Query 002130
Match_columns 961
No_of_seqs 305 out of 1860
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 9.6E-50 3.3E-54 464.5 30.5 362 557-947 3-443 (646)
2 2gk6_A Regulator of nonsense t 100.0 2.1E-42 7.3E-47 402.2 39.2 357 556-947 7-415 (624)
3 2wjy_A Regulator of nonsense t 100.0 2E-41 6.7E-46 405.4 39.2 377 536-947 163-591 (800)
4 2xzl_A ATP-dependent helicase 100.0 3.7E-41 1.3E-45 403.1 38.7 376 537-947 166-593 (802)
5 1w36_D RECD, exodeoxyribonucle 99.7 1.7E-16 6E-21 184.9 15.5 173 735-940 151-331 (608)
6 3e1s_A Exodeoxyribonuclease V, 99.7 4.5E-16 1.5E-20 180.7 16.6 139 731-923 187-325 (574)
7 3upu_A ATP-dependent DNA helic 99.6 8.7E-16 3E-20 172.4 13.3 149 732-923 24-174 (459)
8 3lfu_A DNA helicase II; SF1 he 99.5 2.1E-14 7.3E-19 165.3 12.0 69 732-810 8-78 (647)
9 1uaa_A REP helicase, protein ( 99.3 1E-12 3.5E-17 153.6 7.5 69 733-811 2-72 (673)
10 1pjr_A PCRA; DNA repair, DNA r 99.3 4.7E-12 1.6E-16 150.1 8.1 69 732-810 10-80 (724)
11 3vkw_A Replicase large subunit 99.1 3.7E-11 1.3E-15 136.3 7.9 117 753-923 163-279 (446)
12 2gxq_A Heat resistant RNA depe 99.0 1.2E-09 4E-14 107.4 10.5 154 732-912 22-183 (207)
13 3b6e_A Interferon-induced heli 99.0 6.3E-10 2.2E-14 109.2 8.5 133 732-891 32-177 (216)
14 1qde_A EIF4A, translation init 99.0 1.5E-09 5.1E-14 108.4 10.8 153 732-912 35-194 (224)
15 2pl3_A Probable ATP-dependent 98.9 2.4E-09 8.2E-14 108.2 10.5 153 732-912 46-210 (236)
16 1t6n_A Probable ATP-dependent 98.9 6.7E-09 2.3E-13 103.6 12.8 152 733-912 36-198 (220)
17 1rif_A DAR protein, DNA helica 98.9 5.7E-09 1.9E-13 108.9 11.9 128 732-892 112-241 (282)
18 1hv8_A Putative ATP-dependent 98.9 4.1E-09 1.4E-13 110.6 10.4 153 732-911 27-185 (367)
19 3iuy_A Probable ATP-dependent 98.9 1.1E-08 3.9E-13 102.7 13.1 154 732-912 41-206 (228)
20 1vec_A ATP-dependent RNA helic 98.8 1.9E-08 6.4E-13 99.0 12.3 154 732-912 24-185 (206)
21 2fz4_A DNA repair protein RAD2 98.8 2.2E-08 7.6E-13 103.3 13.0 138 731-914 91-229 (237)
22 3dkp_A Probable ATP-dependent 98.8 1.4E-08 4.9E-13 103.0 10.7 135 732-890 50-189 (245)
23 3bor_A Human initiation factor 98.8 1.2E-08 4.3E-13 103.8 10.3 151 733-911 52-211 (237)
24 2oxc_A Probable ATP-dependent 98.8 8.5E-09 2.9E-13 104.4 8.8 128 733-888 46-178 (230)
25 1wp9_A ATP-dependent RNA helic 98.8 3.3E-08 1.1E-12 106.1 12.3 153 732-914 8-167 (494)
26 3eiq_A Eukaryotic initiation f 98.7 4.8E-08 1.6E-12 104.9 13.1 155 732-912 61-222 (414)
27 2oca_A DAR protein, ATP-depend 98.7 4.9E-08 1.7E-12 109.4 13.6 149 732-913 112-262 (510)
28 1xti_A Probable ATP-dependent 98.7 6.6E-08 2.3E-12 103.0 12.9 130 733-890 30-166 (391)
29 3pey_A ATP-dependent RNA helic 98.7 7.3E-08 2.5E-12 102.1 12.9 153 732-913 26-186 (395)
30 1q0u_A Bstdead; DEAD protein, 98.7 1.7E-08 5.7E-13 101.1 7.4 155 732-913 25-190 (219)
31 3ly5_A ATP-dependent RNA helic 98.7 4.7E-08 1.6E-12 101.6 10.7 130 733-889 76-214 (262)
32 3ber_A Probable ATP-dependent 98.7 6.3E-08 2.2E-12 100.0 11.5 132 732-890 64-200 (249)
33 1s2m_A Putative ATP-dependent 98.7 1.1E-07 3.8E-12 102.1 13.7 133 733-892 43-179 (400)
34 3fe2_A Probable ATP-dependent 98.7 4.4E-08 1.5E-12 99.8 10.0 155 732-913 50-216 (242)
35 3fht_A ATP-dependent RNA helic 98.7 1.4E-07 4.8E-12 101.0 14.2 154 732-913 46-209 (412)
36 1fuu_A Yeast initiation factor 98.7 2.4E-08 8.3E-13 106.3 8.0 153 732-912 42-201 (394)
37 4a2p_A RIG-I, retinoic acid in 98.7 1E-07 3.6E-12 106.3 12.8 134 732-892 6-146 (556)
38 3tbk_A RIG-I helicase domain; 98.7 9.5E-08 3.2E-12 106.1 12.1 133 732-891 3-142 (555)
39 2j0s_A ATP-dependent RNA helic 98.6 9.1E-08 3.1E-12 103.3 11.5 153 733-912 59-218 (410)
40 3h1t_A Type I site-specific re 98.6 4.5E-08 1.5E-12 112.3 9.3 151 732-915 177-343 (590)
41 3oiy_A Reverse gyrase helicase 98.6 1.3E-07 4.5E-12 103.0 12.4 126 733-886 21-149 (414)
42 1wrb_A DJVLGB; RNA helicase, D 98.6 1.1E-07 3.7E-12 97.2 11.1 131 732-889 44-187 (253)
43 2z0m_A 337AA long hypothetical 98.6 8.6E-08 2.9E-12 99.6 10.4 125 732-889 15-142 (337)
44 3fmo_B ATP-dependent RNA helic 98.6 2.1E-07 7.1E-12 99.2 11.5 153 732-912 113-275 (300)
45 3fho_A ATP-dependent RNA helic 98.6 1E-07 3.4E-12 108.2 9.5 154 733-913 141-300 (508)
46 2fwr_A DNA repair protein RAD2 98.5 2.4E-07 8.3E-12 102.8 11.4 138 731-914 91-229 (472)
47 3fmp_B ATP-dependent RNA helic 98.5 3.8E-07 1.3E-11 101.5 12.9 153 733-913 114-276 (479)
48 2ykg_A Probable ATP-dependent 98.5 6.5E-07 2.2E-11 104.0 14.3 133 732-891 12-151 (696)
49 2i4i_A ATP-dependent RNA helic 98.5 5.6E-07 1.9E-11 96.9 12.7 131 732-889 36-188 (417)
50 4gl2_A Interferon-induced heli 98.5 1.4E-07 4.9E-12 109.5 7.4 131 732-889 6-149 (699)
51 4a2q_A RIG-I, retinoic acid in 98.5 5.4E-07 1.9E-11 107.7 12.4 133 732-891 247-386 (797)
52 3llm_A ATP-dependent RNA helic 98.4 6.1E-07 2.1E-11 91.5 10.2 129 734-893 62-194 (235)
53 1z63_A Helicase of the SNF2/RA 98.4 6.6E-07 2.2E-11 100.0 10.9 153 731-916 35-190 (500)
54 2va8_A SSO2462, SKI2-type heli 98.3 9.2E-07 3.2E-11 103.9 10.3 127 732-889 29-158 (715)
55 2db3_A ATP-dependent RNA helic 98.3 1.7E-06 5.7E-11 96.1 11.4 133 733-890 78-217 (434)
56 4a4z_A Antiviral helicase SKI2 98.3 2.3E-06 7.9E-11 105.6 13.4 124 731-890 37-161 (997)
57 2p6r_A Afuhel308 helicase; pro 98.3 1.3E-06 4.4E-11 102.7 10.6 123 733-888 25-150 (702)
58 3i5x_A ATP-dependent RNA helic 98.3 1.1E-06 3.7E-11 99.8 8.9 133 733-889 94-239 (563)
59 4a2w_A RIG-I, retinoic acid in 98.3 1.2E-06 4.3E-11 107.0 10.0 133 732-891 247-386 (936)
60 3sqw_A ATP-dependent RNA helic 98.3 1.1E-06 3.8E-11 100.9 8.9 132 732-889 42-188 (579)
61 2eyq_A TRCF, transcription-rep 98.3 4.6E-06 1.6E-10 104.3 14.8 131 732-888 602-737 (1151)
62 1gm5_A RECG; helicase, replica 98.3 3.8E-06 1.3E-10 101.3 13.5 129 732-888 367-502 (780)
63 3l9o_A ATP-dependent RNA helic 98.3 2.4E-06 8.4E-11 106.4 11.6 122 732-891 183-305 (1108)
64 3dmq_A RNA polymerase-associat 98.2 5.6E-06 1.9E-10 101.7 13.7 162 732-918 152-321 (968)
65 2xgj_A ATP-dependent RNA helic 98.2 5.5E-06 1.9E-10 102.4 13.1 121 732-890 85-206 (1010)
66 2zj8_A DNA helicase, putative 98.2 3.4E-06 1.2E-10 99.5 10.7 125 733-888 23-150 (720)
67 4ddu_A Reverse gyrase; topoiso 98.2 4.5E-06 1.5E-10 104.0 12.0 126 733-886 78-206 (1104)
68 1z3i_X Similar to RAD54-like; 98.1 8.9E-06 3E-10 95.5 11.8 167 732-917 54-234 (644)
69 3mwy_W Chromo domain-containin 98.0 1.5E-05 5.1E-10 95.8 10.1 172 731-917 234-409 (800)
70 3u4q_A ATP-dependent helicase/ 97.9 5.7E-06 2E-10 103.9 6.2 68 731-808 8-79 (1232)
71 1gku_B Reverse gyrase, TOP-RG; 97.9 1.8E-05 6.2E-10 98.1 10.3 128 734-889 58-188 (1054)
72 2xau_A PRE-mRNA-splicing facto 97.9 1.5E-05 5E-10 96.0 9.0 148 735-911 95-247 (773)
73 3o8b_A HCV NS3 protease/helica 97.9 5.2E-05 1.8E-09 90.2 12.9 103 753-895 234-336 (666)
74 4f92_B U5 small nuclear ribonu 97.9 2E-05 6.7E-10 102.2 9.8 133 732-890 925-1060(1724)
75 2w00_A HSDR, R.ECOR124I; ATP-b 97.9 2.9E-05 9.8E-10 96.4 10.0 152 733-914 271-439 (1038)
76 2vl7_A XPD; helicase, unknown 97.8 2.3E-05 8E-10 90.1 8.3 66 733-808 7-73 (540)
77 3crv_A XPD/RAD3 related DNA he 97.8 2.1E-05 7.3E-10 90.4 8.0 66 733-808 3-69 (551)
78 2v1x_A ATP-dependent DNA helic 97.7 9.9E-05 3.4E-09 86.2 11.3 130 732-889 43-178 (591)
79 2zpa_A Uncharacterized protein 97.6 8.2E-05 2.8E-09 88.5 8.7 65 732-807 174-238 (671)
80 2l8b_A Protein TRAI, DNA helic 97.6 8.6E-05 2.9E-09 76.0 7.0 128 735-918 36-163 (189)
81 1oyw_A RECQ helicase, ATP-depe 97.6 4.9E-05 1.7E-09 87.2 5.8 127 733-889 25-152 (523)
82 2b8t_A Thymidine kinase; deoxy 97.6 3.7E-05 1.3E-09 79.9 4.4 35 753-794 14-48 (223)
83 2orw_A Thymidine kinase; TMTK, 97.5 0.00019 6.6E-09 71.6 8.1 36 753-795 5-40 (184)
84 2z83_A Helicase/nucleoside tri 97.5 0.0003 1E-08 79.2 10.6 48 753-807 23-71 (459)
85 4f92_B U5 small nuclear ribonu 97.5 0.00025 8.5E-09 92.2 11.0 128 732-886 78-217 (1724)
86 2jlq_A Serine protease subunit 97.5 0.00031 1.1E-08 78.8 10.3 58 741-807 11-69 (451)
87 2chg_A Replication factor C sm 97.4 0.00083 2.8E-08 64.7 11.0 42 734-781 21-62 (226)
88 1l8q_A Chromosomal replication 97.3 0.0022 7.6E-08 67.9 14.3 52 735-793 19-72 (324)
89 1xx6_A Thymidine kinase; NESG, 97.3 0.00062 2.1E-08 69.0 8.9 36 753-795 10-45 (191)
90 2whx_A Serine protease/ntpase/ 97.2 0.00026 9E-09 83.2 6.6 57 741-807 179-236 (618)
91 2v6i_A RNA helicase; membrane, 97.2 0.0016 5.4E-08 72.8 12.1 48 753-807 4-52 (431)
92 1sxj_E Activator 1 40 kDa subu 97.2 0.00079 2.7E-08 71.6 9.0 40 734-779 18-58 (354)
93 1iqp_A RFCS; clamp loader, ext 97.2 0.0016 5.4E-08 67.8 11.0 42 734-781 29-70 (327)
94 2v1u_A Cell division control p 97.2 0.00045 1.5E-08 73.3 6.6 41 735-781 24-68 (387)
95 2j9r_A Thymidine kinase; TK1, 97.1 0.00078 2.7E-08 70.1 7.9 36 753-795 30-65 (214)
96 1yks_A Genome polyprotein [con 97.0 0.0014 4.9E-08 73.4 9.7 49 753-808 10-59 (440)
97 1fnn_A CDC6P, cell division co 97.0 0.0015 5.1E-08 69.7 8.9 68 735-808 22-96 (389)
98 3te6_A Regulatory protein SIR3 97.0 0.0017 5.7E-08 71.0 9.5 43 876-918 132-177 (318)
99 2chq_A Replication factor C sm 97.0 0.00098 3.3E-08 69.1 7.3 42 734-781 21-62 (319)
100 2wv9_A Flavivirin protease NS2 97.0 0.00087 3E-08 79.7 7.6 69 733-808 215-292 (673)
101 1ojl_A Transcriptional regulat 97.0 0.0032 1.1E-07 67.3 11.0 26 750-781 24-49 (304)
102 1w4r_A Thymidine kinase; type 97.0 0.00063 2.2E-08 69.9 5.2 36 753-795 22-57 (195)
103 1w36_B RECB, exodeoxyribonucle 97.0 0.00058 2E-08 85.6 6.0 53 752-809 17-79 (1180)
104 2gno_A DNA polymerase III, gam 96.9 0.0012 4.2E-08 71.0 6.8 49 875-923 81-132 (305)
105 3rc3_A ATP-dependent RNA helic 96.8 0.0021 7.1E-08 76.6 9.0 45 753-808 157-201 (677)
106 3u61_B DNA polymerase accessor 96.8 0.0055 1.9E-07 64.7 11.3 42 732-779 28-70 (324)
107 3u4q_B ATP-dependent helicase/ 96.8 0.0022 7.6E-08 80.1 9.2 52 754-811 4-56 (1166)
108 1a5t_A Delta prime, HOLB; zinc 96.7 0.0051 1.8E-07 66.2 10.1 48 875-923 107-158 (334)
109 2o0j_A Terminase, DNA packagin 96.7 0.024 8.2E-07 63.5 15.6 151 732-916 162-316 (385)
110 3bos_A Putative DNA replicatio 96.6 0.0044 1.5E-07 61.1 8.2 54 733-793 34-87 (242)
111 4b4t_M 26S protease regulatory 96.6 0.0053 1.8E-07 69.7 9.8 60 726-795 177-249 (434)
112 3ec2_A DNA replication protein 96.6 0.0019 6.5E-08 62.6 5.2 52 735-792 16-73 (180)
113 1sxj_A Activator 1 95 kDa subu 96.5 0.0063 2.1E-07 69.6 9.6 44 732-781 41-101 (516)
114 1g5t_A COB(I)alamin adenosyltr 96.5 0.0078 2.7E-07 61.8 9.2 39 751-796 28-66 (196)
115 3e2i_A Thymidine kinase; Zn-bi 96.5 0.0039 1.3E-07 65.2 7.0 36 875-911 100-135 (219)
116 4b4t_L 26S protease subunit RP 96.4 0.016 5.4E-07 66.0 12.4 58 727-794 178-248 (437)
117 4b4t_K 26S protease regulatory 96.4 0.0028 9.5E-08 71.9 6.2 59 727-795 169-240 (428)
118 1jr3_A DNA polymerase III subu 96.4 0.018 6.2E-07 61.2 12.2 42 735-782 21-63 (373)
119 3cpe_A Terminase, DNA packagin 96.4 0.036 1.2E-06 64.6 15.6 69 732-808 162-230 (592)
120 1jbk_A CLPB protein; beta barr 96.3 0.0038 1.3E-07 58.7 5.5 41 735-781 27-67 (195)
121 4b4t_H 26S protease regulatory 96.3 0.016 5.5E-07 66.5 11.6 59 726-794 205-276 (467)
