i~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~------------------ 169 (291)
T 1h6t_A 112 KKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS------------------ 169 (291)
T ss_dssp TTCCEEECTTS-CCCCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCC------------------
T ss_pred CCCCEEECCCC-cCCCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccc------------------
Confidence 77777777774 34444 356677777777777776 5554 34666666666644322110
Q ss_pred EEecCCCCcchhhhhhhccCCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCc
Q 002129 215 CISNLENVKHIVDAEDAQLDRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPT 287 (962)
Q Consensus 215 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~ 287 (962)
... . +..+++|+.|++++|.... +..+..+++|+.|++++|.....|.
T Consensus 170 ------------~~~-~-l~~l~~L~~L~L~~N~i~~-----------l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 170 ------------DIV-P-LAGLTKLQNLYLSKNHISD-----------LRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp ------------CCG-G-GTTCTTCCEEECCSSCCCB-----------CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred ------------cch-h-hcCCCccCEEECCCCcCCC-----------ChhhccCCCCCEEECcCCcccCCcc
Confidence 000 0 4455666666666664322 1235556777777777776555443
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=3.1e-13 Score=133.13 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=111.6
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAI 769 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l 769 (962)
++|++|++++|.+. .++ .+..+++|++|++++|. ...+ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 68999999998766 445 58889999999999984 3333 46888999999999998555556777777889999999
Q ss_pred ccccccccCccccCCCcccceeecCCCCCCCCCCCCCCCCccceEeecCchhhhHHHHhccccccccCccceeecccC
Q 002129 770 YNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEEDGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNC 847 (962)
Q Consensus 770 ~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 847 (962)
++|......|..+..+++|++|++++|..++.++....+++|++|++++|.+... ..+..+++|++|++++|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~------~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY------RGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC------TTGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh------HHhccCCCCCEEEeeCc
Confidence 9998777777888899999999999997677776555566677777776665442 13455666666666664
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=6.8e-14 Score=144.53 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=35.4
Q ss_pred CCcceEEEeccCCCCCCccccCCCCCCceEEEEecCCCCCCCCCCCCCCCCCeEEEcCCC
Q 002129 270 TNLEQFCIKGYGGMKFPTWLGDSSFSKLVTLKFKNCDMCTALPSVGQLPSLKHLTVRGMS 329 (962)
Q Consensus 270 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 329 (962)
++|+.|++++|....+| .+. .+++|+.|++++|.+.+. +.+..+++|+.|++++|+
T Consensus 128 ~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 128 KNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred ccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 33444444444444443 222 467788888888776554 667788888888888775
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=3.1e-14 Score=155.32 Aligned_cols=216 Identities=12% Similarity=0.030 Sum_probs=120.7
Q ss_pred cccccc-cCCcccEEEecCCCCcccC-----ccccCCC-cCcEEEcCCCccccc-Chhhhcc-----CCccEEecCCCcc
Q 002129 81 MLPKLL-KLQSLRVFSLRGYRILELP-----DSVGDLR-YLRYLNLSGTEIRTL-PESVSKL-----YNLHSLLLEDCDR 147 (962)
Q Consensus 81 ~~~~~~-~l~~L~~L~L~~~~i~~lp-----~~~~~L~-~L~~L~Ls~n~i~~l-p~~i~~L-----~~L~~L~L~~~~~ 147 (962)
.++.+. ..++|++|+|++|.++..+ ..+..++ +|++|+|++|.++.. +..+..+ ++|++|++++|..
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 344455 4555888888888887665 5677777 788888888888765 4456665 7888888888654
Q ss_pred hhccchhhh----cc-CCCcEEeccCCcccccccc-cccc-----cccccccceeeecCCCCCCcccccccccccceeEE
Q 002129 148 LEKLCADMG----NL-VKLHHLKNSNTKSLEEMPV-GIGR-----LTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCI 216 (962)
Q Consensus 148 ~~~lp~~i~----~L-~~L~~L~l~~n~~~~~lp~-~~~~-----L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~ 216 (962)
....+..+. .+ ++|++|++++|. ++..+. .+.. .++|++|++..+....
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~------------------- 152 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI------------------- 152 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG-------------------
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCH-------------------
Confidence 444444443 33 788888888887 444432 2322 2466666443211100
Q ss_pred ecCCCCcchhhhhhhccCCCC-CCCcEEEEeecCCCCchhhhhHhhhcccCCCC-CCcceEEEeccCCCC-----CCccc
Q 002129 217 SNLENVKHIVDAEDAQLDRKE-NLKELWLRWTLYGSYSREAETEMGVLDMLKPH-TNLEQFCIKGYGGMK-----FPTWL 289 (962)
Q Consensus 217 ~~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~-----~p~~~ 289 (962)
.........+...+ +|++|++++|........ .....+... ++|++|++++|.... ++..+
T Consensus 153 -------~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~-----~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 153 -------KSSDELIQILAAIPANVNSLNLRGNNLASKNCA-----ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp -------SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH-----HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred -------HHHHHHHHHHhcCCccccEeeecCCCCchhhHH-----HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 00111222233333 677777776653222211 111223333 367777777766544 33333
Q ss_pred cCCCCCCceEEEEecCCCCCCCC-----CCCCCCCCCeEEEcCCC
Q 002129 290 GDSSFSKLVTLKFKNCDMCTALP-----SVGQLPSLKHLTVRGMS 329 (962)
Q Consensus 290 ~~~~l~~L~~L~L~~~~~~~~l~-----~l~~l~~L~~L~L~~~~ 329 (962)
.. ..++|++|++++|.+....+ .+..+++|++|++++|.
T Consensus 221 ~~-~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 221 SS-IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HH-SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred hc-CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 21 13467777777776544321 34556667777776663
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=9e-13 Score=131.23 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=89.1
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCcccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAMLA 768 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~L~ 768 (962)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .++.++.. +..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEE
Confidence 68899999998877666677888889999999888776555556778888888888888 45565554 34577888888
Q ss_pred cccccccccCccccCCCcccceeecCCCCCCCCCCCC--CCCCccceEeecCc
Q 002129 769 IYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGN 819 (962)
Q Consensus 769 l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~ 819 (962)
+++|......+..+..+++|++|++++| .+..++.. ..+++|++|++++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 8888744433445677888888888877 44444431 22344444444444
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=8.4e-13 Score=133.28 Aligned_cols=145 Identities=20% Similarity=0.286 Sum_probs=111.4
Q ss_pred eEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCc-cccCCCcC
Q 002129 37 RHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPD-SVGDLRYL 114 (962)
Q Consensus 37 r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~~~L~~L 114 (962)
+.+++.++.+..+. ..+ .++|+.|.+.++. ...+++..+ .+++|++|+|++|.++.+|. .|..+++|
T Consensus 22 ~~v~c~~~~l~~ip--~~~--~~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 22 TTVDCRSKRHASVP--AGI--PTNAQILYLHDNQ-------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90 (229)
T ss_dssp TEEECTTSCCSSCC--SCC--CTTCSEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEeEccCCCcCccC--CCC--CCCCCEEEcCCCc-------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence 34555444443322 222 3788999887654 345555555 89999999999999998874 57899999
Q ss_pred cEEEcCCCcccccChh-hhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccc-ccccccccccceee
Q 002129 115 RYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFV 192 (962)
Q Consensus 115 ~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~ 192 (962)
++|+|++|+|+.+|.. +..+++|++|++++| .+..+|..+..+++|++|++++|. +..+|.. +..+++|+.|++..
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeC
Confidence 9999999999988765 789999999999984 577899999999999999999998 7777754 88888998887654
Q ss_pred ec
Q 002129 193 VG 194 (962)
Q Consensus 193 ~~ 194 (962)
+.
T Consensus 169 N~ 170 (229)
T 3e6j_A 169 NP 170 (229)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=9.2e-13 Score=150.03 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=109.3
Q ss_pred cccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCC
Q 002129 90 SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNT 169 (962)
Q Consensus 90 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n 169 (962)
+|++|+|++|.++.+|..+. ++|++|+|++|.|+.+| +.+++|++|++++| .+..+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 77777777777777776553 67777777777777777 44677777777774 4555666 544 7777777777
Q ss_pred cccccccccccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhccCCCCCCCcEEEEeecC
Q 002129 170 KSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQLDRKENLKELWLRWTLY 249 (962)
Q Consensus 170 ~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 249 (962)
. +..+|. .+++|+.|++..+... . ++. .+++|+.|++++|..
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls~N~l~------------------------~-------lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINADNNQLT------------------------M-------LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCSSCCS------------------------C-------CCC---CCTTCCEEECCSSCC
T ss_pred c-CCCCCC---cCccccEEeCCCCccC------------------------c-------CCC---cCCCcCEEECCCCCC
Confidence 7 555665 4566666644322110 0 000 234566666666543
Q ss_pred CCCchhhhhHhhhcccCCCCCCcceEEEeccCCCCCCccccCCCCCCc-------eEEEEecCCCCCCCCCCCCCCCCCe
Q 002129 250 GSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSSFSKL-------VTLKFKNCDMCTALPSVGQLPSLKH 322 (962)
Q Consensus 250 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~~l~~l~~L~~ 322 (962)
...+ .+. ++|+.|++++|....+|. +.. +| +.|++++|.+....+.+..+++|+.
T Consensus 173 ~~lp-----------~l~--~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 173 TFLP-----------ELP--ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRITHIPENILSLDPTCT 234 (571)
T ss_dssp SCCC-----------CCC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEE
T ss_pred CCcc-----------hhh--CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCcceecCHHHhcCCCCCE
Confidence 2211 122 677777777777777776 431 55 8888888876643334666788888
Q ss_pred EEEcCCCCc
Q 002129 323 LTVRGMSKV 331 (962)
Q Consensus 323 L~L~~~~~~ 331 (962)
|++++|+..
