Query 002130
Match_columns 961
No_of_seqs 305 out of 1860
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 17:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1802 RNA helicase nonsense 100.0 2.3E-46 4.9E-51 425.5 27.6 368 557-960 238-664 (935)
2 KOG1803 DNA helicase [Replicat 100.0 2.3E-44 4.9E-49 409.4 15.0 313 613-947 56-435 (649)
3 TIGR00376 DNA helicase, putati 100.0 3.1E-41 6.7E-46 396.7 27.8 317 613-958 41-453 (637)
4 KOG1805 DNA replication helica 100.0 1.3E-36 2.7E-41 357.7 18.9 194 732-947 668-872 (1100)
5 KOG1804 RNA helicase [RNA proc 100.0 5.1E-37 1.1E-41 362.0 1.5 437 481-959 11-529 (775)
6 PF13086 AAA_11: AAA domain; P 100.0 5.8E-33 1.3E-37 277.6 13.5 177 733-923 1-236 (236)
7 PF13604 AAA_30: AAA domain; P 99.7 3.3E-18 7.1E-23 175.1 9.4 138 733-923 1-140 (196)
8 COG1112 Superfamily I DNA and 99.7 9.5E-17 2.1E-21 190.5 17.7 203 731-947 272-564 (767)
9 KOG1807 Helicases [Replication 99.7 1.8E-17 3.9E-22 193.2 10.8 94 850-947 695-797 (1025)
10 TIGR01447 recD exodeoxyribonuc 99.6 1E-15 2.2E-20 180.0 13.4 198 688-922 103-304 (586)
11 PRK10875 recD exonuclease V su 99.6 1.8E-15 4E-20 178.7 12.9 198 687-922 106-310 (615)
12 KOG1804 RNA helicase [RNA proc 99.5 3.3E-15 7.2E-20 178.3 1.4 253 676-940 63-327 (775)
13 TIGR01448 recD_rel helicase, p 99.5 2.2E-13 4.8E-18 163.9 12.7 140 731-922 321-461 (720)
14 TIGR02768 TraA_Ti Ti-type conj 99.4 2.6E-13 5.6E-18 163.9 12.0 135 732-923 351-486 (744)
15 PRK13889 conjugal transfer rel 99.4 8.4E-13 1.8E-17 162.6 11.8 134 732-922 345-479 (988)
16 PRK13826 Dtr system oriT relax 99.4 2.2E-12 4.8E-17 159.9 11.9 135 732-923 380-515 (1102)
17 PRK10919 ATP-dependent DNA hel 99.3 2.6E-12 5.7E-17 153.7 8.3 69 733-811 2-72 (672)
18 PRK14712 conjugal transfer nic 99.3 4.5E-12 9.7E-17 161.1 10.7 141 732-923 834-977 (1623)
19 KOG1806 DEAD box containing he 99.3 1.7E-12 3.7E-17 155.5 6.1 201 733-941 738-1062(1320)
20 PRK13709 conjugal transfer nic 99.3 8.5E-12 1.9E-16 160.2 11.4 140 732-923 966-1109(1747)
21 TIGR01075 uvrD DNA helicase II 99.3 9.6E-12 2.1E-16 149.5 10.6 70 732-811 3-74 (715)
22 PRK11773 uvrD DNA-dependent he 99.3 6.4E-12 1.4E-16 151.3 7.7 70 732-811 8-79 (721)
23 KOG1801 tRNA-splicing endonucl 99.2 8.6E-12 1.9E-16 152.2 8.4 99 853-954 514-627 (827)
24 TIGR01073 pcrA ATP-dependent D 99.2 1E-11 2.2E-16 149.5 6.3 70 732-811 3-74 (726)
25 TIGR02760 TraI_TIGR conjugativ 99.2 6.1E-11 1.3E-15 155.2 13.5 147 732-922 428-575 (1960)
26 TIGR01074 rep ATP-dependent DN 99.2 2.2E-11 4.7E-16 144.8 8.0 69 733-811 1-71 (664)
27 PF05970 PIF1: PIF1-like helic 99.2 7.6E-11 1.6E-15 131.7 10.7 63 733-802 1-66 (364)
28 TIGR02760 TraI_TIGR conjugativ 99.2 6.8E-11 1.5E-15 154.8 11.7 138 732-922 1018-1158(1960)
29 PF02562 PhoH: PhoH-like prote 99.1 2.2E-10 4.7E-15 119.8 11.2 170 733-941 4-178 (205)
30 smart00487 DEXDc DEAD-like hel 99.1 1.4E-09 3.1E-14 104.7 14.9 160 732-915 7-172 (201)
31 PF13245 AAA_19: Part of AAA d 99.1 2.5E-10 5.5E-15 101.8 6.6 60 740-806 1-62 (76)
32 cd00046 DEXDc DEAD-like helica 99.0 2.5E-09 5.4E-14 97.1 11.0 116 754-892 3-119 (144)
33 PRK11054 helD DNA helicase IV; 99.0 7.5E-10 1.6E-14 133.1 8.2 70 732-811 195-266 (684)
34 PRK10536 hypothetical protein; 99.0 3.9E-09 8.4E-14 113.9 11.7 152 732-917 58-216 (262)
35 COG0210 UvrD Superfamily I DNA 98.9 7.8E-09 1.7E-13 123.0 12.1 69 733-811 2-72 (655)
36 PF04851 ResIII: Type III rest 98.8 3.9E-09 8.4E-14 102.7 6.0 146 733-894 3-164 (184)
37 PF00580 UvrD-helicase: UvrD/R 98.8 7E-09 1.5E-13 109.5 6.2 66 734-809 1-68 (315)
38 PF00270 DEAD: DEAD/DEAH box h 98.8 4.9E-08 1.1E-12 94.7 11.2 128 736-890 2-133 (169)
39 cd00268 DEADc DEAD-box helicas 98.7 1.5E-07 3.2E-12 94.9 11.8 134 733-892 21-159 (203)
40 PF01443 Viral_helicase1: Vira 98.7 1.8E-08 3.9E-13 103.5 5.0 47 875-923 61-107 (234)
41 COG1875 NYN ribonuclease and A 98.6 5.8E-08 1.3E-12 108.5 8.0 187 729-945 224-416 (436)
42 PRK05580 primosome assembly pr 98.5 8.7E-07 1.9E-11 107.0 13.7 128 732-888 143-270 (679)
43 PHA02558 uvsW UvsW helicase; P 98.5 1.5E-06 3.3E-11 101.3 13.9 124 732-892 113-238 (501)
44 PRK11192 ATP-dependent RNA hel 98.5 1.3E-06 2.9E-11 99.0 12.8 130 733-890 23-161 (434)
45 COG4096 HsdR Type I site-speci 98.4 1.1E-06 2.4E-11 106.0 10.5 125 732-887 164-296 (875)
46 PTZ00424 helicase 45; Provisio 98.4 2.8E-06 6E-11 94.7 12.7 134 732-890 49-184 (401)
47 PF07652 Flavi_DEAD: Flaviviru 98.4 3E-06 6.5E-11 85.0 11.5 123 753-910 6-132 (148)
48 PRK11776 ATP-dependent RNA hel 98.3 5.1E-06 1.1E-10 95.2 14.2 131 732-890 25-161 (460)
49 PF09848 DUF2075: Uncharacteri 98.3 1.3E-06 2.8E-11 97.4 8.8 51 753-808 3-53 (352)
50 COG1061 SSL2 DNA or RNA helica 98.3 2.2E-06 4.9E-11 98.7 11.0 126 731-892 34-162 (442)
51 TIGR00603 rad25 DNA repair hel 98.3 1.9E-05 4.2E-10 96.0 18.3 148 732-914 254-412 (732)
52 PRK11448 hsdR type I restricti 98.3 2.9E-06 6.3E-11 107.4 11.2 134 732-889 412-553 (1123)
53 PRK10590 ATP-dependent RNA hel 98.3 5.5E-06 1.2E-10 95.3 12.1 133 732-891 22-164 (456)
54 TIGR01970 DEAH_box_HrpB ATP-de 98.3 6.4E-06 1.4E-10 101.5 13.4 143 738-911 6-153 (819)
55 TIGR00643 recG ATP-dependent D 98.3 4.6E-06 9.9E-11 100.0 11.8 129 733-887 235-368 (630)
56 PRK11634 ATP-dependent RNA hel 98.2 6.2E-06 1.4E-10 99.0 12.7 132 732-890 27-163 (629)
57 PRK11664 ATP-dependent RNA hel 98.2 6.7E-06 1.5E-10 101.3 13.1 144 738-912 9-157 (812)
58 PRK10917 ATP-dependent DNA hel 98.2 7.7E-06 1.7E-10 99.0 12.7 130 732-887 260-394 (681)
59 PRK01172 ski2-like helicase; P 98.2 1.1E-05 2.4E-10 97.1 13.9 128 732-890 21-149 (674)
60 TIGR00580 mfd transcription-re 98.2 1.5E-05 3.2E-10 99.5 15.1 130 732-887 450-584 (926)
61 KOG0989 Replication factor C, 98.2 2.8E-06 6E-11 93.8 7.7 50 873-923 126-179 (346)
62 COG1198 PriA Primosomal protei 98.2 4.3E-06 9.4E-11 101.4 9.6 124 732-885 197-322 (730)
63 PRK04537 ATP-dependent RNA hel 98.2 7.3E-06 1.6E-10 97.4 11.1 134 732-891 30-174 (572)
64 PRK04837 ATP-dependent RNA hel 98.2 7.4E-06 1.6E-10 93.0 10.4 132 732-891 29-172 (423)
65 PRK02362 ski2-like helicase; P 98.1 3.4E-05 7.3E-10 94.1 13.7 129 732-890 22-151 (737)
66 PRK01297 ATP-dependent RNA hel 98.1 2.7E-05 5.9E-10 89.9 12.3 132 733-890 109-251 (475)
67 PF00176 SNF2_N: SNF2 family N 98.1 7.9E-06 1.7E-10 86.2 7.2 157 737-919 1-178 (299)
68 cd00009 AAA The AAA+ (ATPases 98.0 5.2E-05 1.1E-09 69.7 11.6 58 735-799 3-60 (151)
69 COG3972 Superfamily I DNA and 98.0 1.2E-05 2.5E-10 93.1 8.4 156 733-916 162-334 (660)
70 TIGR00348 hsdR type I site-spe 98.0 6.2E-05 1.3E-09 91.2 14.0 132 734-892 239-381 (667)
71 PRK13766 Hef nuclease; Provisi 98.0 4.5E-05 9.8E-10 93.0 12.3 130 733-892 15-147 (773)
72 PRK10689 transcription-repair 98.0 4.4E-05 9.5E-10 97.2 12.4 130 732-887 599-733 (1147)
73 PTZ00110 helicase; Provisional 97.9 9E-05 2E-09 87.7 14.0 136 732-891 151-292 (545)
74 TIGR01587 cas3_core CRISPR-ass 97.9 3.3E-05 7.1E-10 85.2 9.2 53 754-811 2-54 (358)
75 PRK09401 reverse gyrase; Revie 97.9 5.5E-05 1.2E-09 96.6 11.8 132 733-890 80-215 (1176)
76 TIGR00595 priA primosomal prot 97.9 4E-05 8.7E-10 90.0 9.6 105 755-888 1-105 (505)
77 PLN00206 DEAD-box ATP-dependen 97.9 6.2E-05 1.3E-09 88.4 11.1 135 732-890 142-284 (518)
78 COG4098 comFA Superfamily II D 97.8 8.5E-05 1.8E-09 83.2 10.4 121 726-886 91-212 (441)
79 PRK00254 ski2-like helicase; P 97.8 0.00018 4E-09 87.6 13.9 129 732-890 22-152 (720)
80 TIGR01054 rgy reverse gyrase. 97.8 8.4E-05 1.8E-09 94.9 11.3 132 733-890 78-213 (1171)
81 PLN03025 replication factor C 97.8 9.8E-05 2.1E-09 81.4 10.5 42 734-781 17-58 (319)
82 COG0507 RecD ATP-dependent exo 97.7 4.3E-05 9.4E-10 92.4 7.0 137 732-924 318-454 (696)
83 TIGR03817 DECH_helic helicase/ 97.7 0.00015 3.3E-09 88.8 11.4 132 732-890 35-171 (742)
84 smart00489 DEXDc3 DEAD-like he 97.7 0.00029 6.3E-09 77.3 11.6 69 735-808 10-83 (289)
85 smart00488 DEXDc2 DEAD-like he 97.7 0.00029 6.3E-09 77.3 11.6 69 735-808 10-83 (289)
86 COG1702 PhoH Phosphate starvat 97.7 6.6E-05 1.4E-09 84.1 6.5 162 733-924 128-292 (348)
87 TIGR00614 recQ_fam ATP-depende 97.7 0.00016 3.4E-09 83.9 9.8 127 732-890 10-141 (470)
88 KOG0260 RNA polymerase II, lar 97.6 0.0014 3E-08 81.6 17.7 39 76-115 1432-1470(1605)
89 TIGR00604 rad3 DNA repair heli 97.6 0.00019 4.1E-09 87.4 10.5 70 735-808 12-82 (705)
90 PRK14701 reverse gyrase; Provi 97.6 0.00023 5.1E-09 93.3 11.3 133 733-890 79-214 (1638)
91 TIGR01967 DEAH_box_HrpA ATP-de 97.6 0.00031 6.6E-09 90.1 11.8 146 738-913 71-220 (1283)
92 PRK04296 thymidine kinase; Pro 97.6 8.5E-05 1.8E-09 76.4 5.3 42 874-916 76-118 (190)
93 PHA02653 RNA helicase NPH-II; 97.6 0.00062 1.3E-08 82.8 13.5 66 736-809 167-245 (675)
94 COG2256 MGS1 ATPase related to 97.6 0.00016 3.4E-09 82.6 7.8 43 876-922 104-148 (436)
95 KOG0991 Replication factor C, 97.6 0.00025 5.5E-09 76.4 8.7 147 732-940 29-183 (333)
96 PRK13767 ATP-dependent helicas 97.5 0.00013 2.8E-09 90.9 7.3 68 733-808 32-106 (876)
97 COG1204 Superfamily II helicas 97.5 0.00039 8.4E-09 85.6 11.2 129 733-891 31-161 (766)
98 COG0513 SrmB Superfamily II DN 97.5 0.00074 1.6E-08 79.7 13.1 132 733-891 51-189 (513)
99 TIGR02785 addA_Gpos recombinat 97.5 0.00016 3.4E-09 93.1 7.6 66 734-809 2-68 (1232)
100 TIGR03117 cas_csf4 CRISPR-asso 97.5 0.00022 4.7E-09 86.1 8.3 66 737-807 1-67 (636)
101 COG1111 MPH1 ERCC4-like helica 97.5 0.00048 1E-08 80.3 10.6 133 735-898 17-153 (542)
102 PRK11131 ATP-dependent RNA hel 97.4 0.00065 1.4E-08 87.1 11.8 146 738-913 78-227 (1294)
103 PRK04914 ATP-dependent helicas 97.4 0.001 2.3E-08 83.6 13.3 163 732-919 151-321 (956)
104 KOG0354 DEAD-box like helicase 97.4 0.001 2.2E-08 81.0 11.8 133 731-891 60-194 (746)
105 PRK09694 helicase Cas3; Provis 97.3 0.001 2.2E-08 83.0 10.9 69 732-808 285-353 (878)
106 PF13401 AAA_22: AAA domain; P 97.3 0.0003 6.4E-09 66.0 4.8 52 753-809 6-61 (131)
107 PRK14958 DNA polymerase III su 97.3 0.00079 1.7E-08 79.5 9.2 143 735-923 21-169 (509)
108 PRK08181 transposase; Validate 97.3 0.001 2.2E-08 72.8 9.4 64 732-807 86-150 (269)
109 KOG4284 DEAD box protein [Tran 97.3 0.00018 3.9E-09 85.4 3.6 135 735-893 49-184 (980)
110 PRK11057 ATP-dependent DNA hel 97.3 0.00089 1.9E-08 80.4 9.6 64 732-808 24-87 (607)
111 PRK14956 DNA polymerase III su 97.3 0.00077 1.7E-08 79.1 8.7 48 875-923 120-171 (484)
112 PRK14712 conjugal transfer nic 97.2 0.0016 3.5E-08 85.1 11.8 65 733-805 281-346 (1623)
113 PRK14962 DNA polymerase III su 97.2 0.00056 1.2E-08 80.1 6.7 42 735-782 19-61 (472)
114 PRK12402 replication factor C 97.2 0.0032 6.9E-08 68.6 11.8 42 734-781 19-60 (337)
115 TIGR01389 recQ ATP-dependent D 97.2 0.0016 3.5E-08 77.6 10.3 127 732-888 12-139 (591)
116 TIGR03015 pepcterm_ATPase puta 97.2 0.0021 4.5E-08 68.0 10.0 41 735-781 25-67 (269)
117 COG1200 RecG RecG-like helicas 97.1 0.0016 3.6E-08 78.3 9.9 131 732-886 261-394 (677)
118 PRK06526 transposase; Provisio 97.1 0.0018 3.9E-08 70.1 9.1 53 732-791 79-131 (254)
119 COG0470 HolB ATPase involved i 97.1 0.0033 7.3E-08 67.7 11.0 49 874-923 107-159 (325)
120 KOG0331 ATP-dependent RNA heli 97.1 0.0013 2.7E-08 77.7 8.2 137 733-890 113-253 (519)
121 TIGR03158 cas3_cyano CRISPR-as 97.1 0.0037 7.9E-08 70.4 11.4 63 737-810 1-63 (357)
122 PRK07994 DNA polymerase III su 97.0 0.002 4.2E-08 78.2 9.5 48 875-923 118-169 (647)
123 PRK00411 cdc6 cell division co 97.0 0.0018 3.9E-08 72.6 8.5 69 736-809 36-109 (394)
124 TIGR01407 dinG_rel DnaQ family 97.0 0.0021 4.6E-08 80.0 9.9 65 734-805 246-311 (850)
125 PRK14088 dnaA chromosomal repl 97.0 0.0023 5.1E-08 74.2 9.6 54 735-794 113-168 (440)
126 TIGR02621 cas3_GSU0051 CRISPR- 97.0 0.001 2.2E-08 82.4 7.0 68 734-808 16-84 (844)
127 PRK07246 bifunctional ATP-depe 97.0 0.002 4.4E-08 80.0 9.5 63 733-805 245-310 (820)
128 COG1643 HrpA HrpA-like helicas 97.0 0.003 6.5E-08 78.5 10.5 121 737-887 53-173 (845)
129 PRK14873 primosome assembly pr 97.0 0.0021 4.6E-08 78.2 9.1 105 754-886 163-267 (665)
130 PRK14974 cell division protein 97.0 0.0068 1.5E-07 68.4 12.3 43 753-802 142-187 (336)
131 PRK12323 DNA polymerase III su 97.0 0.002 4.3E-08 78.0 8.5 48 875-923 123-174 (700)
132 PLN03142 Probable chromatin-re 96.9 0.0048 1E-07 78.3 11.8 161 732-916 168-332 (1033)
133 PRK08074 bifunctional ATP-depe 96.9 0.0048 1E-07 77.7 11.5 64 734-805 258-324 (928)
134 PRK12899 secA preprotein trans 96.9 0.0028 6.1E-08 79.0 9.2 143 734-916 93-245 (970)
135 PRK14949 DNA polymerase III su 96.9 0.0014 3E-08 81.5 6.4 48 875-923 118-169 (944)
136 PRK14960 DNA polymerase III su 96.9 0.002 4.2E-08 78.2 7.4 144 735-923 20-168 (702)
137 PRK14969 DNA polymerase III su 96.9 0.0054 1.2E-07 72.9 10.9 48 875-923 118-169 (527)
138 PRK13709 conjugal transfer nic 96.8 0.0069 1.5E-07 80.2 12.5 126 735-917 415-541 (1747)
139 PRK13342 recombination factor 96.8 0.0038 8.3E-08 71.5 9.1 33 741-779 26-58 (413)
140 PRK11747 dinG ATP-dependent DN 96.8 0.003 6.6E-08 77.2 8.7 65 735-805 27-97 (697)
141 PRK13341 recombination factor 96.8 0.0027 5.9E-08 78.0 8.2 34 741-780 42-75 (725)
142 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0049 1.1E-07 62.9 8.7 125 753-913 4-137 (159)
143 PF05127 Helicase_RecD: Helica 96.8 0.00048 1E-08 71.3 1.4 48 755-808 1-48 (177)
144 PRK00440 rfc replication facto 96.8 0.011 2.5E-07 63.8 11.9 39 735-779 22-60 (319)
145 PRK07003 DNA polymerase III su 96.8 0.0041 8.9E-08 76.4 9.3 48 875-923 118-169 (830)
146 PRK08691 DNA polymerase III su 96.8 0.0037 8E-08 76.2 8.7 48 875-923 118-169 (709)
147 COG1110 Reverse gyrase [DNA re 96.8 0.0039 8.5E-08 77.7 8.9 126 734-885 83-212 (1187)
148 TIGR03714 secA2 accessory Sec 96.8 0.0046 9.9E-08 76.1 9.5 146 733-915 68-224 (762)
149 PRK14964 DNA polymerase III su 96.7 0.0046 9.9E-08 73.0 9.1 143 735-923 18-166 (491)
150 KOG0987 DNA helicase PIF1/RRM3 96.7 0.004 8.6E-08 74.2 8.4 61 732-799 116-178 (540)
151 cd01120 RecA-like_NTPases RecA 96.7 0.0054 1.2E-07 58.4 7.5 40 754-800 2-41 (165)
152 PRK07764 DNA polymerase III su 96.7 0.0046 9.9E-08 77.0 8.8 42 735-782 20-62 (824)
153 PHA03333 putative ATPase subun 96.7 0.013 2.9E-07 71.2 12.4 160 739-918 175-336 (752)
154 TIGR00609 recB exodeoxyribonuc 96.7 0.0017 3.6E-08 83.0 5.2 53 752-809 10-65 (1087)
155 PRK07940 DNA polymerase III su 96.6 0.0034 7.3E-08 72.2 6.9 49 875-923 116-167 (394)
156 PF02399 Herpes_ori_bp: Origin 96.6 0.0053 1.2E-07 75.5 8.9 52 751-808 49-100 (824)
157 PRK05896 DNA polymerase III su 96.6 0.006 1.3E-07 73.5 8.9 43 735-783 21-64 (605)
158 PRK04195 replication factor C 96.6 0.011 2.5E-07 69.1 11.0 42 732-779 16-61 (482)
159 TIGR02397 dnaX_nterm DNA polym 96.6 0.0071 1.5E-07 66.7 8.8 45 732-782 16-61 (355)
160 PRK14951 DNA polymerase III su 96.6 0.008 1.7E-07 72.8 9.5 48 875-923 123-174 (618)
161 PHA02244 ATPase-like protein 96.5 0.0069 1.5E-07 69.4 8.2 62 877-941 181-256 (383)
162 PRK14087 dnaA chromosomal repl 96.5 0.017 3.8E-07 67.4 11.6 37 752-794 142-179 (450)
163 PRK05563 DNA polymerase III su 96.5 0.011 2.5E-07 70.6 10.3 48 875-923 118-169 (559)
164 PRK12898 secA preprotein trans 96.5 0.013 2.8E-07 71.3 10.8 64 733-808 103-166 (656)
165 PRK14952 DNA polymerase III su 96.5 0.0092 2E-07 71.9 9.4 48 875-923 117-168 (584)
166 PRK12422 chromosomal replicati 96.5 0.01 2.2E-07 69.3 9.4 35 752-793 142-176 (445)
167 PRK14963 DNA polymerase III su 96.4 0.011 2.5E-07 69.9 9.7 48 875-923 115-166 (504)
168 PRK14957 DNA polymerase III su 96.4 0.0089 1.9E-07 71.5 8.9 42 735-782 21-63 (546)
169 PTZ00112 origin recognition co 96.4 0.01 2.3E-07 73.8 9.3 41 735-780 760-805 (1164)
170 PRK05986 cob(I)alamin adenolsy 96.4 0.011 2.4E-07 62.1 8.3 125 752-912 23-156 (191)
171 cd03115 SRP The signal recogni 96.4 0.022 4.9E-07 56.9 10.1 40 875-914 81-123 (173)
172 PF00580 UvrD-helicase: UvrD/R 96.3 0.002 4.4E-08 68.3 2.5 59 875-941 255-313 (315)
173 PRK14722 flhF flagellar biosyn 96.3 0.01 2.3E-07 67.9 8.2 37 752-793 138-174 (374)
174 PF00448 SRP54: SRP54-type pro 96.3 0.0077 1.7E-07 62.9 6.6 37 753-796 3-40 (196)
175 PRK14948 DNA polymerase III su 96.3 0.0098 2.1E-07 72.1 8.4 42 735-782 21-63 (620)
176 KOG0345 ATP-dependent RNA heli 96.3 0.031 6.7E-07 65.4 11.8 132 732-890 27-171 (567)
177 TIGR00678 holB DNA polymerase 96.3 0.0094 2E-07 60.5 6.9 48 875-922 95-145 (188)
178 PRK14965 DNA polymerase III su 96.3 0.014 3E-07 70.2 9.3 42 734-781 20-62 (576)
179 PRK12723 flagellar biosynthesi 96.3 0.023 5E-07 65.4 10.8 51 752-808 175-230 (388)
180 KOG0743 AAA+-type ATPase [Post 96.3 0.0066 1.4E-07 70.5 6.3 34 852-885 336-370 (457)
181 KOG0335 ATP-dependent RNA heli 96.2 0.0091 2E-07 70.0 7.3 135 732-890 95-240 (482)
182 KOG0342 ATP-dependent RNA heli 96.2 0.0066 1.4E-07 70.9 6.0 130 732-891 103-245 (543)
183 PLN03137 ATP-dependent DNA hel 96.2 0.013 2.7E-07 74.8 8.9 65 731-808 458-522 (1195)
184 COG1201 Lhr Lhr-like helicases 96.2 0.016 3.4E-07 72.0 9.4 131 732-889 21-162 (814)
185 KOG0952 DNA/RNA helicase MER3/ 96.2 0.021 4.5E-07 71.6 10.3 133 732-891 109-253 (1230)
186 PRK10876 recB exonuclease V su 96.2 0.005 1.1E-07 79.4 5.2 52 753-809 19-80 (1181)
187 PRK14961 DNA polymerase III su 96.2 0.014 3E-07 66.1 8.1 49 875-923 118-169 (363)
188 PRK14970 DNA polymerase III su 96.2 0.031 6.7E-07 62.7 10.9 42 734-781 21-63 (367)
189 PRK14086 dnaA chromosomal repl 96.2 0.035 7.5E-07 67.3 11.8 38 752-794 315-352 (617)
190 PRK08451 DNA polymerase III su 96.2 0.025 5.5E-07 67.5 10.5 48 875-923 116-167 (535)
191 PRK07952 DNA replication prote 96.2 0.0088 1.9E-07 64.7 6.2 61 735-807 78-143 (244)
192 PRK06647 DNA polymerase III su 96.1 0.018 3.8E-07 69.2 9.2 43 734-782 20-63 (563)
193 PRK14959 DNA polymerase III su 96.1 0.014 3E-07 70.8 8.3 42 735-782 21-63 (624)
194 COG1205 Distinct helicase fami 96.1 0.025 5.4E-07 70.9 10.8 127 733-886 70-205 (851)
195 TIGR01650 PD_CobS cobaltochela 96.1 0.011 2.3E-07 66.7 6.9 42 732-781 47-88 (327)
196 TIGR02784 addA_alphas double-s 96.1 0.0063 1.4E-07 78.1 5.5 53 753-810 12-65 (1141)
197 PRK00771 signal recognition pa 96.1 0.023 5E-07 66.3 9.5 34 753-793 97-130 (437)
198 PF13173 AAA_14: AAA domain 96.1 0.022 4.8E-07 54.7 7.9 35 876-912 61-97 (128)
199 smart00382 AAA ATPases associa 96.1 0.0034 7.4E-08 56.8 2.1 37 877-913 79-125 (148)
200 COG4889 Predicted helicase [Ge 96.0 0.019 4E-07 70.9 8.7 145 732-889 160-317 (1518)
201 KOG0328 Predicted ATP-dependen 96.0 0.0073 1.6E-07 66.8 4.8 150 735-912 51-208 (400)
202 TIGR00963 secA preprotein tran 96.0 0.02 4.2E-07 70.6 8.6 132 736-898 59-198 (745)
203 PRK07133 DNA polymerase III su 95.9 0.02 4.3E-07 70.4 8.2 48 875-923 117-168 (725)
204 PRK09200 preprotein translocas 95.9 0.023 4.9E-07 70.6 8.6 124 755-914 95-227 (790)
205 PF00308 Bac_DnaA: Bacterial d 95.9 0.043 9.4E-07 58.1 9.6 56 734-794 15-72 (219)
206 PRK09111 DNA polymerase III su 95.8 0.036 7.8E-07 67.1 10.1 43 734-782 28-71 (598)
207 PRK08058 DNA polymerase III su 95.8 0.025 5.3E-07 63.3 8.2 48 875-923 109-160 (329)
208 KOG0920 ATP-dependent RNA heli 95.8 0.039 8.5E-07 69.2 10.5 144 737-910 176-325 (924)
209 PF13177 DNA_pol3_delta2: DNA 95.8 0.086 1.9E-06 53.3 11.2 48 875-923 101-152 (162)
210 TIGR02640 gas_vesic_GvpN gas v 95.8 0.011 2.4E-07 63.8 5.1 52 735-795 4-56 (262)
211 PF05496 RuvB_N: Holliday junc 95.8 0.0055 1.2E-07 66.0 2.7 26 751-782 50-75 (233)
212 PRK14950 DNA polymerase III su 95.8 0.021 4.6E-07 68.6 8.0 42 735-782 21-63 (585)
213 cd01124 KaiC KaiC is a circadi 95.8 0.012 2.7E-07 58.6 4.9 47 754-808 2-48 (187)
214 PRK08084 DNA replication initi 95.8 0.017 3.7E-07 61.5 6.2 54 734-794 28-81 (235)
215 TIGR00708 cobA cob(I)alamin ad 95.7 0.047 1E-06 56.7 9.1 36 752-794 6-41 (173)
216 PF00004 AAA: ATPase family as 95.7 0.0049 1.1E-07 57.3 1.7 22 754-781 1-22 (132)
217 PRK13909 putative recombinatio 95.7 0.013 2.8E-07 73.8 5.8 50 755-809 2-52 (910)
218 PRK09112 DNA polymerase III su 95.7 0.077 1.7E-06 60.3 11.3 49 874-923 139-191 (351)
219 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.036 7.8E-07 57.2 8.0 58 733-797 20-77 (226)
220 PRK07471 DNA polymerase III su 95.7 0.088 1.9E-06 60.2 11.7 49 874-923 139-191 (365)
221 COG1074 RecB ATP-dependent exo 95.6 0.012 2.6E-07 75.8 5.3 52 753-809 18-72 (1139)
222 COG1203 CRISPR-associated heli 95.6 0.03 6.6E-07 69.0 8.5 78 727-809 189-269 (733)
223 PF07728 AAA_5: AAA domain (dy 95.6 0.01 2.2E-07 57.1 3.5 23 753-781 1-23 (139)
224 PRK12377 putative replication 95.6 0.037 7.9E-07 60.2 8.1 51 735-792 80-135 (248)
225 KOG0330 ATP-dependent RNA heli 95.6 0.022 4.8E-07 65.3 6.5 158 733-914 83-245 (476)
226 PRK06893 DNA replication initi 95.6 0.034 7.3E-07 59.0 7.5 33 753-793 41-74 (229)
227 PF03237 Terminase_6: Terminas 95.5 0.064 1.4E-06 57.8 9.6 45 755-804 1-46 (384)
228 KOG0350 DEAD-box ATP-dependent 95.5 0.058 1.2E-06 63.6 9.6 129 753-898 185-319 (620)
229 PRK05703 flhF flagellar biosyn 95.5 0.15 3.1E-06 59.5 12.8 39 753-796 223-262 (424)
230 COG1419 FlhF Flagellar GTP-bin 95.4 0.026 5.7E-07 65.1 6.6 38 751-793 203-240 (407)
231 PRK06645 DNA polymerase III su 95.4 0.048 1E-06 64.8 8.6 25 752-782 44-68 (507)
232 TIGR02928 orc1/cdc6 family rep 95.3 0.036 7.8E-07 61.5 6.9 42 735-781 20-65 (365)
233 TIGR01547 phage_term_2 phage t 95.3 0.067 1.5E-06 60.7 9.1 133 753-915 3-142 (396)
234 PRK08903 DnaA regulatory inact 95.3 0.034 7.4E-07 58.1 6.2 53 733-792 23-76 (227)
235 PRK10867 signal recognition pa 95.3 0.12 2.5E-06 60.6 11.2 41 753-799 102-143 (433)
236 PF13191 AAA_16: AAA ATPase do 95.3 0.028 6.1E-07 55.4 5.3 43 736-783 6-51 (185)
237 KOG0744 AAA+-type ATPase [Post 95.2 0.011 2.3E-07 66.7 2.6 24 753-782 179-202 (423)
238 PRK05707 DNA polymerase III su 95.2 0.06 1.3E-06 60.6 8.5 49 875-923 105-156 (328)
239 KOG0389 SNF2 family DNA-depend 95.2 0.044 9.6E-07 67.2 7.6 161 732-916 398-565 (941)
240 PRK08116 hypothetical protein; 95.2 0.061 1.3E-06 58.8 8.0 52 735-793 90-149 (268)
241 PRK06305 DNA polymerase III su 95.2 0.078 1.7E-06 62.1 9.4 46 875-922 120-170 (451)
242 PRK13104 secA preprotein trans 95.1 0.053 1.1E-06 68.0 8.3 123 755-914 99-230 (896)
243 COG1197 Mfd Transcription-repa 95.1 0.14 3E-06 65.5 11.7 131 732-886 593-726 (1139)
244 COG1222 RPT1 ATP-dependent 26S 95.1 0.0068 1.5E-07 68.9 0.4 41 753-808 187-227 (406)
245 TIGR00635 ruvB Holliday juncti 95.0 0.029 6.3E-07 60.9 5.0 40 736-781 10-54 (305)
246 TIGR03689 pup_AAA proteasome A 95.0 0.21 4.5E-06 59.7 12.2 24 753-782 218-241 (512)
247 KOG0990 Replication factor C, 94.9 0.03 6.4E-07 63.1 4.9 39 876-915 131-172 (360)
248 KOG4439 RNA polymerase II tran 94.9 0.073 1.6E-06 64.8 8.3 162 733-917 325-505 (901)
249 KOG0390 DNA repair protein, SN 94.9 0.26 5.7E-06 61.2 13.2 165 732-916 237-417 (776)
250 KOG0922 DEAH-box RNA helicase 94.9 0.11 2.4E-06 63.0 9.7 53 752-810 67-119 (674)
251 COG0714 MoxR-like ATPases [Gen 94.9 0.026 5.7E-07 62.7 4.4 49 752-808 44-92 (329)
252 KOG0385 Chromatin remodeling c 94.9 0.072 1.6E-06 65.3 8.2 161 732-915 166-329 (971)
253 PRK05564 DNA polymerase III su 94.9 0.16 3.4E-06 56.1 10.4 41 735-781 9-50 (313)
254 PRK14953 DNA polymerase III su 94.9 0.1 2.3E-06 61.7 9.5 38 739-782 25-63 (486)
255 COG2255 RuvB Holliday junction 94.9 0.1 2.2E-06 58.3 8.7 56 751-816 52-107 (332)
256 PF01695 IstB_IS21: IstB-like 94.8 0.058 1.2E-06 55.5 6.4 43 753-807 49-91 (178)
257 PHA02533 17 large terminase pr 94.8 0.4 8.7E-06 57.6 14.2 148 732-914 58-210 (534)
258 PRK11889 flhF flagellar biosyn 94.8 0.051 1.1E-06 63.2 6.4 45 752-803 242-289 (436)
259 KOG0343 RNA Helicase [RNA proc 94.7 0.075 1.6E-06 63.3 7.6 129 732-891 90-230 (758)
260 COG1484 DnaC DNA replication p 94.7 0.06 1.3E-06 58.5 6.5 54 734-794 84-141 (254)
261 TIGR02881 spore_V_K stage V sp 94.7 0.018 3.8E-07 62.0 2.4 25 752-782 43-67 (261)
262 TIGR03499 FlhF flagellar biosy 94.7 0.081 1.8E-06 58.1 7.5 36 753-793 196-231 (282)
263 PRK00149 dnaA chromosomal repl 94.7 0.11 2.4E-06 60.4 8.9 56 735-795 130-187 (450)
264 KOG0348 ATP-dependent RNA heli 94.6 0.12 2.7E-06 61.4 9.0 131 733-891 159-302 (708)
265 COG1199 DinG Rad3-related DNA 94.6 0.078 1.7E-06 64.0 7.6 71 732-808 14-85 (654)
266 TIGR01425 SRP54_euk signal rec 94.6 0.21 4.6E-06 58.4 10.8 38 753-797 102-140 (429)
267 PRK08769 DNA polymerase III su 94.6 0.12 2.6E-06 58.3 8.5 48 875-923 112-163 (319)
268 TIGR03345 VI_ClpV1 type VI sec 94.5 0.075 1.6E-06 66.8 7.6 35 742-782 199-233 (852)
269 COG0556 UvrB Helicase subunit 94.4 0.23 5.1E-06 59.2 10.7 73 736-818 15-89 (663)
270 COG1435 Tdk Thymidine kinase [ 94.4 0.19 4.1E-06 53.4 9.0 34 877-911 83-117 (201)
271 PRK09751 putative ATP-dependen 94.3 0.12 2.6E-06 68.2 8.8 114 756-890 1-138 (1490)
272 TIGR01241 FtsH_fam ATP-depende 94.3 0.062 1.3E-06 63.2 5.8 47 727-779 52-110 (495)
273 smart00763 AAA_PrkA PrkA AAA d 94.2 0.083 1.8E-06 60.5 6.4 27 751-783 78-104 (361)
274 TIGR02880 cbbX_cfxQ probable R 94.2 0.026 5.7E-07 62.0 2.4 25 753-783 60-84 (284)
275 TIGR00959 ffh signal recogniti 94.2 0.3 6.4E-06 57.2 11.0 40 753-798 101-141 (428)
276 CHL00195 ycf46 Ycf46; Provisio 94.2 0.12 2.6E-06 61.4 7.8 24 752-781 260-283 (489)
277 PRK09183 transposase/IS protei 94.2 0.07 1.5E-06 58.0 5.5 55 732-793 83-137 (259)
278 PRK00080 ruvB Holliday junctio 94.2 0.047 1E-06 60.6 4.3 42 734-781 29-75 (328)
279 KOG2028 ATPase related to the 94.2 0.052 1.1E-06 62.2 4.6 59 738-803 149-207 (554)
280 PHA03368 DNA packaging termina 94.2 0.52 1.1E-05 57.9 13.0 128 754-913 257-389 (738)
281 COG0467 RAD55 RecA-superfamily 94.1 0.079 1.7E-06 56.8 5.7 56 743-805 13-70 (260)
282 KOG0387 Transcription-coupled 94.1 0.23 5E-06 61.3 9.9 170 732-916 204-378 (923)
283 PRK08727 hypothetical protein; 94.0 0.14 3E-06 54.6 7.3 36 751-793 41-76 (233)
284 TIGR00631 uvrb excinuclease AB 94.0 0.12 2.5E-06 63.4 7.5 75 734-818 10-86 (655)
285 PRK10416 signal recognition pa 93.9 0.37 8E-06 54.3 10.7 37 753-796 116-153 (318)
286 KOG0781 Signal recognition par 93.9 0.27 5.8E-06 58.1 9.6 36 752-794 377-414 (587)
287 PRK13531 regulatory ATPase Rav 93.9 0.059 1.3E-06 63.9 4.4 39 738-782 25-64 (498)
288 PRK03992 proteasome-activating 93.8 0.067 1.4E-06 61.3 4.8 47 729-781 130-189 (389)
289 TIGR00362 DnaA chromosomal rep 93.8 0.17 3.6E-06 57.9 7.9 37 752-793 137-173 (405)
290 PRK13833 conjugal transfer pro 93.8 0.1 2.3E-06 58.8 6.0 52 733-791 128-179 (323)
291 PHA00350 putative assembly pro 93.7 0.21 4.6E-06 57.9 8.5 59 753-820 3-63 (399)
292 COG1474 CDC6 Cdc6-related prot 93.7 0.16 3.4E-06 58.2 7.4 71 735-810 22-97 (366)
293 PF01078 Mg_chelatase: Magnesi 93.7 0.055 1.2E-06 57.6 3.5 42 733-782 6-47 (206)
294 TIGR03877 thermo_KaiC_1 KaiC d 93.7 0.12 2.6E-06 55.0 6.0 60 741-808 9-70 (237)
295 PRK12727 flagellar biosynthesi 93.7 0.11 2.5E-06 62.2 6.4 36 752-792 351-386 (559)
296 PHA03372 DNA packaging termina 93.6 0.14 3E-06 62.0 6.9 134 758-920 209-346 (668)
297 cd01983 Fer4_NifH The Fer4_Nif 93.6 0.39 8.4E-06 41.7 8.1 33 754-793 2-34 (99)
298 PRK06851 hypothetical protein; 93.5 0.028 6.1E-07 64.4 1.0 49 753-806 32-80 (367)
299 TIGR03878 thermo_KaiC_2 KaiC d 93.4 0.09 2E-06 57.0 4.7 47 752-806 37-83 (259)
300 TIGR03880 KaiC_arch_3 KaiC dom 93.4 0.16 3.5E-06 53.0 6.3 59 742-808 5-65 (224)
301 PRK13894 conjugal transfer ATP 93.3 0.13 2.9E-06 57.7 6.0 54 733-793 132-185 (319)
302 COG3973 Superfamily I DNA and 93.3 0.21 4.6E-06 60.3 7.6 39 876-916 528-566 (747)
303 PRK14971 DNA polymerase III su 93.3 0.41 8.8E-06 58.4 10.3 42 735-782 22-64 (614)
304 TIGR01243 CDC48 AAA family ATP 93.2 0.31 6.7E-06 60.3 9.3 49 727-781 450-511 (733)
305 TIGR01242 26Sp45 26S proteasom 93.2 0.069 1.5E-06 60.3 3.5 21 754-780 159-179 (364)
306 CHL00181 cbbX CbbX; Provisiona 93.2 0.05 1.1E-06 60.0 2.3 25 753-783 61-85 (287)
307 KOG0951 RNA helicase BRR2, DEA 93.2 0.24 5.3E-06 63.6 8.3 128 732-886 308-447 (1674)
308 PF00265 TK: Thymidine kinase; 93.1 0.32 7E-06 50.4 7.9 35 753-794 3-37 (176)
309 PHA02544 44 clamp loader, smal 93.1 0.17 3.7E-06 55.3 6.3 42 732-779 23-65 (316)
310 KOG0923 mRNA splicing factor A 93.1 0.25 5.4E-06 60.1 8.0 50 753-811 282-335 (902)
311 PRK05642 DNA replication initi 93.1 0.15 3.3E-06 54.4 5.8 36 752-794 46-81 (234)
312 PRK06871 DNA polymerase III su 93.1 0.33 7.2E-06 54.9 8.6 49 874-923 105-157 (325)
313 COG1202 Superfamily II helicas 93.0 0.35 7.5E-06 58.2 8.8 131 732-891 215-352 (830)
314 PF06309 Torsin: Torsin; Inte 93.0 0.19 4.1E-06 50.0 5.7 10 756-765 58-67 (127)
315 PF13481 AAA_25: AAA domain; P 92.9 0.14 3.1E-06 51.5 4.9 50 753-808 34-91 (193)
316 COG3854 SpoIIIAA ncharacterize 92.9 0.42 9.2E-06 52.4 8.5 62 876-941 218-279 (308)
317 PF00931 NB-ARC: NB-ARC domain 92.9 0.11 2.3E-06 55.5 4.1 66 737-808 3-72 (287)
318 KOG0336 ATP-dependent RNA heli 92.8 0.16 3.5E-06 58.8 5.7 132 758-911 264-405 (629)
319 PRK14955 DNA polymerase III su 92.7 0.12 2.5E-06 59.4 4.5 42 735-782 21-63 (397)
320 KOG1123 RNA polymerase II tran 92.7 0.87 1.9E-05 54.2 11.3 126 733-894 302-438 (776)
321 COG1074 RecB ATP-dependent exo 92.7 0.077 1.7E-06 68.6 3.3 58 875-940 377-438 (1139)
322 PF05729 NACHT: NACHT domain 92.6 0.16 3.4E-06 49.0 4.5 27 753-784 2-28 (166)
323 PRK13107 preprotein translocas 92.6 0.38 8.2E-06 60.7 8.8 115 755-897 99-223 (908)
324 PRK04328 hypothetical protein; 92.5 0.23 4.9E-06 53.5 6.2 59 741-807 11-71 (249)
325 TIGR02784 addA_alphas double-s 92.5 0.11 2.3E-06 67.1 4.3 41 875-916 390-441 (1141)
326 TIGR02902 spore_lonB ATP-depen 92.5 0.14 3.1E-06 61.1 4.9 42 735-782 70-111 (531)
327 PRK06067 flagellar accessory p 92.4 0.27 5.8E-06 51.9 6.3 60 741-808 13-74 (234)
328 TIGR00609 recB exodeoxyribonuc 92.4 0.13 2.7E-06 66.4 4.5 41 875-916 295-337 (1087)
329 TIGR02782 TrbB_P P-type conjug 92.3 0.23 5E-06 55.3 6.0 52 733-792 116-168 (299)
330 PRK06835 DNA replication prote 92.3 0.12 2.7E-06 58.3 4.0 35 752-793 184-218 (329)
331 PRK05298 excinuclease ABC subu 92.3 0.42 9.1E-06 58.6 8.7 78 731-818 10-89 (652)
332 KOG0738 AAA+-type ATPase [Post 92.3 0.069 1.5E-06 61.6 1.9 39 754-807 248-286 (491)
333 PF13207 AAA_17: AAA domain; P 92.3 0.08 1.7E-06 49.4 2.0 22 754-781 2-23 (121)
334 PRK13407 bchI magnesium chelat 92.3 0.11 2.4E-06 58.8 3.6 38 738-781 13-53 (334)
335 PTZ00454 26S protease regulato 92.3 0.13 2.8E-06 59.5 4.1 48 727-780 142-202 (398)
336 PRK05973 replicative DNA helic 92.2 0.18 4E-06 54.6 4.9 48 753-808 66-113 (237)
337 PRK12904 preprotein translocas 92.2 0.33 7.3E-06 60.8 7.8 122 755-914 98-229 (830)
338 KOG0344 ATP-dependent RNA heli 92.1 0.25 5.3E-06 59.3 6.2 135 735-891 160-303 (593)
339 COG0552 FtsY Signal recognitio 92.1 0.57 1.2E-05 53.3 8.8 40 753-799 141-181 (340)
340 KOG0388 SNF2 family DNA-depend 92.1 0.24 5.3E-06 60.5 6.1 164 732-916 566-736 (1185)
341 PRK14723 flhF flagellar biosyn 92.1 0.43 9.3E-06 59.5 8.4 37 752-793 186-222 (767)
342 PRK09361 radB DNA repair and r 92.1 0.22 4.8E-06 52.0 5.2 48 741-795 11-60 (225)
343 PRK11331 5-methylcytosine-spec 92.1 0.27 5.9E-06 58.0 6.4 66 733-806 178-245 (459)
344 cd01129 PulE-GspE PulE/GspE Th 92.0 0.23 4.9E-06 54.3 5.4 53 732-792 62-114 (264)
345 PTZ00361 26 proteosome regulat 92.0 0.15 3.3E-06 59.8 4.2 23 753-781 219-241 (438)
346 PRK08533 flagellar accessory p 91.9 0.22 4.7E-06 53.2 5.0 47 753-807 26-72 (230)
347 PRK13909 putative recombinatio 91.9 0.13 2.8E-06 65.0 3.8 58 875-940 327-393 (910)
348 PRK06620 hypothetical protein; 91.8 0.15 3.3E-06 54.0 3.7 13 753-765 46-58 (214)
349 cd01394 radB RadB. The archaea 91.8 0.24 5.2E-06 51.4 5.1 46 741-793 7-54 (218)
350 PRK07399 DNA polymerase III su 91.8 0.76 1.6E-05 51.6 9.3 48 875-923 123-173 (314)
351 PRK08939 primosomal protein Dn 91.8 0.27 5.9E-06 55.0 5.8 35 752-793 157-191 (306)
352 COG4581 Superfamily II RNA hel 91.7 0.57 1.2E-05 59.9 9.1 69 732-810 118-186 (1041)
353 cd01122 GP4d_helicase GP4d_hel 91.7 0.25 5.5E-06 52.8 5.3 50 753-809 32-81 (271)
354 COG3267 ExeA Type II secretory 91.7 0.53 1.2E-05 52.0 7.7 64 739-810 37-103 (269)
355 KOG0727 26S proteasome regulat 91.7 0.34 7.3E-06 53.6 6.1 20 753-778 191-210 (408)
356 PF06745 KaiC: KaiC; InterPro 91.6 0.2 4.2E-06 52.4 4.2 60 742-808 8-69 (226)
357 CHL00095 clpC Clp protease ATP 91.6 0.19 4.1E-06 63.0 4.8 42 735-782 184-225 (821)
358 cd00984 DnaB_C DnaB helicase C 91.6 0.28 6.1E-06 51.4 5.4 48 753-807 15-62 (242)
359 KOG0741 AAA+-type ATPase [Post 91.6 0.12 2.7E-06 61.5 2.9 24 754-783 259-282 (744)
360 TIGR02012 tigrfam_recA protein 91.6 0.32 6.9E-06 55.0 6.1 59 740-805 41-102 (321)
361 PRK06964 DNA polymerase III su 91.5 0.52 1.1E-05 53.7 7.8 49 874-923 130-182 (342)
362 KOG0925 mRNA splicing factor A 91.5 0.66 1.4E-05 55.1 8.6 147 736-913 49-200 (699)
363 PRK06921 hypothetical protein; 91.5 0.2 4.4E-06 54.8 4.3 37 752-794 118-154 (266)
364 TIGR02237 recomb_radB DNA repa 91.4 0.27 6E-06 50.5 5.0 38 752-796 13-50 (209)
365 KOG1002 Nucleotide excision re 91.4 0.62 1.3E-05 55.3 8.2 151 732-916 183-357 (791)
366 KOG0926 DEAH-box RNA helicase 91.4 0.48 1E-05 58.8 7.5 65 735-811 259-330 (1172)
367 PRK06090 DNA polymerase III su 91.3 0.71 1.5E-05 52.2 8.5 49 874-923 106-158 (319)
368 KOG0338 ATP-dependent RNA heli 91.3 0.7 1.5E-05 55.1 8.5 112 755-891 222-342 (691)
369 PRK10876 recB exonuclease V su 91.3 0.19 4.2E-06 65.3 4.5 41 875-916 376-418 (1181)
370 PRK07993 DNA polymerase III su 91.1 0.81 1.7E-05 51.9 8.7 49 874-923 106-158 (334)
371 TIGR02785 addA_Gpos recombinat 91.0 0.2 4.2E-06 65.5 4.3 41 875-916 387-430 (1232)
372 cd01130 VirB11-like_ATPase Typ 91.0 0.3 6.4E-06 50.1 4.8 50 732-791 8-57 (186)
373 TIGR02639 ClpA ATP-dependent C 91.0 0.35 7.7E-06 59.8 6.2 39 737-781 189-227 (731)
374 KOG0736 Peroxisome assembly fa 91.0 0.12 2.6E-06 63.7 2.1 21 754-780 708-728 (953)
375 PF00158 Sigma54_activat: Sigm 91.0 0.43 9.2E-06 48.9 5.8 52 750-808 21-72 (168)
376 COG4178 ABC-type uncharacteriz 90.9 0.22 4.8E-06 60.4 4.2 37 876-912 533-572 (604)
377 PRK08699 DNA polymerase III su 90.8 0.53 1.2E-05 53.1 7.0 48 875-923 112-163 (325)
378 KOG0333 U5 snRNP-like RNA heli 90.8 0.49 1.1E-05 56.5 6.7 139 734-898 268-422 (673)
379 PF13671 AAA_33: AAA domain; P 90.7 0.13 2.8E-06 49.1 1.7 12 754-765 2-13 (143)
380 PRK06731 flhF flagellar biosyn 90.6 1.4 3E-05 48.8 9.7 35 752-793 76-110 (270)
381 COG1444 Predicted P-loop ATPas 90.6 1.4 3E-05 55.0 10.6 73 732-809 210-284 (758)
382 KOG0651 26S proteasome regulat 90.6 0.16 3.5E-06 57.4 2.5 24 752-781 167-190 (388)
383 cd00983 recA RecA is a bacter 90.5 0.45 9.9E-06 53.9 6.1 50 740-796 41-93 (325)
384 TIGR00764 lon_rel lon-related 90.5 0.33 7.3E-06 59.0 5.4 50 753-808 39-88 (608)
385 PRK13695 putative NTPase; Prov 90.5 1.4 2.9E-05 44.5 8.8 29 754-789 3-31 (174)
386 PF07517 SecA_DEAD: SecA DEAD- 90.5 1.3 2.8E-05 49.1 9.3 136 732-911 76-222 (266)
387 TIGR02655 circ_KaiC circadian 90.4 0.44 9.6E-06 56.2 6.0 60 740-807 250-311 (484)
388 COG0466 Lon ATP-dependent Lon 90.3 0.23 5.1E-06 60.9 3.7 36 740-777 339-374 (782)
389 TIGR01359 UMP_CMP_kin_fam UMP- 90.2 0.17 3.7E-06 50.8 2.1 20 754-779 2-21 (183)
390 PF13238 AAA_18: AAA domain; P 90.2 0.17 3.8E-06 46.8 2.0 22 754-781 1-22 (129)
391 PRK12326 preprotein translocas 90.2 0.59 1.3E-05 57.9 7.0 131 736-897 81-219 (764)
392 KOG2108 3'-5' DNA helicase [Re 90.2 0.15 3.1E-06 63.4 1.9 68 732-809 12-81 (853)
393 KOG0731 AAA+-type ATPase conta 90.2 0.21 4.7E-06 61.8 3.3 46 853-898 449-494 (774)
394 PHA00729 NTP-binding motif con 90.1 0.18 3.8E-06 54.5 2.3 21 753-779 19-39 (226)
395 PF00910 RNA_helicase: RNA hel 90.0 0.23 5.1E-06 46.6 2.7 12 754-765 1-12 (107)
396 TIGR02533 type_II_gspE general 89.9 0.35 7.5E-06 57.4 4.6 44 731-780 223-266 (486)
397 PRK10865 protein disaggregatio 89.8 0.49 1.1E-05 59.7 6.2 48 739-792 187-240 (857)
398 PLN00020 ribulose bisphosphate 89.8 0.17 3.7E-06 58.5 1.9 25 751-781 148-172 (413)
399 TIGR00064 ftsY signal recognit 89.8 0.31 6.8E-06 53.5 3.9 36 753-795 74-110 (272)
400 PRK15483 type III restriction- 89.7 0.56 1.2E-05 59.8 6.4 43 753-800 61-103 (986)
401 PF12775 AAA_7: P-loop contain 89.6 0.29 6.2E-06 53.9 3.4 14 752-765 34-47 (272)
402 cd01131 PilT Pilus retraction 89.6 0.34 7.5E-06 50.3 3.8 35 752-792 2-36 (198)
403 PRK10436 hypothetical protein; 89.6 0.43 9.4E-06 56.4 5.1 43 732-780 200-242 (462)
404 KOG0733 Nuclear AAA ATPase (VC 89.5 0.18 3.8E-06 61.0 1.8 20 754-779 226-245 (802)
405 PF14532 Sigma54_activ_2: Sigm 89.4 0.21 4.6E-06 48.6 2.0 24 751-780 21-44 (138)
406 KOG0728 26S proteasome regulat 89.4 0.21 4.5E-06 55.1 2.2 42 752-808 182-223 (404)
407 PRK09302 circadian clock prote 89.3 0.67 1.4E-05 54.8 6.4 60 741-808 261-322 (509)
408 PRK13765 ATP-dependent proteas 89.2 0.34 7.3E-06 59.4 4.0 64 738-807 36-100 (637)
409 TIGR02903 spore_lon_C ATP-depe 89.2 0.37 7.9E-06 58.7 4.2 35 742-782 166-200 (615)
410 COG0610 Type I site-specific r 89.1 2.9 6.2E-05 53.8 12.1 135 754-914 276-414 (962)
411 COG2804 PulE Type II secretory 89.1 0.48 1E-05 56.3 5.0 45 732-782 240-284 (500)
412 PF03029 ATP_bind_1: Conserved 89.0 0.27 5.9E-06 53.0 2.7 30 756-792 1-30 (238)
413 TIGR02655 circ_KaiC circadian 89.0 0.58 1.3E-05 55.3 5.7 60 742-808 10-71 (484)
414 PF12846 AAA_10: AAA-like doma 89.0 0.38 8.2E-06 50.9 3.7 41 753-800 3-43 (304)
415 COG0464 SpoVK ATPases of the A 88.9 0.21 4.5E-06 58.6 1.9 21 753-779 278-298 (494)
416 PHA02624 large T antigen; Prov 88.9 0.44 9.6E-06 58.0 4.6 40 736-781 415-455 (647)
417 TIGR03881 KaiC_arch_4 KaiC dom 88.9 0.6 1.3E-05 48.8 5.1 58 741-806 8-67 (229)
418 PF05673 DUF815: Protein of un 88.8 0.7 1.5E-05 50.8 5.6 65 736-807 33-102 (249)
419 KOG1132 Helicase of the DEAD s 88.8 3.1 6.7E-05 52.5 11.6 73 735-808 23-132 (945)
420 PRK09354 recA recombinase A; P 88.8 0.74 1.6E-05 52.8 6.0 47 741-794 47-96 (349)
421 TIGR03346 chaperone_ClpB ATP-d 88.8 0.65 1.4E-05 58.6 6.1 49 738-792 181-235 (852)
422 cd01393 recA_like RecA is a b 88.8 0.76 1.6E-05 47.7 5.7 37 741-782 7-45 (226)
423 PRK00131 aroK shikimate kinase 88.6 0.28 6E-06 48.2 2.3 23 753-781 6-28 (175)
424 CHL00176 ftsH cell division pr 88.6 0.39 8.4E-06 58.8 3.9 43 731-779 184-238 (638)
425 TIGR01243 CDC48 AAA family ATP 88.6 0.47 1E-05 58.6 4.7 43 731-779 179-234 (733)
426 PRK05818 DNA polymerase III su 88.5 0.54 1.2E-05 51.9 4.6 48 875-923 87-138 (261)
427 PRK05342 clpX ATP-dependent pr 88.5 0.38 8.3E-06 56.0 3.6 24 752-781 109-132 (412)
428 PRK05917 DNA polymerase III su 88.4 2.4 5.3E-05 47.5 9.6 49 874-923 93-145 (290)
429 cd01428 ADK Adenylate kinase ( 88.4 0.27 6E-06 49.4 2.1 20 754-779 2-21 (194)
430 TIGR01360 aden_kin_iso1 adenyl 88.4 0.29 6.4E-06 48.9 2.3 22 753-780 5-26 (188)
431 PRK12608 transcription termina 88.3 0.63 1.4E-05 53.8 5.1 50 754-808 136-187 (380)
432 TIGR02538 type_IV_pilB type IV 88.2 0.56 1.2E-05 56.6 4.8 44 731-780 297-340 (564)
433 KOG1533 Predicted GTPase [Gene 88.0 0.44 9.6E-06 52.2 3.4 31 755-792 6-36 (290)
434 PRK13103 secA preprotein trans 87.9 1.5 3.3E-05 55.5 8.4 117 755-897 99-223 (913)
435 PRK11034 clpA ATP-dependent Cl 87.8 0.53 1.2E-05 58.8 4.5 38 738-781 194-231 (758)
436 PRK08118 topology modulation p 87.7 0.33 7.2E-06 49.3 2.2 22 754-781 4-25 (167)
437 KOG0729 26S proteasome regulat 87.7 0.33 7.1E-06 54.0 2.2 34 732-765 179-225 (435)
438 KOG0652 26S proteasome regulat 87.7 0.32 6.9E-06 54.0 2.1 13 753-765 207-219 (424)
439 KOG0329 ATP-dependent RNA heli 87.6 1 2.2E-05 49.9 5.9 114 754-891 82-200 (387)
440 COG1223 Predicted ATPase (AAA+ 87.6 0.29 6.4E-06 54.3 1.8 13 753-765 153-165 (368)
441 PRK15455 PrkA family serine pr 87.6 0.53 1.1E-05 57.3 4.1 28 751-784 103-130 (644)
442 PRK14531 adenylate kinase; Pro 87.6 0.36 7.7E-06 49.3 2.3 22 754-781 5-26 (183)
443 PRK14532 adenylate kinase; Pro 87.5 0.33 7.2E-06 49.2 2.1 20 754-779 3-22 (188)
444 PRK03839 putative kinase; Prov 87.5 0.35 7.5E-06 48.8 2.2 22 754-781 3-24 (180)
445 PF13476 AAA_23: AAA domain; P 87.5 0.3 6.5E-06 48.6 1.7 27 751-783 19-45 (202)
446 cd01125 repA Hexameric Replica 87.5 0.78 1.7E-05 48.7 4.9 49 754-808 4-62 (239)
447 cd01123 Rad51_DMC1_radA Rad51_ 87.3 0.79 1.7E-05 47.8 4.8 34 741-779 7-42 (235)
448 COG2204 AtoC Response regulato 87.3 2.8 6.1E-05 49.9 9.7 41 736-782 147-189 (464)
449 PRK06851 hypothetical protein; 87.3 0.54 1.2E-05 54.1 3.9 53 742-802 206-260 (367)
450 TIGR00368 Mg chelatase-related 87.3 0.43 9.3E-06 56.9 3.1 60 735-802 197-256 (499)
451 KOG0734 AAA+-type ATPase conta 87.3 0.36 7.7E-06 57.8 2.4 20 753-778 339-358 (752)
452 TIGR02773 addB_Gpos ATP-depend 87.2 0.94 2E-05 58.9 6.4 40 876-916 196-235 (1158)
453 PRK14954 DNA polymerase III su 87.2 0.62 1.3E-05 57.0 4.4 38 739-782 25-63 (620)
454 KOG0327 Translation initiation 87.1 0.51 1.1E-05 54.4 3.4 65 735-807 50-115 (397)
455 CHL00081 chlI Mg-protoporyphyr 87.1 0.64 1.4E-05 53.2 4.2 42 736-783 23-64 (350)
456 PRK02496 adk adenylate kinase; 86.9 0.4 8.7E-06 48.5 2.3 22 754-781 4-25 (184)
457 TIGR02030 BchI-ChlI magnesium 86.8 0.65 1.4E-05 52.8 4.1 26 751-782 25-50 (337)
458 PRK10865 protein disaggregatio 86.8 0.69 1.5E-05 58.5 4.7 26 752-783 599-624 (857)
459 cd01121 Sms Sms (bacterial rad 86.5 1.1 2.5E-05 51.5 5.9 59 741-807 70-130 (372)
460 KOG0334 RNA helicase [RNA proc 86.5 2.2 4.7E-05 54.4 8.6 70 732-808 386-460 (997)
461 PF00406 ADK: Adenylate kinase 86.4 0.39 8.5E-06 47.2 1.8 20 756-781 1-20 (151)
462 cd01672 TMPK Thymidine monopho 86.4 1 2.2E-05 45.0 4.8 33 753-792 2-34 (200)
463 TIGR00041 DTMP_kinase thymidyl 86.3 1.1 2.4E-05 45.4 5.1 33 753-792 5-37 (195)
464 PRK14530 adenylate kinase; Pro 86.3 0.43 9.3E-06 49.8 2.2 22 754-781 6-27 (215)
465 cd02019 NK Nucleoside/nucleoti 86.3 0.84 1.8E-05 39.8 3.7 22 754-781 2-23 (69)
466 KOG0737 AAA+-type ATPase [Post 86.3 0.34 7.4E-06 55.7 1.5 20 754-779 130-149 (386)
467 PRK11823 DNA repair protein Ra 86.3 1.2 2.6E-05 52.4 6.0 58 741-806 68-127 (446)
468 TIGR00763 lon ATP-dependent pr 86.2 0.54 1.2E-05 58.7 3.3 25 752-782 348-372 (775)
469 COG0541 Ffh Signal recognition 86.2 2.6 5.7E-05 49.7 8.5 48 753-808 102-152 (451)
470 KOG0339 ATP-dependent RNA heli 86.2 0.96 2.1E-05 54.0 5.1 136 733-890 245-384 (731)
471 KOG3928 Mitochondrial ribosome 86.0 0.63 1.4E-05 54.3 3.4 25 753-782 181-205 (461)
472 TIGR00602 rad24 checkpoint pro 85.8 0.79 1.7E-05 56.2 4.4 34 732-765 86-124 (637)
473 TIGR01313 therm_gnt_kin carboh 85.8 0.43 9.4E-06 47.2 1.8 21 754-780 1-21 (163)
474 PRK08154 anaerobic benzoate ca 85.8 0.84 1.8E-05 50.9 4.3 44 732-781 106-157 (309)
475 cd00464 SK Shikimate kinase (S 85.7 0.55 1.2E-05 45.4 2.4 22 754-781 2-23 (154)
476 PRK14528 adenylate kinase; Pro 85.6 0.52 1.1E-05 48.6 2.3 21 754-780 4-24 (186)
477 PRK05541 adenylylsulfate kinas 85.6 0.81 1.8E-05 46.0 3.7 25 753-783 9-33 (176)
478 PRK00279 adk adenylate kinase; 85.5 0.51 1.1E-05 49.3 2.3 21 754-780 3-23 (215)
479 PRK09302 circadian clock prote 85.5 1.4 2.9E-05 52.3 6.0 61 741-808 19-81 (509)
480 PF03308 ArgK: ArgK protein; 85.4 1.4 3E-05 48.9 5.6 52 737-795 14-68 (266)
481 PRK06995 flhF flagellar biosyn 85.3 0.87 1.9E-05 54.3 4.3 38 753-795 258-296 (484)
482 PRK10463 hydrogenase nickel in 85.3 1.2 2.5E-05 50.0 5.1 50 735-792 88-137 (290)
483 KOG0730 AAA+-type ATPase [Post 85.3 0.93 2E-05 55.4 4.5 49 725-779 429-490 (693)
484 KOG0924 mRNA splicing factor A 85.3 3.2 6.9E-05 51.3 8.8 52 752-811 372-425 (1042)
485 PRK07261 topology modulation p 85.2 0.53 1.2E-05 47.9 2.2 22 754-781 3-24 (171)
486 PRK06696 uridine kinase; Valid 85.2 1.3 2.7E-05 46.8 5.0 34 751-791 22-55 (223)
487 PRK11608 pspF phage shock prot 85.2 1.2 2.7E-05 49.9 5.2 26 750-781 28-53 (326)
488 TIGR00150 HI0065_YjeE ATPase, 85.2 1 2.2E-05 45.1 4.0 53 735-797 4-58 (133)
489 TIGR01351 adk adenylate kinase 85.2 0.51 1.1E-05 49.1 2.1 20 754-779 2-21 (210)
490 PF13521 AAA_28: AAA domain; P 85.2 0.4 8.7E-06 47.6 1.2 20 754-779 2-21 (163)
491 PLN02200 adenylate kinase fami 85.1 0.53 1.2E-05 50.6 2.2 23 753-781 45-67 (234)
492 TIGR02974 phageshock_pspF psp 85.1 1.1 2.4E-05 50.6 4.8 26 751-782 22-47 (329)
493 PF07726 AAA_3: ATPase family 85.0 0.47 1E-05 47.5 1.6 60 878-939 64-130 (131)
494 PRK08233 hypothetical protein; 85.0 0.47 1E-05 47.2 1.6 23 753-781 5-27 (182)
495 PRK11034 clpA ATP-dependent Cl 84.9 0.84 1.8E-05 57.1 4.1 24 752-781 489-512 (758)
496 TIGR00416 sms DNA repair prote 84.9 1.3 2.8E-05 52.2 5.5 60 740-807 81-142 (454)
497 KOG0732 AAA+-type ATPase conta 84.9 1.3 2.8E-05 56.9 5.7 12 754-765 302-313 (1080)
498 KOG0346 RNA helicase [RNA proc 84.9 2.6 5.7E-05 49.7 7.7 127 735-886 43-180 (569)
499 PRK12724 flagellar biosynthesi 84.8 1.6 3.4E-05 51.5 5.9 50 753-808 225-276 (432)
500 cd02021 GntK Gluconate kinase 84.7 0.56 1.2E-05 45.7 2.0 21 753-779 1-21 (150)
No 1
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=100.00 E-value=2.3e-46 Score=425.52 Aligned_cols=368 Identities=23% Similarity=0.289 Sum_probs=276.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc-cccccceEeeehhhhhhcccccccccCccCCCCceEEEEEeCCCCCCCCCCCCC
Q 002130 557 LPSTYKDYFAALLYAEDFYEEKWSG-FQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKLFVAFEIDSVPERRPFLLSR 635 (961)
Q Consensus 557 T~~NYk~rF~~LL~LEEi~~eeirr-y~me~v~Lk~~~~~i~~k~L~g~~~g~~~~~~G~~fl~LeVpgLaE~RPsLlvG 635 (961)
....|...|..|+.+|......+++ -.+++++.+|..+ .+...+..|..|.+ ++.-.+..|
T Consensus 238 da~~y~~vf~pliklea~ydk~~Kes~~q~~~tvRW~~g-----------------Lnkk~~a~f~~~k~-~~e~kl~~G 299 (935)
T KOG1802|consen 238 DAYEYQNVFSPLIKLEADYDKRLKESQTQENGTVRWDIG-----------------LNKKRLAYFTLPKL-DSELKLAIG 299 (935)
T ss_pred chHHHhhhcchhhhhhhhhhhhhhhhcccccceEEeeec-----------------cccceEEEEecCCC-cchhccccC
Confidence 4789999999999999876665544 3567888998421 23456777877877 555678899
Q ss_pred CEEEEEECCCCceeEE--EEEEEEecc--cEEEEEECCCcccCCCCCCcEEEEEeeChhHHHHHHHHHHHHhh-------
Q 002130 636 DFVYAQRSGGKSKKFQ--GFLYRVVKW--TTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASD------- 704 (961)
Q Consensus 636 D~VlL~~~g~~~~~y~--G~V~~V~~s--d~V~L~f~~~f~~~~~~~~~~~V~F~lNR~t~rR~h~ALd~l~~------- 704 (961)
|.+.|+..++....|. |+|.++-.. +++.|++...-....+...-|.|+|.++.++|.||..|+..+..