122 3kl4_A SRP54, signal recogniti 96.3 0.015 5E-07 66.2 10.9 38 753-797 99-137 (433)
123 4b4t_J 26S protease regulatory 96.2 0.013 4.5E-07 66.1 10.2 59 726-794 144-215 (405)
124 3n70_A Transport activator; si 96.2 0.003 1E-07 59.8 4.2 25 750-780 23-47 (145)
125 4b4t_I 26S protease regulatory 96.2 0.024 8.1E-07 64.7 12.1 57 727-793 179-248 (437)
126 2p65_A Hypothetical protein PF 96.2 0.0073 2.5E-07 57.0 6.6 42 735-782 27-68 (187)
127 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0056 1.9E-07 62.0 5.7 47 729-781 5-63 (262)
128 2w58_A DNAI, primosome compone 96.1 0.0045 1.5E-07 60.8 4.7 34 752-792 55-88 (202)
129 1tf5_A Preprotein translocase 96.1 0.028 9.5E-07 68.6 12.3 121 733-887 83-214 (844)
130 3h4m_A Proteasome-activating n 96.0 0.0039 1.3E-07 64.3 4.2 46 729-780 16-74 (285)
131 1nkt_A Preprotein translocase 96.0 0.021 7.2E-07 70.1 10.8 121 734-888 112-243 (922)
132 1ofh_A ATP-dependent HSL prote 95.9 0.0059 2E-07 63.1 4.7 41 735-781 20-74 (310)
133 2fsf_A Preprotein translocase 95.8 0.033 1.1E-06 68.0 11.3 123 733-889 74-207 (853)
134 2r62_A Cell division protease 95.8 0.0072 2.5E-07 61.9 4.9 45 731-781 12-68 (268)
135 3syl_A Protein CBBX; photosynt 95.7 0.0064 2.2E-07 63.3 4.4 26 752-783 68-93 (309)
136 3eie_A Vacuolar protein sortin 95.7 0.0072 2.5E-07 64.5 4.8 49 727-781 15-75 (322)
137 3dm5_A SRP54, signal recogniti 95.7 0.027 9.1E-07 64.3 9.6 37 753-796 102-139 (443)
138 4a15_A XPD helicase, ATP-depen 95.6 0.012 4.1E-07 69.2 6.6 68 735-808 5-73 (620)
139 1sxj_D Activator 1 41 kDa subu 95.6 0.0084 2.9E-07 63.2 4.6 43 734-782 41-83 (353)
140 3cf0_A Transitional endoplasmi 95.6 0.008 2.7E-07 63.7 4.4 48 728-781 13-73 (301)
141 1hqc_A RUVB; extended AAA-ATPa 95.5 0.034 1.2E-06 58.2 8.8 42 734-781 16-62 (324)
142 1g8p_A Magnesium-chelatase 38 95.5 0.0087 3E-07 63.2 4.2 40 736-781 30-69 (350)
143 3b9p_A CG5977-PA, isoform A; A 95.4 0.01 3.4E-07 61.8 4.5 47 729-781 20-78 (297)
144 3co5_A Putative two-component 95.4 0.005 1.7E-07 58.3 1.8 30 736-765 10-41 (143)
145 1c4o_A DNA nucleotide excision 95.3 0.037 1.3E-06 65.6 9.3 78 732-819 7-86 (664)
146 2bjv_A PSP operon transcriptio 95.3 0.016 5.5E-07 59.5 5.5 26 751-782 29-54 (265)
147 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.012 4.2E-07 63.3 4.7 49 727-781 9-69 (322)
148 2ipc_A Preprotein translocase 95.3 0.063 2.1E-06 66.1 11.3 135 733-911 79-227 (997)
149 2orv_A Thymidine kinase; TP4A 95.2 0.039 1.3E-06 58.2 8.2 36 753-795 21-56 (234)
150 1lv7_A FTSH; alpha/beta domain 95.2 0.012 4.2E-07 60.1 4.3 47 729-781 11-69 (257)
151 2z4s_A Chromosomal replication 95.2 0.034 1.2E-06 62.6 8.1 54 735-794 113-168 (440)
152 2qby_B CDC6 homolog 3, cell di 95.1 0.016 5.3E-07 61.9 4.8 41 735-781 25-69 (384)
153 1njg_A DNA polymerase III subu 95.1 0.017 5.9E-07 55.9 4.7 43 734-782 27-70 (250)
154 2qby_A CDC6 homolog 1, cell di 95.0 0.016 5.6E-07 61.1 4.7 42 735-782 25-70 (386)
155 1sxj_C Activator 1 40 kDa subu 95.0 0.021 7.1E-07 61.1 5.3 42 735-782 30-71 (340)
156 3hws_A ATP-dependent CLP prote 95.0 0.01 3.4E-07 64.3 2.9 25 751-781 51-75 (363)
157 3pxg_A Negative regulator of g 94.9 0.028 9.4E-07 63.7 6.3 43 735-783 185-227 (468)
158 2qp9_X Vacuolar protein sortin 94.8 0.017 5.8E-07 63.0 4.2 47 729-781 50-108 (355)
159 1sxj_B Activator 1 37 kDa subu 94.8 0.023 8E-07 58.8 5.0 42 734-781 25-66 (323)
160 3pfi_A Holliday junction ATP-d 94.8 0.061 2.1E-06 56.9 8.2 66 733-807 32-102 (338)
161 2r44_A Uncharacterized protein 94.8 0.015 5E-07 61.8 3.4 38 736-781 33-70 (331)
162 3d8b_A Fidgetin-like protein 1 94.7 0.021 7.1E-07 62.1 4.6 46 729-780 83-140 (357)
163 3vfd_A Spastin; ATPase, microt 94.7 0.023 7.8E-07 62.3 4.8 46 728-779 113-170 (389)
164 3uk6_A RUVB-like 2; hexameric 94.7 0.019 6.5E-07 61.3 4.1 43 734-782 48-95 (368)
165 3pvs_A Replication-associated 94.6 0.043 1.5E-06 62.1 7.0 36 740-781 39-74 (447)
166 4fcw_A Chaperone protein CLPB; 94.6 0.02 7E-07 59.5 4.0 26 752-783 48-73 (311)
167 2zan_A Vacuolar protein sortin 94.5 0.026 8.8E-07 63.5 4.9 48 728-781 132-191 (444)
168 2kjq_A DNAA-related protein; s 94.4 0.053 1.8E-06 52.2 6.0 41 733-783 22-62 (149)
169 3t15_A Ribulose bisphosphate c 94.3 0.014 4.8E-07 61.9 2.0 23 753-781 38-60 (293)
170 3pxi_A Negative regulator of g 94.2 0.046 1.6E-06 65.2 6.3 41 735-781 185-225 (758)
171 1d2n_A N-ethylmaleimide-sensit 94.1 0.025 8.5E-07 58.4 3.4 25 751-781 64-88 (272)
172 1tue_A Replication protein E1; 93.8 0.027 9.2E-07 58.7 2.9 37 739-781 45-82 (212)
173 1twf_A B220, DNA-directed RNA 93.8 0.011 3.8E-07 76.8 0.0 6 262-267 1710-1715(1733)
174 1um8_A ATP-dependent CLP prote 93.7 0.027 9.2E-07 61.1 2.9 25 751-781 72-96 (376)
175 2c9o_A RUVB-like 1; hexameric 93.5 0.036 1.2E-06 62.3 3.6 44 733-782 40-88 (456)
176 2qgz_A Helicase loader, putati 93.4 0.077 2.6E-06 56.9 5.7 34 752-792 153-187 (308)
177 3hu3_A Transitional endoplasmi 93.2 0.047 1.6E-06 62.6 3.9 45 729-779 203-260 (489)
178 1ixz_A ATP-dependent metallopr 93.2 0.061 2.1E-06 54.8 4.3 48 728-781 14-73 (254)
179 1in4_A RUVB, holliday junction 93.2 0.058 2E-06 58.0 4.4 41 735-781 30-75 (334)
180 2dr3_A UPF0273 protein PH0284; 93.0 0.072 2.5E-06 53.1 4.5 48 752-807 24-71 (247)
181 2d7d_A Uvrabc system protein B 92.8 0.2 7E-06 59.3 8.6 78 732-819 11-90 (661)
182 1qvr_A CLPB protein; coiled co 92.7 0.15 5.2E-06 61.8 7.5 43 735-783 175-217 (854)
183 1r6b_X CLPA protein; AAA+, N-t 92.7 0.09 3.1E-06 62.5 5.4 41 735-781 191-231 (758)
184 3nbx_X ATPase RAVA; AAA+ ATPas 92.6 0.026 9E-07 65.0 0.7 36 738-781 30-65 (500)
185 1iy2_A ATP-dependent metallopr 92.3 0.094 3.2E-06 54.5 4.4 49 728-782 38-98 (278)
186 1u0j_A DNA replication protein 92.3 0.075 2.6E-06 57.0 3.6 43 732-780 82-127 (267)
187 2x8a_A Nuclear valosin-contain 92.2 0.044 1.5E-06 57.8 1.7 31 754-793 47-77 (274)
188 1w5s_A Origin recognition comp 91.7 0.11 3.7E-06 55.9 4.1 40 736-781 28-76 (412)
189 3k1j_A LON protease, ATP-depen 91.7 0.075 2.6E-06 62.0 3.0 40 736-783 47-86 (604)
190 2r2a_A Uncharacterized protein 91.4 0.06 2.1E-06 54.7 1.6 40 874-913 85-132 (199)
191 2ce7_A Cell division protein F 91.3 0.12 4.2E-06 59.3 4.2 47 729-781 15-73 (476)
192 3cmu_A Protein RECA, recombina 91.2 0.24 8.3E-06 65.6 7.3 58 742-806 1415-1475(2050)
193 2z0h_A DTMP kinase, thymidylat 91.2 0.23 7.8E-06 47.9 5.4 46 754-806 3-49 (197)
194 2zts_A Putative uncharacterize 91.1 0.15 5.1E-06 50.8 4.2 50 752-808 31-80 (251)
195 3bh0_A DNAB-like replicative h 91.0 0.28 9.5E-06 52.6 6.4 59 742-808 58-117 (315)
196 2w0m_A SSO2452; RECA, SSPF, un 90.8 0.23 7.7E-06 48.7 5.1 59 741-807 11-71 (235)
197 3io5_A Recombination and repai 90.5 0.14 4.7E-06 56.6 3.5 61 741-806 13-78 (333)
198 1cr0_A DNA primase/helicase; R 90.3 0.3 1E-05 51.1 5.7 60 742-808 25-85 (296)
199 1g41_A Heat shock protein HSLU 90.3 0.16 5.3E-06 58.0 3.8 24 752-781 51-74 (444)
200 2dhr_A FTSH; AAA+ protein, hex 90.1 0.24 8.1E-06 57.2 5.2 48 728-781 29-88 (499)
201 1ls1_A Signal recognition part 90.1 0.95 3.2E-05 48.3 9.4 34 753-793 100-133 (295)
202 3cf2_A TER ATPase, transitiona 89.5 0.21 7.1E-06 60.9 4.2 47 727-779 474-533 (806)
203 1w36_B RECB, exodeoxyribonucle 89.4 0.16 5.4E-06 63.9 3.2 40 876-916 377-418 (1180)
204 3hr8_A Protein RECA; alpha and 89.4 0.23 7.9E-06 55.0 4.2 60 740-806 47-109 (356)
205 3pxi_A Negative regulator of g 89.3 0.34 1.2E-05 57.8 5.8 25 753-783 523-547 (758)
206 3kb2_A SPBC2 prophage-derived 88.9 0.16 5.6E-06 47.7 2.2 23 753-781 3-25 (173)
207 3m6a_A ATP-dependent protease 88.8 0.22 7.5E-06 57.6 3.6 25 752-782 109-133 (543)
208 2r8r_A Sensor protein; KDPD, P 88.7 0.26 8.9E-06 51.8 3.8 33 753-792 8-40 (228)
209 1ypw_A Transitional endoplasmi 88.5 0.15 5E-06 61.9 2.0 46 729-780 203-261 (806)
210 3cf2_A TER ATPase, transitiona 88.5 0.13 4.6E-06 62.6 1.7 20 754-779 241-260 (806)
211 3u4q_A ATP-dependent helicase/ 88.5 0.19 6.5E-06 63.5 3.1 58 875-940 399-459 (1232)
212 2zr9_A Protein RECA, recombina 88.4 0.29 9.9E-06 53.7 4.1 50 741-797 48-100 (349)
213 1ly1_A Polynucleotide kinase; 88.3 0.17 5.8E-06 47.9 1.9 21 753-779 4-24 (181)
214 1nlf_A Regulatory protein REPA 88.2 0.44 1.5E-05 49.5 5.1 48 753-807 32-88 (279)
215 1xp8_A RECA protein, recombina 88.0 0.31 1.1E-05 54.0 4.1 58 741-805 61-121 (366)
216 2r6a_A DNAB helicase, replicat 87.9 0.64 2.2E-05 52.2 6.6 60 741-807 192-252 (454)
217 1nks_A Adenylate kinase; therm 87.9 0.2 6.9E-06 47.8 2.1 33 753-792 3-35 (194)
218 2plr_A DTMP kinase, probable t 87.8 0.44 1.5E-05 46.3 4.5 25 753-783 6-30 (213)
219 1u94_A RECA protein, recombina 87.6 0.36 1.2E-05 53.2 4.3 49 741-796 50-101 (356)
220 2pbr_A DTMP kinase, thymidylat 87.4 0.67 2.3E-05 44.3 5.5 31 754-791 3-33 (195)
221 1p9r_A General secretion pathw 87.2 0.57 2E-05 52.8 5.6 54 731-792 148-201 (418)
222 3lw7_A Adenylate kinase relate 87.1 0.19 6.7E-06 46.7 1.5 19 753-777 3-21 (179)
223 2qen_A Walker-type ATPase; unk 87.1 0.78 2.7E-05 47.7 6.2 29 735-765 17-45 (350)
224 1qhx_A CPT, protein (chloramph 87.0 0.22 7.6E-06 47.5 1.9 22 753-780 5-26 (178)
225 3trf_A Shikimate kinase, SK; a 86.9 0.25 8.6E-06 47.5 2.2 23 753-781 7-29 (185)
226 2cvh_A DNA repair and recombin 86.9 0.58 2E-05 45.7 4.9 45 741-795 8-54 (220)
227 1qvr_A CLPB protein; coiled co 86.9 0.31 1.1E-05 59.1 3.5 26 752-783 589-614 (854)
228 1kht_A Adenylate kinase; phosp 86.8 0.25 8.7E-06 47.2 2.2 24 753-782 5-28 (192)
229 1r6b_X CLPA protein; AAA+, N-t 86.8 0.31 1.1E-05 57.9 3.3 23 753-781 490-512 (758)
230 2yvu_A Probable adenylyl-sulfa 86.7 0.38 1.3E-05 46.6 3.4 33 753-792 15-47 (186)
231 3iij_A Coilin-interacting nucl 86.7 0.29 9.8E-06 47.1 2.5 23 753-781 13-35 (180)
232 2q6t_A DNAB replication FORK h 86.5 0.82 2.8E-05 51.2 6.4 61 741-808 189-250 (444)
233 1ypw_A Transitional endoplasmi 86.5 0.3 1E-05 59.2 3.1 49 728-782 475-536 (806)
234 4eun_A Thermoresistant glucoki 86.3 0.3 1E-05 48.2 2.4 24 752-781 30-53 (200)
235 3f9v_A Minichromosome maintena 86.3 0.2 6.9E-06 58.7 1.4 22 753-780 329-350 (595)
236 1kag_A SKI, shikimate kinase I 86.0 0.25 8.6E-06 46.9 1.7 23 753-781 6-28 (173)
237 1via_A Shikimate kinase; struc 85.9 0.31 1E-05 46.8 2.2 23 753-781 6-28 (175)
238 2px0_A Flagellar biosynthesis 85.8 0.47 1.6E-05 50.8 3.8 35 753-793 107-141 (296)
239 3vaa_A Shikimate kinase, SK; s 85.7 0.31 1.1E-05 48.0 2.2 23 753-781 27-49 (199)
240 2rhm_A Putative kinase; P-loop 85.5 0.31 1.1E-05 46.8 2.0 39 753-808 7-45 (193)
241 3p32_A Probable GTPase RV1496/ 85.4 0.7 2.4E-05 50.3 5.0 36 752-794 80-115 (355)
242 2fna_A Conserved hypothetical 85.3 0.46 1.6E-05 49.5 3.4 26 736-765 19-44 (357)
243 2v3c_C SRP54, signal recogniti 85.3 0.6 2E-05 52.8 4.5 34 753-793 101-134 (432)
244 1nn5_A Similar to deoxythymidy 85.0 0.98 3.3E-05 44.1 5.4 30 753-789 11-40 (215)
245 1n0w_A DNA repair protein RAD5 85.0 0.59 2E-05 46.4 3.9 25 741-765 12-38 (243)
246 1gvn_B Zeta; postsegregational 84.9 0.53 1.8E-05 50.0 3.7 21 753-779 35-55 (287)
247 3sr0_A Adenylate kinase; phosp 84.8 0.36 1.2E-05 49.2 2.2 22 754-781 3-24 (206)
248 1tev_A UMP-CMP kinase; ploop, 84.7 0.38 1.3E-05 46.0 2.2 23 753-781 5-27 (196)