T Consensus 235 L~L~~N~l~ 243 (571)
T 3cvr_A 235 IILEDNPLS 243 (571)
T ss_dssp EECCSSSCC
T ss_pred EEeeCCcCC
Confidence 888777643
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=9.1e-13 Score=132.03 Aligned_cols=147 Identities=12% Similarity=0.122 Sum_probs=112.6
Q ss_pred eEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCccc-ccccc-cCCcccEEEecCCCCcccCc-cccCCCc
Q 002129 37 RHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSM-LPKLL-KLQSLRVFSLRGYRILELPD-SVGDLRY 113 (962)
Q Consensus 37 r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~-~l~~L~~L~L~~~~i~~lp~-~~~~L~~ 113 (962)
+++.+.++.+..+. ..+ .+.++.|.+..+. ...+ +..++ .+++|++|+|++|.|+.++. .|.++++
T Consensus 14 ~~l~~s~n~l~~iP--~~~--~~~~~~L~L~~N~-------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKLNKIP--EHI--PQYTAELRLNNNE-------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82 (220)
T ss_dssp TEEECCSSCCSSCC--SCC--CTTCSEEECCSSC-------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CEeEeCCCCcccCc--cCC--CCCCCEEEcCCCc-------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence 46777776655432 222 2356788876653 3444 34555 99999999999999998754 7999999
Q ss_pred CcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccc-ccccccccccccccee
Q 002129 114 LRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEM-PVGIGRLTCLQTLCSF 191 (962)
Q Consensus 114 L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~l-p~~~~~L~~L~~L~~~ 191 (962)
|++|+|++|.++.+|.. |+.+++|++|++++|...+..|..|..+++|++|++++|. +..+ |..++.+++|++|++.
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEec
Confidence 99999999999988754 8999999999999965445557789999999999999998 5555 6679999999999776
Q ss_pred eecC
Q 002129 192 VVGK 195 (962)
Q Consensus 192 ~~~~ 195 (962)
.+..
T Consensus 162 ~N~l 165 (220)
T 2v70_A 162 ANPF 165 (220)
T ss_dssp SCCE
T ss_pred CcCC
Confidence 5443
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=2.1e-12 Score=130.38 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=114.4
Q ss_pred ccCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCc-cc
Q 002129 31 RFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPD-SV 108 (962)
Q Consensus 31 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~ 108 (962)
.++..+++|.+.++.+.... ...+..+++|+.|.+.++. ...+++..+ .+++|++|+|++|.++.+|. .|
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~-------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQ-------LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCC-------CCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence 35678999999999887653 4567889999999998764 467777777 99999999999999998865 47
Q ss_pred cCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccc-hhhhccCCCcEEeccCCcc
Q 002129 109 GDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTKS 171 (962)
Q Consensus 109 ~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~~ 171 (962)
..+++|++|+|++|+++.+|..+..+++|++|++++| .+..+| ..+..+++|++|++++|.+
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 9999999999999999999999999999999999995 566676 4589999999999999983
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=1.3e-12 Score=124.97 Aligned_cols=103 Identities=23% Similarity=0.244 Sum_probs=53.0
Q ss_pred cCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccc-cChhhhccCCccEEecCCCcchhccc--hhhhccCCCcE
Q 002129 87 KLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRT-LPESVSKLYNLHSLLLEDCDRLEKLC--ADMGNLVKLHH 163 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~-lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~ 163 (962)
.+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|++|++++| .+..+| ..++.+++|++
T Consensus 47 ~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCE
T ss_pred hCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCE
Confidence 555555555555555544 445555555555555555554 4444445555555555553 333333 34555555555
Q ss_pred EeccCCcccccccc----cccccccccccceee
Q 002129 164 LKNSNTKSLEEMPV----GIGRLTCLQTLCSFV 192 (962)
Q Consensus 164 L~l~~n~~~~~lp~----~~~~L~~L~~L~~~~ 192 (962)
|++++|. +..+|. .+..+++|++|++..
T Consensus 125 L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 125 LDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EECCSSG-GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred EEeeCCc-CcchHHHHHHHHHhCccCcEecCCC
Confidence 5555555 444443 355555555554443
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=1.8e-12 Score=129.81 Aligned_cols=135 Identities=15% Similarity=0.117 Sum_probs=113.1
Q ss_pred ccCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCc-cc
Q 002129 31 RFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPD-SV 108 (962)
Q Consensus 31 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~ 108 (962)
.++..+++|.+.++.+........+..+++|++|.+.++. ...+++..+ ++++|++|+|++|.++.+|. .|
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 101 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-------ITDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-------CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGG
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-------CCEECHHHhCCCCCCCEEECCCCccCccCHhHh
Confidence 3456789999999988765433457889999999987764 456666556 99999999999999998864 58
Q ss_pred cCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccc
Q 002129 109 GDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSL 172 (962)
Q Consensus 109 ~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~ 172 (962)
..+++|++|+|++|.|+.+ |..|..+++|++|++++|...+..|..|..+++|++|++++|.+.
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999999999999988 567999999999999996544444788999999999999999843
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=1e-12 Score=122.90 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=98.2
Q ss_pred CCceeEEeeccccCCCCCCCC-cccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccc-cChhhhccC
Q 002129 58 IQHLRTFLPVILSNSKPGYLA-PSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRT-LPESVSKLY 135 (962)
Q Consensus 58 ~~~Lr~L~l~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~-lp~~i~~L~ 135 (962)
.++|+.|.+.++. +. ..+|+.+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.++
T Consensus 16 ~~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 4677888776653 12 24555444889999999999999888 778999999999999999987 777788899
Q ss_pred CccEEecCCCcchhccc--hhhhccCCCcEEeccCCcccccccc----cccccccccccce
Q 002129 136 NLHSLLLEDCDRLEKLC--ADMGNLVKLHHLKNSNTKSLEEMPV----GIGRLTCLQTLCS 190 (962)
Q Consensus 136 ~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~n~~~~~lp~----~~~~L~~L~~L~~ 190 (962)
+|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .++.+++|+.|++
T Consensus 89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 99999999954 55554 778999999999999998 666665 5888888888864
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=2.2e-12 Score=148.91 Aligned_cols=77 Identities=10% Similarity=0.128 Sum_probs=40.9
Q ss_pred hhcceeecccccCccccCccCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEE
Q 002129 525 ELLEYLRLSYCEGLVKLPQSSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILE 604 (962)
Q Consensus 525 ~~L~~L~ls~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 604 (962)
++|+.|++++|.. ..++ .+..+++|+.|+|++|. +..++++..+++|+.|++++|. +..++. + ..+++|++|+
T Consensus 43 ~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~-l--~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENK-IKDLSS-L--KDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCTT-S--TTCTTCCEEE
T ss_pred CCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCC-CCCChh-h--ccCCCCCEEE
Confidence 5666666666553 3333 35556666666666643 3334445555666666666654 334431 1 4555566666
Q ss_pred ecCC
Q 002129 605 ISGC 608 (962)
Q Consensus 605 l~~c 608 (962)
+++|
T Consensus 116 Ls~N 119 (605)
T 1m9s_A 116 LEHN 119 (605)
T ss_dssp CTTS
T ss_pred ecCC
Confidence 5553
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=2e-12 Score=123.65 Aligned_cols=138 Identities=25% Similarity=0.264 Sum_probs=112.4
Q ss_pred ccCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcc-cCcccc
Q 002129 31 RFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILE-LPDSVG 109 (962)
Q Consensus 31 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~~~ 109 (962)
..++.+++|.+.++.+........+..+++|+.|.+.++. ...+ +.+..+++|++|++++|.++. +|..+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-------LISV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-------CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-------CCCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 4568899999999887621223446788999999987764 2333 445599999999999999997 777788
Q ss_pred CCCcCcEEEcCCCcccccC--hhhhccCCccEEecCCCcchhccch----hhhccCCCcEEeccCCccccccccc
Q 002129 110 DLRYLRYLNLSGTEIRTLP--ESVSKLYNLHSLLLEDCDRLEKLCA----DMGNLVKLHHLKNSNTKSLEEMPVG 178 (962)
Q Consensus 110 ~L~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~n~~~~~lp~~ 178 (962)
.+++|++|++++|.++.+| ..++.+++|++|++++| .+..+|. .+..+++|++|++++|. ..++|.+
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 8999999999999999987 67999999999999995 5666665 78999999999999998 7777754
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.9e-12 Score=124.85 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=107.8
Q ss_pred ccccCCCceeEEeeccccCCCCCCCCcccccccccC-CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChh-
Q 002129 53 GDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKL-QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPES- 130 (962)
Q Consensus 53 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~- 130 (962)
+.+.++++|+.|.+.++. ...+ +.+..+ ++|++|++++|.++.+ ..|+.+++|++|++++|.++.+|..
T Consensus 13 ~~~~~~~~L~~L~l~~n~-------l~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK-------IPVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSC-------CCSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCCC-------Cchh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 455678899999887764 2334 456644 4999999999999988 7899999999999999999999866
Q ss_pred hhccCCccEEecCCCcchhccch--hhhccCCCcEEeccCCccccccccc----ccccccccccceeee
Q 002129 131 VSKLYNLHSLLLEDCDRLEKLCA--DMGNLVKLHHLKNSNTKSLEEMPVG----IGRLTCLQTLCSFVV 193 (962)
Q Consensus 131 i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~n~~~~~lp~~----~~~L~~L~~L~~~~~ 193 (962)
++.+++|++|++++| .++.+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|++..+
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 499999999999995 5688887 78999999999999998 7788875 889999999976553
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=1.5e-12 Score=154.49 Aligned_cols=153 Identities=20% Similarity=0.202 Sum_probs=97.8
Q ss_pred CCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCccccCC
Q 002129 33 SRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPDSVGDL 111 (962)
Q Consensus 33 ~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L 111 (962)
...++++++..+.+... ...+....+|+.+.+..... ......++++.+ .++.|++|+|++|.+..+|..+..+
T Consensus 172 ~~~~~~l~L~~n~~~~~--~~~~l~~l~Ls~~~i~~~~~---~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l 246 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA--NQALLQHKKLSQYSIDEDDD---IENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKY 246 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGC
T ss_pred CCccceEEeeCCCCCcc--hhhHhhcCccCcccccCccc---cccceecChhhhccCCCCcEEECCCCCCCCCChhhcCC
Confidence 35688888877765542 23334444555554433221 011223566666 9999999999999999999999999
Q ss_pred CcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccccccccccccccee
Q 002129 112 RYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSF 191 (962)
Q Consensus 112 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~ 191 (962)
++|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|+.|++|++|+|++|. ++.+|.+|+.|++|++|++.
T Consensus 247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECT
T ss_pred CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCC
Confidence 9999999999999999999999999999999996 466899999999999999999998 78999999999999999764
Q ss_pred e
Q 002129 192 V 192 (962)
Q Consensus 192 ~ 192 (962)
.