T Consensus 300 dE~~L~y~~~~~~~w~~~g~v~~~pd~~~dE~~lEl~~~~~~p~e~~~~Ftvd~vwk~ts~drm~~alk~la~D~~~vs~ 379 (935)
T KOG1802|consen 300 DEIRLTYSGGLVLPWNGIGSVLKIPDNNGDEVKLELEFSQDPPIEVTHGFTVDFVWKSTSFDRMQLALKLLAVDEKKVSG 379 (935)
T ss_pred CeeEEEecCCcCCcccccceEEecCCCCcceeEEEeecCCCCCcccccceEEEEEEcCccHHHHHHHHHHhhhccccchh
Confidence 9999999876544454 778887653 56666553321111124456999999999999999999987741
Q ss_pred hhhccccCCCCCC---CCCCCCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 705 SLFRNYLFPDCAS---RKSIPYPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 705 ~ll~~iLFP~~~~---~r~ip~~~~~~~~n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.....+|+-.... ....|. .+..+..++||.+|..||+++|++. ..||||||||||| .|.+++|.+++
T Consensus 380 y~y~klLgh~~~~~~~k~~LP~-~~s~~~lpkLN~SQ~~AV~~VL~rp---lsLIQGPPGTGKT-----vtsa~IVyhl~ 450 (935)
T KOG1802|consen 380 YLYHKLLGHPVEDSSLKKLLPR-RFSVPNLPKLNASQSNAVKHVLQRP---LSLIQGPPGTGKT-----VTSATIVYHLA 450 (935)
T ss_pred hhhhHHhcCcchhhhhcccCch-hhcCCCchhhchHHHHHHHHHHcCC---ceeeecCCCCCce-----ehhHHHHHHHH
Confidence 1112223321111 111221 1122234789999999999999874 6799999999999 99999999999
Q ss_pred HhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccC--cc-------------HHHHHhhhhc-------
Q 002130 782 RRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADG--VS-------------DEIFQVSLVE------- 839 (961)
Q Consensus 782 k~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~--V~-------------~~I~~y~~~~------- 839 (961)
++ ...+||||||||.|+|+|++++++ .+.+++|+.+.+|+... ++ +++....+..
T Consensus 451 ~~-~~~~VLvcApSNiAVDqLaeKIh~--tgLKVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS 527 (935)
T KOG1802|consen 451 RQ-HAGPVLVCAPSNIAVDQLAEKIHK--TGLKVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELS 527 (935)
T ss_pred Hh-cCCceEEEcccchhHHHHHHHHHh--cCceEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhccccc
Confidence 87 678999999999999999999997 46899999999887432 11 1222111111
Q ss_pred ---cccc----CCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeC
Q 002130 840 ---RECF----SCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 840 ---~~~F----~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGD 912 (961)
+..| +....+.|.+++||||||.+||... +..-.|..|+||||.|++||||||||.. ..+++|||||
T Consensus 528 ~sD~~k~~~lk~~~e~ell~~AdVIccTcv~Agd~r---l~~~kfr~VLiDEaTQatEpe~LiPlvl---G~kq~VlVGD 601 (935)
T KOG1802|consen 528 SSDEKKYRKLKRAAEKELLNQADVICCTCVGAGDRR---LSKFKFRTVLIDEATQATEPECLIPLVL---GAKQLVLVGD 601 (935)
T ss_pred chhhHHHHHHHHHHHHHHHhhcCEEEEecccccchh---hccccccEEEEecccccCCcchhhhhhh---cceeEEEecc
Confidence 1111 1124577899999999999998543 3335899999999999999999999983 5699999999
Q ss_pred CCCCCccccChHHHhcCCChhHHHHHHcC--------Cccccc-------CchhhhhhhhcCC
Q 002130 913 PHNSPSRVRSDIARKNGLKMSYFERLCLT--------EAYRSC-------NSMFFSQLFTEEV 960 (961)
Q Consensus 913 pkQLpPvV~S~~A~k~GL~~SLFERL~~~--------~~Y~~~-------np~fITKLv~Ngv 960 (961)
|+||||+|..+.|...||.+||||||+.. .+|||| +..||.+-++|||
T Consensus 602 h~QLgpvi~~kK~a~Agl~qsLferli~lg~~P~~L~vQYRmhP~lSefpsn~fY~G~LqnGV 664 (935)
T KOG1802|consen 602 HKQLGPVIMCKKAATAGLSQSLFERLISLGIKPIRLQVQYRMHPALSEFPSNMFYEGELQNGV 664 (935)
T ss_pred ccccCceeeeHHHHHhHHHHHHHHHHHhccCCceEEEEeeeeChhhhhcchhhhccchhhcCc
Confidence 99999999999999999999999999874 789999 8999999999998
No 2
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.3e-44 Score=409.41 Aligned_cols=313 Identities=23% Similarity=0.327 Sum_probs=226.6
Q ss_pred CCceEEEEEeCCCCCCCC--CCCCCCEEEEEEC--C-CCceeEEEEEEEEecccEEEEEECCCcccCCCCCCcEEEEEee
Q 002130 613 DDKLFVAFEIDSVPERRP--FLLSRDFVYAQRS--G-GKSKKFQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFSF 687 (961)
Q Consensus 613 ~G~~fl~LeVpgLaE~RP--sLlvGD~VlL~~~--g-~~~~~y~G~V~~V~~sd~V~L~f~~~f~~~~~~~~~~~V~F~l 687 (961)
.|+.+..|+... |..| .+..||.|+|+.. + +.....+|+|+++.. +.|.+.|.+...... ....+.+.-..
T Consensus 56 ~g~~li~f~~~~--~~lp~~~~~~gd~v~lr~~~~~~~~~~~~~GvV~~~~~-~~i~~a~ee~~d~~~-~~~~l~l~kl~ 131 (649)
T KOG1803|consen 56 GGKSLIVFSKNR--EVLPSNSFGPGDVVWLRTDKLNNKSKPCTEGVVYRVAE-DSIDVAFEEEVDKPL-TLSSLRLLKLE 131 (649)
T ss_pred cceEEEEeccCc--cccCcCCCCCCcEEEEEcccccccCcccccceeEeecc-chhhHhHHhhhcccc-hhhHHHHHHhh
Confidence 466788887654 4444 6889999999843 1 223468999999999 777776655432211 11134444456
Q ss_pred ChhHHHHHHHHHHHHhhhh-------hccccCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHhccCCCCceEecc
Q 002130 688 NRVCLKRAHEAVADASDSL-------FRNYLFPDCASRKSIP-YPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGP 759 (961)
Q Consensus 688 NR~t~rR~h~ALd~l~~~l-------l~~iLFP~~~~~r~ip-~~~~~~~~n~~LN~eQr~AV~~ILs~~~~~P~LI~GP 759 (961)
|+.+++||..++..+.... +...||.+........ ......+++..||.+|++||..+++.+ .+++||||
T Consensus 132 n~vty~R~~~~~i~l~~~~~~~~~~~vv~~l~~~~~~~~~~~~~~~~~~~~~~~ln~SQk~Av~~~~~~k--~l~~I~GP 209 (649)
T KOG1803|consen 132 NKVTYRRMKDTMICLSKFSNPGPSSDVVETLFGDRKPIPSPNIEIKKITFFNKNLNSSQKAAVSFAINNK--DLLIIHGP 209 (649)
T ss_pred hhhhheecHHHHhhHhhhcCccchhhhHHHHhccccCCCCchhhhcccccCCccccHHHHHHHHHHhccC--CceEeeCC
Confidence 8889999988877665311 1122333222100000 112244567899999999999998875 47999999
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHH--------
Q 002130 760 LCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDE-------- 831 (961)
Q Consensus 760 PGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~-------- 831 (961)
|||||| +||+|+|.|++++ +.|||||||||.|+|+|++||.. .+..++|++...|..+.+...
T Consensus 210 PGTGKT-----~TlvEiI~qlvk~--~k~VLVcaPSn~AVdNiverl~~--~~~~l~R~g~paRl~~~~~~~sld~~~~t 280 (649)
T KOG1803|consen 210 PGTGKT-----RTLVEIISQLVKQ--KKRVLVCAPSNVAVDNIVERLTH--LKLNLVRVGHPARLLESVADHSLDLLSNT 280 (649)
T ss_pred CCCCce-----eeHHHHHHHHHHc--CCeEEEEcCchHHHHHHHHHhcc--cccchhhcCchhhhhhhhhhhHHHHHHhc
Confidence 999999 9999999999997 89999999999999999999973 578899999877654332211
Q ss_pred ---------HH---Hhhhhc----------c----------cccC----CChhhhhccceEEEEeeccchhhhccCCCCC
Q 002130 832 ---------IF---QVSLVE----------R----------ECFS----CPPLEELRQYKVISSTFVSSFRLHNQGITAG 875 (961)
Q Consensus 832 ---------I~---~y~~~~----------~----------~~F~----~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g 875 (961)
+. ..+... . ..++ ..-.+.+..++||++|+.++.. ..++..
T Consensus 281 ~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~n~~VVfaTl~ga~~---~~~~~~ 357 (649)
T KOG1803|consen 281 KDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIISNSRVVFATLGGALD---RLLRKR 357 (649)
T ss_pred CchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceEEEeccchhh---hhhccc
Confidence 10 000000 0 0000 0113567899999999999875 223445
Q ss_pred CccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHc----------CCccc
Q 002130 876 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL----------TEAYR 945 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~----------~~~Y~ 945 (961)
.||+||||||+||+||+||||+. +..++||||||+||+|+|.|+.|..+||..||||||.+ ..|||
T Consensus 358 ~fD~vIIDEaaQamE~~cWipvl----k~kk~ILaGDp~QLpP~v~S~~a~~~gl~~Sl~erlae~~~~~~~~~Ln~QYR 433 (649)
T KOG1803|consen 358 TFDLVIIDEAAQAMEPQCWIPVL----KGKKFILAGDPKQLPPTVLSDKAKRGGLQVSLLERLAEKFGNLSKILLNEQYR 433 (649)
T ss_pred CCCEEEEehhhhhccchhhhHHh----cCCceEEeCCcccCCcccccchhhhccchhhHHHHHHHHcccchhhhhhhhhc
Confidence 79999999999999999999998 56799999999999999999999999999999999987 38999
Q ss_pred cc
Q 002130 946 SC 947 (961)
Q Consensus 946 ~~ 947 (961)
|+
T Consensus 434 Mn 435 (649)
T KOG1803|consen 434 MN 435 (649)
T ss_pred ch
Confidence 98
No 3
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=100.00 E-value=3.1e-41 Score=396.69 Aligned_cols=317 Identities=23% Similarity=0.276 Sum_probs=231.8
Q ss_pred CCceEEEEEeCCCCCCCCCCCCCCEEEEEECCCCceeEEEEEEEEecccEEEEEECCCcccCCCCCCcEEEEEeeChhHH
Q 002130 613 DDKLFVAFEIDSVPERRPFLLSRDFVYAQRSGGKSKKFQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCL 692 (961)
Q Consensus 613 ~G~~fl~LeVpgLaE~RPsLlvGD~VlL~~~g~~~~~y~G~V~~V~~sd~V~L~f~~~f~~~~~~~~~~~V~F~lNR~t~ 692 (961)
.|..+++|...... ...+.+||.|.|...++....+.|+|++|.+ +.|.|.|+..... + ....|.|++..|.++|
T Consensus 41 ~g~~~~~f~~~~~~--~~~~~~GD~v~i~~~~~~~~~~~g~V~~v~~-~~i~v~~~~~~~~-~-~~~~~~i~~~~~~~t~ 115 (637)
T TIGR00376 41 LGFLLVRFGRRKAI--ATEISVGDIVLVSRGNPLQSDLTGVVTRVGK-RFITVALEESVPQ-W-SLKRVRIDLYANDVTF 115 (637)
T ss_pred CCeEEEEEecCCCC--CCcCCCCCEEEEecCCCCCCCcEEEEEEEcC-cEEEEEECCCCCc-c-cCceEEEEEecCccHH
Confidence 45677788743221 2368899999999765555678999999999 9999999886432 2 2345999999999999
Q ss_pred HHHHHHHHHHhhh--hhccccCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchH
Q 002130 693 KRAHEAVADASDS--LFRNYLFPDCASRKSIPYPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTG 770 (961)
Q Consensus 693 rR~h~ALd~l~~~--ll~~iLFP~~~~~r~ip~~~~~~~~n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g 770 (961)
+||+.||+.+... .+.++||....... ........+.+..||..|+.||..++... ..++|+||||||||
T Consensus 116 ~rm~~aL~~l~~~~~~l~~~llg~~~p~~-~~~~~~~~~~~~~ln~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT----- 187 (637)
T TIGR00376 116 KRMKEALRALTENHSRLLEFILGREAPSK-ASEIHDFQFFDPNLNESQKEAVSFALSSK--DLFLIHGPPGTGKT----- 187 (637)
T ss_pred HHHHHHHHHHHhchhhHHHHHhCCCCCCc-ccccccccccCCCCCHHHHHHHHHHhcCC--CeEEEEcCCCCCHH-----
Confidence 9999999988632 35567776544221 11112234456899999999999998763 36899999999999
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCcc---------------------
Q 002130 771 NVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVS--------------------- 829 (961)
Q Consensus 771 ~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~--------------------- 829 (961)
+|++++|.++++. +.+||+|||||.|||+|+++|.+. +.+++|++...|....+.
T Consensus 188 ~t~~~ii~~~~~~--g~~VLv~a~sn~Avd~l~e~l~~~--~~~vvRlg~~~r~~~~~~~~sl~~~~~~~~~~~~~~~~~ 263 (637)
T TIGR00376 188 RTLVELIRQLVKR--GLRVLVTAPSNIAVDNLLERLALC--DQKIVRLGHPARLLKSNKQHSLDYLIENHPKYQIVADIR 263 (637)
T ss_pred HHHHHHHHHHHHc--CCCEEEEcCcHHHHHHHHHHHHhC--CCcEEEeCCchhcchhHHhccHHHHHhcChhHHHHHHHH
Confidence 9999999998876 669999999999999999999874 578999998776321110
Q ss_pred HHHHHhhhh---------------c----------ccccC--------------------------C------Chhhhhc
Q 002130 830 DEIFQVSLV---------------E----------RECFS--------------------------C------PPLEELR 852 (961)
Q Consensus 830 ~~I~~y~~~---------------~----------~~~F~--------------------------~------p~~e~L~ 852 (961)
.++.+.... . ...++ + ...+.|.
T Consensus 264 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 343 (637)
T TIGR00376 264 EKIDELIEERNKKLKPSPQKRRGLSDIKILRKALKKREARGIESLKIASMAEWIETNKSIDRLLKLLPEIEERIENEILA 343 (637)
T ss_pred HHHHHHHHHHHhhccchHhHhhccchHHHHHHHHhhhhhcccchhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 111000000 0 00000 0 0123466
Q ss_pred cceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCCh
Q 002130 853 QYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKM 932 (961)
Q Consensus 853 ~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~ 932 (961)
+++|+++|+... .+....||+||||||+|++||++||||. ...++||||||+||||+|.+..+ .||+.
T Consensus 344 ~a~v~~st~~~~------~l~~~~Fd~vIIDEAsQ~~ep~~lipl~----~~~~~vLvGD~~QLpP~v~s~~~--~~l~~ 411 (637)
T TIGR00376 344 ESDVVQSTNSSA------GLKGWEFDVAVIDEASQAMEPSCLIPLL----KARKLILAGDHKQLPPTILSHDA--EELEL 411 (637)
T ss_pred hCCEEEeccCcH------hhccCCCCEEEEECccccchHHHHHHHh----hCCeEEEecChhhcCCccccccc--cccch
Confidence 788877765422 2345689999999999999999999997 34799999999999999998763 58999
Q ss_pred hHHHHHHcC---------Cccccc-------Cchhhhhhhhc
Q 002130 933 SYFERLCLT---------EAYRSC-------NSMFFSQLFTE 958 (961)
Q Consensus 933 SLFERL~~~---------~~Y~~~-------np~fITKLv~N 958 (961)
||||||++. .+|||| +..||...+++
T Consensus 412 SlferL~~~~~~~~~~L~~QYRMh~~I~~f~s~~fY~g~L~~ 453 (637)
T TIGR00376 412 TLFERLIKEYPERSRTLNVQYRMNQKIMEFPSREFYNGKLTA 453 (637)
T ss_pred hHHHHHHHhCCCceeecchhcCCCHHHHhhhHHhhcCCcccc
Confidence 999999873 579999 55566544443
No 4
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-36 Score=357.74 Aligned_cols=194 Identities=19% Similarity=0.214 Sum_probs=166.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..||..|++|+..+|..++ ..||.|.|||||| +||+.+|+.++.. +++||++++||.|||+|+.||...
T Consensus 668 ~~LN~dQr~A~~k~L~aed--y~LI~GMPGTGKT-----TtI~~LIkiL~~~--gkkVLLtsyThsAVDNILiKL~~~-- 736 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAED--YALILGMPGTGKT-----TTISLLIKILVAL--GKKVLLTSYTHSAVDNILIKLKGF-- 736 (1100)
T ss_pred hhcCHHHHHHHHHHHhccc--hheeecCCCCCch-----hhHHHHHHHHHHc--CCeEEEEehhhHHHHHHHHHHhcc--
Confidence 4799999999999999875 5699999999999 9999999988876 999999999999999999999873
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCC--ChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSC--PPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~--p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
+..++|+|.. +.|++++.+||...+..+.. --+..+.+..||+|||.+.+.. -|...+||+||||||+|+.
T Consensus 737 ~i~~lRLG~~----~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p---lf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 737 GIYILRLGSE----EKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP---LFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CcceeecCCc----cccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch---hhhccccCEEEEccccccc
Confidence 4569999975 46899999999643322211 1134567889999999998743 2455689999999999999
Q ss_pred hHHHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHc---------CCccccc
Q 002130 890 EPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL---------TEAYRSC 947 (961)
Q Consensus 890 EPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~---------~~~Y~~~ 947 (961)
.|-+|.||. + ..++||||||.||||+|+|.+|++.||+.|||+||.+ +-||||+
T Consensus 810 lP~~LgPL~-~---s~kFVLVGDh~QLpPLV~s~ear~~Gl~~SLFkrL~e~hpeaV~~Lt~QYRMn 872 (1100)
T KOG1805|consen 810 LPLCLGPLS-F---SNKFVLVGDHYQLPPLVRSSEARQEGLSESLFKRLSEKHPEAVSSLTLQYRMN 872 (1100)
T ss_pred cchhhhhhh-h---cceEEEecccccCCccccchhhhhcCcchHHHHHHhhhCchHHHhHHHHHhhc
Confidence 999999998 4 4899999999999999999999999999999999998 3689998
No 5
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-37 Score=361.99 Aligned_cols=437 Identities=17% Similarity=0.158 Sum_probs=297.9
Q ss_pred hhhhhhhhcCCCCCCccccCCCCCCCCCCCCCCcccccchhhHHHHhhhcCCCCCChHHHHHHHhcc----CCcccCCCC
Q 002130 481 KEVVHEVLKKPSSPLFHKASSSSKPTLSPLPTDSTNQQKKASFIWVQKGATNYKIPKDIEDLIKKDI----VPKVLKKPL 556 (961)
Q Consensus 481 ~~~~~e~~~~~~~p~~~k~~~~~~~t~~~~~t~~~~~~kr~s~~~v~~~L~~Y~iP~~l~~li~~~~----~~~~L~~~L 556 (961)
...+... .+....|-+...+........-.....-...++++++.+.....+.++......++... ..+...+++
T Consensus 11 ~~~~~~~-~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (775)
T KOG1804|consen 11 VLSVYKS-VPERQDFYANGTKEAVYEADIEEKTKFVIYFRLSRLCEEEGVLQADIELEVELQFQLNRAPLCESSFAVERI 89 (775)
T ss_pred cchhhhc-cccccccccccccccccccchhhceeEeeeeehhhhcccccCCCCCCcchhhHHHhhhhhhhccccchhhhc
Confidence 3344444 55666666777777777666677777778889999999999999988876665444322 224566788
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHhccccccceEeeehhhhhhcccccccccCccCCCCceEEEEEeCCCCCCCCCCCCC
Q 002130 557 LPSTYKDYFAALLYAEDFYEE-KWSGFQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKLFVAFEIDSVPERRPFLLSR 635 (961)
Q Consensus 557 T~~NYk~rF~~LL~LEEi~~e-eirry~me~v~Lk~~~~~i~~k~L~g~~~g~~~~~~G~~fl~LeVpgLaE~RPsLlvG 635 (961)
+..+|+..|+.+++.++...+ .++.+...+...+. .| .+.++++++++|.+|.|..|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~l~~~~~~~l~e~~P~L~~G 147 (775)
T KOG1804|consen 90 SDSTYKFPFSSLLPSIEWYPEVQWAEKCEPRLNALQ---------------------KG-ALLAITVPLLRELPPSLLIG 147 (775)
T ss_pred ccccceeeeeccCCCCCCccccccchhcchhhhhhh---------------------cc-cccceeccccccCCcccccC
Confidence 999999999999999999877 77777665544443 22 56778888999999999999
Q ss_pred ----CEEEEEECCC--CceeEEEEEEEEecccEEEEEECCCcccCCCCCCcEEEEEeeChhHHHHHHHHHHHHhhhhhcc
Q 002130 636 ----DFVYAQRSGG--KSKKFQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRN 709 (961)
Q Consensus 636 ----D~VlL~~~g~--~~~~y~G~V~~V~~sd~V~L~f~~~f~~~~~~~~~~~V~F~lNR~t~rR~h~ALd~l~~~ll~~ 709 (961)
|.+.+..... .......++..... ++......+++...| .++.+++.|.+ |+.+++.| ....-.-...-+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~-~~~~~~~ir~y~~~~-v~~~~~~~~~~-r~~~~~r~-l~~~~pvv~~~~ 223 (775)
T KOG1804|consen 148 PGTGETLELAQAVKSLLQQEEAKILILLHS-ESAADIYIREYLHPY-VEEGLPEATPL-RVYSRKRP-LAQVNPVVLQYC 223 (775)
T ss_pred CccccceeecchhhcccccccccceEeech-hHHHHHHHHHhhccc-ccccccccccc-cceeeccc-ccccCCceeeee
Confidence 5554443311 11111112211111 111222222333333 34455555555 55555555 222111011112
Q ss_pred ccCCCCCCC-------------------------------------------------------------CCCCCC---C
Q 002130 710 YLFPDCASR-------------------------------------------------------------KSIPYP---S 725 (961)
Q Consensus 710 iLFP~~~~~-------------------------------------------------------------r~ip~~---~ 725 (961)
++|+..... +.+-.. .
T Consensus 224 ~if~~~~~~~~pq~~~~~~Hrv~~~~~~~s~~~~~l~~~~~~~t~~~~~eaae~~~~~~l~P~~~~~~~~~~~L~~~~~q 303 (775)
T KOG1804|consen 224 FIFDSHITFRRPQVEDLFKHRVVVVTLSQSQYLTPLGLPVGFFTHILLDEAAQAMECELLMPLALPSSGTRIVLAGPHLQ 303 (775)
T ss_pred eeccchhhhccchhhhhcccceeEeecceeecccccCCCCCceeeeeHHHHHhcCCceeecccccCCCCceeeecccccc
Confidence 223221100 000000 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHH
Q 002130 726 LCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 726 ~~~~~n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleR 805 (961)
+..+.+...+.+|+.+ .+..+...||+|+|||||||| .+++++|.++....+..+||+|+++|+|+|+++.|
T Consensus 304 l~~~l~s~~~~~~~~~---~~~~~~~~~y~~~~p~~~g~~-----~n~~~a~~~v~~~~~~~~il~~~p~~a~~k~~~~r 375 (775)
T KOG1804|consen 304 LTPFLNSVAREEQALH---LLLCRLPEPYIVFGPPGTGKT-----ENYREAIAIVSFTSPHFYILVCAPSNASGKQPAHR 375 (775)
T ss_pred cccchhhhhhhhhhhh---hcccccccccccccCCCcCCc-----cchHHHHHHHHhcchHHHhhccccccccccccccc
Confidence 1111122223333333 556666789999999999999 99999999998888899999999999999999999
Q ss_pred HHh--hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEe
Q 002130 806 LMK--DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLI 883 (961)
Q Consensus 806 L~~--~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIID 883 (961)
|+. .+......++++..+....+-.++..++...+..| .+..++|+++||+++|.+...++..+||+|||||
T Consensus 376 l~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~e~~~------~~~~~~i~i~t~~sag~~~~~g~~v~~f~hil~D 449 (775)
T KOG1804|consen 376 LHYPLTFSTARGEDVRAKSSTAWYNNAEVSEVVEKVEELR------KVWPYRWGITTCTSAGCVTSYGFQVGHFRHILVD 449 (775)
T ss_pred ccccccccccccccccccchhHHhhhHHHHHHHHHHHHHh------hccceEEEEeeccceeeeecccccccceeeeeec
Confidence 954 12223344454444444444455555555444444 3468899999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHcCCccccc-----Cchhhhhhhhc
Q 002130 884 DASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLTEAYRSC-----NSMFFSQLFTE 958 (961)
Q Consensus 884 EASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~~~~Y~~~-----np~fITKLv~N 958 (961)
||||++|||+|||+..+.... ++||+|||+||+|++.|..|.++||+.|||||++.+..|+.. |+.+.|||++|
T Consensus 450 eAg~stEpe~lv~i~~~~~~~-~vvLsgdh~Qlgpv~~s~~A~~~gl~rsLler~l~r~~~~~~~~g~~~~l~~t~l~rn 528 (775)
T KOG1804|consen 450 EAGVSTEPELLVPGKQFRQPF-QVVLSGDHTQLGPVSKSARAEELGLDRSLLERALTRAQSLVAVVGDYNALCSTGLCRN 528 (775)
T ss_pred ccccccCccccccccccccee-EEEEccCcccccccccchhhhhhcccHHHHHHHHHHHhhccccCCCcccccchhhHHH
Confidence 999999999999999776433 999999999999999999999999999999999999777766 99999999999
Q ss_pred C
Q 002130 959 E 959 (961)
Q Consensus 959 g 959 (961)
+
T Consensus 529 y 529 (775)
T KOG1804|consen 529 Y 529 (775)
T ss_pred H
Confidence 6
No 6
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=100.00 E-value=5.8e-33 Score=277.59 Aligned_cols=177 Identities=24% Similarity=0.359 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH------HhCCCCeEEEEecchHHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR------RRSPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl------k~~p~~RILVcAPSNsAaD~LleRL 806 (961)
+||++|++||..++.... .++|+|||||||| +|++.+|..++ ....+.+||||++||.|+|+++++|
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT-----~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l 73 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNG--ITLIQGPPGTGKT-----TTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERL 73 (236)
T ss_dssp ---HHHHHHHHHHCTSSE---EEEE-STTSSHH-----HHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCC--CEEEECCCCCChH-----HHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHH
Confidence 489999999999998753 5899999999999 99999999884 2467899999999999999999999
Q ss_pred Hh------hCCCCceEecccccccccCccHHHHHhhh--------------------------------hcccccCC---
Q 002130 807 MK------DIPASEMFRANAAFREADGVSDEIFQVSL--------------------------------VERECFSC--- 845 (961)
Q Consensus 807 ~~------~l~~~~ilRV~a~sR~~~~V~~~I~~y~~--------------------------------~~~~~F~~--- 845 (961)
.+ ......++|++.... ..++++.+++. .....+..
T Consensus 74 ~~~~~~~~~~~~~~~ir~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (236)
T PF13086_consen 74 KKLLDEDGKVYKPKIIRLGSEEE---KIHEDLQKFSLESKLEQRFESKLKRLREQLEELQQKIRLSELKEEKKKLKKSIK 150 (236)
T ss_dssp HC--------TT--EEE---GGT---TS--TTGGGBHHHHHHTTT-----------THHHCHHHHHHHHHHHCCSSCHHH
T ss_pred Hhhccccccccccchhhhccccc---ccccccccccccccccccccccchhhhHHHHHHHHhhhhhhhhhhhhhcchhcc
Confidence 98 334568999988751 11111111110 00000000
Q ss_pred ------------ChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCC
Q 002130 846 ------------PPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAP 913 (961)
Q Consensus 846 ------------p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDp 913 (961)
-....+..++||+||+.++....... ....||+||||||+|++|+++|+||.. ...++||+|||
T Consensus 151 ~~~~~~~~~~~~~~~~~l~~~~vi~~T~~~~~~~~~~~-~~~~~d~vIvDEAsq~~e~~~l~~l~~---~~~~~vlvGD~ 226 (236)
T PF13086_consen 151 RLRKELEKIREELRRFILKEADVIFTTLSSAASPFLSN-FKEKFDVVIVDEASQITEPEALIPLSR---APKRIVLVGDP 226 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SEEEEETCGGG-CCGTT------SEEEETTGGGS-HHHHHHHHTT---TBSEEEEEE-T
T ss_pred cccccccccccchhhhhcccccccccccccchhhHhhh-hcccCCEEEEeCCCCcchHHHHHHHHH---hCCEEEEECCh
Confidence 01245678999999999985432211 122899999999999999999999972 23999999999
Q ss_pred CCCCccccCh
Q 002130 914 HNSPSRVRSD 923 (961)
Q Consensus 914 kQLpPvV~S~ 923 (961)
+||+|+|.|+
T Consensus 227 ~QLpP~v~s~ 236 (236)
T PF13086_consen 227 KQLPPVVKSE 236 (236)
T ss_dssp TS-----S--
T ss_pred hhcCCeeCCC
Confidence 9999999874
No 7
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=99.74 E-value=3.3e-18 Score=175.15 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
.||++|++||+.++...+ ...+|+|||||||| +++..++ ..++. .+.+|++|||||.|+++|.+++..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~-~~~~l~G~aGtGKT-----~~l~~~~-~~~~~-~g~~v~~~apT~~Aa~~L~~~~~~---- 68 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD-RVSVLQGPAGTGKT-----TLLKALA-EALEA-AGKRVIGLAPTNKAAKELREKTGI---- 68 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC-SEEEEEESTTSTHH-----HHHHHHH-HHHHH-TT--EEEEESSHHHHHHHHHHHTS----
T ss_pred CCCHHHHHHHHHHHhcCC-eEEEEEECCCCCHH-----HHHHHHH-HHHHh-CCCeEEEECCcHHHHHHHHHhhCc----
Confidence 489999999999997642 36799999999999 7766644 45554 379999999999999999988631
Q ss_pred CceEecccccccccCccHHHHHhhhhcc-cccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChH
Q 002130 813 SEMFRANAAFREADGVSDEIFQVSLVER-ECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 891 (961)
Q Consensus 813 ~~ilRV~a~sR~~~~V~~~I~~y~~~~~-~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP 891 (961)
... +|+. +..... ..+. .......+++||||||+++...
T Consensus 69 -~a~----------Ti~~----~l~~~~~~~~~-------------------------~~~~~~~~~vliVDEasmv~~~ 108 (196)
T PF13604_consen 69 -EAQ----------TIHS----FLYRIPNGDDE-------------------------GRPELPKKDVLIVDEASMVDSR 108 (196)
T ss_dssp --EE----------EHHH----HTTEECCEECC-------------------------SSCC-TSTSEEEESSGGG-BHH
T ss_pred -chh----------hHHH----HHhcCCccccc-------------------------ccccCCcccEEEEecccccCHH
Confidence 111 1111 100000 0000 0000235789999999987766
Q ss_pred HHHHHHhccccC-CCeEEEEeCCCCCCccccCh
Q 002130 892 ETMIVLGNLANE-NTRVIVTGAPHNSPSRVRSD 923 (961)
Q Consensus 892 EaLIPLa~LA~~-~trVVLaGDpkQLpPvV~S~ 923 (961)
....-+. ++.. +.+|||+||++||+||-.+.
T Consensus 109 ~~~~ll~-~~~~~~~klilvGD~~QL~pV~~g~ 140 (196)
T PF13604_consen 109 QLARLLR-LAKKSGAKLILVGDPNQLPPVGAGS 140 (196)
T ss_dssp HHHHHHH-HS-T-T-EEEEEE-TTSHHHCSTTC
T ss_pred HHHHHHH-HHHhcCCEEEEECCcchhcCCcCCc
Confidence 5444343 4444 78999999999999998765
No 8
>COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
Probab=99.71 E-value=9.5e-17 Score=190.47 Aligned_cols=203 Identities=24% Similarity=0.288 Sum_probs=145.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHH--HHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGN--VVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~--TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+..++..|..++...+.. .....+..|++||||| . ++.+.+.+.... ...+++.|+++|.++|.+..++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 344 (767)
T COG1112 272 NKELDNEQKLAVKRLLSL-NDLFLIHQGPFGTGKT-----RSVTILELIIELLEN-NKLKILPTAESNAAVDNLLRRLKR 344 (767)
T ss_pred chhccchhHHHHHHHhcc-cceeEeecCCCCCCcc-----hHHHHHHHHHHHHHh-cccceEEecCcccchhhHHHHHHh
Confidence 467899999999998876 3333344499999999 6 788888887775 378999999999999999999998
Q ss_pred hCCCCceEecccccccccCccHHHHH----------------------hhhh-----------------c--------cc
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQ----------------------VSLV-----------------E--------RE 841 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~----------------------y~~~-----------------~--------~~ 841 (961)
.......+|+....+....+...... +... . ..
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (767)
T COG1112 345 TVIKVELLRIGHPSRVLKKLKLDTLEELLEKHEIPGNKIAALDKVIRELREEGERIIREIAKLRERLERKRLDKISHLNV 424 (767)
T ss_pred hccccceEEcCCcchhhhhhhhhHHHHHHHhcccccchhHHHHHHHHHHhhhhhccceecHHHHhhhhhhHHHHHHHhhh
Confidence 55555566665543221111000000 0000 0 00
Q ss_pred ---cc----------------------C-------CChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 842 ---CF----------------------S-------CPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 842 ---~F----------------------~-------~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
.+ . .........+++|++|+..++.... ....||+||||||+|++
T Consensus 425 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~~~~---~~~~fd~viiDEAsQ~~ 501 (767)
T COG1112 425 ALRGILPALNKSEALWISLEEKQKKILKELRRLKKKAVTKILEAADVVLSTLSIAGFSIL---KKYEFDYVIIDEASQAT 501 (767)
T ss_pred hhcchhHHHHHHHHHHHhhhhhHHhHHHHHhHhHHHHHHHHHHhcCeEEEeccchhHHHh---cccccCEEEEcchhccc
Confidence 00 0 0001223345699999998875332 22379999999999999
Q ss_pred hHHHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHcC---------Cccccc
Q 002130 890 EPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT---------EAYRSC 947 (961)
Q Consensus 890 EPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~~---------~~Y~~~ 947 (961)
+|.+++|+.. ..++||+|||+||+|++.+..+...++..+||+|+... .+||||
T Consensus 502 ~~~~~~~l~~----~~~~il~GD~kQL~p~~~~~~~~~~~~~~slf~~~~~~~~~~~~~L~~qyRm~ 564 (767)
T COG1112 502 EPSALIALSR----AKKVILVGDHKQLPPTVFFKESSPEGLSASLFERLIDNGPEVVYLLRVQYRMH 564 (767)
T ss_pred chhHHHhHhh----cCeEEEecCCccCCCeecchhhcccchhHhHHHHHHHhCCchheeeeeecccC
Confidence 9999999982 69999999999999999987666789999999999983 678887
No 9
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=99.71 E-value=1.8e-17 Score=193.19 Aligned_cols=94 Identities=20% Similarity=0.184 Sum_probs=73.5
Q ss_pred hhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCcccc-ChHHHhc
Q 002130 850 ELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVR-SDIARKN 928 (961)
Q Consensus 850 ~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~-S~~A~k~ 928 (961)
.++.+.||..|..++.+.... +..-.-..|||.||+...|..++-.|. ....+|||+|||+||.|.-- -+.++.+
T Consensus 695 llR~a~vigmTTTgaaryr~i-lekv~pkivivEEAAEVlEahiIaal~---p~~EhviLIGDHKQLrP~~~vy~L~q~f 770 (1025)
T KOG1807|consen 695 LLREADVIGMTTTGAARYRFI-LEKVQPKIVIVEEAAEVLEAHIIAALT---PHTEHVILIGDHKQLRPFSGVYKLPQIF 770 (1025)
T ss_pred HhhccceeeeechhHHHHHHH-HHHhCCcEEEEhhHhHHhhcchhhhhc---ccceeEEEecchhhcCCCcchhhHhHhc
Confidence 356888999999988775432 223357789999999999988755444 45689999999999999853 3577789
Q ss_pred CCChhHHHHHHcC--------Cccccc
Q 002130 929 GLKMSYFERLCLT--------EAYRSC 947 (961)
Q Consensus 929 GL~~SLFERL~~~--------~~Y~~~ 947 (961)
||.+||||||.+. -+|||+
T Consensus 771 nL~iSlFERLVe~glpfsrLn~QhRM~ 797 (1025)
T KOG1807|consen 771 NLSISLFERLVEAGLPFSRLNLQHRMR 797 (1025)
T ss_pred chhHHHHHHHHHcCCChhhhhHHhhhc
Confidence 9999999999995 556666
No 10
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=99.64 E-value=1e-15 Score=180.04 Aligned_cols=198 Identities=21% Similarity=0.185 Sum_probs=111.9
Q ss_pred ChhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCc
Q 002130 688 NRVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPYPSLCPYS-NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVL 766 (961)
Q Consensus 688 NR~t~rR~h~ALd~l~~~ll~~iLFP~~~~~r~ip~~~~~~~~-n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTl 766 (961)
+|+.++|+|++-..+...+. +.+-..... .....+..++ ...-.+.|+.||..++... .++|.|+||||||
T Consensus 103 ~~lYl~r~~~~E~~ia~~l~-~~~~~~~~~---~~~~~l~~~~~~~~~~~~Qk~A~~~al~~~---~~vitGgpGTGKT- 174 (586)
T TIGR01447 103 GRLYLRRYWREEEKLAAKLR-TLLEARKRT---APSAILENLFPLLNEQNWQKVAVALALKSN---FSLITGGPGTGKT- 174 (586)
T ss_pred CEEEehHHHHHHHHHHHHHH-HHhccCCCC---cchHHHHHhhccccccHHHHHHHHHHhhCC---eEEEEcCCCCCHH-
Confidence 56778888888777654322 221111000 0000111111 1111378999999999864 6899999999999
Q ss_pred cchHHHHHHHHHHHHHhCC---CCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHHHHhhhhccccc
Q 002130 767 SKTGNVVREAVLQIRRRSP---KSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECF 843 (961)
Q Consensus 767 s~~g~TLVeaIlQLlk~~p---~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F 843 (961)
+|++.++..+.+..+ +.+|++||||+.||+.|.+.+...+.. +... +++..-....
T Consensus 175 ----t~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~-----l~~~--------~~~~~~~~~~---- 233 (586)
T TIGR01447 175 ----TTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKN-----LAAA--------EALIAALPSE---- 233 (586)
T ss_pred ----HHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcc-----cccc--------hhhhhccccc----
Confidence 888888776665432 258999999999999999998753211 1100 0000000000
Q ss_pred CCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCccccC
Q 002130 844 SCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRS 922 (961)
Q Consensus 844 ~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S 922 (961)
..+...+.. ..... ..+....-....+|+||||||++...+. |--|......++|+||+||+.||+||-..
T Consensus 234 -a~TiHrlLg-----~~~~~-~~~~~~~~~~l~~dvlIiDEaSMvd~~l-~~~ll~al~~~~rlIlvGD~~QLpsV~~G 304 (586)
T TIGR01447 234 -AVTIHRLLG-----IKPDT-KRFRHHERNPLPLDVLVVDEASMVDLPL-MAKLLKALPPNTKLILLGDKNQLPSVEAG 304 (586)
T ss_pred -cchhhhhhc-----ccCCc-chhhhcccCCCcccEEEEcccccCCHHH-HHHHHHhcCCCCEEEEECChhhCCCCCCC
Confidence 000000000 00000 0011111123479999999999877653 33333233467999999999999999433
No 11
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=99.62 E-value=1.8e-15 Score=178.67 Aligned_cols=198 Identities=14% Similarity=0.093 Sum_probs=113.2
Q ss_pred eChhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHhccCCCCceEeccCCCCC
Q 002130 687 FNRVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPYPSLCPYSN--YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNF 764 (961)
Q Consensus 687 lNR~t~rR~h~ALd~l~~~ll~~iLFP~~~~~r~ip~~~~~~~~n--~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGK 764 (961)
-+|+.++|+|++-..+...+ .+..-+........ ...+..++. ..+.+.|+.||..++... ..+|.|+|||||
T Consensus 106 ~~~lYl~ry~~~E~~iA~~l-~~~~~~~~~~~~~~-~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~---~~vItGgpGTGK 180 (615)
T PRK10875 106 GDRLYLQRMWQNERTVARFF-NEVNHAIEVDEALL-RQTLDALFGPVTDEVDWQKVAAAVALTRR---ISVISGGPGTGK 180 (615)
T ss_pred CCEEEeHHHHHHHHHHHHHH-HHhccCCCCChHHH-HHHHHHhcCcCCCCCHHHHHHHHHHhcCC---eEEEEeCCCCCH
Confidence 35678888888877766432 22221110000000 000011111 123479999999998754 689999999999
Q ss_pred CccchHHHHHHHHHHHHHhC--CCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccH---HHHHhhhhc
Q 002130 765 VLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSD---EIFQVSLVE 839 (961)
Q Consensus 765 Tls~~g~TLVeaIlQLlk~~--p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~---~I~~y~~~~ 839 (961)
| +|++.++..+++.. ...+|++||||+.||..|.+++...+.. +.........++. .|..+..+
T Consensus 181 T-----t~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~-----~~~~~~~~~~~~~~a~TiHrlLg~- 249 (615)
T PRK10875 181 T-----TTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQ-----LPLTDEQKKRIPEEASTLHRLLGA- 249 (615)
T ss_pred H-----HHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhc-----cccchhhhhcCCCchHHHHHHhCc-
Confidence 9 88888877766542 3468999999999999999998753221 1100000000110 01111110
Q ss_pred ccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCcc
Q 002130 840 RECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSR 919 (961)
Q Consensus 840 ~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpPv 919 (961)
.... ..+....-....+|+||||||++.--+....-|. ....++||||+||++||+||
T Consensus 250 --------------------~~~~-~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~-al~~~~rlIlvGD~~QL~sV 307 (615)
T PRK10875 250 --------------------QPGS-QRLRYHAGNPLHLDVLVVDEASMVDLPMMARLID-ALPPHARVIFLGDRDQLASV 307 (615)
T ss_pred --------------------CCCc-cchhhccccCCCCCeEEEChHhcccHHHHHHHHH-hcccCCEEEEecchhhcCCC
Confidence 0000 0011111123468999999999876543332233 33467999999999999998
Q ss_pred ccC
Q 002130 920 VRS 922 (961)
Q Consensus 920 V~S 922 (961)
=..
T Consensus 308 ~~G 310 (615)
T PRK10875 308 EAG 310 (615)
T ss_pred CCC
Confidence 443
No 12
>KOG1804 consensus RNA helicase [RNA processing and modification]
Probab=99.50 E-value=3.3e-15 Score=178.27 Aligned_cols=253 Identities=23% Similarity=0.298 Sum_probs=195.5
Q ss_pred CCCCcEEEEEeeChhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHHHHhc--cC
Q 002130 676 QPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNYLFPDCASRKSIPYPS---LCPYSNYKLDSDSNSAVHQILSF--EG 750 (961)
Q Consensus 676 ~~~~~~~V~F~lNR~t~rR~h~ALd~l~~~ll~~iLFP~~~~~r~ip~~~---~~~~~n~~LN~eQr~AV~~ILs~--~~ 750 (961)
.....+++.|..++..++.++.|++.+.. ..+.|+.......+.... ..+.....+|..|+.|+..+.-. +.
T Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e 139 (775)
T KOG1804|consen 63 DIELEVELQFQLNRAPLCESSFAVERISD---STYKFPFSSLLPSIEWYPEVQWAEKCEPRLNALQKGALLAITVPLLRE 139 (775)
T ss_pred CCcchhhHHHhhhhhhhccccchhhhccc---ccceeeeeccCCCCCCccccccchhcchhhhhhhcccccceecccccc
Confidence 34556788888899999999999999874 233333322211122211 22233567899999998876543 34
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh-----CCCCceEecccccccc
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD-----IPASEMFRANAAFREA 825 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~-----l~~~~ilRV~a~sR~~ 825 (961)
..|.|+.|+ |+|+| .+++..+....... ..++++|.+++.|+|..+..+... ++...-+|+....|.+
T Consensus 140 ~~P~L~~G~-~~~~~-----~~~~~~~~~~~~~~-~~k~~~~l~~~~~~~~~ir~y~~~~v~~~~~~~~~~r~~~~~r~l 212 (775)
T KOG1804|consen 140 LPPSLLIGP-GTGET-----LELAQAVKSLLQQE-EAKILILLHSESAADIYIREYLHPYVEEGLPEATPLRVYSRKRPL 212 (775)
T ss_pred CCcccccCC-ccccc-----eeecchhhcccccc-cccceEeechhHHHHHHHHHhhcccccccccccccccceeecccc
Confidence 568999999 99999 78888888777654 889999999999999999998762 2233445999988888
Q ss_pred cCccHHHHHhhhhc--ccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHhccccC
Q 002130 826 DGVSDEIFQVSLVE--RECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANE 903 (961)
Q Consensus 826 ~~V~~~I~~y~~~~--~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~ 903 (961)
...++-+.+||..- ...|..|...++.+|||++.|......+...+...+.|+|+++|||+|+++++.+.||+ ++..
T Consensus 213 ~~~~pvv~~~~~if~~~~~~~~pq~~~~~~Hrv~~~~~~~s~~~~~l~~~~~~~t~~~~~eaae~~~~~~l~P~~-~~~~ 291 (775)
T KOG1804|consen 213 AQVNPVVLQYCFIFDSHITFRRPQVEDLFKHRVVVVTLSQSQYLTPLGLPVGFFTHILLDEAAQAMECELLMPLA-LPSS 291 (775)
T ss_pred cccCCceeeeeeeccchhhhccchhhhhcccceeEeecceeecccccCCCCCceeeeeHHHHHhcCCceeecccc-cCCC
Confidence 88888888887442 35566688888888999999999888777778889999999999999999999999998 7788
Q ss_pred CCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHc
Q 002130 904 NTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL 940 (961)
Q Consensus 904 ~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~ 940 (961)
+++++|+||+.||-|.+.+...++..+. .|..|+..
T Consensus 292 ~~~~~L~~~~~ql~~~l~s~~~~~~~~~-~~~~~~~~ 327 (775)
T KOG1804|consen 292 GTRIVLAGPHLQLTPFLNSVAREEQALH-LLLCRLPE 327 (775)
T ss_pred Cceeeecccccccccchhhhhhhhhhhh-hccccccc
Confidence 9999999999999999999887766665 44444433
No 13
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=99.46 E-value=2.2e-13 Score=163.92 Aligned_cols=140 Identities=13% Similarity=0.129 Sum_probs=91.2
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCC-CCeEEEEecchHHHHHHHHHHHhh
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-KSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p-~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
...||++|++||+.++... .++|.|+|||||| |++.+|++++.... ..+|++||||+.||+.|.+.+..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~---~~iitGgpGTGKT------t~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~- 390 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHK---VVILTGGPGTGKT------TITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGL- 390 (720)
T ss_pred CCCCCHHHHHHHHHHHhCC---eEEEECCCCCCHH------HHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCC-
Confidence 3579999999999997643 6899999999999 44556666666532 27899999999999977665421
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
. ..+++.- ..+..+.. . ..... ....+|+||||||++.-
T Consensus 391 -~-------------a~Tih~l----L~~~~~~~--------------------~--~~~~~-~~~~~~llIvDEaSMvd 429 (720)
T TIGR01448 391 -T-------------ASTIHRL----LGYGPDTF--------------------R--HNHLE-DPIDCDLLIVDESSMMD 429 (720)
T ss_pred -c-------------cccHHHH----hhccCCcc--------------------c--hhhhh-ccccCCEEEEeccccCC
Confidence 1 1122211 11100000 0 00000 12368999999998765
Q ss_pred hHHHHHHHhccccCCCeEEEEeCCCCCCccccC
Q 002130 890 EPETMIVLGNLANENTRVIVTGAPHNSPSRVRS 922 (961)
Q Consensus 890 EPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S 922 (961)
.. .+.-|......+.||||+||+.||+||-..
T Consensus 430 ~~-~~~~Ll~~~~~~~rlilvGD~~QLpsV~~G 461 (720)
T TIGR01448 430 TW-LALSLLAALPDHARLLLVGDTDQLPSVGPG 461 (720)
T ss_pred HH-HHHHHHHhCCCCCEEEEECccccccCCCCC
Confidence 44 444443333467899999999999998654
No 14
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=99.45 E-value=2.6e-13 Score=163.88 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=91.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..||++|++||..++... ..++|.|+|||||| |++.+|.++++. .+.+|++||||+.||+.|.+... +.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~--~~~il~G~aGTGKT------tll~~i~~~~~~-~g~~V~~~ApTg~Aa~~L~~~~g--~~ 419 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSG--DIAVVVGRAGTGKS------TMLKAAREAWEA-AGYRVIGAALSGKAAEGLQAESG--IE 419 (744)
T ss_pred CCCCHHHHHHHHHHhcCC--CEEEEEecCCCCHH------HHHHHHHHHHHh-CCCeEEEEeCcHHHHHHHHhccC--Cc
Confidence 579999999999998753 36899999999999 455566666665 47899999999999988875432 10
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChH
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 891 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP 891 (961)
. .+++.-+..+ . .........|+||||||++.-..
T Consensus 420 a-------------~Ti~~~~~~~--------~------------------------~~~~~~~~~~llIvDEasMv~~~ 454 (744)
T TIGR02768 420 S-------------RTLASLEYAW--------A------------------------NGRDLLSDKDVLVIDEAGMVGSR 454 (744)
T ss_pred e-------------eeHHHHHhhh--------c------------------------cCcccCCCCcEEEEECcccCCHH
Confidence 0 0111111100 0 00001236789999999986544
Q ss_pred HHHHHHhccc-cCCCeEEEEeCCCCCCccccCh
Q 002130 892 ETMIVLGNLA-NENTRVIVTGAPHNSPSRVRSD 923 (961)
Q Consensus 892 EaLIPLa~LA-~~~trVVLaGDpkQLpPvV~S~ 923 (961)
. +--|...+ ..+.+|||+||++||+||-...
T Consensus 455 ~-~~~Ll~~~~~~~~kliLVGD~~QLpsVgaG~ 486 (744)
T TIGR02768 455 Q-MARVLKEAEEAGAKVVLVGDPEQLQPIEAGA 486 (744)
T ss_pred H-HHHHHHHHHhcCCEEEEECChHHccccccCc
Confidence 3 33333222 3578999999999999987654
No 15
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=99.40 E-value=8.4e-13 Score=162.65 Aligned_cols=134 Identities=9% Similarity=-0.005 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..||++|++||..|+...+ .++|+|+|||||| ++ +.++.++++. .+.+|++||||+.||..|.+..- +.
T Consensus 345 ~~Ls~eQr~Av~~il~s~~--v~vv~G~AGTGKT-----T~-l~~~~~~~e~-~G~~V~~~ApTGkAA~~L~e~tG--i~ 413 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRD--LGVVVGYAGTGKS-----AM-LGVAREAWEA-AGYEVRGAALSGIAAENLEGGSG--IA 413 (988)
T ss_pred CCCCHHHHHHHHHHhcCCC--eEEEEeCCCCCHH-----HH-HHHHHHHHHH-cCCeEEEecCcHHHHHHHhhccC--cc
Confidence 4699999999999997543 5789999999999 54 5666777765 47899999999999988764321 10
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChH
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 891 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP 891 (961)
.+ +|..-+.. |.. + .......++|||||||++-.-
T Consensus 414 ----------a~---TI~sll~~--------~~~-------------------~-----~~~l~~~~vlIVDEASMv~~~ 448 (988)
T PRK13889 414 ----------SR---TIASLEHG--------WGQ-------------------G-----RDLLTSRDVLVIDEAGMVGTR 448 (988)
T ss_pred ----------hh---hHHHHHhh--------hcc-------------------c-----ccccccCcEEEEECcccCCHH
Confidence 01 11111000 000 0 001235789999999976544
Q ss_pred HHHHHHhccc-cCCCeEEEEeCCCCCCccccC
Q 002130 892 ETMIVLGNLA-NENTRVIVTGAPHNSPSRVRS 922 (961)
Q Consensus 892 EaLIPLa~LA-~~~trVVLaGDpkQLpPvV~S 922 (961)
. |--|...+ ..+.+||||||++||+||-..
T Consensus 449 ~-m~~LL~~a~~~garvVLVGD~~QLpsV~aG 479 (988)
T PRK13889 449 Q-LERVLSHAADAGAKVVLVGDPQQLQAIEAG 479 (988)
T ss_pred H-HHHHHHhhhhCCCEEEEECCHHHcCCCCCC
Confidence 3 33333223 457899999999999998443
No 16
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=99.36 E-value=2.2e-12 Score=159.93 Aligned_cols=135 Identities=10% Similarity=0.090 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..||++|++||..++.. ....+|+|++||||| |++.++.++++. .+.+|+.||||+.||..|.+... +.
T Consensus 380 ~~Ls~eQ~~Av~~i~~~--~r~~~v~G~AGTGKT------t~l~~~~~~~e~-~G~~V~g~ApTgkAA~~L~e~~G--i~ 448 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGP--ARIAAVVGRAGAGKT------TMMKAAREAWEA-AGYRVVGGALAGKAAEGLEKEAG--IQ 448 (1102)
T ss_pred CCCCHHHHHHHHHHhcc--CCeEEEEeCCCCCHH------HHHHHHHHHHHH-cCCeEEEEcCcHHHHHHHHHhhC--CC
Confidence 47999999999998643 236799999999999 455566666765 48899999999999988865432 11
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChH
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 891 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP 891 (961)
. + +|..-+.. +..+ ...-..-++|||||||++-..
T Consensus 449 a----------~---TIas~ll~---~~~~-----------------------------~~~l~~~~vlVIDEAsMv~~~ 483 (1102)
T PRK13826 449 S----------R---TLSSWELR---WNQG-----------------------------RDQLDNKTVFVLDEAGMVASR 483 (1102)
T ss_pred e----------e---eHHHHHhh---hccC-----------------------------ccCCCCCcEEEEECcccCCHH
Confidence 1 1 11111110 0000 001123578999999987655
Q ss_pred HHHHHHhccc-cCCCeEEEEeCCCCCCccccCh
Q 002130 892 ETMIVLGNLA-NENTRVIVTGAPHNSPSRVRSD 923 (961)
Q Consensus 892 EaLIPLa~LA-~~~trVVLaGDpkQLpPvV~S~ 923 (961)
...--|. .+ ..+.+||||||++||+||-...
T Consensus 484 ~m~~Ll~-~~~~~garvVLVGD~~QL~~V~aG~ 515 (1102)
T PRK13826 484 QMALFVE-AVTRAGAKLVLVGDPEQLQPIEAGA 515 (1102)
T ss_pred HHHHHHH-HHHhcCCEEEEECCHHHcCCCCCCc
Confidence 4433333 33 3578999999999999987654
No 17
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=99.31 E-value=2.6e-12 Score=153.67 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
.||++|++||... .+|++|.|+|||||| +||+..|..++.. .+..+||+.|+||.||++|.+||...+
T Consensus 2 ~Ln~~Q~~av~~~-----~g~~lV~AgpGSGKT-----~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV-----TGPCLVLAGAGSGKT-----RVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC-----CCCEEEEecCCCCHH-----HHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 5999999999863 357899999999999 9999999999964 345799999999999999999998755
Q ss_pred C
Q 002130 811 P 811 (961)
Q Consensus 811 ~ 811 (961)
+
T Consensus 72 ~ 72 (672)
T PRK10919 72 G 72 (672)
T ss_pred C
Confidence 4
No 18
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.31 E-value=4.5e-12 Score=161.15 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH---hCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR---RSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk---~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..||+.|++||..||...+ .+++|+|.|||||| ++| .+|+++++ ...+.+|+.+|||+.||+.|.+.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~d-r~~~IqG~AGTGKT-----T~l-~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~--- 903 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSD-RFTVVQGYAGVGKT-----TQF-RAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSA--- 903 (1623)
T ss_pred cccCHHHHHHHHHHHhCCC-ceEEEEeCCCCCHH-----HHH-HHHHHHHHHHhhccCceEEEEechHHHHHHHHHh---
Confidence 4799999999999997643 37899999999999 443 33333332 23467899999999999998642
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQA 888 (961)
.+....+-|+ .... ..+. ..........++|||||||+.
T Consensus 904 Gi~A~TIasf-----------------L~~~-~~~~-----------------------~~~~~~~~~~~llIVDEASMV 942 (1623)
T PRK14712 904 GVDAQTLASF-----------------LHDT-QLQQ-----------------------RSGETPDFSNTLFLLDESSMV 942 (1623)
T ss_pred CchHhhHHHH-----------------hccc-cchh-----------------------hcccCCCCCCcEEEEEccccc
Confidence 2111111111 1000 0000 000001124689999999988
Q ss_pred ChHHHHHHHhccccCCCeEEEEeCCCCCCccccCh
Q 002130 889 TEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSD 923 (961)
Q Consensus 889 tEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~ 923 (961)
-......-+..+...+.||||+||++||+||-...
T Consensus 943 ~~~~m~~ll~~~~~~garvVLVGD~~QL~sV~aG~ 977 (1623)
T PRK14712 943 GNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQ 977 (1623)
T ss_pred cHHHHHHHHHhhhhCCCEEEEEcchhhcCCCCCCH
Confidence 76554333332223468999999999999987654
No 19
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=99.30 E-value=1.7e-12 Score=155.52 Aligned_cols=201 Identities=21% Similarity=0.293 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh-hCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK-DIP 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~-~l~ 811 (961)
..|..|-+|+. ++..++.+++.|||||||| .+.+.+|--++...+..|-||+++||.|-+.+.+++.+ .+.
T Consensus 738 ~ft~~qveai~---sg~qpgltmvvgppgtgkt-----d~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~d 809 (1320)
T KOG1806|consen 738 KFTPTQVEAIL---SGMQPGLTMVVGPPGTGKT-----DVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDVD 809 (1320)
T ss_pred ccCHHHHHHHH---hcCCCCceeeecCCCCCCc-----chhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcccc
Confidence 34778877754 4555667899999999999 88888888888888999999999999999999999987 233
Q ss_pred CCceEecc-------------------ccc-ccc------c------CccHHHH-----------------------Hh-
Q 002130 812 ASEMFRAN-------------------AAF-REA------D------GVSDEIF-----------------------QV- 835 (961)
Q Consensus 812 ~~~ilRV~-------------------a~s-R~~------~------~V~~~I~-----------------------~y- 835 (961)
...++|++ ++- |.+ + .++.++. +.
T Consensus 810 ~rhLlrlg~ge~eletd~dfsrygrvn~~l~~r~~ll~ev~rla~sl~~pgdv~ytcetagyf~~~~V~~~wee~l~~v~ 889 (1320)
T KOG1806|consen 810 ERHLLRLGHGEEELETDKDFSRYGRVNYVLSRRLELLREVERLAKSLQAPGDVDYTCETAGYFFLAYVKRRWEEYLAKVD 889 (1320)
T ss_pred hhhHHHhcccHHhhhcccchhheeeEeeeeccchHHHHHHHHhhhhhcCccccccccchhhhhhhhHHHhhhHHHHHHhc
Confidence 33344433 110 000 0 0000000 00
Q ss_pred ---hh--hc--------------------------------ccccC----------------CChh-------hhhccce
Q 002130 836 ---SL--VE--------------------------------RECFS----------------CPPL-------EELRQYK 855 (961)
Q Consensus 836 ---~~--~~--------------------------------~~~F~----------------~p~~-------e~L~~~r 855 (961)
|+ +. +++|+ .+.. -...+++
T Consensus 890 ~~~~~~~~~~~~~~fpf~~~f~d~p~~vfeg~n~~~d~~~a~~cf~hl~~ifqqLee~rafellr~~~dr~~Yll~kqak 969 (1320)
T KOG1806|consen 890 KGCDKDSVDIVSNRFPFHSYFGDKPKPPFEGYNKENDMDYATGCFRHLEYIFQQLEEFRAFELLRSGEDRELYLLVKQAK 969 (1320)
T ss_pred cCCCchhhhhHhhhCcchhhhhcCCCccccccchhhhhhhhhhhHHHHHHHHHHHHhcccccccccchhHhhccCcccce
Confidence 00 00 01110 0000 0124778
Q ss_pred EEEEeeccchhhhccCCCCC-CccEEEEecCCCCChHHHHHHHhccccC-----CCeEEEEeCCCCCCccccC-hHHHhc
Q 002130 856 VISSTFVSSFRLHNQGITAG-HFSHIFLIDASSATEPETMIVLGNLANE-----NTRVIVTGAPHNSPSRVRS-DIARKN 928 (961)
Q Consensus 856 VVvtT~ssag~L~~~~~~~g-~FdhVIIDEASQAtEPEaLIPLa~LA~~-----~trVVLaGDpkQLpPvV~S-~~A~k~ 928 (961)
||.+||..+..-...-+..| .||-+++.|++|..|-|+.||+...... .+|+||+|||.||||++.+ +.+...
T Consensus 970 iiamtcthaalkr~el~~lgf~ydnl~mEesaqile~etfiplLlq~p~dg~~rlkr~iligdhhqlPPv~~n~afqkys 1049 (1320)
T KOG1806|consen 970 IIAMTCTHAALRRGDLVKLGFKYDNLLMEESAQILEIETFIPLLLQNPQDGHNRLKRWILIGDHHQLPPVVKNQAFQKYS 1049 (1320)
T ss_pred eeecccCChhhChhhHhhhceeechhhhhhccCCcccccccHHHhcCCcchhhHhhheeecccccccCCcccchHHHHHh
Confidence 99999998864322222233 5899999999999999999999844432 3699999999999999954 567777
Q ss_pred CCChhHHHHHHcC
Q 002130 929 GLKMSYFERLCLT 941 (961)
Q Consensus 929 GL~~SLFERL~~~ 941 (961)
.+++|||.|+...
T Consensus 1050 nm~qslf~r~vRl 1062 (1320)
T KOG1806|consen 1050 NMEQSLFTRLVRL 1062 (1320)
T ss_pred cchhhhhhcceec
Confidence 8999999999874
No 20
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=99.28 E-value=8.5e-12 Score=160.21 Aligned_cols=140 Identities=13% Similarity=0.103 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh---CCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR---SPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~---~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..||+.|++||..+|...+ ...+|+|.|||||| |++.+|..+++. ..+.+|+.||||+.||..|.+ .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~d-r~~~I~G~AGTGKT------T~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e---~ 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTD-RFTVVQGYAGVGKT------TQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS---A 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCC-cEEEEEeCCCCCHH------HHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh---c
Confidence 4689999999999997642 37899999999999 444455445432 235689999999999987754 1
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQA 888 (961)
.+... +|+.-+. .. ..+. ...+......++|||||||+.
T Consensus 1036 Gi~A~-------------TI~s~L~----~~-~~~~-----------------------~~~~~~~~~~~llIVDEaSMv 1074 (1747)
T PRK13709 1036 GVDAQ-------------TLASFLH----DT-QLQQ-----------------------RSGETPDFSNTLFLLDESSMV 1074 (1747)
T ss_pred Ccchh-------------hHHHHhc----cc-cccc-----------------------ccccCCCCCCcEEEEEccccc
Confidence 11111 1111111 00 0000 000011124589999999987
Q ss_pred ChHHHHHHHhcccc-CCCeEEEEeCCCCCCccccCh
Q 002130 889 TEPETMIVLGNLAN-ENTRVIVTGAPHNSPSRVRSD 923 (961)
Q Consensus 889 tEPEaLIPLa~LA~-~~trVVLaGDpkQLpPvV~S~ 923 (961)
-.....--|. ++. .+.|||||||.+||+||-...
T Consensus 1075 ~~~~m~~Ll~-~~~~~garvVLVGD~~QL~sV~aG~ 1109 (1747)
T PRK13709 1075 GNTDMARAYA-LIAAGGGRAVSSGDTDQLQAIAPGQ 1109 (1747)
T ss_pred cHHHHHHHHH-hhhcCCCEEEEecchHhcCCCCCCh
Confidence 6655443333 333 468999999999999986543
No 21
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=99.28 E-value=9.6e-12 Score=149.51 Aligned_cols=70 Identities=10% Similarity=0.043 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..||++|++||... .+|++|.|.|||||| +||+..|..+++. .+..+||++|+||.||++|.+|+.+.
T Consensus 3 ~~Ln~~Q~~av~~~-----~g~~lV~AgaGSGKT-----~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAAP-----PGNLLVLAGAGSGKT-----RVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcCC-----CCCEEEEecCCCCHH-----HHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 36999999999753 347899999999999 9999999999974 35679999999999999999999885
Q ss_pred CC
Q 002130 810 IP 811 (961)
Q Consensus 810 l~ 811 (961)
++
T Consensus 73 ~~ 74 (715)
T TIGR01075 73 LG 74 (715)
T ss_pred hc
Confidence 54
No 22
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=99.26 E-value=6.4e-12 Score=151.27 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..||++|++||... .+|++|.|+|||||| +||+..|..++.. .+..+||+.|+||.||++|.+|+.+.
T Consensus 8 ~~Ln~~Q~~av~~~-----~g~~lV~AgaGSGKT-----~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP-----LGNMLVLAGAGSGKT-----RVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC-----CCCEEEEecCCCCHH-----HHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 36999999999853 347899999999999 9999999999864 35679999999999999999999885
Q ss_pred CC
Q 002130 810 IP 811 (961)
Q Consensus 810 l~ 811 (961)
++
T Consensus 78 ~~ 79 (721)
T PRK11773 78 LG 79 (721)
T ss_pred hc
Confidence 54
No 23
>KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification]
Probab=99.25 E-value=8.6e-12 Score=152.23 Aligned_cols=99 Identities=24% Similarity=0.246 Sum_probs=84.5
Q ss_pred cceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCCh
Q 002130 853 QYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKM 932 (961)
Q Consensus 853 ~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~ 932 (961)
.+.+|+||+.+.+....+. ....|+.++||||+|+.||+.++||+ ++ +.++.||+||+.|||++|.|..|..++++.
T Consensus 514 ~a~~i~~t~~~~~~~~~~~-~~~p~~~vviDeaaq~~e~~s~~PL~-l~-g~~~~~lvgd~~qlP~~V~s~~~~~~k~~~ 590 (827)
T KOG1801|consen 514 EAALIVPTTRGSRIVLTLY-GGPPLDTVVIDEAAQKYEPSSLEPLQ-LA-GYQHCILVGDLAQLPATVHSSPAGCFKYMT 590 (827)
T ss_pred cceeEeecccccceEeecc-cCCCceEEEEehhhhhcCccchhhhh-hc-CCceEEEecccccCChhhccchhccccchh
Confidence 7889999999887633322 34579999999999999999999999 54 779999999999999999999999999999
Q ss_pred hHHHHHHcC--------Cccccc-------Cchhhhh
Q 002130 933 SYFERLCLT--------EAYRSC-------NSMFFSQ 954 (961)
Q Consensus 933 SLFERL~~~--------~~Y~~~-------np~fITK 954 (961)
|||+||... -+|+|| +-.|+.+
T Consensus 591 slf~rl~l~~~~~~~L~vqyrmhp~Is~fP~~~fy~~ 627 (827)
T KOG1801|consen 591 SLFERLELAGHKTLLLTVQYRMHPEISRFPSKEFYGG 627 (827)
T ss_pred hHHHHHHHccCccceecceeecCCccccCcccccccc
Confidence 999999874 378888 6666665
No 24
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=99.21 E-value=1e-11 Score=149.51 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..||++|++||... .+|++|.|+|||||| +||++.|..++.. ....+||+.|+||.||++|.+|+.+.
T Consensus 3 ~~Ln~~Q~~av~~~-----~g~~lV~AgaGSGKT-----~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKTT-----EGPLLIMAGAGSGKT-----RVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhCC-----CCCEEEEeCCCCCHH-----HHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 36999999999853 357899999999999 9999999999974 24579999999999999999999875
Q ss_pred CC
Q 002130 810 IP 811 (961)
Q Consensus 810 l~ 811 (961)
++
T Consensus 73 ~~ 74 (726)
T TIGR01073 73 LG 74 (726)
T ss_pred hc
Confidence 43
No 25
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.21 E-value=6.1e-11 Score=155.16 Aligned_cols=147 Identities=12% Similarity=0.140 Sum_probs=96.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..||++|++||..+|... ....+|+|+|||||| |++.+|.++++. .+.+|++||||+.||..|.+.+.. .
T Consensus 428 ~~Ls~~Q~~Av~~il~s~-~~v~ii~G~aGTGKT------t~l~~l~~~~~~-~G~~V~~lAPTgrAA~~L~e~~g~--~ 497 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTST-KRFIIINGFGGTGST------EIAQLLLHLASE-QGYEIQIITAGSLSAQELRQKIPR--L 497 (1960)
T ss_pred CCCCHHHHHHHHHHHhCC-CCeEEEEECCCCCHH------HHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHhcc--h
Confidence 479999999999999864 236899999999999 556666777775 488999999999999999877532 1
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChH
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 891 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP 891 (961)
...+.|+ +.. ......+ .| ...|.....+-..-++||||||+++.-.
T Consensus 498 A~Ti~~~-------------l~~--l~~~~~~---------------~t---v~~fl~~~~~l~~~~vlIVDEAsMl~~~ 544 (1960)
T TIGR02760 498 ASTFITW-------------VKN--LFNDDQD---------------HT---VQGLLDKSSPFSNKDIFVVDEANKLSNN 544 (1960)
T ss_pred hhhHHHH-------------HHh--hcccccc---------------hh---HHHhhcccCCCCCCCEEEEECCCCCCHH
Confidence 1111111 110 0000000 00 0000011111135689999999987766
Q ss_pred HHHHHHhccc-cCCCeEEEEeCCCCCCccccC
Q 002130 892 ETMIVLGNLA-NENTRVIVTGAPHNSPSRVRS 922 (961)
Q Consensus 892 EaLIPLa~LA-~~~trVVLaGDpkQLpPvV~S 922 (961)
+..--|. .+ ..+.||||+||+.||++|=..