249 2vli_A Antibiotic resistance p 84.7 0.36 1.2E-05 46.1 2.1 22 753-780 7-28 (183)
250 3t61_A Gluconokinase; PSI-biol 84.7 0.38 1.3E-05 47.2 2.3 23 753-781 20-42 (202)
251 1q57_A DNA primase/helicase; d 84.7 0.59 2E-05 53.0 4.1 50 752-808 243-292 (503)
252 3dl0_A Adenylate kinase; phosp 84.7 0.33 1.1E-05 48.0 1.9 20 754-779 3-22 (216)
253 3fb4_A Adenylate kinase; psych 84.7 0.37 1.3E-05 47.5 2.2 22 754-781 3-24 (216)
254 2cdn_A Adenylate kinase; phosp 84.6 0.38 1.3E-05 47.2 2.2 23 753-781 22-44 (201)
255 3cm0_A Adenylate kinase; ATP-b 84.5 0.39 1.3E-05 46.1 2.2 23 753-781 6-28 (186)
256 3umf_A Adenylate kinase; rossm 84.4 0.38 1.3E-05 49.6 2.2 23 753-781 31-53 (217)
257 1zp6_A Hypothetical protein AT 84.3 0.32 1.1E-05 46.9 1.5 21 753-779 11-31 (191)
258 2iyv_A Shikimate kinase, SK; t 84.2 0.44 1.5E-05 45.8 2.5 23 753-781 4-26 (184)
259 4a1f_A DNAB helicase, replicat 84.1 1.4 4.8E-05 48.5 6.6 59 742-808 36-95 (338)
260 3a4m_A L-seryl-tRNA(SEC) kinas 84.0 0.65 2.2E-05 48.1 3.8 31 753-790 6-36 (260)
261 3bgw_A DNAB-like replicative h 84.0 1 3.5E-05 50.9 5.7 59 742-808 187-246 (444)
262 1knq_A Gluconate kinase; ALFA/ 84.0 0.42 1.5E-05 45.6 2.2 23 753-781 10-32 (175)
263 2jaq_A Deoxyguanosine kinase; 84.0 0.42 1.4E-05 46.1 2.2 22 754-781 3-24 (205)
264 1zak_A Adenylate kinase; ATP:A 83.9 0.41 1.4E-05 47.8 2.2 23 753-781 7-29 (222)
265 4edh_A DTMP kinase, thymidylat 83.8 1.1 3.8E-05 45.7 5.3 48 753-807 8-56 (213)
266 3b85_A Phosphate starvation-in 83.7 1 3.5E-05 45.8 5.0 37 735-780 9-45 (208)
267 2c95_A Adenylate kinase 1; tra 83.7 0.42 1.4E-05 46.0 2.0 23 753-781 11-33 (196)
268 1aky_A Adenylate kinase; ATP:A 83.7 0.43 1.5E-05 47.5 2.2 23 753-781 6-28 (220)
269 4eaq_A DTMP kinase, thymidylat 83.5 0.8 2.7E-05 46.9 4.2 32 753-792 28-59 (229)
270 2bwj_A Adenylate kinase 5; pho 83.4 0.43 1.5E-05 46.0 2.0 23 753-781 14-36 (199)
271 1e6c_A Shikimate kinase; phosp 83.4 0.48 1.7E-05 44.8 2.3 23 753-781 4-26 (173)
272 1qf9_A UMP/CMP kinase, protein 83.4 0.44 1.5E-05 45.5 2.0 23 753-781 8-30 (194)
273 1v5w_A DMC1, meiotic recombina 83.1 0.84 2.9E-05 49.6 4.3 61 742-807 111-178 (343)
274 2wsm_A Hydrogenase expression/ 82.9 0.89 3E-05 44.7 4.1 50 735-792 14-63 (221)
275 1ak2_A Adenylate kinase isoenz 82.8 0.49 1.7E-05 47.9 2.2 23 753-781 18-40 (233)
276 1e9r_A Conjugal transfer prote 82.6 1 3.5E-05 49.7 4.9 40 753-799 55-94 (437)
277 3jux_A Protein translocase sub 82.4 3.3 0.00011 50.5 9.4 139 755-913 92-272 (822)
278 1y63_A LMAJ004144AAA protein; 82.3 0.48 1.6E-05 46.2 1.9 21 753-779 12-32 (184)
279 3uie_A Adenylyl-sulfate kinase 82.3 0.88 3E-05 44.8 3.8 45 729-783 7-51 (200)
280 2ze6_A Isopentenyl transferase 82.3 0.52 1.8E-05 48.9 2.2 21 753-779 3-23 (253)
281 2wwf_A Thymidilate kinase, put 82.2 0.51 1.8E-05 46.1 2.0 25 753-783 12-36 (212)
282 1vma_A Cell division protein F 82.2 0.85 2.9E-05 49.3 3.9 34 753-793 106-139 (306)
283 1ye8_A Protein THEP1, hypothet 82.0 0.55 1.9E-05 46.4 2.2 23 754-782 3-25 (178)
284 1m7g_A Adenylylsulfate kinase; 82.0 0.84 2.9E-05 45.3 3.5 24 753-782 27-50 (211)
285 2z43_A DNA repair and recombin 81.9 0.84 2.9E-05 48.9 3.7 60 742-806 96-162 (324)
286 3tlx_A Adenylate kinase 2; str 81.8 0.55 1.9E-05 48.2 2.2 23 753-781 31-53 (243)
287 1e4v_A Adenylate kinase; trans 81.8 0.54 1.8E-05 46.8 2.0 22 754-781 3-24 (214)
288 3be4_A Adenylate kinase; malar 81.6 0.55 1.9E-05 47.0 2.0 23 753-781 7-29 (217)
289 2j37_W Signal recognition part 81.5 1.1 3.8E-05 51.8 4.8 43 753-802 103-148 (504)
290 1zd8_A GTP:AMP phosphotransfer 81.5 0.5 1.7E-05 47.4 1.7 21 753-779 9-29 (227)
291 2ehv_A Hypothetical protein PH 81.4 1.3 4.6E-05 44.0 4.7 21 752-778 31-51 (251)
292 2xb4_A Adenylate kinase; ATP-b 81.3 0.6 2E-05 47.1 2.2 22 754-781 3-24 (223)
293 1zuh_A Shikimate kinase; alpha 81.3 0.63 2.1E-05 44.2 2.2 23 753-781 9-31 (168)
294 2a5y_B CED-4; apoptosis; HET: 81.1 1 3.5E-05 51.6 4.3 68 736-809 134-210 (549)
295 2bdt_A BH3686; alpha-beta prot 81.1 0.57 1.9E-05 45.4 1.9 21 753-779 4-24 (189)
296 1ex7_A Guanylate kinase; subst 81.0 0.65 2.2E-05 46.9 2.3 13 753-765 3-15 (186)
297 3c8u_A Fructokinase; YP_612366 81.0 0.84 2.9E-05 45.3 3.1 25 753-783 24-48 (208)
298 2pt5_A Shikimate kinase, SK; a 80.8 0.67 2.3E-05 43.7 2.2 22 754-781 3-24 (168)
299 3l0o_A Transcription terminati 80.7 1.1 3.7E-05 51.0 4.2 42 739-786 163-205 (427)
300 2qor_A Guanylate kinase; phosp 80.7 0.6 2.1E-05 46.1 2.0 23 752-780 13-35 (204)
301 2j41_A Guanylate kinase; GMP, 80.4 0.45 1.5E-05 46.2 0.9 23 753-781 8-30 (207)
302 2p5t_B PEZT; postsegregational 80.1 0.53 1.8E-05 48.5 1.4 23 753-781 34-56 (253)
303 3v9p_A DTMP kinase, thymidylat 80.1 1.5 5.1E-05 45.5 4.7 48 753-806 27-78 (227)
304 1xjc_A MOBB protein homolog; s 80.0 1.2 4.1E-05 44.5 3.8 38 753-797 6-43 (169)
305 1rz3_A Hypothetical protein rb 79.9 1.7 5.8E-05 43.0 4.9 33 753-792 24-56 (201)
306 2bbw_A Adenylate kinase 4, AK4 79.9 0.71 2.4E-05 47.0 2.2 24 752-781 28-51 (246)
307 1ukz_A Uridylate kinase; trans 79.9 0.65 2.2E-05 45.4 1.9 21 753-779 17-37 (203)
308 3ice_A Transcription terminati 79.8 1.8 6.1E-05 49.3 5.5 46 736-787 159-205 (422)
309 2v54_A DTMP kinase, thymidylat 79.7 0.67 2.3E-05 45.0 1.9 22 753-780 6-27 (204)
310 1gtv_A TMK, thymidylate kinase 79.7 0.41 1.4E-05 46.8 0.4 31 754-791 3-33 (214)
311 2i1q_A DNA repair and recombin 79.6 1.2 4.2E-05 47.2 4.0 61 741-806 86-163 (322)
312 1cke_A CK, MSSA, protein (cyti 79.6 0.75 2.6E-05 45.5 2.2 23 753-781 7-29 (227)
313 3tr0_A Guanylate kinase, GMP k 79.4 0.73 2.5E-05 44.8 2.0 22 753-780 9-30 (205)
314 3lv8_A DTMP kinase, thymidylat 79.3 1.8 6.1E-05 45.2 5.0 48 753-806 29-77 (236)
315 1j8m_F SRP54, signal recogniti 79.1 1.7 5.9E-05 46.5 5.0 35 753-794 100-134 (297)
316 1svm_A Large T antigen; AAA+ f 79.1 1.2 4.1E-05 49.6 3.9 24 752-781 170-193 (377)
317 3jvv_A Twitching mobility prot 79.1 1.3 4.6E-05 48.7 4.3 44 741-791 114-157 (356)
318 1zu4_A FTSY; GTPase, signal re 78.9 1.3 4.4E-05 48.1 3.9 34 753-793 107-140 (320)
319 3tau_A Guanylate kinase, GMP k 78.8 0.69 2.4E-05 46.1 1.7 22 753-780 10-31 (208)
320 4ag6_A VIRB4 ATPase, type IV s 78.4 1.5 5.3E-05 47.8 4.4 42 752-800 36-77 (392)
321 2vhj_A Ntpase P4, P4; non- hyd 78.2 0.74 2.5E-05 50.8 1.8 13 753-765 125-137 (331)
322 4tmk_A Protein (thymidylate ki 78.1 2.1 7.2E-05 43.8 5.1 49 753-807 5-54 (213)
323 1pzn_A RAD51, DNA repair and r 78.0 1.1 3.9E-05 48.9 3.2 35 741-781 119-155 (349)
324 1kgd_A CASK, peripheral plasma 77.6 0.85 2.9E-05 44.4 1.9 23 753-781 7-29 (180)
325 4akg_A Glutathione S-transfera 77.2 1.8 6.3E-05 59.0 5.4 23 741-765 1259-1281(2695)
326 3kta_A Chromosome segregation 77.0 0.82 2.8E-05 43.8 1.6 25 752-782 27-51 (182)
327 3a00_A Guanylate kinase, GMP k 76.9 0.82 2.8E-05 44.6 1.6 24 753-782 3-26 (186)
328 2hf9_A Probable hydrogenase ni 76.6 1.4 4.7E-05 43.5 3.1 40 735-779 22-61 (226)
329 4a74_A DNA repair and recombin 76.6 1.6 5.4E-05 42.9 3.5 35 741-781 13-49 (231)
330 2pez_A Bifunctional 3'-phospho 76.2 1.8 6.3E-05 41.5 3.8 25 753-783 7-31 (179)
331 1ltq_A Polynucleotide kinase; 76.0 0.95 3.3E-05 47.0 1.9 21 753-779 4-24 (301)
332 2eyu_A Twitching motility prot 75.8 1.6 5.3E-05 45.9 3.4 46 741-793 16-61 (261)
333 1f2t_A RAD50 ABC-ATPase; DNA d 75.7 1 3.5E-05 43.2 1.9 25 752-782 24-48 (149)
334 1rj9_A FTSY, signal recognitio 75.7 1.7 5.9E-05 46.8 3.8 35 753-794 104-138 (304)
335 1lvg_A Guanylate kinase, GMP k 75.5 1.2 4.1E-05 44.2 2.3 24 753-782 6-29 (198)
336 2ewv_A Twitching motility prot 75.3 1.5 5.2E-05 48.3 3.3 34 753-792 138-171 (372)
337 3b9q_A Chloroplast SRP recepto 74.4 1.9 6.6E-05 46.3 3.7 34 753-793 102-135 (302)
338 2if2_A Dephospho-COA kinase; a 73.8 1.1 3.9E-05 43.6 1.7 20 754-779 4-23 (204)
339 3qks_A DNA double-strand break 73.6 1.2 4.2E-05 44.6 1.9 26 752-783 24-49 (203)
340 2xxa_A Signal recognition part 73.5 2.1 7.2E-05 48.4 4.0 44 753-802 102-148 (433)
341 1yrb_A ATP(GTP)binding protein 73.5 1.8 6.3E-05 43.7 3.2 34 752-793 15-48 (262)
342 2qm8_A GTPase/ATPase; G protei 73.5 2.1 7.2E-05 46.5 3.8 48 740-794 43-91 (337)
343 2www_A Methylmalonic aciduria 73.4 2.2 7.6E-05 46.5 4.0 36 752-794 75-110 (349)
344 1jjv_A Dephospho-COA kinase; P 73.4 1.2 4.1E-05 43.7 1.7 20 754-779 5-24 (206)
345 3e70_C DPA, signal recognition 73.2 2.1 7.1E-05 46.7 3.7 36 753-795 131-167 (328)
346 1z6t_A APAF-1, apoptotic prote 73.2 3.5 0.00012 46.9 5.7 31 735-765 129-161 (591)
347 1np6_A Molybdopterin-guanine d 72.4 2.5 8.4E-05 42.0 3.7 35 753-794 8-42 (174)
348 3ake_A Cytidylate kinase; CMP 72.2 1.6 5.4E-05 42.4 2.2 23 753-781 4-26 (208)
349 4gp7_A Metallophosphoesterase; 71.3 1.7 5.9E-05 42.0 2.3 13 753-765 11-23 (171)
350 2oze_A ORF delta'; para, walke 71.3 4.1 0.00014 42.3 5.3 55 737-799 21-80 (298)
351 1tf7_A KAIC; homohexamer, hexa 71.3 2.9 0.0001 47.8 4.5 57 742-806 270-328 (525)
352 2yhs_A FTSY, cell division pro 71.1 2.4 8.3E-05 49.2 3.8 44 753-803 295-341 (503)
353 2v9p_A Replication protein E1; 70.7 2 6.7E-05 46.7 2.8 30 752-791 127-156 (305)
354 3cmw_A Protein RECA, recombina 70.4 2.6 8.7E-05 55.4 4.2 55 741-802 21-78 (1706)
355 3asz_A Uridine kinase; cytidin 70.4 1.8 6E-05 42.5 2.1 24 753-782 8-31 (211)
356 3lnc_A Guanylate kinase, GMP k 70.3 1.4 4.7E-05 44.3 1.4 23 753-781 29-52 (231)
357 3cmw_A Protein RECA, recombina 70.1 2.6 8.8E-05 55.4 4.1 53 741-800 370-425 (1706)
358 2i3b_A HCR-ntpase, human cance 70.1 1.4 4.7E-05 44.2 1.3 32 753-793 3-34 (189)
359 1uf9_A TT1252 protein; P-loop, 70.0 1.6 5.4E-05 42.2 1.7 21 753-779 10-30 (203)
360 3cmu_A Protein RECA, recombina 69.9 2.7 9.1E-05 56.1 4.2 56 741-803 1068-1126(2050)
361 2og2_A Putative signal recogni 69.8 2.8 9.4E-05 46.5 3.7 34 753-793 159-192 (359)
362 3k9g_A PF-32 protein; ssgcid, 69.7 3.7 0.00013 41.9 4.4 42 754-803 31-74 (267)
363 2qt1_A Nicotinamide riboside k 69.4 1.6 5.4E-05 43.0 1.5 21 753-779 23-43 (207)
364 3aez_A Pantothenate kinase; tr 69.3 3.2 0.00011 44.8 4.0 36 753-794 92-128 (312)
365 1uj2_A Uridine-cytidine kinase 69.2 1.7 5.7E-05 44.6 1.7 23 753-781 24-46 (252)
366 3r20_A Cytidylate kinase; stru 69.2 1.9 6.6E-05 45.0 2.2 23 753-781 11-33 (233)
367 2p67_A LAO/AO transport system 69.1 4.3 0.00015 43.9 5.0 35 752-793 57-91 (341)
368 1z6g_A Guanylate kinase; struc 68.3 1.8 6E-05 43.7 1.6 23 753-781 25-47 (218)
369 1sq5_A Pantothenate kinase; P- 68.2 4.8 0.00016 42.8 5.1 33 753-791 82-115 (308)
370 3lda_A DNA repair protein RAD5 67.8 3.2 0.00011 46.5 3.8 25 741-765 166-192 (400)
371 2oap_1 GSPE-2, type II secreti 67.8 3 0.0001 48.2 3.6 41 734-782 245-285 (511)
372 1znw_A Guanylate kinase, GMP k 67.8 1.7 5.7E-05 43.1 1.3 23 753-781 22-44 (207)
373 3bs4_A Uncharacterized protein 67.6 5.3 0.00018 42.4 5.2 59 741-807 9-69 (260)
374 3gqb_B V-type ATP synthase bet 67.5 14 0.00046 42.7 8.8 37 631-670 26-62 (464)
375 1c9k_A COBU, adenosylcobinamid 67.3 2.2 7.6E-05 43.0 2.2 29 900-928 122-150 (180)
376 3hjn_A DTMP kinase, thymidylat 67.3 5.8 0.0002 39.7 5.2 46 754-806 3-49 (197)
377 3tqc_A Pantothenate kinase; bi 67.2 5.9 0.0002 43.2 5.6 35 753-793 94-129 (321)