T Consensus 325 ~ 325 (727)
T 4b8c_D 325 G 325 (727)
T ss_dssp T
T ss_pred C
Confidence 4
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=3.9e-12 Score=124.23 Aligned_cols=102 Identities=23% Similarity=0.336 Sum_probs=65.0
Q ss_pred CcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhcc-chhhhccCCCcEEec
Q 002129 89 QSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKL-CADMGNLVKLHHLKN 166 (962)
Q Consensus 89 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l 166 (962)
++|++|++++|.|+.+|..|.++++|++|+|++|.|+.++. .|..+++|++|++++|. +..+ |..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEEC
Confidence 45666777777776666666677777777777777766653 36667777777777643 3333 345666777777777
Q ss_pred cCCccccccccc-ccccccccccceee
Q 002129 167 SNTKSLEEMPVG-IGRLTCLQTLCSFV 192 (962)
Q Consensus 167 ~~n~~~~~lp~~-~~~L~~L~~L~~~~ 192 (962)
++|. +..+|.+ +..+++|+.|++..
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCC-CCeeChhhhhcCccccEEEeCC
Confidence 7766 5555554 66666666665543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=6.7e-13 Score=157.48 Aligned_cols=123 Identities=22% Similarity=0.277 Sum_probs=106.3
Q ss_pred cccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhh
Q 002129 52 FGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESV 131 (962)
Q Consensus 52 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i 131 (962)
...+..++.|++|.+..+. ...+++.++.+++|++|+|++|.|+.+|..|+.|++|++|+|++|.|+.+|..|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-------l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-------IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp -----CCCCCCEEECTTSC-------CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred hhhhccCCCCcEEECCCCC-------CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 3456788999999987764 457888888999999999999999999999999999999999999999999999
Q ss_pred hccCCccEEecCCCcchhccchhhhccCCCcEEeccCCccccccccccccc
Q 002129 132 SKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRL 182 (962)
Q Consensus 132 ~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L 182 (962)
+.|++|++|+|++| .++.+|.+|+.|++|++|+|++|.+.+.+|..++.+
T Consensus 290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 99999999999995 678999999999999999999999555666666554
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=1e-11 Score=128.15 Aligned_cols=142 Identities=19% Similarity=0.210 Sum_probs=87.5
Q ss_pred CceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCc
Q 002129 34 RYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRY 113 (962)
Q Consensus 34 ~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~ 113 (962)
..++++.+.++.+..+ +.+..+++|++|.+.++. ...+++ +..+++|++|++++|.++.+|.... .+
T Consensus 41 ~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~L~~N~-------i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~ 107 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSL---AGMQFFTNLKELHLSHNQ-------ISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--AC 107 (263)
T ss_dssp TTCSEEECTTSCCCCC---TTGGGCTTCCEEECCSSC-------CCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SS
T ss_pred CcCcEEECcCCCcccc---hHHhhCCCCCEEECCCCc-------cCCChh-hccCCCCCEEECCCCccCCcCcccc--Cc
Confidence 4566676666655432 345566677777665543 233333 4467777777777777776654333 67
Q ss_pred CcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCCcccccccccccccccccccceeee
Q 002129 114 LRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVV 193 (962)
Q Consensus 114 L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~ 193 (962)
|++|++++|.++.+| .++.+++|++|++++| .+..+| .++.+++|++|++++|. +..+ ..+..+++|+.|++..+
T Consensus 108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEE
T ss_pred ccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCC
Confidence 777777777776664 3667777777777764 455554 56667777777777776 4444 44666666666655443
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=3.9e-12 Score=138.39 Aligned_cols=103 Identities=25% Similarity=0.322 Sum_probs=46.2
Q ss_pred cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhhccCCCcEE
Q 002129 87 KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHL 164 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 164 (962)
.+++|++|+|++|.|+.++ ..|..+++|++|+|++|+++.+|. .|..+++|++|+|++|......|..|..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 4445555555555554443 234455555555555555544433 24445555555555432222223344455555555
Q ss_pred eccCCcccccccccc----cccccccccce
Q 002129 165 KNSNTKSLEEMPVGI----GRLTCLQTLCS 190 (962)
Q Consensus 165 ~l~~n~~~~~lp~~~----~~L~~L~~L~~ 190 (962)
++++|. +..+|..+ +.+++|+.|++
T Consensus 142 ~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 142 YLSQNQ-ISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp ECCSSC-CCSCCGGGTC----CTTCCEEEC
T ss_pred ECCCCc-CCeeCHHHhcCcccCCcCCEEEC
Confidence 555554 44444432 33444444443
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=5.5e-12 Score=123.29 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=45.1
Q ss_pred cCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccchhhhccCCCcEE
Q 002129 87 KLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHL 164 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 164 (962)
.+++|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. |+.+++|++|++++|...+..|..++.+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 555555555555555544 44555555555555555555554432 5555555555555543333334455555555555
Q ss_pred eccCCc
Q 002129 165 KNSNTK 170 (962)
Q Consensus 165 ~l~~n~ 170 (962)
++++|.
T Consensus 132 ~L~~N~ 137 (192)
T 1w8a_A 132 NLASNP 137 (192)
T ss_dssp ECTTCC
T ss_pred EeCCCC
Confidence 555555
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=5.4e-12 Score=137.33 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=118.8
Q ss_pred ccCccEEEecCCCCchhhhhhcc-CCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCcccccc
Q 002129 689 PPSLKLLLVWGCSKLESIAEMLD-NNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLAM 766 (962)
Q Consensus 689 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~~ 766 (962)
|+.++.|++++|.+.+..+..+. ++++|++|+|++|.+.+..+..+.++++|++|+|++| .+..++.. +..+++|+.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCE
Confidence 36789999999988777777777 8999999999998877766778889999999999998 46666553 556889999
Q ss_pred cccccccccccCccccCCCcccceeecCCCCCCCCCCCC-----CCCCccceEeecCchhhhHHHHhccccccccCc--c
Q 002129 767 LAIYNCKRLEALPKGLHNLKSLQELRIGKGVALPSLEED-----GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSS--L 839 (962)
Q Consensus 767 L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L 839 (962)
|++++|......|..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|.+..... ..+..++. |
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~~~l 191 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL----TDLQKLPAWVK 191 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCH----HHHHHSCHHHH
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH----HHhhhccHhhc
Confidence 999999866666778889999999999998 56666654 347888889998887765433 23555665 4
Q ss_pred ceeecccC
Q 002129 840 RQLTIMNC 847 (962)
Q Consensus 840 ~~L~l~~~ 847 (962)
+.|++.+|
T Consensus 192 ~~l~l~~N 199 (361)
T 2xot_A 192 NGLYLHNN 199 (361)
T ss_dssp TTEECCSS
T ss_pred ceEEecCC
Confidence 77888875
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=6.8e-12 Score=117.21 Aligned_cols=129 Identities=26% Similarity=0.281 Sum_probs=105.4
Q ss_pred ccCCceeEEEEEecCCCcccccccccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcc-cCcccc
Q 002129 31 RFSRYLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILE-LPDSVG 109 (962)
Q Consensus 31 ~~~~~~r~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~~~ 109 (962)
..++.++++.+.++.+.....+..+..+++|+.|.+.++. ...+ +.+..+++|++|++++|.++. +|..++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-------LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-------CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-------CCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 3457899999999887622224566889999999987754 2333 445599999999999999997 788888
Q ss_pred CCCcCcEEEcCCCcccccC--hhhhccCCccEEecCCCcchhccch----hhhccCCCcEEeccC
Q 002129 110 DLRYLRYLNLSGTEIRTLP--ESVSKLYNLHSLLLEDCDRLEKLCA----DMGNLVKLHHLKNSN 168 (962)
Q Consensus 110 ~L~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~ 168 (962)
.+++|++|++++|.++.+| ..++.+++|++|++++| .+..+|. .++.+++|++|++++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 8999999999999999876 77999999999999996 5666664 689999999999864
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=5.7e-11 Score=115.92 Aligned_cols=93 Identities=23% Similarity=0.326 Sum_probs=74.3
Q ss_pred cEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccc-hhhhccCCCcEEeccCCc
Q 002129 92 RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTK 170 (962)
Q Consensus 92 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~ 170 (962)
+++++++++++.+|..+. .+|++|+|++|.|+.+|..|..+++|++|++++|. +..++ ..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc
Confidence 689999999999998765 58999999999999999889999999999999964 55554 568999999999999998
Q ss_pred ccccccc-ccccccccccc
Q 002129 171 SLEEMPV-GIGRLTCLQTL 188 (962)
Q Consensus 171 ~~~~lp~-~~~~L~~L~~L 188 (962)
+..+|. .|+.+++|++|
T Consensus 90 -l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEE
T ss_pred -cCEeCHHHhCCCCCCCEE
Confidence 555543 24444444444
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=3.3e-11 Score=117.76 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=96.5
Q ss_pred CcccccccccCCcccEEEecCCCCcccCcc--ccCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchh
Q 002129 78 APSMLPKLLKLQSLRVFSLRGYRILELPDS--VGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCAD 154 (962)
Q Consensus 78 ~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~--~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~ 154 (962)
...+|..++. +|++|++++|.++.++.. |+.+++|++|+|++|.|+.+ |..|+.+++|++|++++|...+..|..
T Consensus 20 l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 20 LKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp CSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred cCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence 3555655543 899999999999988753 89999999999999999988 677999999999999996544444556
Q ss_pred hhccCCCcEEeccCCcccccccccccccccccccceeeecCC
Q 002129 155 MGNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKD 196 (962)
Q Consensus 155 i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~ 196 (962)
|+.+++|++|++++|.+.+..|..++.+++|++|++..+...
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999999999999954455777999999999987665444
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=3e-11 Score=138.59 Aligned_cols=102 Identities=25% Similarity=0.247 Sum_probs=76.6
Q ss_pred cccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCC
Q 002129 90 SLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNT 169 (962)
Q Consensus 90 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n 169 (962)
.|++|+|++|.++.+|. |+.+++|++|+|++|.|+.+|..|+.+++|++|+|++| .+..+| .++.|++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 47778888888877776 77888888888888888888777888888888888874 455577 7778888888888888
Q ss_pred cccccc--cccccccccccccceeeecC
Q 002129 170 KSLEEM--PVGIGRLTCLQTLCSFVVGK 195 (962)
Q Consensus 170 ~~~~~l--p~~~~~L~~L~~L~~~~~~~ 195 (962)
. +..+ |..++.+++|+.|++..+..