T Consensus 545 ~~~~Ll~-~a~~~garvVlvGD~~QL~sV~aG 575 (1960)
T TIGR02760 545 ELLKLID-KAEQHNSKLILLNDSAQRQGMSAG 575 (1960)
T ss_pred HHHHHHH-HHhhcCCEEEEEcChhhcCccccc
Confidence 6544443 44 467999999999999997443
No 26
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=99.20 E-value=2.2e-11 Score=144.81 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
.||++|++||... .++++|.|+|||||| +||+..|..+++. .+..+||++|+||.||+++.+||.+.+
T Consensus 1 ~Ln~~Q~~av~~~-----~~~~~V~Ag~GSGKT-----~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEYV-----TGPCLVLAGAGSGKT-----RVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhCC-----CCCEEEEecCCCCHH-----HHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4899999998753 347899999999999 9999999999964 255799999999999999999998865
Q ss_pred C
Q 002130 811 P 811 (961)
Q Consensus 811 ~ 811 (961)
+
T Consensus 71 ~ 71 (664)
T TIGR01074 71 G 71 (664)
T ss_pred C
Confidence 4
No 27
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=99.18 E-value=7.6e-11 Score=131.68 Aligned_cols=63 Identities=16% Similarity=0.313 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHhc---cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHH
Q 002130 733 KLDSDSNSAVHQILSF---EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKL 802 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~---~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~L 802 (961)
.||++|+.++..|+.. .....+.|.|+.||||| +++.+|.+.++. .+..|++||+|..||-+|
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs------~l~~~i~~~~~~-~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKS------FLIKAIIDYLRS-RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChh------HHHHHHHHHhcc-ccceEEEecchHHHHHhc
Confidence 4899999999988654 23345789999999999 555666666654 578999999999999887
No 28
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.18 E-value=6.8e-11 Score=154.77 Aligned_cols=138 Identities=13% Similarity=0.126 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHH---HHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVR---EAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLV---eaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..||++|++||..|+...+ ..++|+|++||||| ++|. .+|.++++. .+.+|+.+||||.||+.|.+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~-~~~~i~G~AGtGKT-----t~l~~~~~~i~~~~~~-~g~~v~glApT~~Aa~~L~~~--- 1087 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKD-RFVAVQGLAGVGKT-----TMLESRYKPVLQAFES-EQLQVIGLAPTHEAVGELKSA--- 1087 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCC-cEEEEEeCCCCCHH-----HhHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHhc---
Confidence 4699999999999997653 36799999999999 5553 455666654 477999999999999998641
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQA 888 (961)
.+.. .+|. .+.. ....+. ... ....-+++||||||+.
T Consensus 1088 g~~a-------------~Ti~----s~l~-~~~~~~-----------------------~~~--~~~~~~v~ivDEasMv 1124 (1960)
T TIGR02760 1088 GVQA-------------QTLD----SFLT-DISLYR-----------------------NSG--GDFRNTLFILDESSMV 1124 (1960)
T ss_pred CCch-------------HhHH----HHhc-Cccccc-----------------------ccC--CCCcccEEEEEccccc
Confidence 1111 1111 1100 000000 000 1124589999999987
Q ss_pred ChHHHHHHHhccccCCCeEEEEeCCCCCCccccC
Q 002130 889 TEPETMIVLGNLANENTRVIVTGAPHNSPSRVRS 922 (961)
Q Consensus 889 tEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S 922 (961)
-.....--+......+.|+||+||++||+||=..
T Consensus 1125 ~~~~~~~l~~~~~~~~ak~vlvGD~~QL~sV~aG 1158 (1960)
T TIGR02760 1125 SNFQLTHATELVQKSGSRAVSLGDIAQLQSLAAG 1158 (1960)
T ss_pred cHHHHHHHHHhccCCCCEEEEeCChhhcCCCCCC
Confidence 6654433333222456899999999999997543
No 29
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=99.14 E-value=2.2e-10 Score=119.79 Aligned_cols=170 Identities=18% Similarity=0.216 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
.+|.+|+.++..++... .+++.||+||||| ...+++.++++......||+++-|.-.+ -+.+- ++++
T Consensus 4 p~~~~Q~~~~~al~~~~---~v~~~G~AGTGKT-----~LA~a~Al~~v~~g~~~kiii~Rp~v~~----~~~lG-flpG 70 (205)
T PF02562_consen 4 PKNEEQKFALDALLNND---LVIVNGPAGTGKT-----FLALAAALELVKEGEYDKIIITRPPVEA----GEDLG-FLPG 70 (205)
T ss_dssp --SHHHHHHHHHHHH-S---EEEEE--TTSSTT-----HHHHHHHHHHHHTTS-SEEEEEE-S--T----T-----SS--
T ss_pred CCCHHHHHHHHHHHhCC---eEEEECCCCCcHH-----HHHHHHHHHHHHhCCCcEEEEEecCCCC----ccccc-cCCC
Confidence 46999999999999443 6799999999999 6666677777776666788888775543 11111 2222
Q ss_pred CceEecccccccccCccHHHHHhhh----hcccccCCCh-hhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCC
Q 002130 813 SEMFRANAAFREADGVSDEIFQVSL----VERECFSCPP-LEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 887 (961)
Q Consensus 813 ~~ilRV~a~sR~~~~V~~~I~~y~~----~~~~~F~~p~-~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQ 887 (961)
. +.+.+.+|.. .-+..+.... ...+.+.+|-+...... +...| .-.+|||||| |
T Consensus 71 ~--------------~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i---RGrt~---~~~~iIvDEa-Q 129 (205)
T PF02562_consen 71 D--------------LEEKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI---RGRTF---DNAFIIVDEA-Q 129 (205)
T ss_dssp ---------------------TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG---TT--B----SEEEEE-SG-G
T ss_pred C--------------HHHHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh---cCccc---cceEEEEecc-c
Confidence 1 1222222211 1112221112 23345566666554322 11112 2378999999 6
Q ss_pred CChHHHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHcC
Q 002130 888 ATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT 941 (961)
Q Consensus 888 AtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~~ 941 (961)
-+.|+.+.-+..-...++++|++||..|.--. .. ...||. -+.|||-+.
T Consensus 130 N~t~~~~k~ilTR~g~~skii~~GD~~Q~D~~-~~---~~nGl~-~~~~~~~~~ 178 (205)
T PF02562_consen 130 NLTPEELKMILTRIGEGSKIIITGDPSQIDLP-LD---YNNGLT-YAIERLKGE 178 (205)
T ss_dssp G--HHHHHHHHTTB-TT-EEEEEE------------------TH-HHHHHTTT-
T ss_pred CCCHHHHHHHHcccCCCcEEEEecCceeecCC-CC---CCchHH-HHHHHhcCC
Confidence 66676666665456688999999999998433 11 234542 344555543
No 30
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.11 E-value=1.4e-09 Score=104.74 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..+++.|++++..++... ...+|.||+||||| .+++.++.+.+......++|+++|++.+++.+..++.+.+.
T Consensus 7 ~~~~~~Q~~~~~~~~~~~--~~~~i~~~~GsGKT-----~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL--RDVILAAPTGSGKT-----LAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred CCCCHHHHHHHHHHHcCC--CcEEEECCCCCchh-----HHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 568999999999998752 25799999999999 88888888887765568999999999999999999887543
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhcc-ceEEEEeeccchhhhcc-CCCCCCccEEEEecCCCCC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQ-YKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~-~rVVvtT~ssag~L~~~-~~~~g~FdhVIIDEASQAt 889 (961)
.....+....... .....+. +.... ..|+++|.......... ......+++||||||....
T Consensus 80 ~~~~~~~~~~~~~--~~~~~~~---------------~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 142 (201)
T smart00487 80 SLGLKVVGLYGGD--SKREQLR---------------KLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLL 142 (201)
T ss_pred cCCeEEEEEeCCc--chHHHHH---------------HHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHh
Confidence 3221121111000 0000100 01122 27888886655443222 2345679999999996655
Q ss_pred h-H--HHHHHHhccc-cCCCeEEEEeCCCC
Q 002130 890 E-P--ETMIVLGNLA-NENTRVIVTGAPHN 915 (961)
Q Consensus 890 E-P--EaLIPLa~LA-~~~trVVLaGDpkQ 915 (961)
+ . +.+.-+.... .....+++.|.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 143 DGGFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred cCCcHHHHHHHHHhCCccceEEEEecCCch
Confidence 3 1 3333333222 24456677776543
No 31
>PF13245 AAA_19: Part of AAA domain
Probab=99.06 E-value=2.5e-10 Score=101.78 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=50.5
Q ss_pred HHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHHHHH
Q 002130 740 SAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 740 ~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--~p~~RILVcAPSNsAaD~LleRL 806 (961)
+||..++. +...++|+|||||||| +|++++|..++.. ..+.+||+++++|.|+|+|.+|+
T Consensus 1 ~av~~al~--~~~~~vv~g~pGtGKT-----~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 1 EAVRRALA--GSPLFVVQGPPGTGKT-----TTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CHHHHHHh--hCCeEEEECCCCCCHH-----HHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 36776776 2335677999999999 9999999998853 34789999999999999999999
No 32
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.01 E-value=2.5e-09 Score=97.10 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=76.8
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIF 833 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I~ 833 (961)
++|.||+|+||| .+++..+.++.......+|++++|++..++...+++........-+++... .. .....
T Consensus 3 ~~i~~~~G~GKT-----~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~ 72 (144)
T cd00046 3 VLLAAPTGSGKT-----LAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIG--GT---SIKQQ 72 (144)
T ss_pred EEEECCCCCchh-----HHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEec--Cc---chhHH
Confidence 589999999999 888888888877656789999999999999999988874321111111111 00 00000
Q ss_pred HhhhhcccccCCChhhhhccceEEEEeeccchhhhc-cCCCCCCccEEEEecCCCCChHH
Q 002130 834 QVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSATEPE 892 (961)
Q Consensus 834 ~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~-~~~~~g~FdhVIIDEASQAtEPE 892 (961)
.........|+++|......... .....+.+++||||||....+..
T Consensus 73 -------------~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~ 119 (144)
T cd00046 73 -------------EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG 119 (144)
T ss_pred -------------HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcc
Confidence 01123567888888876654332 22245679999999996655543
No 33
>PRK11054 helD DNA helicase IV; Provisional
Probab=98.98 E-value=7.5e-10 Score=133.10 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC--CCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~--p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..||++|++||... ...++|.|.|||||| +||++.+..++... ...+||+.|+||.||++|.+||.+.
T Consensus 195 ~~L~~~Q~~av~~~-----~~~~lV~agaGSGKT-----~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVVNG-----EDSLLVLAGAGSGKT-----SVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHhCC-----CCCeEEEEeCCCCHH-----HHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 46999999999743 235799999999999 99999999888653 3569999999999999999999886
Q ss_pred CC
Q 002130 810 IP 811 (961)
Q Consensus 810 l~ 811 (961)
++
T Consensus 265 lg 266 (684)
T PRK11054 265 LG 266 (684)
T ss_pred cC
Confidence 54
No 34
>PRK10536 hypothetical protein; Provisional
Probab=98.95 E-value=3.9e-09 Score=113.93 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=82.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..+|..|..++..+... ..++|.||+||||| +..+.+..+.+....-.+|+|+-|+=.+ +. .+.+++
T Consensus 58 ~p~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT-----~La~a~a~~~l~~~~~~kIiI~RP~v~~-ge----~LGfLP 124 (262)
T PRK10536 58 LARNEAQAHYLKAIESK---QLIFATGEAGCGKT-----WISAAKAAEALIHKDVDRIIVTRPVLQA-DE----DLGFLP 124 (262)
T ss_pred cCCCHHHHHHHHHHhcC---CeEEEECCCCCCHH-----HHHHHHHHHHHhcCCeeEEEEeCCCCCc-hh----hhCcCC
Confidence 56899999999987654 37899999999999 5555555544533334566666554333 22 112233
Q ss_pred CCceEecccccccccCccHHHHHhhhh--c--ccccCCChhhhh---ccceEEEEeeccchhhhccCCCCCCccEEEEec
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLV--E--RECFSCPPLEEL---RQYKVISSTFVSSFRLHNQGITAGHFSHIFLID 884 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~--~--~~~F~~p~~e~L---~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDE 884 (961)
+. +.+.+.+|..- + ...+..-..+.+ ....|.+.... .+....+ .-++|||||
T Consensus 125 G~--------------~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~---ymRGrtl---~~~~vIvDE 184 (262)
T PRK10536 125 GD--------------IAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFA---YMRGRTF---ENAVVILDE 184 (262)
T ss_pred CC--------------HHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHH---HhcCCcc---cCCEEEEec
Confidence 21 22222222110 0 001110111111 23445444332 1111111 347899999
Q ss_pred CCCCChHHHHHHHhccccCCCeEEEEeCCCCCC
Q 002130 885 ASSATEPETMIVLGNLANENTRVIVTGAPHNSP 917 (961)
Q Consensus 885 ASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLp 917 (961)
|.. +.++.+--+..-...++++|++||+.|.-
T Consensus 185 aqn-~~~~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 185 AQN-VTAAQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred hhc-CCHHHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 955 55554444433456889999999999974
No 35
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=98.89 E-value=7.8e-09 Score=122.96 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC--CCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~--p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
.||++|++||... .+|.+|.+.|||||| +||++.|..++... ...+||+.|.||.||.++.+|+.+.+
T Consensus 2 ~Ln~~Q~~av~~~-----~gp~lV~AGaGsGKT-----~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~ 71 (655)
T COG0210 2 KLNPEQREAVLHP-----DGPLLVLAGAGSGKT-----RVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLL 71 (655)
T ss_pred CCCHHHHHHHhcC-----CCCeEEEECCCCCch-----hhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHh
Confidence 6999999999976 458899999999999 99999999999863 34589999999999999999999855
Q ss_pred C
Q 002130 811 P 811 (961)
Q Consensus 811 ~ 811 (961)
.
T Consensus 72 ~ 72 (655)
T COG0210 72 G 72 (655)
T ss_pred C
Confidence 4
No 36
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.84 E-value=3.9e-09 Score=102.71 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHhc--cC--CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 733 KLDSDSNSAVHQILSF--EG--QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~--~~--~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.|.+.|.+||..++.. .. ..-++|.||.|+||| .+++.++.++.+ ++|+++|+..-++.+.+.+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT-----~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKT-----IIALALILELAR-----KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHH-----HHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcC-----hhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHH
Confidence 5789999999999964 11 346899999999999 888888888776 999999999999999998854
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc------------CCCCCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ------------GITAGH 876 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~------------~~~~g~ 876 (961)
.......+........ ...+ ........+.........+..++++|.......... ......
T Consensus 73 ~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPA---YDSK---EFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNK 146 (184)
T ss_dssp HSTTSEEEEE--GGGC---CE-S---EEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGS
T ss_pred hhhhhhhhcccccccc---cccc---cccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcccc
Confidence 3222222211110000 0000 000000000000111234567777777665443211 123357
Q ss_pred ccEEEEecCCCCChHHHH
Q 002130 877 FSHIFLIDASSATEPETM 894 (961)
Q Consensus 877 FdhVIIDEASQAtEPEaL 894 (961)
|++||||||.....-..+
T Consensus 147 ~~~vI~DEaH~~~~~~~~ 164 (184)
T PF04851_consen 147 FDLVIIDEAHHYPSDSSY 164 (184)
T ss_dssp ESEEEEETGGCTHHHHHH
T ss_pred CCEEEEehhhhcCCHHHH
Confidence 999999999887665533
No 37
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.78 E-value=7e-09 Score=109.51 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC--CCCeEEEEecchHHHHHHHHHHHhh
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~--p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
||++|+++|.. . ..+++|.|+|||||| +||++.|++++... +..+||+.|+||.||+.|.+||...
T Consensus 1 l~~eQ~~~i~~-~----~~~~lV~a~AGSGKT-----~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 1 LTDEQRRIIRS-T----EGPLLVNAGAGSGKT-----TTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp S-HHHHHHHHS------SSEEEEEE-TTSSHH-----HHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-C----CCCEEEEeCCCCCch-----HHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHh
Confidence 79999999997 3 237899999999999 99999999988764 4579999999999999999999874
No 38
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.77 E-value=4.9e-08 Score=94.67 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC--C
Q 002130 736 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA--S 813 (961)
Q Consensus 736 ~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~--~ 813 (961)
+.|.+|+..++++. -++|.||+|+||| ..+.-.+++.+.+....++++.+|+...++.+.+++.+.+.. .
T Consensus 2 ~~Q~~~~~~i~~~~---~~li~aptGsGKT-----~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 2 PLQQEAIEAIISGK---NVLISAPTGSGKT-----LAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp HHHHHHHHHHHTTS---EEEEECSTTSSHH-----HHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHcCC---CEEEECCCCCccH-----HHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccc
Confidence 67999999999544 3799999999999 676667777666544569999999999999999999875433 2
Q ss_pred ceEecccccccccCccHHHHHhhhhcccccCCChhhhh-ccceEEEEeeccchhhhccC-CCCCCccEEEEecCCCCCh
Q 002130 814 EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 814 ~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L-~~~rVVvtT~ssag~L~~~~-~~~g~FdhVIIDEASQAtE 890 (961)
+...+.. +....... .+.+ .+++|+++|......+...+ ....++++||||||.+...
T Consensus 74 ~~~~~~~------~~~~~~~~-------------~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 74 RVVLLHG------GQSISEDQ-------------REVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp SEEEEST------TSCHHHHH-------------HHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHH
T ss_pred ccccccc------cccccccc-------------cccccccccccccCcchhhccccccccccccceeeccCccccccc
Confidence 2332221 11111000 1112 46899999998776544331 2223599999999965443
No 39
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.68 E-value=1.5e-07 Score=94.91 Aligned_cols=134 Identities=14% Similarity=0.083 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh---CCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR---SPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~---~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
.+++.|++|+..++.++ -++|.+|.|+||| .+.+..+++.+.. ..+.+|+|++|+..-+..+.+.+.+.
T Consensus 21 ~~~~~Q~~~~~~~~~~~---~~li~~~TG~GKT-----~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~ 92 (203)
T cd00268 21 KPTPIQARAIPPLLSGR---DVIGQAQTGSGKT-----AAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKL 92 (203)
T ss_pred CCCHHHHHHHHHHhcCC---cEEEECCCCCcHH-----HHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 57899999999999864 3699999999999 5544444444433 25679999999999999988887653
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhh-ccceEEEEeeccchh-hhccCCCCCCccEEEEecCCC
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFR-LHNQGITAGHFSHIFLIDASS 887 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L-~~~rVVvtT~ssag~-L~~~~~~~g~FdhVIIDEASQ 887 (961)
..... +++... .+..... .....+ .+.+|+++|...... +....+....+++||||||..
T Consensus 93 ~~~~~-~~~~~~---~~~~~~~--------------~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 93 GKHTN-LKVVVI---YGGTSID--------------KQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR 154 (203)
T ss_pred hccCC-ceEEEE---ECCCCHH--------------HHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH
Confidence 22111 111110 0001100 001111 367899999765433 222223345789999999976
Q ss_pred CChHH
Q 002130 888 ATEPE 892 (961)
Q Consensus 888 AtEPE 892 (961)
+.+..
T Consensus 155 ~~~~~ 159 (203)
T cd00268 155 MLDMG 159 (203)
T ss_pred hhccC
Confidence 55443
No 40
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=98.67 E-value=1.8e-08 Score=103.51 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=33.7
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~ 923 (961)
..++++||||| |+..+..+.-|..+ .....++|+||+.|.+..-+.+
T Consensus 61 ~~~~~liiDE~-~~~~~g~l~~l~~~-~~~~~~~l~GDp~Q~~~~~~~~ 107 (234)
T PF01443_consen 61 KSYDTLIIDEA-QLLPPGYLLLLLSL-SPAKNVILFGDPLQIPYISRND 107 (234)
T ss_pred CcCCEEEEecc-ccCChHHHHHHHhh-ccCcceEEEECchhccCCcccc
Confidence 36999999999 55555444445422 3557999999999998765544
No 41
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.64 E-value=5.8e-08 Score=108.55 Aligned_cols=187 Identities=16% Similarity=0.135 Sum_probs=108.3
Q ss_pred CCCCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 729 YSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
|--...|.+|+-|+...|... ...+.+.|..|||||+ ..+|.++.|.+.+....+|+|+-|+-.-- +.+ .
T Consensus 224 wGi~prn~eQ~~ALdlLld~d-I~lV~L~G~AGtGKTl----LALaAgleqv~e~~~y~KiiVtRp~vpvG----~dI-G 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDD-IDLVSLGGKAGTGKTL----LALAAGLEQVLERKRYRKIIVTRPTVPVG----EDI-G 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCC-CCeEEeeccCCccHhH----HHHHHHHHHHHHHhhhceEEEecCCcCcc----ccc-C
Confidence 443567999999999877654 4567899999999993 56788899999887778888887643211 111 1
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCC-----Ch-hhhhccceEEEEeeccchhhhccCCCCCCccEEEE
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSC-----PP-LEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFL 882 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~-----p~-~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVII 882 (961)
++++.+=-. +-+.+......-+..|.. .. .+.|.+.+|=+-.+.-. +. +.-+=.+|||
T Consensus 294 fLPG~eEeK----------m~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~I---RG---RSl~~~FiII 357 (436)
T COG1875 294 FLPGTEEEK----------MGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYI---RG---RSLPDSFIII 357 (436)
T ss_pred cCCCchhhh----------ccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeee---cc---cccccceEEE
Confidence 222221111 111221111000011110 01 12233333333222111 01 1113356999
Q ss_pred ecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHcCCccc
Q 002130 883 IDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLTEAYR 945 (961)
Q Consensus 883 DEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~~~~Y~ 945 (961)
||| |-++|..+--|..-+++++||||.||+.|.---..... ..|| ..+-||+-+.+.|.
T Consensus 358 DEa-QNLTpheikTiltR~G~GsKIVl~gd~aQiD~~yl~~~--snGL-tyvverfk~~~l~~ 416 (436)
T COG1875 358 DEA-QNLTPHELKTILTRAGEGSKIVLTGDPAQIDTPYLDET--SNGL-TYVVEKFKGHPLSA 416 (436)
T ss_pred ehh-hccCHHHHHHHHHhccCCCEEEEcCCHHHcCCccccCC--CccH-HHHHHHhcCCCcee
Confidence 999 88889888877767889999999999999854433221 1233 45678887776654
No 42
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.50 E-value=8.7e-07 Score=107.02 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=88.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|++.|++|+..++.......++|+|+.|+||| .+.+.+|.+.+.. +.++||.+|+..-++.+.+++.+.++
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT-----~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~fg 215 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKT-----EVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARFG 215 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHH-----HHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 4699999999999987422235899999999999 7777778777765 78999999999999999999987653
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQA 888 (961)
..+..+.+. +...- ++..|.. -.-.+.+|||+|..... .+-.++.+|||||+...
T Consensus 216 -~~v~~~~s~------~s~~~-r~~~~~~--------~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~ 270 (679)
T PRK05580 216 -APVAVLHSG------LSDGE-RLDEWRK--------AKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDS 270 (679)
T ss_pred -CCEEEEECC------CCHHH-HHHHHHH--------HHcCCCCEEEeccHHhc------ccccCCCEEEEECCCcc
Confidence 344444321 11110 0101100 01135689999975432 23357899999998643
No 43
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.46 E-value=1.5e-06 Score=101.28 Aligned_cols=124 Identities=12% Similarity=0.053 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|.+.|++||..++.... .+|+.|.|+||| .+.+.++..+++. ...++||++||...+++..+++.+...
T Consensus 113 ~~~r~~Q~~av~~~l~~~~---~il~apTGsGKT-----~i~~~l~~~~~~~-~~~~vLilvpt~eL~~Q~~~~l~~~~~ 183 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNR---RLLNLPTSAGKS-----LIQYLLSRYYLEN-YEGKVLIIVPTTSLVTQMIDDFVDYRL 183 (501)
T ss_pred CCCCHHHHHHHHHHHhcCc---eEEEeCCCCCHH-----HHHHHHHHHHHhc-CCCeEEEEECcHHHHHHHHHHHHHhcc
Confidence 4688999999999997642 489999999999 6555544444443 345999999999999999999986321
Q ss_pred --CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 812 --ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 812 --~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
...+.-+.. +... -....|+|+|..+....... .-..|++||||||.++.
T Consensus 184 ~~~~~~~~i~~--------------------g~~~------~~~~~I~VaT~qsl~~~~~~--~~~~~~~iIvDEaH~~~ 235 (501)
T PHA02558 184 FPREAMHKIYS--------------------GTAK------DTDAPIVVSTWQSAVKQPKE--WFDQFGMVIVDECHLFT 235 (501)
T ss_pred ccccceeEEec--------------------Cccc------CCCCCEEEeeHHHHhhchhh--hccccCEEEEEchhccc
Confidence 111111110 0000 03468999987655332211 12479999999999887
Q ss_pred hHH
Q 002130 890 EPE 892 (961)
Q Consensus 890 EPE 892 (961)
...
T Consensus 236 ~~~ 238 (501)
T PHA02558 236 GKS 238 (501)
T ss_pred chh
Confidence 654
No 44
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.45 E-value=1.3e-06 Score=99.04 Aligned_cols=130 Identities=14% Similarity=0.079 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-----CCCCeEEEEecchHHHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-----SPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-----~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
.+.+.|.+|+..++.+.+ +++.+|.||||| .+.+-.+++.+.. ....++||++||...|..+.+.+.
T Consensus 23 ~p~~iQ~~ai~~~~~g~d---~l~~apTGsGKT-----~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~ 94 (434)
T PRK11192 23 RPTAIQAEAIPPALDGRD---VLGSAPTGTGKT-----AAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQAR 94 (434)
T ss_pred CCCHHHHHHHHHHhCCCC---EEEECCCCChHH-----HHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHH
Confidence 568899999999997753 799999999999 4444444444322 234699999999999999888776
Q ss_pred hhCC--CCceEecccccccccCccHHHHHhhhhcccccCCChhhh-hccceEEEEeeccchh-hhccCCCCCCccEEEEe
Q 002130 808 KDIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEE-LRQYKVISSTFVSSFR-LHNQGITAGHFSHIFLI 883 (961)
Q Consensus 808 ~~l~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~-L~~~rVVvtT~ssag~-L~~~~~~~g~FdhVIID 883 (961)
.... +..+.-+.. .+...- ..+. ....+|||+|...... +....+....+++||||
T Consensus 95 ~l~~~~~~~v~~~~g------g~~~~~--------------~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViD 154 (434)
T PRK11192 95 ELAKHTHLDIATITG------GVAYMN--------------HAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILD 154 (434)
T ss_pred HHHccCCcEEEEEEC------CCCHHH--------------HHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEE
Confidence 5321 222222211 111100 0111 1356899998754432 22333445678999999
Q ss_pred cCCCCCh
Q 002130 884 DASSATE 890 (961)
Q Consensus 884 EASQAtE 890 (961)
||..+.+
T Consensus 155 Eah~~l~ 161 (434)
T PRK11192 155 EADRMLD 161 (434)
T ss_pred CHHHHhC
Confidence 9976654
No 45
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.39 E-value=1.1e-06 Score=106.01 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..+-..|..||.++... .+..-.||..-+||||| +|.+.+|-+|++...-+|||..|-.|+-+|+......++
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKT-----rTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKT-----RTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcc-----eeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHh
Confidence 45678899999998864 23333799999999999 999999999999988899999999999999999988776
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh-hh-----ccCCCCCCccEEEEe
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LH-----NQGITAGHFSHIFLI 883 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~-L~-----~~~~~~g~FdhVIID 883 (961)
++....+-+... ......++|.++|+-+... .. ...+..||||+||||
T Consensus 239 ~P~~~~~n~i~~--------------------------~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvID 292 (875)
T COG4096 239 LPFGTKMNKIED--------------------------KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVID 292 (875)
T ss_pred CCCccceeeeec--------------------------ccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEec
Confidence 654433221100 0111257899999876632 22 234678999999999
Q ss_pred cCCC
Q 002130 884 DASS 887 (961)
Q Consensus 884 EASQ 887 (961)
||..
T Consensus 293 EaHR 296 (875)
T COG4096 293 EAHR 296 (875)
T ss_pred hhhh
Confidence 9975
No 46
>PTZ00424 helicase 45; Provisional
Probab=98.37 E-value=2.8e-06 Score=94.72 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..+++.|.+|+..++.+.+ .+|++|.|+||| .+..-++++.+.. ..+.++|+.+|+..-|..+.+.+....
T Consensus 49 ~~~~~~Q~~ai~~i~~~~d---~ii~apTGsGKT-----~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 120 (401)
T PTZ00424 49 EKPSAIQQRGIKPILDGYD---TIGQAQSGTGKT-----ATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALG 120 (401)
T ss_pred CCCCHHHHHHHHHHhCCCC---EEEECCCCChHH-----HHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHh
Confidence 3689999999999998763 589999999999 5555555555542 246789999999999998877766532
Q ss_pred CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhh-hccCCCCCCccEEEEecCCCCC
Q 002130 811 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 811 ~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L-~~~~~~~g~FdhVIIDEASQAt 889 (961)
.... ++....... ..+..++. ......+|||+|......+ ....+....+++||||||..+.
T Consensus 121 ~~~~-~~~~~~~g~-~~~~~~~~---------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 121 DYLK-VRCHACVGG-TVVRDDIN---------------KLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEML 183 (401)
T ss_pred hhcC-ceEEEEECC-cCHHHHHH---------------HHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHH
Confidence 1111 111100000 00001100 0112358999997654332 2223344679999999997654
Q ss_pred h
Q 002130 890 E 890 (961)
Q Consensus 890 E 890 (961)
+
T Consensus 184 ~ 184 (401)
T PTZ00424 184 S 184 (401)
T ss_pred h
Confidence 4
No 47
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.37 E-value=3e-06 Score=84.98 Aligned_cols=123 Identities=16% Similarity=0.155 Sum_probs=76.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEI 832 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I 832 (961)
..+|.=.||+|||. .+|.++|.+.+++ +.|+||.+||...++++.+-|.+ .-+|+....+..
T Consensus 6 ~~~~d~hpGaGKTr----~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~-----~~~~~~t~~~~~------- 67 (148)
T PF07652_consen 6 LTVLDLHPGAGKTR----RVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKG-----LPVRFHTNARMR------- 67 (148)
T ss_dssp EEEEE--TTSSTTT----THHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTT-----SSEEEESTTSS--------
T ss_pred eeEEecCCCCCCcc----cccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhc-----CCcccCceeeec-------
Confidence 45788899999992 3789999998886 89999999999999999998853 236665432110
Q ss_pred HHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHhcccc----CCCeEE
Q 002130 833 FQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLAN----ENTRVI 908 (961)
Q Consensus 833 ~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~----~~trVV 908 (961)
.. -...-|-+.|-.+.+++.........||+||+||| +.++|+++.....+.. ...++|
T Consensus 68 --------~~--------~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEc-H~~Dp~sIA~rg~l~~~~~~g~~~~i 130 (148)
T PF07652_consen 68 --------TH--------FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDEC-HFTDPTSIAARGYLRELAESGEAKVI 130 (148)
T ss_dssp -------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTT-T--SHHHHHHHHHHHHHHHTTS-EEE
T ss_pred --------cc--------cCCCcccccccHHHHHHhcCcccccCccEEEEecc-ccCCHHHHhhheeHHHhhhccCeeEE
Confidence 00 12233444444455554444555678999999999 7899998765553321 224677
Q ss_pred EE
Q 002130 909 VT 910 (961)
Q Consensus 909 La 910 (961)
++
T Consensus 131 ~m 132 (148)
T PF07652_consen 131 FM 132 (148)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 48
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.34 E-value=5.1e-06 Score=95.24 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHHhh-
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMKD- 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-p~~RILVcAPSNsAaD~LleRL~~~- 809 (961)
..+++-|++|+..++.+.+ ++|++|.||||| .+..-.+++.+... ...++||.+||..-|+++.+.+...
T Consensus 25 ~~~t~iQ~~ai~~~l~g~d---vi~~a~TGsGKT-----~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 96 (460)
T PRK11776 25 TEMTPIQAQSLPAILAGKD---VIAQAKTGSGKT-----AAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLA 96 (460)
T ss_pred CCCCHHHHHHHHHHhcCCC---EEEECCCCCcHH-----HHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 3589999999999998753 799999999999 55444455544432 2458999999999999998877652
Q ss_pred --CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhh-ccceEEEEeeccchhhh-ccCCCCCCccEEEEecC
Q 002130 810 --IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDA 885 (961)
Q Consensus 810 --l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L-~~~rVVvtT~ssag~L~-~~~~~~g~FdhVIIDEA 885 (961)
+.+.++.-++. ..+.... .+.+ ...+|||+|..-...+. ...+.-..+++||||||
T Consensus 97 ~~~~~~~v~~~~G------g~~~~~~--------------~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 97 RFIPNIKVLTLCG------GVPMGPQ--------------IDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred hhCCCcEEEEEEC------CCChHHH--------------HHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 22222222211 1111100 0111 35689999975443322 22233456899999999
Q ss_pred CCCCh
Q 002130 886 SSATE 890 (961)
Q Consensus 886 SQAtE 890 (961)
-.+.+
T Consensus 157 d~~l~ 161 (460)
T PRK11776 157 DRMLD 161 (460)
T ss_pred HHHhC
Confidence 76654
No 49
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.33 E-value=1.3e-06 Score=97.36 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=40.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.++|.|.|||||| .++..++.++.....+.++++.+..+.-++.+.+.|..
T Consensus 3 v~~I~G~aGTGKT-----vla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKT-----VLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHH-----HHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 4699999999999 77777777763334577888888888888888888865
No 50
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.33 E-value=2.2e-06 Score=98.66 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=86.9
Q ss_pred CCCCCHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 731 NYKLDSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
...|++.|++|+.+++.... ....+|.-|+|+||| .+.+++|..+. .++||++|+...+++-.+++...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT-----~va~~~~~~~~-----~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKT-----VVAAEAIAELK-----RSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHH-----HHHHHHHHHhc-----CCEEEEECcHHHHHHHHHHHHHh
Confidence 45799999999999998411 224589999999999 66666666532 23999999999999999888764
Q ss_pred CCCC-ceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhh-hccCCCCCCccEEEEecCCC
Q 002130 810 IPAS-EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HNQGITAGHFSHIFLIDASS 887 (961)
Q Consensus 810 l~~~-~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L-~~~~~~~g~FdhVIIDEASQ 887 (961)
+... .+--++. +. ++ +....|+++|..+..+. ....+..++|+.||||||.+
T Consensus 104 ~~~~~~~g~~~~--------------------~~-----~~-~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh 157 (442)
T COG1061 104 LLLNDEIGIYGG--------------------GE-----KE-LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHH 157 (442)
T ss_pred cCCccccceecC--------------------ce-----ec-cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcccc
Confidence 3221 1111111 11 11 11157899999888764 22344556899999999999
Q ss_pred CChHH
Q 002130 888 ATEPE 892 (961)
Q Consensus 888 AtEPE 892 (961)
+--+.
T Consensus 158 ~~a~~ 162 (442)
T COG1061 158 LPAPS 162 (442)
T ss_pred CCcHH
Confidence 87654
No 51
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.30 E-value=1.9e-05 Score=96.02 Aligned_cols=148 Identities=11% Similarity=0.049 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh--
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD-- 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~-- 809 (961)
..|=+.|++||..++......--+|.-|+|+||| .+.+.++..+ +.++||.+|+...+++..+.+.+.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKT-----lvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKS-----LVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChH-----HHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 4678999999999885422112489999999999 5555544332 468999999999999999998863
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh---------ccCCCCCCccEE
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH---------NQGITAGHFSHI 880 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~---------~~~~~~g~FdhV 880 (961)
+....+.++....+ .. ....+.|+|+|..+..... ...+....|++|
T Consensus 324 l~~~~I~~~tg~~k-----------------~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLI 379 (732)
T TIGR00603 324 IDDSQICRFTSDAK-----------------ER-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLI 379 (732)
T ss_pred CCCceEEEEecCcc-----------------cc-------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEE
Confidence 22333333322110 00 0134689999997764311 112344579999
Q ss_pred EEecCCCCChHHHHHHHhccccCCCeEEEEeCCC
Q 002130 881 FLIDASSATEPETMIVLGNLANENTRVIVTGAPH 914 (961)
Q Consensus 881 IIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpk 914 (961)
|+|||..+..+. +.-+........++-|.|=|.
T Consensus 380 I~DEvH~lpA~~-fr~il~~l~a~~RLGLTATP~ 412 (732)
T TIGR00603 380 LLDEVHVVPAAM-FRRVLTIVQAHCKLGLTATLV 412 (732)
T ss_pred EEEccccccHHH-HHHHHHhcCcCcEEEEeecCc
Confidence 999998775443 222221223446777777654
No 52
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.28 E-value=2.9e-06 Score=107.39 Aligned_cols=134 Identities=12% Similarity=0.067 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..|-+.|.+||.++... .+..-.||+.+.||||| .|++.++.++++.....|||++++.+.-+++..+.+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT-----~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKT-----RTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHH-----HHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc
Confidence 45789999999988743 12223689999999999 898889988888766789999999999999999988753
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhh-hc-----cCCCCCCccEEEEe
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HN-----QGITAGHFSHIFLI 883 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L-~~-----~~~~~g~FdhVIID 883 (961)
.... ...+.. +..+. .+. +.. .-...+|+|+|.-+.... .. ..+..++||+||||
T Consensus 487 ~~~~-~~~~~~----i~~i~-~L~-------~~~------~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiD 547 (1123)
T PRK11448 487 KIEG-DQTFAS----IYDIK-GLE-------DKF------PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVD 547 (1123)
T ss_pred cccc-ccchhh----hhchh-hhh-------hhc------ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEE
Confidence 1110 000000 00000 000 000 013578999998765332 11 11356799999999
Q ss_pred cCCCCC
Q 002130 884 DASSAT 889 (961)
Q Consensus 884 EASQAt 889 (961)
||....
T Consensus 548 EaHRs~ 553 (1123)
T PRK11448 548 EAHRGY 553 (1123)
T ss_pred CCCCCC
Confidence 998863
No 53
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.26 E-value=5.5e-06 Score=95.31 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC-------CCCeEEEEecchHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-------PKSRILICAPWNRTCDKLME 804 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-------p~~RILVcAPSNsAaD~Lle 804 (961)
..+++-|++|+..++...+ +||++|.||||| .+..-.+++.+... ...++||.+||...|.++.+
T Consensus 22 ~~pt~iQ~~ai~~il~g~d---vlv~apTGsGKT-----la~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~ 93 (456)
T PRK10590 22 REPTPIQQQAIPAVLEGRD---LMASAQTGTGKT-----AGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGE 93 (456)
T ss_pred CCCCHHHHHHHHHHhCCCC---EEEECCCCCcHH-----HHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHH
Confidence 3678999999999998753 699999999999 44333344443221 12489999999999999998
Q ss_pred HHHhhCCC--CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-ccCCCCCCccEEE
Q 002130 805 CLMKDIPA--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIF 881 (961)
Q Consensus 805 RL~~~l~~--~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~~~~~g~FdhVI 881 (961)
.+...... ...+.+... ..+.+... ..-...+|||+|......+. ...+.-..+++||
T Consensus 94 ~~~~~~~~~~~~~~~~~gg----~~~~~~~~---------------~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lV 154 (456)
T PRK10590 94 NVRDYSKYLNIRSLVVFGG----VSINPQMM---------------KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILV 154 (456)
T ss_pred HHHHHhccCCCEEEEEECC----cCHHHHHH---------------HHcCCCcEEEEChHHHHHHHHcCCcccccceEEE
Confidence 88763221 122222110 00111111 11135689999976543322 2223345789999
Q ss_pred EecCCCCChH
Q 002130 882 LIDASSATEP 891 (961)
Q Consensus 882 IDEASQAtEP 891 (961)
||||..+.+.
T Consensus 155 iDEah~ll~~ 164 (456)
T PRK10590 155 LDEADRMLDM 164 (456)
T ss_pred eecHHHHhcc
Confidence 9999876654
No 54
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.26 E-value=6.4e-06 Score=101.50 Aligned_cols=143 Identities=12% Similarity=0.094 Sum_probs=85.5
Q ss_pred HHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEe
Q 002130 738 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFR 817 (961)
Q Consensus 738 Qr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilR 817 (961)
.+..+...|... .-++|+|++|+||| +.+...|++... .+.+|+|+.|+..||..+++|+.+.+...--..
T Consensus 6 ~~~~i~~~l~~~--~~vIi~a~TGSGKT-----T~vpl~lL~~~~--~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 6 VLPALRDALAAH--PQVVLEAPPGAGKS-----TAVPLALLDAPG--IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHHHHcC--CcEEEECCCCCCHH-----HHHHHHHHHhhc--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 455566666442 25799999999999 666666655432 356999999999999999999986443211122
Q ss_pred cccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCC-CChHHHHHH
Q 002130 818 ANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS-ATEPETMIV 896 (961)
Q Consensus 818 V~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQ-AtEPEaLIP 896 (961)
++..-|.. .. .-.+.+|+++|-...-+....+..-..+++||||||.. ..+.+.++.
T Consensus 77 VGy~vr~~---------------~~-------~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ 134 (819)
T TIGR01970 77 VGYRVRGE---------------NK-------VSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLA 134 (819)
T ss_pred EEEEEccc---------------cc-------cCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHH
Confidence 33221110 00 00235788887644333222233345799999999984 555554333
Q ss_pred Hh----ccccCCCeEEEEe
Q 002130 897 LG----NLANENTRVIVTG 911 (961)
Q Consensus 897 La----~LA~~~trVVLaG 911 (961)
+. .......++|+..
T Consensus 135 ll~~i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 135 LALDVQSSLREDLKILAMS 153 (819)
T ss_pred HHHHHHHhcCCCceEEEEe
Confidence 31 1112455777754
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.26 E-value=4.6e-06 Score=99.96 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHhcc-C--CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 733 KLDSDSNSAVHQILSFE-G--QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~-~--~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
.|++.|++|+..|+... . +.-.||+||.|+||| .+...++++.+.. +.++|+.+||..-|.++.+.+.+.
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT-----~va~l~il~~~~~--g~qvlilaPT~~LA~Q~~~~~~~l 307 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKT-----LVAALAMLAAIEA--GYQVALMAPTEILAEQHYNSLRNL 307 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHH-----HHHHHHHHHHHHc--CCcEEEECCHHHHHHHHHHHHHHH
Confidence 58999999999999752 1 123599999999999 6665666666654 789999999999999999988875
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEecCCC
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 887 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQ 887 (961)
+.... +++.... ..+...-+.. ..+.+ .+.+|||+|.... ...+.-..+.+||||||..
T Consensus 308 ~~~~g-i~v~llt---g~~~~~~r~~-----------~~~~i~~g~~~IiVgT~~ll----~~~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 308 LAPLG-IEVALLT---GSLKGKRRKE-----------LLETIASGQIHLVVGTHALI----QEKVEFKRLALVIIDEQHR 368 (630)
T ss_pred hcccC-cEEEEEe---cCCCHHHHHH-----------HHHHHhCCCCCEEEecHHHH----hccccccccceEEEechhh
Confidence 43211 1221110 1111110000 01111 3568999986432 2223345789999999964
No 56
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.25 E-value=6.2e-06 Score=99.04 Aligned_cols=132 Identities=10% Similarity=0.021 Sum_probs=83.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhh-
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKD- 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~- 809 (961)
..+++.|.+|+..++... -+|+++|.||||| .+.+-.+++.+.. ....++||.+||..-|.++.+.+...
T Consensus 27 ~~ptpiQ~~ai~~ll~g~---dvl~~ApTGsGKT-----~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~ 98 (629)
T PRK11634 27 EKPSPIQAECIPHLLNGR---DVLGMAQTGSGKT-----AAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFS 98 (629)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCCcHH-----HHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHH
Confidence 357899999999999765 3799999999999 4444344443332 34568999999999999998776652
Q ss_pred --CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhh-hccCCCCCCccEEEEecCC
Q 002130 810 --IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HNQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 810 --l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L-~~~~~~~g~FdhVIIDEAS 886 (961)
+.+..++-++... .+...+. ..-....|||+|......+ ....+.-..+.+||||||.
T Consensus 99 ~~~~~i~v~~~~gG~----~~~~q~~---------------~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 99 KHMRGVNVVALYGGQ----RYDVQLR---------------ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred hhcCCceEEEEECCc----CHHHHHH---------------HhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 2333333332211 0111110 1113568999998655332 2222334578899999997
Q ss_pred CCCh
Q 002130 887 SATE 890 (961)
Q Consensus 887 QAtE 890 (961)
.++.
T Consensus 160 ~ml~ 163 (629)
T PRK11634 160 EMLR 163 (629)
T ss_pred HHhh
Confidence 6554
No 57
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.24 E-value=6.7e-06 Score=101.28 Aligned_cols=144 Identities=11% Similarity=0.080 Sum_probs=83.7
Q ss_pred HHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEe
Q 002130 738 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFR 817 (961)
Q Consensus 738 Qr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilR 817 (961)
.+..+...|... .-++|+||+|+||| +.+.-.+++-. ..+.+|+|+.|+..||..+++++.+.+....-.+
T Consensus 9 ~~~~i~~~l~~~--~~vvv~A~TGSGKT-----t~~pl~lL~~~--~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 9 VLPELLTALKTA--PQVLLKAPTGAGKS-----TWLPLQLLQHG--GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHHHHHHHhC--CCEEEEcCCCCCHH-----HHHHHHHHHcC--CcCCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 445555555442 24799999999999 66554444321 2245999999999999999999986543322223
Q ss_pred cccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCC-CChHHHHHH
Q 002130 818 ANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS-ATEPETMIV 896 (961)
Q Consensus 818 V~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQ-AtEPEaLIP 896 (961)
++...|....+ -.+.+|+++|-...-+....+..-..+++||||||.. ..+-+.++.
T Consensus 80 VGy~vr~~~~~----------------------~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ 137 (812)
T PRK11664 80 VGYRMRAESKV----------------------GPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALA 137 (812)
T ss_pred EEEEecCcccc----------------------CCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHH
Confidence 33221110000 0234688888654433222333446799999999975 344443333
Q ss_pred Hh----ccccCCCeEEEEeC
Q 002130 897 LG----NLANENTRVIVTGA 912 (961)
Q Consensus 897 La----~LA~~~trVVLaGD 912 (961)
+. .......|+|+..-
T Consensus 138 ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 138 LLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred HHHHHHHhCCccceEEEEec
Confidence 22 01123456777653
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.22 E-value=7.7e-06 Score=98.97 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHhcc---CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFE---GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~---~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|++.|++|+..|+... .+.-.||+||.|+||| .+.+.++++.+.. +.++|+.|||..-|.++.+++.+
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT-----~va~~~il~~~~~--g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKT-----VVAALAALAAIEA--GYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHH-----HHHHHHHHHHHHc--CCeEEEEeccHHHHHHHHHHHHH
Confidence 468999999999998752 1223699999999999 6666666666654 78999999999999999999887
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEecCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEAS 886 (961)
.+.... +++.... ..+...-+.. ..+.+ .+..|||+|.... ...+.-.++.+||||||.
T Consensus 333 l~~~~~-i~v~ll~---G~~~~~~r~~-----------~~~~l~~g~~~IvVgT~~ll----~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 333 LLEPLG-IRVALLT---GSLKGKERRE-----------ILEAIASGEADIVIGTHALI----QDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred HHhhcC-cEEEEEc---CCCCHHHHHH-----------HHHHHhCCCCCEEEchHHHh----cccchhcccceEEEechh
Confidence 543211 2221110 1111110000 00111 3578999986422 222233578999999996
Q ss_pred C
Q 002130 887 S 887 (961)
Q Consensus 887 Q 887 (961)
.
T Consensus 394 r 394 (681)
T PRK10917 394 R 394 (681)
T ss_pred h
Confidence 5
No 59
>PRK01172 ski2-like helicase; Provisional
Probab=98.22 E-value=1.1e-05 Score=97.10 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|++.|++|+..++.++ -++|.+|.|+||| ....-+|++.+.. +.++++++|+.+-|++..+++.+..
T Consensus 21 ~~l~~~Q~~ai~~l~~~~---nvlv~apTGSGKT-----l~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~l~- 89 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGE---NVIVSVPTAAGKT-----LIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSRLR- 89 (674)
T ss_pred CCCCHHHHHHHHHHhcCC---cEEEECCCCchHH-----HHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHHHh-
Confidence 358999999999986654 3799999999999 4444445555543 6789999999999999888886421
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccC-CCCCCccEEEEecCCCCCh
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~-~~~g~FdhVIIDEASQAtE 890 (961)
... ++++....+. .. ....+.+.+||++|......+.... ..-..+++||||||....+
T Consensus 90 ~~g-~~v~~~~G~~------------------~~-~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d 149 (674)
T PRK01172 90 SLG-MRVKISIGDY------------------DD-PPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGD 149 (674)
T ss_pred hcC-CeEEEEeCCC------------------CC-ChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccC
Confidence 100 1111110000 00 0122456789999986544332211 1124689999999977653
No 60
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.21 E-value=1.5e-05 Score=99.46 Aligned_cols=130 Identities=12% Similarity=0.116 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHHHHhcc---CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFE---GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~---~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..+++.|++|+..|+... .+.-.||+||.|+||| .+.+.++++.+.. +.++||++||..-|.+..+.+.+
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT-----~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~f~~ 522 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKT-----EVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFETFKE 522 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHH-----HHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHHHHH
Confidence 458999999999999751 1224699999999999 6666666666654 68999999999999999999887
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEecCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEAS 886 (961)
.+.... +++....+.... .+... ..+.+ .+.+|||+|-. +....+.-.++.+||||||.
T Consensus 523 ~~~~~~-i~v~~Lsg~~~~--~e~~~------------~~~~l~~g~~dIVIGTp~----ll~~~v~f~~L~llVIDEah 583 (926)
T TIGR00580 523 RFANFP-VTIELLSRFRSA--KEQNE------------ILKELASGKIDILIGTHK----LLQKDVKFKDLGLLIIDEEQ 583 (926)
T ss_pred HhccCC-cEEEEEeccccH--HHHHH------------HHHHHHcCCceEEEchHH----HhhCCCCcccCCEEEeeccc
Confidence 544321 232221111100 00000 00111 24689999973 22333444578999999985
Q ss_pred C
Q 002130 887 S 887 (961)
Q Consensus 887 Q 887 (961)
.
T Consensus 584 r 584 (926)
T TIGR00580 584 R 584 (926)
T ss_pred c
Confidence 4
No 61
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.21 E-value=2.8e-06 Score=93.75 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=35.7
Q ss_pred CCCCccEEEEecCCCCChHHHHHHHhcccc---CCCeEEEEe-CCCCCCccccCh
Q 002130 873 TAGHFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 873 ~~g~FdhVIIDEASQAtEPEaLIPLa~LA~---~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+-..|.+||+||| +.+--+++-+|..... +.+++||+- +.--|+..|.|.
T Consensus 126 ~~~~fKiiIlDEc-dsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 126 PCPPFKIIILDEC-DSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred CCCcceEEEEech-hhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 4457999999999 6777888888875432 567888864 556666666554
No 62
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.19 E-value=4.3e-06 Score=101.37 Aligned_cols=124 Identities=20% Similarity=0.275 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..||.+|+.|+..|+.. .+..++|++|.+|.||| -+..++|.+.+++ |+.+||..|.-+-.+.+++|+..++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKT-----EvYl~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKT-----EVYLEAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHH-----HHHHHHHHHHHHc--CCEEEEEeccccchHHHHHHHHHHh
Confidence 47999999999999876 34568999999999999 9999999999987 8999999999999999999999865
Q ss_pred CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh-hhccCCCCCCccEEEEecC
Q 002130 811 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHNQGITAGHFSHIFLIDA 885 (961)
Q Consensus 811 ~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~-L~~~~~~~g~FdhVIIDEA 885 (961)
+ .++.=+++. +.+. .+|..|.. ..-++++||++|.++... +.+++ .|||||=
T Consensus 270 g-~~v~vlHS~------Ls~~-er~~~W~~--------~~~G~~~vVIGtRSAlF~Pf~~LG-------LIIvDEE 322 (730)
T COG1198 270 G-AKVAVLHSG------LSPG-ERYRVWRR--------ARRGEARVVIGTRSALFLPFKNLG-------LIIVDEE 322 (730)
T ss_pred C-CChhhhccc------CChH-HHHHHHHH--------HhcCCceEEEEechhhcCchhhcc-------EEEEecc
Confidence 4 222222211 1111 12222211 112688999999998764 33443 5888874
No 63
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.18 E-value=7.3e-06 Score=97.37 Aligned_cols=134 Identities=15% Similarity=-0.007 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH-HhC-------CCCeEEEEecchHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RRS-------PKSRILICAPWNRTCDKLM 803 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl-k~~-------p~~RILVcAPSNsAaD~Ll 803 (961)
..+++-|.+|+-.+|.+.+ +++++|.||||| .+.+-.+++.+ ... ...++||++||...|..+.
T Consensus 30 ~~ptpiQ~~~ip~~l~G~D---vi~~ApTGSGKT-----lafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~ 101 (572)
T PRK04537 30 TRCTPIQALTLPVALPGGD---VAGQAQTGTGKT-----LAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIH 101 (572)
T ss_pred CCCCHHHHHHHHHHhCCCC---EEEEcCCCCcHH-----HHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHH
Confidence 3678999999999998763 699999999999 44444444333 211 1369999999999999998
Q ss_pred HHHHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhh-ccceEEEEeeccchhhh-cc-CCCCCCccEE
Q 002130 804 ECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLH-NQ-GITAGHFSHI 880 (961)
Q Consensus 804 eRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L-~~~rVVvtT~ssag~L~-~~-~~~~g~FdhV 880 (961)
+.+........ +++... ...+..+.. .+.+ ...+|||+|......+. .. .+....+++|
T Consensus 102 ~~~~~l~~~~~-i~v~~l---~Gg~~~~~q--------------~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~l 163 (572)
T PRK04537 102 KDAVKFGADLG-LRFALV---YGGVDYDKQ--------------RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (572)
T ss_pred HHHHHHhccCC-ceEEEE---ECCCCHHHH--------------HHHHhCCCCEEEECHHHHHHHHHhccccchhheeee
Confidence 88765322111 122111 011111110 1111 24679999975443222 11 1233457889
Q ss_pred EEecCCCCChH
Q 002130 881 FLIDASSATEP 891 (961)
Q Consensus 881 IIDEASQAtEP 891 (961)
|||||..+.+.
T Consensus 164 ViDEAh~lld~ 174 (572)
T PRK04537 164 VLDEADRMFDL 174 (572)
T ss_pred EecCHHHHhhc
Confidence 99999876553
No 64
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.17 E-value=7.4e-06 Score=93.00 Aligned_cols=132 Identities=13% Similarity=0.039 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH-Hh-------CCCCeEEEEecchHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RR-------SPKSRILICAPWNRTCDKLM 803 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl-k~-------~p~~RILVcAPSNsAaD~Ll 803 (961)
..+++-|++|+..++.+.+ +++++|.||||| .+.+-.+++.+ .. ..+.++||.+||...|.++.
T Consensus 29 ~~pt~iQ~~aip~il~g~d---vi~~ApTGsGKT-----la~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~ 100 (423)
T PRK04837 29 HNCTPIQALALPLTLAGRD---VAGQAQTGTGKT-----MAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIH 100 (423)
T ss_pred CCCCHHHHHHHHHHhCCCc---EEEECCCCchHH-----HHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHH
Confidence 3578999999999998763 699999999999 44333333333 21 12468999999999999987
Q ss_pred HHHHhhCC--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhh-ccceEEEEeeccchhhh-ccCCCCCCccE
Q 002130 804 ECLMKDIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLH-NQGITAGHFSH 879 (961)
Q Consensus 804 eRL~~~l~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L-~~~rVVvtT~ssag~L~-~~~~~~g~Fdh 879 (961)
+.+..... +.++.-+... ....... +.+ ...+|||+|......+. ...+.-..+.+
T Consensus 101 ~~~~~l~~~~~~~v~~~~gg----~~~~~~~----------------~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~ 160 (423)
T PRK04837 101 ADAEPLAQATGLKLGLAYGG----DGYDKQL----------------KVLESGVDILIGTTGRLIDYAKQNHINLGAIQV 160 (423)
T ss_pred HHHHHHhccCCceEEEEECC----CCHHHHH----------------HHhcCCCCEEEECHHHHHHHHHcCCcccccccE
Confidence 76654211 1122111110 0011110 111 24579999986554322 22334457899
Q ss_pred EEEecCCCCChH
Q 002130 880 IFLIDASSATEP 891 (961)
Q Consensus 880 VIIDEASQAtEP 891 (961)
||||||-.+.+.
T Consensus 161 lViDEad~l~~~ 172 (423)
T PRK04837 161 VVLDEADRMFDL 172 (423)
T ss_pred EEEecHHHHhhc
Confidence 999999876553
No 65
>PRK02362 ski2-like helicase; Provisional
Probab=98.06 E-value=3.4e-05 Score=94.09 Aligned_cols=129 Identities=14% Similarity=0.048 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|++.|.+|+...+.... -++|..|.|+||| ....-+|++.+. .+.++|+++|+..-|++..+++.+. .
T Consensus 22 ~~l~p~Q~~ai~~~~~~g~--nvlv~APTGSGKT-----lia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~-~ 91 (737)
T PRK02362 22 EELYPPQAEAVEAGLLDGK--NLLAAIPTASGKT-----LIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERF-E 91 (737)
T ss_pred CcCCHHHHHHHHHHHhCCC--cEEEECCCcchHH-----HHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHh-h
Confidence 4689999999998443322 3699999999999 443334455454 4789999999999999999988752 1
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccC-CCCCCccEEEEecCCCCCh
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~-~~~g~FdhVIIDEASQAtE 890 (961)
.. -+|++....+ +. ...+.+.+..|||+|......+...+ ..-..+++||||||....+
T Consensus 92 ~~-g~~v~~~tGd------------------~~-~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d 151 (737)
T PRK02362 92 EL-GVRVGISTGD------------------YD-SRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDS 151 (737)
T ss_pred cC-CCEEEEEeCC------------------cC-ccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCC
Confidence 11 1222211100 00 01123456789999976554333211 1224689999999976654
No 66
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.06 E-value=2.7e-05 Score=89.89 Aligned_cols=132 Identities=10% Similarity=0.035 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHH-HHHHHHHHHhC-------CCCeEEEEecchHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVV-REAVLQIRRRS-------PKSRILICAPWNRTCDKLME 804 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TL-VeaIlQLlk~~-------p~~RILVcAPSNsAaD~Lle 804 (961)
.+++.|.+|+..++.+.+ ++|.+|.||||| ... +-++.++++.. ...++||.+||..-|..+.+
T Consensus 109 ~~~~iQ~~ai~~~~~G~d---vi~~apTGSGKT-----lay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~ 180 (475)
T PRK01297 109 YCTPIQAQVLGYTLAGHD---AIGRAQTGTGKT-----AAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAK 180 (475)
T ss_pred CCCHHHHHHHHHHhCCCC---EEEECCCCChHH-----HHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHH
Confidence 578999999999998753 689999999999 332 22333343321 14689999999999999888
Q ss_pred HHHhhCC--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc-CCCCCCccEEE
Q 002130 805 CLMKDIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIF 881 (961)
Q Consensus 805 RL~~~l~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~-~~~~g~FdhVI 881 (961)
.+..... +..+..+... .+....+... .-...+|||+|-.....+... .+.-..+++||
T Consensus 181 ~~~~l~~~~~~~v~~~~gg----~~~~~~~~~~--------------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lV 242 (475)
T PRK01297 181 DAAALTKYTGLNVMTFVGG----MDFDKQLKQL--------------EARFCDILVATPGRLLDFNQRGEVHLDMVEVMV 242 (475)
T ss_pred HHHHhhccCCCEEEEEEcc----CChHHHHHHH--------------hCCCCCEEEECHHHHHHHHHcCCcccccCceEE
Confidence 8765322 1122221110 0011111100 013468999997655332221 22234689999
Q ss_pred EecCCCCCh
Q 002130 882 LIDASSATE 890 (961)
Q Consensus 882 IDEASQAtE 890 (961)
||||....+
T Consensus 243 iDEah~l~~ 251 (475)
T PRK01297 243 LDEADRMLD 251 (475)
T ss_pred echHHHHHh
Confidence 999987654
No 67
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.05 E-value=7.9e-06 Score=86.23 Aligned_cols=157 Identities=14% Similarity=0.156 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhcc----------CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCC---eEEEEecchHHHHHHH
Q 002130 737 DSNSAVHQILSFE----------GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS---RILICAPWNRTCDKLM 803 (961)
Q Consensus 737 eQr~AV~~ILs~~----------~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~---RILVcAPSNsAaD~Ll 803 (961)
.|++||..++... ...-.||.-.+|+||| .+.+.++..+....+.. ++||++|. ...+.-.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT-----~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~ 74 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKT-----ITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWK 74 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHH-----HHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCch-----hhhhhhhhhhhhccccccccceeEeecc-chhhhhh
Confidence 4899999887653 2233577779999999 77777776666543333 59999999 6667777
Q ss_pred HHHHhhCCC--CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh----hhccCCCCCCc
Q 002130 804 ECLMKDIPA--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR----LHNQGITAGHF 877 (961)
Q Consensus 804 eRL~~~l~~--~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~----L~~~~~~~g~F 877 (961)
..+.+...+ .+++.+.... .. . .. ....+..+.||++|...... .....+...+|
T Consensus 75 ~E~~~~~~~~~~~v~~~~~~~-------~~-~---------~~--~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~ 135 (299)
T PF00176_consen 75 EEIEKWFDPDSLRVIIYDGDS-------ER-R---------RL--SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKW 135 (299)
T ss_dssp HHHHHHSGT-TS-EEEESSSC-------HH-H---------HT--TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEE
T ss_pred hhhcccccccccccccccccc-------cc-c---------cc--cccccccceeeeccccccccccccccccccccccc
Confidence 777765422 3333332221 00 0 00 11234677899999887661 00111223469
Q ss_pred cEEEEecCCCCChH--HHHHHHhccccCCCeEEEEeCCCCCCcc
Q 002130 878 SHIFLIDASSATEP--ETMIVLGNLANENTRVIVTGAPHNSPSR 919 (961)
Q Consensus 878 dhVIIDEASQAtEP--EaLIPLa~LA~~~trVVLaGDpkQLpPv 919 (961)
++||||||..+... ...-.+..+ ....+++|.|-|.+=.+.
T Consensus 136 ~~vIvDEaH~~k~~~s~~~~~l~~l-~~~~~~lLSgTP~~n~~~ 178 (299)
T PF00176_consen 136 DRVIVDEAHRLKNKDSKRYKALRKL-RARYRWLLSGTPIQNSLE 178 (299)
T ss_dssp EEEEETTGGGGTTTTSHHHHHHHCC-CECEEEEE-SS-SSSGSH
T ss_pred eeEEEeccccccccccccccccccc-ccceEEeecccccccccc
Confidence 99999999776333 333334433 356799999998887653
No 68
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.05 E-value=5.2e-05 Score=69.67 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTC 799 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAa 799 (961)
++.+.+++...+.......++|+|||||||| + ++..+...+.. .+..|+.+.....+.
T Consensus 3 ~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT-----~-l~~~i~~~~~~-~~~~v~~~~~~~~~~ 60 (151)
T cd00009 3 QEEAIEALREALELPPPKNLLLYGPPGTGKT-----T-LARAIANELFR-PGAPFLYLNASDLLE 60 (151)
T ss_pred hHHHHHHHHHHHhCCCCCeEEEECCCCCCHH-----H-HHHHHHHHhhc-CCCCeEEEehhhhhh
Confidence 4556666666665533457899999999999 4 44444443332 355666665544443
No 69
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=98.03 E-value=1.2e-05 Score=93.08 Aligned_cols=156 Identities=12% Similarity=0.095 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC--
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI-- 810 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l-- 810 (961)
.++..|+.|+-.+.. ++-.|.|-.|+||| .+|+.-++.+...+|+.||+++..|..-+-.+..++.+++
T Consensus 162 nfD~~Q~kaa~~~~~----G~qrIrGLAGSGKT-----~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~ 232 (660)
T COG3972 162 NFDTDQTKAAFQSGF----GKQRIRGLAGSGKT-----ELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFFFM 232 (660)
T ss_pred cccchhheeeeecCC----chhhhhcccCCCch-----hHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHHHHH
Confidence 567888888765533 34589999999999 8888888888888899999999999999888877776621
Q ss_pred -------CCCceEecccccccccCccHHHHHhhhhcccc-------cCCChhhhhccceEEEEeeccchhhhccCCCCCC
Q 002130 811 -------PASEMFRANAAFREADGVSDEIFQVSLVEREC-------FSCPPLEELRQYKVISSTFVSSFRLHNQGITAGH 876 (961)
Q Consensus 811 -------~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~-------F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~ 876 (961)
.+..++|.+.+.-.-...-......|...... |+....+.| +..-....
T Consensus 233 ~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli-----------------~~~~~~~~ 295 (660)
T COG3972 233 RVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELI-----------------ADINNKKA 295 (660)
T ss_pred HhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHH-----------------Hhhhcccc
Confidence 12345666554322222222222222221111 222111211 11112447
Q ss_pred ccEEEEecCCCCChHHHHHHHhcccc-CCCeEEEEeCCCCC
Q 002130 877 FSHIFLIDASSATEPETMIVLGNLAN-ENTRVIVTGAPHNS 916 (961)
Q Consensus 877 FdhVIIDEASQAtEPEaLIPLa~LA~-~~trVVLaGDpkQL 916 (961)
+|||+|||+ |- -|...+-|..+.. ..+|+|.|||.-|-
T Consensus 296 yD~ilIDE~-QD-FP~~F~~Lcf~~tkd~KrlvyAyDelQn 334 (660)
T COG3972 296 YDYILIDES-QD-FPQSFIDLCFMVTKDKKRLVYAYDELQN 334 (660)
T ss_pred ccEEEeccc-cc-CCHHHHHHHHHHhcCcceEEEehHhhhc
Confidence 999999998 53 4777888876654 46899999999886
No 70
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.98 E-value=6.2e-05 Score=91.15 Aligned_cols=132 Identities=10% Similarity=-0.028 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHhc--c-----CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSF--E-----GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 734 LN~eQr~AV~~ILs~--~-----~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL 806 (961)
....|..||.+++.. . +..-.||+-+.||||| .|++.++..+++.....+||++++...-++++.+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT-----~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKT-----LTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCcc-----HHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHH
Confidence 467899999998754 1 1224689999999999 999999988887667789999999999999999998
Q ss_pred HhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhc---cCCCCCCcc-EEEE
Q 002130 807 MKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN---QGITAGHFS-HIFL 882 (961)
Q Consensus 807 ~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~---~~~~~g~Fd-hVII 882 (961)
..... ..+.++.. ..++..... . ...+|||+|.-+...... ..+....++ +|||
T Consensus 314 ~~~~~-~~~~~~~s--------~~~L~~~l~--~-----------~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIv 371 (667)
T TIGR00348 314 QSLQK-DCAERIES--------IAELKRLLE--K-----------DDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIF 371 (667)
T ss_pred HhhCC-CCCcccCC--------HHHHHHHHh--C-----------CCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEE
Confidence 76321 11111111 011111000 0 236799999877653111 112222333 8999
Q ss_pred ecCCCCChHH
Q 002130 883 IDASSATEPE 892 (961)
Q Consensus 883 DEASQAtEPE 892 (961)
|||.......
T Consensus 372 DEaHrs~~~~ 381 (667)
T TIGR00348 372 DEAHRSQYGE 381 (667)
T ss_pred EcCccccchH
Confidence 9998776554
No 71
>PRK13766 Hef nuclease; Provisional
Probab=97.96 E-value=4.5e-05 Score=92.99 Aligned_cols=130 Identities=17% Similarity=0.052 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
..-+.|++++..++... .||..|.|+||| .+.+.+++..+. .++.+|||.+||..-+++..+.+.+.+..
T Consensus 15 ~~r~yQ~~~~~~~l~~n----~lv~~ptG~GKT-----~~a~~~i~~~l~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 15 EARLYQQLLAATALKKN----TLVVLPTGLGKT-----AIALLVIAERLH-KKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CccHHHHHHHHHHhcCC----eEEEcCCCccHH-----HHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 44677999999988762 599999999999 544445555554 46789999999999999988888764321
Q ss_pred --CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh-hhccCCCCCCccEEEEecCCCCC
Q 002130 813 --SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 813 --~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~-L~~~~~~~g~FdhVIIDEASQAt 889 (961)
..+..+... ....-+ .+...+++||++|...... +....+....|++||||||..+.
T Consensus 85 ~~~~v~~~~g~------~~~~~r--------------~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~ 144 (773)
T PRK13766 85 PEEKIVVFTGE------VSPEKR--------------AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAV 144 (773)
T ss_pred CCceEEEEeCC------CCHHHH--------------HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccc
Confidence 233322211 111100 1122467899999765533 22233445679999999998877
Q ss_pred hHH
Q 002130 890 EPE 892 (961)
Q Consensus 890 EPE 892 (961)
...
T Consensus 145 ~~~ 147 (773)
T PRK13766 145 GNY 147 (773)
T ss_pred ccc
Confidence 553
No 72
>PRK10689 transcription-repair coupling factor; Provisional
Probab=97.95 E-value=4.4e-05 Score=97.21 Aligned_cols=130 Identities=11% Similarity=0.092 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHHhcc---CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFE---GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~---~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..+++.|++|+..++... .+.-.||+|+.|+||| .+.+.++...+. .+.++||.+||..-|.++.+.+.+
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT-----~val~aa~~~~~--~g~qvlvLvPT~eLA~Q~~~~f~~ 671 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT-----EVAMRAAFLAVE--NHKQVAVLVPTTLLAQQHYDNFRD 671 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHH-----HHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHH
Confidence 468999999999999751 1234799999999999 665555554444 478999999999999999988876
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEecCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEAS 886 (961)
.+.... +++....+.. ...+.... ++.+ ...+|||+|.... ...+.-.++++||||||.
T Consensus 672 ~~~~~~-v~i~~l~g~~-s~~e~~~i-------------l~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEah 732 (1147)
T PRK10689 672 RFANWP-VRIEMLSRFR-SAKEQTQI-------------LAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEH 732 (1147)
T ss_pred hhccCC-ceEEEEECCC-CHHHHHHH-------------HHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechh
Confidence 443221 2222111110 00111000 0111 3468999997422 223344579999999984
Q ss_pred C
Q 002130 887 S 887 (961)
Q Consensus 887 Q 887 (961)
.