378 2ga8_A Hypothetical 39.9 kDa p 67.1 2.3 7.7E-05 47.5 2.4 22 753-780 26-47 (359)
379 3qkt_A DNA double-strand break 67.0 2.1 7.2E-05 46.1 2.0 37 875-911 271-311 (339)
380 1ny5_A Transcriptional regulat 66.8 6.6 0.00023 43.2 6.0 26 751-782 160-185 (387)
381 3ney_A 55 kDa erythrocyte memb 66.2 2.2 7.5E-05 43.5 1.9 23 752-780 20-42 (197)
382 3ld9_A DTMP kinase, thymidylat 66.0 4.1 0.00014 42.2 3.9 50 752-807 22-73 (223)
383 3cio_A ETK, tyrosine-protein k 65.7 5.5 0.00019 42.4 4.9 34 753-793 106-140 (299)
384 3tmk_A Thymidylate kinase; pho 65.3 5.1 0.00017 41.2 4.4 46 753-807 7-53 (216)
385 3bfv_A CAPA1, CAPB2, membrane 65.3 5.3 0.00018 41.9 4.6 33 753-792 84-117 (271)
386 3ug7_A Arsenical pump-driving 65.1 5.8 0.0002 43.2 5.0 36 752-794 27-62 (349)
387 3crm_A TRNA delta(2)-isopenten 65.1 2.3 7.8E-05 46.7 1.8 21 753-779 7-27 (323)
388 3io3_A DEHA2D07832P; chaperone 65.0 4.9 0.00017 44.1 4.5 46 743-794 10-56 (348)
389 3vkg_A Dynein heavy chain, cyt 64.8 4.5 0.00016 56.1 4.9 59 739-808 1294-1353(3245)
390 3nwj_A ATSK2; P loop, shikimat 64.8 2.6 9E-05 44.1 2.2 23 753-781 50-72 (250)
391 1vht_A Dephospho-COA kinase; s 64.4 2.5 8.5E-05 41.9 1.8 21 753-779 6-26 (218)
392 3iqw_A Tail-anchored protein t 64.2 3.9 0.00013 44.6 3.5 44 744-794 9-52 (334)
393 2obl_A ESCN; ATPase, hydrolase 64.0 4.4 0.00015 44.4 3.9 49 739-794 59-107 (347)
394 1vt4_I APAF-1 related killer D 62.9 7.4 0.00025 49.4 5.9 67 736-808 134-204 (1221)
395 1s96_A Guanylate kinase, GMP k 62.8 2.7 9.4E-05 42.9 1.8 24 752-781 17-40 (219)
396 2h92_A Cytidylate kinase; ross 62.5 2.8 9.6E-05 41.3 1.8 21 753-779 5-25 (219)
397 3zvl_A Bifunctional polynucleo 62.3 2.1 7.2E-05 47.7 0.9 21 752-778 259-279 (416)
398 3gmt_A Adenylate kinase; ssgci 62.3 3 0.0001 43.7 2.0 22 754-781 11-32 (230)
399 2ffh_A Protein (FFH); SRP54, s 62.1 4.6 0.00016 45.7 3.7 34 753-793 100-133 (425)
400 1q3t_A Cytidylate kinase; nucl 62.1 3.3 0.00011 41.8 2.3 22 753-780 18-39 (236)
401 2dpy_A FLII, flagellum-specifi 62.0 3.4 0.00011 46.8 2.5 49 739-794 145-193 (438)
402 3dzd_A Transcriptional regulat 61.0 6.1 0.00021 43.3 4.3 27 750-782 151-177 (368)
403 1odf_A YGR205W, hypothetical 3 60.9 3.5 0.00012 44.0 2.4 25 753-783 33-57 (290)
404 1x6v_B Bifunctional 3'-phospho 60.8 4.9 0.00017 47.9 3.7 51 727-783 28-78 (630)
405 4hlc_A DTMP kinase, thymidylat 60.7 8.1 0.00028 39.0 4.9 46 753-806 4-50 (205)
406 2jeo_A Uridine-cytidine kinase 60.7 3.5 0.00012 41.9 2.2 23 753-781 27-49 (245)
407 1sky_E F1-ATPase, F1-ATP synth 60.0 7.1 0.00024 45.0 4.7 26 753-783 153-178 (473)
408 2f6r_A COA synthase, bifunctio 59.8 3.3 0.00011 43.6 1.8 20 753-778 77-96 (281)
409 1jr3_D DNA polymerase III, del 59.7 17 0.0006 38.5 7.5 66 749-820 16-84 (343)
410 4e22_A Cytidylate kinase; P-lo 59.4 3.3 0.00011 42.7 1.7 21 753-779 29-49 (252)
411 3la6_A Tyrosine-protein kinase 59.0 8 0.00027 41.0 4.7 38 875-916 200-237 (286)
412 1htw_A HI0065; nucleotide-bind 58.6 3.5 0.00012 40.1 1.7 23 753-781 35-57 (158)
413 3qf7_A RAD50; ABC-ATPase, ATPa 58.4 3.9 0.00013 44.8 2.2 24 752-781 24-47 (365)
414 2woo_A ATPase GET3; tail-ancho 57.9 7.3 0.00025 41.9 4.2 36 751-793 19-54 (329)
415 2qmh_A HPR kinase/phosphorylas 57.7 4.2 0.00014 42.2 2.2 13 753-765 36-48 (205)
416 2dyk_A GTP-binding protein; GT 57.6 4.1 0.00014 37.1 1.9 12 754-765 4-15 (161)
417 1nrj_B SR-beta, signal recogni 57.4 4 0.00014 39.8 1.9 13 753-765 14-26 (218)
418 3auy_A DNA double-strand break 57.4 3.8 0.00013 44.7 1.9 23 752-780 26-48 (371)
419 1tf7_A KAIC; homohexamer, hexa 57.1 6.4 0.00022 45.0 3.8 49 740-795 26-78 (525)
420 4akg_A Glutathione S-transfera 57.0 9.6 0.00033 52.3 5.9 13 753-765 647-659 (2695)
421 1fx0_B ATP synthase beta chain 56.8 4.9 0.00017 46.7 2.7 50 754-808 168-218 (498)
422 2f9l_A RAB11B, member RAS onco 56.7 4.2 0.00014 39.3 1.9 12 754-765 8-19 (199)
423 2ck3_D ATP synthase subunit be 56.6 4.5 0.00015 46.8 2.4 37 740-782 142-179 (482)
424 2grj_A Dephospho-COA kinase; T 56.1 4.8 0.00016 40.4 2.2 22 753-780 14-35 (192)
425 1a7j_A Phosphoribulokinase; tr 56.1 6.7 0.00023 41.7 3.5 24 753-782 7-30 (290)
426 3hjh_A Transcription-repair-co 55.7 15 0.00052 42.2 6.5 56 753-819 16-71 (483)
427 3zq6_A Putative arsenical pump 55.5 6.8 0.00023 42.0 3.4 35 753-794 16-50 (324)
428 1kao_A RAP2A; GTP-binding prot 55.3 4.7 0.00016 36.6 1.9 12 754-765 6-17 (167)
429 2ocp_A DGK, deoxyguanosine kin 55.0 3.8 0.00013 41.5 1.3 23 753-781 4-26 (241)
430 1z2a_A RAS-related protein RAB 54.8 4.8 0.00017 36.8 1.9 12 754-765 8-19 (168)
431 1ihu_A Arsenical pump-driving 54.7 7.4 0.00025 45.0 3.8 34 753-793 10-43 (589)
432 1ek0_A Protein (GTP-binding pr 54.3 5 0.00017 36.7 1.9 12 754-765 6-17 (170)
433 2woj_A ATPase GET3; tail-ancho 54.3 7.8 0.00027 42.4 3.7 46 744-794 11-56 (354)
434 2axn_A 6-phosphofructo-2-kinas 54.1 5 0.00017 46.3 2.2 23 753-781 37-59 (520)
435 1lw7_A Transcriptional regulat 54.0 3.6 0.00012 44.6 1.0 24 753-782 172-195 (365)
436 2ce2_X GTPase HRAS; signaling 53.9 4.8 0.00017 36.4 1.7 12 754-765 6-17 (166)
437 2ck3_A ATP synthase subunit al 53.7 11 0.00037 44.0 4.9 34 630-670 45-78 (510)
438 1wms_A RAB-9, RAB9, RAS-relate 53.7 5.1 0.00017 37.2 1.9 12 754-765 10-21 (177)
439 1oix_A RAS-related protein RAB 53.7 4.7 0.00016 39.0 1.7 12 754-765 32-43 (191)
440 1e69_A Chromosome segregation 53.3 5.5 0.00019 42.5 2.3 24 752-781 25-48 (322)
441 1nij_A Hypothetical protein YJ 53.2 8.8 0.0003 41.0 3.8 21 753-779 6-26 (318)
442 1ky3_A GTP-binding protein YPT 53.1 5.3 0.00018 37.0 1.9 12 754-765 11-22 (182)
443 3d3q_A TRNA delta(2)-isopenten 53.0 4.7 0.00016 44.5 1.7 21 753-779 9-29 (340)
444 2nzj_A GTP-binding protein REM 52.9 5.1 0.00017 37.0 1.7 12 754-765 7-18 (175)
445 2ged_A SR-beta, signal recogni 52.8 5.3 0.00018 37.9 1.9 13 753-765 50-62 (193)
446 1g16_A RAS-related protein SEC 52.7 5.2 0.00018 36.7 1.7 12 754-765 6-17 (170)
447 1fuk_A Eukaryotic initiation f 52.4 89 0.003 29.5 10.4 89 775-885 19-107 (165)
448 1u8z_A RAS-related protein RAL 52.4 5.6 0.00019 36.1 1.9 12 754-765 7-18 (168)
449 1vhk_A Hypothetical protein YQ 52.2 1E+02 0.0034 32.7 11.7 111 631-749 36-146 (268)
450 1z0j_A RAB-22, RAS-related pro 51.9 5.7 0.0002 36.4 1.9 12 754-765 9-20 (170)
451 1wp9_A ATP-dependent RNA helic 51.6 44 0.0015 35.5 8.9 54 760-820 340-393 (494)
452 1r2q_A RAS-related protein RAB 51.4 5.9 0.0002 36.2 1.9 12 754-765 9-20 (170)
453 3end_A Light-independent proto 51.4 9.5 0.00032 39.9 3.7 32 754-792 44-75 (307)
454 2gza_A Type IV secretion syste 51.3 4.6 0.00016 44.2 1.3 24 753-782 177-200 (361)
455 2wji_A Ferrous iron transport 51.2 5.6 0.00019 37.3 1.7 12 754-765 6-17 (165)
456 1z08_A RAS-related protein RAB 50.9 6 0.00021 36.3 1.8 12 754-765 9-20 (170)
457 2gks_A Bifunctional SAT/APS ki 50.8 15 0.00051 42.7 5.5 42 753-806 374-415 (546)
458 3bc1_A RAS-related protein RAB 50.7 6.1 0.00021 36.9 1.9 12 754-765 14-25 (195)
459 3q85_A GTP-binding protein REM 50.6 5.8 0.0002 36.5 1.7 12 754-765 5-16 (169)
460 3a8t_A Adenylate isopentenyltr 50.6 4.9 0.00017 44.4 1.4 13 753-765 42-54 (339)
461 1c1y_A RAS-related protein RAP 50.5 6.2 0.00021 36.0 1.9 12 754-765 6-17 (167)
462 1p5z_B DCK, deoxycytidine kina 50.4 2.8 9.7E-05 43.0 -0.5 21 753-779 26-46 (263)
463 2erx_A GTP-binding protein DI- 50.4 5.9 0.0002 36.3 1.7 12 754-765 6-17 (172)
464 2y8e_A RAB-protein 6, GH09086P 50.4 5.9 0.0002 36.6 1.7 12 754-765 17-28 (179)
465 2pt7_A CAG-ALFA; ATPase, prote 50.4 4 0.00014 44.2 0.7 33 753-792 173-205 (330)
466 1z85_A Hypothetical protein TM 50.3 1.1E+02 0.0038 31.9 11.5 105 631-750 40-144 (234)
467 3foz_A TRNA delta(2)-isopenten 50.3 5.3 0.00018 43.9 1.6 13 753-765 12-24 (316)
468 3clv_A RAB5 protein, putative; 50.2 6.3 0.00021 37.0 1.9 12 754-765 10-21 (208)
469 4dsu_A GTPase KRAS, isoform 2B 48.8 6.8 0.00023 36.6 1.9 12 754-765 7-18 (189)
470 3exa_A TRNA delta(2)-isopenten 48.7 6 0.00021 43.6 1.7 13 753-765 5-17 (322)
471 1z0f_A RAB14, member RAS oncog 48.6 6.9 0.00024 36.1 1.9 12 754-765 18-29 (179)
472 1mv5_A LMRA, multidrug resista 48.6 4.1 0.00014 42.0 0.3 33 753-792 30-62 (243)
473 3tw8_B RAS-related protein RAB 48.4 6.2 0.00021 36.6 1.5 12 754-765 12-23 (181)
474 2fn4_A P23, RAS-related protei 48.3 6.6 0.00023 36.4 1.7 12 754-765 12-23 (181)
475 3q72_A GTP-binding protein RAD 48.3 5.9 0.0002 36.3 1.4 12 754-765 5-16 (166)
476 2hxs_A RAB-26, RAS-related pro 48.2 6.7 0.00023 36.4 1.7 12 754-765 9-20 (178)
477 3cr8_A Sulfate adenylyltranfer 48.2 7.5 0.00026 45.4 2.5 32 753-790 371-402 (552)
478 2efe_B Small GTP-binding prote 48.1 7 0.00024 36.4 1.8 12 754-765 15-26 (181)
479 2oil_A CATX-8, RAS-related pro 47.8 7.2 0.00025 37.1 1.9 12 754-765 28-39 (193)
480 1r8s_A ADP-ribosylation factor 47.6 7.4 0.00025 35.6 1.9 12 754-765 3-14 (164)
481 1svi_A GTP-binding protein YSX 47.5 6.4 0.00022 37.3 1.5 13 753-765 25-37 (195)
482 2lkc_A Translation initiation 47.4 7 0.00024 36.3 1.7 13 753-765 10-22 (178)
483 2zej_A Dardarin, leucine-rich 47.4 6.5 0.00022 37.5 1.5 12 754-765 5-16 (184)
484 3kjh_A CO dehydrogenase/acetyl 47.3 7.1 0.00024 38.6 1.8 31 755-792 4-34 (254)
485 2qe7_A ATP synthase subunit al 47.1 9.6 0.00033 44.3 3.1 34 630-670 45-78 (502)
486 2f1r_A Molybdopterin-guanine d 47.0 4.3 0.00015 40.1 0.2 25 753-783 4-28 (171)
487 1tq4_A IIGP1, interferon-induc 47.0 8 0.00027 43.6 2.4 38 737-782 57-94 (413)
488 1upt_A ARL1, ADP-ribosylation 46.9 7.6 0.00026 35.7 1.9 12 754-765 10-21 (171)
489 1bif_A 6-phosphofructo-2-kinas 46.9 7.6 0.00026 43.7 2.2 21 753-779 41-61 (469)
490 3con_A GTPase NRAS; structural 46.8 7.6 0.00026 36.7 1.9 12 754-765 24-35 (190)
491 3sop_A Neuronal-specific septi 46.7 7.6 0.00026 40.9 2.0 42 876-917 113-154 (270)
492 2bov_A RAla, RAS-related prote 46.7 7.6 0.00026 37.0 1.9 12 754-765 17-28 (206)
493 2wjg_A FEOB, ferrous iron tran 46.5 7.3 0.00025 36.7 1.7 12 754-765 10-21 (188)
494 1vg8_A RAS-related protein RAB 46.5 7.7 0.00026 37.1 1.9 12 754-765 11-22 (207)
495 3tkl_A RAS-related protein RAB 46.4 7.8 0.00027 36.7 1.9 12 754-765 19-30 (196)
496 2a9k_A RAS-related protein RAL 46.3 7.9 0.00027 36.0 1.9 12 754-765 21-32 (187)
497 3pqc_A Probable GTP-binding pr 46.1 7 0.00024 36.7 1.5 12 754-765 26-37 (195)
498 2g6b_A RAS-related protein RAB 46.0 8 0.00027 36.0 1.9 20 754-779 13-32 (180)
499 2ghi_A Transport protein; mult 46.0 4.2 0.00014 42.5 -0.1 30 754-791 49-78 (260)
500 2cxx_A Probable GTP-binding pr 45.9 7.1 0.00024 36.7 1.5 19 754-778 4-22 (190)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=9.6e-50 Score=464.47 Aligned_cols=362 Identities=24% Similarity=0.243 Sum_probs=260.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHhccccccceEeeehhhhhhccccccccc------CccCCCCceEEEEEeCCCCCC-
Q 002130 557 LPSTYKDYFAALLYAEDFYEE-KWSGFQLFNVTLELHKAAIYDKSLKNKNLE------ESDETDDKLFVAFEIDSVPER- 628 (961)
Q Consensus 557 T~~NYk~rF~~LL~LEEi~~e-eirry~me~v~Lk~~~~~i~~k~L~g~~~g------~~~~~~G~~fl~LeVpgLaE~- 628 (961)
++++|+++|..||.+|+.+.. +.+.. ++...++. .+-.|.+++ ......|+.+++|+.+.....