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred C-CCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 7 5555 67778888888776655443
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=3.5e-11 Score=115.85 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=106.6
Q ss_pred cCCceeEEEEEecCCCcccccccccCCC-ceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccc-c
Q 002129 32 FSRYLRHLSYIRGDYDGVQRFGDLYDIQ-HLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSV-G 109 (962)
Q Consensus 32 ~~~~~r~lsl~~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~-~ 109 (962)
-+..++++.+.++.+..+ +.+..+. +|+.|.+.++. ...+ +.+..+++|++|++++|.++.+|..+ +
T Consensus 17 ~~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~-------l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNE-------IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp CTTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSC-------CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred CcCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCC-------CCcc-cccccCCCCCEEECCCCcccccCcchhh
Confidence 356789999999887654 4455555 99999987764 2333 55559999999999999999998655 9
Q ss_pred CCCcCcEEEcCCCcccccCh--hhhccCCccEEecCCCcchhccchh----hhccCCCcEEeccCCc
Q 002129 110 DLRYLRYLNLSGTEIRTLPE--SVSKLYNLHSLLLEDCDRLEKLCAD----MGNLVKLHHLKNSNTK 170 (962)
Q Consensus 110 ~L~~L~~L~Ls~n~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~n~ 170 (962)
.+++|++|++++|.++.+|. .++.+++|++|++++| .+..+|.. ++.+++|+.|++++|.
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999999999999987 7999999999999995 56778875 8999999999999997
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=6.8e-11 Score=113.12 Aligned_cols=102 Identities=23% Similarity=0.256 Sum_probs=81.2
Q ss_pred CcccccccccCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccchh-
Q 002129 78 APSMLPKLLKLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCAD- 154 (962)
Q Consensus 78 ~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~- 154 (962)
...+|..+. ++|++|+|++|.|+.+ |..|+++++|++|+|++|+|+.+|.. |+++++|++|+|++| .+..+|..
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 100 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGA 100 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHH
Confidence 345565554 7889999999999977 56789999999999999999999876 688999999999984 56677765
Q ss_pred hhccCCCcEEeccCCcccccccccccccc
Q 002129 155 MGNLVKLHHLKNSNTKSLEEMPVGIGRLT 183 (962)
Q Consensus 155 i~~L~~L~~L~l~~n~~~~~lp~~~~~L~ 183 (962)
|..+++|++|++++|. +...+..+..++
T Consensus 101 ~~~l~~L~~L~L~~N~-~~c~~~~~~~l~ 128 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNP-WDCECRDIMYLR 128 (174)
T ss_dssp TTTCTTCSEEECCSSC-BCTTBGGGHHHH
T ss_pred hccccCCCEEEeCCCC-cccccccHHHHH
Confidence 8899999999999998 665555454444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=2e-10 Score=110.68 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=63.0
Q ss_pred CceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCcccCc-cccCCCcCcEEEcCCCcccccChh-hhccC
Q 002129 59 QHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILELPD-SVGDLRYLRYLNLSGTEIRTLPES-VSKLY 135 (962)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~ 135 (962)
++|+.|.+.++. ...+++..+ .+++|++|++++|.++.+|. .|+.+++|++|++++|.++.+|.. ++.++
T Consensus 28 ~~l~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNK-------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT 100 (177)
T ss_dssp TTCSEEECCSSC-------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEeCCCc-------ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence 466666665443 234455544 66666666666666666643 356666666666666666666543 56666
Q ss_pred CccEEecCCCcchhccchh-hhccCCCcEEeccCCc
Q 002129 136 NLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSNTK 170 (962)
Q Consensus 136 ~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n~ 170 (962)
+|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus 101 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 101 QLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 6666666664 34455544 4566666666666665
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=2.6e-10 Score=109.88 Aligned_cols=112 Identities=28% Similarity=0.398 Sum_probs=93.3
Q ss_pred cccccccccCCcccEEEecCCCCcccCc-cccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccch-hh
Q 002129 79 PSMLPKLLKLQSLRVFSLRGYRILELPD-SVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA-DM 155 (962)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i 155 (962)
..+|..+. ++|++|++++|.++.+|. .|+.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..+|. .+
T Consensus 20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 96 (177)
T 2o6r_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVF 96 (177)
T ss_dssp SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHh
Confidence 34444333 689999999999998865 579999999999999999999865 799999999999995 5656665 47
Q ss_pred hccCCCcEEeccCCccccccccc-ccccccccccceeeec
Q 002129 156 GNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFVVG 194 (962)
Q Consensus 156 ~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~ 194 (962)
+.+++|++|++++|. +..+|.+ +..+++|++|++..+.
T Consensus 97 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 97 DKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 999999999999998 7788876 6889999999776544
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=6.3e-11 Score=135.91 Aligned_cols=128 Identities=23% Similarity=0.277 Sum_probs=89.7
Q ss_pred cccCCcccEEE-ecCCCCcccCc------cccC--CCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhh
Q 002129 85 LLKLQSLRVFS-LRGYRILELPD------SVGD--LRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADM 155 (962)
Q Consensus 85 ~~~l~~L~~L~-L~~~~i~~lp~------~~~~--L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i 155 (962)
+..+++|+.|+ ++.|.+..++. .+.. ...|++|+|++|.++.+|. |+.+++|++|++++| .+..+|..|
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~ 482 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPAL 482 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGG
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhh
Confidence 33778888887 55554333321 1111 1258889999999988887 888999999999985 566888889
Q ss_pred hccCCCcEEeccCCcccccccccccccccccccceeeecCCCCCCcccccccccccceeEEe
Q 002129 156 GNLVKLHHLKNSNTKSLEEMPVGIGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCIS 217 (962)
Q Consensus 156 ~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~ 217 (962)
+.|++|++|++++|. +..+| .++.+++|++|++..+.......+..+..++.|+ .+.+.
T Consensus 483 ~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~-~L~L~ 541 (567)
T 1dce_A 483 AALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV-LLNLQ 541 (567)
T ss_dssp GGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC-EEECT
T ss_pred hcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC-EEEec
Confidence 999999999999988 66787 7888889988877655443322245566666665 45444
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=2.4e-10 Score=122.66 Aligned_cols=286 Identities=15% Similarity=0.146 Sum_probs=141.0
Q ss_pred cCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCcc-ccCccCCCCCCccEEEecCCCCccccCC--CC
Q 002129 493 DVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLV-KLPQSSLSLSSLREIEIYGCRSLVSFPE--VA 569 (962)
Q Consensus 493 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~ 569 (962)
.+.+++.|.+++. +.... ...+...+++|+.|+|++|.... ..+ ...++.++.+.+..+ .+|. +.
T Consensus 23 ~~~~l~~L~l~g~-----i~~~~-~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~----~I~~~aF~ 90 (329)
T 3sb4_A 23 EANSITHLTLTGK-----LNAED-FRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMAN----FVPAYAFS 90 (329)
T ss_dssp HHHHCSEEEEEEE-----ECHHH-HHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTT----EECTTTTE
T ss_pred hhCceeEEEEecc-----ccHHH-HHHHHHhhccCeEEecCcceeEEecCc--ccccccccccccccc----ccCHHHhc
Confidence 4677889998862 11111 11233323779999999988651 111 112223444444443 3332 33
Q ss_pred C--------CCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCcccCCCCCCCCceEEecccCCCccccccc
Q 002129 570 L--------PSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTYIAGVQLPPSLKRLKICHCDNIRTLTVEE 641 (962)
Q Consensus 570 ~--------~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 641 (962)
. +++|+.+++.+ .++.++...| .++++|+++++.+ +.+..++...+........+.........
T Consensus 91 ~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF-~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~---- 162 (329)
T 3sb4_A 91 NVVNGVTKGKQTLEKVILSE--KIKNIEDAAF-KGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYR---- 162 (329)
T ss_dssp EEETTEEEECTTCCC-CBCT--TCCEECTTTT-TTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHH----
T ss_pred ccccccccccCCCcEEECCc--cccchhHHHh-hcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhh----
Confidence 4 67888888877 3667766665 7788888888887 44555555544333333322211100000
Q ss_pred cccccCCCCccccccceeEeeCCCCcccccc---CCCccccccccccCCCccCccEEEecCCCCchhhhhhccCCCCcce
Q 002129 642 GIQCSSGRRYTSSLLEHLEIYSCPSLTCIFS---KNELPATLESLEVGNLPPSLKLLLVWGCSKLESIAEMLDNNTSLEK 718 (962)
Q Consensus 642 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~l~~l~~~~l~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 718 (962)
....++.....+|..++.... .+.++..+.. ...-+.+++.+.+.+.-...........+++|+.
T Consensus 163 ----------~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~ 230 (329)
T 3sb4_A 163 ----------FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK--AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVS 230 (329)
T ss_dssp ----------TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH--TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCE
T ss_pred ----------ccccccccccccccccceeEEecCCCcHHHHHhh--cccCccccceEEEeeeecHHHHHHHHHhcCCCeE
Confidence 000122222333333331100 0001100000 0001145566666554322222222334667777
Q ss_pred EeecCCccccccCccccCCCCccEEEcccCCCcccCCCC-CCCccccc-ccccccccccccCc-cccCCCcccceeecCC
Q 002129 719 INISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEG-GLPCAKLA-MLAIYNCKRLEALP-KGLHNLKSLQELRIGK 795 (962)
Q Consensus 719 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~L~-~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~ 795 (962)
+++++|......+..|.++++|++|++.++ ++.++.. +..+++|+ .+++.+ . +..++ ..|.++++|+.+++++
T Consensus 231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp EECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECS
T ss_pred EECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCC
Confidence 777766544444455666777777777665 5555544 33466676 666665 2 34443 4566777777777665
Q ss_pred CCCCCCCCCC--CCCCccceEe
Q 002129 796 GVALPSLEED--GLPTNLHVLL 815 (962)
Q Consensus 796 ~~~l~~~~~~--~~~~~L~~L~ 815 (962)
+ .++.++.. ..+++|+.++
T Consensus 307 n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 307 D-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp S-CCCEECTTTTCTTCCCCEEE
T ss_pred C-ccCccchhhhcCCcchhhhc
Confidence 5 45444442 3345666554
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=3.8e-12 Score=125.35 Aligned_cols=126 Identities=20% Similarity=0.235 Sum_probs=84.2
Q ss_pred cccCCCceeEEeeccccCCCCCCCCcccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhc
Q 002129 54 DLYDIQHLRTFLPVILSNSKPGYLAPSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSK 133 (962)
Q Consensus 54 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~ 133 (962)
.+..+++|++|.+.++. ...+| .+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+| .++.