T Consensus 733 r 733 (1147)
T PRK10689 733 R 733 (1147)
T ss_pred h
Confidence 3
No 73
>PTZ00110 helicase; Provisional
Probab=97.94 E-value=9e-05 Score=87.69 Aligned_cols=136 Identities=13% Similarity=0.039 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-----CCCCeEEEEecchHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-----SPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-----~p~~RILVcAPSNsAaD~LleRL 806 (961)
..+.+-|.+|+..+|.+++ +|+.+|.|+|||++ .+.-++..+... ..+.++||.+||..-|.++.+.+
T Consensus 151 ~~pt~iQ~~aip~~l~G~d---vI~~ApTGSGKTla----ylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~ 223 (545)
T PTZ00110 151 TEPTPIQVQGWPIALSGRD---MIGIAETGSGKTLA----FLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQC 223 (545)
T ss_pred CCCCHHHHHHHHHHhcCCC---EEEEeCCCChHHHH----HHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHH
Confidence 3578999999999998763 68999999999921 122333444332 23568999999999999988887
Q ss_pred HhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc-CCCCCCccEEEEecC
Q 002130 807 MKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDA 885 (961)
Q Consensus 807 ~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~-~~~~g~FdhVIIDEA 885 (961)
.+...... +|.... ....+..-.. .......+|||+|....-.+... ...-..+++||||||
T Consensus 224 ~~~~~~~~-i~~~~~---~gg~~~~~q~-------------~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEA 286 (545)
T PTZ00110 224 NKFGASSK-IRNTVA---YGGVPKRGQI-------------YALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEA 286 (545)
T ss_pred HHHhcccC-ccEEEE---eCCCCHHHHH-------------HHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehH
Confidence 76322111 111100 0111111000 01123568999997644332221 222346899999999
Q ss_pred CCCChH
Q 002130 886 SSATEP 891 (961)
Q Consensus 886 SQAtEP 891 (961)
-.+.+.
T Consensus 287 d~mld~ 292 (545)
T PTZ00110 287 DRMLDM 292 (545)
T ss_pred Hhhhhc
Confidence 877653
No 74
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.92 E-value=3.3e-05 Score=85.23 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=43.1
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
++|.||.|+||| .+...+++..+......||+++.|+...++.+.+++.+.+.
T Consensus 2 vvi~apTGsGKT-----~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~ 54 (358)
T TIGR01587 2 LVIEAPTGYGKT-----EAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFG 54 (358)
T ss_pred EEEEeCCCCCHH-----HHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhC
Confidence 589999999999 55555555555555678999999999999999999988543
No 75
>PRK09401 reverse gyrase; Reviewed
Probab=97.89 E-value=5.5e-05 Score=96.58 Aligned_cols=132 Identities=14% Similarity=0.084 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
.+.+.|+.|+..++.++ -++|.+|.|+||| ..+.-++..+ . ..+.++||.+||..-|+++.+++......
T Consensus 80 ~pt~iQ~~~i~~il~g~---dv~i~ApTGsGKT-----~f~l~~~~~l-~-~~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLGE---SFAIIAPTGVGKT-----TFGLVMSLYL-A-KKGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred CCcHHHHHHHHHHHCCC---cEEEEcCCCCCHH-----HHHHHHHHHH-H-hcCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 56889999999999875 3689999999999 4433333332 2 24789999999999999999999874321
Q ss_pred Cce-EecccccccccCccH-HHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEecCCCC
Q 002130 813 SEM-FRANAAFREADGVSD-EIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 813 ~~i-lRV~a~sR~~~~V~~-~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQA 888 (961)
..+ +.+.... ..++. +... ..+.+ ...+|||+|......... .+....|++||||||-.+
T Consensus 150 ~~~~~~~~~g~---~~~~~~ek~~------------~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~~ 213 (1176)
T PRK09401 150 VGCGVKILYYH---SSLKKKEKEE------------FLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDAV 213 (1176)
T ss_pred cCceEEEEEcc---CCcchhHHHH------------HHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHHh
Confidence 111 1111000 01110 0000 00111 246899999754433222 344456999999999766
Q ss_pred Ch
Q 002130 889 TE 890 (961)
Q Consensus 889 tE 890 (961)
++
T Consensus 214 L~ 215 (1176)
T PRK09401 214 LK 215 (1176)
T ss_pred hh
Confidence 63
No 76
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.88 E-value=4e-05 Score=90.05 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=70.4
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHHHH
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQ 834 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~ 834 (961)
||+||.|+||| .+...++.+++.. +.++|+.+|+..-+..+.++|.+.+. .++..+.+. +... .+
T Consensus 1 LL~g~TGsGKT-----~v~l~~i~~~l~~--g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~------~~~~-er 65 (505)
T TIGR00595 1 LLFGVTGSGKT-----EVYLQAIEKVLAL--GKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSG------LSDS-EK 65 (505)
T ss_pred CccCCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECC------CCHH-HH
Confidence 68999999999 7777778777765 78999999999999999999987653 334333321 1111 01
Q ss_pred hhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCC
Q 002130 835 VSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 835 y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQA 888 (961)
+..|.. -.-.+++|||+|..... .+-..+++|||||+...
T Consensus 66 ~~~~~~--------~~~g~~~IVVGTrsalf------~p~~~l~lIIVDEeh~~ 105 (505)
T TIGR00595 66 LQAWRK--------VKNGEILVVIGTRSALF------LPFKNLGLIIVDEEHDS 105 (505)
T ss_pred HHHHHH--------HHcCCCCEEECChHHHc------CcccCCCEEEEECCCcc
Confidence 111100 01146789999976542 13347899999998554
No 77
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.88 E-value=6.2e-05 Score=88.36 Aligned_cols=135 Identities=12% Similarity=0.082 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH-------hCCCCeEEEEecchHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-------RSPKSRILICAPWNRTCDKLME 804 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk-------~~p~~RILVcAPSNsAaD~Lle 804 (961)
..+++-|.+|+..++.++ -+++.+|.|+|||++ .++-++.+++. ...+.++||.+||..-|.++.+
T Consensus 142 ~~ptpiQ~~aip~il~g~---dviv~ApTGSGKTla----yllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~ 214 (518)
T PLN00206 142 EFPTPIQMQAIPAALSGR---SLLVSADTGSGKTAS----FLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVED 214 (518)
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEEecCCCCccHH----HHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHH
Confidence 468999999999999775 369999999999932 12223333322 1245689999999999988766
Q ss_pred HHHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh-hhccCCCCCCccEEEEe
Q 002130 805 CLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHNQGITAGHFSHIFLI 883 (961)
Q Consensus 805 RL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~-L~~~~~~~g~FdhVIID 883 (961)
.+........ ++...... -..+...+. .......|||+|...... +....+.-..+++||||
T Consensus 215 ~~~~l~~~~~-~~~~~~~g-G~~~~~q~~---------------~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViD 277 (518)
T PLN00206 215 QAKVLGKGLP-FKTALVVG-GDAMPQQLY---------------RIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLD 277 (518)
T ss_pred HHHHHhCCCC-ceEEEEEC-CcchHHHHH---------------HhcCCCCEEEECHHHHHHHHHcCCccchheeEEEee
Confidence 6554221111 11100000 001111111 111346899999764432 22223344578999999
Q ss_pred cCCCCCh
Q 002130 884 DASSATE 890 (961)
Q Consensus 884 EASQAtE 890 (961)
||-.+.+
T Consensus 278 Ead~ml~ 284 (518)
T PLN00206 278 EVDCMLE 284 (518)
T ss_pred cHHHHhh
Confidence 9977654
No 78
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.83 E-value=8.5e-05 Score=83.18 Aligned_cols=121 Identities=12% Similarity=0.183 Sum_probs=89.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcc-CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHH
Q 002130 726 LCPYSNYKLDSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLME 804 (961)
Q Consensus 726 ~~~~~n~~LN~eQr~AV~~ILs~~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~Lle 804 (961)
...|. -.|.+.|+.|-...+..- ....+|||.-.|.||| -.|-++|.+.+.+ |.+|.|++|--.-+-+|..
T Consensus 91 ~L~W~-G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKT-----EMif~~i~~al~~--G~~vciASPRvDVclEl~~ 162 (441)
T COG4098 91 VLQWK-GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKT-----EMIFQGIEQALNQ--GGRVCIASPRVDVCLELYP 162 (441)
T ss_pred eeeec-cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCch-----hhhHHHHHHHHhc--CCeEEEecCcccchHHHHH
Confidence 45665 689999999988877652 2346899999999999 7888888888876 9999999998888888888
Q ss_pred HHHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEec
Q 002130 805 CLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLID 884 (961)
Q Consensus 805 RL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDE 884 (961)
||...+.+.+|.-++..+ ...| ++.+||+|.-..-++. ..||++||||
T Consensus 163 Rlk~aF~~~~I~~Lyg~S-----------------~~~f---------r~plvVaTtHQLlrFk------~aFD~liIDE 210 (441)
T COG4098 163 RLKQAFSNCDIDLLYGDS-----------------DSYF---------RAPLVVATTHQLLRFK------QAFDLLIIDE 210 (441)
T ss_pred HHHHhhccCCeeeEecCC-----------------chhc---------cccEEEEehHHHHHHH------hhccEEEEec
Confidence 888766655555444321 1222 2567888876554443 3799999999
Q ss_pred CC
Q 002130 885 AS 886 (961)
Q Consensus 885 AS 886 (961)
.-
T Consensus 211 VD 212 (441)
T COG4098 211 VD 212 (441)
T ss_pred cc
Confidence 73
No 79
>PRK00254 ski2-like helicase; Provisional
Probab=97.81 E-value=0.00018 Score=87.56 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHH-HHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQ-ILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~-ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..||+.|.+|+.. ++.+. -++|.+|.|+||| .+..-+|++.+.. .+.++|+++|+..-|++..+++.+.
T Consensus 22 ~~l~~~Q~~ai~~~~~~g~---nvlv~apTGsGKT-----~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~~- 91 (720)
T PRK00254 22 EELYPPQAEALKSGVLEGK---NLVLAIPTASGKT-----LVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKDW- 91 (720)
T ss_pred CCCCHHHHHHHHHHHhCCC---cEEEECCCCcHHH-----HHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHHH-
Confidence 4689999999987 44443 4799999999999 4332333333332 4679999999999999999888752
Q ss_pred CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhc-cCCCCCCccEEEEecCCCCC
Q 002130 811 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 811 ~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~-~~~~~g~FdhVIIDEASQAt 889 (961)
... -+++.....+ .+. ..+.+.+.+|||+|......+.. ....-...++||||||....
T Consensus 92 ~~~-g~~v~~~~Gd---~~~----------------~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~ 151 (720)
T PRK00254 92 EKL-GLRVAMTTGD---YDS----------------TDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIG 151 (720)
T ss_pred hhc-CCEEEEEeCC---CCC----------------chhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccC
Confidence 110 0222211100 000 01224567899999655433322 11123468999999997654
Q ss_pred h
Q 002130 890 E 890 (961)
Q Consensus 890 E 890 (961)
+
T Consensus 152 ~ 152 (720)
T PRK00254 152 S 152 (720)
T ss_pred C
Confidence 3
No 80
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.80 E-value=8.4e-05 Score=94.94 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
.+.+-|+.++..++.++ -+++++|.|+||| .++.-++.. +.. .+.++||.+||..-|.++.+++......
T Consensus 78 ~p~~iQ~~~i~~il~G~---d~vi~ApTGsGKT-----~f~l~~~~~-l~~-~g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGD---SFAIIAPTGVGKT-----TFGLAMSLF-LAK-KGKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred CCcHHHHHHHHHHhCCC---eEEEECCCCCCHH-----HHHHHHHHH-HHh-cCCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 46789999999999876 3689999999999 433333333 332 3789999999999999999998874322
Q ss_pred --CceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEecCCCC
Q 002130 813 --SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 813 --~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQA 888 (961)
....+++... ..++..-+.- .++.+ ...+|||+|......... .+.. +|++||||||-++
T Consensus 148 ~~i~~~~i~~~~---Gg~~~~e~~~-----------~~~~l~~~~~dIlV~Tp~rL~~~~~-~l~~-~~~~iVvDEaD~~ 211 (1171)
T TIGR01054 148 AGVGTVNIGAYH---SRLPTKEKKE-----------FMERIENGDFDILITTTMFLSKNYD-ELGP-KFDFIFVDDVDAL 211 (1171)
T ss_pred cCCceeeeeeec---CCCCHHHHHH-----------HHHHHhcCCCCEEEECHHHHHHHHH-HhcC-CCCEEEEeChHhh
Confidence 2233322110 1111111000 00111 247899999754432211 1222 8999999999887
Q ss_pred Ch
Q 002130 889 TE 890 (961)
Q Consensus 889 tE 890 (961)
++
T Consensus 212 L~ 213 (1171)
T TIGR01054 212 LK 213 (1171)
T ss_pred hh
Confidence 65
No 81
>PLN03025 replication factor C subunit; Provisional
Probab=97.80 E-value=9.8e-05 Score=81.36 Aligned_cols=42 Identities=17% Similarity=0.070 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
-|++..+.++.++.....+.++++|||||||| +++.++...+
T Consensus 17 g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKT------tla~~la~~l 58 (319)
T PLN03025 17 GNEDAVSRLQVIARDGNMPNLILSGPPGTGKT------TSILALAHEL 58 (319)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHH------HHHHHHHHHH
Confidence 46777777777776654456899999999999 5555554433
No 82
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=97.74 E-value=4.3e-05 Score=92.40 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..++.+|+.|+..++..+ ..+|-|+|||||| .++ ..+..++.. .+..||++|++..|+-.+.+.-.. .
T Consensus 318 ~~~~~~q~~a~~vl~~de---~smlt~~~~~~~~-----~~~-~~~~~l~~~-~~~~~l~aa~tG~a~~~l~e~tg~--~ 385 (696)
T COG0507 318 LRLSLEQKEALDVLVVDE---VSMLTGGPGTGKT-----TAI-KAIARLIKE-GDGDQLLAAPTGKAAKRLNESTGL--E 385 (696)
T ss_pred CCcCcccHHHHHHHhcCC---eeEEeccCCcchH-----HHH-HHHHHHHHh-cCCcEEeechhhHHHHHHHHhhCc--c
Confidence 468999999999998765 4689999999999 444 455555554 244599999999999777765310 0
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChH
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 891 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP 891 (961)
... ++..+. .....+ ........|.+||||++....
T Consensus 386 a~t-------------i~~~~~----~~~~~~--------------------------~~~~~~~~d~~iiDe~~ml~~- 421 (696)
T COG0507 386 ART-------------IHRLLG----LWEKTG--------------------------NNEEPLDGDLLIIDEASMLDT- 421 (696)
T ss_pred hhH-------------HHHHHh----ccccCC--------------------------CCCCccccceeEEehhhhHHH-
Confidence 001 111100 000000 011234678999999987766
Q ss_pred HHHHHHhccccCCCeEEEEeCCCCCCccccChH
Q 002130 892 ETMIVLGNLANENTRVIVTGAPHNSPSRVRSDI 924 (961)
Q Consensus 892 EaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~ 924 (961)
....-+..-.....++|++||+.||+++.....
T Consensus 422 ~~~~~l~~~i~~~a~~i~vGD~~ql~~v~~g~~ 454 (696)
T COG0507 422 SLAFGLLSAIGKLAKVILVGDVDQLPSVGAGAV 454 (696)
T ss_pred HHhhhhhcccccCCeEEEeCCHHhcCCCCCCch
Confidence 333333212346789999999999999987764
No 83
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.72 E-value=0.00015 Score=88.79 Aligned_cols=132 Identities=9% Similarity=-0.016 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|.+.|.+|+..++.+++ ++|..|.|+||| ....-.|++.+...++.++|+.+||..-|..+.+++.+..
T Consensus 35 ~~p~~~Q~~ai~~il~G~n---vvv~apTGSGKT-----la~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~- 105 (742)
T TIGR03817 35 HRPWQHQARAAELAHAGRH---VVVATGTASGKS-----LAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT- 105 (742)
T ss_pred CcCCHHHHHHHHHHHCCCC---EEEECCCCCcHH-----HHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-
Confidence 3689999999999998763 699999999999 3333334444444567899999999999999999987632
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh--hhccC---CCCCCccEEEEecCC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHNQG---ITAGHFSHIFLIDAS 886 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~~~---~~~g~FdhVIIDEAS 886 (961)
. .-+|+... ..+.+.+.+. ....+.+||++|...... +.... ..-.+.++||||||.
T Consensus 106 ~-~~i~v~~~---~Gdt~~~~r~--------------~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah 167 (742)
T TIGR03817 106 L-RGVRPATY---DGDTPTEERR--------------WAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH 167 (742)
T ss_pred c-CCeEEEEE---eCCCCHHHHH--------------HHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh
Confidence 1 11222111 0111111110 112356899998754321 11000 002367999999997
Q ss_pred CCCh
Q 002130 887 SATE 890 (961)
Q Consensus 887 QAtE 890 (961)
....
T Consensus 168 ~~~g 171 (742)
T TIGR03817 168 SYRG 171 (742)
T ss_pred hccC
Confidence 7543
No 84
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.68 E-value=0.00029 Score=77.28 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCC----CeEEEEecchHHHHHHHHHHHh
Q 002130 735 DSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK----SRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 735 N~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~----~RILVcAPSNsAaD~LleRL~~ 808 (961)
-+.|++-++.|... ......+|.+|.||||| ..+.-+++..+..... .+|++++.|+.-.+.++..|.+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKT-----l~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKT-----LSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchh-----HHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 57899977766644 12246799999999999 4433333333333233 3899999999988887766654
No 85
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.68 E-value=0.00029 Score=77.28 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCC----CeEEEEecchHHHHHHHHHHHh
Q 002130 735 DSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK----SRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 735 N~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~----~RILVcAPSNsAaD~LleRL~~ 808 (961)
-+.|++-++.|... ......+|.+|.||||| ..+.-+++..+..... .+|++++.|+.-.+.++..|.+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKT-----l~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKT-----LSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchh-----HHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 57899977766644 12246799999999999 4433333333333233 3899999999988887766654
No 86
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=97.67 E-value=6.6e-05 Score=84.07 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
..++.|+.=+++|.... ..+=.||.||||| +.-+.+..+.+.+..-.|||++-| ||| +=+||. ++++
T Consensus 128 ~kt~~Q~~y~eai~~~d---i~fGiGpAGTGKT-----yLava~av~al~~~~v~rIiLtRP---aVE-AGEklG-fLPG 194 (348)
T COG1702 128 PKTPGQNMYPEAIEEHD---IVFGIGPAGTGKT-----YLAVAKAVDALGAGQVRRIILTRP---AVE-AGEKLG-FLPG 194 (348)
T ss_pred ecChhHHHHHHHHHhcC---eeeeecccccCCh-----hhhHHhHhhhhhhcccceeeecCc---chh-cCcccC-cCCC
Confidence 46899999999998764 4567799999999 666666667777766779999988 443 223332 2332
Q ss_pred CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEE-EEeeccchhhhccCCCCCCccEEEEecCCCCChH
Q 002130 813 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVI-SSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 891 (961)
Q Consensus 813 ~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVV-vtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP 891 (961)
..-..+....|.+-+.-.++..... .+.+....|| |+-+. ......+ .=-+||+||| |.+-+
T Consensus 195 dl~eKvdPylRPLyDAl~d~l~~~~----------~~~~~e~~vIEiAPlA---yMRGRTL---~dAfVIlDEa-QNtT~ 257 (348)
T COG1702 195 DLREKVDPYLRPLYDALYDILGAER----------VEALDERGVIEIAPLA---YMRGRTL---NDAFVILDEA-QNTTV 257 (348)
T ss_pred chhhhcccccccHHHHHHHHhhHHH----------HhhhhhcCcEEecchh---hhhcCCC---CCeEEEEecc-cccch
Confidence 2111111111211111111111110 1111111222 11110 0001111 1234999999 66777
Q ss_pred HHHHHHhccccCCCeEEEEeCCCCC--CccccChH
Q 002130 892 ETMIVLGNLANENTRVIVTGAPHNS--PSRVRSDI 924 (961)
Q Consensus 892 EaLIPLa~LA~~~trVVLaGDpkQL--pPvV~S~~ 924 (961)
+.|-=...-..-+.+.|+.||+.|+ +..+.|.+
T Consensus 258 ~QmKMfLTRiGf~skmvItGD~tQiDLp~~vkSGL 292 (348)
T COG1702 258 GQMKMFLTRIGFESKMVITGDITQIDLPRGVKSGL 292 (348)
T ss_pred hhhceeeeeecCCceEEEEcCcccccCCCcccccc
Confidence 7653211112356899999999997 66776654
No 87
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.66 E-value=0.00016 Score=83.87 Aligned_cols=127 Identities=9% Similarity=-0.003 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..+.+.|++||..++.++ -++|..|.|+||| .+ ..+-.++ .+...||.+|+..-+....++|...
T Consensus 10 ~~~r~~Q~~ai~~~l~g~---dvlv~apTGsGKT-----l~--y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~-- 74 (470)
T TIGR00614 10 SSFRPVQLEVINAVLLGR---DCFVVMPTGGGKS-----LC--YQLPALC---SDGITLVISPLISLMEDQVLQLKAS-- 74 (470)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCCcHh-----HH--HHHHHHH---cCCcEEEEecHHHHHHHHHHHHHHc--
Confidence 468999999999999876 3699999999999 22 2222222 2567899999999888888887642
Q ss_pred CCceEecccccccccCccHHHHH-hhhhcccccCCChhhhhccceEEEEeeccchh---hhccCC-CCCCccEEEEecCC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQ-VSLVERECFSCPPLEELRQYKVISSTFVSSFR---LHNQGI-TAGHFSHIFLIDAS 886 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~-y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~---L~~~~~-~~g~FdhVIIDEAS 886 (961)
+....-++... -..+... +... .-.+.+||++|...... +.. .+ ...++++||||||.
T Consensus 75 gi~~~~l~~~~-----~~~~~~~i~~~~-----------~~~~~~il~~TPe~l~~~~~~~~-~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 75 GIPATFLNSSQ-----SKEQQKNVLTDL-----------KDGKIKLLYVTPEKCSASNRLLQ-TLEERKGITLIAVDEAH 137 (470)
T ss_pred CCcEEEEeCCC-----CHHHHHHHHHHH-----------hcCCCCEEEECHHHHcCchhHHH-HHHhcCCcCEEEEeCCc
Confidence 22222222210 0000000 0000 11346788888654321 111 11 34689999999997
Q ss_pred CCCh
Q 002130 887 SATE 890 (961)
Q Consensus 887 QAtE 890 (961)
...+
T Consensus 138 ~i~~ 141 (470)
T TIGR00614 138 CISQ 141 (470)
T ss_pred ccCc
Confidence 6543
No 88
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=97.64 E-value=0.0014 Score=81.65 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=23.6
Q ss_pred ccccCCCCCCCCCCCCcccccccCCCCCCCCCCccccCCC
Q 002130 76 PNVSISEPTTKQPNAMSQQTEYGNKSSLKGNNEVSQSLKS 115 (961)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (961)
|....+.|+++...- +++..|+|.|+.|...+++=|..+
T Consensus 1432 p~~~~~~~~sp~~s~-~ssp~~s~tsp~ysptsp~ys~ts 1470 (1605)
T KOG0260|consen 1432 PWSNMSSPASPGSSY-SSSPGYSPTSPNYSPTSPSYSPTS 1470 (1605)
T ss_pred cccccCCCCCCCCCC-CCCCCCCCCCCCCCCCCCccCCCC
Confidence 444455676665554 477778888877774444444333
No 89
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=0.00019 Score=87.37 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 735 DSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 735 N~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
=+.|++.++.+... ......+|.+|.|||||+ .+|+.++..+.+.....+|..|+.||+-.+.+++.|.+
T Consensus 12 y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTl----slL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 12 YPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTI----SLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CHHHHHHHHHHHHHhccCCceEEeCCCCCCccH----HHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 47899999888865 233467999999999993 34444444433332236999999999999999998876
No 90
>PRK14701 reverse gyrase; Provisional
Probab=97.61 E-value=0.00023 Score=93.29 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
.+.+.|++++..+|.++ -+++++|.|+||| .... .+. +.....+.++||++||..-+.++.+++......
T Consensus 79 ~pt~iQ~~~i~~il~G~---d~li~APTGsGKT-----l~~~-~~a-l~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~ 148 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGK---SFSIVAPTGMGKS-----TFGA-FIA-LFLALKGKKCYIILPTTLLVKQTVEKIESFCEK 148 (1638)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEEcCCCCHH-----HHHH-HHH-HHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhh
Confidence 46889999999999876 3689999999999 4222 221 222224779999999999999999998863211
Q ss_pred Cc-eEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 813 SE-MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 813 ~~-ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
.. -+++.... ..++..-+. . .++.+ .+.+||++|......... .+...+|++||||||-.++
T Consensus 149 ~~~~v~v~~~~---g~~s~~e~~------~-----~~~~l~~g~~dILV~TPgrL~~~~~-~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 149 ANLDVRLVYYH---SNLRKKEKE------E-----FLERIENGDFDILVTTAQFLARNFP-EMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred cCCceeEEEEe---CCCCHHHHH------H-----HHHHHhcCCCCEEEECCchhHHhHH-HHhhCCCCEEEEECceecc
Confidence 10 02221110 111111000 0 00111 246899998653322111 1122579999999997665
Q ss_pred h
Q 002130 890 E 890 (961)
Q Consensus 890 E 890 (961)
+
T Consensus 214 ~ 214 (1638)
T PRK14701 214 K 214 (1638)
T ss_pred c
Confidence 3
No 91
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.60 E-value=0.00031 Score=90.10 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=84.3
Q ss_pred HHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEe
Q 002130 738 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFR 817 (961)
Q Consensus 738 Qr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilR 817 (961)
.+..+...|... ..++|.|++|+||| +-|-.+++.. ......+|+++-|-..||-.+++|+.+.+...---.
T Consensus 71 ~~~~Il~~l~~~--~vvii~g~TGSGKT-----TqlPq~lle~-~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~ 142 (1283)
T TIGR01967 71 KREDIAEAIAEN--QVVIIAGETGSGKT-----TQLPKICLEL-GRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEK 142 (1283)
T ss_pred HHHHHHHHHHhC--ceEEEeCCCCCCcH-----HHHHHHHHHc-CCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceE
Confidence 456666666542 26799999999999 5554443321 112235788888999999999999998653211122
Q ss_pred cccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCC-CCChHHHHHH
Q 002130 818 ANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS-SATEPETMIV 896 (961)
Q Consensus 818 V~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEAS-QAtEPEaLIP 896 (961)
+|..-|.-..+ =.+.+|+++|-...-.....+-.-..+++||||||. ...+-+.++.
T Consensus 143 VGY~vR~~~~~----------------------s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~ 200 (1283)
T TIGR01967 143 VGYKVRFHDQV----------------------SSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLG 200 (1283)
T ss_pred EeeEEcCCccc----------------------CCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHH
Confidence 33221211100 024577777764433222222223579999999998 4777766665
Q ss_pred H-hccc--cCCCeEEEEeCC
Q 002130 897 L-GNLA--NENTRVIVTGAP 913 (961)
Q Consensus 897 L-a~LA--~~~trVVLaGDp 913 (961)
+ ..+. ..+-|+|+..-.
T Consensus 201 lLk~il~~rpdLKlIlmSAT 220 (1283)
T TIGR01967 201 YLKQLLPRRPDLKIIITSAT 220 (1283)
T ss_pred HHHHHHhhCCCCeEEEEeCC
Confidence 2 2121 234567776543
No 92
>PRK04296 thymidine kinase; Provisional
Probab=97.57 E-value=8.5e-05 Score=76.38 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=29.4
Q ss_pred CCCccEEEEecCCCCChHHHHHHHhcc-ccCCCeEEEEeCCCCC
Q 002130 874 AGHFSHIFLIDASSATEPETMIVLGNL-ANENTRVIVTGAPHNS 916 (961)
Q Consensus 874 ~g~FdhVIIDEASQAtEPEaLIPLa~L-A~~~trVVLaGDpkQL 916 (961)
.+.+++|||||| |..+.+.++-|... +..+..||++|=..+.
T Consensus 76 ~~~~dvviIDEa-q~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 76 GEKIDCVLIDEA-QFLDKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCCEEEEEcc-ccCCHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 357899999999 76766655555444 5567789998855443
No 93
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.57 E-value=0.00062 Score=82.82 Aligned_cols=66 Identities=15% Similarity=0.053 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHH---------HHH----hCCCCeEEEEecchHHHHHH
Q 002130 736 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ---------IRR----RSPKSRILICAPWNRTCDKL 802 (961)
Q Consensus 736 ~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ---------Llk----~~p~~RILVcAPSNsAaD~L 802 (961)
.-|++++..++.++ .++++|+.|+||| ..+-..++. .+. .....+|+|.+|+..||.++
T Consensus 167 ~iQ~qil~~i~~gk---dvIv~A~TGSGKT-----tqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi 238 (675)
T PHA02653 167 DVQLKIFEAWISRK---PVVLTGGTGVGKT-----SQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLH 238 (675)
T ss_pred HHHHHHHHHHHhCC---CEEEECCCCCCch-----hHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHH
Confidence 34666777666554 5799999999999 444333221 121 12356899999999999999
Q ss_pred HHHHHhh
Q 002130 803 MECLMKD 809 (961)
Q Consensus 803 leRL~~~ 809 (961)
.+++.+.
T Consensus 239 ~~~i~~~ 245 (675)
T PHA02653 239 SITLLKS 245 (675)
T ss_pred HHHHHHH
Confidence 9888763
No 94
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00016 Score=82.63 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=31.3
Q ss_pred CccEEEEecCCCCChH--HHHHHHhccccCCCeEEEEeCCCCCCccccC
Q 002130 876 HFSHIFLIDASSATEP--ETMIVLGNLANENTRVIVTGAPHNSPSRVRS 922 (961)
Q Consensus 876 ~FdhVIIDEASQAtEP--EaLIPLa~LA~~~trVVLaGDpkQLpPvV~S 922 (961)
.=+++||||...-.-. +.|+|.. +.+.|+|+|-.-.=|-+..+
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~v----E~G~iilIGATTENPsF~ln 148 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPHV----ENGTIILIGATTENPSFELN 148 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhhh----cCCeEEEEeccCCCCCeeec
Confidence 4467899998654333 6677776 78999999998777665444
No 95
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.56 E-value=0.00025 Score=76.42 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
.--|+.-.+-+.-+....+-+-.+|.|||||||| +.+-.+...++-. .+.+.
T Consensus 29 IVGNe~tv~rl~via~~gnmP~liisGpPG~GKT-----Tsi~~LAr~LLG~-----------------~~ke~------ 80 (333)
T KOG0991|consen 29 IVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKT-----TSILCLARELLGD-----------------SYKEA------ 80 (333)
T ss_pred hhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchh-----hHHHHHHHHHhCh-----------------hhhhH------
Confidence 3457777777776655444456788999999999 5544333333321 11222
Q ss_pred CCceEecccc-cccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCCh
Q 002130 812 ASEMFRANAA-FREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 812 ~~~ilRV~a~-sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtE 890 (961)
++.+|+. .|.++.|...|+.|... + ..+++|.+..||+|||-.+|+
T Consensus 81 ---vLELNASdeRGIDvVRn~IK~FAQ~----------------k--------------v~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 81 ---VLELNASDERGIDVVRNKIKMFAQK----------------K--------------VTLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred ---hhhccCccccccHHHHHHHHHHHHh----------------h--------------ccCCCCceeEEEeeccchhhh
Confidence 3345543 24454455555443321 1 124788999999999988776
Q ss_pred HHHHHHHh---ccccCCCeEEEEeCC--CCCCccc-cChHHHhcCC-ChhHHHHHHc
Q 002130 891 PETMIVLG---NLANENTRVIVTGAP--HNSPSRV-RSDIARKNGL-KMSYFERLCL 940 (961)
Q Consensus 891 PEaLIPLa---~LA~~~trVVLaGDp--kQLpPvV-~S~~A~k~GL-~~SLFERL~~ 940 (961)
-.. -+|. .+-...+|+.|+-.. +=.-|+- ++...+-..| +.-++.||++
T Consensus 128 gAQ-QAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~ 183 (333)
T KOG0991|consen 128 GAQ-QALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLE 183 (333)
T ss_pred HHH-HHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHH
Confidence 532 2222 122367888887653 2233331 2222221122 4567888876
No 96
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.54 E-value=0.00013 Score=90.86 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHH-HHHHHHHh------CCCCeEEEEecchHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVRE-AVLQIRRR------SPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVe-aIlQLlk~------~p~~RILVcAPSNsAaD~LleR 805 (961)
.|++-|++|+..++.+. -+||..|.|+||| ....- ++.+++.. ..+.++|+++|+.+-+..+.++
T Consensus 32 ~~tpiQ~~Ai~~il~g~---nvli~APTGSGKT-----laa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~ 103 (876)
T PRK13767 32 TFTPPQRYAIPLIHEGK---NVLISSPTGSGKT-----LAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRN 103 (876)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEECCCCCcHH-----HHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHH
Confidence 58999999999998765 3799999999999 33222 23333321 1245799999999999988887
Q ss_pred HHh
Q 002130 806 LMK 808 (961)
Q Consensus 806 L~~ 808 (961)
|..
T Consensus 104 L~~ 106 (876)
T PRK13767 104 LEE 106 (876)
T ss_pred HHH
Confidence 654
No 97
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.54 E-value=0.00039 Score=85.60 Aligned_cols=129 Identities=13% Similarity=0.091 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHH-HHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREA-VLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVea-IlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
.|+..|+.||...+-... =+||.-|.|.||| .|+++ |++-+.. .+.+++..+|+++-|.+.++++.+ +.
T Consensus 31 el~~~qq~av~~~~~~~~--N~li~aPTgsGKT------lIA~lai~~~l~~-~~~k~vYivPlkALa~Ek~~~~~~-~~ 100 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDE--NVLISAPTGSGKT------LIALLAILSTLLE-GGGKVVYIVPLKALAEEKYEEFSR-LE 100 (766)
T ss_pred HhhHHHHHHhhccccCCC--cEEEEcCCCCchH------HHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHhhh-HH
Confidence 688999999998876522 3799999999999 34443 3333333 368999999999999999999972 10
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-ccCCCCCCccEEEEecCCCCCh
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~~~~~g~FdhVIIDEASQAtE 890 (961)
.--+|+.-..++. .. ..+.|.++.|||+|.-....+. +.......+++|||||+..+.+
T Consensus 101 -~~GirV~~~TgD~-----------------~~--~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 101 -ELGIRVGISTGDY-----------------DL--DDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred -hcCCEEEEecCCc-----------------cc--chhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCC
Confidence 0112332211111 11 1245788999999988775432 2222445799999999998887
Q ss_pred H
Q 002130 891 P 891 (961)
Q Consensus 891 P 891 (961)
.
T Consensus 161 ~ 161 (766)
T COG1204 161 R 161 (766)
T ss_pred c
Confidence 7
No 98
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00074 Score=79.65 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH-hCCCCe-EEEEecchHHHHHHHHHHHhhC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSR-ILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk-~~p~~R-ILVcAPSNsAaD~LleRL~~~l 810 (961)
...+-|.+|+-.+|.+++ ++++.+.|||||+ -.++-+|..+.. ...... .||.+||...|.++.+.+.+..
T Consensus 51 ~pt~IQ~~~IP~~l~g~D---vi~~A~TGsGKT~----Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~ 123 (513)
T COG0513 51 EPTPIQLAAIPLILAGRD---VLGQAQTGTGKTA----AFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLG 123 (513)
T ss_pred CCCHHHHHHHHHHhCCCC---EEEECCCCChHHH----HHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHH
Confidence 457889999999998863 6899999999992 223334444332 222222 8999999999999999887632
Q ss_pred C---CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhc-cceEEEEeeccchhh-hccCCCCCCccEEEEecC
Q 002130 811 P---ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELR-QYKVISSTFVSSFRL-HNQGITAGHFSHIFLIDA 885 (961)
Q Consensus 811 ~---~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~-~~rVVvtT~ssag~L-~~~~~~~g~FdhVIIDEA 885 (961)
. +..++-+.. .+...- +.+.|. ..+|||+|-.=.-.+ ....+.-.+..++|+|||
T Consensus 124 ~~~~~~~~~~i~G------G~~~~~--------------q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 124 KNLGGLRVAVVYG------GVSIRK--------------QIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred hhcCCccEEEEEC------CCCHHH--------------HHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 2 112111111 111110 111222 378999987533222 223355567999999999
Q ss_pred CCCChH
Q 002130 886 SSATEP 891 (961)
Q Consensus 886 SQAtEP 891 (961)
.++++.
T Consensus 184 DrmLd~ 189 (513)
T COG0513 184 DRMLDM 189 (513)
T ss_pred hhhhcC
Confidence 998776
No 99
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.51 E-value=0.00016 Score=93.09 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHHhh
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
++++|++||.. . ...++|.+.+||||| .||++.|++++... .-.+|||+|+||.||.++.+|+.+.
T Consensus 2 ~t~~Q~~ai~~----~-~~~~lv~A~AGsGKT-----~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 2 WTDEQWQAIYT----R-GQNILVSASAGSGKT-----AVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCHHHHHHHhC----C-CCCEEEEecCCCcHH-----HHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHH
Confidence 68999999973 1 225799999999999 99999998877643 2257999999999999999998873
No 100
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.50 E-value=0.00022 Score=86.09 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 737 DSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 737 eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
+|++.++.|... ......+|.+|.||||| ....-.++..+....+.+|||+|+|..-++++++.+.
T Consensus 1 ~Q~~~~~~i~~al~~~~~lliEA~TGtGKT-----lAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 1 EQALFYLNCLTSLRQKRIGMLEASTGVGKT-----LAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCCCcHH-----HHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHH
Confidence 477766666654 22346799999999999 3333333333332347899999999999999997544
No 101
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.00048 Score=80.34 Aligned_cols=133 Identities=17% Similarity=0.071 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHH-HHHHHHhCCCCeEEEEecchHHHHHHHHHHHh--hCC
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREA-VLQIRRRSPKSRILICAPWNRTCDKLMECLMK--DIP 811 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVea-IlQLlk~~p~~RILVcAPSNsAaD~LleRL~~--~l~ 811 (961)
-..|...+..+|... +||.=|.|=||| +|+.+ +...++..++ +||+.|||---|.+-++.+.+ .++
T Consensus 17 R~YQ~~i~a~al~~N----tLvvlPTGLGKT------~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 17 RLYQLNIAAKALFKN----TLVVLPTGLGKT------FIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred HHHHHHHHHHHhhcC----eEEEecCCccHH------HHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCC
Confidence 467888888888653 588999999999 34443 3435555555 999999999999999998887 344
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh-hhccCCCCCCccEEEEecCCCCCh
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHNQGITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~-L~~~~~~~g~FdhVIIDEASQAtE 890 (961)
..++.-+.. .++++-+. +.-.+.+|+++|.-.... +....+....|+|||+|||..|+-
T Consensus 86 ~~~i~~ltG------ev~p~~R~--------------~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvG 145 (542)
T COG1111 86 EDEIAALTG------EVRPEERE--------------ELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVG 145 (542)
T ss_pred hhheeeecC------CCChHHHH--------------HHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccC
Confidence 445444432 23333211 122567999999887754 333334556799999999999987
Q ss_pred HHHHHHHh
Q 002130 891 PETMIVLG 898 (961)
Q Consensus 891 PEaLIPLa 898 (961)
--+.+=++
T Consensus 146 nyAYv~Va 153 (542)
T COG1111 146 NYAYVFVA 153 (542)
T ss_pred cchHHHHH
Confidence 76666554
No 102
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.44 E-value=0.00065 Score=87.14 Aligned_cols=146 Identities=13% Similarity=0.085 Sum_probs=81.3
Q ss_pred HHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEe
Q 002130 738 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFR 817 (961)
Q Consensus 738 Qr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilR 817 (961)
.++.|..++... ..++|.|++|+||| +-|-.+++.+ ......+|.++-|-..||-.+++|+.+.+...---.
T Consensus 78 ~r~~Il~ai~~~--~VviI~GeTGSGKT-----TqlPq~lle~-g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~ 149 (1294)
T PRK11131 78 KKQDILEAIRDH--QVVIVAGETGSGKT-----TQLPKICLEL-GRGVKGLIGHTQPRRLAARTVANRIAEELETELGGC 149 (1294)
T ss_pred HHHHHHHHHHhC--CeEEEECCCCCCHH-----HHHHHHHHHc-CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcce
Confidence 445555555432 25789999999999 5444333321 111234677777999999999999988543210011
Q ss_pred cccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCC-CCChHHHHHH
Q 002130 818 ANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS-SATEPETMIV 896 (961)
Q Consensus 818 V~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEAS-QAtEPEaLIP 896 (961)
+|..-| |.. ..-.+.+|+++|-...-.....+..-..+++||||||. ...+.+.++.
T Consensus 150 VGY~vr-------------------f~~---~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg 207 (1294)
T PRK11131 150 VGYKVR-------------------FND---QVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILG 207 (1294)
T ss_pred eceeec-------------------Ccc---ccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHH
Confidence 121111 000 00134678888865443332323234579999999998 3666555443
Q ss_pred -Hhcccc--CCCeEEEEeCC
Q 002130 897 -LGNLAN--ENTRVIVTGAP 913 (961)
Q Consensus 897 -La~LA~--~~trVVLaGDp 913 (961)
|..+.. +..|+|+..-.
T Consensus 208 ~Lk~lL~~rpdlKvILmSAT 227 (1294)
T PRK11131 208 YLKELLPRRPDLKVIITSAT 227 (1294)
T ss_pred HHHHhhhcCCCceEEEeeCC
Confidence 221221 24577776543
No 103
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.44 E-value=0.001 Score=83.55 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|-+.|..++..++.... +-+||-=.-|.||| ...+.++.+++......||||++|..- +.+=...+.+.+.
T Consensus 151 ~~l~pHQl~~~~~vl~~~~-~R~LLADEvGLGKT-----IeAglil~~l~~~g~~~rvLIVvP~sL-~~QW~~El~~kF~ 223 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHA-PRVLLADEVGLGKT-----IEAGMIIHQQLLTGRAERVLILVPETL-QHQWLVEMLRRFN 223 (956)
T ss_pred CCCCHHHHHHHHHHhhccC-CCEEEEeCCcCcHH-----HHHHHHHHHHHHcCCCCcEEEEcCHHH-HHHHHHHHHHHhC
Confidence 5688999999999887542 33688889999999 444444555555545579999999743 4444444443221
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhh--hccCCCCCCccEEEEecCCCCC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL--HNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L--~~~~~~~g~FdhVIIDEASQAt 889 (961)
.. +.+....|. ..+..... +.+...++|+|+......- ....+....||+||||||.++.
T Consensus 224 -l~-~~i~~~~~~--------~~~~~~~~--------~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk 285 (956)
T PRK04914 224 -LR-FSLFDEERY--------AEAQHDAD--------NPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLV 285 (956)
T ss_pred -CC-eEEEcCcch--------hhhccccc--------CccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhc
Confidence 11 122221110 00000001 1123567888877654320 1112344589999999998874
Q ss_pred ----hHH-HHHHHhcccc-CCCeEEEEeCCCCCCcc
Q 002130 890 ----EPE-TMIVLGNLAN-ENTRVIVTGAPHNSPSR 919 (961)
Q Consensus 890 ----EPE-aLIPLa~LA~-~~trVVLaGDpkQLpPv 919 (961)
.+. ..--+..++. ...++.|.|=|.|+++.
T Consensus 286 ~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~ 321 (956)
T PRK04914 286 WSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQE 321 (956)
T ss_pred cCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcH
Confidence 121 1222222332 34689999999998763
No 104
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=97.38 E-value=0.001 Score=81.00 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=88.9
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
+..|-..|.+-|+-+| +. -+||.-|.|.||| ...+.+++..++-.+..+|++.||+---+..-..++...+
T Consensus 60 ~~~lR~YQ~eivq~AL-gk---Ntii~lPTG~GKT-----fIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GK---NTIIALPTGSGKT-----FIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred cccccHHHHHHhHHhh-cC---CeEEEeecCCCcc-----chHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhcc
Confidence 3467899999999999 54 3699999999999 7777777778888889999999999888877775554422
Q ss_pred CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh-hhccCCCC-CCccEEEEecCCCC
Q 002130 811 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHNQGITA-GHFSHIFLIDASSA 888 (961)
Q Consensus 811 ~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~-L~~~~~~~-g~FdhVIIDEASQA 888 (961)
.+ .++.... -+.++ .....++....+|+++|+-.... |....... ..|.+||||||..+
T Consensus 131 ~~---~~~T~~l--~~~~~--------------~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra 191 (746)
T KOG0354|consen 131 IP---YSVTGQL--GDTVP--------------RSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRT 191 (746)
T ss_pred Cc---ccceeec--cCccC--------------CCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccc
Confidence 11 1111100 00011 11112344677999999976643 22222233 56999999999887
Q ss_pred ChH
Q 002130 889 TEP 891 (961)
Q Consensus 889 tEP 891 (961)
+-=
T Consensus 192 ~kn 194 (746)
T KOG0354|consen 192 SKN 194 (746)
T ss_pred ccc
Confidence 643
No 105
>PRK09694 helicase Cas3; Provisional
Probab=97.30 E-value=0.001 Score=83.04 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
...++-|+.+.... ..+..++|.+|.|.||| .....++.+++......+|+++.||-..+|.+.+|+.+
T Consensus 285 ~~p~p~Q~~~~~~~---~~pgl~ileApTGsGKT-----EAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 285 YQPRQLQTLVDALP---LQPGLTIIEAPTGSGKT-----EAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCChHHHHHHHhhc---cCCCeEEEEeCCCCCHH-----HHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHH
Confidence 45788898774332 13457899999999999 55555555556554567999999999999999999975
No 106
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.29 E-value=0.0003 Score=66.04 Aligned_cols=52 Identities=13% Similarity=0.261 Sum_probs=32.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh----CCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----SPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~----~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..+|+|++|+||| +++...+.++... ....-|.+.++.......+...+.+.
T Consensus 6 ~~~i~G~~G~GKT-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 61 (131)
T PF13401_consen 6 ILVISGPPGSGKT-----TLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEA 61 (131)
T ss_dssp -EEEEE-TTSSHH-----HHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHH-----HHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5799999999999 6665555554432 12333455555555577777777763
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.00079 Score=79.50 Aligned_cols=143 Identities=13% Similarity=0.185 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHhccCC-CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCC
Q 002130 735 DSDSNSAVHQILSFEGQ-SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPAS 813 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~-~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~ 813 (961)
++.-.+++.+++...+. ..+|++||+||||| |++.++...+....+...--|.. + ..|..+... ...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKT------t~A~~lAk~l~c~~~~~~~pCg~----C-~~C~~i~~g-~~~ 88 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKT------TISRILAKCLNCEKGVSANPCND----C-ENCREIDEG-RFP 88 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHH------HHHHHHHHHhcCCCCCCcccCCC----C-HHHHHHhcC-CCc
Confidence 45555666666654332 34799999999999 66777666554322211111211 1 123344321 122
Q ss_pred ceEeccccc-ccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHH
Q 002130 814 EMFRANAAF-READGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPE 892 (961)
Q Consensus 814 ~ilRV~a~s-R~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPE 892 (961)
+++.+.+.. +.++.+.+ +.. ... ..-..+.|.++|||||..++. +
T Consensus 89 d~~eidaas~~~v~~iR~-l~~------------------~~~--------------~~p~~~~~kV~iIDE~~~ls~-~ 134 (509)
T PRK14958 89 DLFEVDAASRTKVEDTRE-LLD------------------NIP--------------YAPTKGRFKVYLIDEVHMLSG-H 134 (509)
T ss_pred eEEEEcccccCCHHHHHH-HHH------------------HHh--------------hccccCCcEEEEEEChHhcCH-H
Confidence 466665432 11211111 110 000 001235789999999976554 4
Q ss_pred HHHHHhcccc---CCCeEEEE-eCCCCCCccccCh
Q 002130 893 TMIVLGNLAN---ENTRVIVT-GAPHNSPSRVRSD 923 (961)
Q Consensus 893 aLIPLa~LA~---~~trVVLa-GDpkQLpPvV~S~ 923 (961)
+.-.|..... ....+||+ .|+..+++.|.|.
T Consensus 135 a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR 169 (509)
T PRK14958 135 SFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR 169 (509)
T ss_pred HHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH
Confidence 4333332221 35677775 6889999888765
No 108
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.001 Score=72.82 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
..+|..|..|+..+-.- ....-++|+|||||||| ..+..+..++++. +.+|+.+. +..++..|.
T Consensus 86 ~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKT-----HLa~Aia~~a~~~--g~~v~f~~-----~~~L~~~l~ 150 (269)
T PRK08181 86 PMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKS-----HLAAAIGLALIEN--GWRVLFTR-----TTDLVQKLQ 150 (269)
T ss_pred CCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHH-----HHHHHHHHHHHHc--CCceeeee-----HHHHHHHHH
Confidence 56899999998755211 11123799999999999 5444444445543 67777664 244555554
No 109
>KOG4284 consensus DEAD box protein [Transcription]
Probab=97.26 E-value=0.00018 Score=85.38 Aligned_cols=135 Identities=18% Similarity=0.131 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCc
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASE 814 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ 814 (961)
.+-|..||-.++..-+ .|||.--||||||.+ .+.++-.+.-+.....++|++||..-|-.|-+-+.+..+..+
T Consensus 49 tkiQaaAIP~~~~kmD---liVQaKSGTGKTlVf----sv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~ 121 (980)
T KOG4284|consen 49 TKIQAAAIPAIFSKMD---LIVQAKSGTGKTLVF----SVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFT 121 (980)
T ss_pred Cchhhhhhhhhhcccc---eEEEecCCCCceEEE----EeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhccccc
Confidence 4568899988887643 699999999999432 112222233333456899999999888888777765322111
Q ss_pred eEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccC-CCCCCccEEEEecCCCCChHHH
Q 002130 815 MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHIFLIDASSATEPET 893 (961)
Q Consensus 815 ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~-~~~g~FdhVIIDEASQAtEPEa 893 (961)
-+|-... + ++.-....+..|.+.||||+|..-...|..++ +..++.++.|+|||-|.++-+.
T Consensus 122 g~~csvf---I--------------GGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~s 184 (980)
T KOG4284|consen 122 GARCSVF---I--------------GGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTES 184 (980)
T ss_pred CcceEEE---e--------------cCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhh
Confidence 1111110 1 11111112345678999999987666555444 5678999999999999998554
No 110
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.26 E-value=0.00089 Score=80.37 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..+.+.|++|+..++.++ -++|.+|.|+||| .+ ..+-.++. +..+||.+|+.+-+....+++..
T Consensus 24 ~~~r~~Q~~ai~~il~g~---dvlv~apTGsGKT-----l~--y~lpal~~---~g~tlVisPl~sL~~dqv~~l~~ 87 (607)
T PRK11057 24 QQFRPGQQEIIDAVLSGR---DCLVVMPTGGGKS-----LC--YQIPALVL---DGLTLVVSPLISLMKDQVDQLLA 87 (607)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCchHH-----HH--HHHHHHHc---CCCEEEEecHHHHHHHHHHHHHH
Confidence 367899999999999875 3689999999999 22 22322332 45799999999988888888865
No 111
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.00077 Score=79.09 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=30.3
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccc-c--CCCeEEEEeC-CCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLA-N--ENTRVIVTGA-PHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA-~--~~trVVLaGD-pkQLpPvV~S~ 923 (961)
+.+.++|||||...+ .+++-.|.... . ....+||+.. +.+|.|.|.|.
T Consensus 120 g~~KV~IIDEah~Ls-~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 120 GKYKVYIIDEVHMLT-DQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR 171 (484)
T ss_pred CCCEEEEEechhhcC-HHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh
Confidence 468899999996555 44444443222 2 2345566554 58888888876
No 112
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.22 E-value=0.0016 Score=85.11 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCC-CCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLC-NNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPG-TGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleR 805 (961)
.+|..|..||..||..+. ...+|.|.-| |||| ++|. .+..+.+. .+.+|.+.||++.|+..|.+.
T Consensus 281 ~~~~~q~~Av~~il~dr~-~v~iv~~~GgAtGKt-----t~l~-~l~~~a~~-~G~~V~~lApt~~a~~~L~e~ 346 (1623)
T PRK14712 281 PRTAGYSDAVSVLAQDRP-SLAIVSGQGGAAGQR-----ERVA-ELVMMARE-QGREVQIIAADRRSQMNLKQD 346 (1623)
T ss_pred ccchhHHHHHHHHhcCCC-ceEEEEecccccccH-----HHHH-HHHHHHHh-CCcEEEEEeCCHHHHHHHHhc
Confidence 367899999999996542 2334444444 9999 6666 44455554 699999999999999888765
No 113
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.00056 Score=80.06 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHhccCCC-CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQS-PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~-P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.+.-.+.+..++.....+ .+|++|||||||| |+|.++++.+.
T Consensus 19 q~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKT------TlA~~lA~~l~ 61 (472)
T PRK14962 19 QDHVKKLIINALKKNSISHAYIFAGPRGTGKT------TVARILAKSLN 61 (472)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 344455555555543332 3799999999999 77777776654
No 114
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.17 E-value=0.0032 Score=68.65 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
-+++..+.+..++.....+.++|+|||||||| +++.++...+
T Consensus 19 g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT------~la~~~~~~l 60 (337)
T PRK12402 19 GQDEVVERLSRAVDSPNLPHLLVQGPPGSGKT------AAVRALAREL 60 (337)
T ss_pred CCHHHHHHHHHHHhCCCCceEEEECCCCCCHH------HHHHHHHHHh
Confidence 36777777877776654457899999999999 5555554444
No 115
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.16 E-value=0.0016 Score=77.58 Aligned_cols=127 Identities=9% Similarity=-0.003 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..+++.|++|+..++.+.+ ++|..|.|+||| .. ..+-.++. +..++|.+|+.+-+...+++|...
T Consensus 12 ~~fr~~Q~~~i~~il~g~d---vlv~~PTG~GKT-----l~--y~lpal~~---~g~~lVisPl~sL~~dq~~~l~~~-- 76 (591)
T TIGR01389 12 DDFRPGQEEIISHVLDGRD---VLVVMPTGGGKS-----LC--YQVPALLL---KGLTVVISPLISLMKDQVDQLRAA-- 76 (591)
T ss_pred CCCCHHHHHHHHHHHcCCC---EEEEcCCCccHh-----HH--HHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHc--
Confidence 4689999999999998763 699999999999 22 22222222 456888999998888777887652
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh-hhccCCCCCCccEEEEecCCCC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~-L~~~~~~~g~FdhVIIDEASQA 888 (961)
+..+..++.. +..+-.. ..+. . -.....+|+++|...... .....+....+++||||||...
T Consensus 77 gi~~~~~~s~------~~~~~~~-~~~~-~-------l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i 139 (591)
T TIGR01389 77 GVAAAYLNST------LSAKEQQ-DIEK-A-------LVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCV 139 (591)
T ss_pred CCcEEEEeCC------CCHHHHH-HHHH-H-------HhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccc
Confidence 2333333321 1111000 0000 0 001345777776543321 0111123457899999999654
No 116
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.15 E-value=0.0021 Score=67.99 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 735 N~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
...+++|+..+... .+.+.++|.||+|+||| |++..+...+
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKT------tl~~~l~~~l 67 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKT------TLIRNLLKRL 67 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHH------HHHHHHHHhc
Confidence 56667777765432 23446899999999999 5555544433
No 117
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.14 E-value=0.0016 Score=78.34 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHhcc-C--CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFE-G--QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~-~--~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|+..|++++..|+..- . +.--||||-=|+||| .+.+-++++.+.. |..+.+.|||-.-|.+-.+.+.+
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKT-----vVA~laml~ai~~--G~Q~ALMAPTEILA~QH~~~~~~ 333 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKT-----VVALLAMLAAIEA--GYQAALMAPTEILAEQHYESLRK 333 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHH-----HHHHHHHHHHHHc--CCeeEEeccHHHHHHHHHHHHHH
Confidence 579999999999999752 1 122389999999999 7777777777775 88999999999999999999988
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEAS 886 (961)
.+.... +|+..-. ..+...-++... +.. .-.+..|||+|-.-. +..+.....-+|||||=.
T Consensus 334 ~l~~~~-i~V~lLt---G~~kgk~r~~~l--~~l-------~~G~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQH 394 (677)
T COG1200 334 WLEPLG-IRVALLT---GSLKGKARKEIL--EQL-------ASGEIDIVVGTHALI----QDKVEFHNLGLVIIDEQH 394 (677)
T ss_pred HhhhcC-CeEEEee---cccchhHHHHHH--HHH-------hCCCCCEEEEcchhh----hcceeecceeEEEEeccc
Confidence 665433 4543211 111111111000 000 014678999987643 333334456789999953
No 118
>PRK06526 transposase; Provisional
Probab=97.11 E-value=0.0018 Score=70.13 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 791 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV 791 (961)
..+|..|...+...---....-++|+|||||||| ++.+.+..++++. +.+|+.
T Consensus 79 ~~~~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKT-----hLa~al~~~a~~~--g~~v~f 131 (254)
T PRK06526 79 RSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKT-----HLAIGLGIRACQA--GHRVLF 131 (254)
T ss_pred CCcchHHHHHHhcCchhhcCceEEEEeCCCCchH-----HHHHHHHHHHHHC--CCchhh
Confidence 4677776655432100012234799999999999 5555555555543 667665
No 119
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0033 Score=67.74 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=33.1
Q ss_pred CCCccEEEEecCCCCChHHHHHHHhcc---ccCCCeEEEEeC-CCCCCccccCh
Q 002130 874 AGHFSHIFLIDASSATEPETMIVLGNL---ANENTRVIVTGA-PHNSPSRVRSD 923 (961)
Q Consensus 874 ~g~FdhVIIDEASQAtEPEaLIPLa~L---A~~~trVVLaGD-pkQLpPvV~S~ 923 (961)
.+.+.+||||||-.+++- +.-.|... -...+.+||+=+ +..+-|.++|.
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n~~~~il~tI~SR 159 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITNDPSKILPTIRSR 159 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcCChhhccchhhhc
Confidence 367899999999777763 22222211 235678888776 78888888775
No 120
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.08 E-value=0.0013 Score=77.71 Aligned_cols=137 Identities=12% Similarity=-0.014 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHH--HHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVL--QIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIl--QLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
...+-|.++.-.+|.+++ ++...--|+||||+.+-=.|+.+.. +.+....+.+|||.+||...|..+.+-..+..
T Consensus 113 ~PtpIQaq~wp~~l~GrD---~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~ 189 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALSGRD---LVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFG 189 (519)
T ss_pred CCchhhhcccceeccCCc---eEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHc
Confidence 456778888878887763 4778899999996543333333332 11122346789999999999999998887643
Q ss_pred CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhc-cceEEEEeeccchhhhc-cCCCCCCccEEEEecCCCC
Q 002130 811 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELR-QYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 811 ~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~-~~rVVvtT~ssag~L~~-~~~~~g~FdhVIIDEASQA 888 (961)
.... + +-.|.+ ++.-.-++...|. .+.|||+|-.=.-.+.. ..+.-..++|+++|||-++
T Consensus 190 ~~~~-~----------------~~~cvy-GG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 190 KSLR-L----------------RSTCVY-GGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred CCCC-c----------------cEEEEe-CCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 3222 1 111221 1222234444454 48999998753322222 2233457999999999887
Q ss_pred Ch
Q 002130 889 TE 890 (961)
Q Consensus 889 tE 890 (961)
+.
T Consensus 252 ld 253 (519)
T KOG0331|consen 252 LD 253 (519)
T ss_pred hc
Confidence 63
No 121
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.07 E-value=0.0037 Score=70.45 Aligned_cols=63 Identities=8% Similarity=0.012 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 737 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 737 eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
.|.+|+..+..+. ...++|.+|+|+||| .... +.++. .+.+.++.+|+++.++...+++.+.+
T Consensus 1 hQ~~~~~~~~~~~-~~~~~i~apTGsGKT-----~~~~---~~~l~--~~~~~~~~~P~~aL~~~~~~~~~~~~ 63 (357)
T TIGR03158 1 HQVATFEALQSKD-ADIIFNTAPTGAGKT-----LAWL---TPLLH--GENDTIALYPTNALIEDQTEAIKEFV 63 (357)
T ss_pred CHHHHHHHHHcCC-CCEEEEECCCCCCHH-----HHHH---HHHHH--cCCCEEEEeChHHHHHHHHHHHHHHH
Confidence 3899999988764 235789999999999 3222 22233 25578999999999999999988743
No 122
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.002 Score=78.21 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=30.0
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccc-cC--CCeEEEE-eCCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLA-NE--NTRVIVT-GAPHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA-~~--~trVVLa-GDpkQLpPvV~S~ 923 (961)
|.|.++|||||..++. ++.=.|.... .. ..++||+ =|+..|.++|+|.
T Consensus 118 g~~KV~IIDEah~Ls~-~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR 169 (647)
T PRK07994 118 GRFKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 (647)
T ss_pred CCCEEEEEechHhCCH-HHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh
Confidence 5789999999966554 4444442222 22 2344443 3778888888875
No 123
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.04 E-value=0.0018 Score=72.58 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhc----cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCC-eEEEEecchHHHHHHHHHHHhh
Q 002130 736 SDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS-RILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 736 ~eQr~AV~~ILs~----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~-RILVcAPSNsAaD~LleRL~~~ 809 (961)
+.|.+.+...+.. .....++|+|||||||| +++-.++.++.....+. -|-|.+........++.++...
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT-----~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKT-----TTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHH-----HHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 5566666666632 22345799999999999 55444444443332122 2333344333344455555543
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.03 E-value=0.0021 Score=80.03 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 734 LN~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleR 805 (961)
..+.|.+.+..|... ......+|..|.|||||+ +. ++-++. ... .+.+|+|+|+|..-.++++.+
T Consensus 246 ~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~---ay-Llp~~~-~~~--~~~~vvi~t~t~~Lq~Ql~~~ 311 (850)
T TIGR01407 246 YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTL---GY-LLPALY-YAI--TEKPVVISTNTKVLQSQLLEK 311 (850)
T ss_pred cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhH---HH-HHHHHH-Hhc--CCCeEEEEeCcHHHHHHHHHH
Confidence 457899755544432 112357899999999992 11 222222 222 477999999999988888764
No 125
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.03 E-value=0.0023 Score=74.22 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHH-HHHHhCCCCeEEEEec
Q 002130 735 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVL-QIRRRSPKSRILICAP 794 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIl-QLlk~~p~~RILVcAP 794 (961)
|..-..|+..+....+ ..|++|+||+|+||| .|+.+|. ++.+..++.+|+.++.
T Consensus 113 n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKT------HLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 113 NSFAYHAALEVAKNPGRYNPLFIYGGVGLGKT------HLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred hHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHH------HHHHHHHHHHHHhCCCCeEEEEEH
Confidence 3433344444443332 247899999999999 4445554 4555556778887753
No 126
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.02 E-value=0.001 Score=82.42 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHHh
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..+.|++++..++.+.. +.+++.|.||||| .+++..++.+.... ...++++|+|+..-|+++.+.+.+
T Consensus 16 PtpiQ~~~i~~il~G~~--~v~~~apTGSGKT-----aa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQP--PESCSTPTGLGKT-----SIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred CCHHHHHHHHHHHcCCC--cceEecCCCCccc-----HHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH
Confidence 68899999999997653 4688999999999 44432122221111 233666688999999999988776
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.01 E-value=0.002 Score=80.04 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=44.2
Q ss_pred CCCHHHHH---HHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHH
Q 002130 733 KLDSDSNS---AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 733 ~LN~eQr~---AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleR 805 (961)
...++|.+ +|...+... ...+|+.++||||| ++..+. ++ + . ..+.+|+|.|+|..-+++++.+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~--~~~~~eA~tGtGKT---~ayllp-~l-~--~-~~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDG--PASFIEAQTGIGKT---YGYLLP-LL-A--Q-SDQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCC--CcEEEECCCCCcHH---HHHHHH-HH-H--h-cCCCcEEEEeCcHHHHHHHHHH
Confidence 34688888 666666543 36799999999999 222222 22 1 1 2478999999999999999643
No 128
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.003 Score=78.51 Aligned_cols=121 Identities=10% Similarity=0.043 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceE
Q 002130 737 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMF 816 (961)
Q Consensus 737 eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~il 816 (961)
..+..+..++... ..++|.|++|.||| +-|-..+++... ..+.+|.++=|=..||-.+++|+.+.+...---
T Consensus 53 ~~~~~i~~ai~~~--~vvii~getGsGKT-----TqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 53 AVRDEILKAIEQN--QVVIIVGETGSGKT-----TQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHhC--CEEEEeCCCCCChH-----HHHHHHHHhhhc-ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 4566666666543 35799999999999 555555444332 235688888899999999999999866542222
Q ss_pred ecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCC
Q 002130 817 RANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 887 (961)
Q Consensus 817 RV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQ 887 (961)
-||+.-|..+.+. .+-+|-+.|-...-+....+..-.++++||||||..
T Consensus 125 ~VGY~iRfe~~~s----------------------~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHE 173 (845)
T COG1643 125 TVGYSIRFESKVS----------------------PRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHE 173 (845)
T ss_pred eeeEEEEeeccCC----------------------CCceeEEeccHHHHHHHhhCcccccCCEEEEcchhh
Confidence 2333333222221 233454544433333223233345799999999953
No 129
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.98 E-value=0.0021 Score=78.21 Aligned_cols=105 Identities=14% Similarity=0.094 Sum_probs=74.7
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIF 833 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I~ 833 (961)
.++.|.+|.||| .+.+++|.+.+.. +..+||..|...-+..+.+||.+.++...+..+.+. +.+. .
T Consensus 163 ~i~~~~~GSGKT-----evyl~~i~~~l~~--Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~------l~~~-~ 228 (665)
T PRK14873 163 AVWQALPGEDWA-----RRLAAAAAATLRA--GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAG------LGPA-D 228 (665)
T ss_pred HHhhcCCCCcHH-----HHHHHHHHHHHHc--CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCC------CCHH-H
Confidence 356666799999 9999999998886 888999999999999999999988765667776653 1111 1
Q ss_pred HhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCC
Q 002130 834 QVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 834 ~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEAS 886 (961)
+|..|.. -.-.+.+|||+|.++.... -.....|||||=+
T Consensus 229 R~~~w~~--------~~~G~~~IViGtRSAvFaP------~~~LgLIIvdEEh 267 (665)
T PRK14873 229 RYRRWLA--------VLRGQARVVVGTRSAVFAP------VEDLGLVAIWDDG 267 (665)
T ss_pred HHHHHHH--------HhCCCCcEEEEcceeEEec------cCCCCEEEEEcCC
Confidence 2222211 0115679999999987542 2234568998753
No 130
>PRK14974 cell division protein FtsY; Provisional
Probab=96.96 E-value=0.0068 Score=68.43 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=29.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe-cc--hHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA-PW--NRTCDKL 802 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA-PS--NsAaD~L 802 (961)
.+++.|++|+||| +|++.++..+.. .+.+|++++ .+ ..|++.+
T Consensus 142 vi~~~G~~GvGKT-----TtiakLA~~l~~--~g~~V~li~~Dt~R~~a~eqL 187 (336)
T PRK14974 142 VIVFVGVNGTGKT-----TTIAKLAYYLKK--NGFSVVIAAGDTFRAGAIEQL 187 (336)
T ss_pred EEEEEcCCCCCHH-----HHHHHHHHHHHH--cCCeEEEecCCcCcHHHHHHH
Confidence 5678999999999 888877765544 356775543 33 3444544
No 131
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.002 Score=78.03 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=32.8
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcccc---CCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~---~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+.|.+||||||.+++. ++.-.|..... ....+||+. |+.+|.|.|+|.
T Consensus 123 gr~KViIIDEah~Ls~-~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR 174 (700)
T PRK12323 123 GRFKVYMIDEVHMLTN-HAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 174 (700)
T ss_pred CCceEEEEEChHhcCH-HHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH
Confidence 5789999999976654 44444432221 346777766 578899999886
No 132
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=96.93 E-value=0.0048 Score=78.28 Aligned_cols=161 Identities=12% Similarity=0.144 Sum_probs=97.9
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|=+.|.++|..++.. .+. -.||-=..|.||| ...+.++..+... ....++||++|... +++-...+.+
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~-gGILADEMGLGKT-----lQaIalL~~L~~~~~~~gp~LIVvP~Sl-L~nW~~Ei~k 240 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGI-NGILADEMGLGKT-----LQTISLLGYLHEYRGITGPHMVVAPKST-LGNWMNEIRR 240 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCC-CEEEEeCCCccHH-----HHHHHHHHHHHHhcCCCCCEEEEeChHH-HHHHHHHHHH
Confidence 36788999999988753 111 1367778999999 5555555544432 23458999999644 5666666666
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQA 888 (961)
..+...++.+....+.. ..+.. ..+ ...++.||++|..++..-. ..+....|++||||||..+
T Consensus 241 w~p~l~v~~~~G~~~eR----~~~~~------~~~------~~~~~dVvITSYe~l~~e~-~~L~k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 241 FCPVLRAVKFHGNPEER----AHQRE------ELL------VAGKFDVCVTSFEMAIKEK-TALKRFSWRYIIIDEAHRI 303 (1033)
T ss_pred HCCCCceEEEeCCHHHH----HHHHH------HHh------cccCCCcceecHHHHHHHH-HHhccCCCCEEEEcCcccc
Confidence 55555555544321110 00010 000 0135789998887664321 1234457999999999888
Q ss_pred ChHHHHHHHhc-cccCCCeEEEEeCCCCC
Q 002130 889 TEPETMIVLGN-LANENTRVIVTGAPHNS 916 (961)
Q Consensus 889 tEPEaLIPLa~-LA~~~trVVLaGDpkQL 916 (961)
-.+.+.+.-+. ......+++|.|=|-|-
T Consensus 304 KN~~Sklskalr~L~a~~RLLLTGTPlqN 332 (1033)
T PLN03142 304 KNENSLLSKTMRLFSTNYRLLITGTPLQN 332 (1033)
T ss_pred CCHHHHHHHHHHHhhcCcEEEEecCCCCC
Confidence 77765443221 11356799999999883
No 133
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.90 E-value=0.0048 Score=77.74 Aligned_cols=64 Identities=13% Similarity=0.050 Sum_probs=45.0
Q ss_pred CCHHHHH---HHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHH
Q 002130 734 LDSDSNS---AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 734 LN~eQr~---AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleR 805 (961)
.-+.|.+ +|...+... ...+|..|.||||| .|+.| -++.... ..+.+|+|+|+|..--+.|+.+
T Consensus 258 ~R~~Q~~m~~~v~~~l~~~--~~~~iEA~TGtGKT---laYLl-pa~~~a~--~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 258 KREGQQEMMKEVYTALRDS--EHALIEAGTGTGKS---LAYLL-PAAYFAK--KKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred CCHHHHHHHHHHHHHHhcC--CCEEEECCCCCchh---HHHHH-HHHHHhh--ccCCeEEEEcCCHHHHHHHHHh
Confidence 3577888 555555443 35789999999999 33332 2333222 2479999999999999999875
No 134
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.89 E-value=0.0028 Score=79.03 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHH-HHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAV-LQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaI-lQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
+.+.|.+++-.++...+ .+.+.+.||||| .+.+-.+ ..++. +..++|+|+|.--|....+-+......