T Consensus 3 ~~~~~~~~~~~Ll~~E~~~e~~~~~~~-~~~~~~~~-------~~~~G~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 74 (646)
T 4b3f_X 3 AVESFVTKQLDLLELERDAEVEERRSW-QENISLKE-------LQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAA 74 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSSCHHH-------HGGGTSEEEEEEEEEEEECSSSCEEEEEEESCC---C
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHH-------HHhCCceecceEEEEEEecCCCeEEEEEEecCCCCCC
Confidence 468999999999999965432 22221 11111100 001122111 112235777888987644332
Q ss_pred -CC--CCCCCCEEEEEECCC-CceeEEEEEEEEecccEEEEEECCCccc--CCCCCCcEEEEEeeChhHHHHHHHHHHHH
Q 002130 629 -RP--FLLSRDFVYAQRSGG-KSKKFQGFLYRVVKWTTVLVEFEEDFHS--QHQPNHKYDVSFSFNRVCLKRAHEAVADA 702 (961)
Q Consensus 629 -RP--sLlvGD~VlL~~~g~-~~~~y~G~V~~V~~sd~V~L~f~~~f~~--~~~~~~~~~V~F~lNR~t~rR~h~ALd~l 702 (961)
-| .+..||.|+|...++ ....++|+|++|.. +.|.|.|+..... .......|.|.+..|+++|+||++|++.+
T Consensus 75 ~l~~~~~~~Gd~v~~~~~~~~~~~~~~g~v~~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~l 153 (646)
T 4b3f_X 75 ALPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQ-KSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIAL 153 (646)
T ss_dssp CCCCCCCCTTCEEEEEETTTTSCCCEEEEEEEEET-TEEEEECC-------CCCSSCCEEEEEECCHHHHHHHHHHHHHH
T ss_pred CCccCCCCCCCEEEEEecCCCCCceEEEEEEEEeC-CEEEEEECCccccccccCCCCcEEEEEeccchHHHHHHHHHHHh
Confidence 22 588999999997654 34679999999999 9999999875332 22345679999999999999999999988
Q ss_pred hh------hhhccccCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHH
Q 002130 703 SD------SLFRNYLFPDCASRKSIPYPSLCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREA 776 (961)
Q Consensus 703 ~~------~ll~~iLFP~~~~~r~ip~~~~~~~~n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVea 776 (961)
.. ..+.++||+........ ......|.+..||++|++||..+|... +++||+|||||||| +||+++
T Consensus 154 ~~~~~~~~~~l~~~l~~~~~p~~~~-~~~~~~~~~~~LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT-----~ti~~~ 225 (646)
T 4b3f_X 154 KKYHSGPASSLIEVLFGRSAPSPAS-EIHPLTFFNTCLDTSQKEAVLFALSQK--ELAIIHGPPGTGKT-----TTVVEI 225 (646)
T ss_dssp HTCCSSTTHHHHHHHTTSSCCCCCC-CCCCCCCSSTTCCHHHHHHHHHHHHCS--SEEEEECCTTSCHH-----HHHHHH
T ss_pred hhcccCchHHHHHHHcCCCCCCCcc-ccCcccccCCCCCHHHHHHHHHHhcCC--CceEEECCCCCCHH-----HHHHHH
Confidence 53 23557788765432211 122345667899999999999999764 37899999999999 999999
Q ss_pred HHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHHHHhhhhc-----------------
Q 002130 777 VLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVE----------------- 839 (961)
Q Consensus 777 IlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~----------------- 839 (961)
|+++++. +.+|||||+||.|||+|++||.. .+.+++|++...|.. +.+..++...
T Consensus 226 I~~l~~~--~~~ILv~a~TN~AvD~i~erL~~--~~~~ilRlG~~~r~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~ 297 (646)
T 4b3f_X 226 ILQAVKQ--GLKVLCCAPSNIAVDNLVERLAL--CKQRILRLGHPARLL----ESIQQHSLDAVLARSDSAQIVADIRKD 297 (646)
T ss_dssp HHHHHHT--TCCEEEEESSHHHHHHHHHHHHH--TTCCEEECSCCSSCC----HHHHTTBHHHHHTTTTCSSTHHHHHHH
T ss_pred HHHHHhC--CCeEEEEcCchHHHHHHHHHHHh--cCCceEEecchhhhh----hhhhhhhHHHHHhhchHHHHHHHHHHH
Confidence 9999986 78999999999999999999986 357899999876532 2222111100
Q ss_pred -cccc------------------------------CCChhhhhccceEEEEeeccchhhhc-cCCCCCCccEEEEecCCC
Q 002130 840 -RECF------------------------------SCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASS 887 (961)
Q Consensus 840 -~~~F------------------------------~~p~~e~L~~~rVVvtT~ssag~L~~-~~~~~g~FdhVIIDEASQ 887 (961)
+..+ .....+.|..++||++||.+++.... ..+...+||+||||||+|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ 377 (646)
T 4b3f_X 298 IDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQ 377 (646)
T ss_dssp HTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGG
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccc
Confidence 0000 00012346788999999998875322 224567899999999999
Q ss_pred CChHHHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHc----------CCccccc
Q 002130 888 ATEPETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL----------TEAYRSC 947 (961)
Q Consensus 888 AtEPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~----------~~~Y~~~ 947 (961)
++||++|+||. ..+++||||||+||+|+|.+..|...||++||||||++ ..+||||
T Consensus 378 ~~e~~~lipL~----~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~L~~qYRmh 443 (646)
T 4b3f_X 378 ALEASCWIPLL----KARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMH 443 (646)
T ss_dssp SCHHHHTTTGG----GSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEECCEESSSC
T ss_pred cchHHHHhhcc----ccceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeeecccccCCc
Confidence 99999999996 45899999999999999999999999999999999975 2679998
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=2.1e-42 Score=402.25 Aligned_cols=357 Identities=21% Similarity=0.262 Sum_probs=250.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-hccccccceEeeehhhhhhcccccccccCccCCCCceEEEEEeCCCCCCCCCCCC
Q 002130 556 LLPSTYKDYFAALLYAEDFYEEKW-SGFQLFNVTLELHKAAIYDKSLKNKNLEESDETDDKLFVAFEIDSVPERRPFLLS 634 (961)
Q Consensus 556 LT~~NYk~rF~~LL~LEEi~~eei-rry~me~v~Lk~~~~~i~~k~L~g~~~g~~~~~~G~~fl~LeVpgLaE~RPsLlv 634 (961)
-+..+|.++|..||.+|+.+...+ ....+.++.+.+.. ..+|...+.|.+|+ .+.++.+..
T Consensus 7 ~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~-~~~~~~~~~ 68 (624)
T 2gk6_A 7 EDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDL-----------------GLNKKRIAYFTLPK-TDSDMRLMQ 68 (624)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECEEEEE-----------------CTTSCEEEEEECC--------CCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhhccCceEEeee-----------------cCCCceEEEEEecc-cccCCcCCC
Confidence 367999999999999998654322 22334556665521 11355677788887 677789999
Q ss_pred CCEEEEEECCCC--ceeEEEEEEEEec--ccEEEEEECCCcccCCCCCCcEEEEEeeChhHHHHHHHHHHHHhhh-----
Q 002130 635 RDFVYAQRSGGK--SKKFQGFLYRVVK--WTTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDS----- 705 (961)
Q Consensus 635 GD~VlL~~~g~~--~~~y~G~V~~V~~--sd~V~L~f~~~f~~~~~~~~~~~V~F~lNR~t~rR~h~ALd~l~~~----- 705 (961)
||.|+|+..+.. ...+.|+|+++.. .++|.|.++............|.|+|.+|+++++||++||+.+...
T Consensus 69 Gd~v~l~~~~~~~~~~~~~g~v~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~~~~~~ 148 (624)
T 2gk6_A 69 GDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS 148 (624)
T ss_dssp TCEEEEEECSSSSCCCEEEEEEEECSCSSCSEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTSBC
T ss_pred CCEEEEEECCCCCCCcEEEEEEEEecCCCCCEEEEEEccCCCCccccccceEEEEEeCCchHHHHHHHHHHHHhccccch
Confidence 999999976543 3458899999964 2689999965422221234579999999999999999999988532
Q ss_pred -hhccccCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 706 -LFRNYLFPDCASRKSIPYPSLCPY---SNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 706 -ll~~iLFP~~~~~r~ip~~~~~~~---~n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.+.++................| ....||++|++||..++.. +.++|+|||||||| +|++++|.+++
T Consensus 149 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ln~~Q~~av~~~l~~---~~~li~GppGTGKT-----~~~~~~i~~l~ 220 (624)
T 2gk6_A 149 GYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR---PLSLIQGPPGTGKT-----VTSATIVYHLA 220 (624)
T ss_dssp SHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTC---SEEEEECCTTSCHH-----HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCccccccccCcccccccccCCCCHHHHHHHHHHhcC---CCeEEECCCCCCHH-----HHHHHHHHHHH
Confidence 122233332221101110001112 2357999999999999864 36899999999999 99999999887
Q ss_pred HhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEeccccccccc-------CccH---------HHHHhhhhcc-----
Q 002130 782 RRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREAD-------GVSD---------EIFQVSLVER----- 840 (961)
Q Consensus 782 k~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~-------~V~~---------~I~~y~~~~~----- 840 (961)
+. .+.+||+||+||.|||+|+++|.+. +.+++|++...|+.. .++. ++..+.....
T Consensus 221 ~~-~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~ 297 (624)
T 2gk6_A 221 RQ-GNGPVLVCAPSNIAVDQLTEKIHQT--GLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGEL 297 (624)
T ss_dssp TS-SSCCEEEEESSHHHHHHHHHHHHTT--TCCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----C
T ss_pred Hc-CCCeEEEEeCcHHHHHHHHHHHHhc--CCeEEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 63 5789999999999999999999863 467999998765311 1111 1111111100
Q ss_pred -----cccCC----ChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEe
Q 002130 841 -----ECFSC----PPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTG 911 (961)
Q Consensus 841 -----~~F~~----p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaG 911 (961)
..|.. ...+.|..++||++||.+++... +....|||||||||+|++||++|+|+.. ..+++||||
T Consensus 298 ~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~---l~~~~fd~viIDEAsQ~~e~~~li~l~~---~~~~~ilvG 371 (624)
T 2gk6_A 298 SSADEKRYRALKRTAERELLMNADVICCTCVGAGDPR---LAKMQFRSILIDESTQATEPECMVPVVL---GAKQLILVG 371 (624)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGG---GTTCCCSEEEETTGGGSCHHHHHHHHTT---TBSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcchh---hhcCCCCEEEEecccccCcHHHHHHHHh---cCCeEEEec
Confidence 01100 11345788999999999887432 3456899999999999999999999972 358999999
Q ss_pred CCCCCCccccChHHHhcCCChhHHHHHHcC--------Cccccc
Q 002130 912 APHNSPSRVRSDIARKNGLKMSYFERLCLT--------EAYRSC 947 (961)
Q Consensus 912 DpkQLpPvV~S~~A~k~GL~~SLFERL~~~--------~~Y~~~ 947 (961)
||+||+|+|.+..|.+.||+.||||||+.. .+||+|
T Consensus 372 D~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~~ 415 (624)
T 2gk6_A 372 DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMH 415 (624)
T ss_dssp CTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSSC
T ss_pred ChhccCCeeecHHHHHcCCchhHHHHHHhcCCCcEEehhhhCcC
Confidence 999999999999999999999999999862 678888
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=2e-41 Score=405.42 Aligned_cols=377 Identities=21% Similarity=0.260 Sum_probs=263.1
Q ss_pred ChHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHH-hccccccceEeeehhhhhhcccccccccCccCCCC
Q 002130 536 PKDIEDLIKKDIVPKVLKKPLLPSTYKDYFAALLYAEDFYEEKW-SGFQLFNVTLELHKAAIYDKSLKNKNLEESDETDD 614 (961)
Q Consensus 536 P~~l~~li~~~~~~~~L~~~LT~~NYk~rF~~LL~LEEi~~eei-rry~me~v~Lk~~~~~i~~k~L~g~~~g~~~~~~G 614 (961)
.+++.+....+.+++++..-.+..+|.+.|..||++|+.+...+ ....+.++.+.+.. ..+|
T Consensus 163 ~~~~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e~~~~~~~~~~~~~-----------------~~~~ 225 (800)
T 2wjy_A 163 LEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDL-----------------GLNK 225 (800)
T ss_dssp TTC--------CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCEEEE-----------------CTTC
T ss_pred hhhhhhccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEEEe-----------------cCCC
Confidence 34555555556677788888899999999999999998654322 22334555555421 1145
Q ss_pred ceEEEEEeCCCCCCCCCCCCCCEEEEEECCC--CceeEEEEEEEEec--ccEEEEEECCCcccCCCCCCcEEEEEeeChh
Q 002130 615 KLFVAFEIDSVPERRPFLLSRDFVYAQRSGG--KSKKFQGFLYRVVK--WTTVLVEFEEDFHSQHQPNHKYDVSFSFNRV 690 (961)
Q Consensus 615 ~~fl~LeVpgLaE~RPsLlvGD~VlL~~~g~--~~~~y~G~V~~V~~--sd~V~L~f~~~f~~~~~~~~~~~V~F~lNR~ 690 (961)
.....|.+++ .+.++.+..||.|+|+..+. ....+.|+|+++.. .++|.|+++............+.|+|.++++
T Consensus 226 ~~~~~~~~~~-~~~~~~l~~GD~v~l~~~~~~~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~ 304 (800)
T 2wjy_A 226 KRIAYFTLPK-TDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST 304 (800)
T ss_dssp CEEEEECCCB-CCC--CCCTTCEEEEEECSSSSCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSCEEEEECCCCH
T ss_pred eeEEEEEecc-ccCCCCCCCCCEEEEEECCCCCCCceeEEEEEEEcCCCCCEEEEEEccCCCCccccCCCceEEEeecCC
Confidence 5666788877 67788999999999997654 23458899999965 2578899865432222234569999999999
Q ss_pred HHHHHHHHHHHHhhh------hhccccCCCCCCCCCCCC--CC-CCCCCCCCCCHHHHHHHHHHHhccCCCCceEeccCC
Q 002130 691 CLKRAHEAVADASDS------LFRNYLFPDCASRKSIPY--PS-LCPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLC 761 (961)
Q Consensus 691 t~rR~h~ALd~l~~~------ll~~iLFP~~~~~r~ip~--~~-~~~~~n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPG 761 (961)
+++||+.||+.+... .+.+.++........... .. +.......||++|++||..++.. +.++|+||||
T Consensus 305 ~~~r~~~aL~~~~~~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~~---~~~lI~GppG 381 (800)
T 2wjy_A 305 SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR---PLSLIQGPPG 381 (800)
T ss_dssp HHHHHHHHHHHHHHCTTSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTS---SEEEEECCTT
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHhcCCCCCchhhcccCccccccccccCCCHHHHHHHHHhccC---CeEEEEcCCC
Confidence 999999999987532 122333332211100000 00 11112357999999999999864 3679999999
Q ss_pred CCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEeccccccccc-------CccHHH--
Q 002130 762 NNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREAD-------GVSDEI-- 832 (961)
Q Consensus 762 TGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~-------~V~~~I-- 832 (961)
|||| +|++++|.++++. .+.+||+|||||.|||+|.++|.+. +.+++|++...|+.. +++..+
T Consensus 382 TGKT-----~ti~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~--g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~ 453 (800)
T 2wjy_A 382 TGKT-----VTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT--GLKVVRLCAKSREAIDSPVSFLALHNQIRN 453 (800)
T ss_dssp SCHH-----HHHHHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT--TCCEEECCCGGGGGCCCTTGGGBHHHHHHT
T ss_pred CCHH-----HHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh--CcceEeecccchhhhcchhhhhhHHHHHHc
Confidence 9999 9999999888763 5789999999999999999999863 467999998766421 112111
Q ss_pred -------HHhhhhcc--cc--------cCC----ChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChH
Q 002130 833 -------FQVSLVER--EC--------FSC----PPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEP 891 (961)
Q Consensus 833 -------~~y~~~~~--~~--------F~~----p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEP 891 (961)
..+..... +. |.. ...+.|..++||++||.+++.. .+....||+||||||+|++||
T Consensus 454 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~---~l~~~~fd~viIDEAsQ~~e~ 530 (800)
T 2wjy_A 454 MDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDP---RLAKMQFRSILIDESTQATEP 530 (800)
T ss_dssp CTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGGGCT---TTTTCCCSEEEETTGGGSCHH
T ss_pred CccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhhCCh---hhhcCCCCEEEEECCCCCCcH
Confidence 11111100 00 100 1124577899999999988742 244568999999999999999
Q ss_pred HHHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHcC--------Cccccc
Q 002130 892 ETMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT--------EAYRSC 947 (961)
Q Consensus 892 EaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~~--------~~Y~~~ 947 (961)
++|+|+.. ..+++||||||+||+|+|.+..|.+.||+.||||||+.. .+||++
T Consensus 531 ~~li~l~~---~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~g~~~~~L~~qYRm~ 591 (800)
T 2wjy_A 531 ECMVPVVL---GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMH 591 (800)
T ss_dssp HHHHHHTT---TBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHTTCCCEECCEECSSC
T ss_pred HHHHHHHh---cCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhCCCCceEehhhcCCC
Confidence 99999872 458999999999999999999999999999999999852 678888
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-41 Score=403.12 Aligned_cols=376 Identities=19% Similarity=0.256 Sum_probs=253.1
Q ss_pred hHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhc-cccccceEeeehhhhhhcccccccccCccCCCCc
Q 002130 537 KDIEDLIKKDIVPKVLKKPLLPSTYKDYFAALLYAEDFYEEKWSG-FQLFNVTLELHKAAIYDKSLKNKNLEESDETDDK 615 (961)
Q Consensus 537 ~~l~~li~~~~~~~~L~~~LT~~NYk~rF~~LL~LEEi~~eeirr-y~me~v~Lk~~~~~i~~k~L~g~~~g~~~~~~G~ 615 (961)
+++.+....+.++++...-.+..+|.+.|..||.+|+.+...+.+ ..+.++.+.+.. ..+|.