T Consensus 43 ~~~~l~~L~~L~ls~n~-------l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-------IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEE-------ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCCC-------Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 45667777777776553 23333 444777777777777777777777777777777777777777776 5777
Q ss_pred cCCccEEecCCCcchhccch--hhhccCCCcEEeccCCccccccccc----------ccccccccccc
Q 002129 134 LYNLHSLLLEDCDRLEKLCA--DMGNLVKLHHLKNSNTKSLEEMPVG----------IGRLTCLQTLC 189 (962)
Q Consensus 134 L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~n~~~~~lp~~----------~~~L~~L~~L~ 189 (962)
+++|++|++++| .+..+|. .+..+++|++|++++|.+....|.. +..+++|+.|+
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 777777777774 4555543 5777777777777777733333321 56666666664
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=3.3e-10 Score=108.01 Aligned_cols=89 Identities=27% Similarity=0.363 Sum_probs=64.6
Q ss_pred cccccccccCCcccEEEecCCCCccc-CccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCcchhccch-hh
Q 002129 79 PSMLPKLLKLQSLRVFSLRGYRILEL-PDSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCDRLEKLCA-DM 155 (962)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i 155 (962)
..+|..+. ++|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. |..+++|++|+|++| .+..+|. .|
T Consensus 22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~ 98 (170)
T 3g39_A 22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAF 98 (170)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHh
Confidence 44554443 6777888888888776 55678888888888888888877655 677888888888874 4555554 47
Q ss_pred hccCCCcEEeccCCc
Q 002129 156 GNLVKLHHLKNSNTK 170 (962)
Q Consensus 156 ~~L~~L~~L~l~~n~ 170 (962)
..+++|++|++++|.
T Consensus 99 ~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 99 DNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCCEEEeCCCC
Confidence 778888888888876
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=3e-10 Score=108.29 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=87.6
Q ss_pred ccEEEecCCCCcccCccccCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchh-hhccCCCcEEeccC
Q 002129 91 LRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSN 168 (962)
Q Consensus 91 L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~ 168 (962)
.+++++++|.++.+|..+. .+|++|+|++|.|+.+ |..|+++++|++|++++| .+..+|.. |..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 5789999999999998774 8999999999999988 566999999999999995 56677655 69999999999999
Q ss_pred Cccccccccc-ccccccccccceeeecC
Q 002129 169 TKSLEEMPVG-IGRLTCLQTLCSFVVGK 195 (962)
Q Consensus 169 n~~~~~lp~~-~~~L~~L~~L~~~~~~~ 195 (962)
|. +..+|.+ ++.+++|++|++..+..
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 99 7788775 99999999997765543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=3.3e-10 Score=108.31 Aligned_cols=100 Identities=20% Similarity=0.352 Sum_probs=88.0
Q ss_pred cEEEecCCCCcccCccccCCCcCcEEEcCCCccccc-ChhhhccCCccEEecCCCcchhccchh-hhccCCCcEEeccCC
Q 002129 92 RVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTL-PESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSNT 169 (962)
Q Consensus 92 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n 169 (962)
+++++++++++.+|..+. .+|++|+|++|.|+.+ |..|+++++|++|+|++| .+..+|.. |.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 789999999999998775 8999999999999988 556999999999999995 67778765 689999999999999
Q ss_pred ccccccccc-ccccccccccceeeecC
Q 002129 170 KSLEEMPVG-IGRLTCLQTLCSFVVGK 195 (962)
Q Consensus 170 ~~~~~lp~~-~~~L~~L~~L~~~~~~~ 195 (962)
. +..+|.+ ++.+++|++|++..+..
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred c-cceeCHHHhccccCCCEEEeCCCCc
Confidence 9 7888876 99999999997765543
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=4.8e-10 Score=120.21 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=46.3
Q ss_pred CCccceEeecCchhhhHHHHhccccccccCccceeecccCCCCCccCCCCCCCCCCCccccCCCccc-eEeeccCCCCcc
Q 002129 808 PTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMNCDDDMVSFPPKADDKGSGTVLPLPASLT-YLRIEGFPNLER 886 (962)
Q Consensus 808 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~ 886 (962)
+++|+.+++++|.+..... ..|.++++|+++++.++ +..++. .+|..+++|+ ++++.+ .++.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n---i~~I~~--------~aF~~~~~L~~~l~l~~--~l~~ 287 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN---LKTIGQ--------RVFSNCGRLAGTLELPA--SVTA 287 (329)
T ss_dssp CTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT---CCEECT--------TTTTTCTTCCEEEEECT--TCCE
T ss_pred cCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc---cceehH--------HHhhCChhccEEEEEcc--cceE
Confidence 4555555555554433322 44555666666666552 333332 2245555565 666655 4555
Q ss_pred ccc-ccccCCCcCeEeccCCCCCccCCCCCC
Q 002129 887 LTS-SIVDLQNLTGLVLGNCPKLKYFPEKGL 916 (962)
Q Consensus 887 l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~ 916 (962)
|+. .|.++++|++|++.+ ++++.++...+
T Consensus 288 I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF 317 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATG-DKITTLGDELF 317 (329)
T ss_dssp ECTTTTTTCTTEEEEEECS-SCCCEECTTTT
T ss_pred EchhhhhCCccCCEEEeCC-CccCccchhhh
Confidence 542 345555566665544 34555555443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=8.2e-12 Score=122.97 Aligned_cols=110 Identities=22% Similarity=0.243 Sum_probs=95.0
Q ss_pred cccccccccCCcccEEEecCCCCcccCccccCCCcCcEEEcCCCcccccChhhhccCCccEEecCCCcchhccchhhhcc
Q 002129 79 PSMLPKLLKLQSLRVFSLRGYRILELPDSVGDLRYLRYLNLSGTEIRTLPESVSKLYNLHSLLLEDCDRLEKLCADMGNL 158 (962)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 158 (962)
..+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..++.+++|++|++++| .+..+| .++.+
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l 114 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKL 114 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccC
Confidence 344445569999999999999999998 899999999999999999999998899999999999995 666777 79999
Q ss_pred CCCcEEeccCCcccccccc--cccccccccccceee
Q 002129 159 VKLHHLKNSNTKSLEEMPV--GIGRLTCLQTLCSFV 192 (962)
Q Consensus 159 ~~L~~L~l~~n~~~~~lp~--~~~~L~~L~~L~~~~ 192 (962)
++|++|++++|. +..+|. .++.+++|++|++..
T Consensus 115 ~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 115 VNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECS
T ss_pred CCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecC
Confidence 999999999998 776664 588888998886643
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=6.2e-08 Score=105.86 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=77.4
Q ss_pred CccEEEecCCCCchhhhhhccCCCCcceEeecCCccc-----cccCccccCCCCccEEEcccCCCcccCCCCC-CCcccc
Q 002129 691 SLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNL-----QTLPSGLHNLCQLQEISIASCGNLVSSPEGG-LPCAKL 764 (962)
Q Consensus 691 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~~L 764 (962)
+|+.+.+.+ .....-..+|.+|++|+.+++.++... ...+..|.++++|+.+.+.+ .+..++... ..|++|
T Consensus 249 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 249 GITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSC
T ss_pred CccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCc
Confidence 455555532 222233456777788888887765543 22345677788888888874 366666543 346788
Q ss_pred cccccccccccccCc-cccCCCcccceeecCCCCCCCCCCCC---CCCCccceEeecCchhhh
Q 002129 765 AMLAIYNCKRLEALP-KGLHNLKSLQELRIGKGVALPSLEED---GLPTNLHVLLINGNMEIW 823 (962)
Q Consensus 765 ~~L~l~~c~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~ 823 (962)
+.+.+..+ +..++ ..|.++ +|+.+++.++. +..++.. +....++.+.+..+....
T Consensus 326 ~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 326 TQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp CEEEECTT--CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred cEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHHHHHH
Confidence 88888554 44443 367777 88888888773 3333322 334578888888765433
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=6.3e-09 Score=112.62 Aligned_cols=89 Identities=20% Similarity=0.156 Sum_probs=43.6
Q ss_pred ccccccccCCcccEEEecC-CCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchhhh
Q 002129 80 SMLPKLLKLQSLRVFSLRG-YRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCADMG 156 (962)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~-~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~ 156 (962)
.+|+ +..+++|++|+|++ |.|+.+| ..|++|.+|++|+|++|+|+.+|. .|++|++|++|+|++| .+..+|..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence 3444 33555555555553 5555544 345555555555555555554432 3455555555555552 3444443322
Q ss_pred ccCCCcEEeccCCc
Q 002129 157 NLVKLHHLKNSNTK 170 (962)
Q Consensus 157 ~L~~L~~L~l~~n~ 170 (962)
....|+.|++.+|.
T Consensus 101 ~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCCEEECCSSC
T ss_pred ccCCceEEEeeCCC
Confidence 22225555555554
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.77 E-value=1e-07 Score=104.13 Aligned_cols=245 Identities=12% Similarity=0.087 Sum_probs=129.3
Q ss_pred Ccccccccc-cCCcccEEEecCCCCcccC-ccccCCCcCcEEEcCCCcccccCh-hhhccCCccEEecCCCcchhccchh
Q 002129 78 APSMLPKLL-KLQSLRVFSLRGYRILELP-DSVGDLRYLRYLNLSGTEIRTLPE-SVSKLYNLHSLLLEDCDRLEKLCAD 154 (962)
Q Consensus 78 ~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~ 154 (962)
...+.+..| + .+|+.+.+..+ ++.++ .+|.+ .+|+.+.+.. .++.++. .|.++.+|+.+++.. +.+..+|..