T Consensus 93 ~tp~qvQ~I~~i~l~~g---vIAeaqTGeGKT-----LAf~LP~l~~aL~---g~~v~IVTpTrELA~Qdae~m~~L~k~ 161 (970)
T PRK12899 93 MVPYDVQILGAIAMHKG---FITEMQTGEGKT-----LTAVMPLYLNALT---GKPVHLVTVNDYLAQRDCEWVGSVLRW 161 (970)
T ss_pred CChHHHHHhhhhhcCCC---eEEEeCCCCChH-----HHHHHHHHHHHhh---cCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 78899999988887764 689999999999 3333222 23332 446899999988877777666542110
Q ss_pred CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh--hhccCCC-------CCCccEEEEe
Q 002130 813 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHNQGIT-------AGHFSHIFLI 883 (961)
Q Consensus 813 ~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~~~~~-------~g~FdhVIID 883 (961)
.. ++++.- ....+.+-+ .+. ..+.||++|..-.|. +....+. ...|.++|||
T Consensus 162 lG-LsV~~i---~GG~~~~eq--------------~~~-y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IID 222 (970)
T PRK12899 162 LG-LTTGVL---VSGSPLEKR--------------KEI-YQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIID 222 (970)
T ss_pred cC-CeEEEE---eCCCCHHHH--------------HHH-cCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEe
Confidence 00 222110 011111100 011 246899999876632 2221111 2368899999
Q ss_pred cCCCCChHHHHHHHhccccCCCeEEEEeCCCCC
Q 002130 884 DASSATEPETMIVLGNLANENTRVIVTGAPHNS 916 (961)
Q Consensus 884 EASQAtEPEaLIPLa~LA~~~trVVLaGDpkQL 916 (961)
||-.++.-|+- +-+|+.|-...-
T Consensus 223 EADsmLiDEAr----------TPLIISg~~~~~ 245 (970)
T PRK12899 223 EVDSILIDEAR----------TPLIISGPGEKH 245 (970)
T ss_pred chhhhhhhccC----------CceeeeCCCccc
Confidence 99887766654 445566655443
No 135
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.0014 Score=81.49 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=30.0
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcccc---CCCeEEEE-eCCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVT-GAPHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~---~~trVVLa-GDpkQLpPvV~S~ 923 (961)
|.|.++|||||..+ ..+++-.|..... ...++||+ .|...|.+.|+|.
T Consensus 118 gk~KViIIDEAh~L-T~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR 169 (944)
T PRK14949 118 GRFKVYLIDEVHML-SRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR 169 (944)
T ss_pred CCcEEEEEechHhc-CHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh
Confidence 57899999999555 4554444432222 23455554 4677788888774
No 136
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.002 Score=78.21 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCC
Q 002130 735 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPAS 813 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~ 813 (961)
++.-.+++.+++...+ ...+|++||+||||| |++.+++..+....+.....|. .. ..|.++... ...
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKT------TlAriLAK~LnC~~~~~~~pCg-~C----~sC~~I~~g-~hp 87 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKT------TIARILAKCLNCETGVTSTPCE-VC----ATCKAVNEG-RFI 87 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHhCCCcCCCCCCCc-cC----HHHHHHhcC-CCC
Confidence 4444556666665432 346799999999999 6666665554332121212221 11 123344321 123
Q ss_pred ceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHH
Q 002130 814 EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPET 893 (961)
Q Consensus 814 ~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEa 893 (961)
+++.+++..+. .+ ++++..... ..+ .-..+.+.++|||||..++. ++
T Consensus 88 DviEIDAAs~~--~V-ddIReli~~--~~y---------------------------~P~~gk~KV~IIDEVh~LS~-~A 134 (702)
T PRK14960 88 DLIEIDAASRT--KV-EDTRELLDN--VPY---------------------------APTQGRFKVYLIDEVHMLST-HS 134 (702)
T ss_pred ceEEecccccC--CH-HHHHHHHHH--Hhh---------------------------hhhcCCcEEEEEechHhcCH-HH
Confidence 56666654321 11 122211100 000 00124678999999966543 33
Q ss_pred HHHHhccc-c--CCCeEEEEe-CCCCCCccccCh
Q 002130 894 MIVLGNLA-N--ENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 894 LIPLa~LA-~--~~trVVLaG-DpkQLpPvV~S~ 923 (961)
.-.|.... . ....+||+. |+..+++.++|.
T Consensus 135 ~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSR 168 (702)
T PRK14960 135 FNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 (702)
T ss_pred HHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHh
Confidence 33333222 2 345788866 667777776643
No 137
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.0054 Score=72.89 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=30.7
Q ss_pred CCccEEEEecCCCCChHHHHHHHhc-ccc--CCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGN-LAN--ENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~-LA~--~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+.|.++|||||..++. ++.=.|.. +-. ....+||+. |+..+.+.|.|.
T Consensus 118 ~~~kVvIIDEad~ls~-~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SR 169 (527)
T PRK14969 118 GRFKVYIIDEVHMLSK-SAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 (527)
T ss_pred CCceEEEEcCcccCCH-HHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHH
Confidence 5688999999976654 33322221 222 346788877 777888777654
No 138
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.83 E-value=0.0069 Score=80.21 Aligned_cols=126 Identities=14% Similarity=0.073 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCc
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASE 814 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ 814 (961)
+..|+.||..++... ....+|.|+-|.+.| .+++..+..+++. .+.+|.+.||++.|++.|.+.. .+....
T Consensus 415 ~~~~~~av~~~~q~~-~~~~il~g~~G~aG~-----g~~l~~l~~~a~~-~G~~V~glAPt~~a~~~L~~~~--gi~~~T 485 (1747)
T PRK13709 415 TAGYSDAVSVLAQDR-PSLAIVSGQGGAAGQ-----RERVAELVMMARE-QGREVQILAADRRSQMNLKQDE--RLSGEL 485 (1747)
T ss_pred chhhhHHHHHHhccc-CcEEEEEcCCcchHH-----HHHHHHHHHHHHh-CCcEEEEEeCcHHHHHHHHHhc--CCCcce
Confidence 568999999988764 335688888885333 2344555556654 6889999999999999887653 121111
Q ss_pred eEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHH
Q 002130 815 MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETM 894 (961)
Q Consensus 815 ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaL 894 (961)
+-+. .++ . .. ..+. .=+++|||||++..--+.+
T Consensus 486 va~~------------~~l------------------~-----------~~----~~~~--~~~ilIVDEAg~lsar~m~ 518 (1747)
T PRK13709 486 ITGR------------RQL------------------Q-----------EG----MAFT--PGSTLIVDQAEKLSLKETL 518 (1747)
T ss_pred eehh------------hhh------------------c-----------cc----cCCC--CCcEEEEECCCcCCHHHHH
Confidence 1110 000 0 00 0011 2248999999987765544
Q ss_pred HHHhccc-cCCCeEEEEeCCCCCC
Q 002130 895 IVLGNLA-NENTRVIVTGAPHNSP 917 (961)
Q Consensus 895 IPLa~LA-~~~trVVLaGDpkQLp 917 (961)
--|. ++ ..+.||||+||.+|++
T Consensus 519 ~Ll~-~A~~~~arvVllgd~~Q~a 541 (1747)
T PRK13709 519 TLLD-GAARHNVQVLILDSGQRTG 541 (1747)
T ss_pred HHHH-HHHHhCCEEEEECCccccc
Confidence 4333 33 3568999999999996
No 139
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.83 E-value=0.0038 Score=71.54 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=23.6
Q ss_pred HHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 741 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 741 AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.+..++.......++|+|||||||| |++.+|.+
T Consensus 26 ~L~~~i~~~~~~~ilL~GppGtGKT------tLA~~ia~ 58 (413)
T PRK13342 26 PLRRMIEAGRLSSMILWGPPGTGKT------TLARIIAG 58 (413)
T ss_pred HHHHHHHcCCCceEEEECCCCCCHH------HHHHHHHH
Confidence 3555555544456899999999999 66676654
No 140
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.83 E-value=0.003 Score=77.20 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=45.1
Q ss_pred CHHHHH---HHHHHHhcc---CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHH
Q 002130 735 DSDSNS---AVHQILSFE---GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 735 N~eQr~---AV~~ILs~~---~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleR 805 (961)
-+.|.+ +|...+... .....+|..|.||||| +|+.|- +|....+ .+.||+|.|.|..-=++|+.+
T Consensus 27 R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKT---laYLlP-ai~~A~~--~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 27 RAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKT---LSYLLA-GIPIARA--EKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred CHHHHHHHHHHHHHHhcccccccceEEEECCCCcchh---HHHHHH-HHHHHHH--cCCeEEEEcCCHHHHHHHHhh
Confidence 467887 555555542 1246799999999999 333333 3332233 488999999999999999866
No 141
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.82 E-value=0.0027 Score=77.96 Aligned_cols=34 Identities=9% Similarity=0.135 Sum_probs=24.2
Q ss_pred HHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 741 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 741 AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
.+.+++.....+.++|+|||||||| |++.+|...
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKT------TLA~aIA~~ 75 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKT------TLARIIANH 75 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHH------HHHHHHHHH
Confidence 4555555544557899999999999 666766543
No 142
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.81 E-value=0.0049 Score=62.91 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=68.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecc----hHHHHHHHHHHHhhCCCCceEecccccccccCc
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW----NRTCDKLMECLMKDIPASEMFRANAAFREADGV 828 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPS----NsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V 828 (961)
.+.|++++|+||| +..+...++.+.+ +.||++.-.- ...-..+++++ ++..++|.+........-
T Consensus 4 ~i~vy~g~G~Gkt-----~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g~~~~~~~~~ 72 (159)
T cd00561 4 LIQVYTGNGKGKT-----TAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERL----PNIEIHRMGRGFFWTTEN 72 (159)
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhC----CCcEEEECCCCCccCCCC
Confidence 4679999999999 5555555555554 8899984331 22333344444 466777776532211110
Q ss_pred cHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCC-----ChHHHHHHHhccccC
Q 002130 829 SDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA-----TEPETMIVLGNLANE 903 (961)
Q Consensus 829 ~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQA-----tEPEaLIPLa~LA~~ 903 (961)
..+-+..+. ..+ . .....+..+.||.||+||..-| .+.+.++-+..-...
T Consensus 73 ~~~~~~~a~---~~~--------~--------------~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~ 127 (159)
T cd00561 73 DEEDIAAAA---EGW--------A--------------FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE 127 (159)
T ss_pred hHHHHHHHH---HHH--------H--------------HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC
Confidence 111111110 000 0 0011123468999999998876 344555655533445
Q ss_pred CCeEEEEeCC
Q 002130 904 NTRVIVTGAP 913 (961)
Q Consensus 904 ~trVVLaGDp 913 (961)
...|||.|-.
T Consensus 128 ~~evIlTGr~ 137 (159)
T cd00561 128 DLELVLTGRN 137 (159)
T ss_pred CCEEEEECCC
Confidence 6799999964
No 143
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.79 E-value=0.00048 Score=71.28 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=28.8
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+|.|+-|.||+ ..+.-++.+++.. ...+|+||||+-.++..+.+.+..
T Consensus 1 VltA~RGRGKS-----a~lGl~~a~l~~~-~~~~I~vtAP~~~~~~~lf~~~~~ 48 (177)
T PF05127_consen 1 VLTADRGRGKS-----AALGLAAAALIQK-GKIRILVTAPSPENVQTLFEFAEK 48 (177)
T ss_dssp -EEE-TTSSHH-----HHHHHCCCCSSS------EEEE-SS--S-HHHHHCC--
T ss_pred CccCCCCCCHH-----HHHHHHHHHHHHh-cCceEEEecCCHHHHHHHHHHHHh
Confidence 58899999999 6666666665554 347999999999999998887764
No 144
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.79 E-value=0.011 Score=63.77 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
++++.+.+...+.....++++|+|||||||| +++.++..
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt------~~~~~l~~ 60 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKT------TAALALAR 60 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHH------HHHHHHHH
Confidence 5667777777665544456899999999999 45555443
No 145
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.78 E-value=0.0041 Score=76.41 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=30.9
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccc---cCCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLA---NENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA---~~~trVVLaG-DpkQLpPvV~S~ 923 (961)
++|.+|||||+..++. ++.-.|.... ....+|||+. |..+|.+.|+|.
T Consensus 118 gr~KVIIIDEah~LT~-~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR 169 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN-HAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 (830)
T ss_pred CCceEEEEeChhhCCH-HHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh
Confidence 5789999999976654 3333332222 1356777754 667888888875
No 146
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.0037 Score=76.23 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=30.8
Q ss_pred CCccEEEEecCCCCChHHHHHHHh-ccc--cCCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLG-NLA--NENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa-~LA--~~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+.+.+||||||..+.. ++.-.|. .|- .....+||+. |...+.+.|+|.
T Consensus 118 gk~KVIIIDEad~Ls~-~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSR 169 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK-SAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR 169 (709)
T ss_pred CCcEEEEEECccccCH-HHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHH
Confidence 3578999999976554 3332222 121 2456788775 888898888764
No 147
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.0039 Score=77.65 Aligned_cols=126 Identities=13% Similarity=0.067 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCC
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPAS 813 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~ 813 (961)
+=..|+--.++++.++ -+-|..|+|.||| ++..-+.+.+. ..+.|+++.-||-.-|.+..+||.......
T Consensus 83 ~ws~QR~WakR~~rg~---SFaiiAPTGvGKT-----Tfg~~~sl~~a--~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 83 PWSAQRVWAKRLVRGK---SFAIIAPTGVGKT-----TFGLLMSLYLA--KKGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred chHHHHHHHHHHHcCC---ceEEEcCCCCchh-----HHHHHHHHHHH--hcCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 3456999999999876 3578899999999 55444433333 357999999999999999999998732211
Q ss_pred --ceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEecC
Q 002130 814 --EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDA 885 (961)
Q Consensus 814 --~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEA 885 (961)
--+|++... .++..-++-. .+.| .+++|+|+|..-...- ...+...+||+||||++
T Consensus 153 ~~~~~~~~yh~----~l~~~ekee~-----------le~i~~gdfdIlitTs~FL~k~-~e~L~~~kFdfifVDDV 212 (1187)
T COG1110 153 GSLDVLVVYHS----ALPTKEKEEA-----------LERIESGDFDILITTSQFLSKR-FEELSKLKFDFIFVDDV 212 (1187)
T ss_pred CCcceeeeecc----ccchHHHHHH-----------HHHHhcCCccEEEEeHHHHHhh-HHHhcccCCCEEEEccH
Confidence 122332111 1121111100 1112 4688999887644321 11233458999999987
No 148
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=96.76 E-value=0.0046 Score=76.15 Aligned_cols=146 Identities=9% Similarity=0.028 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh---h
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK---D 809 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~---~ 809 (961)
.+-+.|.+++..++...+ .+++-+.|+||| .|.+-.+ ++....+..|+|+||+..-|....+.+.. .
T Consensus 68 glrpydVQlig~l~l~~G---~Iaem~TGeGKT-----Lta~Lpa--~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~ 137 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQG---NIAEMKTGEGKT-----LTATMPL--YLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEW 137 (762)
T ss_pred CCCccHHHHHHHHHhcCC---ceeEecCCcchH-----HHHHHHH--HHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhh
Confidence 355666666666554443 389999999999 3332222 22223467899999999888877776654 2
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh--hhc------cCCCCCCccEEE
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHN------QGITAGHFSHIF 881 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~------~~~~~g~FdhVI 881 (961)
+ +..+.-+... .....+.++.+ .....+.||++|....+. |.. ..+....+.++|
T Consensus 138 L-GLsv~~~~~~-s~~~~~~~~~r---------------r~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~I 200 (762)
T TIGR03714 138 L-GLTVSLGVVD-DPDEEYDANEK---------------RKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVI 200 (762)
T ss_pred c-CCcEEEEECC-CCccccCHHHH---------------HHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEE
Confidence 2 2222111100 00011111111 222467899999987753 211 112234688999
Q ss_pred EecCCCCChHHHHHHHhccccCCCeEEEEeCCCC
Q 002130 882 LIDASSATEPETMIVLGNLANENTRVIVTGAPHN 915 (961)
Q Consensus 882 IDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQ 915 (961)
||||-.++.-| ..+.+|+.|.+..
T Consensus 201 VDEaDsILiDe----------artpliisg~~~~ 224 (762)
T TIGR03714 201 VDEVDSVLLDS----------AQTPLVISGAPRV 224 (762)
T ss_pred EecHhhHhhcc----------CcCCeeeeCCCcc
Confidence 99997654333 2467888887653
No 149
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.0046 Score=73.00 Aligned_cols=143 Identities=10% Similarity=0.055 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHhccCC-CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCC
Q 002130 735 DSDSNSAVHQILSFEGQ-SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPAS 813 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~-~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~ 813 (961)
++.-.+.+.+++...+. ..+|++||+||||| |++.++.+.+....+..+--|.. -.-|.++.+. ...
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKT------T~ArilAk~LnC~~~~~~~pCg~-----C~~C~~i~~~-~~~ 85 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKT------TCARIISLCLNCSNGPTSDPCGT-----CHNCISIKNS-NHP 85 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHH------HHHHHHHHHHcCcCCCCCCCccc-----cHHHHHHhcc-CCC
Confidence 44455555555544332 35899999999999 66677665543322221111211 1223444432 234
Q ss_pred ceEeccccc-ccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHH
Q 002130 814 EMFRANAAF-READGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPE 892 (961)
Q Consensus 814 ~ilRV~a~s-R~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPE 892 (961)
+++.+++.+ +.++.|.+- ...+. ... ..+.+.++|||||...+ .+
T Consensus 86 Dv~eidaas~~~vddIR~I-ie~~~-------------------------------~~P-~~~~~KVvIIDEah~Ls-~~ 131 (491)
T PRK14964 86 DVIEIDAASNTSVDDIKVI-LENSC-------------------------------YLP-ISSKFKVYIIDEVHMLS-NS 131 (491)
T ss_pred CEEEEecccCCCHHHHHHH-HHHHH-------------------------------hcc-ccCCceEEEEeChHhCC-HH
Confidence 667776542 111111111 00000 000 12468899999995554 44
Q ss_pred HHHHHhccc-c--CCCeEEEEeC-CCCCCccccCh
Q 002130 893 TMIVLGNLA-N--ENTRVIVTGA-PHNSPSRVRSD 923 (961)
Q Consensus 893 aLIPLa~LA-~--~~trVVLaGD-pkQLpPvV~S~ 923 (961)
+.=.|.... . ....+||+-+ .+.|.+.|.|.
T Consensus 132 A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR 166 (491)
T PRK14964 132 AFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR 166 (491)
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh
Confidence 433332221 1 3457777764 46777777653
No 150
>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.004 Score=74.18 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHH
Q 002130 732 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTC 799 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAa 799 (961)
..||.+|+.....|+.. ...+.++.+|..||||| .++ ..+.+.++.. +..++.+|.+..|+
T Consensus 116 ~~l~~eqk~v~d~~~~~v~~~~g~~ff~g~~gtgKt--~l~----~t~~~~~~~~-g~~~~~v~~s~ia~ 178 (540)
T KOG0987|consen 116 KKLTPEQKRVYDAILEAVENNLGGVFFYGFGGTGKT--YLL----KTLIAALRSR-GKIVLNVASSGIAA 178 (540)
T ss_pred hhcCHHHHHHHHHHHHHHhccccceeeeccCCccce--eeH----HHHHHHHhcC-CceEEEeeecchhh
Confidence 57999999888855533 11222233899999999 333 3334445444 77888888888776
No 151
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.68 E-value=0.0054 Score=58.35 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=27.7
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCD 800 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD 800 (961)
++|.|+||+||| +.+..++.++.. .+.+|++........+
T Consensus 2 ~~i~G~~G~GKT-----~l~~~i~~~~~~--~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKT-----TLALQLALNIAT--KGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHH-----HHHHHHHHHHHh--cCCEEEEEECCcchHH
Confidence 589999999999 555555555444 3677777776555444
No 152
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.0046 Score=77.00 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
++.-++.+.+.+...+ ..-||++||+|+||| |++.++.+.+.
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKT------t~A~~lAr~L~ 62 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKT------SSARILARSLN 62 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHH------HHHHHHHHHhC
Confidence 4444555666665432 334799999999999 56666655554
No 153
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.68 E-value=0.013 Score=71.25 Aligned_cols=160 Identities=11% Similarity=0.020 Sum_probs=84.8
Q ss_pred HHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEec
Q 002130 739 NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRA 818 (961)
Q Consensus 739 r~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV 818 (961)
.+-|.+++..=.....++..|=|.||| .++.-++..++.. .+.+|+++||.-..+..+.+++...+......+.
T Consensus 175 ~~~id~~~~~fkq~~tV~taPRqrGKS-----~iVgi~l~~La~f-~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 175 LREIDRIFDEYGKCYTAATVPRRCGKT-----TIMAIILAAMISF-LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred HHHHHHHHHHHhhcceEEEeccCCCcH-----HHHHHHHHHHHHh-cCCeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 333444443312235688899999999 5554444444432 4789999999999999999998764421110000
Q ss_pred ccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChH--HHHHH
Q 002130 819 NAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP--ETMIV 896 (961)
Q Consensus 819 ~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP--EaLIP 896 (961)
. .+...+- ++. .....-.|..|....+...+|.+++.... ..+...||.||||||+-.... ++++|
T Consensus 249 f---p~~~~iv-~vk--gg~E~I~f~~p~gak~G~sti~F~Ars~~------s~RG~~~DLLIVDEAAfI~~~~l~aIlP 316 (752)
T PHA03333 249 F---PEEFKIV-TLK--GTDENLEYISDPAAKEGKTTAHFLASSPN------AARGQNPDLVIVDEAAFVNPGALLSVLP 316 (752)
T ss_pred c---CCCceEE-Eee--CCeeEEEEecCcccccCcceeEEecccCC------CcCCCCCCEEEEECcccCCHHHHHHHHH
Confidence 0 0000000 000 00011233333222222345555332211 112236899999999766554 45666
Q ss_pred HhccccCCCeEEEEeCCCCCCc
Q 002130 897 LGNLANENTRVIVTGAPHNSPS 918 (961)
Q Consensus 897 La~LA~~~trVVLaGDpkQLpP 918 (961)
+. ...++++|++.-|..-..
T Consensus 317 ~l--~~~~~k~IiISS~~~~~s 336 (752)
T PHA03333 317 LM--AVKGTKQIHISSPVDADS 336 (752)
T ss_pred HH--ccCCCceEEEeCCCCcch
Confidence 64 335778888776664433
No 154
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.67 E-value=0.0017 Score=82.97 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=47.0
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhC---CCCeEEEEecchHHHHHHHHHHHhh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS---PKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~---p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
+..||..-+||||| .||+..++.++... ...+|||+|+||+|+.+|.+|+.++
T Consensus 10 G~~lieAsAGtGKT-----~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~r 65 (1087)
T TIGR00609 10 GTFLIEASAGTGKT-----FTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRGR 65 (1087)
T ss_pred CCEEEEECCCCCHH-----HHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHHH
Confidence 46799999999999 99999999888753 3479999999999999999999874
No 155
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.0034 Score=72.19 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=30.9
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcccc--CCCeEE-EEeCCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVI-VTGAPHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~--~~trVV-LaGDpkQLpPvV~S~ 923 (961)
+++.+||||||-.+++...-.=|..+-. ..+.+| .+.++..|.|.|+|.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSR 167 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSR 167 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhh
Confidence 5788999999977766543222222222 234444 467788999998874
No 156
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.65 E-value=0.0053 Score=75.53 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=44.1
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+..+|..|=||||| +.|++.+.+.+. .++.+||+.++-.+-+..|+.|+..
T Consensus 49 ~~V~vVRSpMGTGKT-----taLi~wLk~~l~-~~~~~VLvVShRrSL~~sL~~rf~~ 100 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKT-----TALIRWLKDALK-NPDKSVLVVSHRRSLTKSLAERFKK 100 (824)
T ss_pred CCeEEEECCCCCCcH-----HHHHHHHHHhcc-CCCCeEEEEEhHHHHHHHHHHHHhh
Confidence 346799999999999 777777776654 3789999999999999999999975
No 157
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.61 E-value=0.006 Score=73.51 Aligned_cols=43 Identities=7% Similarity=0.030 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHhcc-CCCCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 735 DSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 735 N~eQr~AV~~ILs~~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.+.-.+.+..++... ....+|++||+|+||| |+|.++.+.+.+
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKT------TlA~~lAk~L~C 64 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKT------SIAKIFAKAINC 64 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHH------HHHHHHHHHhcC
Confidence 444455555555432 2334889999999999 666666665543
No 158
>PRK04195 replication factor C large subunit; Provisional
Probab=96.60 E-value=0.011 Score=69.08 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHhcc----CCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFE----GQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~----~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.-.|+.+++.+...+..- ....+||+|||||||| |+++++.+
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKT------tla~ala~ 61 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKT------SLAHALAN 61 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHH------HHHHHHHH
Confidence 346888888888877531 1457899999999999 66666544
No 159
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.60 E-value=0.0071 Score=66.66 Aligned_cols=45 Identities=9% Similarity=0.086 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.-.++.+.+.+...+.... ...+|++||||+||| +++.++.+.+.
T Consensus 16 iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt------~~a~~la~~l~ 61 (355)
T TIGR02397 16 VIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKT------SIARIFAKALN 61 (355)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 3457777777777775432 235799999999999 56666665554
No 160
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.008 Score=72.79 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=31.8
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcccc---CCCeEEEE-eCCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVT-GAPHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~---~~trVVLa-GDpkQLpPvV~S~ 923 (961)
+.|.++||||+..++ .++.-.|..... ....+||+ +|+..+.+.|.|.
T Consensus 123 g~~KV~IIDEvh~Ls-~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSR 174 (618)
T PRK14951 123 GRFKVFMIDEVHMLT-NTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSR 174 (618)
T ss_pred CCceEEEEEChhhCC-HHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHh
Confidence 578999999996655 444444432221 34567765 5889998887764
No 161
>PHA02244 ATPase-like protein
Probab=96.52 E-value=0.0069 Score=69.40 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=37.4
Q ss_pred ccEEEEecCCCCChHHHHHHHhcccc--------------CCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHcC
Q 002130 877 FSHIFLIDASSATEPETMIVLGNLAN--------------ENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT 941 (961)
Q Consensus 877 FdhVIIDEASQAtEPEaLIPLa~LA~--------------~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~~ 941 (961)
-.++||||...+. |+++..|..+.. ...++|.++.+.--+= ...++....|..+++.|++..
T Consensus 181 GgvLiLDEId~a~-p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~--~~~y~G~k~L~~AllDRFv~I 256 (383)
T PHA02244 181 GGLFFIDEIDASI-PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGA--DHIYVARNKIDGATLDRFAPI 256 (383)
T ss_pred CCEEEEeCcCcCC-HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCc--ccccCCCcccCHHHHhhcEEe
Confidence 4589999997655 777776654432 2345566555432220 111223457899999999763
No 162
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.51 E-value=0.017 Score=67.38 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=25.8
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHH-HHHhCCCCeEEEEec
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQ-IRRRSPKSRILICAP 794 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQ-Llk~~p~~RILVcAP 794 (961)
.|++|+|++||||| +.+ .+|.. +.+..++.+|+..+.
T Consensus 142 npl~i~G~~G~GKT-----HLl-~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKT-----HLL-KAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHH-----HHH-HHHHHHHHHhCCCCeEEEEEH
Confidence 57899999999999 444 55554 444456778875543
No 163
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.011 Score=70.64 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=29.9
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccc-c--CCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLA-N--ENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA-~--~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+.+.+||||||..+++. +.-.|.... . ....+||+. +++.|.|.|+|.
T Consensus 118 ~~~kViIIDE~~~Lt~~-a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR 169 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTG-AFNALLKTLEEPPAHVIFILATTEPHKIPATILSR 169 (559)
T ss_pred CCeEEEEEECcccCCHH-HHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH
Confidence 46889999999777653 333332221 2 234566544 678888888764
No 164
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=96.49 E-value=0.013 Score=71.30 Aligned_cols=64 Identities=8% Similarity=-0.150 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..-+-|..++-.++.+. |.+...|+||| .+.+-.++. ....+..++|+|||..-|....+.+..
T Consensus 103 ~p~~VQ~~~~~~ll~G~-----Iae~~TGeGKT-----la~~lp~~~--~al~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR-----LAEMQTGEGKT-----LTATLPAGT--AALAGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred CCChHHHHHHHHHhCCC-----eeeeeCCCCcH-----HHHHHHHHH--HhhcCCeEEEEcCcHHHHHHHHHHHHH
Confidence 44578999998888764 88999999999 343333332 223478999999999988877777665
No 165
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.0092 Score=71.87 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=29.4
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccc-c--CCCeEEE-EeCCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLA-N--ENTRVIV-TGAPHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA-~--~~trVVL-aGDpkQLpPvV~S~ 923 (961)
+.+.+||||||..++. ++.=.|.... . ....+|| ++++..|.+.|+|.
T Consensus 117 ~~~KVvIIDEah~Lt~-~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SR 168 (584)
T PRK14952 117 SRYRIFIVDEAHMVTT-AGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR 168 (584)
T ss_pred CCceEEEEECCCcCCH-HHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHh
Confidence 4688999999976664 3333332121 2 2445554 46778888887765
No 166
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.47 E-value=0.01 Score=69.26 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=25.0
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.|++|+||+|+||| +|+.+|...+.. .+.+|+.+.
T Consensus 142 npl~L~G~~G~GKT------HLl~Ai~~~l~~-~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKT------HLMQAAVHALRE-SGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHH------HHHHHHHHHHHH-cCCCEEEee
Confidence 47899999999999 455565554443 367777665
No 167
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.011 Score=69.91 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=28.3
Q ss_pred CCccEEEEecCCCCChHHHHHHHh-cccc--CCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLG-NLAN--ENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa-~LA~--~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+.+.+||||||...+. +.+-.|. .+-. ....+||+. ++..+.+.+.|.
T Consensus 115 ~~~kVVIIDEad~ls~-~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 115 GGRKVYILDEAHMMSK-SAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred CCCeEEEEECccccCH-HHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 4678999999976554 3333332 2222 234556554 567788877663
No 168
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.0089 Score=71.47 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.+.-...+.+++...+ ...+|++||+|+||| |++.++...+.
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKT------TlAr~lAk~L~ 63 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKT------TLGRLLAKCLN 63 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHhC
Confidence 3444445555554432 234789999999999 66777666554
No 169
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.41 E-value=0.01 Score=73.84 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHhc----cCCC-CceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSF----EGQS-PYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 735 N~eQr~AV~~ILs~----~~~~-P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
-++|.+.|..+|.. .++. .++|.|+|||||| .|+-.++.++
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKT-----ATVK~VLrEL 805 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKT-----ATVYSVIQLL 805 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHH-----HHHHHHHHHH
Confidence 57788888877754 2222 2459999999999 5555554443
No 170
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.41 E-value=0.011 Score=62.09 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=67.9
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecch----HHHHHHHHHHHhhCCCCceEecccccccccC
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN----RTCDKLMECLMKDIPASEMFRANAAFREADG 827 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSN----sAaD~LleRL~~~l~~~~ilRV~a~sR~~~~ 827 (961)
+-++|+|++|+||| +..+...++.+.+ +.+|++.-.-- ..-..+++++ +...+.|.+....+...
T Consensus 23 g~v~v~~g~GkGKt-----t~a~g~a~ra~g~--G~~V~ivQFlKg~~~~GE~~~l~~l----~~v~~~~~g~~~~~~~~ 91 (191)
T PRK05986 23 GLLIVHTGNGKGKS-----TAAFGMALRAVGH--GKKVGVVQFIKGAWSTGERNLLEFG----GGVEFHVMGTGFTWETQ 91 (191)
T ss_pred CeEEEECCCCCChH-----HHHHHHHHHHHHC--CCeEEEEEEecCCCccCHHHHHhcC----CCcEEEECCCCCcccCC
Confidence 46799999999999 5555555555554 88999886532 2223333332 34555555542111110
Q ss_pred ccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCCh-----HHHHHHHhcccc
Q 002130 828 VSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE-----PETMIVLGNLAN 902 (961)
Q Consensus 828 V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtE-----PEaLIPLa~LA~ 902 (961)
-+++-...+. ..| . .....+..+.||.||+||..-|.. -+-++-+..-..
T Consensus 92 ~~~e~~~~~~---~~~--------~--------------~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp 146 (191)
T PRK05986 92 DRERDIAAAR---EGW--------E--------------EAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARP 146 (191)
T ss_pred CcHHHHHHHH---HHH--------H--------------HHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC
Confidence 0111000000 000 0 001112356899999999877654 455555543344
Q ss_pred CCCeEEEEeC
Q 002130 903 ENTRVIVTGA 912 (961)
Q Consensus 903 ~~trVVLaGD 912 (961)
....|||.|-
T Consensus 147 ~~~evVlTGR 156 (191)
T PRK05986 147 GMQHVVITGR 156 (191)
T ss_pred CCCEEEEECC
Confidence 5679999996
No 171
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.39 E-value=0.022 Score=56.87 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=25.0
Q ss_pred CCccEEEEecCCCCC-hHHHHHHHhcccc--CCCeEEEEeCCC
Q 002130 875 GHFSHIFLIDASSAT-EPETMIVLGNLAN--ENTRVIVTGAPH 914 (961)
Q Consensus 875 g~FdhVIIDEASQAt-EPEaLIPLa~LA~--~~trVVLaGDpk 914 (961)
..+++||||.++... +.+.+--|..+.. ....++||-|..
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~ 123 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAM 123 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 468999999998753 2333333332222 367888899873
No 172
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.33 E-value=0.002 Score=68.35 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=42.1
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHcC
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT 941 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~~ 941 (961)
..|+||||||| |-+.|..+--|..|+....++++|||++|= |++- .|-+..+|.++.+.
T Consensus 255 ~~~~~i~IDE~-QD~s~~Q~~il~~l~~~~~~~~~vGD~~Qs---IY~f----rga~~~~~~~~~~~ 313 (315)
T PF00580_consen 255 QRYDHILIDEF-QDTSPLQLRILKKLFKNPENLFIVGDPNQS---IYGF----RGADPELFEEFKER 313 (315)
T ss_dssp HHSSEEEESSG-GG-BHHHHHHHHHHHTTTTTEEEEE-GGG-----GGG----GTB-THHHHHHHHH
T ss_pred hhCCeEEeEcc-ccCCHHHHHHHHHHHHhhceeEEeCCCCcc---eeec----CCCCHHHHHHHHhh
Confidence 37999999999 777787777777677777789999999995 3331 36678888887664
No 173
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.01 Score=67.93 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=27.6
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..+++.||+|+||| +|++.++.+++......+|.+.+
T Consensus 138 ~ii~lvGptGvGKT-----TtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 138 GVFALMGPTGVGKT-----TTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred cEEEEECCCCCCHH-----HHHHHHHHHHHHhcCCCeEEEEe
Confidence 36789999999999 88888887765443345776654
No 174
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.32 E-value=0.0077 Score=62.91 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=27.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeE-EEEecch
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI-LICAPWN 796 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RI-LVcAPSN 796 (961)
.+++.||.|.||| +|++.+..++..+ +.+| |||+-+.
T Consensus 3 vi~lvGptGvGKT-----Tt~aKLAa~~~~~--~~~v~lis~D~~ 40 (196)
T PF00448_consen 3 VIALVGPTGVGKT-----TTIAKLAARLKLK--GKKVALISADTY 40 (196)
T ss_dssp EEEEEESTTSSHH-----HHHHHHHHHHHHT--T--EEEEEESTS
T ss_pred EEEEECCCCCchH-----hHHHHHHHHHhhc--cccceeecCCCC
Confidence 4688999999999 9999999887765 5555 5666654
No 175
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.0098 Score=72.08 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHhcc-CCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
++.-.+.+..++... ...-+|++||+||||| |++.++++.+.
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKt------tlA~~lAk~L~ 63 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKT------SSARILAKSLN 63 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChH------HHHHHHHHHhc
Confidence 344444455555443 2345789999999999 66666666554
No 176
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.31 E-value=0.031 Score=65.36 Aligned_cols=132 Identities=14% Similarity=0.175 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH-Hh---CCCC--eEEEEecchHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RR---SPKS--RILICAPWNRTCDKLMEC 805 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl-k~---~p~~--RILVcAPSNsAaD~LleR 805 (961)
....+-|..++-..+++.+ +++..+.|+||||. .+-=++.++ ++ .+.. .-||.+||..-|-+|.+=
T Consensus 27 ~~mTpVQa~tIPlll~~KD---VvveavTGSGKTlA-----FllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V 98 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLKNKD---VVVEAVTGSGKTLA-----FLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREV 98 (567)
T ss_pred cccCHHHHhhhHHHhcCCc---eEEEcCCCCCchhh-----HHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHH
Confidence 4568899999999888763 68999999999943 222233333 32 2233 568999999888777665
Q ss_pred HHh---hCCCC-ceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhc---cCCCCCCcc
Q 002130 806 LMK---DIPAS-EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN---QGITAGHFS 878 (961)
Q Consensus 806 L~~---~l~~~-~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~---~~~~~g~Fd 878 (961)
+.. ++... ..+=+|. .+|.+++..+-. ...+|+|+|..-...+.. ..+.-.+..
T Consensus 99 ~~~F~~~l~~l~~~l~vGG-----~~v~~Di~~fke--------------e~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 99 AQPFLEHLPNLNCELLVGG-----RSVEEDIKTFKE--------------EGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred HHHHHHhhhccceEEEecC-----ccHHHHHHHHHH--------------hCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 544 22221 1222332 245556554332 345788888743322111 123334678
Q ss_pred EEEEecCCCCCh
Q 002130 879 HIFLIDASSATE 890 (961)
Q Consensus 879 hVIIDEASQAtE 890 (961)
++|+|||-..++
T Consensus 160 ~LVLDEADrLld 171 (567)
T KOG0345|consen 160 ILVLDEADRLLD 171 (567)
T ss_pred eEEecchHhHhc
Confidence 999999976444
No 177
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.29 E-value=0.0094 Score=60.55 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=28.1
Q ss_pred CCccEEEEecCCCCChHH--HHHHHhccccCCCeEEEE-eCCCCCCccccC
Q 002130 875 GHFSHIFLIDASSATEPE--TMIVLGNLANENTRVIVT-GAPHNSPSRVRS 922 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPE--aLIPLa~LA~~~trVVLa-GDpkQLpPvV~S 922 (961)
+.+.+||||||..+++.. .|+....-....+.+||+ .+...|.+.+++
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh
Confidence 467889999997766532 233332111234566664 466777766655
No 178
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.014 Score=70.19 Aligned_cols=42 Identities=5% Similarity=0.044 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
-++...+.+.+.+.... ...||++||+||||| |++.++...+
T Consensus 20 Gq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKt------t~A~~lak~l 62 (576)
T PRK14965 20 GQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKT------STARILAKAL 62 (576)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHhh
Confidence 45666677777765432 334799999999999 5555555444
No 179
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.023 Score=65.39 Aligned_cols=51 Identities=10% Similarity=0.036 Sum_probs=32.9
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHh--CCCCeEE-EEecc--hHHHHHHHHHHHh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRIL-ICAPW--NRTCDKLMECLMK 808 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--~p~~RIL-VcAPS--NsAaD~LleRL~~ 808 (961)
..+++.||.|+||| +|++.++.++... ..+.+|+ |++-+ ..|++. +..+.+
T Consensus 175 ~vi~lvGptGvGKT-----TT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ-L~~~a~ 230 (388)
T PRK12723 175 RVFILVGPTGVGKT-----TTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ-IQTYGD 230 (388)
T ss_pred eEEEEECCCCCCHH-----HHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH-HHHHhh
Confidence 45789999999999 8998887765532 2355665 45555 334444 444443
No 180
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0066 Score=70.53 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=23.9
Q ss_pred ccceEEEEeeccchhhhccCCCCCCccE-EEEecC
Q 002130 852 RQYKVISSTFVSSFRLHNQGITAGHFSH-IFLIDA 885 (961)
Q Consensus 852 ~~~rVVvtT~ssag~L~~~~~~~g~Fdh-VIIDEA 885 (961)
.+.||||-|..-..+|-.+-+++|..|+ |-+.=|
T Consensus 336 g~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyC 370 (457)
T KOG0743|consen 336 GDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYC 370 (457)
T ss_pred CCceEEEEecCChhhcCHhhcCCCcceeEEEcCCC
Confidence 4578998888877776666678888774 655444
No 181
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.25 E-value=0.0091 Score=69.97 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCC----------CCeEEEEecchHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP----------KSRILICAPWNRTCDK 801 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p----------~~RILVcAPSNsAaD~ 801 (961)
...++-|+.++..|..+++ .++.++.|.|||. -.+.-+|-++++... ..++||.|||+.-||.
T Consensus 95 ~~ptpvQk~sip~i~~Grd---l~acAqTGsGKT~----aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Q 167 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIISGGRD---LMACAQTGSGKTA----AFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQ 167 (482)
T ss_pred cCCCcceeeccceeecCCc---eEEEccCCCcchH----HHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhH
Confidence 3568889999998887764 4899999999992 245556666665422 4689999999999999
Q ss_pred HHHHHHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccC-CCCCCccEE
Q 002130 802 LMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFSHI 880 (961)
Q Consensus 802 LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~-~~~g~FdhV 880 (961)
|-++-.+...... +|.....+. ..+-.. -...-+++.|+|||-.-...+...+ +.-....++
T Consensus 168 i~nea~k~~~~s~-~~~~~~ygg-~~~~~q---------------~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~ 230 (482)
T KOG0335|consen 168 IYNEARKFSYLSG-MKSVVVYGG-TDLGAQ---------------LRFIKRGCDILVATPGRLKDLIERGKISLDNCKFL 230 (482)
T ss_pred HHHHHHhhccccc-ceeeeeeCC-cchhhh---------------hhhhccCccEEEecCchhhhhhhcceeehhhCcEE
Confidence 9999876422221 121111111 000000 0122367899999976554433322 112245689
Q ss_pred EEecCCCCCh
Q 002130 881 FLIDASSATE 890 (961)
Q Consensus 881 IIDEASQAtE 890 (961)
++|||-.+..
T Consensus 231 vLDEADrMlD 240 (482)
T KOG0335|consen 231 VLDEADRMLD 240 (482)
T ss_pred EecchHHhhh
Confidence 9999976544
No 182
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=96.24 E-value=0.0066 Score=70.90 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh----CCCCeEEEEecchHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----SPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~----~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
..+.+-|...+.-+|.+++ +|...-.|||||+.+ ++-+|..+++. +.+..+|||+||..-|-++...+.
T Consensus 103 ~~MT~VQ~~ti~pll~gkD---vl~~AKTGtGKTlAF----LiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak 175 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEGKD---VLAAAKTGTGKTLAF----LLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAK 175 (543)
T ss_pred cchhHHHHhhcCccCCCcc---ceeeeccCCCceeee----hhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHH
Confidence 4678889999998888763 589999999999543 33444444443 346689999999988877765554
Q ss_pred hhCCCCc----eEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-cc----CCCCCCcc
Q 002130 808 KDIPASE----MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQ----GITAGHFS 878 (961)
Q Consensus 808 ~~l~~~~----ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~----~~~~g~Fd 878 (961)
+.+.... -+-++.. .|.......-..++|+|+|.. +|. ++ +|...+.+
T Consensus 176 ~Ll~~h~~~~v~~viGG~--------------------~~~~e~~kl~k~~niliATPG---RLlDHlqNt~~f~~r~~k 232 (543)
T KOG0342|consen 176 ELLKYHESITVGIVIGGN--------------------NFSVEADKLVKGCNILIATPG---RLLDHLQNTSGFLFRNLK 232 (543)
T ss_pred HHHhhCCCcceEEEeCCc--------------------cchHHHHHhhccccEEEeCCc---hHHhHhhcCCcchhhccc
Confidence 4221111 1112211 111111122246788998874 332 11 12222346
Q ss_pred EEEEecCCCCChH
Q 002130 879 HIFLIDASSATEP 891 (961)
Q Consensus 879 hVIIDEASQAtEP 891 (961)
+.|||||-..+|-
T Consensus 233 ~lvlDEADrlLd~ 245 (543)
T KOG0342|consen 233 CLVLDEADRLLDI 245 (543)
T ss_pred eeEeecchhhhhc
Confidence 7999999887653
No 183
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=96.24 E-value=0.013 Score=74.83 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=48.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
...|.+.|++||..+|.+++ +|+..|.|+||| ++..+-.++. +..+||.+|+-+-+..-+.+|..
T Consensus 458 ~~sFRp~Q~eaI~aiL~GrD---VLVimPTGSGKS-------LcYQLPAL~~---~GiTLVISPLiSLmqDQV~~L~~ 522 (1195)
T PLN03137 458 NHSFRPNQREIINATMSGYD---VFVLMPTGGGKS-------LTYQLPALIC---PGITLVISPLVSLIQDQIMNLLQ 522 (1195)
T ss_pred CCCCCHHHHHHHHHHHcCCC---EEEEcCCCccHH-------HHHHHHHHHc---CCcEEEEeCHHHHHHHHHHHHHh
Confidence 35789999999999998763 699999999999 2222222222 45799999999988666666654
No 184
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=96.20 E-value=0.016 Score=71.96 Aligned_cols=131 Identities=12% Similarity=0.031 Sum_probs=80.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-----CCCCeEEEEecchHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-----SPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-----~p~~RILVcAPSNsAaD~LleRL 806 (961)
..+++.|+.|+..|..+. -+||..|.|+|||++ .+.-++-.+++. ..+-.+|..+|=.+-...|..||
T Consensus 21 ~~~t~~Q~~a~~~i~~G~---nvLiiAPTGsGKTeA----AfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL 93 (814)
T COG1201 21 TSLTPPQRYAIPEIHSGE---NVLIIAPTGSGKTEA----AFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRL 93 (814)
T ss_pred CCCCHHHHHHHHHHhCCC---ceEEEcCCCCChHHH----HHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHH
Confidence 368999999999999776 379999999999932 222333444544 12357899999999999999998
Q ss_pred HhhCC--CCce-EecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc-CCC--CCCccEE
Q 002130 807 MKDIP--ASEM-FRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GIT--AGHFSHI 880 (961)
Q Consensus 807 ~~~l~--~~~i-lRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~-~~~--~g~FdhV 880 (961)
..-.. +.++ +|-+. .+..-+ . +..-.--.|+++|--+...+... .+. -....+|
T Consensus 94 ~~~~~~~G~~v~vRhGD-------T~~~er--------~-----r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~V 153 (814)
T COG1201 94 EEPLRELGIEVAVRHGD-------TPQSEK--------Q-----KMLKNPPHILITTPESLAILLNSPKFRELLRDVRYV 153 (814)
T ss_pred HHHHHHcCCccceecCC-------CChHHh--------h-----hccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEE
Confidence 76211 1111 22211 111101 0 01112347888888776543322 111 1357899
Q ss_pred EEecCCCCC
Q 002130 881 FLIDASSAT 889 (961)
Q Consensus 881 IIDEASQAt 889 (961)
||||.....
T Consensus 154 IVDEiHel~ 162 (814)
T COG1201 154 IVDEIHALA 162 (814)
T ss_pred Eeehhhhhh
Confidence 999986544
No 185
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.20 E-value=0.021 Score=71.61 Aligned_cols=133 Identities=9% Similarity=0.090 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh--------CCCCeEEEEecchHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--------SPKSRILICAPWNRTCDKLM 803 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--------~p~~RILVcAPSNsAaD~Ll 803 (961)
..||.-|-.+..-+-.... =.||..|.|.||| .+..-+|++.+++ ..+.+|...||+.+-|-+++
T Consensus 109 ~~fN~iQS~vFp~aY~Sne--NMLIcAPTGsGKT-----~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~ 181 (1230)
T KOG0952|consen 109 EEFNRIQSEVFPVAYKSNE--NMLICAPTGSGKT-----VLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMV 181 (1230)
T ss_pred HHHHHHHHHhhhhhhcCCC--CEEEECCCCCCch-----HHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHH
Confidence 4689999999988876543 3699999999999 4444456666663 25679999999999999999
Q ss_pred HHHHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc---C-CCCCCccE
Q 002130 804 ECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ---G-ITAGHFSH 879 (961)
Q Consensus 804 eRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~---~-~~~g~Fdh 879 (961)
++..+.+....+ ++ |++ ..|.. -.+.++.+++|||+|.--..-.... + --.+...+
T Consensus 182 ~~~~kkl~~~gi-~v----~EL---TGD~q------------l~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~L 241 (1230)
T KOG0952|consen 182 DKFSKKLAPLGI-SV----REL---TGDTQ------------LTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRL 241 (1230)
T ss_pred HHHhhhcccccc-eE----EEe---cCcch------------hhHHHHHhcCEEEecccceeeeeeeeccchhhhhheee
Confidence 999875432111 11 111 10100 1134467888888886533211100 0 01124678
Q ss_pred EEEecCCCCChH
Q 002130 880 IFLIDASSATEP 891 (961)
Q Consensus 880 VIIDEASQAtEP 891 (961)
|||||..-.-|+
T Consensus 242 viIDEVHlLhd~ 253 (1230)
T KOG0952|consen 242 VIIDEVHLLHDD 253 (1230)
T ss_pred EEeeeehhhcCc
Confidence 999999765554
No 186
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=96.18 E-value=0.005 Score=79.39 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=44.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCC----------CCeEEEEecchHHHHHHHHHHHhh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP----------KSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p----------~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..||-.-.||||| .||+...++++-... -..|||+|.||+|+.+|.+|+.++
T Consensus 19 ~~LIEASAGTGKT-----yTIa~lyLrLlL~~g~~~~~~~~L~~~~ILvvTFT~aAt~Elr~RIr~r 80 (1181)
T PRK10876 19 ERLIEASAGTGKT-----FTIAALYLRLLLGLGGSAAFPRPLTVEEILVVTFTEAATEELRGRIRSN 80 (1181)
T ss_pred CEEEEeCCCCcHH-----HHHHHHHHHHHccCCccccccCCCChhhEEEEechHHHHHHHHHHHHHH
Confidence 4699999999999 999999998876322 148999999999999999999763
No 187
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.014 Score=66.06 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=28.1
Q ss_pred CCccEEEEecCCCCChH--HHHHHHhccccCCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEP--ETMIVLGNLANENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEP--EaLIPLa~LA~~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+.+.+||||||..+++- ++|+-...--....++||++ |..+|.+.+.|.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR 169 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR 169 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh
Confidence 46789999999666542 23332221111344677765 456777766653
No 188
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.031 Score=62.75 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHhcc-CCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++...+.+...+... ....+|++||||+||| +++.++...+
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt------~~a~~la~~l 63 (367)
T PRK14970 21 GQSHITNTLLNAIENNHLAQALLFCGPRGVGKT------TCARILARKI 63 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHh
Confidence 4566666677666543 2346899999999999 5556655444
No 189
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.16 E-value=0.035 Score=67.31 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=25.9
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.+++|+|++||||| ..+..+..++.+..++.+|+..+-
T Consensus 315 NpL~LyG~sGsGKT-----HLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 315 NPLFIYGESGLGKT-----HLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CcEEEECCCCCCHH-----HHHHHHHHHHHHhCCCCeEEEeeH
Confidence 46899999999999 544444444444445777776653
No 190
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.025 Score=67.53 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=30.7
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccc---cCCCeEEEEeC-CCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLA---NENTRVIVTGA-PHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA---~~~trVVLaGD-pkQLpPvV~S~ 923 (961)
+.+.+||||||..++ .++.=.|.... ...+++||++. +..|.|.++|.
T Consensus 116 ~~~KVvIIDEad~Lt-~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR 167 (535)
T PRK08451 116 ARFKIFIIDEVHMLT-KEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 167 (535)
T ss_pred CCeEEEEEECcccCC-HHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh
Confidence 468899999996555 54443332222 24567787765 57788888775
No 191
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.15 E-value=0.0088 Score=64.72 Aligned_cols=61 Identities=10% Similarity=0.180 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHhc-----cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 735 N~eQr~AV~~ILs~-----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
++.|+.|+..+..- .+...++++|+|||||| +.++.++.++.+. +.+|++++ +..++.++.
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKT-----hLa~aia~~l~~~--g~~v~~it-----~~~l~~~l~ 143 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKN-----HLAAAICNELLLR--GKSVLIIT-----VADIMSAMK 143 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEE-----HHHHHHHHH
Confidence 56788787766642 11246899999999999 5555555555543 67887773 344555554
No 192
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.14 E-value=0.018 Score=69.21 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.++.-.+.+...+.... ...||++||+|+||| |++.++++.+-
T Consensus 20 Gqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKT------t~Ar~lAk~L~ 63 (563)
T PRK06647 20 GQDFVVETLKHSIESNKIANAYIFSGPRGVGKT------SSARAFARCLN 63 (563)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHhhc
Confidence 35555556666665432 234899999999999 66666665543
No 193
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.014 Score=70.76 Aligned_cols=42 Identities=7% Similarity=0.083 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
++.-++.+.+++.... ..-||++|||||||| |++.++.+.+.
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKT------tiArilAk~L~ 63 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKT------TIARIFAKALN 63 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHH------HHHHHHHHhcc
Confidence 4444555555554432 345778999999999 66666665443
No 194
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=96.13 E-value=0.025 Score=70.90 Aligned_cols=127 Identities=13% Similarity=0.044 Sum_probs=82.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh---
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD--- 809 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~--- 809 (961)
.|=..|.+|++.+..++ .+||.-|.|+|||+ ..++-++-++++ .+..+-|+.-|+|+-|..=.+||.+.
T Consensus 70 ~lY~HQ~~A~~~~~~G~---~vvVtTgTgSGKTe----~FllPIld~~l~-~~~a~AL~lYPtnALa~DQ~~rl~~~~~~ 141 (851)
T COG1205 70 RLYSHQVDALRLIREGR---NVVVTTGTGSGKTE----SFLLPILDHLLR-DPSARALLLYPTNALANDQAERLRELISD 141 (851)
T ss_pred cccHHHHHHHHHHHCCC---CEEEECCCCCchhH----HHHHHHHHHHhh-CcCccEEEEechhhhHhhHHHHHHHHHHh
Confidence 47789999999998775 58999999999992 233344444444 57779999999999999999999873
Q ss_pred CCC-CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCC-----CCCCccEEEEe
Q 002130 810 IPA-SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGI-----TAGHFSHIFLI 883 (961)
Q Consensus 810 l~~-~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~-----~~g~FdhVIID 883 (961)
++. ..+.|+. .+.+.+-++ .. .-...+||+|+..+......... ...+..+||||
T Consensus 142 ~~~~v~~~~y~------Gdt~~~~r~------~~-------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvD 202 (851)
T COG1205 142 LPGKVTFGRYT------GDTPPEERR------AI-------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVD 202 (851)
T ss_pred CCCcceeeeec------CCCChHHHH------HH-------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEe
Confidence 221 2222222 122222111 00 11456899999887755221110 11247889999
Q ss_pred cCC
Q 002130 884 DAS 886 (961)
Q Consensus 884 EAS 886 (961)
|+.
T Consensus 203 ElH 205 (851)
T COG1205 203 ELH 205 (851)
T ss_pred cce
Confidence 984
No 195
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.12 E-value=0.011 Score=66.70 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..++++-..+|...+... .+++|.|||||||| ++++.+...+
T Consensus 47 y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKT------tla~~lA~~l 88 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--RRVMVQGYHGTGKS------THIEQIAARL 88 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHH------HHHHHHHHHH
Confidence 457888888888877543 36899999999999 5666655544
No 196
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.09 E-value=0.0063 Score=78.10 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=46.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
.++|.+++||||| .+|++.++.++.. ....+||+.|+||.||.+|.+|+.+.+
T Consensus 12 ~~~~~a~agsgkt-----~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 12 SAWVSANAGSGKT-----HVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CEEEEEECCCCHH-----HHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 4789999999999 9999999888854 345799999999999999999998743
No 197
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.08 E-value=0.023 Score=66.33 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=25.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.+++.|++|+||| +|++.++.++.+. +.+|++++
T Consensus 97 vI~lvG~~GsGKT-----TtaakLA~~L~~~--g~kV~lV~ 130 (437)
T PRK00771 97 TIMLVGLQGSGKT-----TTAAKLARYFKKK--GLKVGLVA 130 (437)
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHHc--CCeEEEec
Confidence 4678999999999 8888877765543 55666543
No 198
>PF13173 AAA_14: AAA domain
Probab=96.08 E-value=0.022 Score=54.66 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=24.1
Q ss_pred CccEEEEecCCCCChHHHHHHHhccccC--CCeEEEEeC
Q 002130 876 HFSHIFLIDASSATEPETMIVLGNLANE--NTRVIVTGA 912 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPEaLIPLa~LA~~--~trVVLaGD 912 (961)
...+|||||+..+- +....|..+.+. ..++|++|=
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNGPNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhccCceEEEEcc
Confidence 46789999997664 444445545544 369999995
No 199
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.06 E-value=0.0034 Score=56.75 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=24.7
Q ss_pred ccEEEEecCCCCChHHHHHHHhc----------cccCCCeEEEEeCC
Q 002130 877 FSHIFLIDASSATEPETMIVLGN----------LANENTRVIVTGAP 913 (961)
Q Consensus 877 FdhVIIDEASQAtEPEaLIPLa~----------LA~~~trVVLaGDp 913 (961)
.++|||||+..........-+.. .......+|++..+
T Consensus 79 ~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 68899999998877765543321 12345678887775
No 200
>COG4889 Predicted helicase [General function prediction only]
Probab=96.04 E-value=0.019 Score=70.87 Aligned_cols=145 Identities=18% Similarity=0.140 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHhc-c--CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSF-E--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~-~--~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..+-+.|+.|+.+++.. . ..+ -||. .+||||| +++.-|.|++. ..|||..+||-+-.-+-++....
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RG-kLIM-AcGTGKT--fTsLkisEala-------~~~iL~LvPSIsLLsQTlrew~~ 228 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRG-KLIM-ACGTGKT--FTSLKISEALA-------AARILFLVPSISLLSQTLREWTA 228 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCC-cEEE-ecCCCcc--chHHHHHHHHh-------hhheEeecchHHHHHHHHHHHhh
Confidence 56889999999999965 1 112 2444 7899999 22222344333 37999999987755444444432
Q ss_pred hCCCCceEeccccc--ccccCccHHHHHhhhh------cccccC-CChhhhhccceEEEEeeccchhhhccC-CCCCCcc
Q 002130 809 DIPASEMFRANAAF--READGVSDEIFQVSLV------ERECFS-CPPLEELRQYKVISSTFVSSFRLHNQG-ITAGHFS 878 (961)
Q Consensus 809 ~l~~~~ilRV~a~s--R~~~~V~~~I~~y~~~------~~~~F~-~p~~e~L~~~rVVvtT~ssag~L~~~~-~~~g~Fd 878 (961)
. ...-+|-.+-. +.+..-.+++..+-.- .+.... ....+.-..--||++|.-++-...... .-.+.||
T Consensus 229 ~--~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fD 306 (1518)
T COG4889 229 Q--KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFD 306 (1518)
T ss_pred c--cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCcc
Confidence 1 11122222211 1111111111110000 000000 000001123458999998886544221 1124799
Q ss_pred EEEEecCCCCC
Q 002130 879 HIFLIDASSAT 889 (961)
Q Consensus 879 hVIIDEASQAt 889 (961)
+||.|||...+
T Consensus 307 liicDEAHRTt 317 (1518)
T COG4889 307 LIICDEAHRTT 317 (1518)
T ss_pred EEEecchhccc
Confidence 99999997654
No 201
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.0073 Score=66.76 Aligned_cols=150 Identities=13% Similarity=0.131 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHHhh---C
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMKD---I 810 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-p~~RILVcAPSNsAaD~LleRL~~~---l 810 (961)
..-|+.||..||.+++ ++.|.--||||| .|+.--++|.+.-. +...+||.+||..-|-.+-+-+... +
T Consensus 51 S~IQqrAi~~IlkGrd---ViaQaqSGTGKT-----a~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~m 122 (400)
T KOG0328|consen 51 SAIQQRAIPQILKGRD---VIAQAQSGTGKT-----ATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYM 122 (400)
T ss_pred hHHHhhhhhhhhcccc---eEEEecCCCCce-----EEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccc
Confidence 5669999999998874 689999999999 55555566665432 3468999999999888887776641 1
Q ss_pred CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-ccCCCCCCccEEEEecCCCCC
Q 002130 811 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 811 ~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~~~~~g~FdhVIIDEASQAt 889 (961)
.-....-++. ..+.++++.. + ....||..|......+. ...++......+++|||--++
T Consensus 123 nvq~hacigg-----~n~gedikkl--------------d-~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL 182 (400)
T KOG0328|consen 123 NVQCHACIGG-----KNLGEDIKKL--------------D-YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEML 182 (400)
T ss_pred cceEEEEecC-----Cccchhhhhh--------------c-ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHH
Confidence 1111111211 1233444321 1 23356666654443222 223445568889999995433
Q ss_pred hH---HHHHHHhccccCCCeEEEEeC
Q 002130 890 EP---ETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 890 EP---EaLIPLa~LA~~~trVVLaGD 912 (961)
.- +.+.-+-....++.++||+.-
T Consensus 183 ~kgfk~Qiydiyr~lp~~~Qvv~~SA 208 (400)
T KOG0328|consen 183 NKGFKEQIYDIYRYLPPGAQVVLVSA 208 (400)
T ss_pred HhhHHHHHHHHHHhCCCCceEEEEec
Confidence 21 222222223346788888764
No 202
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=95.97 E-value=0.02 Score=70.57 Aligned_cols=132 Identities=9% Similarity=-0.099 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCce
Q 002130 736 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEM 815 (961)
Q Consensus 736 ~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~i 815 (961)
+.|..+...++.+ .+.+...|+||| .+.+-++ ++....+..|+|+|||..-|....+.+........
T Consensus 59 ~vQlig~~~l~~G-----~Iaem~TGeGKT-----Lva~lpa--~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LG- 125 (745)
T TIGR00963 59 DVQLIGGIALHKG-----KIAEMKTGEGKT-----LTATLPA--YLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLG- 125 (745)
T ss_pred chHHhhhhhhcCC-----ceeeecCCCccH-----HHHHHHH--HHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCC-
Confidence 3455554433332 288999999999 3322222 12222367899999999988888877665322111
Q ss_pred EecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh--hhcc------CCCCCCccEEEEecCCC
Q 002130 816 FRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHNQ------GITAGHFSHIFLIDASS 887 (961)
Q Consensus 816 lRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~~------~~~~g~FdhVIIDEASQ 887 (961)
++++.- ...++..-+ .....+.||++|..-.|. |... .+....+.++|||||-.
T Consensus 126 Lsv~~i---~g~~~~~~r---------------~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs 187 (745)
T TIGR00963 126 LSVGLI---LSGMSPEER---------------REAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDS 187 (745)
T ss_pred CeEEEE---eCCCCHHHH---------------HHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHH
Confidence 222211 111121111 122346899999885532 2211 12345689999999988
Q ss_pred CChHHHHHHHh
Q 002130 888 ATEPETMIVLG 898 (961)
Q Consensus 888 AtEPEaLIPLa 898 (961)
+..-|+-.||.
T Consensus 188 ~LIDeaRtpLi 198 (745)
T TIGR00963 188 ILIDEARTPLI 198 (745)
T ss_pred HhHHhhhhHHh
Confidence 77767777765
No 203
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.89 E-value=0.02 Score=70.43 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=29.9
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccc-c--CCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLA-N--ENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA-~--~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+.+.++|||||..++ .+++-.|.... . ....+||+. ++..|.|.|+|.
T Consensus 117 g~~KV~IIDEa~~LT-~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR 168 (725)
T PRK07133 117 SKYKIYIIDEVHMLS-KSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR 168 (725)
T ss_pred CCCEEEEEEChhhCC-HHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh
Confidence 467899999996554 44444443221 1 345666665 678888877654
No 204
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.86 E-value=0.023 Score=70.62 Aligned_cols=124 Identities=9% Similarity=-0.005 Sum_probs=71.4
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCcc-HHHH
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVS-DEIF 833 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~-~~I~ 833 (961)
+..-..|+||| .+.+ +..++....+.+|+|+|||..-|....+.+....... -++++.- ....+ .+
T Consensus 95 Iaem~TGeGKT-----L~a~--lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl~v~~i---~g~~~~~~-- 161 (790)
T PRK09200 95 IAEMQTGEGKT-----LTAT--MPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFL-GLTVGLN---FSDIDDAS-- 161 (790)
T ss_pred eeeecCCCcch-----HHHH--HHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEE---eCCCCcHH--
Confidence 88999999999 3322 2222233358899999999998888887776522111 0122110 01111 11
Q ss_pred HhhhhcccccCCChhhhhccceEEEEeeccchh--hhc-cC-----CCCCCccEEEEecCCCCChHHHHHHHhccccCCC
Q 002130 834 QVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHN-QG-----ITAGHFSHIFLIDASSATEPETMIVLGNLANENT 905 (961)
Q Consensus 834 ~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~-~~-----~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~t 905 (961)
.......+.|+++|..-.|. |.. +. .....+.++|||||-.++--|+ .+
T Consensus 162 -------------~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea----------~t 218 (790)
T PRK09200 162 -------------EKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEA----------QT 218 (790)
T ss_pred -------------HHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccC----------CC
Confidence 11233567899999766642 221 11 1234689999999987654443 34
Q ss_pred eEEEEeCCC
Q 002130 906 RVIVTGAPH 914 (961)
Q Consensus 906 rVVLaGDpk 914 (961)
-+|+.|...
T Consensus 219 pliisg~~~ 227 (790)
T PRK09200 219 PLIISGKPR 227 (790)
T ss_pred ceeeeCCCc
Confidence 566777543
No 205
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.85 E-value=0.043 Score=58.07 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHhccC--CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 734 LDSDSNSAVHQILSFEG--QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~--~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
-|..=..|++.+....+ ..|++|+||+|+||| +.+..+..++.+..++.+|+....
T Consensus 15 ~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKT-----HLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 15 SNELAYAAAKAIAENPGERYNPLFLYGPSGLGKT-----HLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHH-----HHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred cHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHH-----HHHHHHHHHHHhccccccceeecH
Confidence 36666666776665543 247899999999999 655555555666667888877653
No 206
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.85 E-value=0.036 Score=67.09 Aligned_cols=43 Identities=5% Similarity=-0.007 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.++...+.+.+++...+ ..-+|++||+|+||| |++.++.+.+.
T Consensus 28 Gq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKT------t~Ar~lAk~L~ 71 (598)
T PRK09111 28 GQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKT------TTARILARALN 71 (598)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHH------HHHHHHHHhhC
Confidence 35566666666665432 234899999999999 55566555443
No 207
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.85 E-value=0.025 Score=63.34 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=31.8
Q ss_pred CCccEEEEecCCCCChHHHHHHHh-cccc--CCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLG-NLAN--ENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa-~LA~--~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+.+.+||||||..+++..+ =.|. .|-. ..+.+||+. ++.+|.|+|+|.
T Consensus 109 ~~~kvviI~~a~~~~~~a~-NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR 160 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAA-NSLLKFLEEPSGGTTAILLTENKHQILPTILSR 160 (329)
T ss_pred cCceEEEeehHhhhCHHHH-HHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh
Confidence 4678999999977665432 2222 1222 457788877 568899988874
No 208
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=95.84 E-value=0.039 Score=69.22 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH-HhCCCCeEEEEecchHHHHHHHHHHHhhCCCCce
Q 002130 737 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RRSPKSRILICAPWNRTCDKLMECLMKDIPASEM 815 (961)
Q Consensus 737 eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl-k~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~i 815 (961)
.+++++..++... ..++|.|-.|+||| +=+-..|+.-. ...+..+|+++-|-..||--+++|+..... ..+
T Consensus 176 ~~r~~Il~~i~~~--qVvvIsGeTGcGKT-----TQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~-~~~ 247 (924)
T KOG0920|consen 176 KMRDTILDAIEEN--QVVVISGETGCGKT-----TQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERG-ESL 247 (924)
T ss_pred HHHHHHHHHHHhC--ceEEEeCCCCCCch-----hhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhc-ccc
Confidence 4566666655542 25799999999999 66777776644 334667999999999999999999987421 111
Q ss_pred Eeccc-ccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChH-H-
Q 002130 816 FRANA-AFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP-E- 892 (961)
Q Consensus 816 lRV~a-~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP-E- 892 (961)
-|... .-|- +..+ -.+.++.+||....-+....+-.-...+||||||..-=... +
T Consensus 248 g~~VGYqvrl--------------~~~~--------s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~Df 305 (924)
T KOG0920|consen 248 GEEVGYQVRL--------------ESKR--------SRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDF 305 (924)
T ss_pred CCeeeEEEee--------------eccc--------CCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCccc
Confidence 11111 1000 0000 13357777776544333222333457999999998542222 2
Q ss_pred HHHHHhccc--cCCCeEEEE
Q 002130 893 TMIVLGNLA--NENTRVIVT 910 (961)
Q Consensus 893 aLIPLa~LA--~~~trVVLa 910 (961)
.||-+..+. .++=||||.
T Consensus 306 lLi~lk~lL~~~p~LkvILM 325 (924)
T KOG0920|consen 306 LLILLKDLLPRNPDLKVILM 325 (924)
T ss_pred HHHHHHHHhhhCCCceEEEe
Confidence 233333222 245578874
No 209
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.83 E-value=0.086 Score=53.28 Aligned_cols=48 Identities=27% Similarity=0.310 Sum_probs=31.1
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccc---cCCCeEEEEeC-CCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLA---NENTRVIVTGA-PHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA---~~~trVVLaGD-pkQLpPvV~S~ 923 (961)
+.+.++|||||-.+++. +.=+|...- ...+.+||+-+ +.+|.|+|+|.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR 152 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSKILPTIRSR 152 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh
Confidence 56889999999766654 434443222 24678887665 67799999885
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.82 E-value=0.011 Score=63.85 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecc
Q 002130 735 DSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 795 (961)
Q Consensus 735 N~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPS 795 (961)
++..++.++.++.. ....+++|.|||||||| ++|+++.+.+ ...-+.+++..