T Consensus 166 ~d~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 228 (802)
T 2xzl_A 166 NDIDAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVSWSL-----------------ALNNR 228 (802)
T ss_dssp ------------CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHCCC--CCBCEEEEE-----------------CTTSC
T ss_pred hhhhcccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhHhhccCceEeeec-----------------cCCCe
Confidence 444443334445677777789999999999999999865433333 344556665521 12456
Q ss_pred eEEEEEeCCCCCCCCCCCCCCEEEEEECCCC--ceeEEEEEEEEec--ccEEEEEECCCcccCC-CCCCcEEEEEeeChh
Q 002130 616 LFVAFEIDSVPERRPFLLSRDFVYAQRSGGK--SKKFQGFLYRVVK--WTTVLVEFEEDFHSQH-QPNHKYDVSFSFNRV 690 (961)
Q Consensus 616 ~fl~LeVpgLaE~RPsLlvGD~VlL~~~g~~--~~~y~G~V~~V~~--sd~V~L~f~~~f~~~~-~~~~~~~V~F~lNR~ 690 (961)
.++.|.++++.+.++.+..||.|+++..+.. ...+.|+|+++.. .++|.|+++....... .....|.|+|.+|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~GD~v~l~~~~~~~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~ 308 (802)
T 2xzl_A 229 HLASFTLSTFESNELKVAIGDEMILWYSGMQHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGT 308 (802)
T ss_dssp EEEEEC---------CCCTTCEEEEEECSSSSSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSSEEEEECCCCH
T ss_pred EEEEEEecccccCCCCCCCCCEEEEEECCCCCCceeEEEEEEEECCCCCCEEEEEEeCCCCCCccccCCCeEEEEEecCc
Confidence 7888999998888889999999999976542 3458899999974 2679999975432211 124459999999999
Q ss_pred HHHHHHHHHHHHhhh------hhccccCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHhccCCCCceEeccCC
Q 002130 691 CLKRAHEAVADASDS------LFRNYLFPDCASRKSIPYPSLCPY---SNYKLDSDSNSAVHQILSFEGQSPYLLEGPLC 761 (961)
Q Consensus 691 t~rR~h~ALd~l~~~------ll~~iLFP~~~~~r~ip~~~~~~~---~n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPG 761 (961)
+++||++||+.+... .+.+.++................| ....||++|++||..++.. ++++|+||||
T Consensus 309 ~~~r~~~AL~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~~---~~~lI~GppG 385 (802)
T 2xzl_A 309 SYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQR---PLSLIQGPPG 385 (802)
T ss_dssp HHHHHHHHHHHHHHCTTSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTTC---SEEEEECSTT
T ss_pred hHHHHHHHHHHHHhccccchhHHHHHhcCCccccccccccCcccccccccccCCHHHHHHHHHHhcC---CCEEEECCCC
Confidence 999999999988521 122233332211100000000111 2357999999999999864 3689999999
Q ss_pred CCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccc-------cCccHHHH-
Q 002130 762 NNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREA-------DGVSDEIF- 833 (961)
Q Consensus 762 TGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~-------~~V~~~I~- 833 (961)
|||| +|++++|.++++. .+.+|||||+||.|||+|++||.+. +.+++|++...|+. ..++..+.
T Consensus 386 TGKT-----~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~--g~~ilR~g~~~r~~i~~~~~~~tl~~~~~~ 457 (802)
T 2xzl_A 386 TGKT-----VTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL--GLKVVRLTAKSREDVESSVSNLALHNLVGR 457 (802)
T ss_dssp SSHH-----HHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT--TCCEEECCCGGGTTSCCTTGGGBHHHHHHT
T ss_pred CCHH-----HHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh--CccEEeecccchhhhcchhhhhhHHHHHHh
Confidence 9999 9999999988874 4789999999999999999999873 46799998866531 01111111
Q ss_pred -------Hhhhhc---c-------cccC----CChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHH
Q 002130 834 -------QVSLVE---R-------ECFS----CPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPE 892 (961)
Q Consensus 834 -------~y~~~~---~-------~~F~----~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPE 892 (961)
.+.... + ..|. ....+.|..++||++||.+++.. .+.. +||+||||||+|++||+
T Consensus 458 ~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~---~L~~-~fd~viIDEA~q~~e~~ 533 (802)
T 2xzl_A 458 GAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDK---RLDT-KFRTVLIDESTQASEPE 533 (802)
T ss_dssp TCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGCT---TCCS-CCSEEEETTGGGSCHHH
T ss_pred hcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcChH---HHhc-cCCEEEEECccccchHH
Confidence 110000 0 0010 01134577899999999988632 2333 89999999999999999
Q ss_pred HHHHHhccccCCCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHcC--------Cccccc
Q 002130 893 TMIVLGNLANENTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCLT--------EAYRSC 947 (961)
Q Consensus 893 aLIPLa~LA~~~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~~--------~~Y~~~ 947 (961)
+|+|+.. ..+++||||||+||+|++.+..|.+.|++.||||||+.. .+||++
T Consensus 534 ~li~l~~---~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~~~~~~~L~~qYRm~ 593 (802)
T 2xzl_A 534 CLIPIVK---GAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMN 593 (802)
T ss_dssp HHHHHTT---TBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHTTCCCEECCEECSSC
T ss_pred HHHHHHh---CCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhcCCCceEeeeecCCC
Confidence 9999862 458999999999999999999999999999999999852 678888
No 5
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.68 E-value=1.7e-16 Score=184.87 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
++.|+.|+..++... .++|+|+|||||| ++++.++..+.+. ..+.+|++||||+.||+.|.+.+......
T Consensus 151 ~~~Q~~Ai~~~l~~~---~~vi~G~pGTGKT-----t~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~ 222 (608)
T 1w36_D 151 INWQKVAAAVALTRR---ISVISGGPGTGKT-----TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ 222 (608)
T ss_dssp CCHHHHHHHHHHTBS---EEEEECCTTSTHH-----HHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHhcCC---CEEEEeCCCCCHH-----HHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhc
Confidence 789999999999654 6899999999999 8888777766543 34679999999999999999887642110
Q ss_pred CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHH
Q 002130 813 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPE 892 (961)
Q Consensus 813 ~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPE 892 (961)
. .+....+ ..++.. ... -++++..+.... .+........++|+||||||++..++
T Consensus 223 l---~l~~~~~--~~~~~~--------~~T----------ih~ll~~~~~~~-~~~~~~~~~l~~d~lIIDEAsml~~~- 277 (608)
T 1w36_D 223 L---PLTDEQK--KRIPED--------AST----------LHRLLGAQPGSQ-RLRHHAGNPLHLDVLVVDEASMIDLP- 277 (608)
T ss_dssp S---SCCSCCC--CSCSCC--------CBT----------TTSCC------------CTTSCCSCSEEEECSGGGCBHH-
T ss_pred C---CCCHHHH--hccchh--------hhh----------hHhhhccCCCch-HHHhccCCCCCCCEEEEechhhCCHH-
Confidence 0 0100000 000000 000 001111111000 01111112347999999999977655
Q ss_pred HHHHHhccccCCCeEEEEeCCCCCCccccCh----HH--HhcCCChhHHHHHHc
Q 002130 893 TMIVLGNLANENTRVIVTGAPHNSPSRVRSD----IA--RKNGLKMSYFERLCL 940 (961)
Q Consensus 893 aLIPLa~LA~~~trVVLaGDpkQLpPvV~S~----~A--~k~GL~~SLFERL~~ 940 (961)
.+--|......+.++||+||++||+||.... .. .+.|+..++|++|..
T Consensus 278 ~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~ 331 (608)
T 1w36_D 278 MMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 (608)
T ss_dssp HHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHH
Confidence 2333322335678999999999999997653 22 246899999999864
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.67 E-value=4.5e-16 Score=180.72 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=95.4
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
...||++|++||..++.. ..++|.|||||||| +++..++..+.. .+.+|++||||+.||+.|.+++..
T Consensus 187 ~~~L~~~Q~~Av~~~~~~---~~~~I~G~pGTGKT-----t~i~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~~~-- 254 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGH---RLVVLTGGPGTGKS-----TTTKAVADLAES--LGLEVGLCAPTGKAARRLGEVTGR-- 254 (574)
T ss_dssp TTTCCHHHHHHHHHHTTC---SEEEEECCTTSCHH-----HHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHTS--
T ss_pred cCCCCHHHHHHHHHHHhC---CEEEEEcCCCCCHH-----HHHHHHHHHHHh--cCCeEEEecCcHHHHHHhHhhhcc--
Confidence 568999999999999864 36899999999999 777666655444 478999999999999999887731
Q ss_pred CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCCh
Q 002130 811 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 811 ~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtE 890 (961)
. ..+++ .+.......| .........+|+||||||++...
T Consensus 255 ~-------------a~Tih----~ll~~~~~~~------------------------~~~~~~~~~~dvlIIDEasml~~ 293 (574)
T 3e1s_A 255 T-------------ASTVH----RLLGYGPQGF------------------------RHNHLEPAPYDLLIVDEVSMMGD 293 (574)
T ss_dssp C-------------EEEHH----HHTTEETTEE------------------------SCSSSSCCSCSEEEECCGGGCCH
T ss_pred c-------------HHHHH----HHHcCCcchh------------------------hhhhcccccCCEEEEcCccCCCH
Confidence 0 00111 1110000000 00111234799999999987655
Q ss_pred HHHHHHHhccccCCCeEEEEeCCCCCCccccCh
Q 002130 891 PETMIVLGNLANENTRVIVTGAPHNSPSRVRSD 923 (961)
Q Consensus 891 PEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~ 923 (961)
. .+--|......++++||+||+.||+|+....
T Consensus 294 ~-~~~~Ll~~~~~~~~lilvGD~~QL~~v~~g~ 325 (574)
T 3e1s_A 294 A-LMLSLLAAVPPGARVLLVGDTDQLPPVDAGL 325 (574)
T ss_dssp H-HHHHHHTTSCTTCEEEEEECTTSCCCSSSCC
T ss_pred H-HHHHHHHhCcCCCEEEEEecccccCCccCCc
Confidence 4 4444443445678999999999999987543
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.63 E-value=8.7e-16 Score=172.35 Aligned_cols=149 Identities=10% Similarity=0.099 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..||++|++||..++.. .+..+++|.|+|||||| +++..++..+... ...+|+++|+||.||++|.+++..
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT-----~ll~~~~~~l~~~-~~~~il~~a~T~~Aa~~l~~~~~~- 96 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGAT-----TLTKFIIEALIST-GETGIILAAPTHAAKKILSKLSGK- 96 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHH-----HHHHHHHHHHHHT-TCCCEEEEESSHHHHHHHHHHHSS-
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHH-----HHHHHHHHHHHhc-CCceEEEecCcHHHHHHHHhhhcc-
Confidence 57999999999998765 12238999999999999 7887777776664 345899999999999999998831
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
. ..+++ .++......+ .....+.. ........|++||||||++.
T Consensus 97 -~-------------~~T~h----~~~~~~~~~~--------~~~~~~~~---------~~~~~~~~~~~iiiDE~~~~- 140 (459)
T 3upu_A 97 -E-------------ASTIH----SILKINPVTY--------EENVLFEQ---------KEVPDLAKCRVLICDEVSMY- 140 (459)
T ss_dssp -C-------------EEEHH----HHHTEEEEEC--------SSCEEEEE---------CSCCCCSSCSEEEESCGGGC-
T ss_pred -c-------------hhhHH----HHhccCcccc--------cccchhcc---------cccccccCCCEEEEECchhC-
Confidence 0 01111 1111100000 00000000 00112246999999999764
Q ss_pred hHHHHHHHhccccCCCeEEEEeCCCCCCccccCh
Q 002130 890 EPETMIVLGNLANENTRVIVTGAPHNSPSRVRSD 923 (961)
Q Consensus 890 EPEaLIPLa~LA~~~trVVLaGDpkQLpPvV~S~ 923 (961)
.++.+-.|..+...+.++|++||+.||+|+....
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~ 174 (459)
T 3upu_A 141 DRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGE 174 (459)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTS
T ss_pred CHHHHHHHHHhccCCCEEEEECCHHHcCCccCCc
Confidence 4555555554555678999999999999998753
No 8
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.53 E-value=2.1e-14 Score=165.26 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC--CCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~--p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..||++|++||... .++++|+|+|||||| +||++.|.++++.. +..+||++|+||.||+++.+||.+.
T Consensus 8 ~~Ln~~Q~~av~~~-----~~~~lV~a~aGsGKT-----~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAAP-----RSNLLVLAGAGSGKT-----RVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTCC-----SSCEEEEECTTSCHH-----HHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhCC-----CCCEEEEECCCCCHH-----HHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 47999999999732 357899999999999 99999999998753 3479999999999999999999875
Q ss_pred C
Q 002130 810 I 810 (961)
Q Consensus 810 l 810 (961)
+
T Consensus 78 ~ 78 (647)
T 3lfu_A 78 M 78 (647)
T ss_dssp H
T ss_pred h
Confidence 4
No 9
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.32 E-value=1e-12 Score=153.59 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
.||++|++||... .++++|.|+|||||| +||++.|.+++.. .+..+||++|+||.||+++.+||.+.+
T Consensus 2 ~L~~~Q~~av~~~-----~~~~lV~AgaGSGKT-----~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV-----TGPCLVLAGAGSGKT-----RVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHCC-----SSEEEECCCTTSCHH-----HHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhCC-----CCCEEEEeCCCCChH-----HHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 5899999999853 347899999999999 9999999998875 245799999999999999999998865
Q ss_pred C
Q 002130 811 P 811 (961)
Q Consensus 811 ~ 811 (961)
+
T Consensus 72 ~ 72 (673)
T 1uaa_A 72 G 72 (673)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.26 E-value=4.7e-12 Score=150.12 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC--CCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS--PKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~--p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..||++|++||... .+|++|.|+|||||| +||++.|.+++... +..+||++|+||.||+++.+|+.+.
T Consensus 10 ~~Ln~~Q~~av~~~-----~g~~lV~AgAGSGKT-----~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT-----EGPLLIMAGAGSGKT-----RVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHCC-----SSCEEEEECTTSCHH-----HHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC-----CCCEEEEEcCCCCHH-----HHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 46999999999852 357899999999999 99999999999742 4579999999999999999999874
Q ss_pred C
Q 002130 810 I 810 (961)
Q Consensus 810 l 810 (961)
+
T Consensus 80 l 80 (724)
T 1pjr_A 80 L 80 (724)
T ss_dssp H
T ss_pred h
Confidence 3
No 11
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.14 E-value=3.7e-11 Score=136.33 Aligned_cols=117 Identities=14% Similarity=0.072 Sum_probs=75.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEI 832 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I 832 (961)
..+|.|+|||||| +.|.+.+ . ..++||+|||+.|++.|.+++.+. +. .......+
T Consensus 163 v~~I~G~aGsGKT-----t~I~~~~----~---~~~~lVlTpT~~aa~~l~~kl~~~--~~----~~~~~~~V------- 217 (446)
T 3vkw_A 163 VVLVDGVPGCGKT-----KEILSRV----N---FEEDLILVPGRQAAEMIRRRANAS--GI----IVATKDNV------- 217 (446)
T ss_dssp EEEEEECTTSCHH-----HHHHHHC----C---TTTCEEEESCHHHHHHHHHHHTTT--SC----CCCCTTTE-------
T ss_pred EEEEEcCCCCCHH-----HHHHHHh----c---cCCeEEEeCCHHHHHHHHHHhhhc--Cc----cccccceE-------
Confidence 4689999999999 6665543 2 257899999999999999999531 00 00000001
Q ss_pred HHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeC
Q 002130 833 FQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 833 ~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGD 912 (961)
.|..++- +.........+++||||||+++ .+..|..|..+. +.+++||+||
T Consensus 218 --------------------------~T~dsfL-~~~~~~~~~~~d~liiDE~sm~-~~~~l~~l~~~~-~~~~vilvGD 268 (446)
T 3vkw_A 218 --------------------------RTVDSFL-MNYGKGARCQFKRLFIDEGLML-HTGCVNFLVEMS-LCDIAYVYGD 268 (446)
T ss_dssp --------------------------EEHHHHH-HTTTSSCCCCCSEEEEETGGGS-CHHHHHHHHHHT-TCSEEEEEEC
T ss_pred --------------------------EEeHHhh-cCCCCCCCCcCCEEEEeCcccC-CHHHHHHHHHhC-CCCEEEEecC
Confidence 1111110 0011112235999999999865 555554444343 4599999999
Q ss_pred CCCCCccccCh
Q 002130 913 PHNSPSRVRSD 923 (961)
Q Consensus 913 pkQLpPvV~S~ 923 (961)
++||+++-+.+
T Consensus 269 ~~Qlp~v~~~~ 279 (446)
T 3vkw_A 269 TQQIPYINRVT 279 (446)
T ss_dssp TTSCCCCCCST
T ss_pred cccccCcccCC
Confidence 99999998764
No 12
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.00 E-value=1.2e-09 Score=107.38 Aligned_cols=154 Identities=11% Similarity=0.021 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh----CCCCeEEEEecchHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----SPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~----~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
..+++.|++|+..++.+. -++|.+|.|+||| .+.+..+++.+.. ..+.++||++|+...++.+.+++.