T Consensus 124 i~~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~ 198 (401)
T 4fdw_A 124 VKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPAS 198 (401)
T ss_dssp CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTT
T ss_pred cCEehHhhccc-CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechh
Confidence 345555566 4 36777777654 66664 34555 3577777765 5666653 477777777777776 456666655
Q ss_pred hhccCCCcEEeccCCccccccccc-ccccccccccceeeecCCCCCCcccccccccccceeEEecCCCCcchhhhhhhcc
Q 002129 155 MGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTLCSFVVGKDSGSGLRELKLLTQLRGTLCISNLENVKHIVDAEDAQL 233 (962)
Q Consensus 155 i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 233 (962)
.-...+|+.+.+..+ +..++.. |..+++|+.+.+-.. ++ ......|
T Consensus 199 aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-------------l~------------------~I~~~aF 245 (401)
T 4fdw_A 199 TFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-------------VS------------------TIGQEAF 245 (401)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-------------CC------------------EECTTTT
T ss_pred hEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-------------cc------------------Ccccccc
Confidence 333577777777644 5555544 667777776643110 00 0001112
Q ss_pred CCCCCCCcEEEEeecCCCCchhhhhHhhhcccCCCCCCcceEEEeccCCC-----CCCccccCCCCCCceEEEEecCCCC
Q 002129 234 DRKENLKELWLRWTLYGSYSREAETEMGVLDMLKPHTNLEQFCIKGYGGM-----KFPTWLGDSSFSKLVTLKFKNCDMC 308 (962)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~L~~~~~~ 308 (962)
.+ .+|+.+.+..+ . ....-.+|..+++|+.+.+.++... .++...+. .+++|+.+.+.++ .
T Consensus 246 ~~-~~L~~i~lp~~-i---------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~-~c~~L~~l~l~~~--i 311 (401)
T 4fdw_A 246 RE-SGITTVKLPNG-V---------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE-GCPKLARFEIPES--I 311 (401)
T ss_dssp TT-CCCSEEEEETT-C---------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT-TCTTCCEECCCTT--C
T ss_pred cc-CCccEEEeCCC-c---------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh-CCccCCeEEeCCc--e
Confidence 23 34555555211 0 0011134555566666666554432 34444443 5667777777643 2
Q ss_pred CCCC--CCCCCCCCCeEEEcCCCCceeeCccccCCCCCCCCCCcceeeccCcccccccccCCCCcccccCC-CccEEEec
Q 002129 309 TALP--SVGQLPSLKHLTVRGMSKVKRLGSEFYGDDSPIPFPRLETLRFEDLQEWEDSIPHGSSQGVERFP-KLRELRIL 385 (962)
Q Consensus 309 ~~l~--~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~L~~L~l~ 385 (962)
..++ .|..+++|+.+.|..+ ++.++...|.. . +|+.+.+.+.. .... .... +..++ .++.|.+-
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~-----~-~L~~l~l~~n~-~~~l-~~~~---F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNN-----T-GIKEVKVEGTT-PPQV-FEKV---WYGFPDDITVIRVP 378 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT--CCEECTTSSSS-----S-CCCEEEECCSS-CCBC-CCSS---CCCSCTTCCEEEEC
T ss_pred EEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCC-----C-CCCEEEEcCCC-Cccc-cccc---ccCCCCCccEEEeC
Confidence 2232 5667777777777543 55565444432 4 67777776531 1111 1111 23343 56777776
Q ss_pred cC
Q 002129 386 RC 387 (962)
Q Consensus 386 ~c 387 (962)
..
T Consensus 379 ~~ 380 (401)
T 4fdw_A 379 AE 380 (401)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.62 E-value=3e-06 Score=93.07 Aligned_cols=129 Identities=9% Similarity=0.047 Sum_probs=63.3
Q ss_pred cCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeecccccCcc
Q 002129 460 AGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSYCEGLV 539 (962)
Q Consensus 460 ~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~~~~l~ 539 (962)
...++..+.+|+++.+.++ ++. ....+|..+.+|+.+++.+ .++.+.... |... .+|+.+.+..+ +.
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~---I~~~aF~~c~~L~~i~lp~--~l~~I~~~a----F~~c-~~L~~i~~p~~--l~ 129 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VRE---IGEFAFENCSKLEIINIPD--SVKMIGRCT----FSGC-YALKSILLPLM--LK 129 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCE---ECTTTTTTCTTCCEECCCT--TCCEECTTT----TTTC-TTCCCCCCCTT--CC
T ss_pred HHHHhhCCCCceEEEeCCC-ccC---cchhHhhCCCCCcEEEeCC--CceEccchh----hccc-ccchhhcccCc--ee
Confidence 3446677788888888643 443 3456677888888888753 355554432 2111 45555554432 12
Q ss_pred ccC-ccCCCCCCccEEEecCCCCccccC--CCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecC
Q 002129 540 KLP-QSSLSLSSLREIEIYGCRSLVSFP--EVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISG 607 (962)
Q Consensus 540 ~~~-~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 607 (962)
.+. ..+..+..++..... ....+. .+..+++|+.+.+.++ +..++...+ ..+.+|+.+.+..
T Consensus 130 ~i~~~aF~~~~~~~~~~~~---~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F-~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPE---GVTVIGDEAFATCESLEYVSLPDS--METLHNGLF-SGCGKLKSIKLPR 194 (394)
T ss_dssp EECTTTTTTCCCSEEECCT---TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCBCCCCT
T ss_pred eecceeeecccccccccCc---cccccchhhhcccCCCcEEecCCc--cceeccccc-cCCCCceEEEcCC
Confidence 111 223333322222111 122222 2344566666666543 233444333 5556666666543
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.61 E-value=1.2e-06 Score=96.20 Aligned_cols=207 Identities=11% Similarity=0.066 Sum_probs=119.2
Q ss_pred cCccEEEecCCCCchhhhhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCCCCccccccccc
Q 002129 690 PSLKLLLVWGCSKLESIAEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAI 769 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l 769 (962)
.+|+.+.+.++- ...-..+|.++.+|+.+++..+ ........+.+++.|+.+.+..+ ...+....+...+|+.+.+
T Consensus 162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIII 237 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEE
T ss_pred CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEE
Confidence 456666665432 2223356777777777777653 22222345566777777766653 2333334444556776666
Q ss_pred ccccccccCc-cccCCCcccceeecCCCCCCCCCCC--CCCCCccceEeecCchhhhHHHHhccccccccCccceeeccc
Q 002129 770 YNCKRLEALP-KGLHNLKSLQELRIGKGVALPSLEE--DGLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMN 846 (962)
Q Consensus 770 ~~c~~l~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 846 (962)
...- ..+. ..+..+..|+.+.+..+. ..+.. ...+..++.+......... ..+..+.+|+.+.+.+
T Consensus 238 p~~~--~~i~~~~f~~~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 238 PDSF--TELGKSVFYGCTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYGSVIVPE-------KTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CTTC--CEECSSTTTTCSSCCEEEECCTT--CEECSCTTTTCTTCCEEEECSSEECT-------TTTTTCTTCCEEEECT
T ss_pred CCCc--eecccccccccccceeEEcCCCc--ceeeccccccccccceeccCceeecc-------cccccccccccccccc
Confidence 5432 2222 345667777777776542 22222 1334566666555432111 4567778888888766
Q ss_pred CCCCCccCCCCCCCCCCCccccCCCccceEeeccCCCCccccc-ccccCCCcCeEeccCCCCCccCCCCCCc--ccccee
Q 002129 847 CDDDMVSFPPKADDKGSGTVLPLPASLTYLRIEGFPNLERLTS-SIVDLQNLTGLVLGNCPKLKYFPEKGLP--SSLLQL 923 (962)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~--~sL~~L 923 (962)
+ +..+++ .++..+.+|+++++.+ .++.|.. .|.++.+|+++.+.. +++.+....+. ++|+.+
T Consensus 307 ~---i~~I~~--------~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 307 S---VKFIGE--------EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKV 371 (394)
T ss_dssp T---CCEECT--------TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEE
T ss_pred c---cceech--------hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEE
Confidence 2 344433 3456778888888864 4777764 456778888888765 37777776664 677777
Q ss_pred ecc
Q 002129 924 SIN 926 (962)
Q Consensus 924 ~i~ 926 (962)
++.
T Consensus 372 ~lp 374 (394)
T 4fs7_A 372 ELP 374 (394)
T ss_dssp EEE
T ss_pred EEC
Confidence 774
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=8.3e-08 Score=103.73 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=82.7
Q ss_pred EEEecCC-CCcccCccccCCCcCcEEEcCC-CcccccC-hhhhccCCccEEecCCCcchhccchhhhccCCCcEEeccCC
Q 002129 93 VFSLRGY-RILELPDSVGDLRYLRYLNLSG-TEIRTLP-ESVSKLYNLHSLLLEDCDRLEKLCADMGNLVKLHHLKNSNT 169 (962)
Q Consensus 93 ~L~L~~~-~i~~lp~~~~~L~~L~~L~Ls~-n~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~n 169 (962)
.++++++ +++.+|. +..+++|++|+|++ |.|+.+| ..|+.|++|++|+|++|...+..|..|++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688888 8999999 99999999999996 9999987 45999999999999996544444567899999999999999
Q ss_pred ccccccccc-ccccccccccceeeecCC
Q 002129 170 KSLEEMPVG-IGRLTCLQTLCSFVVGKD 196 (962)
Q Consensus 170 ~~~~~lp~~-~~~L~~L~~L~~~~~~~~ 196 (962)
. +..+|.+ +..++ |+.|++..+...
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8 7788876 44444 888877654433
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.36 E-value=4.3e-08 Score=106.05 Aligned_cols=154 Identities=18% Similarity=0.115 Sum_probs=103.1
Q ss_pred cCCceeEEEEEecCCCcccccccc----c-CCCceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCCCccc-
Q 002129 32 FSRYLRHLSYIRGDYDGVQRFGDL----Y-DIQHLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYRILEL- 104 (962)
Q Consensus 32 ~~~~~r~lsl~~~~~~~~~~~~~~----~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~l- 104 (962)
+.+.++.+++.++.+.... ...+ . ..++|+.|.+.++. +.......++ .+++|+.|+|++|.++..
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~ 142 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVK-CTVVAAVLGSGRHALDEVNLASCQ------LDPAGLRTLLPVFLRARKLGLQLNSLGPEA 142 (372)
T ss_dssp HHTTCCEEECTTSCCCHHH-HHHHHHHHSSCSSCEEEEECTTCC------CCHHHHHHTHHHHHTEEEEECCSSCCCHHH
T ss_pred HHhhCCEEEecCCCCCHHH-HHHHHHHHhhCCCCceEEEecCCC------CCHHHHHHHHHHHHhccHhhcCCCCCCHHH
Confidence 3457888888887765322 1111 1 23689999887653 2333344555 677899999999988743
Q ss_pred ----Cccc-cCCCcCcEEEcCCCcccc-----cChhhhccCCccEEecCCCcchh----ccchhhhccCCCcEEeccCCc
Q 002129 105 ----PDSV-GDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLLEDCDRLE----KLCADMGNLVKLHHLKNSNTK 170 (962)
Q Consensus 105 ----p~~~-~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~lp~~i~~L~~L~~L~l~~n~ 170 (962)
...+ ....+|++|+|++|.|+. ++..+...++|++|+|++|.... .+++.+...++|++|++++|.