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT------~lA~~la~~l---g~~~~~i~~~~ 56 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKT------TLAMHVARKR---DRPVMLINGDA 56 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHH------HHHHHHHHHh---CCCEEEEeCCc
Confidence 45556666666543 22347899999999999 6777776533 23344454443
No 211
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.82 E-value=0.0055 Score=66.02 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=20.4
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
...+|++||||+||| |++.+|.+-+.
T Consensus 50 l~h~lf~GPPG~GKT------TLA~IIA~e~~ 75 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKT------TLARIIANELG 75 (233)
T ss_dssp --EEEEESSTTSSHH------HHHHHHHHHCT
T ss_pred cceEEEECCCccchh------HHHHHHHhccC
Confidence 345799999999999 88888877554
No 212
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.021 Score=68.61 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
++.-++.+...+.... ...+|++||+|+||| |++.++.+.+.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKT------tlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKT------STARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 4555555555554432 234699999999999 66666665553
No 213
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.77 E-value=0.012 Score=58.62 Aligned_cols=47 Identities=15% Similarity=-0.003 Sum_probs=33.0
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
++|.|||||||| ......+...++. +.++++.+.... ++.+++++..
T Consensus 2 ~li~G~~G~GKT-----~l~~~~~~~~~~~--g~~v~~~s~e~~-~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKT-----TFALQFLYAGLAR--GEPGLYVTLEES-PEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHH-----HHHHHHHHHHHHC--CCcEEEEECCCC-HHHHHHHHHH
Confidence 689999999999 5555666666654 778888876544 5555666543
No 214
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.76 E-value=0.017 Score=61.49 Aligned_cols=54 Identities=9% Similarity=-0.124 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
-|.....+++.+.......+++|+||+|+||| +++.++...+.. .+.+|+...-
T Consensus 28 ~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKT------hLl~a~~~~~~~-~~~~v~y~~~ 81 (235)
T PRK08084 28 DNDSLLAALQNALRQEHSGYIYLWSREGAGRS------HLLHAACAELSQ-RGRAVGYVPL 81 (235)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHH------HHHHHHHHHHHh-CCCeEEEEEH
Confidence 67777777777765444457899999999999 455554443333 3667776655
No 215
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.75 E-value=0.047 Score=56.66 Aligned_cols=36 Identities=3% Similarity=-0.100 Sum_probs=27.1
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
+.+.|++++|.||| +..+...++.+.+ +.+|+|+-.
T Consensus 6 Gli~v~~g~GkGKt-----t~a~g~a~ra~~~--g~~v~ivQF 41 (173)
T TIGR00708 6 GIIIVHTGNGKGKT-----TAAFGMALRALGH--GKKVGVIQF 41 (173)
T ss_pred cEEEEECCCCCChH-----HHHHHHHHHHHHC--CCeEEEEEE
Confidence 45789999999999 6655566665654 889998844
No 216
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.72 E-value=0.0049 Score=57.34 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=17.6
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+||+|||||||| ++++++.+.+
T Consensus 1 ill~G~~G~GKT------~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKT------TLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHH------HHHHHHHHHT
T ss_pred CEEECcCCCCee------HHHHHHHhhc
Confidence 489999999999 6667766654
No 217
>PRK13909 putative recombination protein RecB; Provisional
Probab=95.70 E-value=0.013 Score=73.79 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=42.3
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHHhh
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
++..+.||||| .+|+...+.++... ....||+.|.||.||.+|.+|+.+.
T Consensus 2 ~~~AsAGsGKT-----~~L~~~yl~ll~~~~~~~~IlavTFT~kAa~Emk~Ri~~~ 52 (910)
T PRK13909 2 ALKASAGSGKT-----FALSVRFLALLFKGANPSEILALTFTKKAANEMKERIIDT 52 (910)
T ss_pred ceecCCCCchh-----HHHHHHHHHHHhcCCCcceEEEEeehHHHHHHHHHHHHHH
Confidence 46789999999 99999888877642 2359999999999999999998874
No 218
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.68 E-value=0.077 Score=60.33 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=30.7
Q ss_pred CCCccEEEEecCCCCChHHHHHHHhcccc---CCCe-EEEEeCCCCCCccccCh
Q 002130 874 AGHFSHIFLIDASSATEPETMIVLGNLAN---ENTR-VIVTGAPHNSPSRVRSD 923 (961)
Q Consensus 874 ~g~FdhVIIDEASQAtEPEaLIPLa~LA~---~~tr-VVLaGDpkQLpPvV~S~ 923 (961)
.|.+.+||||||-.+++. +.-.|..... .... |++++++.+|.|.++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~-aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSR 191 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN-AANAILKTLEEPPARALFILISHSSGRLLPTIRSR 191 (351)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhcCCCCceEEEEECChhhccHHHHhh
Confidence 357889999999665543 3333332222 2234 45566788888998875
No 219
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.66 E-value=0.036 Score=57.19 Aligned_cols=58 Identities=10% Similarity=-0.025 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNR 797 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNs 797 (961)
.-|..-.++++.++......+++|+||+||||| +++.++...... .+..++.+.-++.
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT------~la~~~~~~~~~-~~~~~~~i~~~~~ 77 (226)
T TIGR03420 20 GGNAELLAALRQLAAGKGDRFLYLWGESGSGKS------HLLQAACAAAEE-RGKSAIYLPLAEL 77 (226)
T ss_pred CCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHH------HHHHHHHHHHHh-cCCcEEEEeHHHH
Confidence 345666666666654444567899999999999 455555443432 2455655544443
No 220
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.66 E-value=0.088 Score=60.18 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=30.9
Q ss_pred CCCccEEEEecCCCCChHHHHHHHhcccc---CCCeEEEEe-CCCCCCccccCh
Q 002130 874 AGHFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 874 ~g~FdhVIIDEASQAtEPEaLIPLa~LA~---~~trVVLaG-DpkQLpPvV~S~ 923 (961)
.+.+.+||||||-.+. +++.-.|..... ..+.+||+- ++.+|.|.|+|.
T Consensus 139 ~~~~kVviIDead~m~-~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SR 191 (365)
T PRK07471 139 EGGWRVVIVDTADEMN-ANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSR 191 (365)
T ss_pred cCCCEEEEEechHhcC-HHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhcc
Confidence 3568899999996555 554444443332 245566655 556888888764
No 221
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.012 Score=75.76 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=45.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhC---CCCeEEEEecchHHHHHHHHHHHhh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS---PKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~---p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
-.+|-.-.||||| .||++.+++++... .-.+|||+|+||+|+-+|.+|+.+.
T Consensus 18 ~~lveASAGSGKT-----~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 18 SVLVEASAGTGKT-----FVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred cEEEEEcCCCCch-----hHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 4699999999999 99999999988763 3459999999999999999999873
No 222
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=95.64 E-value=0.03 Score=69.05 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCC-CceEeccCCCCCCccchHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHH
Q 002130 727 CPYSNYKLDSDSNSAVHQILSFEGQS-PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLM 803 (961)
Q Consensus 727 ~~~~n~~LN~eQr~AV~~ILs~~~~~-P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--~p~~RILVcAPSNsAaD~Ll 803 (961)
..+......+.|..|+..++...... .++|.+|.|.||| ...+......+.. ....||+.+-|..++++.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT-----~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~ 263 (733)
T COG1203 189 KSFIEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKT-----EASLILALALLDEKIKLKSRVIYVLPFRTIIEDMY 263 (733)
T ss_pred ccccCchhhHHHHHHHHHHHhcccccccEEEEeCCCCChH-----HHHHHHHHHHhhccccccceEEEEccHHHHHHHHH
Confidence 33444556889999999999876555 8899999999999 4433333333332 24779999999999999999
Q ss_pred HHHHhh
Q 002130 804 ECLMKD 809 (961)
Q Consensus 804 eRL~~~ 809 (961)
+|+...
T Consensus 264 ~r~~~~ 269 (733)
T COG1203 264 RRAKEI 269 (733)
T ss_pred HHHHhh
Confidence 999873
No 223
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.64 E-value=0.01 Score=57.07 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=18.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++||+|||||||| ++++.+.+++
T Consensus 1 ~vlL~G~~G~GKt------~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKT------TLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHH------HHHHHHHHHH
T ss_pred CEEEECCCCCCHH------HHHHHHHHHh
Confidence 4799999999999 6677776666
No 224
>PRK12377 putative replication protein; Provisional
Probab=95.61 E-value=0.037 Score=60.16 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHhc-----cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 735 DSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 735 N~eQr~AV~~ILs~-----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
++.|+.|+..+..- .....++|+|||||||| + |+.+|...+.. .+..|++.
T Consensus 80 ~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKT-----h-La~AIa~~l~~-~g~~v~~i 135 (248)
T PRK12377 80 NDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKN-----H-LAAAIGNRLLA-KGRSVIVV 135 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHH-----H-HHHHHHHHHHH-cCCCeEEE
Confidence 56676666544321 12245799999999999 4 44454444433 35666444
No 225
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.59 E-value=0.022 Score=65.31 Aligned_cols=158 Identities=9% Similarity=0.045 Sum_probs=95.2
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
....-|++|+=.+|++++ ++.-.-.|+|||. ..+.-++..++......+.||.|||..-|-+|.+-.-. ++.
T Consensus 83 ~PT~IQ~~aiP~~L~g~d---vIglAeTGSGKT~----afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~-Lg~ 154 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALGGRD---VIGLAETGSGKTG----AFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEA-LGS 154 (476)
T ss_pred CCchhhhhhcchhhCCCc---EEEEeccCCCchh----hhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHH-hcc
Confidence 457789999999998863 5788899999992 22333444556554557999999999999999887654 222
Q ss_pred CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh-hh-ccCCCCCCccEEEEecCCCCCh
Q 002130 813 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LH-NQGITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 813 ~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~-L~-~~~~~~g~FdhVIIDEASQAtE 890 (961)
.--+|+.. -+..++-... ......+-.|||+|..-... +. ..+|.-....|+|+|||-..++
T Consensus 155 ~iglr~~~---lvGG~~m~~q-------------~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd 218 (476)
T KOG0330|consen 155 GIGLRVAV---LVGGMDMMLQ-------------ANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLD 218 (476)
T ss_pred ccCeEEEE---EecCchHHHH-------------HHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhh
Confidence 22222211 0111221111 11223456788888754322 22 2334444678899999987765
Q ss_pred HHHHHHHhcc---ccCCCeEEEEeCCC
Q 002130 891 PETMIVLGNL---ANENTRVIVTGAPH 914 (961)
Q Consensus 891 PEaLIPLa~L---A~~~trVVLaGDpk 914 (961)
-+-.--|-.+ .....+.+|++-.|
T Consensus 219 ~dF~~~ld~ILk~ip~erqt~LfsATM 245 (476)
T KOG0330|consen 219 MDFEEELDYILKVIPRERQTFLFSATM 245 (476)
T ss_pred hhhHHHHHHHHHhcCccceEEEEEeec
Confidence 5332222211 13678899988654
No 226
>PRK06893 DNA replication initiation factor; Validated
Probab=95.58 E-value=0.034 Score=58.96 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=21.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHH-HHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVL-QIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIl-QLlk~~p~~RILVcA 793 (961)
.++|+|||||||| +++.+|. ++.+. +.++....
T Consensus 41 ~l~l~G~~G~GKT------hL~~ai~~~~~~~--~~~~~y~~ 74 (229)
T PRK06893 41 FFYIWGGKSSGKS------HLLKAVSNHYLLN--QRTAIYIP 74 (229)
T ss_pred eEEEECCCCCCHH------HHHHHHHHHHHHc--CCCeEEee
Confidence 4689999999999 4455554 44443 44554443
No 227
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.54 E-value=0.064 Score=57.80 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=29.2
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHhCCC-CeEEEEecchHHHHHHHH
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK-SRILICAPWNRTCDKLME 804 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~-~RILVcAPSNsAaD~Lle 804 (961)
||.|++|.||| ++++..+...+...++ .+|+++.....|.+.+..
T Consensus 1 ~i~~~r~~GKT-----~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 46 (384)
T PF03237_consen 1 LINGGRGSGKT-----TLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGR 46 (384)
T ss_dssp -EEE-SSS-HH-----HHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHH
T ss_pred CCcCCccccHH-----HHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHH
Confidence 58899999999 7766655555544554 788888667777776555
No 228
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.51 E-value=0.058 Score=63.58 Aligned_cols=129 Identities=9% Similarity=0.086 Sum_probs=78.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhC--CCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSD 830 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~--p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~ 830 (961)
-++|-.|.|+||||+ .+-=|.|++... +.-|-+|.-|+..-+-++..-+.....+..+. |..+.. ...+..
T Consensus 185 DIcV~ApTGSGKTLa-----Y~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~-V~~~sg-q~sl~~ 257 (620)
T KOG0350|consen 185 DICVNAPTGSGKTLA-----YVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLA-VCSLSG-QNSLED 257 (620)
T ss_pred ceEEecCCCCCceee-----ehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceE-EEeccc-ccchHH
Confidence 358999999999943 233356666543 23578899999988888877776554554444 554432 233444
Q ss_pred HHHHhhhhcccccCCChhhhhccceEEEEeeccc-hhhh-ccCCCCCCccEEEEecCCCCChH--HHHHHHh
Q 002130 831 EIFQVSLVERECFSCPPLEELRQYKVISSTFVSS-FRLH-NQGITAGHFSHIFLIDASSATEP--ETMIVLG 898 (961)
Q Consensus 831 ~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssa-g~L~-~~~~~~g~FdhVIIDEASQAtEP--EaLIPLa 898 (961)
+..+...... ...++|+|+|..-. .++. ..+|.-.|..++|||||-..+.- +-|++..
T Consensus 258 E~~qL~~~~~----------~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v 319 (620)
T KOG0350|consen 258 EARQLASDPP----------ECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTV 319 (620)
T ss_pred HHHHHhcCCC----------ccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHH
Confidence 5444333221 13678999987422 1122 12344457888999999876654 4455554
No 229
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.47 E-value=0.15 Score=59.53 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=27.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEE-EEecch
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL-ICAPWN 796 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RIL-VcAPSN 796 (961)
.++|.||.|+||| +|++.++..+.....+.+|+ |++.+.
T Consensus 223 ~i~~vGptGvGKT-----Tt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 223 VVALVGPTGVGKT-----TTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 5788899999999 88888777665222355665 445453
No 230
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.45 E-value=0.026 Score=65.13 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=29.5
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
...+.+.||.|-||| +|||.+..+........+|-+.|
T Consensus 203 ~~vi~LVGPTGVGKT-----TTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKT-----TTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHH-----HHHHHHHHHHHhhccCcceEEEE
Confidence 457889999999999 99999988877334466775554
No 231
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.048 Score=64.84 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=19.1
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
..+|++|||||||| |++.++...+.
T Consensus 44 ~a~Lf~Gp~G~GKT------T~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKT------TSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHH------HHHHHHHHHhc
Confidence 46899999999999 56666655443
No 232
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.29 E-value=0.036 Score=61.54 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHhc----cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 735 N~eQr~AV~~ILs~----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
-++|.+++...|.. .....++|+|||||||| .++-.++.++.
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT-----~l~~~~~~~l~ 65 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKT-----AVTKYVMKELE 65 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHH-----HHHHHHHHHHH
Confidence 57788777777753 23446899999999999 55544444443
No 233
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.28 E-value=0.067 Score=60.70 Aligned_cols=133 Identities=12% Similarity=0.135 Sum_probs=71.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhC-CCCeEEEEecchH-HHHHHHHHHHhhCCCCceEecccccccccCccH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNR-TCDKLMECLMKDIPASEMFRANAAFREADGVSD 830 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-p~~RILVcAPSNs-AaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~ 830 (961)
..++.|.-|+||| .+++..+...+... ++.++|++.++.. ..+.+...|...+....+-....
T Consensus 3 ~~i~~GgrgSGKS-----~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~---------- 67 (396)
T TIGR01547 3 EIIAKGGRRSGKT-----FAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFK---------- 67 (396)
T ss_pred eEEEeCCCCcccH-----HHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhhee----------
Confidence 3578999999999 66665544444333 6899999999877 55566666654322111100000
Q ss_pred HHHHhhhhcccccCCChhhhhc-cceEEEEee-ccchhhhccCCCCC-CccEEEEecCCCCChHHHHHHHhccccCCCe-
Q 002130 831 EIFQVSLVERECFSCPPLEELR-QYKVISSTF-VSSFRLHNQGITAG-HFSHIFLIDASSATEPETMIVLGNLANENTR- 906 (961)
Q Consensus 831 ~I~~y~~~~~~~F~~p~~e~L~-~~rVVvtT~-ssag~L~~~~~~~g-~FdhVIIDEASQAtEPEaLIPLa~LA~~~tr- 906 (961)
.....+ ...... ...|++..+ .....+ ..+ .++.++||||++..+-..-.-+..+...+.+
T Consensus 68 -------~~~~~~---~i~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~~~~~~l~~rlr~~~~~~ 132 (396)
T TIGR01547 68 -------KSKSSM---EIKILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTFEDIKELIPRLRETGGKK 132 (396)
T ss_pred -------ecCCcc---EEEecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcCHHHHHHHHHHhhccCCcc
Confidence 000000 000011 345666655 222222 222 3699999999998765322222223322333
Q ss_pred -EEEEeCCCC
Q 002130 907 -VIVTGAPHN 915 (961)
Q Consensus 907 -VVLaGDpkQ 915 (961)
+++..=|..
T Consensus 133 ~i~~t~NP~~ 142 (396)
T TIGR01547 133 FIIFSSNPES 142 (396)
T ss_pred EEEEEcCcCC
Confidence 888877755
No 234
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.26 E-value=0.034 Score=58.06 Aligned_cols=53 Identities=6% Similarity=-0.053 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 733 KLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.-|.....++...... ....+++|+||+||||| +++.+|...... .+.++.+.
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT------~La~ai~~~~~~-~~~~~~~i 76 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRS------HLLQALVADASY-GGRNARYL 76 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHH------HHHHHHHHHHHh-CCCcEEEE
Confidence 4577777777776553 23457999999999999 566666554433 24444443
No 235
>PRK10867 signal recognition particle protein; Provisional
Probab=95.26 E-value=0.12 Score=60.57 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=29.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeE-EEEecchHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI-LICAPWNRTC 799 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RI-LVcAPSNsAa 799 (961)
.+++.|++|+||| +|++.++..+.+. .+.+| ||++-+..++
T Consensus 102 vI~~vG~~GsGKT-----TtaakLA~~l~~~-~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 102 VIMMVGLQGAGKT-----TTAGKLAKYLKKK-KKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHHh-cCCcEEEEEccccchH
Confidence 4578899999999 8888888766553 35555 4566665543
No 236
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.25 E-value=0.028 Score=55.45 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhc---cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 736 SDSNSAVHQILSF---EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 736 ~eQr~AV~~ILs~---~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
++|.+.+...|.. .....++|+|++|+||| +++.+++.++.+.
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT-----~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKT-----SLLRALLDRLAER 51 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHH-----HHHHHHHHHHHhc
Confidence 5678888888842 12456899999999999 6666655555444
No 237
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.011 Score=66.66 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=20.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
..|++|||||||| +++.++.|-+.
T Consensus 179 liLlhGPPGTGKT------SLCKaLaQkLS 202 (423)
T KOG0744|consen 179 LILLHGPPGTGKT------SLCKALAQKLS 202 (423)
T ss_pred EEEEeCCCCCChh------HHHHHHHHhhe
Confidence 5799999999999 78888888653
No 238
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.23 E-value=0.06 Score=60.61 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcccc--CCCeEEEEeC-CCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTGA-PHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~--~~trVVLaGD-pkQLpPvV~S~ 923 (961)
+.+.+||||||-.+++..+=-=|..|=. ..+.+||+-+ +.+|.|+|+|.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR 156 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR 156 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh
Confidence 5688999999987776533222222211 3567777665 57999999875
No 239
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=95.18 E-value=0.044 Score=67.18 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHHh--ccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILS--FEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs--~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|-+.|.--|.-.+- ..+ .+ |+---=|-||| .-++..+..+.+......=||++|+- ..++-+..+.+
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l~g--ILADEMGLGKT-----iQvIaFlayLkq~g~~gpHLVVvPsS-TleNWlrEf~k 469 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKLNG--ILADEMGLGKT-----IQVIAFLAYLKQIGNPGPHLVVVPSS-TLENWLREFAK 469 (941)
T ss_pred CcccchhhhhHHHHHHHHHccccc--eehhhccCcch-----hHHHHHHHHHHHcCCCCCcEEEecch-hHHHHHHHHHH
Confidence 4577888877765432 111 22 56667899999 44444444444443344567777764 56777777887
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-cc-CCCCCCccEEEEecCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQ-GITAGHFSHIFLIDAS 886 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~-~~~~g~FdhVIIDEAS 886 (961)
.++..++.-.+....+.. +++...... -..++|+++|...++.-. .. -|+...|++||.||+.
T Consensus 470 wCPsl~Ve~YyGSq~ER~----~lR~~i~~~-----------~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgH 534 (941)
T KOG0389|consen 470 WCPSLKVEPYYGSQDERR----ELRERIKKN-----------KDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGH 534 (941)
T ss_pred hCCceEEEeccCcHHHHH----HHHHHHhcc-----------CCCccEEEEEeecccCChHHHHHHHhccccEEEecchh
Confidence 788777776665432221 122111110 136799999998775311 11 1244579999999996
Q ss_pred CCChH--HHHHHHhccccCCCeEEEEeCCCCC
Q 002130 887 SATEP--ETMIVLGNLANENTRVIVTGAPHNS 916 (961)
Q Consensus 887 QAtEP--EaLIPLa~LA~~~trVVLaGDpkQL 916 (961)
..-.. |-+--|..+ ...-|+.|.|=|-|=
T Consensus 535 mLKN~~SeRy~~LM~I-~An~RlLLTGTPLQN 565 (941)
T KOG0389|consen 535 MLKNRTSERYKHLMSI-NANFRLLLTGTPLQN 565 (941)
T ss_pred hhhccchHHHHHhccc-cccceEEeeCCcccc
Confidence 53322 222222222 256899999999883
No 240
>PRK08116 hypothetical protein; Validated
Probab=95.17 E-value=0.061 Score=58.80 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHH---hc-----cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 735 DSDSNSAVHQIL---SF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 735 N~eQr~AV~~IL---s~-----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
++.|..|+..+. .. .....++|+|++||||| +.+..++.++++. +.+|++..
T Consensus 90 ~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKT-----hLa~aia~~l~~~--~~~v~~~~ 149 (268)
T PRK08116 90 DKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKT-----YLAACIANELIEK--GVPVIFVN 149 (268)
T ss_pred ChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEE
Confidence 566666655443 21 12235899999999999 4444444444443 66666554
No 241
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.16 E-value=0.078 Score=62.08 Aligned_cols=46 Identities=11% Similarity=0.273 Sum_probs=27.5
Q ss_pred CCccEEEEecCCCCChHH--HHHHHhcccc--CCCeEEEEeC-CCCCCccccC
Q 002130 875 GHFSHIFLIDASSATEPE--TMIVLGNLAN--ENTRVIVTGA-PHNSPSRVRS 922 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPE--aLIPLa~LA~--~~trVVLaGD-pkQLpPvV~S 922 (961)
+.+.+||||||..++... .|+-. +-. ....+|++.+ .+.|-+.+++
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~--lEep~~~~~~Il~t~~~~kl~~tI~s 170 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKT--LEEPPQHVKFFLATTEIHKIPGTILS 170 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHH--hhcCCCCceEEEEeCChHhcchHHHH
Confidence 467889999997766532 23222 222 3567777764 4566665554
No 242
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=95.13 E-value=0.053 Score=67.98 Aligned_cols=123 Identities=12% Similarity=0.041 Sum_probs=69.2
Q ss_pred eEeccCCCCCCccchHHHHH-HHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHHH
Q 002130 755 LLEGPLCNNFVLSKTGNVVR-EAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIF 833 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLV-eaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I~ 833 (961)
|.+.+.|+||| .+.+ -++.+++ .+..|+|+|||..-|....+.+........ ++++.- ...++..-+
T Consensus 99 Iaem~TGeGKT-----L~a~Lpa~~~al---~G~~V~VvTpn~yLA~qd~e~m~~l~~~lG-Ltv~~i---~gg~~~~~r 166 (896)
T PRK13104 99 IAEMRTGEGKT-----LVATLPAYLNAI---SGRGVHIVTVNDYLAKRDSQWMKPIYEFLG-LTVGVI---YPDMSHKEK 166 (896)
T ss_pred cccccCCCCch-----HHHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEE---eCCCCHHHH
Confidence 57789999999 3322 2222222 367899999999888887777665221111 122110 111221111
Q ss_pred HhhhhcccccCCChhhhhccceEEEEeeccchh--hhcc-CCC-----CCCccEEEEecCCCCChHHHHHHHhccccCCC
Q 002130 834 QVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHNQ-GIT-----AGHFSHIFLIDASSATEPETMIVLGNLANENT 905 (961)
Q Consensus 834 ~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~~-~~~-----~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~t 905 (961)
.....++||++|..-.|. |... .+. ...|.++|||||-.++--|+ .+
T Consensus 167 ---------------~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeA----------rt 221 (896)
T PRK13104 167 ---------------QEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEA----------RT 221 (896)
T ss_pred ---------------HHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhcc----------CC
Confidence 112357899999877532 2221 121 24789999999977654444 35
Q ss_pred eEEEEeCCC
Q 002130 906 RVIVTGAPH 914 (961)
Q Consensus 906 rVVLaGDpk 914 (961)
-+|+.|-..
T Consensus 222 PLIISg~~~ 230 (896)
T PRK13104 222 PLIISGAAE 230 (896)
T ss_pred ceeeeCCCc
Confidence 556666443
No 243
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=95.08 E-value=0.14 Score=65.54 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHhc-cCCCC--ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSF-EGQSP--YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~-~~~~P--~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
...++.|..||+.|..- ....| =||+|-=|=||| -+.+.|+...+. .++.|.|.+||---|.+--+.+.+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKT-----EVAmRAAFkAV~--~GKQVAvLVPTTlLA~QHy~tFke 665 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKT-----EVAMRAAFKAVM--DGKQVAVLVPTTLLAQQHYETFKE 665 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHH-----HHHHHHHHHHhc--CCCeEEEEcccHHhHHHHHHHHHH
Confidence 45689999999999964 21122 399999999999 777777665554 489999999999999988888888
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEAS 886 (961)
++.+ -.+||.--+|.... ++....... -.-++.+|||+|-.- .+.++.-..--++||||=.
T Consensus 666 RF~~-fPV~I~~LSRF~s~--kE~~~il~~----------la~G~vDIvIGTHrL----L~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 666 RFAG-FPVRIEVLSRFRSA--KEQKEILKG----------LAEGKVDIVIGTHRL----LSKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred HhcC-CCeeEEEecccCCH--HHHHHHHHH----------HhcCCccEEEechHh----hCCCcEEecCCeEEEechh
Confidence 6643 34555554443321 111110000 001567899988643 3333333345569999963
No 244
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.0068 Score=68.90 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=25.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
=+|++|||||||| .+|.|++. +.++ ++-..+.-+|+++++.
T Consensus 187 GVLLYGPPGTGKT------LLAkAVA~----~T~A-----tFIrvvgSElVqKYiG 227 (406)
T COG1222 187 GVLLYGPPGTGKT------LLAKAVAN----QTDA-----TFIRVVGSELVQKYIG 227 (406)
T ss_pred ceEeeCCCCCcHH------HHHHHHHh----ccCc-----eEEEeccHHHHHHHhc
Confidence 3799999999999 56666653 2232 2223344567777654
No 245
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.02 E-value=0.029 Score=60.94 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhc-----cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 736 SDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 736 ~eQr~AV~~ILs~-----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+.+++.+..++.. .....++|+|||||||| +++.+|.+.+
T Consensus 10 ~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT------~la~~ia~~~ 54 (305)
T TIGR00635 10 EKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKT------TLAHIIANEM 54 (305)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHH------HHHHHHHHHh
Confidence 4455556666542 22346899999999999 5666655544
No 246
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.95 E-value=0.21 Score=59.70 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=18.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
-+||+|||||||| +++.++...+.
T Consensus 218 GILLyGPPGTGKT------~LAKAlA~eL~ 241 (512)
T TIGR03689 218 GVLLYGPPGCGKT------LIAKAVANSLA 241 (512)
T ss_pred ceEEECCCCCcHH------HHHHHHHHhhc
Confidence 4799999999999 56677665543
No 247
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=94.94 E-value=0.03 Score=63.12 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=26.5
Q ss_pred CccEEEEecCCCCChHHHHHHHhccc---cCCCeEEEEeCCCC
Q 002130 876 HFSHIFLIDASSATEPETMIVLGNLA---NENTRVIVTGAPHN 915 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPEaLIPLa~LA---~~~trVVLaGDpkQ 915 (961)
.|..||+|||- |+--.+=.+|.... +..+++++++-|-|
T Consensus 131 ~fKlvILDEAD-aMT~~AQnALRRviek~t~n~rF~ii~n~~~ 172 (360)
T KOG0990|consen 131 AFKLVILDEAD-AMTRDAQNALRRVIEKYTANTRFATISNPPQ 172 (360)
T ss_pred ceeEEEecchh-HhhHHHHHHHHHHHHHhccceEEEEeccChh
Confidence 58999999995 44444445555433 35689999998743
No 248
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.94 E-value=0.073 Score=64.76 Aligned_cols=162 Identities=18% Similarity=0.201 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHhccCCCC--ceEeccCCCCCCccchHHHHHHHHHHHHHhC--C-CCeEEEEecc---hHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSP--YLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--P-KSRILICAPW---NRTCDKLME 804 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P--~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~--p-~~RILVcAPS---NsAaD~Lle 804 (961)
.|=+.|++|+.-.+-.+..+| -++-.-=|-|||++++...+..-+.+-.... . ...-||.||- +.=.+++..
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW~~Ev~~ 404 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQWEAEVAR 404 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHHHHHHHH
Confidence 567889999998876542211 2677778999994333322222222222221 1 1247888883 223455555
Q ss_pred HHHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCC---------CCC
Q 002130 805 CLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGI---------TAG 875 (961)
Q Consensus 805 RL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~---------~~g 875 (961)
||.. ..+|++-. .+..++.....+|.+|+||++|..-...-..... ..-
T Consensus 405 rl~~-----n~LsV~~~-----------------HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I 462 (901)
T KOG4439|consen 405 RLEQ-----NALSVYLY-----------------HGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARI 462 (901)
T ss_pred HHhh-----cceEEEEe-----------------cCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHh
Confidence 5543 34444322 1222233345678999999999986654111000 112
Q ss_pred CccEEEEecCCCCChHH--HHHHHhccccCCCeEEEEeCCCCCC
Q 002130 876 HFSHIFLIDASSATEPE--TMIVLGNLANENTRVIVTGAPHNSP 917 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPE--aLIPLa~LA~~~trVVLaGDpkQLp 917 (961)
.+..||+|||.-+-... |-.+++.|+ ...|+.|.|-|-|=.
T Consensus 463 ~W~RVILDEAH~IrN~~tq~S~AVC~L~-a~~RWclTGTPiqNn 505 (901)
T KOG4439|consen 463 AWSRVILDEAHNIRNSNTQCSKAVCKLS-AKSRWCLTGTPIQNN 505 (901)
T ss_pred hHHHhhhhhhhhhcccchhHHHHHHHHh-hcceeecccCccccc
Confidence 47779999997655543 333444332 568999999987753
No 249
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=94.92 E-value=0.26 Score=61.20 Aligned_cols=165 Identities=10% Similarity=0.064 Sum_probs=91.1
Q ss_pred CCCCHHHHHHHHHHHhc---c----CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCC-----CeEEEEecchHHH
Q 002130 732 YKLDSDSNSAVHQILSF---E----GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK-----SRILICAPWNRTC 799 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~---~----~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~-----~RILVcAPSNsAa 799 (961)
..|-+.|++.|+.+-.+ . +..=.++-=-||+||| .-++..|.-++++.|+ .+.||+||+- -+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKT-----lq~IsflwtlLrq~P~~~~~~~k~lVV~P~s-Lv 310 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKT-----LQCISFIWTLLRQFPQAKPLINKPLVVAPSS-LV 310 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchH-----HHHHHHHHHHHHhCcCccccccccEEEccHH-HH
Confidence 46889999999987654 1 1112355567999999 7888888889999999 9999999953 22
Q ss_pred HHHHHHHHhh-C-CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCc
Q 002130 800 DKLMECLMKD-I-PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHF 877 (961)
Q Consensus 800 D~LleRL~~~-l-~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~F 877 (961)
.+-.+.+.+- . .....+++.....+ .--....+.......| ..-|.+-...++. .....+..+.+
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~---~w~~~~sil~~~~~~~---------~~~vli~sye~~~-~~~~~il~~~~ 377 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKS---SWIKLKSILFLGYKQF---------TTPVLIISYETAS-DYCRKILLIRP 377 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccch---hhhhhHHHHHhhhhhe---------eEEEEeccHHHHH-HHHHHHhcCCC
Confidence 2222333321 1 12233444433222 0000001111111111 1112222222221 11222345689
Q ss_pred cEEEEecCCCCChHHH--HHHHhccccCCCeEEEEeCCCCC
Q 002130 878 SHIFLIDASSATEPET--MIVLGNLANENTRVIVTGAPHNS 916 (961)
Q Consensus 878 dhVIIDEASQAtEPEa--LIPLa~LA~~~trVVLaGDpkQL 916 (961)
+++|.||+..--.-+. +..|..+ ....||+|.|=+.|=
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l-~t~rRVLLSGTp~QN 417 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSL-KTPRRVLLTGTPIQN 417 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhc-CCCceEEeeCCcccc
Confidence 9999999977554444 4444432 356899999999884
No 250
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=94.91 E-value=0.11 Score=62.99 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=37.3
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..++|.|..|+||| +=|-..+...--. ...+|.++-|=..||-.+++|+...+
T Consensus 67 qvlIviGeTGsGKS-----TQipQyL~eaG~~-~~g~I~~TQPRRVAavslA~RVAeE~ 119 (674)
T KOG0922|consen 67 QVLIVIGETGSGKS-----TQIPQYLAEAGFA-SSGKIACTQPRRVAAVSLAKRVAEEM 119 (674)
T ss_pred CEEEEEcCCCCCcc-----ccHhHHHHhcccc-cCCcEEeecCchHHHHHHHHHHHHHh
Confidence 36899999999999 4443322211111 23348888899999999999999843
No 251
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.90 E-value=0.026 Score=62.71 Aligned_cols=49 Identities=20% Similarity=0.135 Sum_probs=37.8
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+++|.|||||||| ++++.+.+.+. .....+-|++.-.+.|.+=.-...
T Consensus 44 ~~vll~G~PG~gKT------~la~~lA~~l~--~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 44 GHVLLEGPPGVGKT------LLARALARALG--LPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred CCEEEECCCCccHH------HHHHHHHHHhC--CCeEEEecCCCCCHHHhcCchhHh
Confidence 37899999999999 77888877776 366777788888888776555544
No 252
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=94.90 E-value=0.072 Score=65.34 Aligned_cols=161 Identities=12% Similarity=0.170 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHH-hCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk-~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..|-+.|.+-|.-.... ....--|+---=|-|||+ .||+-+.. +.. ..-...-||++|- +..++-+..+.+.
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTl----QtIs~l~y-l~~~~~~~GPfLVi~P~-StL~NW~~Ef~rf 239 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTL----QTISLLGY-LKGRKGIPGPFLVIAPK-STLDNWMNEFKRF 239 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHH----HHHHHHHH-HHHhcCCCCCeEEEeeH-hhHHHHHHHHHHh
Confidence 45677787777765543 110012566678999993 34443322 222 2335578888883 5677888888887
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
.+....+++.....+...+-. +.+. + ..+.|++||.-.+-+-.. -+..-.+.+||||||...-
T Consensus 240 ~P~l~~~~~~Gdk~eR~~~~r----------~~~~-~-----~~fdV~iTsYEi~i~dk~-~lk~~~W~ylvIDEaHRiK 302 (971)
T KOG0385|consen 240 TPSLNVVVYHGDKEERAALRR----------DIML-P-----GRFDVCITSYEIAIKDKS-FLKKFNWRYLVIDEAHRIK 302 (971)
T ss_pred CCCcceEEEeCCHHHHHHHHH----------Hhhc-c-----CCCceEeehHHHHHhhHH-HHhcCCceEEEechhhhhc
Confidence 777777777653211111111 1110 0 256889998877743211 1234478999999999988
Q ss_pred hHHHHHHHh-ccccCCCeEEEEeCCCC
Q 002130 890 EPETMIVLG-NLANENTRVIVTGAPHN 915 (961)
Q Consensus 890 EPEaLIPLa-~LA~~~trVVLaGDpkQ 915 (961)
...+++--. .......|+.|.|-|-|
T Consensus 303 N~~s~L~~~lr~f~~~nrLLlTGTPLQ 329 (971)
T KOG0385|consen 303 NEKSKLSKILREFKTDNRLLLTGTPLQ 329 (971)
T ss_pred chhhHHHHHHHHhcccceeEeeCCccc
Confidence 777654321 11235689999999998
No 253
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=94.90 E-value=0.16 Score=56.15 Aligned_cols=41 Identities=2% Similarity=-0.052 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHhcc-CCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 735 N~eQr~AV~~ILs~~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++.+++.+...+... -+..||+.||.|+||| +++.++.+.+
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~------~la~~~a~~l 50 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKS------LLAKEIALKI 50 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHH------HHHHHHHHHH
Confidence 455566666666543 3446799999999999 5666655544
No 254
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.89 E-value=0.1 Score=61.70 Aligned_cols=38 Identities=8% Similarity=0.261 Sum_probs=23.5
Q ss_pred HHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 739 NSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 739 r~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
...+...+.... ...||++||+|+||| |++.++...+.
T Consensus 25 ~~~L~~~i~~~~i~hayLf~Gp~G~GKT------tlAr~lAk~L~ 63 (486)
T PRK14953 25 VRILKNAVKLQRVSHAYIFAGPRGTGKT------TIARILAKVLN 63 (486)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 334444444322 234789999999999 56666555443
No 255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.87 E-value=0.1 Score=58.28 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=34.2
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceE
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMF 816 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~il 816 (961)
...+|++||||.||| |++.+|..-+.- +.|+----.-+.+.|.+.- |. .+.+.+++
T Consensus 52 lDHvLl~GPPGlGKT------TLA~IIA~Emgv--n~k~tsGp~leK~gDlaai-Lt-~Le~~DVL 107 (332)
T COG2255 52 LDHVLLFGPPGLGKT------TLAHIIANELGV--NLKITSGPALEKPGDLAAI-LT-NLEEGDVL 107 (332)
T ss_pred cCeEEeeCCCCCcHH------HHHHHHHHHhcC--CeEecccccccChhhHHHH-Hh-cCCcCCeE
Confidence 457899999999999 888888765542 4444322233555555432 22 34444444
No 256
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.85 E-value=0.058 Score=55.53 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=28.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
-++|+|++||||| ...+.++..+++. +.+|+... +..|+++|.
T Consensus 49 ~l~l~G~~G~GKT-----hLa~ai~~~~~~~--g~~v~f~~-----~~~L~~~l~ 91 (178)
T PF01695_consen 49 NLILYGPPGTGKT-----HLAVAIANEAIRK--GYSVLFIT-----ASDLLDELK 91 (178)
T ss_dssp EEEEEESTTSSHH-----HHHHHHHHHHHHT--T--EEEEE-----HHHHHHHHH
T ss_pred EEEEEhhHhHHHH-----HHHHHHHHHhccC--CcceeEee-----cCceecccc
Confidence 4799999999999 6655555666663 77777765 344666665
No 257
>PHA02533 17 large terminase protein; Provisional
Probab=94.81 E-value=0.4 Score=57.56 Aligned_cols=148 Identities=8% Similarity=0.029 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|++.|+..+..+...+ ..+|.=+=..||| ++++..++......++..|+++|++-..|..+.+++...+.
T Consensus 58 f~L~p~Q~~i~~~~~~~R---~~ii~~aRq~GKS-----tl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNR---FNACNLSRQLGKT-----TVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred cCCcHHHHHHHHHHhcCe---EEEEEEcCcCChH-----HHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 368999999988864333 3367778899999 66554333333235678999999999999999988875221
Q ss_pred CCc-eEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCCh
Q 002130 812 ASE-MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 812 ~~~-ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtE 890 (961)
... +++... . ......... -...+|.+.|... . ..+..+++.++|||++....
T Consensus 130 ~~P~l~~~~i------------~---~~~~~~I~l-----~NGS~I~~lss~~-~-----t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 130 LLPDFLQPGI------------V---EWNKGSIEL-----ENGSKIGAYASSP-D-----AVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred hCHHHhhcce------------e---ecCccEEEe-----CCCCEEEEEeCCC-C-----ccCCCCCceEEEeccccCCC
Confidence 110 111000 0 000000000 1244554443321 1 12334688899999987655
Q ss_pred H----HHHHHHhccccCCCeEEEEeCCC
Q 002130 891 P----ETMIVLGNLANENTRVIVTGAPH 914 (961)
Q Consensus 891 P----EaLIPLa~LA~~~trVVLaGDpk 914 (961)
. ..+.|.. ......++++++=|.
T Consensus 184 ~~e~~~ai~p~l-asg~~~r~iiiSTp~ 210 (534)
T PHA02533 184 FIDFWLAIQPVI-SSGRSSKIIITSTPN 210 (534)
T ss_pred HHHHHHHHHHHH-HcCCCceEEEEECCC
Confidence 4 2555654 122346788877664
No 258
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.78 E-value=0.051 Score=63.18 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=30.7
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE-ecchH--HHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APWNR--TCDKLM 803 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc-APSNs--AaD~Ll 803 (961)
..++|.||.|+||| +|++.+..++..+ +.+|+++ +-+.. |++.+.
T Consensus 242 ~vI~LVGptGvGKT-----TTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk 289 (436)
T PRK11889 242 QTIALIGPTGVGKT-----TTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQ 289 (436)
T ss_pred cEEEEECCCCCcHH-----HHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHH
Confidence 35689999999999 8888887776543 6666554 44443 444443
No 259
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=94.74 E-value=0.075 Score=63.28 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh----CCCCeEEEEecchHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----SPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~----~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
..+.+-|+++|-.+|.+.+ +|=-.-.|+||||.+ |+-.+-.+++. ..|-..||.+||..-|-.+.+-|.
T Consensus 90 v~~teiQ~~~Ip~aL~G~D---vlGAAkTGSGKTLAF----lvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~ 162 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGHD---VLGAAKTGSGKTLAF----LVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLN 162 (758)
T ss_pred ccHHHHHHhhcchhccCcc---cccccccCCCceeee----hHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHH
Confidence 3678999999999998863 233345799999643 34444445543 357789999999999988888776
Q ss_pred hh---CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhh-hcc----CCCCCCccE
Q 002130 808 KD---IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HNQ----GITAGHFSH 879 (961)
Q Consensus 808 ~~---l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L-~~~----~~~~g~Fdh 879 (961)
+. ..-..-+=+|.. ++. -..+.+.+.+|+|||.. +| .++ .|......+
T Consensus 163 kvgk~h~fSaGLiiGG~-----~~k----------------~E~eRi~~mNILVCTPG---RLLQHmde~~~f~t~~lQm 218 (758)
T KOG0343|consen 163 KVGKHHDFSAGLIIGGK-----DVK----------------FELERISQMNILVCTPG---RLLQHMDENPNFSTSNLQM 218 (758)
T ss_pred HHhhccccccceeecCc-----hhH----------------HHHHhhhcCCeEEechH---HHHHHhhhcCCCCCCcceE
Confidence 51 000011111111 011 12345678899999874 43 233 233345778
Q ss_pred EEEecCCCCChH
Q 002130 880 IFLIDASSATEP 891 (961)
Q Consensus 880 VIIDEASQAtEP 891 (961)
+|+|||-.+++-
T Consensus 219 LvLDEADR~LDM 230 (758)
T KOG0343|consen 219 LVLDEADRMLDM 230 (758)
T ss_pred EEeccHHHHHHH
Confidence 999999887765
No 260
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.73 E-value=0.06 Score=58.50 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHhc----cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 734 LDSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 734 LN~eQr~AV~~ILs~----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.+..++.|+..+... ....-+++.|||||||| ..++.+...+++ .+.+|++.+-
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKT-----hLa~Ai~~~l~~--~g~sv~f~~~ 141 (254)
T COG1484 84 QPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKT-----HLAIAIGNELLK--AGISVLFITA 141 (254)
T ss_pred CcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHH-----HHHHHHHHHHHH--cCCeEEEEEH
Confidence 355677777766543 12234799999999999 666666666663 4788887754
No 261
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.73 E-value=0.018 Score=61.96 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=19.9
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
..++++|||||||| +++.++...+.
T Consensus 43 ~~vll~GppGtGKT------tlA~~ia~~l~ 67 (261)
T TIGR02881 43 LHMIFKGNPGTGKT------TVARILGKLFK 67 (261)
T ss_pred ceEEEEcCCCCCHH------HHHHHHHHHHH
Confidence 45789999999999 67777766554
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.71 E-value=0.081 Score=58.11 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=26.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.++|.||.|+||| +|++.++..+.....+.+|.+++
T Consensus 196 vi~~vGptGvGKT-----Tt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 196 VIALVGPTGVGKT-----TTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHHHcCCCeEEEEE
Confidence 5678999999999 88888777665532346666554
No 263
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.68 E-value=0.11 Score=60.38 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHhccC--CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecc
Q 002130 735 DSDSNSAVHQILSFEG--QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 795 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~--~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPS 795 (961)
|..-..|++.+....+ ..+++|+||+||||| +.+..+..++.+..++.+|+..+..
T Consensus 130 n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKT-----hL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 130 NRLAHAAALAVAENPGKAYNPLFIYGGVGLGKT-----HLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred cHHHHHHHHHHHhCcCccCCeEEEECCCCCCHH-----HHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 4444555555544322 247899999999999 4443344444444456777766543
No 264
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.65 E-value=0.12 Score=61.40 Aligned_cols=131 Identities=16% Similarity=0.083 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-------CCCCeEEEEecchHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-------SPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-------~p~~RILVcAPSNsAaD~LleR 805 (961)
.+..-|++||=.+|.+++ ++|..+.|+|||| .-+-=|.|.+.. ..|.--||.+||..-|-.+-+-
T Consensus 159 ~pTsVQkq~IP~lL~grD---~lV~aQTGSGKTL-----AYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~ 230 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRD---ALVRAQTGSGKTL-----AYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYET 230 (708)
T ss_pred ccchHhhcchhhhhcCcc---eEEEcCCCCcccH-----HHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHH
Confidence 567889999999998763 6999999999992 222223333332 2345679999999877665444
Q ss_pred HHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhh-ccceEEEEeeccchhhhc-----cCCCCCCccE
Q 002130 806 LMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLHN-----QGITAGHFSH 879 (961)
Q Consensus 806 L~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L-~~~rVVvtT~ssag~L~~-----~~~~~g~Fdh 879 (961)
+-+.+.... |+ || ...+. +.-+--++..| ...+|+|+|.. +|.. ..|......|
T Consensus 231 ~qKLl~~~h---------WI--VP-----g~lmG-GEkkKSEKARLRKGiNILIgTPG---RLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 231 VQKLLKPFH---------WI--VP-----GVLMG-GEKKKSEKARLRKGINILIGTPG---RLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred HHHHhcCce---------EE--ee-----ceeec-ccccccHHHHHhcCceEEEcCch---HHHHHHhccchheeeeeeE
Confidence 433221110 00 11 11111 11111122333 36789998864 4331 1233335789
Q ss_pred EEEecCCCCChH
Q 002130 880 IFLIDASSATEP 891 (961)
Q Consensus 880 VIIDEASQAtEP 891 (961)
||+|||-..+|-
T Consensus 291 lVlDEaDrlleL 302 (708)
T KOG0348|consen 291 LVLDEADRLLEL 302 (708)
T ss_pred EEecchhHHHhc
Confidence 999999887764
No 265
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=94.57 E-value=0.078 Score=64.03 Aligned_cols=71 Identities=14% Similarity=0.218 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
...-+.|++.+..+-.. .+....+|++|.|||||+ .-|+-+|..... .+.+|+|+|.|+..-|.+.++...
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl----~yL~~al~~~~~--~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTL----AYLLPALAYARE--EGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHH----HHHHHHHHHHHH--cCCcEEEECCCHHHHHHHHHhhcc
Confidence 34568898888776643 223358999999999992 123333333332 368999999999999999998876
No 266
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.57 E-value=0.21 Score=58.42 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=26.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEE-EEecchH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL-ICAPWNR 797 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RIL-VcAPSNs 797 (961)
.+++.|++|+||| +|++.+...+.+ .+.+|+ |++-+..
T Consensus 102 vi~lvG~~GvGKT-----TtaaKLA~~l~~--~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKT-----TTCTKLAYYYQR--KGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHH--CCCCEEEEcCcccc
Confidence 5689999999999 888877765443 356655 5555544
No 267
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.56 E-value=0.12 Score=58.28 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=33.9
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccc---cCCCeEEEEeC-CCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLA---NENTRVIVTGA-PHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA---~~~trVVLaGD-pkQLpPvV~S~ 923 (961)
|.+.+||||||-.+++..+ =.|.... ...+.+||+.+ +.+|.|+|+|.
T Consensus 112 g~~kV~iI~~ae~m~~~Aa-NaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 112 GIAQVVIVDPADAINRAAC-NALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred CCcEEEEeccHhhhCHHHH-HHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 5688999999977776533 3332222 24678999888 68999999875
No 268
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.53 E-value=0.075 Score=66.78 Aligned_cols=35 Identities=20% Similarity=0.057 Sum_probs=24.0
Q ss_pred HHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 742 VHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 742 V~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
+..+|..+...-.||+||||+||| +||+.+.+.+.
T Consensus 199 ~i~~l~r~~~~n~lLvG~pGvGKT------al~~~La~~i~ 233 (852)
T TIGR03345 199 MIDILLRRRQNNPILTGEAGVGKT------AVVEGLALRIA 233 (852)
T ss_pred HHHHHhcCCcCceeEECCCCCCHH------HHHHHHHHHHh
Confidence 333444443233589999999999 77788777664
No 269
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.43 E-value=0.23 Score=59.20 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCC
Q 002130 736 SDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPAS 813 (961)
Q Consensus 736 ~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~ 813 (961)
-.|-+||+.++.+ .+.....+.|-.||||| .|++..|.++ +..-||.||...-|-+|...+.++++..
T Consensus 15 GDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKT-----fT~AnVI~~~-----~rPtLV~AhNKTLAaQLy~Efk~fFP~N 84 (663)
T COG0556 15 GDQPEAIAELVEGIENGLKHQTLLGVTGSGKT-----FTMANVIAKV-----QRPTLVLAHNKTLAAQLYSEFKEFFPEN 84 (663)
T ss_pred CCcHHHHHHHHHHHhcCceeeEEeeeccCCch-----hHHHHHHHHh-----CCCeEEEecchhHHHHHHHHHHHhCcCc
Confidence 4588899988865 23445689999999999 9999888764 5577999999999999999999988877
Q ss_pred ceEec
Q 002130 814 EMFRA 818 (961)
Q Consensus 814 ~ilRV 818 (961)
.+--+
T Consensus 85 aVEYF 89 (663)
T COG0556 85 AVEYF 89 (663)
T ss_pred ceEEE
Confidence 65443
No 270
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.40 E-value=0.19 Score=53.38 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=29.6
Q ss_pred ccEEEEecCCCCChHHHHHHHhccccC-CCeEEEEe
Q 002130 877 FSHIFLIDASSATEPETMIVLGNLANE-NTRVIVTG 911 (961)
Q Consensus 877 FdhVIIDEASQAtEPEaLIPLa~LA~~-~trVVLaG 911 (961)
+++|+|||| |=...+..--|..+++. +-.||+.|
T Consensus 83 ~~~v~IDEa-QF~~~~~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 83 VDCVLIDEA-QFFDEELVYVLNELADRLGIPVICYG 117 (201)
T ss_pred cCEEEEehh-HhCCHHHHHHHHHHHhhcCCEEEEec
Confidence 789999999 88888888888888887 77888888
No 271
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=94.30 E-value=0.12 Score=68.21 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=63.6
Q ss_pred EeccCCCCCCccchHHHHHHHHHHHHHhC----------CCCeEEEEecchHHHHHHHHHHHhhCCCC-----------c
Q 002130 756 LEGPLCNNFVLSKTGNVVREAVLQIRRRS----------PKSRILICAPWNRTCDKLMECLMKDIPAS-----------E 814 (961)
Q Consensus 756 I~GPPGTGKTls~~g~TLVeaIlQLlk~~----------p~~RILVcAPSNsAaD~LleRL~~~l~~~-----------~ 814 (961)
|..|.|+|||++ .+.-+|.+++... .+.++|+.+|+..-+..+.++|...+.+. .
T Consensus 1 V~APTGSGKTLA----A~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~ 76 (1490)
T PRK09751 1 VIAPTGSGKTLA----AFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEV 76 (1490)
T ss_pred CcCCCCcHHHHH----HHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccC
Confidence 467999999921 1222444555431 25799999999999999988875421110 0
Q ss_pred eEecccccccccCccHHHHHhhhhcccccCCChhhhh-ccceEEEEeeccchhhhccCC--CCCCccEEEEecCCCCCh
Q 002130 815 MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLHNQGI--TAGHFSHIFLIDASSATE 890 (961)
Q Consensus 815 ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L-~~~rVVvtT~ssag~L~~~~~--~~g~FdhVIIDEASQAtE 890 (961)
-++++... .+.+.+-+ ...+ ....|||+|......+..... .-...++|||||+....+
T Consensus 77 ~i~V~vrt---GDt~~~eR--------------~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g 138 (1490)
T PRK09751 77 NLRVGIRT---GDTPAQER--------------SKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAG 138 (1490)
T ss_pred ceEEEEEE---CCCCHHHH--------------HHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcc
Confidence 12221110 11111100 0112 246899999987754322111 124689999999966554
No 272
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.29 E-value=0.062 Score=63.22 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=30.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 727 CPYSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 727 ~~~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
..|.+....+.+++.+..++.. ..+.-+||+|||||||| +++.+|..
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT------~la~alA~ 110 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKT------LLAKAVAG 110 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHH------HHHHHHHH
Confidence 3444455667777766665541 11223799999999999 56666654
No 273
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.25 E-value=0.083 Score=60.51 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=22.7
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
..+++|.||||+||| |++++++..+..
T Consensus 78 r~il~L~GPPGsGKS------tla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGPVGGGKS------SLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECCCCCCHH------HHHHHHHHHHhh
Confidence 357899999999999 888888877765
No 274
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.22 E-value=0.026 Score=61.98 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=20.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
+++|+|||||||| ++|.++.+.+..
T Consensus 60 ~vll~G~pGTGKT------~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKT------TVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHH------HHHHHHHHHHHH
Confidence 6899999999999 777777766654
No 275
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.22 E-value=0.3 Score=57.22 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=28.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeE-EEEecchHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI-LICAPWNRT 798 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RI-LVcAPSNsA 798 (961)
.+++.|++|+||| +|++.++..+... .+.+| ||++-+..+
T Consensus 101 vi~~vG~~GsGKT-----TtaakLA~~l~~~-~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKT-----TTCGKLAYYLKKK-QGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHHh-CCCeEEEEeccccch
Confidence 4678999999999 8888888776533 25555 556666543
No 276
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.20 E-value=0.12 Score=61.39 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=19.1
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..+|++|||||||| .++.+|...+
T Consensus 260 kGILL~GPpGTGKT------llAkaiA~e~ 283 (489)
T CHL00195 260 RGLLLVGIQGTGKS------LTAKAIANDW 283 (489)
T ss_pred ceEEEECCCCCcHH------HHHHHHHHHh
Confidence 35899999999999 6667776644
No 277
>PRK09183 transposase/IS protein; Provisional
Probab=94.18 E-value=0.07 Score=57.98 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..+|..|...+..+---.....++|+||+||||| +++.+|...+.. .+.+|+...
T Consensus 83 ~~~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKT------hLa~al~~~a~~-~G~~v~~~~ 137 (259)
T PRK09183 83 TGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKT------HLAIALGYEAVR-AGIKVRFTT 137 (259)
T ss_pred CCCCHHHHHHHhcCCchhcCCeEEEEeCCCCCHH------HHHHHHHHHHHH-cCCeEEEEe
Confidence 5678887777654311111225789999999999 455555433322 367787664
No 278
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.17 E-value=0.047 Score=60.64 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHhc-----cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 734 LN~eQr~AV~~ILs~-----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..+..++++..++.. .....++|+|||||||| +++.++...+
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT------~la~~ia~~l 75 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKT------TLANIIANEM 75 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHH------HHHHHHHHHh
Confidence 456666666665542 22356899999999999 5666665544
No 279
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.16 E-value=0.052 Score=62.18 Aligned_cols=59 Identities=8% Similarity=0.155 Sum_probs=34.3
Q ss_pred HHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHH
Q 002130 738 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLM 803 (961)
Q Consensus 738 Qr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~Ll 803 (961)
|.--++..+.....+-+++||||||||| ||+.+|..--+. +.-|.+-..-||+-+..+.
T Consensus 149 q~gllrs~ieq~~ipSmIlWGppG~GKT------tlArlia~tsk~-~SyrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 149 QDGLLRSLIEQNRIPSMILWGPPGTGKT------TLARLIASTSKK-HSYRFVELSATNAKTNDVR 207 (554)
T ss_pred cchHHHHHHHcCCCCceEEecCCCCchH------HHHHHHHhhcCC-CceEEEEEeccccchHHHH
Confidence 3444555554433456789999999999 777776543332 2234444444555444443
No 280
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.15 E-value=0.52 Score=57.94 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=75.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC---CceEecccccccccCccH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA---SEMFRANAAFREADGVSD 830 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~---~~ilRV~a~sR~~~~V~~ 830 (961)
.++.=|=-.||| ..|+-.|.-++...++.+|+++||...+++.+.+++...+.. .+++|...
T Consensus 257 tVflVPRR~GKT-----wivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk---------- 321 (738)
T PHA03368 257 TVFLVPRRHGKT-----WFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK---------- 321 (738)
T ss_pred eEEEecccCCch-----hhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec----------
Confidence 456667889999 666644444555567999999999999999999999874321 11121110
Q ss_pred HHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChH--HHHHHHhccccCCCeEE
Q 002130 831 EIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP--ETMIVLGNLANENTRVI 908 (961)
Q Consensus 831 ~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP--EaLIPLa~LA~~~trVV 908 (961)
.+.-.|..+. -.+.+|.+.+|... ...+...||.+|||||.-...- ++++|+. +..++++|
T Consensus 322 -------Ge~I~i~f~n---G~kstI~FaSarnt-----NsiRGqtfDLLIVDEAqFIk~~al~~ilp~l--~~~n~k~I 384 (738)
T PHA03368 322 -------GETISFSFPD---GSRSTIVFASSHNT-----NGIRGQDFNLLFVDEANFIRPDAVQTIMGFL--NQTNCKII 384 (738)
T ss_pred -------CcEEEEEecC---CCccEEEEEeccCC-----CCccCCcccEEEEechhhCCHHHHHHHHHHH--hccCccEE
Confidence 0000011110 01235666544221 1123347999999999655543 4455654 34578888
Q ss_pred EEeCC
Q 002130 909 VTGAP 913 (961)
Q Consensus 909 LaGDp 913 (961)
++.-+
T Consensus 385 ~ISS~ 389 (738)
T PHA03368 385 FVSST 389 (738)
T ss_pred EEecC
Confidence 87644
No 281
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.10 E-value=0.079 Score=56.82 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=41.1
Q ss_pred HHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHH
Q 002130 743 HQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 743 ~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleR 805 (961)
..+|.+ .....++|.|+|||||| ....+.+.+.++. +.+++..+-.-.+.+.+...
T Consensus 13 D~~l~GG~p~g~~~lI~G~pGsGKT-----~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~ 70 (260)
T COG0467 13 DEILGGGLPRGSVVLITGPPGTGKT-----IFALQFLYEGARE--GEPVLYVSTEESPEELLENA 70 (260)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCcHH-----HHHHHHHHHHHhc--CCcEEEEEecCCHHHHHHHH
Confidence 345543 22347899999999999 7777777777775 88888888877776665544
No 282
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=94.08 E-value=0.23 Score=61.33 Aligned_cols=170 Identities=12% Similarity=0.101 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|=+.|+.-|+-...- .+.+ =||=--=|-||| .-++..+..+... .-..++||+||.-.-. +-+..+..
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~G-GILgDeMGLGKT-----IQiisFLaaL~~S~k~~~paLIVCP~Tii~-qW~~E~~~ 276 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAG-GILGDEMGLGKT-----IQIISFLAALHHSGKLTKPALIVCPATIIH-QWMKEFQT 276 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCC-CeecccccCccc-----hhHHHHHHHHhhcccccCceEEEccHHHHH-HHHHHHHH
Confidence 46788999999987642 2111 145556799999 5566555555543 2346889999954322 22333333
Q ss_pred hCCCCceEeccccccccc-CccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCC
Q 002130 809 DIPASEMFRANAAFREAD-GVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 887 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~-~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQ 887 (961)
-.+..+++=++...+... ........+.. .-...+.....|+++|..... +....+....+++||+||+..
T Consensus 277 w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~-------~L~r~~~~~~~ilitty~~~r-~~~d~l~~~~W~y~ILDEGH~ 348 (923)
T KOG0387|consen 277 WWPPFRVFILHGTGSGARYDASHSSHKKDK-------LLIRKVATDGGILITTYDGFR-IQGDDLLGILWDYVILDEGHR 348 (923)
T ss_pred hCcceEEEEEecCCcccccccchhhhhhhh-------hheeeecccCcEEEEehhhhc-ccCcccccccccEEEecCccc
Confidence 233333332322221100 00000000000 000112234567777776542 233334455799999999999
Q ss_pred CChHHHHHHHhccc-cCCCeEEEEeCCCCC
Q 002130 888 ATEPETMIVLGNLA-NENTRVIVTGAPHNS 916 (961)
Q Consensus 888 AtEPEaLIPLa~LA-~~~trVVLaGDpkQL 916 (961)
+-.|.+=|.|++.- ....||||.|-|.|=
T Consensus 349 IrNpns~islackki~T~~RiILSGTPiQN 378 (923)
T KOG0387|consen 349 IRNPNSKISLACKKIRTVHRIILSGTPIQN 378 (923)
T ss_pred ccCCccHHHHHHHhccccceEEeeCccccc
Confidence 99998888887442 345799999999885
No 283
>PRK08727 hypothetical protein; Validated
Probab=94.02 E-value=0.14 Score=54.59 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=23.9
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..+++|+||+||||| +.+..+..++.+. +.+++...
T Consensus 41 ~~~l~l~G~~G~GKT-----hL~~a~~~~~~~~--~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKT-----HLALALCAAAEQA--GRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHH-----HHHHHHHHHHHHc--CCcEEEEe
Confidence 346899999999999 4444444444433 56766655
No 284
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.01 E-value=0.12 Score=63.44 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHhcc--CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 734 LDSDSNSAVHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~--~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
-.-.|..|+..++.+- +....+|.|-.|+||| .|++.++.+ .+..+||.||....|+.|...|...++
T Consensus 10 ~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt-----~~~a~~~~~-----~~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 10 PAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKT-----FTMANVIAQ-----VNRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred CChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHH-----HHHHHHHHH-----hCCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 3567999999887652 2225579999999999 888876654 256899999999999999999988877
Q ss_pred CCceEec
Q 002130 812 ASEMFRA 818 (961)
Q Consensus 812 ~~~ilRV 818 (961)
...+..+
T Consensus 80 ~~~V~~f 86 (655)
T TIGR00631 80 ENAVEYF 86 (655)
T ss_pred CCeEEEE
Confidence 6555555
No 285
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.92 E-value=0.37 Score=54.26 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=25.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE-ecch
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APWN 796 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc-APSN 796 (961)
.++|.||+|.||| +|++.+...+.. .+.+|++. +.+.
T Consensus 116 vi~lvGpnGsGKT-----Tt~~kLA~~l~~--~g~~V~Li~~D~~ 153 (318)
T PRK10416 116 VILVVGVNGVGKT-----TTIGKLAHKYKA--QGKKVLLAAGDTF 153 (318)
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHh--cCCeEEEEecCcc
Confidence 4678899999999 777776665443 35677655 4443
No 286
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=0.27 Score=58.09 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=30.3
Q ss_pred CCce--EeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 752 SPYL--LEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 752 ~P~L--I~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.||+ +.|--|-||+ +.|+.+..++++. +.||||+|-
T Consensus 377 rPYVi~fvGVNGVGKS-----TNLAKIayWLlqN--kfrVLIAAC 414 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKS-----TNLAKIAYWLLQN--KFRVLIAAC 414 (587)
T ss_pred CCeEEEEEeecCcccc-----chHHHHHHHHHhC--CceEEEEec
Confidence 4554 5799999999 9999999998886 889999764
No 287
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.85 E-value=0.059 Score=63.86 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=26.4
Q ss_pred HHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 738 SNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 738 Qr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
|.++|+.++.. .....+||.|||||||| ++|.++.+...
T Consensus 25 re~vI~lll~aalag~hVLL~GpPGTGKT------~LAraLa~~~~ 64 (498)
T PRK13531 25 RSHAIRLCLLAALSGESVFLLGPPGIAKS------LIARRLKFAFQ 64 (498)
T ss_pred cHHHHHHHHHHHccCCCEEEECCCChhHH------HHHHHHHHHhc
Confidence 44445544432 12347899999999999 77777777654
No 288
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.84 E-value=0.067 Score=61.32 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCCCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 729 YSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
|.+...-++|++.+..++.. ..+.-+||+|||||||| +++.++..-+
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT------~lAkaia~~~ 189 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKT------LLAKAVAHET 189 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChH------HHHHHHHHHh
Confidence 33344456777777765421 11234799999999999 6677766543
No 289
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.81 E-value=0.17 Score=57.95 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=25.5
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.+++|+||+||||| +.+..+..++.+..++.+|+...
T Consensus 137 n~l~l~G~~G~GKT-----hL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKT-----HLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHH-----HHHHHHHHHHHHhCCCCcEEEEE
Confidence 47899999999999 44444444445544567777764
No 290
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.75 E-value=0.1 Score=58.81 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 791 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV 791 (961)
.++.+|.+.+..++..+. -+||.|++|+||| +++-.++..+....++.||++
T Consensus 128 ~~~~~~~~~L~~~v~~~~--nilI~G~tGSGKT-----Tll~aL~~~i~~~~~~~rivt 179 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRL--NIVISGGTGSGKT-----TLANAVIAEIVASAPEDRLVI 179 (323)
T ss_pred CCCHHHHHHHHHHHHcCC--eEEEECCCCCCHH-----HHHHHHHHHHhcCCCCceEEE
Confidence 478899999998887654 3699999999999 555444444433334566655
No 291
>PHA00350 putative assembly protein
Probab=93.71 E-value=0.21 Score=57.93 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=30.6
Q ss_pred CceEeccCCCCCCccchHHHHHH-HHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC-CCceEeccc
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVRE-AVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP-ASEMFRANA 820 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVe-aIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~-~~~ilRV~a 820 (961)
.++|.|.||+||| ...|. .|+..++. + |++++---.--.+.+.+++-+ ++ ..+++|+..
T Consensus 3 I~l~tG~pGSGKT-----~~aV~~~i~palk~--G-R~V~TNI~Gl~le~i~~~~~~-~p~~~~li~i~~ 63 (399)
T PHA00350 3 IYAIVGRPGSYKS-----YEAVVYHIIPALKD--G-RKVITNIPGLNLDVFEKVFGE-FPSTARLIRIVD 63 (399)
T ss_pred eEEEecCCCCchh-----HHHHHHHHHHHHHC--C-CEEEECCCCCCHHHHHhhccc-CcccceeEEecc
Confidence 5799999999999 33333 44444543 3 555542111223344333332 21 235666644
No 292
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.16 Score=58.22 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHhc----cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCC-eEEEEecchHHHHHHHHHHHhh
Q 002130 735 DSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS-RILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 735 N~eQr~AV~~ILs~----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~-RILVcAPSNsAaD~LleRL~~~ 809 (961)
-++|.+.+..+|.. ..+.-.+|.|+|||||| .|+-.++.++.....+. -+=|=|..+..-..+..++...
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT-----~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKT-----ATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred cHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHh-----HHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 47788888877754 22223799999999999 66656666555443333 3556666777777777777764
Q ss_pred C
Q 002130 810 I 810 (961)
Q Consensus 810 l 810 (961)
+
T Consensus 97 ~ 97 (366)
T COG1474 97 L 97 (366)
T ss_pred c
Confidence 4
No 293
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.70 E-value=0.055 Score=57.60 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.-.+.-+.|++-+..+. .-+||.|||||||| ++++++..++-
T Consensus 6 ~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKT------mlA~~l~~lLP 47 (206)
T PF01078_consen 6 VGQEEAKRALEIAAAGG--HHLLLIGPPGTGKT------MLARRLPSLLP 47 (206)
T ss_dssp SSTHHHHHHHHHHHHCC----EEEES-CCCTHH------HHHHHHHHCS-
T ss_pred cCcHHHHHHHHHHHcCC--CCeEEECCCCCCHH------HHHHHHHHhCC
Confidence 34566777777666543 35799999999999 77788777654
No 294
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.68 E-value=0.12 Score=54.99 Aligned_cols=60 Identities=10% Similarity=-0.041 Sum_probs=38.9
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+..+|.+ .....++|.|||||||| +...+.+.+.+++ +.++|.++-. ...+.+++++..
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT-----~la~~~l~~~~~~--ge~~lyvs~e-e~~~~i~~~~~~ 70 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKS-----IFSQQFLWNGLQM--GEPGIYVALE-EHPVQVRRNMAQ 70 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHH-----HHHHHHHHHHHHc--CCcEEEEEee-CCHHHHHHHHHH
Confidence 34556654 22336899999999999 4444444444443 7788888854 456667777654
No 295
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.67 E-value=0.11 Score=62.16 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=25.9
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
..++|.||.|+||| ++++.++..+.....+.+|.+.
T Consensus 351 ~vIaLVGPtGvGKT-----TtaakLAa~la~~~~gkkVaLI 386 (559)
T PRK12727 351 GVIALVGPTGAGKT-----TTIAKLAQRFAAQHAPRDVALV 386 (559)
T ss_pred CEEEEECCCCCCHH-----HHHHHHHHHHHHhcCCCceEEE
Confidence 35778899999999 7877777766554434566544
No 296
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.62 E-value=0.14 Score=62.05 Aligned_cols=134 Identities=8% Similarity=-0.001 Sum_probs=82.0
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHHHHhhh
Q 002130 758 GPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSL 837 (961)
Q Consensus 758 GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~ 837 (961)
=|=--||| ..++-+|.-++....+-+|..+||-..++.-+.+++...+ .|.....+. ....