T Consensus 22 ~~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT-----~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 93 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGK---DLIGQARTGTGKT-----LAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELT 93 (207)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHH-----HHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCC---CEEEECCCCChHH-----HHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHH
Confidence 368999999999999865 3799999999999 6655555554432 246799999999999999999998
Q ss_pred hhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-ccCCCCCCccEEEEecCC
Q 002130 808 KDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 808 ~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~~~~~g~FdhVIIDEAS 886 (961)
+.....++..+.... ...... ......++|+|+|......+. ...+....+++||||||.
T Consensus 94 ~~~~~~~~~~~~~~~----~~~~~~---------------~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 94 AVAPHLKVVAVYGGT----GYGKQK---------------EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp HHCTTSCEEEECSSS----CSHHHH---------------HHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred HHhhcceEEEEECCC----ChHHHH---------------HHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 755443333222110 000110 011245789999987654322 223445679999999997
Q ss_pred CCChH---HHHHHHhccccCCCeEEEEeC
Q 002130 887 SATEP---ETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 887 QAtEP---EaLIPLa~LA~~~trVVLaGD 912 (961)
.+.+. ..+.-+........++|+..-
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 183 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSA 183 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECS
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEE
Confidence 54332 112222212234556666554
No 13
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.99 E-value=6.3e-10 Score=109.22 Aligned_cols=133 Identities=9% Similarity=-0.002 Sum_probs=81.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh----CCCCeEEEEecchHHHHH-HHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----SPKSRILICAPWNRTCDK-LMECL 806 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~----~p~~RILVcAPSNsAaD~-LleRL 806 (961)
..|++.|++|+..++.+. -++|.||+|+||| .+.+..+.+++.. ..+.++||++|+...++. +.+.+
T Consensus 32 ~~l~~~Q~~~i~~~~~~~---~~li~~~tGsGKT-----~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGK---NIIICLPTGSGKT-----RVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp CCCCHHHHHHHHHHHTTC---CEEEECSCHHHHH-----HHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTH
T ss_pred CCchHHHHHHHHHHhcCC---CEEEEcCCCCCHH-----HHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHH
Confidence 478999999999999754 4799999999999 6666666665543 236799999999999988 44444
Q ss_pred HhhCC-CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccC-------CCCCCcc
Q 002130 807 MKDIP-ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-------ITAGHFS 878 (961)
Q Consensus 807 ~~~l~-~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~-------~~~g~Fd 878 (961)
..... ...+..+.... ............++|+|+|........... +....|+
T Consensus 104 ~~~~~~~~~v~~~~g~~-------------------~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~ 164 (216)
T 3b6e_A 104 QPFLKKWYRVIGLSGDT-------------------QLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFS 164 (216)
T ss_dssp HHHHTTTSCEEECCC----------------------CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCS
T ss_pred HHHhccCceEEEEeCCc-------------------ccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhccc
Confidence 43221 12222222110 000011122346789999987765432221 3345789
Q ss_pred EEEEecCCCCChH
Q 002130 879 HIFLIDASSATEP 891 (961)
Q Consensus 879 hVIIDEASQAtEP 891 (961)
+||||||..+.+.
T Consensus 165 ~iIiDEah~~~~~ 177 (216)
T 3b6e_A 165 LIIIDECHHTNKE 177 (216)
T ss_dssp EEEETTC------
T ss_pred EEEEECchhhccC
Confidence 9999999877543
No 14
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.98 E-value=1.5e-09 Score=108.35 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH-HhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl-k~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..+++.|++|+..++.+. -++|.+|.|+||| .+.+-.+++.+ ....+.++||++|+...++.+.+++.+..
T Consensus 35 ~~~~~~Q~~~i~~~~~~~---~~lv~~pTGsGKT-----~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKT-----GTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHH-----HHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhcCC---CEEEECCCCCcHH-----HHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 358999999999999764 3799999999999 55443444333 33346699999999999999999887643
Q ss_pred C--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-ccCCCCCCccEEEEecCCC
Q 002130 811 P--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDASS 887 (961)
Q Consensus 811 ~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~~~~~g~FdhVIIDEASQ 887 (961)
. +..+..+..... . ....+.+.+++|||+|........ ...+....+++||||||..
T Consensus 107 ~~~~~~~~~~~g~~~----~----------------~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 107 FHMDIKVHACIGGTS----F----------------VEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp TTSCCCEEEECC------------------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred cccCceEEEEeCCcc----h----------------HHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 2 122222221100 0 001122345889999987654322 2233456799999999975
Q ss_pred CChH---HHHHHHhccccCCCeEEEEeC
Q 002130 888 ATEP---ETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 888 AtEP---EaLIPLa~LA~~~trVVLaGD 912 (961)
+.+. ..+.-+........++|+..-
T Consensus 167 ~~~~~~~~~l~~i~~~~~~~~~~i~lSA 194 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSA 194 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEES
T ss_pred HhhhhhHHHHHHHHHhCCccCeEEEEEe
Confidence 4332 223333322334556666654
No 15
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.94 E-value=2.4e-09 Score=108.16 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-----CCCCeEEEEecchHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-----SPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-----~p~~RILVcAPSNsAaD~LleRL 806 (961)
..+++.|++|+..++.++ -++|.+|.|+||| .+..-.+++.+.. ..+.++||++|+...++.+.+++
T Consensus 46 ~~~~~~Q~~~i~~~~~~~---~~li~a~TGsGKT-----~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 117 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGK---DVLGAAKTGSGKT-----LAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVL 117 (236)
T ss_dssp CBCCHHHHHHHHHHHTTC---CEEEECCTTSCHH-----HHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEeCCCCcHH-----HHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHH
Confidence 468999999999999765 3799999999999 5544444444322 24679999999999999999998
Q ss_pred HhhCCC--CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc--CCCCCCccEEEE
Q 002130 807 MKDIPA--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ--GITAGHFSHIFL 882 (961)
Q Consensus 807 ~~~l~~--~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~--~~~~g~FdhVII 882 (961)
.+.... ..+..+.... .... ..+.+.+++|||+|.......... .+....+++|||
T Consensus 118 ~~~~~~~~~~~~~~~g~~----~~~~----------------~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 118 RKVGKNHDFSAGLIIGGK----DLKH----------------EAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp HHHTTTSSCCEEEECCC------CHH----------------HHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred HHHhCCCCeeEEEEECCC----CHHH----------------HHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 864322 1221111100 0000 112345679999998765433221 244567999999
Q ss_pred ecCCCCChH---HHHHHHhccccCCCeEEEEeC
Q 002130 883 IDASSATEP---ETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 883 DEASQAtEP---EaLIPLa~LA~~~trVVLaGD 912 (961)
|||..+.+. ..+.-+........++|+..-
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 210 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSA 210 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEES
T ss_pred eChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEe
Confidence 999765432 223333222234556666553
No 16
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.92 E-value=6.7e-09 Score=103.59 Aligned_cols=152 Identities=13% Similarity=0.022 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-PKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
.+++.|++|+..++.+. -++|.+|.|+||| .+....+++.+... .+.++||++|+...++++.+++.+...
T Consensus 36 ~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 107 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGM---DVLCQAKSGMGKT-----AVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSK 107 (220)
T ss_dssp CCCHHHHHHHHHHHTTC---CEEEECCTTSCHH-----HHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCchh-----hhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 58999999999999864 3799999999999 65555555544432 245999999999999999988876432
Q ss_pred ---CCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhh-ccCCCCCCccEEEEecC
Q 002130 812 ---ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDA 885 (961)
Q Consensus 812 ---~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~-~~~~~~g~FdhVIIDEA 885 (961)
+.++..+... ...... .+.+ ...+|+|+|......+. ...+....|++||||||
T Consensus 108 ~~~~~~v~~~~g~------~~~~~~--------------~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 108 YMPNVKVAVFFGG------LSIKKD--------------EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp TSTTCCEEEESCC------SCHHHH--------------HHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred hCCCceEEEEeCC------CChHHH--------------HHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 2333322211 110000 0111 23589999987654432 22334567999999999
Q ss_pred CCCCh-H---HHHHHHhccccCCCeEEEEeC
Q 002130 886 SSATE-P---ETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 886 SQAtE-P---EaLIPLa~LA~~~trVVLaGD 912 (961)
..+.+ . ..+.-+........++|+..-
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 198 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSA 198 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEES
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEe
Confidence 76654 1 222223222334567776654
No 17
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.90 E-value=5.7e-09 Score=108.94 Aligned_cols=128 Identities=11% Similarity=0.008 Sum_probs=87.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|++.|++|+..++... -.+|.+|.|+||| .+.+.++.+.+.. .+.++|+++|+...+++..+++.+...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~---~~ll~~~tGsGKT-----~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNR---RRILNLPTSAGRS-----LIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCCHHHHHHHHHHHHHS---EEEECCCTTSCHH-----HHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred cCccHHHHHHHHHHHhcC---CeEEEcCCCCCcH-----HHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 468999999999999763 2489999999999 6666666665554 345999999999999999999986422
Q ss_pred C--CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 812 A--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 812 ~--~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
. ..+..+...... ........+|+|+|....... .......|++||||||..+.
T Consensus 183 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~I~v~T~~~l~~~--~~~~~~~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 183 FSHAMIKKIGGGASK----------------------DDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLAT 238 (282)
T ss_dssp CCGGGEEECSTTCSS----------------------TTCCCTTCSEEEECHHHHTTS--CGGGGGGEEEEEEETGGGCC
T ss_pred cccceEEEEeCCCcc----------------------hhhhccCCcEEEEchHHHHhh--HHHHHhhCCEEEEECCccCC
Confidence 1 122222211000 002235678999998654321 11123579999999998887
Q ss_pred hHH
Q 002130 890 EPE 892 (961)
Q Consensus 890 EPE 892 (961)
.+.
T Consensus 239 ~~~ 241 (282)
T 1rif_A 239 GKS 241 (282)
T ss_dssp HHH
T ss_pred ccc
Confidence 663
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.89 E-value=4.1e-09 Score=110.58 Aligned_cols=153 Identities=8% Similarity=0.042 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..+++.|++|+..++.+.. -++|.+|.|+||| .+.+..+++.+....+.++||++|+...++++.+++.+...
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~--~~l~~~~TGsGKT-----~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 99 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEY--NIVAQARTGSGKT-----ASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKG 99 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCS--EEEEECCSSSSHH-----HHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCC--CEEEECCCCChHH-----HHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhC
Confidence 3689999999999997632 4689999999999 66666666666555678999999999999999999987432
Q ss_pred C--CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhc-cCCCCCCccEEEEecCCCC
Q 002130 812 A--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 812 ~--~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~-~~~~~g~FdhVIIDEASQA 888 (961)
. ..+..+.... ...+ ....+.+++|+++|......+.. ..+....|++||||||...
T Consensus 100 ~~~~~v~~~~~~~----~~~~----------------~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~ 159 (367)
T 1hv8_A 100 NKNLKIAKIYGGK----AIYP----------------QIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM 159 (367)
T ss_dssp SSCCCEEEECTTS----CHHH----------------HHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHH
T ss_pred CCCceEEEEECCc----chHH----------------HHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHh
Confidence 2 2222221110 0000 11234567899999876644322 2234467999999999765
Q ss_pred ChHH---HHHHHhccccCCCeEEEEe
Q 002130 889 TEPE---TMIVLGNLANENTRVIVTG 911 (961)
Q Consensus 889 tEPE---aLIPLa~LA~~~trVVLaG 911 (961)
.+.. .+.-+........++|+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~S 185 (367)
T 1hv8_A 160 LNMGFIKDVEKILNACNKDKRILLFS 185 (367)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEEC
T ss_pred hhhchHHHHHHHHHhCCCCceEEEEe
Confidence 4332 2222222223455666543
No 19
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.89 E-value=1.1e-08 Score=102.68 Aligned_cols=154 Identities=9% Similarity=-0.055 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-------CCCCeEEEEecchHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-------SPKSRILICAPWNRTCDKLME 804 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-------~p~~RILVcAPSNsAaD~Lle 804 (961)
..+++.|++|+..++.+. -++|.+|.|+||| .+..-.+++.+.. ..+.++||.+|+...|+.+.+
T Consensus 41 ~~~~~~Q~~~i~~~~~~~---~~l~~apTGsGKT-----~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 112 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGI---DLIVVAQTGTGKT-----LSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEA 112 (228)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHH-----HHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHH-----HHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHH
Confidence 368999999999998765 3699999999999 4433333333321 257789999999999999999
Q ss_pred HHHhhC-CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-ccCCCCCCccEEEE
Q 002130 805 CLMKDI-PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFL 882 (961)
Q Consensus 805 RL~~~l-~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~~~~~g~FdhVII 882 (961)
++.+.. .+.....+..... .. ........+.+|||+|......+. ...+...++++|||
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~----~~---------------~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 113 ECSKYSYKGLKSICIYGGRN----RN---------------GQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp HHHHHCCTTCCEEEECC-------------------------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred HHHHhcccCceEEEEECCCC----hH---------------HHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 988742 1222222211100 00 000112245789999986654432 22334457999999
Q ss_pred ecCCCCChH---HHHHHHhccccCCCeEEEEeC
Q 002130 883 IDASSATEP---ETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 883 DEASQAtEP---EaLIPLa~LA~~~trVVLaGD 912 (961)
|||..+.+. ..+.-+........++|+..-
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 206 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSA 206 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEES
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEe
Confidence 999654432 122222222234567776654
No 20
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.83 E-value=1.9e-08 Score=98.96 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH-hCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk-~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..+++.|++|+..++.++ -++|.+|.|+||| .+....+++.+. ...+.++||++|+...++.+.+++.+..
T Consensus 24 ~~~~~~Q~~~i~~~~~~~---~~lv~apTGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 95 (206)
T 1vec_A 24 EKPSPIQEESIPIALSGR---DILARAKNGTGKS-----GAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVS 95 (206)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCSSSTTH-----HHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHccCC---CEEEECCCCCchH-----HHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHH
Confidence 368999999999999774 3799999999999 554444444332 2345689999999999999998887643
Q ss_pred C---CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhc-cCCCCCCccEEEEecCC
Q 002130 811 P---ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDAS 886 (961)
Q Consensus 811 ~---~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~-~~~~~g~FdhVIIDEAS 886 (961)
. +..+..+.... ...++.. .....++|||+|......+.. ..+....+++||||||.
T Consensus 96 ~~~~~~~~~~~~g~~----~~~~~~~---------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 96 KHMGGAKVMATTGGT----NLRDDIM---------------RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp TTSSSCCEEEECSSS----CHHHHHH---------------HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred hhcCCceEEEEeCCc----cHHHHHH---------------hcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 2 22222221110 0111111 111357899999876544332 22344579999999997
Q ss_pred CCChHH---HHHHHhccccCCCeEEEEeC
Q 002130 887 SATEPE---TMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 887 QAtEPE---aLIPLa~LA~~~trVVLaGD 912 (961)
.+.+.. .+.-+........++|+..-
T Consensus 157 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SA 185 (206)
T 1vec_A 157 KLLSQDFVQIMEDIILTLPKNRQILLYSA 185 (206)
T ss_dssp HHTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred HhHhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 655432 22222212223556666554
No 21
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.82 E-value=2.2e-08 Score=103.27 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=91.2
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
...|++.|++|+..++... -.+|.||+|+||| .+.+.++.+ . +.++||++|+...++++.+++.+ +
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT-----~~a~~~~~~---~--~~~~liv~P~~~L~~q~~~~~~~-~ 156 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDK---RGCIVLPTGSGKT-----HVAMAAINE---L--STPTLIVVPTLALAEQWKERLGI-F 156 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTS---EEEEEESSSTTHH-----HHHHHHHHH---S--CSCEEEEESSHHHHHHHHHHHGG-G
T ss_pred CCCcCHHHHHHHHHHHhCC---CEEEEeCCCCCHH-----HHHHHHHHH---c--CCCEEEEeCCHHHHHHHHHHHHh-C
Confidence 3579999999999988764 2799999999999 554444332 2 67999999999999999999876 3
Q ss_pred CCCc-eEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 811 PASE-MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 811 ~~~~-ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
+.. +..+..... ...+|+|+|......... .....|++||||||....