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 2222 356789999999998864 45556788899999999965332 345667788899999999998
Q ss_pred cccc-----ccccccccccccccceeee
Q 002129 171 SLEE-----MPVGIGRLTCLQTLCSFVV 193 (962)
Q Consensus 171 ~~~~-----lp~~~~~L~~L~~L~~~~~ 193 (962)
++. ++..+...++|++|++..+
T Consensus 223 -i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 223 -AGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred -CCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 443 2333556678888866443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.35 E-value=1.6e-08 Score=109.53 Aligned_cols=156 Identities=16% Similarity=0.096 Sum_probs=86.1
Q ss_pred cCccEEEecCCCCchhhhhh----cc-CCCCcceEeecCCccccccCccc-cCCCCccEEEcccCCCcccCCCC-----C
Q 002129 690 PSLKLLLVWGCSKLESIAEM----LD-NNTSLEKINISGCGNLQTLPSGL-HNLCQLQEISIASCGNLVSSPEG-----G 758 (962)
Q Consensus 690 ~~L~~L~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~l~~~~~~-----~ 758 (962)
+.|++|++++|.+....... +. ..++|++|+|++|.+.......+ ..+++|++|+|++|. ++..+.. .
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHH
Confidence 67888888888876654333 33 23688888888887644322222 345678888888883 3321110 0
Q ss_pred -CCcccccccccccccccc----cCccccCCCcccceeecCCCCCCCCC-----CC-CCCCCccceEeecCchhhhHHHH
Q 002129 759 -LPCAKLAMLAIYNCKRLE----ALPKGLHNLKSLQELRIGKGVALPSL-----EE-DGLPTNLHVLLINGNMEIWKSMI 827 (962)
Q Consensus 759 -~~~~~L~~L~l~~c~~l~----~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~-~~~~~~L~~L~l~~~~~~~~~~~ 827 (962)
.+.++|++|++++|.... .++..+...++|++|++++|. ++.. .. ...+++|++|++++|.+......
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 123577777887776432 233344566777777777774 3211 00 11234566666666655443221
Q ss_pred hccccccccCccceeecccC
Q 002129 828 ERGRGFHRFSSLRQLTIMNC 847 (962)
Q Consensus 828 ~~~~~~~~l~~L~~L~l~~~ 847 (962)
.....+...++|++|++++|
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHhCCCCCEEeccCC
Confidence 11122334455666666665
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.24 E-value=8.1e-07 Score=95.03 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=62.8
Q ss_pred hhccCCCCcceEeecCCcc---------ccccCccccCCCCccEEEcccCCCcccCCCCCCCcccccccccccccccccC
Q 002129 708 EMLDNNTSLEKINISGCGN---------LQTLPSGLHNLCQLQEISIASCGNLVSSPEGGLPCAKLAMLAIYNCKRLEAL 778 (962)
Q Consensus 708 ~~~~~l~~L~~L~l~~~~~---------~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~ 778 (962)
.++..+++|+.|.+..... .+.+...+..+|+|++|+|++|..+. ++. ...++|+.|++..|......
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~--~~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK--KPRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS--CBCTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc--ccCCCCcEEEEecCCCChHH
Confidence 3345566777777654321 11233445667888888888874332 333 23678888888877643322
Q ss_pred cccc--CCCcccceeecCCCCC-------CCCC---CCCCCCCccceEeecCchhhh
Q 002129 779 PKGL--HNLKSLQELRIGKGVA-------LPSL---EEDGLPTNLHVLLINGNMEIW 823 (962)
Q Consensus 779 ~~~~--~~l~~L~~L~l~~~~~-------l~~~---~~~~~~~~L~~L~l~~~~~~~ 823 (962)
...+ ..+|+|++|+++.+.. +..+ .....+++|++|.+++|.+..
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~ 266 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence 2222 3688888888753211 1111 111235667777776666543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.21 E-value=0.00012 Score=80.26 Aligned_cols=126 Identities=17% Similarity=0.278 Sum_probs=76.1
Q ss_pred hhhccCCCCcceEeecCCccccccCccccCCCCccEEEcccCCCcccCCCCC-CCcccccccccccccccccCc-cccCC
Q 002129 707 AEMLDNNTSLEKINISGCGNLQTLPSGLHNLCQLQEISIASCGNLVSSPEGG-LPCAKLAMLAIYNCKRLEALP-KGLHN 784 (962)
Q Consensus 707 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~~~-~~~~~ 784 (962)
..+|.++..|+.+.+.... .......+.++++|+.+.+.. .+..++... ..|.+|+.+.+..+ +..++ ..|.+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~ 332 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAG 332 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT
T ss_pred cceeeecccccEEeccccc-ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhC
Confidence 3567888888888886532 222345667788888888863 466666653 34778888888653 44443 36788
Q ss_pred CcccceeecCCCCCCCCCCCC--CCCCccceEeecCchhhhHHHHhccccccccCccceeeccc
Q 002129 785 LKSLQELRIGKGVALPSLEED--GLPTNLHVLLINGNMEIWKSMIERGRGFHRFSSLRQLTIMN 846 (962)
Q Consensus 785 l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 846 (962)
+.+|+.+.+..+ ++.+... ..+++|+.+++.++.... ..+.....|+.+.+..
T Consensus 333 C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~-------~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 333 CEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW-------NAISTDSGLQNLPVAP 387 (394)
T ss_dssp CTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH-------HTCBCCCCC-------
T ss_pred CCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh-------hhhhccCCCCEEEeCC
Confidence 888888888543 5555442 446777777777765432 2345566666666654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=2.5e-06 Score=91.27 Aligned_cols=62 Identities=23% Similarity=0.191 Sum_probs=34.5
Q ss_pred cCCCCCCccEEEecCCCCccccCCCCCCCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecC
Q 002129 544 SSLSLSSLREIEIYGCRSLVSFPEVALPSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISG 607 (962)
Q Consensus 544 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 607 (962)
.+..+|+|+.|.|++|..+. ++.. ..++|++|++..|..............+|+|++|+|+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 34556788888887763332 3332 26778888887766221111111113567777777753
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=1.6e-06 Score=80.72 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=38.8
Q ss_pred CCCCCCccEEEecCCCCccccC--CCCC----CCCCcEEEEcCCCCCCCChhhhhcCCCCCccEEEecCCCCCCc
Q 002129 545 SLSLSSLREIEIYGCRSLVSFP--EVAL----PSKLKKIEISSCDALKSLPEAWMCDTNSSLEILEISGCDSLTY 613 (962)
Q Consensus 545 ~~~l~~L~~L~l~~~~~l~~~~--~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 613 (962)
+..+++|++|+|++|..+++-. .+.. .++|++|+|++|..+++.....+ ..+++|++|++++|+.++.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence 3456677777777776665422 1111 23566667766666665444433 3456666666666665554
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=0.00017 Score=79.01 Aligned_cols=122 Identities=7% Similarity=0.105 Sum_probs=77.1
Q ss_pred ccccCCC-ceeEEeeccccCCCCCCCCcccccccc-cCCcccEEEecCCC---CcccC-ccccCCCcCcEEEcCCCcccc
Q 002129 53 GDLYDIQ-HLRTFLPVILSNSKPGYLAPSMLPKLL-KLQSLRVFSLRGYR---ILELP-DSVGDLRYLRYLNLSGTEIRT 126 (962)
Q Consensus 53 ~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~---i~~lp-~~~~~L~~L~~L~Ls~n~i~~ 126 (962)
.+|.+++ .|+++.+-+. ...+.+..| ++.+|+.+.+..+. ++.+. .+|.++.+|+.+.+..+ ++.
T Consensus 57 ~aF~~~~~~L~sI~iP~s--------vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT--------VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp TTTTTCCSCCCEEEECTT--------CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred hhccCCCCcCEEEEECCC--------eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 3455664 4777766331 345666667 88888888887653 55663 56777888887776544 666
Q ss_pred cCh-hhhccCCccEEecCCCcchhccc-hhhhccCCCcEEeccCCccccccccc-cccccccccc
Q 002129 127 LPE-SVSKLYNLHSLLLEDCDRLEKLC-ADMGNLVKLHHLKNSNTKSLEEMPVG-IGRLTCLQTL 188 (962)
Q Consensus 127 lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L 188 (962)
++. .|..+.+|+.+.+.. ....++ ..+..+.+|+.+.+..+ +..+... |. -.+|+.+
T Consensus 128 I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i 187 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQI 187 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEE
T ss_pred ehhhhhhhhcccccccccc--eeeeecccceecccccccccccce--eeEecccccc-ccceeEE
Confidence 654 477888888888865 244444 34677888888887655 4444443 33 2445544
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=6e-06 Score=76.83 Aligned_cols=95 Identities=17% Similarity=0.250 Sum_probs=56.6
Q ss_pred cCccCCCCCCccEEEecCCCCcccc--CCCCCCCCCcEEEEcCCCCCCCChhhhhcCC---CCCccEEEecCCCCCCccc
Q 002129 541 LPQSSLSLSSLREIEIYGCRSLVSF--PEVALPSKLKKIEISSCDALKSLPEAWMCDT---NSSLEILEISGCDSLTYIA 615 (962)
Q Consensus 541 ~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---l~~L~~L~l~~c~~l~~~~ 615 (962)
+|.....-.+|++|++++|. +++. ..+..+++|++|++++|..+++.....++.. .++|++|+|++|+.+++-.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 34333334568888888876 4432 2345677888888888877766554444221 2467888888877776522
Q ss_pred --CCCCCCCCceEEecccCCCcc
Q 002129 616 --GVQLPPSLKRLKICHCDNIRT 636 (962)
Q Consensus 616 --~~~~~~~L~~L~l~~~~~l~~ 636 (962)
....+++|+.|++++|+.+++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 112345666666666665544
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=9.9e-06 Score=81.73 Aligned_cols=102 Identities=21% Similarity=0.126 Sum_probs=61.4
Q ss_pred cCCcccE--EEecCCCCcccCcc----ccCCCcCcEEEcCCCcccccC---hhhhccCCccEEecCCCcchhccchhhhc
Q 002129 87 KLQSLRV--FSLRGYRILELPDS----VGDLRYLRYLNLSGTEIRTLP---ESVSKLYNLHSLLLEDCDRLEKLCADMGN 157 (962)
Q Consensus 87 ~l~~L~~--L~L~~~~i~~lp~~----~~~L~~L~~L~Ls~n~i~~lp---~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 157 (962)
..+.|+. ++++.|....++.. ..++++|++|+|++|+|+.++ ..++.+++|++|+|++| .+..+ +++..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhh
Confidence 3444544 55666654433322 245677777777777776543 45667777888888774 34444 33444
Q ss_pred cC--CCcEEeccCCcccccccc-------cccccccccccce
Q 002129 158 LV--KLHHLKNSNTKSLEEMPV-------GIGRLTCLQTLCS 190 (962)
Q Consensus 158 L~--~L~~L~l~~n~~~~~lp~-------~~~~L~~L~~L~~ 190 (962)
++ +|++|++++|.+.+.+|. .+..+++|+.|+.