T Consensus 209 VPRRHGKT-----Wf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~l-----rrwF~~~~v-i~~k-------- 269 (668)
T PHA03372 209 VPRRHGKT-----WFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRC-----RRMFPRKHT-IENK-------- 269 (668)
T ss_pred ecccCCce-----ehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHH-----hhhcCccce-eeec--------
Confidence 38889999 8888888888887789999999999999988887776421 222221111 1110
Q ss_pred hcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHh-ccccCCCeEEEEeCC---
Q 002130 838 VERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLG-NLANENTRVIVTGAP--- 913 (961)
Q Consensus 838 ~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa-~LA~~~trVVLaGDp--- 913 (961)
.+.-.|..|. .+..+++++|.... .++...|+.+|||||.=. -|+++..|. .|+.+++++|.+--+
T Consensus 270 ~~tI~~s~pg----~Kst~~fasc~n~N-----siRGQ~fnll~VDEA~FI-~~~a~~tilgfm~q~~~KiIfISS~Nsg 339 (668)
T PHA03372 270 DNVISIDHRG----AKSTALFASCYNTN-----SIRGQNFHLLLVDEAHFI-KKDAFNTILGFLAQNTTKIIFISSTNTT 339 (668)
T ss_pred CcEEEEecCC----CcceeeehhhccCc-----cccCCCCCEEEEehhhcc-CHHHHHHhhhhhcccCceEEEEeCCCCC
Confidence 0111222221 22345566655432 344557999999999654 455444332 245688999998554
Q ss_pred CCCCccc
Q 002130 914 HNSPSRV 920 (961)
Q Consensus 914 kQLpPvV 920 (961)
+|=-.++
T Consensus 340 ~~sTSfL 346 (668)
T PHA03372 340 NDATCFL 346 (668)
T ss_pred CccchHH
Confidence 4444444
No 297
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.57 E-value=0.39 Score=41.71 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=22.8
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
+++.|..|+||| ++ +..+.+.+++ .+.++++..
T Consensus 2 ~~~~g~~G~Gkt-----t~-~~~l~~~l~~-~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKT-----TL-AANLAAALAK-RGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHH-----HH-HHHHHHHHHH-CCCeEEEEC
Confidence 468899999999 44 4444445544 477887776
No 298
>PRK06851 hypothetical protein; Provisional
Probab=93.50 E-value=0.028 Score=64.37 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=36.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL 806 (961)
.++|.|+|||||| +++-+++.++.+..-.-.++.|+..|.++|.|+-+=
T Consensus 32 ~~il~G~pGtGKS-----tl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgviip~ 80 (367)
T PRK06851 32 IFILKGGPGTGKS-----TLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPE 80 (367)
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHHcCCeEEEEEcCCCCCceeeEEecC
Confidence 6899999999999 565555555545422335789999999999887543
No 299
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.43 E-value=0.09 Score=56.96 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=31.7
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL 806 (961)
-.++|.|+|||||| +...+.+.+.+++ +.+++..+.-. -.+.+.+++
T Consensus 37 s~~lI~G~pGtGKT-----~l~~qf~~~~a~~--Ge~vlyis~Ee-~~~~~~~~l 83 (259)
T TIGR03878 37 SVINITGVSDTGKS-----LMVEQFAVTQASR--GNPVLFVTVES-PANFVYTSL 83 (259)
T ss_pred cEEEEEcCCCCCHH-----HHHHHHHHHHHhC--CCcEEEEEecC-CchHHHHHH
Confidence 36899999999999 5555555554443 77888877654 335555554
No 300
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.35 E-value=0.16 Score=53.05 Aligned_cols=59 Identities=5% Similarity=0.015 Sum_probs=40.2
Q ss_pred HHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 742 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 742 V~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+..+|.+ .....++|.|+||+||| ....+.+...+++ +.+++.++... ..+.+++++..
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt-----~~~~~~~~~~~~~--g~~~~y~s~e~-~~~~l~~~~~~ 65 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKT-----TFSLQFLYQGLKN--GEKAMYISLEE-REERILGYAKS 65 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHH-----HHHHHHHHHHHhC--CCeEEEEECCC-CHHHHHHHHHH
Confidence 4556643 12236799999999999 5555555554554 78888887765 57788888764
No 301
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.34 E-value=0.13 Score=57.74 Aligned_cols=54 Identities=13% Similarity=0.200 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.++++|.+.+..++.... -++|.|++|+||| +++-.++.++....+..||++.-
T Consensus 132 ~~~~~~~~~L~~~v~~~~--~ilI~G~tGSGKT-----Tll~aL~~~~~~~~~~~rivtIE 185 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHR--NILVIGGTGSGKT-----TLVNAIINEMVIQDPTERVFIIE 185 (319)
T ss_pred CCCHHHHHHHHHHHHcCC--eEEEECCCCCCHH-----HHHHHHHHhhhhcCCCceEEEEc
Confidence 467889999988877543 5799999999999 55544444443334456766543
No 302
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.26 E-value=0.21 Score=60.30 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=32.3
Q ss_pred CccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCC
Q 002130 876 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNS 916 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQL 916 (961)
.+.|+||||| |.-.+-.+..+..++ .+...-.+||-.|.
T Consensus 528 ~~kh~vIDea-qdys~~q~~~~r~l~-~~as~tivgd~gq~ 566 (747)
T COG3973 528 RLKHTVIDEA-QDYSRFQFTDNRTLA-ERASMTIVGDYGQV 566 (747)
T ss_pred cccceeechh-hhcchhhhHHHhhhh-hhccceEeccCCce
Confidence 5999999999 777788888888776 56788889998884
No 303
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.26 E-value=0.41 Score=58.41 Aligned_cols=42 Identities=10% Similarity=0.144 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
++...+.+...+.... ...||++||+|+||| + ++.++...+.
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKt-----t-~A~~lAk~l~ 64 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKT-----T-CARIFAKTIN 64 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHH-----H-HHHHHHHHhC
Confidence 4444555555554433 334899999999999 4 6666665553
No 304
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.22 E-value=0.31 Score=60.25 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 727 CPYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 727 ~~~~n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..|.+....+..++++..++.. ..+.-+|++|||||||| +++.++...+
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT------~lakalA~e~ 511 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKT------LLAKAVATES 511 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHH------HHHHHHHHhc
Confidence 3455455556666666665431 11122699999999999 6777776543
No 305
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.21 E-value=0.069 Score=60.26 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=17.0
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
+||+|||||||| +++.++..-
T Consensus 159 vLL~GppGtGKT------~lakaia~~ 179 (364)
T TIGR01242 159 VLLYGPPGTGKT------LLAKAVAHE 179 (364)
T ss_pred EEEECCCCCCHH------HHHHHHHHh
Confidence 799999999999 666666553
No 306
>CHL00181 cbbX CbbX; Provisional
Probab=93.19 E-value=0.05 Score=60.02 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=20.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
+++++|||||||| ++|.++.+.+..
T Consensus 61 ~ill~G~pGtGKT------~lAr~la~~~~~ 85 (287)
T CHL00181 61 HMSFTGSPGTGKT------TVALKMADILYK 85 (287)
T ss_pred eEEEECCCCCCHH------HHHHHHHHHHHH
Confidence 4789999999999 777777776543
No 307
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=93.18 E-value=0.24 Score=63.57 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC---------CCCeEEEEecchHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS---------PKSRILICAPWNRTCDKL 802 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~---------p~~RILVcAPSNsAaD~L 802 (961)
..||..|-.....++.... -+++.||.|.||| .+.+-.|+|-+..+ ...+|...||.-+-|+++
T Consensus 308 ~sLNrIQS~v~daAl~~~E--nmLlCAPTGaGKT-----NVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~ 380 (1674)
T KOG0951|consen 308 QSLNRIQSKVYDAALRGDE--NMLLCAPTGAGKT-----NVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEM 380 (1674)
T ss_pred hhhhHHHHHHHHHHhcCcC--cEEEeccCCCCch-----HHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHH
Confidence 4589999988888887643 4699999999999 55555555555542 234899999999999999
Q ss_pred HHHHHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCC---CCCccE
Q 002130 803 MECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGIT---AGHFSH 879 (961)
Q Consensus 803 leRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~---~g~Fdh 879 (961)
+..+.+.+....| +|.-..++ . .-..+.+....|||||----......+-. ..-|+.
T Consensus 381 VgsfSkRla~~GI-~V~ElTgD-----------------~--~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrL 440 (1674)
T KOG0951|consen 381 VGSFSKRLAPLGI-TVLELTGD-----------------S--QLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRL 440 (1674)
T ss_pred HHHHHhhccccCc-EEEEeccc-----------------c--cchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHH
Confidence 9988775433221 12111111 0 01234567778888887543222111100 114888
Q ss_pred EEEecCC
Q 002130 880 IFLIDAS 886 (961)
Q Consensus 880 VIIDEAS 886 (961)
+||||..
T Consensus 441 lIIDEIH 447 (1674)
T KOG0951|consen 441 LIIDEIH 447 (1674)
T ss_pred Hhhhhhh
Confidence 9999984
No 308
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=93.13 E-value=0.32 Score=50.35 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=26.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.++|+||=+.||| +-|...+..+..+ +.+||+.-|
T Consensus 3 l~~i~GpM~sGKS-----~eLi~~~~~~~~~--~~~v~~~kp 37 (176)
T PF00265_consen 3 LEFITGPMFSGKS-----TELIRRIHRYEIA--GKKVLVFKP 37 (176)
T ss_dssp EEEEEESTTSSHH-----HHHHHHHHHHHHT--T-EEEEEEE
T ss_pred EEEEECCcCChhH-----HHHHHHHHHHHhC--CCeEEEEEe
Confidence 4689999999999 7777776665443 778887766
No 309
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.12 E-value=0.17 Score=55.33 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHhcc-CCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
..++++.++.+...+... .+..++|+|||||||| +++.++.+
T Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT------~la~~l~~ 65 (316)
T PHA02544 23 CILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKT------TVAKALCN 65 (316)
T ss_pred hcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHH------HHHHHHHH
Confidence 456788888888777543 2345667899999999 55566544
No 310
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.12 E-value=0.25 Score=60.09 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=37.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh----CCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----SPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~----~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
.++|.|-+|+||| +-| =|.+.. ..+.+|-++-|-..||--++.|+.+.++
T Consensus 282 VLiI~GeTGSGKT-----TQi----PQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 282 VLIIVGETGSGKT-----TQI----PQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred EEEEEcCCCCCcc-----ccc----cHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhC
Confidence 5789999999999 332 333322 2456688888899999999999998553
No 311
>PRK05642 DNA replication initiation factor; Validated
Probab=93.12 E-value=0.15 Score=54.36 Aligned_cols=36 Identities=11% Similarity=-0.134 Sum_probs=23.7
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.+++|+||+||||| +. +.+|...+.. .+.+|+...-
T Consensus 46 ~~l~l~G~~G~GKT-----HL-l~a~~~~~~~-~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRS-----HL-LQAACLRFEQ-RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHH-----HH-HHHHHHHHHh-CCCcEEEeeH
Confidence 47899999999999 44 4454433332 2567766553
No 312
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.09 E-value=0.33 Score=54.89 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=34.0
Q ss_pred CCCccEEEEecCCCCChHHHHHHHhccc---cCCCeEEEEeC-CCCCCccccCh
Q 002130 874 AGHFSHIFLIDASSATEPETMIVLGNLA---NENTRVIVTGA-PHNSPSRVRSD 923 (961)
Q Consensus 874 ~g~FdhVIIDEASQAtEPEaLIPLa~LA---~~~trVVLaGD-pkQLpPvV~S~ 923 (961)
.|.+.++|||||-.+++..+ =+|.... ...+.+||+.+ +.+|.|+|+|.
T Consensus 105 ~g~~KV~iI~~a~~m~~~Aa-NaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAA-NALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred cCCceEEEEechhhhCHHHH-HHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 35788999999977765433 3332222 24578888877 57999999875
No 313
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=93.02 E-value=0.35 Score=58.25 Aligned_cols=131 Identities=14% Similarity=0.115 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHH--HHHHHHhCCCCeEEEEecchHHH----HHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREA--VLQIRRRSPKSRILICAPWNRTC----DKLMEC 805 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVea--IlQLlk~~p~~RILVcAPSNsAa----D~LleR 805 (961)
..|-+-|..||++-|-.-. -.+|.-+.+|||| .|.|+ |..++. .+.+.|...|--+-| +.+.+|
T Consensus 215 ~eLlPVQ~laVe~GLLeG~--nllVVSaTasGKT------LIgElAGi~~~l~--~g~KmlfLvPLVALANQKy~dF~~r 284 (830)
T COG1202 215 EELLPVQVLAVEAGLLEGE--NLLVVSATASGKT------LIGELAGIPRLLS--GGKKMLFLVPLVALANQKYEDFKER 284 (830)
T ss_pred ceecchhhhhhhhccccCC--ceEEEeccCCCcc------hHHHhhCcHHHHh--CCCeEEEEehhHHhhcchHHHHHHH
Confidence 4678889999998764322 2588899999999 44554 333443 377888777754444 556666
Q ss_pred HHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCC-hhhhhccceEEEEeeccchhhhccCCCCCCccEEEEec
Q 002130 806 LMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCP-PLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLID 884 (961)
Q Consensus 806 L~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p-~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDE 884 (961)
+.+ +.-..-+|++...-... ..| ....-.+++|||.|.-+...+...+-..|..-.|+|||
T Consensus 285 Ys~-LglkvairVG~srIk~~-----------------~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDE 346 (830)
T COG1202 285 YSK-LGLKVAIRVGMSRIKTR-----------------EEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDE 346 (830)
T ss_pred hhc-ccceEEEEechhhhccc-----------------CCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeee
Confidence 643 32233478876421000 000 00112578999999999987665555667889999999
Q ss_pred CCCCChH
Q 002130 885 ASSATEP 891 (961)
Q Consensus 885 ASQAtEP 891 (961)
.. +++-
T Consensus 347 iH-tL~d 352 (830)
T COG1202 347 IH-TLED 352 (830)
T ss_pred ee-eccc
Confidence 94 4444
No 314
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.98 E-value=0.19 Score=50.04 Aligned_cols=10 Identities=10% Similarity=-0.127 Sum_probs=9.7
Q ss_pred EeccCCCCCC
Q 002130 756 LEGPLCNNFV 765 (961)
Q Consensus 756 I~GPPGTGKT 765 (961)
++|++|||||
T Consensus 58 fHG~tGtGKn 67 (127)
T PF06309_consen 58 FHGWTGTGKN 67 (127)
T ss_pred eecCCCCcHH
Confidence 7899999999
No 315
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.88 E-value=0.14 Score=51.55 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=35.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhC--------CCCeEEEEecchHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--------PKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~--------p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.++|.||+|+||| +.+.+++.++.... .+.+||+...-+. .+.+.+|+..
T Consensus 34 l~~i~g~~g~GKT-----~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~ 91 (193)
T PF13481_consen 34 LTLIAGPPGSGKT-----TLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRA 91 (193)
T ss_dssp EEEEEECSTSSHH-----HHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHH
T ss_pred EEEEEeCCCCCHH-----HHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHH
Confidence 6799999999999 88888888777521 4679999988887 5566677765
No 316
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.87 E-value=0.42 Score=52.40 Aligned_cols=62 Identities=8% Similarity=0.134 Sum_probs=39.1
Q ss_pred CccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHcC
Q 002130 876 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT 941 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~~ 941 (961)
..++|||||.|...+..++.- .+..+-++|-.---.++.=++..+.-++. ++.--|+|-.+.
T Consensus 218 ~PEViIvDEIGt~~d~~A~~t---a~~~GVkli~TaHG~~iedl~krp~lkdl-v~i~af~r~~el 279 (308)
T COG3854 218 SPEVIIVDEIGTEEDALAILT---ALHAGVKLITTAHGNGIEDLIKRPTLKDL-VEIQAFDRGIEL 279 (308)
T ss_pred CCcEEEEeccccHHHHHHHHH---HHhcCcEEEEeeccccHHHhhcChhHHHH-HhhhHHHHHHHH
Confidence 578999999996655544433 33456677766666677666655544443 356667776653
No 317
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.87 E-value=0.11 Score=55.49 Aligned_cols=66 Identities=11% Similarity=0.034 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHH--HHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 737 DSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI--RRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 737 eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL--lk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
...+.|...|.. .....+.|+|++|+||| +||..+.+- ++..-+..+-|....+.....+.+.+..
T Consensus 3 ~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT------~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~ 72 (287)
T PF00931_consen 3 KEIEKLKDWLLDNSNEVRVVAIVGMGGIGKT------TLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILR 72 (287)
T ss_dssp HHHHHHHHHHHTTTTSSEEEEEEESTTSSHH------HHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCeEEEEEEcCCcCCcc------eeeeecccccccccccccccccccccccccccccccccc
Confidence 456677777765 34557899999999999 444444433 2222334555555544433444455554
No 318
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.84 E-value=0.16 Score=58.81 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=69.3
Q ss_pred ccCCCCCCccchHHHHHHHHHHH--HHhCCCCeEEEEecchHHHHHHHHHHHh-hCCCCceEecccc-cccccCccHHHH
Q 002130 758 GPLCNNFVLSKTGNVVREAVLQI--RRRSPKSRILICAPWNRTCDKLMECLMK-DIPASEMFRANAA-FREADGVSDEIF 833 (961)
Q Consensus 758 GPPGTGKTls~~g~TLVeaIlQL--lk~~p~~RILVcAPSNsAaD~LleRL~~-~l~~~~ilRV~a~-sR~~~~V~~~I~ 833 (961)
.-.||||||..+---+..+.+|. ..+..+.++||.+||+.-|-.+-....+ ...+.+-+.++.. .|. +
T Consensus 264 AQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~-----e--- 335 (629)
T KOG0336|consen 264 AQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRN-----E--- 335 (629)
T ss_pred EecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCch-----h---
Confidence 35899999432211112222222 1234677999999999877665544443 2233333333322 111 1
Q ss_pred HhhhhcccccCCChhhhh-ccceEEEEeeccchhhhccCC-CCCCccEEEEecCCCCC----hHHHHHHHhccccCCCeE
Q 002130 834 QVSLVERECFSCPPLEEL-RQYKVISSTFVSSFRLHNQGI-TAGHFSHIFLIDASSAT----EPETMIVLGNLANENTRV 907 (961)
Q Consensus 834 ~y~~~~~~~F~~p~~e~L-~~~rVVvtT~ssag~L~~~~~-~~g~FdhVIIDEASQAt----EPEaLIPLa~LA~~~trV 907 (961)
+.++| +...||++|......|...++ .-...+++++|||-.++ ||...--|.. ..++.+.
T Consensus 336 -------------qie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld-iRPDRqt 401 (629)
T KOG0336|consen 336 -------------QIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLD-IRPDRQT 401 (629)
T ss_pred -------------HHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhh-cCCccee
Confidence 11222 467888888765544443332 23468999999998765 4544332221 1244555
Q ss_pred EEEe
Q 002130 908 IVTG 911 (961)
Q Consensus 908 VLaG 911 (961)
||..
T Consensus 402 vmTS 405 (629)
T KOG0336|consen 402 VMTS 405 (629)
T ss_pred eeec
Confidence 5543
No 319
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.72 E-value=0.12 Score=59.40 Aligned_cols=42 Identities=7% Similarity=0.085 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhccCCC-CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQS-PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~-P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
++.-++.+.+.+...+.+ -+|++||||+||| |++.++.+.+.
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKt------t~A~~~a~~l~ 63 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKT------TAARVFAKAVN 63 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHH------HHHHHHHHHhc
Confidence 444455555555543333 3889999999999 67777766554
No 320
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=92.70 E-value=0.87 Score=54.23 Aligned_cols=126 Identities=10% Similarity=0.156 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh--hC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK--DI 810 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~--~l 810 (961)
.+-+.|...+..+.++.+..-=+|.=|-|.||| .+|.|.+..| ++++||.|-|+..|+.-..-+.. .+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKt--LVGvTAa~ti--------kK~clvLcts~VSVeQWkqQfk~wsti 371 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKT--LVGVTAACTI--------KKSCLVLCTSAVSVEQWKQQFKQWSTI 371 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCc--eeeeeeeeee--------cccEEEEecCccCHHHHHHHHHhhccc
Confidence 567889999999997632212267779999999 3444433222 56889999999999988877764 34
Q ss_pred CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc--------C-CCCCCccEEE
Q 002130 811 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ--------G-ITAGHFSHIF 881 (961)
Q Consensus 811 ~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~--------~-~~~g~FdhVI 881 (961)
....+.|+-+..+ +.|. .++-|||+|.++.+.-... + +....+-+++
T Consensus 372 ~d~~i~rFTsd~K-----------------e~~~-------~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGlll 427 (776)
T KOG1123|consen 372 QDDQICRFTSDAK-----------------ERFP-------SGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLL 427 (776)
T ss_pred CccceEEeecccc-----------------ccCC-------CCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEE
Confidence 5556666643211 1121 4677999999887642211 1 2334688999
Q ss_pred EecCCCCChHHHH
Q 002130 882 LIDASSATEPETM 894 (961)
Q Consensus 882 IDEASQAtEPEaL 894 (961)
+||.. +-|..|
T Consensus 428 lDEVH--vvPA~M 438 (776)
T KOG1123|consen 428 LDEVH--VVPAKM 438 (776)
T ss_pred eehhc--cchHHH
Confidence 99984 344443
No 321
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=92.68 E-value=0.077 Score=68.60 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=42.9
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccccC----CCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHc
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLANE----NTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL 940 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~~----~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~ 940 (961)
.+|+||+|||+ |-|.|..+-=|..+... .+.++||||+||= =++- .|-+..+|....+
T Consensus 377 ~~~~~iLIDEf-QDT~~~Q~~Il~~l~~~~~~~~~~lF~VGD~KQS------IY~F-RgAD~~~f~~a~~ 438 (1139)
T COG1074 377 EQYPHILIDEF-QDTDPQQWRILSRLFAGFKAGNRTLFLVGDPKQS------IYRF-RGADIFTFLEAAS 438 (1139)
T ss_pred hcCCeEEeecc-ccCCHHHHHHHHHHHhcCCCCCCceEEecCchHH------hhhh-cCCChHHHHHHhh
Confidence 48999999999 99999877777666544 3599999999995 1222 2456677766665
No 322
>PF05729 NACHT: NACHT domain
Probab=92.57 E-value=0.16 Score=48.99 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=21.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhC
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS 784 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~ 784 (961)
.++|.|+||+||| +++..++.++....
T Consensus 2 ~l~I~G~~G~GKS-----tll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKS-----TLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChH-----HHHHHHHHHHHhcC
Confidence 4689999999999 77776666666553
No 323
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=92.56 E-value=0.38 Score=60.67 Aligned_cols=115 Identities=7% Similarity=-0.101 Sum_probs=63.2
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC--CCCceEecccccccccCccHHH
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI--PASEMFRANAAFREADGVSDEI 832 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l--~~~~ilRV~a~sR~~~~V~~~I 832 (961)
+.+-..|+||| .+.+ +..++....+..|.|+|++.--|-...+-+.... -+..+--+. ..++..-
T Consensus 99 IaEm~TGEGKT-----L~a~--lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~------~~~~~~~ 165 (908)
T PRK13107 99 IAEMRTGEGKT-----LTAT--LPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINV------AGLGQQE 165 (908)
T ss_pred cccccCCCCch-----HHHH--HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEec------CCCCHHH
Confidence 56778999999 3322 2223333457779999999887777766665411 111111110 1111110
Q ss_pred HHhhhhcccccCCChhhhhccceEEEEeeccchh--hhcc-CCC-----CCCccEEEEecCCCCChHHHHHHH
Q 002130 833 FQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHNQ-GIT-----AGHFSHIFLIDASSATEPETMIVL 897 (961)
Q Consensus 833 ~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~~-~~~-----~g~FdhVIIDEASQAtEPEaLIPL 897 (961)
......+.|+.+|..-.|. |... .+. ...|.++|||||-.++--|+-.||
T Consensus 166 ---------------r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPL 223 (908)
T PRK13107 166 ---------------KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPL 223 (908)
T ss_pred ---------------HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCce
Confidence 1112356888888877643 2211 222 246889999999776555543333
No 324
>PRK04328 hypothetical protein; Provisional
Probab=92.55 E-value=0.23 Score=53.54 Aligned_cols=59 Identities=10% Similarity=-0.032 Sum_probs=37.6
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
.+..+|.+ .....++|.|+|||||| ....+.+.+-++. +.++++++-.....+ +++++.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT-----~l~~~fl~~~~~~--ge~~lyis~ee~~~~-i~~~~~ 71 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKS-----IFSQQFLWNGLQM--GEPGVYVALEEHPVQ-VRRNMR 71 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHH-----HHHHHHHHHHHhc--CCcEEEEEeeCCHHH-HHHHHH
Confidence 34556654 22346899999999999 5444555554443 778888876665554 555544
No 325
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.51 E-value=0.11 Score=67.15 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=31.4
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcccc-----------CCCeEEEEeCCCCC
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLAN-----------ENTRVIVTGAPHNS 916 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~-----------~~trVVLaGDpkQL 916 (961)
..|+||+|||+ |-|.+..+--|..|+. ....+++|||++|=
T Consensus 390 ~r~~~iLVDEF-QDTs~~Q~~il~~L~~~~~~g~~~~~~~~~~lf~VGD~kQS 441 (1141)
T TIGR02784 390 RGIDHILVDEA-QDTSPEQWDIIQALAEEFFSGEGARSGVERTIFAVGDEKQS 441 (1141)
T ss_pred cCCCEEEEECC-cCCCHHHHHHHHHHHHhhcccccccCCCCCeEEEEeCCccc
Confidence 48999999999 8888866555554443 14689999999995
No 326
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.47 E-value=0.14 Score=61.14 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.....+++..++......++||+|||||||| ++|.+|.+..+
T Consensus 70 qs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt------~lAr~i~~~~~ 111 (531)
T TIGR02902 70 QEEGIKALKAALCGPNPQHVIIYGPPGVGKT------AAARLVLEEAK 111 (531)
T ss_pred cHHHHHHHHHHHhCCCCceEEEECCCCCCHH------HHHHHHHHHhh
Confidence 3445555555554444568999999999999 78888876554
No 327
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.37 E-value=0.27 Score=51.87 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=38.7
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+..+|.+ .....++|.|+|||||| +.....+...+++ +.+++..+-.+.. +.+++++..
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt-----~l~~~~~~~~~~~--g~~~~y~~~e~~~-~~~~~~~~~ 74 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKS-----VLSQQFVYGALKQ--GKKVYVITTENTS-KSYLKQMES 74 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChH-----HHHHHHHHHHHhC--CCEEEEEEcCCCH-HHHHHHHHH
Confidence 34556653 22346899999999999 4444444444443 7888888887654 556666543
No 328
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.36 E-value=0.13 Score=66.39 Aligned_cols=41 Identities=15% Similarity=0.364 Sum_probs=32.7
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccccCC--CeEEEEeCCCCC
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLANEN--TRVIVTGAPHNS 916 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~~~--trVVLaGDpkQL 916 (961)
..|+||+|||. |-|.|..+--|..++... +.+++|||++|=
T Consensus 295 ~ry~~vLVDEF-QDTd~~Q~~il~~L~~~~~~~~L~~VGDpKQS 337 (1087)
T TIGR00609 295 EQYPIALIDEF-QDTDPQQYRIFSKLFIAQKTTSLFLIGDPKQA 337 (1087)
T ss_pred hCCCEEEEECC-cCCCHHHHHHHHHHHhCCCCCeEEEEECCccc
Confidence 48999999998 889997766666555333 389999999995
No 329
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.32 E-value=0.23 Score=55.26 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEE
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILIC 792 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVc 792 (961)
.+.++|.+.+..++.... -++|.|++|+||| |++.+++..+.. .++.||++.
T Consensus 116 ~~~~~~~~~L~~~v~~~~--~ilI~G~tGSGKT------Tll~al~~~i~~~~~~~ri~ti 168 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARK--NILVVGGTGSGKT------TLANALLAEIAKNDPTDRVVII 168 (299)
T ss_pred CCCHHHHHHHHHHHHcCC--eEEEECCCCCCHH------HHHHHHHHHhhccCCCceEEEE
Confidence 467888888888887543 5799999999999 444555555543 345677654
No 330
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.32 E-value=0.12 Score=58.25 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=24.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..++|+|++||||| +.+..++.+++.. +.+|+..+
T Consensus 184 ~~Lll~G~~GtGKT-----hLa~aIa~~l~~~--g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKT-----FLSNCIAKELLDR--GKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHH-----HHHHHHHHHHHHC--CCeEEEEE
Confidence 46899999999999 5444444445543 67776655
No 331
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=92.31 E-value=0.42 Score=58.55 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHhcc--CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 731 NYKLDSDSNSAVHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~--~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+..++..|..++..++..- +....+|.|.+|+||| .+++.++.+ .+..+||.+++...|+.+.+.|..
T Consensus 10 ~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka-----~lia~l~~~-----~~r~vLIVt~~~~~A~~l~~dL~~ 79 (652)
T PRK05298 10 PYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKT-----FTMANVIAR-----LQRPTLVLAHNKTLAAQLYSEFKE 79 (652)
T ss_pred CCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHH-----HHHHHHHHH-----hCCCEEEEECCHHHHHHHHHHHHH
Confidence 3578999999999988652 2224579999999999 666654332 256899999999999999999988
Q ss_pred hCCCCceEec
Q 002130 809 DIPASEMFRA 818 (961)
Q Consensus 809 ~l~~~~ilRV 818 (961)
.++...+.-+
T Consensus 80 ~~~~~~v~~f 89 (652)
T PRK05298 80 FFPENAVEYF 89 (652)
T ss_pred hcCCCeEEEe
Confidence 7766545544
No 332
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.069 Score=61.62 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=26.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
+|++|||||||| .|+.||+--.. +|+=|..+-.|..+..
T Consensus 248 vLm~GPPGTGKT------lLAKAvATEc~---------tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 248 VLMVGPPGTGKT------LLAKAVATECG---------TTFFNVSSSTLTSKWR 286 (491)
T ss_pred eeeeCCCCCcHH------HHHHHHHHhhc---------CeEEEechhhhhhhhc
Confidence 699999999999 67777664221 4555555555665554
No 333
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.29 E-value=0.08 Score=49.36 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=17.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.|+||+||| |++..+.+.+
T Consensus 2 I~I~G~~gsGKS------T~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKS------TLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHH------HHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHH
Confidence 589999999999 6666665544
No 334
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.28 E-value=0.11 Score=58.78 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=26.3
Q ss_pred HHHHHHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 738 SNSAVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 738 Qr~AV~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
|..+++.++- . .+..-+||.|+|||||| |+++++..++
T Consensus 13 q~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT------~lar~la~ll 53 (334)
T PRK13407 13 QEEMKQAMVLTAIDPGIGGVLVFGDRGTGKS------TAVRALAALL 53 (334)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEcCCCCCHH------HHHHHHHHHC
Confidence 5555554332 1 22235899999999999 7888888776
No 335
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.26 E-value=0.13 Score=59.49 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=31.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 727 CPYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 727 ~~~~n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
..|.+...-+.|++.++.++.. ..+.-+||+|||||||| +++.++...
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT------~LAkalA~~ 202 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKT------MLAKAVAHH 202 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHH------HHHHHHHHh
Confidence 3455555667788777765531 11234799999999999 566776553
No 336
>PRK05973 replicative DNA helicase; Provisional
Probab=92.22 E-value=0.18 Score=54.63 Aligned_cols=48 Identities=8% Similarity=-0.094 Sum_probs=36.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.++|.|+||+||| +...+.+....++ +.++++.+..-. .+.|.+|+..
T Consensus 66 l~LIaG~PG~GKT-----~lalqfa~~~a~~--Ge~vlyfSlEes-~~~i~~R~~s 113 (237)
T PRK05973 66 LVLLGARPGHGKT-----LLGLELAVEAMKS--GRTGVFFTLEYT-EQDVRDRLRA 113 (237)
T ss_pred EEEEEeCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEEEeCC-HHHHHHHHHH
Confidence 6899999999999 6666666665554 778888877665 4777777765
No 337
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=92.22 E-value=0.33 Score=60.84 Aligned_cols=122 Identities=11% Similarity=-0.029 Sum_probs=68.1
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC--CCceEecccccccccCccHHH
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP--ASEMFRANAAFREADGVSDEI 832 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~--~~~ilRV~a~sR~~~~V~~~I 832 (961)
+.+...|+||| .+.+ +..++....+..|-|+|+|..-|....+.+..... +..+.-+. ..++..-
T Consensus 98 Iaem~TGeGKT-----Lva~--lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~------~~~~~~e 164 (830)
T PRK12904 98 IAEMKTGEGKT-----LVAT--LPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVIL------SGMSPEE 164 (830)
T ss_pred hhhhhcCCCcH-----HHHH--HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEc------CCCCHHH
Confidence 56778999999 3322 22222222466788999998888777776665221 11111111 1112111
Q ss_pred HHhhhhcccccCCChhhhhccceEEEEeeccchh--hhcc-C-----CCCCCccEEEEecCCCCChHHHHHHHhccccCC
Q 002130 833 FQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHNQ-G-----ITAGHFSHIFLIDASSATEPETMIVLGNLANEN 904 (961)
Q Consensus 833 ~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~~-~-----~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~ 904 (961)
......+.|+++|..-.|. |... . +....|.++|||||-.++--|+ .
T Consensus 165 ---------------r~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA----------r 219 (830)
T PRK12904 165 ---------------RREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA----------R 219 (830)
T ss_pred ---------------HHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC----------C
Confidence 1122347899999887753 2211 1 1234688999999976543333 4
Q ss_pred CeEEEEeCCC
Q 002130 905 TRVIVTGAPH 914 (961)
Q Consensus 905 trVVLaGDpk 914 (961)
+-+|+.|-..
T Consensus 220 tpLiiSg~~~ 229 (830)
T PRK12904 220 TPLIISGPAE 229 (830)
T ss_pred CceeeECCCC
Confidence 5567777654
No 338
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.12 E-value=0.25 Score=59.28 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-----CCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-----SPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-----~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
.+.|++|+-..+..+. ++.++|-|.||||+. ++.++.++... ..+-+.+|.+|+..-|.++-....+.
T Consensus 160 t~iq~~aipvfl~~r~---~lAcapTGsgKtlaf----~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~ 232 (593)
T KOG0344|consen 160 TPIQKQAIPVFLEKRD---VLACAPTGSGKTLAF----NLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY 232 (593)
T ss_pred Ccccchhhhhhhcccc---eEEeccCCCcchhhh----hhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhc
Confidence 4668889888887653 589999999999643 33444444332 23468999999988877777666653
Q ss_pred C-CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccC---CCCCCccEEEEecC
Q 002130 810 I-PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG---ITAGHFSHIFLIDA 885 (961)
Q Consensus 810 l-~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~---~~~g~FdhVIIDEA 885 (961)
. .+..-+|+... .|...... -+.......++|+++|..-.-.+...+ +.-....|+++|||
T Consensus 233 ~~~~~t~~~a~~~------------~~~~~~~q---k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEa 297 (593)
T KOG0344|consen 233 SIDEGTSLRAAQF------------SKPAYPSQ---KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEA 297 (593)
T ss_pred CCCCCCchhhhhc------------ccccchhh---ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechH
Confidence 1 12222222110 00000000 001112245677777776543332222 23346889999999
Q ss_pred CCCChH
Q 002130 886 SSATEP 891 (961)
Q Consensus 886 SQAtEP 891 (961)
..+.||
T Consensus 298 D~lfe~ 303 (593)
T KOG0344|consen 298 DLLFEP 303 (593)
T ss_pred HhhhCh
Confidence 999999
No 339
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.11 E-value=0.57 Score=53.32 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=30.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE-ecchHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APWNRTC 799 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc-APSNsAa 799 (961)
.+|+.|-.|+||| +||+.+..++.++ +.+||+. +-|=.|+
T Consensus 141 Vil~vGVNG~GKT-----TTIaKLA~~l~~~--g~~VllaA~DTFRAa 181 (340)
T COG0552 141 VILFVGVNGVGKT-----TTIAKLAKYLKQQ--GKSVLLAAGDTFRAA 181 (340)
T ss_pred EEEEEecCCCchH-----hHHHHHHHHHHHC--CCeEEEEecchHHHH
Confidence 4578899999999 9999998877765 6666665 4455443
No 340
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=92.10 E-value=0.24 Score=60.46 Aligned_cols=164 Identities=10% Similarity=0.137 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHHHhc--cC-CCCceEeccCCCCCCccchHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSF--EG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~--~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-p~~RILVcAPSNsAaD~LleRL~ 807 (961)
-.|-+.|..-+.-..+. ++ .+ ++---=|-||| +--+..++++.+.+ --...||+||. +..++-+..+.
T Consensus 566 ctLKEYQlkGLnWLvnlYdqGiNG--ILADeMGLGKT-----VQsisvlAhLaE~~nIwGPFLVVtpa-StL~NWaqEis 637 (1185)
T KOG0388|consen 566 CTLKEYQLKGLNWLVNLYDQGING--ILADEMGLGKT-----VQSISVLAHLAETHNIWGPFLVVTPA-STLHNWAQEIS 637 (1185)
T ss_pred hhhHHHhhccHHHHHHHHHccccc--eehhhhccchh-----HHHHHHHHHHHHhccCCCceEEeehH-HHHhHHHHHHH
Confidence 45778888877766554 21 22 56667899999 55555556655542 22478999985 44677777777
Q ss_pred hhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCC
Q 002130 808 KDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS 887 (961)
Q Consensus 808 ~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQ 887 (961)
.+++..+++++...-.+ ...+++|-.-. +.| ..-..+.|||++.-..-.-. .-|..-.+.++|+||| |
T Consensus 638 rFlP~~k~lpywGs~~e----RkiLrKfw~rK-nmY-----~rna~fhVviTSYQlvVtDe-ky~qkvKWQYMILDEA-Q 705 (1185)
T KOG0388|consen 638 RFLPSFKVLPYWGSPSE----RKILRKFWNRK-NMY-----RRNAPFHVVITSYQLVVTDE-KYLQKVKWQYMILDEA-Q 705 (1185)
T ss_pred HhCccceeecCcCChhh----hHHHHHhcchh-hhh-----ccCCCceEEEEeeeeeechH-HHHHhhhhhheehhHH-H
Confidence 78888888887543211 11233321111 111 11245678887765543211 1122336889999999 6
Q ss_pred CChHHH---HHHHhccccCCCeEEEEeCCCCC
Q 002130 888 ATEPET---MIVLGNLANENTRVIVTGAPHNS 916 (961)
Q Consensus 888 AtEPEa---LIPLa~LA~~~trVVLaGDpkQL 916 (961)
|.-... |--|.. .....|++|.|-|-|-
T Consensus 706 AIKSSsS~RWKtLLs-F~cRNRLLLTGTPIQN 736 (1185)
T KOG0388|consen 706 AIKSSSSSRWKTLLS-FKCRNRLLLTGTPIQN 736 (1185)
T ss_pred HhhhhhhhHHHHHhh-hhccceeeecCCccch
Confidence 654422 222221 1356899999998773
No 341
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.09 E-value=0.43 Score=59.49 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=27.0
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..+++.||.|.||| +|++.+...+.....+.+|++.+
T Consensus 186 ~Vi~lVGpnGvGKT-----TTiaKLA~~~~~~~G~kkV~lit 222 (767)
T PRK14723 186 GVLALVGPTGVGKT-----TTTAKLAARCVAREGADQLALLT 222 (767)
T ss_pred eEEEEECCCCCcHH-----HHHHHHHhhHHHHcCCCeEEEec
Confidence 36789999999999 88888877664443345775544
No 342
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=92.06 E-value=0.22 Score=52.00 Aligned_cols=48 Identities=10% Similarity=0.154 Sum_probs=31.0
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecc
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 795 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPS 795 (961)
.+..+|.+ .....++|.|+|||||| ....+++.+.++. +.+++...--
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT-----~l~~~la~~~~~~--~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKT-----NICLQLAVEAAKN--GKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEECC
Confidence 35566643 12236799999999999 6666666665554 5666665544
No 343
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=92.05 E-value=0.27 Score=57.98 Aligned_cols=66 Identities=9% Similarity=0.164 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC-CCCeE-EEEecchHHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRI-LICAPWNRTCDKLMECL 806 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-p~~RI-LVcAPSNsAaD~LleRL 806 (961)
...+...+.+...|... ..++++|||||||| ++|..+.+.+... ...+| .|+.+.+-+...+++.+
T Consensus 178 ~i~e~~le~l~~~L~~~--~~iil~GppGtGKT------~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 178 FIPETTIETILKRLTIK--KNIILQGPPGVGKT------FVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred cCCHHHHHHHHHHHhcC--CCEEEECCCCCCHH------HHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc
Confidence 34566666666666543 25799999999999 5556665555321 12233 56666555555554433
No 344
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.04 E-value=0.23 Score=54.29 Aligned_cols=53 Identities=15% Similarity=0.284 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
..+.++|.++++.++... .+.++|.||+|+||| +++..++..+.. .+.+|+..
T Consensus 62 lg~~~~~~~~l~~~~~~~-~GlilisG~tGSGKT-----T~l~all~~i~~--~~~~iiti 114 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP-HGIILVTGPTGSGKT-----TTLYSALSELNT--PEKNIITV 114 (264)
T ss_pred cCCCHHHHHHHHHHHhcC-CCEEEEECCCCCcHH-----HHHHHHHhhhCC--CCCeEEEE
Confidence 356889999999888643 346899999999999 666555444322 34455543
No 345
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.95 E-value=0.15 Score=59.77 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=18.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
-+||+|||||||| +++.+|...+
T Consensus 219 gVLL~GPPGTGKT------~LAraIA~el 241 (438)
T PTZ00361 219 GVILYGPPGTGKT------LLAKAVANET 241 (438)
T ss_pred EEEEECCCCCCHH------HHHHHHHHhh
Confidence 3789999999999 6777776644
No 346
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.93 E-value=0.22 Score=53.22 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=31.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
.++|.|+|||||| +....++..+++. +.+++..+..... +.+++.+.
T Consensus 26 ~~~i~G~~G~GKT-----tl~~~~~~~~~~~--g~~~~yi~~e~~~-~~~~~~~~ 72 (230)
T PRK08533 26 LILIEGDESTGKS-----ILSQRLAYGFLQN--GYSVSYVSTQLTT-TEFIKQMM 72 (230)
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHhC--CCcEEEEeCCCCH-HHHHHHHH
Confidence 6899999999999 5545666666554 6677777755544 44444443
No 347
>PRK13909 putative recombination protein RecB; Provisional
Probab=91.86 E-value=0.13 Score=65.03 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=37.2
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcc-----ccC----CCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHc
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNL-----ANE----NTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL 940 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~L-----A~~----~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~ 940 (961)
+.|+||+|||+ |-|.+..+--|..| ++. .+.+++|||++|= |++- .|-+..+|+++.+
T Consensus 327 ~~~~~ilVDEf-QDTs~~Q~~il~~L~~~~~~~~~~~~~~~lf~VGD~kQS---IY~F----RGA~~~~f~~~~~ 393 (910)
T PRK13909 327 SKISHILIDEF-QDTSVLQYKILLPLIDEIKSGEGQKKFRSFFYVGDVKQS---IYRF----RGGKKELFDKVSK 393 (910)
T ss_pred cCCCEEEEECc-cCCCHHHHHHHHHHHHHhhcccccCCCCeEEEEcCchhh---hhhh----cCCChHHHHHHHH
Confidence 57999999999 77887554433333 221 4689999999995 2221 2334556666543
No 348
>PRK06620 hypothetical protein; Validated
Probab=91.85 E-value=0.15 Score=53.96 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=12.2
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
+++|+||||+|||
T Consensus 46 ~l~l~Gp~G~GKT 58 (214)
T PRK06620 46 TLLIKGPSSSGKT 58 (214)
T ss_pred eEEEECCCCCCHH
Confidence 4799999999999
No 349
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.82 E-value=0.24 Score=51.36 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.+..+|.+ .....++|.|+||+||| +...+.+.++... +.+++..+
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT-----~l~~~~a~~~~~~--g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKT-----NIAIQLAVETAGQ--GKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEE
Confidence 45666753 12236799999999999 6666666655543 56666553
No 350
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.81 E-value=0.76 Score=51.62 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCccEEEEecCCCCChHH--HHHHHhccccCCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPE--TMIVLGNLANENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPE--aLIPLa~LA~~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+.+.+||||||-.+++.. +|+-+..=- ..+.+||+. ++.+|-|+|+|.
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEP-p~~~fILi~~~~~~Ll~TI~SR 173 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEP-GNGTLILIAPSPESLLPTIVSR 173 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCC-CCCeEEEEECChHhCcHHHHhh
Confidence 568999999997766543 233222111 256788876 789999999885
No 351
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.79 E-value=0.27 Score=54.95 Aligned_cols=35 Identities=6% Similarity=0.021 Sum_probs=24.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..++|+|++||||| +.++.+..++.+. +.+++++.
T Consensus 157 ~gl~L~G~~G~GKT-----hLa~Aia~~l~~~--g~~v~~~~ 191 (306)
T PRK08939 157 KGLYLYGDFGVGKS-----YLLAAIANELAKK--GVSSTLLH 191 (306)
T ss_pred CeEEEECCCCCCHH-----HHHHHHHHHHHHc--CCCEEEEE
Confidence 35899999999999 6666555565543 55665553
No 352
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=91.75 E-value=0.57 Score=59.92 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..|++-|++|+..+-.++ -++|..|.|.||| .+--.||.+.+++ +.|+..++|.-+-.++.-.+|...+
T Consensus 118 F~LD~fQ~~a~~~Ler~e---sVlV~ApTssGKT-----vVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 118 FELDPFQQEAIAILERGE---SVLVCAPTSSGKT-----VVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CCcCHHHHHHHHHHhCCC---cEEEEccCCCCcc-----hHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHh
Confidence 579999999999887665 3799999999999 4444456655654 8889999999888888888877643
No 353
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.69 E-value=0.25 Score=52.78 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=36.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
.++|.|+||+||| +.+.+++.++... .+.+|++.+-.. ..+.++.|+...
T Consensus 32 ~~~i~g~~G~GKT-----~l~~~~~~~~~~~-~g~~vl~iS~E~-~~~~~~~r~~~~ 81 (271)
T cd01122 32 LIILTAGTGVGKT-----TFLREYALDLITQ-HGVRVGTISLEE-PVVRTARRLLGQ 81 (271)
T ss_pred EEEEEcCCCCCHH-----HHHHHHHHHHHHh-cCceEEEEEccc-CHHHHHHHHHHH
Confidence 6799999999999 6666666665543 378899988766 456677777653
No 354
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.67 E-value=0.53 Score=51.95 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=36.9
Q ss_pred HHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEE-EEecchHHHHHHHHHHHhhC
Q 002130 739 NSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL-ICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 739 r~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RIL-VcAPSNsAaD~LleRL~~~l 810 (961)
++||..+-.+ .+.+...|.|+=||||| +++.++.+.+.. +..+. +.--.+.+.-.+++++...+
T Consensus 37 ~e~l~~l~~~i~d~qg~~~vtGevGsGKT------v~~Ral~~s~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 37 NEALLMLHAAIADGQGILAVTGEVGSGKT------VLRRALLASLNE--DQVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred hHHHHHHHHHHhcCCceEEEEecCCCchh------HHHHHHHHhcCC--CceEEEEecCcchhHHHHHHHHHHHh
Confidence 4555554433 24557899999999999 444566555543 32222 22233444556677776543
No 355
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.66 E-value=0.34 Score=53.58 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=15.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVL 778 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIl 778 (961)
=+|++|||||||| .++.++.
T Consensus 191 gvllygppg~gkt------ml~kava 210 (408)
T KOG0727|consen 191 GVLLYGPPGTGKT------MLAKAVA 210 (408)
T ss_pred ceEEeCCCCCcHH------HHHHHHh
Confidence 3799999999999 4555544
No 356
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.63 E-value=0.2 Score=52.42 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 742 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 742 V~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+..+|.+ .....++|.|+|||||| ....+.+..-+++ .+.+++..+..... +.+++++..
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT-----~l~~q~l~~~~~~-~ge~vlyvs~ee~~-~~l~~~~~s 69 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKT-----TLALQFLYNGLKN-FGEKVLYVSFEEPP-EELIENMKS 69 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHH-----HHHHHHHHHHHHH-HT--EEEEESSS-H-HHHHHHHHT
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcH-----HHHHHHHHHhhhh-cCCcEEEEEecCCH-HHHHHHHHH
Confidence 3455633 22346899999999999 5555555444442 16677777754444 667776654
No 357
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.61 E-value=0.19 Score=63.00 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.+++.+.+..+|..+...-.||+||||+||| +||+.+.+.+.
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKT------al~~~la~~i~ 225 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKT------AIAEGLAQRIV 225 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHH------HHHHHHHHHHH
Confidence 5778888888887653334589999999999 67777766554
No 358
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.60 E-value=0.28 Score=51.42 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=36.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
.++|.|+||+||| ..+.+++.++... .+.+||..+.-..+. .+++|+.
T Consensus 15 l~lI~G~~G~GKT-----~~~~~~~~~~~~~-~g~~vly~s~E~~~~-~~~~r~~ 62 (242)
T cd00984 15 LIIIAARPSMGKT-----AFALNIAENIAKK-QGKPVLFFSLEMSKE-QLLQRLL 62 (242)
T ss_pred EEEEEeCCCCCHH-----HHHHHHHHHHHHh-CCCceEEEeCCCCHH-HHHHHHH
Confidence 6899999999999 7777777776654 378999998877655 4445554
No 359
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=0.12 Score=61.47 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=18.9
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.|++|||||||| .||.-|-.++..
T Consensus 259 iLLyGPPGTGKT------LiARqIGkMLNA 282 (744)
T KOG0741|consen 259 ILLYGPPGTGKT------LIARQIGKMLNA 282 (744)
T ss_pred EEEECCCCCChh------HHHHHHHHHhcC
Confidence 589999999999 566666666654
No 360
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.56 E-value=0.32 Score=55.02 Aligned_cols=59 Identities=7% Similarity=-0.045 Sum_probs=35.4
Q ss_pred HHHHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHH
Q 002130 740 SAVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 740 ~AV~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleR 805 (961)
.++..+|. + ..-..++|+|||||||| +....++.+..+. +.+++....-+..-...+++
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKT-----tLaL~~~~~~~~~--g~~v~yId~E~~~~~~~a~~ 102 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKT-----TLALHAIAEAQKA--GGTAAFIDAEHALDPVYARK 102 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHH-----HHHHHHHHHHHHc--CCcEEEEcccchhHHHHHHH
Confidence 34556675 3 22337899999999999 5555666665553 55665555444443333333
No 361
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.55 E-value=0.52 Score=53.71 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=33.7
Q ss_pred CCCccEEEEecCCCCChHHHHHHHhccc---cCCCeEEEEeCC-CCCCccccCh
Q 002130 874 AGHFSHIFLIDASSATEPETMIVLGNLA---NENTRVIVTGAP-HNSPSRVRSD 923 (961)
Q Consensus 874 ~g~FdhVIIDEASQAtEPEaLIPLa~LA---~~~trVVLaGDp-kQLpPvV~S~ 923 (961)
.+.+.++|||||-.+++.. .=.|.... ...+.+||+.+. .+|.|+|+|.
T Consensus 130 ~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR 182 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAA-ANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR 182 (342)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc
Confidence 4578999999997766543 33332222 245778887765 8999999874
No 362
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.54 E-value=0.66 Score=55.06 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCce
Q 002130 736 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEM 815 (961)
Q Consensus 736 ~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~i 815 (961)
-+|+.-...+|.... .+++.|-.|+||| +-|-..++...... ...|..+-|-..||=.++.|+.+.+.-.--
T Consensus 49 w~~k~~F~~~l~~nQ--~~v~vGetgsGKt-----tQiPq~~~~~~~~~-~~~v~CTQprrvaamsva~RVadEMDv~lG 120 (699)
T KOG0925|consen 49 WEQKEEFLKLLLNNQ--IIVLVGETGSGKT-----TQIPQFVLEYELSH-LTGVACTQPRRVAAMSVAQRVADEMDVTLG 120 (699)
T ss_pred HHhHHHHHHHHhcCc--eEEEEecCCCCcc-----ccCcHHHHHHHHhh-ccceeecCchHHHHHHHHHHHHHHhccccc
Confidence 357777777776532 5789999999999 55545444433332 234444455678899999999985431111
Q ss_pred Eeccccccccc-CccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChH-HH
Q 002130 816 FRANAAFREAD-GVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP-ET 893 (961)
Q Consensus 816 lRV~a~sR~~~-~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP-Ea 893 (961)
-.+|..-|..+ .-+..+++||-..- .|++ ...+---+.+.+||+|||..-+-. +.
T Consensus 121 ~EVGysIrfEdC~~~~T~Lky~tDgm---------LlrE--------------ams~p~l~~y~viiLDeahERtlATDi 177 (699)
T KOG0925|consen 121 EEVGYSIRFEDCTSPNTLLKYCTDGM---------LLRE--------------AMSDPLLGRYGVIILDEAHERTLATDI 177 (699)
T ss_pred hhccccccccccCChhHHHHHhcchH---------HHHH--------------HhhCcccccccEEEechhhhhhHHHHH
Confidence 12233222222 23556677775320 0000 011112257889999999643322 34
Q ss_pred HHHHhc---cccCCCeEEEEeCC
Q 002130 894 MIVLGN---LANENTRVIVTGAP 913 (961)
Q Consensus 894 LIPLa~---LA~~~trVVLaGDp 913 (961)
|+-|.. +...+=++|+..++
T Consensus 178 LmGllk~v~~~rpdLk~vvmSat 200 (699)
T KOG0925|consen 178 LMGLLKEVVRNRPDLKLVVMSAT 200 (699)
T ss_pred HHHHHHHHHhhCCCceEEEeecc
Confidence 443321 11234467666654
No 363
>PRK06921 hypothetical protein; Provisional
Probab=91.51 E-value=0.2 Score=54.80 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=24.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
..++|+|++||||| +.+..++.++++. .+..|+.++.
T Consensus 118 ~~l~l~G~~G~GKT-----hLa~aia~~l~~~-~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKT-----HLLTAAANELMRK-KGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHH-----HHHHHHHHHHhhh-cCceEEEEEH
Confidence 46899999999999 5444444444432 2566766653
No 364
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.41 E-value=0.27 Score=50.52 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=25.6
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecch
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN 796 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSN 796 (961)
..++|.||||+||| ....+.+....+. +.+++..+-.+
T Consensus 13 ~i~~i~G~~GsGKT-----~l~~~~~~~~~~~--g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKT-----NICMILAVNAARQ--GKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHH-----HHHHHHHHHHHhC--CCeEEEEECCC
Confidence 36899999999999 5555555555543 55666555544
No 365
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=91.40 E-value=0.62 Score=55.28 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHhccCC--CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSFEGQ--SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~--~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..|=+-|++-+.-+...+.. +==++----|-||| +.+|.-++....+..-||+||+- |+-+-.+.+..+
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKT--------IQtIaLllae~~ra~tLVvaP~V-AlmQW~nEI~~~ 253 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKT--------IQTIALLLAEVDRAPTLVVAPTV-ALMQWKNEIERH 253 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchH--------HHHHHHHHhccccCCeeEEccHH-HHHHHHHHHHHh
Confidence 35668899988876654311 01156667899999 23444455556677899999974 333333344332
Q ss_pred CCC-CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh---ccCCCC-----------
Q 002130 810 IPA-SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH---NQGITA----------- 874 (961)
Q Consensus 810 l~~-~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~---~~~~~~----------- 874 (961)
-.+ .+++-.+...|+ ...++|+.++||.+|........ ..|+++
T Consensus 254 T~gslkv~~YhG~~R~---------------------~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlL 312 (791)
T KOG1002|consen 254 TSGSLKVYIYHGAKRD---------------------KNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLL 312 (791)
T ss_pred ccCceEEEEEeccccc---------------------CCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchh
Confidence 221 222222222221 23467788999999887654321 233321
Q ss_pred --CCccEEEEecCCCCChH-----HHHHHHhccccCCCeEEEEeCCCCC
Q 002130 875 --GHFSHIFLIDASSATEP-----ETMIVLGNLANENTRVIVTGAPHNS 916 (961)
Q Consensus 875 --g~FdhVIIDEASQAtEP-----EaLIPLa~LA~~~trVVLaGDpkQL 916 (961)
-.|--||+|||.-+-+- -+...|. ...|+.|.|-|-|-
T Consensus 313 Hsi~~~RiIlDEAH~IK~R~snTArAV~~L~----tt~rw~LSGTPLQN 357 (791)
T KOG1002|consen 313 HSIKFYRIILDEAHNIKDRQSNTARAVFALE----TTYRWCLSGTPLQN 357 (791)
T ss_pred hhceeeeeehhhhcccccccccHHHHHHhhH----hhhhhhccCCcchh
Confidence 13778999999765443 3333332 45799999999885
No 366
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=91.37 E-value=0.48 Score=58.82 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC-------CCCeEEEEecchHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-------PKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-------p~~RILVcAPSNsAaD~LleRL~ 807 (961)
-++|+ .++.|-. .+.++|.|-.|+||| +-|=.. ++++. .+.-|-|+-|-..||-.+++|+.
T Consensus 259 aeEq~-IMEaIn~---n~vvIIcGeTGsGKT-----TQvPQF---LYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa 326 (1172)
T KOG0926|consen 259 AEEQR-IMEAINE---NPVVIICGETGSGKT-----TQVPQF---LYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVA 326 (1172)
T ss_pred HHHHH-HHHHhhc---CCeEEEecCCCCCcc-----ccchHH---HHHcccCCccCCCCCeeeecCchHHHHHHHHHHHH
Confidence 34443 4455433 346899999999999 333222 22221 13468999999999999999999
Q ss_pred hhCC
Q 002130 808 KDIP 811 (961)
Q Consensus 808 ~~l~ 811 (961)
..+.
T Consensus 327 ~EL~ 330 (1172)
T KOG0926|consen 327 FELG 330 (1172)
T ss_pred HHhc
Confidence 8543
No 367
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.33 E-value=0.71 Score=52.18 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=33.3
Q ss_pred CCCccEEEEecCCCCChHHHHHHHhccc---cCCCeEEEEeC-CCCCCccccCh
Q 002130 874 AGHFSHIFLIDASSATEPETMIVLGNLA---NENTRVIVTGA-PHNSPSRVRSD 923 (961)
Q Consensus 874 ~g~FdhVIIDEASQAtEPEaLIPLa~LA---~~~trVVLaGD-pkQLpPvV~S~ 923 (961)
.+.+.++|||+|-.+++..+ =.|.... ...+.+||+.+ +.+|-|+|+|.
T Consensus 106 ~~~~kV~iI~~ae~m~~~Aa-NaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESAS-NALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred cCCceEEEecchhhhCHHHH-HHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 35688999999977765433 3332222 24578888755 68999999885
No 368
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.29 E-value=0.7 Score=55.11 Aligned_cols=112 Identities=13% Similarity=0.028 Sum_probs=55.8
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHh---CCCCeEEEEecchHHHHHHHH---HHHhhCCCCceEecccccccccCc
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRR---SPKSRILICAPWNRTCDKLME---CLMKDIPASEMFRANAAFREADGV 828 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~---~p~~RILVcAPSNsAaD~Lle---RL~~~l~~~~ilRV~a~sR~~~~V 828 (961)
+-..-.|||||- -.++-++-.++-+ .+-.||||.+||..-|-++.. .|..+.. .
T Consensus 222 ca~A~TGsGKTA----AF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~-I--------------- 281 (691)
T KOG0338|consen 222 CACAATGSGKTA----AFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTD-I--------------- 281 (691)
T ss_pred hheecccCCchh----hhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhcc-c---------------
Confidence 344568999991 1222233333332 234699999999876554433 3332211 0
Q ss_pred cHHHHHhhhhcccccCCChhhhhc-cceEEEEeeccc-hhhhc-cCCCCCCccEEEEecCCCCChH
Q 002130 829 SDEIFQVSLVERECFSCPPLEELR-QYKVISSTFVSS-FRLHN-QGITAGHFSHIFLIDASSATEP 891 (961)
Q Consensus 829 ~~~I~~y~~~~~~~F~~p~~e~L~-~~rVVvtT~ssa-g~L~~-~~~~~g~FdhVIIDEASQAtEP 891 (961)
.+|+..++.-.-.+...|+ .-+|||+|..-. .++++ ..|.-....++|+|||-.++|-
T Consensus 282 -----~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLee 342 (691)
T KOG0338|consen 282 -----TVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEE 342 (691)
T ss_pred -----eeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHH
Confidence 1111111111111222333 457999987421 22222 2233334567999999887764
No 369
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=91.26 E-value=0.19 Score=65.31 Aligned_cols=41 Identities=12% Similarity=0.365 Sum_probs=32.8
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcccc--CCCeEEEEeCCCCC
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTGAPHNS 916 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~--~~trVVLaGDpkQL 916 (961)
..|+||+|||. |-|.|..+--|..+.. ....+++|||++|-
T Consensus 376 ~~y~~ilIDEf-QDT~~~Q~~il~~L~~~~~~~~l~~VGDpkQs 418 (1181)
T PRK10876 376 TRYPVAMIDEF-QDTDPQQYRIFRRIYRHQPETALLLIGDPKQA 418 (1181)
T ss_pred hCCCEEEEECC-ccCCHHHHHHHHHHHcCCCCCeEEEEeCCccc
Confidence 58999999998 8888876666665543 34689999999996
No 370
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.09 E-value=0.81 Score=51.88 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=33.6
Q ss_pred CCCccEEEEecCCCCChHHHHHHHhccc---cCCCeEEEEeC-CCCCCccccCh
Q 002130 874 AGHFSHIFLIDASSATEPETMIVLGNLA---NENTRVIVTGA-PHNSPSRVRSD 923 (961)
Q Consensus 874 ~g~FdhVIIDEASQAtEPEaLIPLa~LA---~~~trVVLaGD-pkQLpPvV~S~ 923 (961)
.|.+.+||||+|-.+++-.+ =.|...- ...+.+||+-+ +.+|.|+|+|.
T Consensus 106 ~g~~kV~iI~~ae~m~~~Aa-NaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAA-NALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred cCCceEEEEcchHhhCHHHH-HHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 35788999999977665433 3332222 24578888877 48899999874
No 371
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.04 E-value=0.2 Score=65.47 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=30.9
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccccC---CCeEEEEeCCCCC
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLANE---NTRVIVTGAPHNS 916 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~~---~trVVLaGDpkQL 916 (961)
..|+||+|||. |-|.+...-=|..++.. ..++++|||++|=
T Consensus 387 ~rf~~ILVDEf-QDTn~lQ~~Il~~L~~~~~~~~nLf~VGD~KQS 430 (1232)
T TIGR02785 387 EKFKEVLVDEY-QDTNLLQESILQLLKRGEEDEGNLFMVGDVKQS 430 (1232)
T ss_pred hCCCEEEEECC-cCCCHHHHHHHHHHhccCCCCCeEEEEcCCcch
Confidence 58999999998 77877554444444443 4689999999994
No 372
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.04 E-value=0.3 Score=50.09 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 791 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV 791 (961)
..++++|.+.+...+... ..++|.||+|+||| |+..++..++. +..+++.
T Consensus 8 g~~~~~~~~~l~~~v~~g--~~i~I~G~tGSGKT------Tll~aL~~~i~--~~~~~i~ 57 (186)
T cd01130 8 GTFSPLQAAYLWLAVEAR--KNILISGGTGSGKT------TLLNALLAFIP--PDERIIT 57 (186)
T ss_pred CCCCHHHHHHHHHHHhCC--CEEEEECCCCCCHH------HHHHHHHhhcC--CCCCEEE
Confidence 357899999999888763 25799999999999 55566666654 3444443
No 373
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.00 E-value=0.35 Score=59.82 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 737 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 737 eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+..-+..+|......-.|++|||||||| ++++++.+.+
T Consensus 189 ~ei~~~~~~L~~~~~~n~lL~G~pG~GKT------~l~~~la~~~ 227 (731)
T TIGR02639 189 DELERTIQVLCRRKKNNPLLVGEPGVGKT------AIAEGLALRI 227 (731)
T ss_pred HHHHHHHHHHhcCCCCceEEECCCCCCHH------HHHHHHHHHH
Confidence 33334557776543334589999999999 6677766655
No 374
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.98 E-value=0.12 Score=63.71 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=17.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
+|++|||||||| .||.||+--
T Consensus 708 ILLYGPPGTGKT------LlAKAVATE 728 (953)
T KOG0736|consen 708 ILLYGPPGTGKT------LLAKAVATE 728 (953)
T ss_pred eEEECCCCCchH------HHHHHHHhh
Confidence 699999999999 677777643
No 375
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=90.96 E-value=0.43 Score=48.91 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=29.4
Q ss_pred CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 750 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 750 ~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+.|+||+|.+||||+ .+|.+|.+.-.+ .+...+..--+.-..+.+-..|..
T Consensus 21 ~~~pVlI~GE~GtGK~------~lA~~IH~~s~r-~~~pfi~vnc~~~~~~~~e~~LFG 72 (168)
T PF00158_consen 21 SDLPVLITGETGTGKE------LLARAIHNNSPR-KNGPFISVNCAALPEELLESELFG 72 (168)
T ss_dssp STS-EEEECSTTSSHH------HHHHHHHHCSTT-TTS-EEEEETTTS-HHHHHHHHHE
T ss_pred CCCCEEEEcCCCCcHH------HHHHHHHHhhhc-ccCCeEEEehhhhhcchhhhhhhc
Confidence 3578999999999999 677777663332 223333332333344555555553
No 376
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=90.92 E-value=0.22 Score=60.42 Aligned_cols=37 Identities=32% Similarity=0.320 Sum_probs=29.0
Q ss_pred CccEEEEecCCCCChHHHHHHHhcccc---CCCeEEEEeC
Q 002130 876 HFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVTGA 912 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPEaLIPLa~LA~---~~trVVLaGD 912 (961)
..++||+|||.-|++++.-.-|-.+.. ++.-||-||=
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~H 572 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH 572 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEecc
Confidence 578999999999999998877765543 4567887874
No 377
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.85 E-value=0.53 Score=53.10 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=29.1
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcccc---CCCeEEEEeCC-CCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVTGAP-HNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~---~~trVVLaGDp-kQLpPvV~S~ 923 (961)
+.+.+||||+| +.+.+++--.|..... ..+.+||+... ..+.|++.|.
T Consensus 112 ~~~kV~iiEp~-~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR 163 (325)
T PRK08699 112 GGLRVILIHPA-ESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR 163 (325)
T ss_pred CCceEEEEech-hhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH
Confidence 45777777777 4555555444433322 24667777765 5688887753
No 378
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=90.80 E-value=0.49 Score=56.48 Aligned_cols=139 Identities=13% Similarity=0.013 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH---------HhCCCCeEEEEecchHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR---------RRSPKSRILICAPWNRTCDKLME 804 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl---------k~~p~~RILVcAPSNsAaD~Lle 804 (961)
-.+-|++|+=..|..++ .|...-.|+|||+.++ .-++..|. ...-+.+-+|.|||..-|.+|-+
T Consensus 268 ptpIqR~aipl~lQ~rD---~igvaETgsGktaaf~----ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIee 340 (673)
T KOG0333|consen 268 PTPIQRQAIPLGLQNRD---PIGVAETGSGKTAAFL----IPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEE 340 (673)
T ss_pred CchHHHhhccchhccCC---eeeEEeccCCccccch----hhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHH
Confidence 36789999887776653 3667789999994322 22222222 22346677889999999999887
Q ss_pred HHHhhC--CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccc-hhhhccCCCCCCccEEE
Q 002130 805 CLMKDI--PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSS-FRLHNQGITAGHFSHIF 881 (961)
Q Consensus 805 RL~~~l--~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssa-g~L~~~~~~~g~FdhVI 881 (961)
.-.++. -+.++++|....+ - ++..| ..-+.+.||++|..-. ..|.+..+.-...++|+
T Consensus 341 Et~kf~~~lg~r~vsvigg~s------~--------EEq~f-----qls~gceiviatPgrLid~Lenr~lvl~qctyvv 401 (673)
T KOG0333|consen 341 ETNKFGKPLGIRTVSVIGGLS------F--------EEQGF-----QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVV 401 (673)
T ss_pred HHHHhcccccceEEEEecccc------h--------hhhhh-----hhhccceeeecCchHHHHHHHHHHHHhccCceEe
Confidence 665522 1345555543211 0 11222 2236788999987533 22334444556899999
Q ss_pred EecCCCCC----hHHHHHHHh
Q 002130 882 LIDASSAT----EPETMIVLG 898 (961)
Q Consensus 882 IDEASQAt----EPEaLIPLa 898 (961)
+|||..+. ||+..--|.
T Consensus 402 ldeadrmiDmgfE~dv~~iL~ 422 (673)
T KOG0333|consen 402 LDEADRMIDMGFEPDVQKILE 422 (673)
T ss_pred ccchhhhhcccccHHHHHHHH
Confidence 99998754 555544443
No 379
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.68 E-value=0.13 Score=49.12 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.||||+|||
T Consensus 2 ii~~G~pgsGKS 13 (143)
T PF13671_consen 2 IILCGPPGSGKS 13 (143)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 380
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.62 E-value=1.4 Score=48.84 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=22.0
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..++|.|++|.||| +++..+...+.. .+.+|.+++
T Consensus 76 ~~i~~~G~~g~GKT-----tl~~~l~~~l~~--~~~~v~~i~ 110 (270)
T PRK06731 76 QTIALIGPTGVGKT-----TTLAKMAWQFHG--KKKTVGFIT 110 (270)
T ss_pred CEEEEECCCCCcHH-----HHHHHHHHHHHH--cCCeEEEEe
Confidence 35789999999999 555444444333 245565443
No 381
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=90.61 E-value=1.4 Score=55.01 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..+.+.|.+|++....- .+...++|.+.=|-||+ +.+|. ++.++.+.....+|.|+||+-.|++.|.+-+.+.
T Consensus 210 l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKS-A~lGi----~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~ 284 (758)
T COG1444 210 LCLTEDQAEALEILERLLDAPKRALVLTADRGRGKS-AALGI----ALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKG 284 (758)
T ss_pred hhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHh-HHHhH----HHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHh
Confidence 45678888877654432 12337899999999999 33332 2322232212569999999999999999988763
No 382
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=0.16 Score=57.36 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=19.0
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.-++|||||||||| .++++|..-+
T Consensus 167 kg~ll~GppGtGKT------lla~~Vaa~m 190 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKT------LLARAVAATM 190 (388)
T ss_pred ceeEEeCCCCCchh------HHHHHHHHhc
Confidence 35689999999999 6778876543
No 383
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.55 E-value=0.45 Score=53.92 Aligned_cols=50 Identities=8% Similarity=0.029 Sum_probs=31.5
Q ss_pred HHHHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecch
Q 002130 740 SAVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN 796 (961)
Q Consensus 740 ~AV~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSN 796 (961)
.++..+|. + +.-..+.|+||||+||| +....++....+. +.+++....-+
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKT-----tLal~~~~~~~~~--g~~~vyId~E~ 93 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKT-----TLALHAIAEAQKL--GGTVAFIDAEH 93 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHHHc--CCCEEEECccc
Confidence 34566776 3 22347899999999999 5555556555443 45555554433
No 384
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=90.54 E-value=0.33 Score=59.03 Aligned_cols=50 Identities=12% Similarity=-0.004 Sum_probs=32.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..++.|||||||| +++.++.+.+....-..+++...++--.+.++..+..
T Consensus 39 ~~ll~G~pG~GKT------~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~ 88 (608)
T TIGR00764 39 NVLLIGEPGVGKS------MLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPA 88 (608)
T ss_pred CEEEECCCCCCHH------HHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHH
Confidence 6789999999999 7778877766532114566665554444445555544
No 385
>PRK13695 putative NTPase; Provisional
Probab=90.48 E-value=1.4 Score=44.52 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=18.5
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeE
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI 789 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RI 789 (961)
++|.|++|+||| +.+ ..|.+.+.. .+.++
T Consensus 3 i~ltG~~G~GKT-----Tll-~~i~~~l~~-~G~~~ 31 (174)
T PRK13695 3 IGITGPPGVGKT-----TLV-LKIAELLKE-EGYKV 31 (174)
T ss_pred EEEECCCCCCHH-----HHH-HHHHHHHHH-CCCeE
Confidence 579999999999 444 444444443 24443
No 386
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=90.47 E-value=1.3 Score=49.08 Aligned_cols=136 Identities=10% Similarity=-0.007 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh---
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK--- 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~--- 808 (961)
..+.+-|.-++.....+. |++--.|=||| .++ ++..++....+..|=|+|.+..-|..=.+.+..
T Consensus 76 ~~p~~vQll~~l~L~~G~-----laEm~TGEGKT-----li~--~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR-----LAEMKTGEGKT-----LIA--ALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp ----HHHHHHHHHHHTTS-----EEEESTTSHHH-----HHH--HHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccce-----eEEecCCCCcH-----HHH--HHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHH
Confidence 456889999987665443 89999999999 333 233344445688999999887666544444433
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh--hhcc------CCCCCCccEE
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHNQ------GITAGHFSHI 880 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~~------~~~~g~FdhV 880 (961)
.++ ..+--+. ...+.+ .......++|+-+|....+. |... ......|+++
T Consensus 144 ~LG-lsv~~~~------~~~~~~---------------~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ 201 (266)
T PF07517_consen 144 FLG-LSVGIIT------SDMSSE---------------ERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFA 201 (266)
T ss_dssp HTT---EEEEE------TTTEHH---------------HHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEE
T ss_pred Hhh-hccccCc------cccCHH---------------HHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEE
Confidence 111 1110000 011111 11234566788888877764 2211 1113579999
Q ss_pred EEecCCCCChHHHHHHHhccccCCCeEEEEe
Q 002130 881 FLIDASSATEPETMIVLGNLANENTRVIVTG 911 (961)
Q Consensus 881 IIDEASQAtEPEaLIPLa~LA~~~trVVLaG 911 (961)
|||||-.++ +-...+.+++.|
T Consensus 202 ivDEvDs~L----------iDea~~pl~is~ 222 (266)
T PF07517_consen 202 IVDEVDSIL----------IDEARTPLIISG 222 (266)
T ss_dssp EECTHHHHT----------TTGCCSEEEEEE
T ss_pred EEeccceEE----------EecCcccccccc
Confidence 999994321 334568999999
No 387
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.35 E-value=0.44 Score=56.24 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=40.5
Q ss_pred HHHHHHHhcc--CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 740 SAVHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 740 ~AV~~ILs~~--~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
..+..+|.+- ..-.+||.|||||||| +.....+...+++ +.++|+++.-.+. +.|+++..
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt-----~l~~~f~~~~~~~--ge~~~y~s~eEs~-~~i~~~~~ 311 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKT-----LLVSKFLENACAN--KERAILFAYEESR-AQLLRNAY 311 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEEeeCCH-HHHHHHHH
Confidence 4466677652 2236899999999999 6666666665554 7899998865554 45555544
No 388
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=0.23 Score=60.91 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=23.8
Q ss_pred HHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHH
Q 002130 740 SAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAV 777 (961)
Q Consensus 740 ~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaI 777 (961)
-||+.......-+..++.||||+||| ++|..||+++
T Consensus 339 LAV~~l~~~~kGpILcLVGPPGVGKT--SLgkSIA~al 374 (782)
T COG0466 339 LAVQKLTKKLKGPILCLVGPPGVGKT--SLGKSIAKAL 374 (782)
T ss_pred HHHHHHhccCCCcEEEEECCCCCCch--hHHHHHHHHh
Confidence 34444433333356789999999999 5666666664
No 389
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=90.24 E-value=0.17 Score=50.78 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=16.2
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
++|.||||+||| |++..+.+
T Consensus 2 i~i~G~pGsGKs------t~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKG------TQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 589999999999 66666554
No 390
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.20 E-value=0.17 Score=46.84 Aligned_cols=22 Identities=5% Similarity=-0.043 Sum_probs=16.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.|+||+||| ||+..+.+.+
T Consensus 1 I~i~G~~GsGKt------Tia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKT------TIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHH------HHHHHHHHHH
T ss_pred CEEECCCCCCHH------HHHHHHHHHH
Confidence 379999999999 6666555443
No 391
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=90.20 E-value=0.59 Score=57.93 Aligned_cols=131 Identities=11% Similarity=-0.030 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCce
Q 002130 736 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEM 815 (961)
Q Consensus 736 ~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~i 815 (961)
+-|.-+....+.+. +.+-..|.||| .+.+-++ ++....+..|-|+|++..-|..=.+.+...+... -
T Consensus 81 dvQlig~l~Ll~G~-----VaEM~TGEGKT-----LvA~l~a--~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~L-G 147 (764)
T PRK12326 81 DVQLLGALRLLAGD-----VIEMATGEGKT-----LAGAIAA--AGYALQGRRVHVITVNDYLARRDAEWMGPLYEAL-G 147 (764)
T ss_pred hHHHHHHHHHhCCC-----cccccCCCCHH-----HHHHHHH--HHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhc-C
Confidence 34555544443332 44555699999 3333222 2333458999999999877766666655422110 0
Q ss_pred EecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh--hhcc------CCCCCCccEEEEecCCC
Q 002130 816 FRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHNQ------GITAGHFSHIFLIDASS 887 (961)
Q Consensus 816 lRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~~------~~~~g~FdhVIIDEASQ 887 (961)
++++.- ....+.+- +....+++|+-+|....|. |... ......|.++|||||-.
T Consensus 148 Lsvg~i---~~~~~~~e---------------rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDS 209 (764)
T PRK12326 148 LTVGWI---TEESTPEE---------------RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADS 209 (764)
T ss_pred CEEEEE---CCCCCHHH---------------HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhh
Confidence 122211 01122221 1233456677677665553 2211 11234588999999976
Q ss_pred CChHHHHHHH
Q 002130 888 ATEPETMIVL 897 (961)
Q Consensus 888 AtEPEaLIPL 897 (961)
++--|+-.||
T Consensus 210 iLIDeArtPL 219 (764)
T PRK12326 210 VLVDEALVPL 219 (764)
T ss_pred heeccccCce
Confidence 6555544443
No 392
>KOG2108 consensus 3'-5' DNA helicase [Replication, recombination and repair]
Probab=90.17 E-value=0.15 Score=63.37 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC--CCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~--p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..||..|+.++..=+... -+|.| ||+||| .++.+-+++++... +..-|++.|.+|.|+|.+.+++...
T Consensus 12 ~~l~~~q~~~~~~~~~~~----rviag-pgsgkt-----~~lt~~v~yli~~~~ik~~eI~~~t~tnka~~~~~~~l~~i 81 (853)
T KOG2108|consen 12 SLLNKSQRFSALSPLRRK----RVIAG-PGSGKT-----LVLTERVAYLINFNNIKPDEILINTGTNKAADSIKLNLIAI 81 (853)
T ss_pred hhhhhhhhhhhcCCCccc----ceeec-CCCCcc-----chhhHHHHHHHhccCCCHHHHHHHhcCCccHHHHHHhHHHH
Confidence 467999998877533322 27888 999999 88888888877642 2236899999999999999999873
No 393
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=0.21 Score=61.80 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=30.4
Q ss_pred cceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHh
Q 002130 853 QYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLG 898 (961)
Q Consensus 853 ~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa 898 (961)
..-||+++|.-...|..+-+++|.||-.|-+.--..++-+.+.-+.
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHH
Confidence 4456677777777676666788999876666555556655555443
No 394
>PHA00729 NTP-binding motif containing protein
Probab=90.14 E-value=0.18 Score=54.55 Aligned_cols=21 Identities=10% Similarity=-0.028 Sum_probs=16.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
-++|.|+|||||| |++.+|..
T Consensus 19 nIlItG~pGvGKT------~LA~aLa~ 39 (226)
T PHA00729 19 SAVIFGKQGSGKT------TYALKVAR 39 (226)
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4689999999999 55555544
No 395
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=89.98 E-value=0.23 Score=46.64 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=10.9
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
+.|+||||+|||
T Consensus 1 I~i~G~~G~GKS 12 (107)
T PF00910_consen 1 IWIYGPPGIGKS 12 (107)
T ss_pred CEEECCCCCCHH
Confidence 369999999999
No 396
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.88 E-value=0.35 Score=57.42 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
...+.++|.++++.++... .+.++|.||.|+||| +|+..++..+
T Consensus 223 ~Lg~~~~~~~~l~~~~~~~-~GlilitGptGSGKT-----TtL~a~L~~l 266 (486)
T TIGR02533 223 TLGMSPELLSRFERLIRRP-HGIILVTGPTGSGKT-----TTLYAALSRL 266 (486)
T ss_pred HcCCCHHHHHHHHHHHhcC-CCEEEEEcCCCCCHH-----HHHHHHHhcc
Confidence 3467899999999988654 347899999999999 7876655544
No 397
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.83 E-value=0.49 Score=59.74 Aligned_cols=48 Identities=17% Similarity=0.042 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh------CCCCeEEEE
Q 002130 739 NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR------SPKSRILIC 792 (961)
Q Consensus 739 r~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~------~p~~RILVc 792 (961)
.+.+..||..+...-.|++||||+||| +|++++.+.+.. ..+.+|+..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT------~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKT------AIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHH------HHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 445555666654445689999999999 677777765532 125666654
No 398
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=89.79 E-value=0.17 Score=58.52 Aligned_cols=25 Identities=12% Similarity=-0.146 Sum_probs=19.6
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+..++|+|||||||| .++++|..-+
T Consensus 148 PlgllL~GPPGcGKT------llAraiA~el 172 (413)
T PLN00020 148 PLILGIWGGKGQGKS------FQCELVFKKM 172 (413)
T ss_pred CeEEEeeCCCCCCHH------HHHHHHHHHc
Confidence 345789999999999 6777776654
No 399
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.77 E-value=0.31 Score=53.54 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=26.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE-ecc
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APW 795 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc-APS 795 (961)
.+++.||+|.||| +|++.++..+.+. +.+|++. +-+
T Consensus 74 vi~l~G~~G~GKT-----Tt~akLA~~l~~~--g~~V~li~~D~ 110 (272)
T TIGR00064 74 VILFVGVNGVGKT-----TTIAKLANKLKKQ--GKSVLLAAGDT 110 (272)
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHhc--CCEEEEEeCCC
Confidence 4567799999999 8888887766443 6677654 444
No 400
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=89.71 E-value=0.56 Score=59.79 Aligned_cols=43 Identities=7% Similarity=0.030 Sum_probs=37.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCD 800 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD 800 (961)
-+.|.-+.||||| .|.+.+|.++.+..+-.++||+.|+++-..
T Consensus 61 n~~~~M~TGtGKT-----~~~~~~i~~l~~~~~~~~fii~vp~~aI~e 103 (986)
T PRK15483 61 NIDIKMETGTGKT-----YVYTRLMYELHQKYGLFKFIIVVPTPAIKE 103 (986)
T ss_pred eEEEEeCCCCCHH-----HHHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence 4678899999999 999999999999878889999999976443
No 401
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.61 E-value=0.29 Score=53.86 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=13.0
Q ss_pred CCceEeccCCCCCC
Q 002130 752 SPYLLEGPLCNNFV 765 (961)
Q Consensus 752 ~P~LI~GPPGTGKT 765 (961)
.|+||.||+|||||
T Consensus 34 ~pvLl~G~~GtGKT 47 (272)
T PF12775_consen 34 RPVLLVGPSGTGKT 47 (272)
T ss_dssp EEEEEESSTTSSHH
T ss_pred CcEEEECCCCCchh
Confidence 37899999999999
No 402
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.57 E-value=0.34 Score=50.32 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=22.5
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
+.++|.||+|+||| +++..++.. +....+.+|+..
T Consensus 2 GlilI~GptGSGKT-----Tll~~ll~~-~~~~~~~~i~t~ 36 (198)
T cd01131 2 GLVLVTGPTGSGKS-----TTLAAMIDY-INKNKTHHILTI 36 (198)
T ss_pred cEEEEECCCCCCHH-----HHHHHHHHH-hhhcCCcEEEEE
Confidence 35799999999999 666444444 433334566554
No 403
>PRK10436 hypothetical protein; Provisional
Probab=89.56 E-value=0.43 Score=56.39 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
..+.+.|.+.++.++... .+.+||.||.|+||| +|+..++..+
T Consensus 200 LG~~~~~~~~l~~~~~~~-~GliLvtGpTGSGKT-----TtL~a~l~~~ 242 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQP-QGLILVTGPTGSGKT-----VTLYSALQTL 242 (462)
T ss_pred cCcCHHHHHHHHHHHHhc-CCeEEEECCCCCChH-----HHHHHHHHhh
Confidence 467889999999888654 457899999999999 8887766654
No 404
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.45 E-value=0.18 Score=61.04 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.1
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
+|||||||+||| .|+.+|..
T Consensus 226 vLlHGPPGCGKT------~lA~AiAg 245 (802)
T KOG0733|consen 226 VLLHGPPGCGKT------SLANAIAG 245 (802)
T ss_pred eeeeCCCCccHH------HHHHHHhh
Confidence 699999999999 56666553
No 405
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=89.42 E-value=0.21 Score=48.59 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=18.3
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
..|++|+|.+||||+ ++|++|.+.
T Consensus 21 ~~pvli~GE~GtGK~------~~A~~lh~~ 44 (138)
T PF14532_consen 21 SSPVLITGEPGTGKS------LLARALHRY 44 (138)
T ss_dssp SS-EEEECCTTSSHH------HHHHCCHHT
T ss_pred CCcEEEEcCCCCCHH------HHHHHHHhh
Confidence 458999999999999 566666553
No 406
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=89.42 E-value=0.21 Score=55.10 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=26.2
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.=+|++|||||||| .|+.++++. .. |+.-....-+|+++++.
T Consensus 182 KGvlLygppgtGkt------LlaraVahh----t~-----c~firvsgselvqk~ig 223 (404)
T KOG0728|consen 182 KGVLLYGPPGTGKT------LLARAVAHH----TD-----CTFIRVSGSELVQKYIG 223 (404)
T ss_pred cceEEecCCCCchh------HHHHHHHhh----cc-----eEEEEechHHHHHHHhh
Confidence 34799999999999 566666532 22 33333344566666653
No 407
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=89.26 E-value=0.67 Score=54.81 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=40.2
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+..+|.+ .....++|.|+||+||| ......+...++. +.++++.+.... .+.+++++..
T Consensus 261 ~lD~~l~GG~~~g~~~li~G~~G~GKT-----~l~~~~~~~~~~~--g~~~~yis~e~~-~~~i~~~~~~ 322 (509)
T PRK09302 261 DLDEMLGGGFFRGSIILVSGATGTGKT-----LLASKFAEAACRR--GERCLLFAFEES-RAQLIRNARS 322 (509)
T ss_pred HHHHhhcCCCCCCcEEEEEcCCCCCHH-----HHHHHHHHHHHhC--CCcEEEEEecCC-HHHHHHHHHH
Confidence 34556643 22236789999999999 6666666555554 788888887765 5566666543
No 408
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=89.22 E-value=0.34 Score=59.36 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=35.4
Q ss_pred HHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 738 SNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 738 Qr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
|.+|+..+... .....++|.|||||||| |++.++.+.+....-..+++...+...-..+++.+.
T Consensus 36 q~~a~~~L~~~~~~~~~~l~~G~~G~GKt------tla~~l~~~l~~~~~~~~~~~~np~~~~~~~~~~v~ 100 (637)
T PRK13765 36 QEHAVEVIKKAAKQRRHVMMIGSPGTGKS------MLAKAMAELLPKEELQDILVYPNPEDPNNPKIRTVP 100 (637)
T ss_pred hHHHHHHHHHHHHhCCeEEEECCCCCcHH------HHHHHHHHHcChHhHHHheEeeCCCcchHHHHHHHH
Confidence 55555544332 11236899999999999 677777666532111345544443333444444444
No 409
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=89.19 E-value=0.37 Score=58.74 Aligned_cols=35 Identities=11% Similarity=0.031 Sum_probs=24.8
Q ss_pred HHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 742 VHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 742 V~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
+...+......+++|.|||||||| |++.+|....+
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKT------TLAr~i~~~~~ 200 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKT------TAARLALEEAK 200 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHH------HHHHHHHHhhh
Confidence 333333333457899999999999 78888877664
No 410
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=89.14 E-value=2.9 Score=53.82 Aligned_cols=135 Identities=10% Similarity=0.007 Sum_probs=80.4
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceE-ecccccccccCccHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMF-RANAAFREADGVSDEI 832 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~il-RV~a~sR~~~~V~~~I 832 (961)
.+||==-|+||| .|++-+...+++......|++++--+---+++.+-+...-...... +... -.++
T Consensus 276 G~IWHtqGSGKT-----lTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s--------~~~L 342 (962)
T COG0610 276 GYIWHTQGSGKT-----LTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAES--------TSEL 342 (962)
T ss_pred eEEEeecCCchH-----HHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccC--------HHHH
Confidence 589999999999 8888888888877677899999999999888888887521111000 1110 0111
Q ss_pred HHhhhhcccccCCChhhhhccceEEEEeeccchhhhccC---CCCCCccEEEEecCCCCChHHHHHHHhccccCCCeEEE
Q 002130 833 FQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG---ITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIV 909 (961)
Q Consensus 833 ~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~---~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVL 909 (961)
++... . ...+||+||--..+...... ...+.==+||||||....-.+.---+...-.+..-+=+
T Consensus 343 k~~l~------------~-~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~~~~a~~~gF 409 (962)
T COG0610 343 KELLE------------D-GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLLKKALKKAIFIGF 409 (962)
T ss_pred HHHHh------------c-CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHHHHHhccceEEEe
Confidence 11000 0 13478998877665433221 01222236899999877666543332222223556666
Q ss_pred EeCCC
Q 002130 910 TGAPH 914 (961)
Q Consensus 910 aGDpk 914 (961)
.|.|-
T Consensus 410 TGTPi 414 (962)
T COG0610 410 TGTPI 414 (962)
T ss_pred eCCcc
Confidence 77653
No 411
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.13 E-value=0.48 Score=56.35 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
..+++.|.+.+.+++... .+.+||.||.|+||| +|+-.++.++..
T Consensus 240 Lg~~~~~~~~~~~~~~~p-~GliLvTGPTGSGKT-----TTLY~~L~~ln~ 284 (500)
T COG2804 240 LGMSPFQLARLLRLLNRP-QGLILVTGPTGSGKT-----TTLYAALSELNT 284 (500)
T ss_pred hCCCHHHHHHHHHHHhCC-CeEEEEeCCCCCCHH-----HHHHHHHHHhcC
Confidence 456899999999998875 457899999999999 888777766543
No 412
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=89.03 E-value=0.27 Score=53.03 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=21.3
Q ss_pred EeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 756 LEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 756 I~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
|.||||+||| |++..+.+.+... +.++.++
T Consensus 1 ViGpaGSGKT------T~~~~~~~~~~~~-~~~~~~v 30 (238)
T PF03029_consen 1 VIGPAGSGKT------TFCKGLSEWLESN-GRDVYIV 30 (238)
T ss_dssp -EESTTSSHH------HHHHHHHHHHTTT--S-EEEE
T ss_pred CCCCCCCCHH------HHHHHHHHHHHhc-cCCceEE
Confidence 6899999999 8888888888763 4444443
No 413
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.03 E-value=0.58 Score=55.25 Aligned_cols=60 Identities=5% Similarity=-0.158 Sum_probs=35.7
Q ss_pred HHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 742 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 742 V~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+..+|.+ .....+||.|+|||||| +...+.+.+-+++ .+.++|.++.-.. .+.|.+....
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT-----~la~qfl~~g~~~-~ge~~lyvs~eE~-~~~l~~~~~~ 71 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKT-----LFSIQFLYNGIIH-FDEPGVFVTFEES-PQDIIKNARS 71 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHH-----HHHHHHHHHHHHh-CCCCEEEEEEecC-HHHHHHHHHH
Confidence 4456654 22347899999999999 4444444333332 3667777776544 4555555443
No 414
>PF12846 AAA_10: AAA-like domain
Probab=88.98 E-value=0.38 Score=50.86 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=31.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCD 800 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD 800 (961)
.++|.|++|+||| +++..++.+++.. +.+|+|.=+...-.+
T Consensus 3 h~~i~G~tGsGKT-----~~~~~l~~~~~~~--g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 3 HTLILGKTGSGKT-----TLLKNLLEQLIRR--GPRVVIFDPKGDYSP 43 (304)
T ss_pred eEEEECCCCCcHH-----HHHHHHHHHHHHc--CCCEEEEcCCchHHH
Confidence 4699999999999 8888888887775 566666666544444
No 415
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=88.94 E-value=0.21 Score=58.60 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=17.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
-+|++|||||||| .++.++..
T Consensus 278 giLl~GpPGtGKT------~lAkava~ 298 (494)
T COG0464 278 GVLLYGPPGTGKT------LLAKAVAL 298 (494)
T ss_pred eeEEECCCCCCHH------HHHHHHHh
Confidence 4789999999999 66777665
No 416
>PHA02624 large T antigen; Provisional
Probab=88.94 E-value=0.44 Score=58.02 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcc-CCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 736 SDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 736 ~eQr~AV~~ILs~~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..=..|++.++.+. ...-++|+|||||||| |++.+|+..+
T Consensus 415 ~~~~~~lk~~l~giPKk~~il~~GPpnTGKT------tf~~sLl~~L 455 (647)
T PHA02624 415 DVIYDILKLIVENVPKRRYWLFKGPVNSGKT------TLAAALLDLC 455 (647)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHH------HHHHHHHHHc
Confidence 44566677777663 3336899999999999 5566655554
No 417
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.88 E-value=0.6 Score=48.82 Aligned_cols=58 Identities=5% Similarity=-0.035 Sum_probs=34.3
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL 806 (961)
.+..+|.+ .....++|.|+||+||| +....++.+.++. +.+++..+.-. .++.+.++.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT-----~l~~~~~~~~~~~--g~~~~~is~e~-~~~~i~~~~ 67 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKT-----IFCLHFAYKGLRD--GDPVIYVTTEE-SRESIIRQA 67 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChH-----HHHHHHHHHHHhc--CCeEEEEEccC-CHHHHHHHH
Confidence 34556633 22236899999999999 5554455555543 66666665433 335555553
No 418
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=88.83 E-value=0.7 Score=50.75 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHh----ccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecch-HHHHHHHHHHH
Q 002130 736 SDSNSAVHQILS----FEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN-RTCDKLMECLM 807 (961)
Q Consensus 736 ~eQr~AV~~ILs----~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSN-sAaD~LleRL~ 807 (961)
+.|++++..-.. +.....+||+|..||||| .+|.+++..+.. .+.|++=+.... .....|++.|.
T Consensus 33 e~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKS------SlVkall~~y~~-~GLRlIev~k~~L~~l~~l~~~l~ 102 (249)
T PF05673_consen 33 ERQKEALIENTEQFLQGLPANNVLLWGARGTGKS------SLVKALLNEYAD-QGLRLIEVSKEDLGDLPELLDLLR 102 (249)
T ss_pred HHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHH------HHHHHHHHHHhh-cCceEEEECHHHhccHHHHHHHHh
Confidence 456666654332 222346899999999999 455666655553 467766555443 22334444443
No 419
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.81 E-value=3.1 Score=52.46 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHhcc-CCCCceEeccCCCCCCccchHHHHHHHHHHHH--------Hh----------------------
Q 002130 735 DSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR--------RR---------------------- 783 (961)
Q Consensus 735 N~eQr~AV~~ILs~~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl--------k~---------------------- 783 (961)
=+-|+.-+.++|.+- +.--.++.-|.||||||+.+..|++=. .++- ..
T Consensus 23 Y~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~-q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~~ 101 (945)
T KOG1132|consen 23 YPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQ-QHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEAG 101 (945)
T ss_pred chHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHH-HHhhccccccchhhhhccccCCCCccCCCCchhhhc
Confidence 467999999988751 111248999999999976655554322 1111 00
Q ss_pred CC------CCeEEEEecchHHHHHHHHHHHh
Q 002130 784 SP------KSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 784 ~p------~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+ ..+|..++.||+-..+++..|.+
T Consensus 102 e~~~~~~~ipkIyyaSRTHsQltQvvrElrr 132 (945)
T KOG1132|consen 102 EPIACYTGIPKIYYASRTHSQLTQVVRELRR 132 (945)
T ss_pred CccccccCCceEEEecchHHHHHHHHHHHhh
Confidence 01 34899999999999999999987
No 420
>PRK09354 recA recombinase A; Provisional
Probab=88.79 E-value=0.74 Score=52.77 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=28.9
Q ss_pred HHHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 741 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 741 AV~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
++..+|. + ..-..+.|+||+||||| +....++.+..+. +.+++....
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKT-----tLal~~~~~~~~~--G~~~~yId~ 96 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKT-----TLALHAIAEAQKA--GGTAAFIDA 96 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHH-----HHHHHHHHHHHHc--CCcEEEECC
Confidence 4556676 4 22337899999999999 5555555555443 444444433
No 421
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.77 E-value=0.65 Score=58.61 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=31.1
Q ss_pred HHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC------CCCeEEEE
Q 002130 738 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS------PKSRILIC 792 (961)
Q Consensus 738 Qr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~------p~~RILVc 792 (961)
....+..+|..+...-.+|+||||+||| +|++++.+-+... .+.+|+..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT------~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKT------AIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHH------HHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3555555665543334589999999999 6667766654321 25666665
No 422
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.75 E-value=0.76 Score=47.70 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=23.5
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.+..+|.+ .....+.|.||||+||| ..+..++...+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT-----~l~~~ia~~~~~ 45 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKT-----QLCLQLAVEAQL 45 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChh-----HHHHHHHHHhhc
Confidence 35556643 22346899999999999 555555444433
No 423
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.64 E-value=0.28 Score=48.16 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=18.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++.++.+.+
T Consensus 6 ~i~l~G~~GsGKs------tla~~La~~l 28 (175)
T PRK00131 6 NIVLIGFMGAGKS------TIGRLLAKRL 28 (175)
T ss_pred eEEEEcCCCCCHH------HHHHHHHHHh
Confidence 4689999999999 7777766654
No 424
>CHL00176 ftsH cell division protein; Validated
Probab=88.56 E-value=0.39 Score=58.84 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 731 NYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
+....+++++.+..++.. ..+..+||+|||||||| +++.++..
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT------~LAralA~ 238 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKT------LLAKAIAG 238 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHH------HHHHHHHH
Confidence 334456666666666532 11235799999999999 56666654
No 425
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.56 E-value=0.47 Score=58.65 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 731 NYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
+..--+.|++.+..++.. .....+||+|||||||| +++.+|..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT------~laraia~ 234 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKT------LLAKAVAN 234 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChH------HHHHHHHH
Confidence 334456677777665531 11234799999999999 55555544
No 426
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=88.54 E-value=0.54 Score=51.93 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=34.1
Q ss_pred CCccEEEEecCCCCChHHHHHHHhcccc---CCCeEEEEeC-CCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLAN---ENTRVIVTGA-PHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~---~~trVVLaGD-pkQLpPvV~S~ 923 (961)
+.+.++|||+|-.+++ ++.=.|..+.. ..+.+||+.+ +.+|.|+|+|+
T Consensus 87 ~~~KV~II~~ae~m~~-~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SR 138 (261)
T PRK05818 87 NGKKIYIIYGIEKLNK-QSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSR 138 (261)
T ss_pred CCCEEEEeccHhhhCH-HHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhh
Confidence 4688999999966554 44444432322 4678888887 78999999986
No 427
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=88.46 E-value=0.38 Score=56.02 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=19.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..+||.|||||||| +++.++...+
T Consensus 109 ~~iLl~Gp~GtGKT------~lAr~lA~~l 132 (412)
T PRK05342 109 SNILLIGPTGSGKT------LLAQTLARIL 132 (412)
T ss_pred ceEEEEcCCCCCHH------HHHHHHHHHh
Confidence 45899999999999 6777776554
No 428
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=88.40 E-value=2.4 Score=47.53 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=33.5
Q ss_pred CCCccEEEEecCCCCChHHHHHHHhccc---cCCCeEEEEeCC-CCCCccccCh
Q 002130 874 AGHFSHIFLIDASSATEPETMIVLGNLA---NENTRVIVTGAP-HNSPSRVRSD 923 (961)
Q Consensus 874 ~g~FdhVIIDEASQAtEPEaLIPLa~LA---~~~trVVLaGDp-kQLpPvV~S~ 923 (961)
.+.+.++|||+|-.+++ ++.=.|.... ...+.+||+.+. .+|.|+|+|.
T Consensus 93 e~~~kv~ii~~ad~mt~-~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SR 145 (290)
T PRK05917 93 ESPYKIYIIHEADRMTL-DAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR 145 (290)
T ss_pred CCCceEEEEechhhcCH-HHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhc
Confidence 35788999999966654 4434443222 246788888887 8899998864
No 429
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=88.38 E-value=0.27 Score=49.44 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=15.7
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
++|.||||+||| |++..+.+
T Consensus 2 I~i~G~pGsGKs------t~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKG------TQAERLAK 21 (194)
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 589999999999 66655554
No 430
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=88.35 E-value=0.29 Score=48.87 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=17.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
.++|.||||+||| |+++.+.+.
T Consensus 5 ii~i~G~~GsGKs------Tl~~~l~~~ 26 (188)
T TIGR01360 5 IIFIVGGPGSGKG------TQCEKIVEK 26 (188)
T ss_pred EEEEECCCCCCHH------HHHHHHHHH
Confidence 5789999999999 666665543
No 431
>PRK12608 transcription termination factor Rho; Provisional
Probab=88.26 E-value=0.63 Score=53.85 Aligned_cols=50 Identities=8% Similarity=0.129 Sum_probs=30.4
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCC--eEEEEecchHHHHHHHHHHHh
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS--RILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~--RILVcAPSNsAaD~LleRL~~ 808 (961)
.+|+|||||||| +.+..++..+...+++. .++++.....-++.+.+.+..
T Consensus 136 ~LIvG~pGtGKT-----TLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~ 187 (380)
T PRK12608 136 GLIVAPPRAGKT-----VLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKG 187 (380)
T ss_pred EEEECCCCCCHH-----HHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhh
Confidence 499999999999 55555555554443333 344455555555566665543
No 432
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.19 E-value=0.56 Score=56.58 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
...+.++|.+.+..++... .+.+||.||.|+||| +|+..++..+
T Consensus 297 ~lg~~~~~~~~l~~~~~~~-~Glilv~G~tGSGKT-----Ttl~a~l~~~ 340 (564)
T TIGR02538 297 KLGFEPDQKALFLEAIHKP-QGMVLVTGPTGSGKT-----VSLYTALNIL 340 (564)
T ss_pred HcCCCHHHHHHHHHHHHhc-CCeEEEECCCCCCHH-----HHHHHHHHhh
Confidence 3467899999999888653 357899999999999 8887666554
No 433
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=88.02 E-value=0.44 Score=52.22 Aligned_cols=31 Identities=10% Similarity=0.070 Sum_probs=23.1
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
+|.||||+||| |-+.-..|++.+ .+.++.++
T Consensus 6 vVIGPPgSGKs------TYc~g~~~fls~-~gr~~~vV 36 (290)
T KOG1533|consen 6 VVIGPPGSGKS------TYCNGMSQFLSA-IGRPVAVV 36 (290)
T ss_pred EEEcCCCCCcc------chhhhHHHHHHH-hCCceEEE
Confidence 89999999999 666667788876 35555443
No 434
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=87.89 E-value=1.5 Score=55.53 Aligned_cols=117 Identities=7% Similarity=-0.119 Sum_probs=63.7
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHHHH
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQ 834 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~ 834 (961)
+..-..|.||| .+ .++..++....+..|-|+|++..-|..=.+.+...+.... ++++.- ....+..-
T Consensus 99 iaEM~TGEGKT-----Lv--A~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lG-l~v~~i---~~~~~~~e-- 165 (913)
T PRK13103 99 IAEMRTGEGKT-----LV--GTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLG-LSVGIV---TPFQPPEE-- 165 (913)
T ss_pred cccccCCCCCh-----HH--HHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccC-CEEEEE---CCCCCHHH--
Confidence 56668999999 33 2222333344689999999998777666665554221110 111110 01111111
Q ss_pred hhhhcccccCCChhhhhccceEEEEeeccchh--hhc-cC-----CCCCCccEEEEecCCCCChHHHHHHH
Q 002130 835 VSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHN-QG-----ITAGHFSHIFLIDASSATEPETMIVL 897 (961)
Q Consensus 835 y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~-~~-----~~~g~FdhVIIDEASQAtEPEaLIPL 897 (961)
......++|+.+|....|. |.. .. .....|.++||||+-.++--|+-.||
T Consensus 166 -------------rr~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPL 223 (913)
T PRK13103 166 -------------KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPL 223 (913)
T ss_pred -------------HHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCce
Confidence 2233457888888877643 221 11 11246888999999766544443333
No 435
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.81 E-value=0.53 Score=58.76 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=25.2
Q ss_pred HHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 738 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 738 Qr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..+-+..+|........||+|||||||| ++++.+.+.+
T Consensus 194 ei~~~i~iL~r~~~~n~LLvGppGvGKT------~lae~la~~i 231 (758)
T PRK11034 194 ELERAIQVLCRRRKNNPLLVGESGVGKT------AIAEGLAWRI 231 (758)
T ss_pred HHHHHHHHHhccCCCCeEEECCCCCCHH------HHHHHHHHHH
Confidence 3344445666543445689999999999 6667766543
No 436
>PRK08118 topology modulation protein; Reviewed
Probab=87.74 E-value=0.33 Score=49.32 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=17.6
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.||||+||| |++..+...+
T Consensus 4 I~I~G~~GsGKS------Tlak~L~~~l 25 (167)
T PRK08118 4 IILIGSGGSGKS------TLARQLGEKL 25 (167)
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 589999999999 6777766544
No 437
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.68 E-value=0.33 Score=54.03 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCC
Q 002130 732 YKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFV 765 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKT 765 (961)
..--.+|.+-++.++.. .-+.=+|++||||||||
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgkt 225 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKT 225 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchh
Confidence 34456666666555432 11223699999999999
No 438
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=87.65 E-value=0.32 Score=53.98 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=11.9
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
=+|++||||||||
T Consensus 207 GvLmYGPPGTGKT 219 (424)
T KOG0652|consen 207 GVLMYGPPGTGKT 219 (424)
T ss_pred ceEeeCCCCCcHH
Confidence 3699999999999
No 439
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.63 E-value=1 Score=49.95 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=68.8
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHh---hCCCCceEecccccccccCcc
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMK---DIPASEMFRANAAFREADGVS 829 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~---~l~~~~ilRV~a~sR~~~~V~ 829 (961)
+|.|.--|-||| -+.+-+.+|-++- ...-.|||.++|..-|-.|.+.+.. .++..++--++.. .....+
T Consensus 82 vlcqaksgmgkt-----avfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG--~~Ikkd 154 (387)
T KOG0329|consen 82 VLCQAKSGMGKT-----AVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG--LFIKKD 154 (387)
T ss_pred hheecccCCCce-----eeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcc--eecccc
Confidence 588999999999 4444444444443 2345899999999999999876654 5555444332221 001122
Q ss_pred HHHHHhhhhcccccCCChhhhhccceEEEEeeccchhh-hccCCCCCCccEEEEecCCCCChH
Q 002130 830 DEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HNQGITAGHFSHIFLIDASSATEP 891 (961)
Q Consensus 830 ~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L-~~~~~~~g~FdhVIIDEASQAtEP 891 (961)
++++.- + -.|||+|..-.--| .+..+.-.+..|-++||+..++|-
T Consensus 155 ee~lk~---------~--------PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~ 200 (387)
T KOG0329|consen 155 EELLKN---------C--------PHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQ 200 (387)
T ss_pred HHHHhC---------C--------CeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHH
Confidence 333221 1 25777776433222 234455568899999999877664
No 440
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=87.58 E-value=0.29 Score=54.33 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=11.9
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
-+|.+||||||||
T Consensus 153 nVLFyGppGTGKT 165 (368)
T COG1223 153 NVLFYGPPGTGKT 165 (368)
T ss_pred eeEEECCCCccHH
Confidence 4789999999999
No 441
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=87.56 E-value=0.53 Score=57.26 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHHhC
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS 784 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~ 784 (961)
...+++.||||+||| +|++.|+..++..
T Consensus 103 ~~IL~LvGPpG~GKS------sLa~~la~~le~~ 130 (644)
T PRK15455 103 KQILYLLGPVGGGKS------SLAERLKSLMERV 130 (644)
T ss_pred CceEEEecCCCCCch------HHHHHHHHHHHhC
Confidence 347789999999999 7888888887764
No 442
>PRK14531 adenylate kinase; Provisional
Probab=87.55 E-value=0.36 Score=49.30 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=16.9
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.||||+||| |++..+.+-+
T Consensus 5 i~i~G~pGsGKs------T~~~~la~~~ 26 (183)
T PRK14531 5 LLFLGPPGAGKG------TQAARLCAAH 26 (183)
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 689999999999 6666665433
No 443
>PRK14532 adenylate kinase; Provisional
Probab=87.54 E-value=0.33 Score=49.21 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.0
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
++|.||||+||| |++..+.+
T Consensus 3 i~~~G~pGsGKs------T~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKG------TQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 589999999999 66666554
No 444
>PRK03839 putative kinase; Provisional
Probab=87.49 E-value=0.35 Score=48.83 Aligned_cols=22 Identities=9% Similarity=-0.008 Sum_probs=17.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.|+||+||| |++..+.+.+
T Consensus 3 I~l~G~pGsGKs------T~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKT------TVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 589999999999 6666665544
No 445
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=87.48 E-value=0.3 Score=48.58 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=22.2
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
++..+|.||-||||| ||+++|..++-.
T Consensus 19 ~g~~vi~G~Ng~GKS------til~ai~~~L~~ 45 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKS------TILEAIRYALGG 45 (202)
T ss_dssp SEEEEEEESTTSSHH------HHHHHHHHHHHS
T ss_pred CCcEEEECCCCCCHH------HHHHHHHHHHcC
Confidence 357899999999999 777888877743
No 446
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=87.46 E-value=0.78 Score=48.70 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=33.4
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHH----------hCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRR----------RSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk----------~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+|.||||+||| +....+++.+.. ...+.+||+.+--+.+ +.+.+|+..
T Consensus 4 ~ll~g~~G~GKS-----~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~-~~i~~Rl~~ 62 (239)
T cd01125 4 SALVAPGGTGKS-----SLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR-EEIHRRLEA 62 (239)
T ss_pred eEEEcCCCCCHH-----HHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH-HHHHHHHHH
Confidence 589999999999 555555554432 1245688888866644 467777765
No 447
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=87.35 E-value=0.79 Score=47.85 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=21.7
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.+..+|.+ .....+.|.||||+||| ..+..++..
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT-----~l~~~l~~~ 42 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKT-----QLCHQLAVT 42 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHH-----HHHHHHHHH
Confidence 34456653 22346799999999999 554444443
No 448
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=87.34 E-value=2.8 Score=49.85 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 736 SDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 736 ~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
....+.|.+.+.. ....++||.|..||||- +++.+|.+.-.
T Consensus 147 S~am~~l~~~i~kvA~s~a~VLI~GESGtGKE------lvAr~IH~~S~ 189 (464)
T COG2204 147 SPAMQQLRRLIAKVAPSDASVLITGESGTGKE------LVARAIHQASP 189 (464)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHH------HHHHHHHhhCc
Confidence 3344444444432 34578999999999999 67777766443
No 449
>PRK06851 hypothetical protein; Provisional
Probab=87.31 E-value=0.54 Score=54.13 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=30.0
Q ss_pred HHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE--EecchHHHHHH
Q 002130 742 VHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI--CAPWNRTCDKL 802 (961)
Q Consensus 742 V~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV--cAPSNsAaD~L 802 (961)
+..++..- ...++|-|+|||||| +.+..++..+.++ +.+|.+ |+.-+...|.+
T Consensus 206 ~~~l~~~~-~~~~~i~G~pG~GKs-----tl~~~i~~~a~~~--G~~v~~~hC~~dPdslD~v 260 (367)
T PRK06851 206 VPSLTEGV-KNRYFLKGRPGTGKS-----TMLKKIAKAAEER--GFDVEVYHCGFDPDSLDMV 260 (367)
T ss_pred HHhHhccc-ceEEEEeCCCCCcHH-----HHHHHHHHHHHhC--CCeEEEEeCCCCCCCcceE
Confidence 44455332 235899999999999 5554444444443 555554 33333334433
No 450
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=87.30 E-value=0.43 Score=56.92 Aligned_cols=60 Identities=15% Similarity=0.066 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKL 802 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~L 802 (961)
+..-++|+..++.. ...++|.|||||||| +++.++..++....+...|-++..++.+..+
T Consensus 197 q~~~~~al~~aa~~--g~~vlliG~pGsGKT------tlar~l~~llp~~~~~~~le~~~i~s~~g~~ 256 (499)
T TIGR00368 197 QQHAKRALEIAAAG--GHNLLLFGPPGSGKT------MLASRLQGILPPLTNEEAIETARIWSLVGKL 256 (499)
T ss_pred cHHHHhhhhhhccC--CCEEEEEecCCCCHH------HHHHHHhcccCCCCCcEEEeccccccchhhh
Confidence 34445555544432 236899999999999 7778887776654555566666665554443
No 451
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.29 E-value=0.36 Score=57.84 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=16.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVL 778 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIl 778 (961)
=+|+.|||||||| .|+.||+
T Consensus 339 GVLLvGPPGTGKT------lLARAvA 358 (752)
T KOG0734|consen 339 GVLLVGPPGTGKT------LLARAVA 358 (752)
T ss_pred ceEEeCCCCCchh------HHHHHhh
Confidence 4799999999999 5666654
No 452
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function.
Probab=87.22 E-value=0.94 Score=58.90 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=30.6
Q ss_pred CccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCC
Q 002130 876 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNS 916 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQL 916 (961)
.+.+|+|||. |-+.|..+--|..|+.....|+++||..|-
T Consensus 196 ~~~~I~VDeF-qdf~~~Q~~lI~~L~~~~~~v~Vv~d~Dq~ 235 (1158)
T TIGR02773 196 KGAEIYIDGF-HSFTPQEYSVIGALMKKAKKVTVTLTLDGP 235 (1158)
T ss_pred CCCEEEEccC-CCCCHHHHHHHHHHHHhCCcEEEEEEeCCc
Confidence 3689999999 555565555566577777899999999887
No 453
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.15 E-value=0.62 Score=56.98 Aligned_cols=38 Identities=8% Similarity=0.126 Sum_probs=24.1
Q ss_pred HHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 739 NSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 739 r~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
...+++++.... ..-+|++||+|+||| |++.++.+.+.
T Consensus 25 ~~~L~~~i~~~ri~ha~Lf~Gp~GvGKt------tlA~~lAk~L~ 63 (620)
T PRK14954 25 THTIQNSLRMDRVGHGYIFSGLRGVGKT------TAARVFAKAVN 63 (620)
T ss_pred HHHHHHHHHcCCCCeeEEEECCCCCCHH------HHHHHHHHHhC
Confidence 333444444322 234889999999999 66666665554
No 454
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=87.13 E-value=0.51 Score=54.38 Aligned_cols=65 Identities=11% Similarity=0.074 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
..-|++||.-++.+. -++++..-||||| .+-.-.|+|.+.. .....+|+.|||+.-|-.+.+...
T Consensus 50 SaIQqraI~p~i~G~---dv~~qaqsgTgKt-----~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~ 115 (397)
T KOG0327|consen 50 SAIQQRAILPCIKGH---DVIAQAQSGTGKT-----AAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVR 115 (397)
T ss_pred hHHHhccccccccCC---ceeEeeeccccch-----hhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHH
Confidence 567999999888775 3689999999999 5555556665432 234578999999987777775544
No 455
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=87.08 E-value=0.64 Score=53.22 Aligned_cols=42 Identities=7% Similarity=-0.042 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 736 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 736 ~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
++.+.|+...+-....+=+||.|++||||| |++.++.+++..
T Consensus 23 ~~~k~al~~~~~~p~~~~vli~G~~GtGKs------~~ar~~~~~l~~ 64 (350)
T CHL00081 23 EEMKLALILNVIDPKIGGVMIMGDRGTGKS------TTIRALVDLLPE 64 (350)
T ss_pred HHHHHHHHHhccCCCCCeEEEEcCCCCCHH------HHHHHHHHHHhh
Confidence 344555554443333345799999999999 788888887764
No 456
>PRK02496 adk adenylate kinase; Provisional
Probab=86.94 E-value=0.4 Score=48.53 Aligned_cols=22 Identities=9% Similarity=-0.006 Sum_probs=17.0
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.||||+||| |++..+...+
T Consensus 4 i~i~G~pGsGKs------t~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKG------TQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 689999999999 6666665443
No 457
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=86.84 E-value=0.65 Score=52.81 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=22.1
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.+-++|.|++||||| |++.++..++.
T Consensus 25 ~g~vli~G~~G~gKt------tl~r~~~~~~~ 50 (337)
T TIGR02030 25 IGGVMVMGDRGTGKS------TAVRALAALLP 50 (337)
T ss_pred CCeEEEEcCCCCCHH------HHHHHHHHhhc
Confidence 346899999999999 88888888774
No 458
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.80 E-value=0.69 Score=58.51 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=20.5
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.++++.||+||||| +++.+|.+.+..
T Consensus 599 ~~~Lf~Gp~G~GKT------~lA~aLa~~l~~ 624 (857)
T PRK10865 599 GSFLFLGPTGVGKT------ELCKALANFMFD 624 (857)
T ss_pred ceEEEECCCCCCHH------HHHHHHHHHhhc
Confidence 36899999999999 667777766643
No 459
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=86.54 E-value=1.1 Score=51.47 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=37.6
Q ss_pred HHHHHHhcc--CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 741 AVHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 741 AV~~ILs~~--~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
.+.++|.+- .-..++|.|+||+||| +.+.+++..+.+. +.+||..+-... .+.+..|..
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKS-----tLllq~a~~~a~~--g~~VlYvs~EEs-~~qi~~Ra~ 130 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKS-----TLLLQVAARLAKR--GGKVLYVSGEES-PEQIKLRAD 130 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEECCcC-HHHHHHHHH
Confidence 345667541 1236899999999999 6666665555443 578888776544 345555543
No 460
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=86.50 E-value=2.2 Score=54.42 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-----CCCCeEEEEecchHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-----SPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-----~p~~RILVcAPSNsAaD~LleRL 806 (961)
.+..+-|.+|+=.|+.+++ +|-+|-.|.|||++++ .=+|.++..+ ..+.--||.|||..-|-+|-+.+
T Consensus 386 ~k~~~IQ~qAiP~ImsGrd---vIgvakTgSGKT~af~----LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~ 458 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMSGRD---VIGVAKTGSGKTLAFL----LPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREV 458 (997)
T ss_pred CCCcchhhhhcchhccCcc---eEEeeccCCccchhhh----cchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHH
Confidence 3567889999999998873 6889999999994321 2234544432 23455688999988888877666
Q ss_pred Hh
Q 002130 807 MK 808 (961)
Q Consensus 807 ~~ 808 (961)
..
T Consensus 459 ~k 460 (997)
T KOG0334|consen 459 RK 460 (997)
T ss_pred HH
Confidence 55
No 461
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=86.42 E-value=0.39 Score=47.18 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=16.3
Q ss_pred EeccCCCCCCccchHHHHHHHHHHHH
Q 002130 756 LEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 756 I~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
|.||||+||| |+++.|.+-+
T Consensus 1 i~G~PgsGK~------t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKG------TQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHH------HHHHHHHHHH
T ss_pred CcCCCCCChH------HHHHHHHHhc
Confidence 7899999999 7777776644
No 462
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=86.38 E-value=1 Score=44.97 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=24.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.++|.|++|+||| |+++.+.+.+.. .+.++.++
T Consensus 2 ~I~ieG~~GsGKt------T~~~~L~~~l~~-~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKT------TLIELLAERLEA-RGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHHH-cCCeEEEE
Confidence 3579999999999 788888777764 45565444
No 463
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=86.35 E-value=1.1 Score=45.42 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=24.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.++|.|++|+||| |+++.+.+.+.. .+.+|+++
T Consensus 5 ~IvieG~~GsGKs------T~~~~L~~~l~~-~g~~v~~~ 37 (195)
T TIGR00041 5 FIVIEGIDGAGKT------TQANLLKKLLQE-NGYDVLFT 37 (195)
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHHH-cCCeEEEE
Confidence 4689999999999 777777777664 35556544
No 464
>PRK14530 adenylate kinase; Provisional
Probab=86.34 E-value=0.43 Score=49.85 Aligned_cols=22 Identities=14% Similarity=-0.070 Sum_probs=17.2
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.||||+||| |++..+.+.+
T Consensus 6 I~i~G~pGsGKs------T~~~~La~~~ 27 (215)
T PRK14530 6 ILLLGAPGAGKG------TQSSNLAEEF 27 (215)
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 689999999999 6666665544
No 465
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=86.32 E-value=0.84 Score=39.83 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=17.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+.|.|++|+||| |++.++.+.+
T Consensus 2 i~i~G~~gsGKs------t~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKS------TVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 468999999999 6666666655
No 466
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.30 E-value=0.34 Score=55.67 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.2
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
+|++|||||||| .++.+++.
T Consensus 130 iLL~GPpG~GKT------mlAKA~Ak 149 (386)
T KOG0737|consen 130 ILLYGPPGTGKT------MLAKAIAK 149 (386)
T ss_pred ceecCCCCchHH------HHHHHHHH
Confidence 699999999999 56666553
No 467
>PRK11823 DNA repair protein RadA; Provisional
Probab=86.27 E-value=1.2 Score=52.36 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=37.7
Q ss_pred HHHHHHhcc--CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 002130 741 AVHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 741 AV~~ILs~~--~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL 806 (961)
.+..+|.+- ....++|.|+||+||| +.+.+++..+.+. +.++|.++.... .+.+..|.
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKT-----tL~lq~a~~~a~~--g~~vlYvs~Ees-~~qi~~ra 127 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKS-----TLLLQVAARLAAA--GGKVLYVSGEES-ASQIKLRA 127 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEEcccc-HHHHHHHH
Confidence 355667541 2236899999999999 6666665555543 678888876554 34555553
No 468
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.24 E-value=0.54 Score=58.66 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=19.5
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
+.++++|||||||| +++.+|...+.
T Consensus 348 ~~lll~GppG~GKT------~lAk~iA~~l~ 372 (775)
T TIGR00763 348 PILCLVGPPGVGKT------SLGKSIAKALN 372 (775)
T ss_pred ceEEEECCCCCCHH------HHHHHHHHHhc
Confidence 35899999999999 66677666553
No 469
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.22 E-value=2.6 Score=49.68 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=31.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeE-EEEecch--HHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI-LICAPWN--RTCDKLMECLMK 808 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RI-LVcAPSN--sAaD~LleRL~~ 808 (961)
.+++.|==|+||| +|.+.+...+-+ .+.++ ||||.+. +|.|+| +-|.+
T Consensus 102 vImmvGLQGsGKT-----Tt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL-~~La~ 152 (451)
T COG0541 102 VILMVGLQGSGKT-----TTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQL-KQLAE 152 (451)
T ss_pred EEEEEeccCCChH-----hHHHHHHHHHHH--cCCceEEEecccCChHHHHHH-HHHHH
Confidence 3567899999999 888888887666 35555 5555554 334443 34443
No 470
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.21 E-value=0.96 Score=53.97 Aligned_cols=136 Identities=11% Similarity=-0.052 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHH-HHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI-RRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL-lk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
+-.+.|.+||-.+|.+++ ++=..=-|+|||-.+++..++++.-|- ++...+.--|||+||..-|-+|.....++..
T Consensus 245 kptpiq~qalptalsgrd---vigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K 321 (731)
T KOG0339|consen 245 KPTPIQCQALPTALSGRD---VIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGK 321 (731)
T ss_pred cCCccccccccccccccc---chheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhh
Confidence 346678888888887653 233346789999444444444443331 1112344568899999988877655543211
Q ss_pred --CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccch-hhhccCCCCCCccEEEEecCCCC
Q 002130 812 --ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSF-RLHNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 812 --~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag-~L~~~~~~~g~FdhVIIDEASQA 888 (961)
+.+.+-++.. .+.+ + ..++.-..+.|||||..-.- ++......-...++++||||..+
T Consensus 322 ~ygl~~v~~ygG------gsk~-------e------Q~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrm 382 (731)
T KOG0339|consen 322 AYGLRVVAVYGG------GSKW-------E------QSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRM 382 (731)
T ss_pred hccceEEEeecC------CcHH-------H------HHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhh
Confidence 2223323221 0100 0 00111156789999874221 11122233346889999999876
Q ss_pred Ch
Q 002130 889 TE 890 (961)
Q Consensus 889 tE 890 (961)
..
T Consensus 383 fd 384 (731)
T KOG0339|consen 383 FD 384 (731)
T ss_pred hc
Confidence 53
No 471
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=85.97 E-value=0.63 Score=54.33 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
-++|.|+|||||| .+|+.++...+.
T Consensus 181 r~vL~Ge~GtGKS-----iaL~qa~h~a~~ 205 (461)
T KOG3928|consen 181 RFVLDGEPGTGKS-----IALAQAVHYAAD 205 (461)
T ss_pred EEEEeCCCCCchh-----hHHHHHHHHHhc
Confidence 4799999999999 999999876554
No 472
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.84 E-value=0.79 Score=56.24 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHhccC-----CCCceEeccCCCCCC
Q 002130 732 YKLDSDSNSAVHQILSFEG-----QSPYLLEGPLCNNFV 765 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~-----~~P~LI~GPPGTGKT 765 (961)
...++.+...|..++.... ...++|.||||+|||
T Consensus 86 l~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKT 124 (637)
T TIGR00602 86 LAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKS 124 (637)
T ss_pred hcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHH
Confidence 3457888888888776421 124899999999999
No 473
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=85.80 E-value=0.43 Score=47.17 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=15.9
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
++|.||+|+||| |++..+.+.
T Consensus 1 i~l~G~~GsGKS------Tla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKS------TIASALAHR 21 (163)
T ss_pred CEEECCCCCCHH------HHHHHHHHh
Confidence 368999999999 666665543
No 474
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=85.79 E-value=0.84 Score=50.87 Aligned_cols=44 Identities=11% Similarity=-0.055 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHhc-----c---CCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSF-----E---GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~-----~---~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..|+++|++++..+|.. + ....++|.|++|+||| |++..+.+.+
T Consensus 106 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKS------tvg~~La~~L 157 (309)
T PRK08154 106 EQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKS------TLGRMLAARL 157 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHH------HHHHHHHHHc
Confidence 47899999999988864 1 2346789999999999 6666655433
No 475
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=85.70 E-value=0.55 Score=45.44 Aligned_cols=22 Identities=14% Similarity=0.076 Sum_probs=17.5
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.|+||+||| |++..+.+.+
T Consensus 2 i~l~G~~GsGKs------tla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKT------TVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHH------HHHHHHHHHh
Confidence 589999999999 6777766544
No 476
>PRK14528 adenylate kinase; Provisional
Probab=85.59 E-value=0.52 Score=48.55 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=16.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
++|.||||+||| |++..+.+.
T Consensus 4 i~i~G~pGsGKt------t~a~~la~~ 24 (186)
T PRK14528 4 IIFMGPPGAGKG------TQAKILCER 24 (186)
T ss_pred EEEECCCCCCHH------HHHHHHHHH
Confidence 589999999999 666665443
No 477
>PRK05541 adenylylsulfate kinase; Provisional
Probab=85.57 E-value=0.81 Score=46.02 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=19.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.++|.|++|+||| |++..+...+..
T Consensus 9 ~I~i~G~~GsGKs------t~a~~l~~~l~~ 33 (176)
T PRK05541 9 VIWITGLAGSGKT------TIAKALYERLKL 33 (176)
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHHHH
Confidence 5688999999999 677777666654
No 478
>PRK00279 adk adenylate kinase; Reviewed
Probab=85.50 E-value=0.51 Score=49.28 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=16.4
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
++|.||||+||| |+++.+.+.
T Consensus 3 I~v~G~pGsGKs------T~a~~la~~ 23 (215)
T PRK00279 3 LILLGPPGAGKG------TQAKFIAEK 23 (215)
T ss_pred EEEECCCCCCHH------HHHHHHHHH
Confidence 589999999999 666665543
No 479
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=85.49 E-value=1.4 Score=52.30 Aligned_cols=61 Identities=8% Similarity=0.026 Sum_probs=37.6
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+..+|.+ .....+||.|+|||||| +...+.+...+++ .+.++|..+-.... +.+++++..
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT-----~l~~qf~~~~~~~-~ge~~lyis~ee~~-~~i~~~~~~ 81 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKT-----LFALQFLVNGIKR-FDEPGVFVTFEESP-EDIIRNVAS 81 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHH-----HHHHHHHHHHHHh-cCCCEEEEEccCCH-HHHHHHHHH
Confidence 45556753 22336899999999999 5544454444443 36788887766644 455555443
No 480
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=85.40 E-value=1.4 Score=48.90 Aligned_cols=52 Identities=15% Similarity=0.348 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhccCCCCc-eEeccCCCCCCccchHHHHHHHHHHHHHhCCCCe--EEEEecc
Q 002130 737 DSNSAVHQILSFEGQSPY-LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSR--ILICAPW 795 (961)
Q Consensus 737 eQr~AV~~ILs~~~~~P~-LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~R--ILVcAPS 795 (961)
.-++.+..+....+..+. =|.||||.||+ +.+-+++..+.+. +.| ||.+-||
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKS-----Tli~~l~~~~~~~--g~~VaVlAVDPS 68 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKS-----TLIDALIRELRER--GKRVAVLAVDPS 68 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHH-----HHHHHHHHHHHHT--T--EEEEEE-GG
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHH-----HHHHHHHHHHhhc--CCceEEEEECCC
Confidence 344555555544333333 38999999999 5555556655554 555 5555565
No 481
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.35 E-value=0.87 Score=54.27 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=27.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE-ecc
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APW 795 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc-APS 795 (961)
.+++.||.|.||| +|++.+...+.......+|.++ +-+
T Consensus 258 Vi~LvGpnGvGKT-----TTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 258 VFALMGPTGVGKT-----TTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred EEEEECCCCccHH-----HHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 5789999999999 8888887766544334466544 344
No 482
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=85.33 E-value=1.2 Score=50.01 Aligned_cols=50 Identities=6% Similarity=-0.087 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
|+...+..+..+...+-..+-|.|+||.||| ||++.++..+.. ..++.|.
T Consensus 88 n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKT------TLl~~l~~~l~~--~~~~~VI 137 (290)
T PRK10463 88 NNRLAERNRARFAARKQLVLNLVSSPGSGKT------TLLTETLMRLKD--SVPCAVI 137 (290)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECCCCCCHH------HHHHHHHHHhcc--CCCEEEE
Confidence 5556666666665554445679999999999 555555544443 2355544
No 483
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.30 E-value=0.93 Score=55.42 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHh----c---------cCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 725 SLCPYSNYKLDSDSNSAVHQILS----F---------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 725 ~~~~~~n~~LN~eQr~AV~~ILs----~---------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
+...|.+..-.++++..++..+. . ..+.=+|++||||+||| +++.++.-
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT------~lAkalAn 490 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKT------LLAKALAN 490 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchH------HHHHHHhh
Confidence 34678777777787777664432 1 11234799999999999 66666654
No 484
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.28 E-value=3.2 Score=51.29 Aligned_cols=52 Identities=6% Similarity=0.130 Sum_probs=35.6
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEe-cchHHHHHHHHHHHhhCC
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICA-PWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcA-PSNsAaD~LleRL~~~l~ 811 (961)
..++|.|-.|+||| +-|+.-+ ++. ..+..++.|| |-..||=-+++|+...+.
T Consensus 372 ~vvvivgETGSGKT-----TQl~QyL---~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKT-----TQLAQYL---YEDGYADNGMIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred cEEEEEecCCCCch-----hhhHHHH---HhcccccCCeeeecCchHHHHHHHHHHHHHHhC
Confidence 36899999999999 5555433 222 2234566665 567788889999988553
No 485
>PRK07261 topology modulation protein; Provisional
Probab=85.22 E-value=0.53 Score=47.90 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=17.1
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.|++|+||| |+++.+.+.+
T Consensus 3 i~i~G~~GsGKS------Tla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKS------TLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHH------HHHHHHHHHh
Confidence 589999999999 6766665443
No 486
>PRK06696 uridine kinase; Validated
Probab=85.21 E-value=1.3 Score=46.81 Aligned_cols=34 Identities=3% Similarity=0.072 Sum_probs=24.6
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 791 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV 791 (961)
+..+.|-|++|+||| |+++.+.+.+... +..|++
T Consensus 22 ~~iI~I~G~sgsGKS------TlA~~L~~~l~~~-g~~v~~ 55 (223)
T PRK06696 22 PLRVAIDGITASGKT------TFADELAEEIKKR-GRPVIR 55 (223)
T ss_pred ceEEEEECCCCCCHH------HHHHHHHHHHHHc-CCeEEE
Confidence 345678999999999 7888888777642 445544
No 487
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=85.17 E-value=1.2 Score=49.94 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=21.0
Q ss_pred CCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 750 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 750 ~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
...|++|.|.+||||+ ++|.+|...-
T Consensus 28 ~~~pVlI~GE~GtGK~------~lA~~iH~~s 53 (326)
T PRK11608 28 LDKPVLIIGERGTGKE------LIASRLHYLS 53 (326)
T ss_pred CCCCEEEECCCCCcHH------HHHHHHHHhC
Confidence 3568999999999999 7777776543
No 488
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=85.16 E-value=1 Score=45.10 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchH
Q 002130 735 DSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNR 797 (961)
Q Consensus 735 N~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNs 797 (961)
+.++..++...|.. .....++|.|+.|+||| |++..+.+.+.. .--|..||=.
T Consensus 4 s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKT------tl~~~l~~~lg~----~~~v~SPTf~ 58 (133)
T TIGR00150 4 DEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKT------TLVQGLLQGLGI----QGNVTSPTFT 58 (133)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHH------HHHHHHHHHcCC----CCcccCCCee
Confidence 56666676666654 22346789999999999 666666655432 1236666643
No 489
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=85.16 E-value=0.51 Score=49.12 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=15.7
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
++|.||||+||| |++..+.+
T Consensus 2 I~i~G~pGsGKs------T~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKG------TQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 589999999999 66666544
No 490
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=85.15 E-value=0.4 Score=47.60 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=13.9
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
++|.|+|||||| ||++.+..
T Consensus 2 I~i~G~~stGKT------TL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKT------TLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHH------HHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 479999999999 66666554
No 491
>PLN02200 adenylate kinase family protein
Probab=85.15 E-value=0.53 Score=50.58 Aligned_cols=23 Identities=9% Similarity=-0.081 Sum_probs=17.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.||||+||| |+++.+.+.+
T Consensus 45 ii~I~G~PGSGKs------T~a~~La~~~ 67 (234)
T PLN02200 45 ITFVLGGPGSGKG------TQCEKIVETF 67 (234)
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4688999999999 6766665533
No 492
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=85.09 E-value=1.1 Score=50.57 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=21.3
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
..|++|.|.+||||+ ++|.+|.+.-.
T Consensus 22 ~~pVLI~GE~GtGK~------~lAr~iH~~s~ 47 (329)
T TIGR02974 22 DRPVLIIGERGTGKE------LIAARLHYLSK 47 (329)
T ss_pred CCCEEEECCCCChHH------HHHHHHHHhcC
Confidence 568999999999999 67888776544
No 493
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=85.02 E-value=0.47 Score=47.54 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=28.0
Q ss_pred cEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCCc-c--c--cCh--HHHhcCCChhHHHHHH
Q 002130 878 SHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSPS-R--V--RSD--IARKNGLKMSYFERLC 939 (961)
Q Consensus 878 dhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLpP-v--V--~S~--~A~k~GL~~SLFERL~ 939 (961)
.++++||.-.+. |.+--+|..+ =...+|-+-|....|+. + | .+. .+..+.|-..++.|+|
T Consensus 64 ~ill~DEiNrap-pktQsAlLea-m~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 64 NILLADEINRAP-PKTQSALLEA-MEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SEEEEETGGGS--HHHHHHHHHH-HHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ceeeecccccCC-HHHHHHHHHH-HHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 478999986654 4433333211 13567777788888876 1 2 222 2223456666666653
No 494
>PRK08233 hypothetical protein; Provisional
Probab=85.00 E-value=0.47 Score=47.19 Aligned_cols=23 Identities=4% Similarity=-0.109 Sum_probs=17.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.|.|+||+||| |+++.+.+.+
T Consensus 5 iI~I~G~~GsGKt------Tla~~L~~~l 27 (182)
T PRK08233 5 IITIAAVSGGGKT------TLTERLTHKL 27 (182)
T ss_pred EEEEECCCCCCHH------HHHHHHHhhC
Confidence 4578899999999 6777666543
No 495
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=84.95 E-value=0.84 Score=57.09 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=18.1
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+.+|+.||||+||| .++.++.+.+
T Consensus 489 ~~~Lf~GP~GvGKT------~lAk~LA~~l 512 (758)
T PRK11034 489 GSFLFAGPTGVGKT------EVTVQLSKAL 512 (758)
T ss_pred ceEEEECCCCCCHH------HHHHHHHHHh
Confidence 35799999999999 5556655544
No 496
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=84.91 E-value=1.3 Score=52.24 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=38.5
Q ss_pred HHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 740 SAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 740 ~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
.-+..+|.+ ..-..++|.|+||+||| +.+..++.++.+. +.+||..+.-... +.+..|..
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKT-----TL~lq~a~~~a~~--g~kvlYvs~EEs~-~qi~~ra~ 142 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKS-----TLLLQVACQLAKN--QMKVLYVSGEESL-QQIKMRAI 142 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHH-----HHHHHHHHHHHhc--CCcEEEEECcCCH-HHHHHHHH
Confidence 345667754 22236899999999999 6666666655543 5688887765543 44555543
No 497
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=84.90 E-value=1.3 Score=56.87 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=11.5
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
+|.+||||||||
T Consensus 302 vL~~GppGTGkT 313 (1080)
T KOG0732|consen 302 VLFHGPPGTGKT 313 (1080)
T ss_pred eeecCCCCCchh
Confidence 799999999999
No 498
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=84.89 E-value=2.6 Score=49.74 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh------CCCCeEEEEecchHHHHHH---HHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR------SPKSRILICAPWNRTCDKL---MEC 805 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~------~p~~RILVcAPSNsAaD~L---leR 805 (961)
+--|..||--+|.+.+ ++...-.|+|||. .-++-+|.-++.. ..+..-+|.+||..-|..+ +++
T Consensus 43 TlIQs~aIplaLEgKD---vvarArTGSGKT~----AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viek 115 (569)
T KOG0346|consen 43 TLIQSSAIPLALEGKD---VVARARTGSGKTA----AYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEK 115 (569)
T ss_pred chhhhcccchhhcCcc---eeeeeccCCCchH----HHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHH
Confidence 4457888888887753 5788899999991 2222333333332 1234567888998766554 444
Q ss_pred HHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCC--CCCCccEEEEe
Q 002130 806 LMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGI--TAGHFSHIFLI 883 (961)
Q Consensus 806 L~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~--~~g~FdhVIID 883 (961)
|...+. +.+|+..-. ..+.+.+.+ ...++.-.|||+|..-.-.....+. .-.+..+++||
T Consensus 116 L~~~c~--k~lr~~nl~---s~~sdsv~~-------------~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 116 LVEYCS--KDLRAINLA---SSMSDSVNS-------------VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred HHHHHH--Hhhhhhhhh---cccchHHHH-------------HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 444321 122221100 011122111 1223566899999876644444333 23468889999
Q ss_pred cCC
Q 002130 884 DAS 886 (961)
Q Consensus 884 EAS 886 (961)
||-
T Consensus 178 EAD 180 (569)
T KOG0346|consen 178 EAD 180 (569)
T ss_pred hhh
Confidence 994
No 499
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.81 E-value=1.6 Score=51.50 Aligned_cols=50 Identities=4% Similarity=-0.015 Sum_probs=32.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe-cc-hHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA-PW-NRTCDKLMECLMK 808 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA-PS-NsAaD~LleRL~~ 808 (961)
.++|.||+|+||| +|++.++.+.... .+.+|++.+ -+ ..|+...+.++.+
T Consensus 225 vi~lvGptGvGKT-----TtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~yAe 276 (432)
T PRK12724 225 VVFFVGPTGSGKT-----TSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRYAD 276 (432)
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHHHH
Confidence 4678999999999 8888777655332 366775544 44 2445555555554
No 500
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=84.68 E-value=0.56 Score=45.66 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=0.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.|+||+||| |++..+.+
T Consensus 1 li~l~G~~GsGKS------T~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKS------TVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHH------HHHHHHHh
Done!