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 44 778888888774444442 2566777777754
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.85 E-value=0.0014 Score=71.18 Aligned_cols=43 Identities=9% Similarity=0.157 Sum_probs=26.1
Q ss_pred CCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchh
Q 002129 466 QLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAE 514 (962)
Q Consensus 466 ~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 514 (962)
...+|+++.+.+ ++......+|..+.+|+.++|.. .++.+...
T Consensus 44 ~~~~i~~v~ip~----~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~ 86 (379)
T 4h09_A 44 DRDRISEVRVNS----GITSIGEANFNSCYNMTKVTVAS--TVTSIGDG 86 (379)
T ss_dssp GGGGCSEEEECT----TEEEECTTTTTTCTTCCEEEECT--TCCEECTT
T ss_pred cccCCEEEEeCC----CccChHHHHhhCCCCCCEEEeCC--cceEechh
Confidence 345677777754 23444566677778888887753 35555444
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=9.3e-06 Score=78.02 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCcccEEEecCCCCcc-----cCccccCCCcCcEEEcCCCcccc-----cChhhhccCCccEEec
Q 002129 88 LQSLRVFSLRGYRILE-----LPDSVGDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLL 142 (962)
Q Consensus 88 l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L 142 (962)
.+.|++|+|++|.|.. +...+...+.|++|+|++|.|+. +.+.+...+.|++|++
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 3444555555444431 22233333444555555554442 2333444444555555
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=6.4e-06 Score=83.09 Aligned_cols=79 Identities=25% Similarity=0.350 Sum_probs=63.8
Q ss_pred cCCcccEEEecCCCCccc---CccccCCCcCcEEEcCCCcccccChhhhccC--CccEEecCCCcchhccc-------hh
Q 002129 87 KLQSLRVFSLRGYRILEL---PDSVGDLRYLRYLNLSGTEIRTLPESVSKLY--NLHSLLLEDCDRLEKLC-------AD 154 (962)
Q Consensus 87 ~l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~Ls~n~i~~lp~~i~~L~--~L~~L~L~~~~~~~~lp-------~~ 154 (962)
++++|++|+|++|.|+.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|...+.+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 688999999999998865 45677899999999999999987 3355555 99999999976656555 23
Q ss_pred hhccCCCcEEec
Q 002129 155 MGNLVKLHHLKN 166 (962)
Q Consensus 155 i~~L~~L~~L~l 166 (962)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678999999874
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.70 E-value=1.8e-05 Score=76.01 Aligned_cols=105 Identities=17% Similarity=0.154 Sum_probs=80.9
Q ss_pred cCCcccEEEecCC-CCcc-----cCccccCCCcCcEEEcCCCcccc-----cChhhhccCCccEEecCCCcchh----cc
Q 002129 87 KLQSLRVFSLRGY-RILE-----LPDSVGDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLLEDCDRLE----KL 151 (962)
Q Consensus 87 ~l~~L~~L~L~~~-~i~~-----lp~~~~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~l 151 (962)
..+.|++|+|++| .+.. +...+...++|++|+|++|.|+. +.+.+...++|++|+|++|..-. .+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 7889999999999 8863 45667888999999999999874 45567777899999999975332 24
Q ss_pred chhhhccCCCcEEec--cCCccccc-----ccccccccccccccceee
Q 002129 152 CADMGNLVKLHHLKN--SNTKSLEE-----MPVGIGRLTCLQTLCSFV 192 (962)
Q Consensus 152 p~~i~~L~~L~~L~l--~~n~~~~~-----lp~~~~~L~~L~~L~~~~ 192 (962)
.+.+...++|++|++ ++|. ++. +...+...++|++|++..
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 566788899999999 8888 443 233455668888887644
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.36 E-value=0.0038 Score=67.76 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=36.7
Q ss_pred ccCCCCCCCCCcceEEecccccceeecccCCccccCCCccEEEEcCCCCccccchhhhHHHHHHHHhhcceeeccc
Q 002129 459 LAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDVCSLKSLEIRSCPKLQSLVAEEEKDQQQQLYELLEYLRLSY 534 (962)
Q Consensus 459 ~~~~~~~~~~~L~~L~l~~n~~~~i~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~l~~~L~~L~ls~ 534 (962)
+...++..+.+|+++.+.++ ++.+ ...+|..+ +|+.+.+. ++++.+....+ .. .+|+.+.+.+
T Consensus 60 Ig~~aF~~C~~L~~I~lp~~-v~~I---g~~aF~~c-~l~~i~~~--~~l~~I~~~aF----~~--~~L~~i~lp~ 122 (379)
T 4h09_A 60 IGEANFNSCYNMTKVTVAST-VTSI---GDGAFADT-KLQSYTGM--ERVKKFGDYVF----QG--TDLDDFEFPG 122 (379)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCEE---CTTTTTTC-CCCEEEEC--TTCCEECTTTT----TT--CCCSEEECCT
T ss_pred hHHHHhhCCCCCCEEEeCCc-ceEe---chhhhcCC-CCceEECC--ceeeEecccee----cc--CCcccccCCC
Confidence 34456788999999999753 4444 45556665 67776664 34555444321 11 3456665543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.48 E-value=0.0038 Score=55.26 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=39.5
Q ss_pred cEEEecCCCCc--ccCccccCCCcCcEEEcCCCcccccChh-hhccCCccEEecCCCc
Q 002129 92 RVFSLRGYRIL--ELPDSVGDLRYLRYLNLSGTEIRTLPES-VSKLYNLHSLLLEDCD 146 (962)
Q Consensus 92 ~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~ 146 (962)
.+++.++++++ .+|..+. .+|++|+|++|+|+.+|.. |..+.+|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36788888887 7876543 3578888888888888754 6777888888887753
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.53 E-value=0.043 Score=48.40 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=44.1
Q ss_pred cEEEcCCCccc--ccChhhhccCCccEEecCCCcchhccchh-hhccCCCcEEeccCCc
Q 002129 115 RYLNLSGTEIR--TLPESVSKLYNLHSLLLEDCDRLEKLCAD-MGNLVKLHHLKNSNTK 170 (962)
Q Consensus 115 ~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~n~ 170 (962)
.+++.+++.++ .+|..+. .+|++|+|++ |.+..+|.+ |..+.+|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 47899999998 8987543 4799999999 567788765 7889999999999997
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.11 E-value=0.045 Score=51.79 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=52.0
Q ss_pred cCCcccEEEecCC-CCcc-----cCccccCCCcCcEEEcCCCcccc-----cChhhhccCCccEEecCCCcchh----cc
Q 002129 87 KLQSLRVFSLRGY-RILE-----LPDSVGDLRYLRYLNLSGTEIRT-----LPESVSKLYNLHSLLLEDCDRLE----KL 151 (962)
Q Consensus 87 ~l~~L~~L~L~~~-~i~~-----lp~~~~~L~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~l 151 (962)
.-+.|+.|+|+++ .|.. +-+.+..-+.|+.|+|++|.|++ |.+.+..-+.|++|+|++|..-. .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4567788888775 6652 34556666778888888887762 33445566778888888753222 12
Q ss_pred chhhhccCCCcEEeccCC
Q 002129 152 CADMGNLVKLHHLKNSNT 169 (962)
Q Consensus 152 p~~i~~L~~L~~L~l~~n 169 (962)
-+.+..-+.|++|+++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 233444566778877754
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.05 E-value=0.077 Score=50.20 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=75.6
Q ss_pred cCCCceeEEeeccccCCCCCCCCcc----cccccccCCcccEEEecCCCCcc-----cCccccCCCcCcEEEcCCCcccc
Q 002129 56 YDIQHLRTFLPVILSNSKPGYLAPS----MLPKLLKLQSLRVFSLRGYRILE-----LPDSVGDLRYLRYLNLSGTEIRT 126 (962)
Q Consensus 56 ~~~~~Lr~L~l~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~n~i~~ 126 (962)
..-+.|+.|.+..+.. +... +-..+..-+.|+.|+|++|.|.. +.+.+..-+.|++|+|++|.|+.
T Consensus 38 ~~n~~L~~L~L~~nn~-----igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKR-----VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCS-----SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCC-----CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 4567888888754311 1111 11222255789999999999973 34556677899999999999973
Q ss_pred -----cChhhhccCCccEEecCCCc--chh-----ccchhhhccCCCcEEeccCCc
Q 002129 127 -----LPESVSKLYNLHSLLLEDCD--RLE-----KLCADMGNLVKLHHLKNSNTK 170 (962)
Q Consensus 127 -----lp~~i~~L~~L~~L~L~~~~--~~~-----~lp~~i~~L~~L~~L~l~~n~ 170 (962)
|-+.+..-+.|+.|+|++|. .++ .+-+.+..-+.|+.|+++.+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 34456667789999998642 233 234456667899999998776
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=59.97 E-value=1.3 Score=50.04 Aligned_cols=18 Identities=0% Similarity=0.111 Sum_probs=16.5
Q ss_pred CcchHHHHHHHHhccceE
Q 002129 1 MHDLVSDLAQWAAGEMYF 18 (962)
Q Consensus 1 mHdlv~d~a~~~~~~~~~ 18 (962)
|||+|||+|+.++.++++
T Consensus 456 mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCHHHHHHHHTTSCTHHH
T ss_pred eChHHHHHHHHHHHHHHH
Confidence 999999999999998765
Done!