T Consensus 157 -~~~~v~~~~g~~~----------------------------~~~~i~v~T~~~l~~~~~--~~~~~~~llIiDEaH~l~ 205 (237)
T 2fz4_A 157 -GEEYVGEFSGRIK----------------------------ELKPLTVSTYDSAYVNAE--KLGNRFMLLIFDEVHHLP 205 (237)
T ss_dssp -CGGGEEEESSSCB----------------------------CCCSEEEEEHHHHHHTHH--HHTTTCSEEEEECSSCCC
T ss_pred -CCCeEEEEeCCCC----------------------------CcCCEEEEeHHHHHhhHH--HhcccCCEEEEECCccCC
Confidence 222 222221100 245788888765533221 112469999999998876
Q ss_pred hHHHHHHHhccccCCCeEEEEeCCC
Q 002130 890 EPETMIVLGNLANENTRVIVTGAPH 914 (961)
Q Consensus 890 EPEaLIPLa~LA~~~trVVLaGDpk 914 (961)
... +--+..+.....++.|.|=+.
T Consensus 206 ~~~-~~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 206 AES-YVQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp TTT-HHHHHHTCCCSEEEEEEESCC
T ss_pred ChH-HHHHHHhccCCEEEEEecCCC
Confidence 653 333332333445677777554
No 22
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.81 E-value=1.4e-08 Score=103.04 Aligned_cols=135 Identities=15% Similarity=0.160 Sum_probs=85.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR--SPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~--~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..+++.|++|+..++.++ -++|.+|.|+||| .+..-.+++.+.. ..+.++||++|+...|+.+.+++.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT-----~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGR---ELLASAPTGSGKT-----LAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHH-----HHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCcHH-----HHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 358999999999999875 3799999999999 5544444444432 24568999999999999999998874
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc---CCCCCCccEEEEecCC
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ---GITAGHFSHIFLIDAS 886 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~---~~~~g~FdhVIIDEAS 886 (961)
..... +++.. +...... ...+. .....+.+|||+|......+... .+....+++||||||.
T Consensus 122 ~~~~~-~~~~~-------~~~~~~~-----~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah 185 (245)
T 3dkp_A 122 SEGTG-FRIHM-------IHKAAVA-----AKKFG---PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESD 185 (245)
T ss_dssp TTTSC-CCEEC-------CCHHHHH-----HTTTS---TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHH
T ss_pred hcccC-ceEEE-------EecCccH-----HHHhh---hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChH
Confidence 33211 11111 1100000 00010 01124678999997665433322 2344579999999997
Q ss_pred CCCh
Q 002130 887 SATE 890 (961)
Q Consensus 887 QAtE 890 (961)
.+.+
T Consensus 186 ~~~~ 189 (245)
T 3dkp_A 186 KLFE 189 (245)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6544
No 23
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.80 E-value=1.2e-08 Score=103.77 Aligned_cols=151 Identities=10% Similarity=0.080 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
.+++.|++|+..++.+. -++|.+|.|+||| .+.+-.+++.+.. ..+.++||++|+...++.+.+++.+...
T Consensus 52 ~~~~~Q~~ai~~i~~~~---~~li~apTGsGKT-----~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 123 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGY---DVIAQAQSGTGKT-----ATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGD 123 (237)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEECCCSSHHHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHH-----HHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhh
Confidence 58999999999999764 3799999999999 5544445444432 2467999999999999999999876432
Q ss_pred C--CceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhh-ccCCCCCCccEEEEecCC
Q 002130 812 A--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 812 ~--~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~-~~~~~~g~FdhVIIDEAS 886 (961)
. ..+..+.... .... ..+.+ ...+|||+|......+. ...+....+++||||||.
T Consensus 124 ~~~~~~~~~~g~~----~~~~----------------~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 183 (237)
T 3bor_A 124 YMGATCHACIGGT----NVRN----------------EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 183 (237)
T ss_dssp TTTCCEEEECC---------------------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH
T ss_pred hcCceEEEEECCC----chHH----------------HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch
Confidence 1 1222111110 0000 00111 23689999976543322 222344679999999997
Q ss_pred CCChH---HHHHHHhccccCCCeEEEEe
Q 002130 887 SATEP---ETMIVLGNLANENTRVIVTG 911 (961)
Q Consensus 887 QAtEP---EaLIPLa~LA~~~trVVLaG 911 (961)
.+.+. ..+.-+........++|+..
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~S 211 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLS 211 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEC
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEE
Confidence 54332 22222222223445666654
No 24
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.80 E-value=8.5e-09 Score=104.36 Aligned_cols=128 Identities=12% Similarity=0.008 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH-HhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR-RRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl-k~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
.+++.|++|+..++.+. -++|.+|.|+||| .+.+-.+++.+ ....+.++||++|+...++.+.+++.+...
T Consensus 46 ~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT-----~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 117 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGL---DLIVQAKSGTGKT-----CVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGI 117 (230)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHH-----HHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 58999999999998764 3799999999999 55333333333 334567999999999999999999876432
Q ss_pred ---CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhc-cCCCCCCccEEEEecCCC
Q 002130 812 ---ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASS 887 (961)
Q Consensus 812 ---~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~-~~~~~g~FdhVIIDEASQ 887 (961)
+.++..+.. ...... ..+.+.+++|||+|......+.. ..+....+++||||||..
T Consensus 118 ~~~~~~~~~~~g------~~~~~~--------------~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 118 KMEGLECHVFIG------GTPLSQ--------------DKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK 177 (230)
T ss_dssp TSTTCCEEEECT------TSCHHH--------------HHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH
T ss_pred ccCCceEEEEeC------CCCHHH--------------HHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH
Confidence 222222111 111000 01233568999999876644332 223345789999999976
Q ss_pred C
Q 002130 888 A 888 (961)
Q Consensus 888 A 888 (961)
+
T Consensus 178 ~ 178 (230)
T 2oxc_A 178 L 178 (230)
T ss_dssp H
T ss_pred h
Confidence 5
No 25
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.76 E-value=3.3e-08 Score=106.14 Aligned_cols=153 Identities=13% Similarity=-0.030 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|.+.|++|+..++.+ -.+|.+|.|+||| .+.+.++.+.+. ..+.++||++|+...+++..+++.+.+.
T Consensus 8 ~~l~~~Q~~~i~~~~~~----~~ll~~~tG~GKT-----~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~ 77 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET----NCLIVLPTGLGKT-----LIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFN 77 (494)
T ss_dssp HCCCHHHHHHHHHGGGS----CEEEECCTTSCHH-----HHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBC
T ss_pred CCccHHHHHHHHHHhhC----CEEEEcCCCCCHH-----HHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhC
Confidence 36889999999999876 3699999999999 666666666665 3578999999999999999999987542
Q ss_pred --CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhc-cCCCCCCccEEEEecCCCC
Q 002130 812 --ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 812 --~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~-~~~~~g~FdhVIIDEASQA 888 (961)
...+..+... ....-. .....+++|||+|......... ..+....|++||||||..+
T Consensus 78 ~~~~~v~~~~g~------~~~~~~--------------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~ 137 (494)
T 1wp9_A 78 LPPEKIVALTGE------KSPEER--------------SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRA 137 (494)
T ss_dssp SCGGGEEEECSC------SCHHHH--------------HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGC
T ss_pred cchhheEEeeCC------cchhhh--------------hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCccc
Confidence 2233333221 111100 1122467899999877654322 2344568999999999887
Q ss_pred ChHHH---HHHHhc-cccCCCeEEEEeCCC
Q 002130 889 TEPET---MIVLGN-LANENTRVIVTGAPH 914 (961)
Q Consensus 889 tEPEa---LIPLa~-LA~~~trVVLaGDpk 914 (961)
..... ++-+.. .......+.|.|=+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 138 VGNYAYVFIAREYKRQAKNPLVIGLTASPG 167 (494)
T ss_dssp STTCHHHHHHHHHHHHCSSCCEEEEESCSC
T ss_pred CCCCcHHHHHHHHHhcCCCCeEEEEecCCC
Confidence 64322 221111 112345677777654
No 26
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.75 E-value=4.8e-08 Score=104.90 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..+++.|++|+..++.+.+ ++|.+|.|+||| .+....+++.+.. ..+.++||++|+...++.+.+++.+..
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~---~lv~a~TGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 132 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYD---VIAQAQSGTGKT-----ATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALG 132 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCC---EEECCCSCSSSH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHhHHHhCCCC---EEEECCCCCccc-----HHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHh
Confidence 3578999999999998653 799999999999 6655555554433 256799999999999999999887632
Q ss_pred C--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh-hhccCCCCCCccEEEEecCCC
Q 002130 811 P--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHNQGITAGHFSHIFLIDASS 887 (961)
Q Consensus 811 ~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~-L~~~~~~~g~FdhVIIDEASQ 887 (961)
. +..+..+... ......... ......+|||+|...... +....+....|++||||||..
T Consensus 133 ~~~~~~~~~~~~~----~~~~~~~~~--------------~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 133 DYMGASCHACIGG----TNVRAEVQK--------------LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp GGSCCCEEECCCC----TTHHHHHHH--------------HTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH
T ss_pred cccCceEEEEECC----cchHHHHHH--------------HhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH
Confidence 1 1121111110 001111110 011456899999765543 223334456799999999976
Q ss_pred CChH---HHHHHHhccccCCCeEEEEeC
Q 002130 888 ATEP---ETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 888 AtEP---EaLIPLa~LA~~~trVVLaGD 912 (961)
+.+. ..+.-+........++|+..-
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SA 222 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSA 222 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECS
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEE
Confidence 4332 122223222234566666553
No 27
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.75 E-value=4.9e-08 Score=109.36 Aligned_cols=149 Identities=11% Similarity=0.047 Sum_probs=97.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh--
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD-- 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~-- 809 (961)
..|++.|++||..++... -.+|.||.|+||| .+.+.++.+.+.. .+.+|||++|+...+++..+++.+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~---~~ll~~~tGsGKT-----~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNR---RRILNLPTSAGRS-----LIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp ECCCHHHHHHHHHHHHHS---EEEEECCSTTTHH-----HHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHhcC---CcEEEeCCCCCHH-----HHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 378999999999999764 3699999999999 6766677776664 3459999999999999999999763
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
.....+..+...... ..+.....+|||+|....... .......|++||||||....
T Consensus 183 ~~~~~v~~~~~~~~~----------------------~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~~ 238 (510)
T 2oca_A 183 FSHAMIKKIGGGASK----------------------DDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLAT 238 (510)
T ss_dssp SCGGGEEECGGGCCT----------------------TGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGCC
T ss_pred CCccceEEEecCCcc----------------------ccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCCC
Confidence 222233333221100 001225678999998754321 11223479999999998887
Q ss_pred hHHHHHHHhccccCCCeEEEEeCC
Q 002130 890 EPETMIVLGNLANENTRVIVTGAP 913 (961)
Q Consensus 890 EPEaLIPLa~LA~~~trVVLaGDp 913 (961)
......-+..+......+.|.|=+
T Consensus 239 ~~~~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 239 GKSISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp HHHHHHHGGGCTTCCEEEEEESCG
T ss_pred cccHHHHHHhcccCcEEEEEEeCC
Confidence 755333234332233445555554
No 28
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.72 E-value=6.6e-08 Score=103.04 Aligned_cols=130 Identities=13% Similarity=0.013 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
.|.+.|++|+..++.+. -++|.+|.|+||| .+....+++.+.. ..+.++||++|+...++++.+++.+...
T Consensus 30 ~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT-----~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 101 (391)
T 1xti_A 30 HPSEVQHECIPQAILGM---DVLCQAKSGMGKT-----AVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSK 101 (391)
T ss_dssp SCCHHHHHHHHHHTTTC---CEEEECSSCSSHH-----HHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCC---cEEEECCCCCcHH-----HHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHh
Confidence 58999999999998764 3799999999999 5554555544433 2356999999999999999888876432
Q ss_pred ---CCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhh-ccCCCCCCccEEEEecC
Q 002130 812 ---ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDA 885 (961)
Q Consensus 812 ---~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~-~~~~~~g~FdhVIIDEA 885 (961)
+.++..+... ....-. .+.+ ...+|||+|......+. ...+....|++||||||
T Consensus 102 ~~~~~~~~~~~g~------~~~~~~--------------~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 102 YMPNVKVAVFFGG------LSIKKD--------------EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp TCTTCCEEEECTT------SCHHHH--------------HHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred hCCCeEEEEEeCC------CCHHHH--------------HHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 2333322211 110000 0111 23589999987664432 22334568999999999
Q ss_pred CCCCh
Q 002130 886 SSATE 890 (961)
Q Consensus 886 SQAtE 890 (961)
..+.+
T Consensus 162 H~~~~ 166 (391)
T 1xti_A 162 DKMLE 166 (391)
T ss_dssp HHHTS
T ss_pred HHHhh
Confidence 87665
No 29
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.71 E-value=7.3e-08 Score=102.11 Aligned_cols=153 Identities=11% Similarity=0.069 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..+++.|++|+..++.+.+ .-++|.+|.|+||| .+....+++.+.. ..+.++||++|+...++++.+++.+..
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~-~~~lv~a~TGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPP-RNMIAQSQSGTGKT-----AAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSC-CCEEEECCTTSCHH-----HHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEECCCCCcHH-----HHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHh
Confidence 3689999999999997631 24799999999999 5555455444332 356799999999999999999988632
Q ss_pred CCCc--eEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-ccCCCCCCccEEEEecCCC
Q 002130 811 PASE--MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDASS 887 (961)
Q Consensus 811 ~~~~--ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~~~~~g~FdhVIIDEASQ 887 (961)
.... ..-+.. +.+. .....+++|||+|......+. ...+....|++||||||..
T Consensus 100 ~~~~~~~~~~~~--------------------~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 100 KFTKITSQLIVP--------------------DSFE---KNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp TTSCCCEEEEST--------------------TSSC---TTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHH
T ss_pred cccCeeEEEEec--------------------Cchh---hhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhh
Confidence 2111 111100 0000 011246789999987654432 2233455799999999975
Q ss_pred CCh----HHHHHHHhccccCCCeEEEEeCC
Q 002130 888 ATE----PETMIVLGNLANENTRVIVTGAP 913 (961)
Q Consensus 888 AtE----PEaLIPLa~LA~~~trVVLaGDp 913 (961)
..+ -..+.-+........++|+..-.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 186 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSAT 186 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred hcCccccHHHHHHHHHhCCCCcEEEEEEec
Confidence 433 12333333333445677766543
No 30
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.70 E-value=1.7e-08 Score=101.06 Aligned_cols=155 Identities=10% Similarity=0.026 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..+++.|++|+..++.+. -++|.+|.|+||| .+.+-.+++.+.. ..+.++||++|+...++.+.+++.+..
T Consensus 25 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT-----~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 96 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGE---SMVGQSQTGTGKT-----HAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKIT 96 (219)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEECCSSHHHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHH-----HHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 357999999999999875 3699999999999 5544444444332 246799999999999999998887632
Q ss_pred CC------CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhc-cCCCCCCccEEEEe
Q 002130 811 PA------SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLI 883 (961)
Q Consensus 811 ~~------~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~-~~~~~g~FdhVIID 883 (961)
.. ..+..+.. ..... .... ..-.+.+|||+|......+.. ..+....+++||||
T Consensus 97 ~~~~~~~~~~~~~~~g------~~~~~---------~~~~----~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 97 KFCPKDRMIVARCLIG------GTDKQ---------KALE----KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp TTSCGGGCCCEEEECC------CSHHH---------HTTC----CCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred hhcccccceEEEEEeC------CCCHH---------HHHH----HcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 21 11111111 00000 0000 001357899999866544322 22334578999999
Q ss_pred cCCCCChHH---HHHHHhccccCCCeEEEEeCC
Q 002130 884 DASSATEPE---TMIVLGNLANENTRVIVTGAP 913 (961)
Q Consensus 884 EASQAtEPE---aLIPLa~LA~~~trVVLaGDp 913 (961)
||....+.. .+.-+........++++..-.
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT 190 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSAT 190 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecC
Confidence 997544321 122222122234566666544
No 31
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.70 E-value=4.7e-08 Score=101.65 Aligned_cols=130 Identities=10% Similarity=0.029 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-----CCCCeEEEEecchHHHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-----SPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-----~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
.+++.|++|+..++.+++ ++|+||.|+||| .+.+-.+++.+.. ..+.++||.+|+...|.++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~~~~~---~lv~a~TGsGKT-----~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 147 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGRD---LLAAAKTGSGKT-----LAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLK 147 (262)
T ss_dssp BCCHHHHHHHHHHHHTCC---CEECCCTTSCHH-----HHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCc---EEEEccCCCCch-----HHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 589999999999998752 699999999999 5544444444432 246789999999999999999988
Q ss_pred hhCCCC--ceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-c-cCCCCCCccEEEEe
Q 002130 808 KDIPAS--EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-N-QGITAGHFSHIFLI 883 (961)
Q Consensus 808 ~~l~~~--~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~-~~~~~g~FdhVIID 883 (961)
+..... .+..+.... ....... ......+|||+|........ . ..+....+++||||
T Consensus 148 ~~~~~~~~~~~~~~g~~----~~~~~~~---------------~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 148 ELMTHHVHTYGLIMGGS----NRSAEAQ---------------KLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp HHTTTCCSCEEEECSSS----CHHHHHH---------------HHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred HHHhhcCceEEEEECCC----CHHHHHH---------------HhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 743321 111111100 0000000 11134689999975543321 1 12344579999999
Q ss_pred cCCCCC
Q 002130 884 DASSAT 889 (961)
Q Consensus 884 EASQAt 889 (961)
||..+.
T Consensus 209 Eah~l~ 214 (262)
T 3ly5_A 209 EADRIL 214 (262)
T ss_dssp SHHHHH
T ss_pred ChHHHh
Confidence 996543
No 32
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.69 E-value=6.3e-08 Score=99.95 Aligned_cols=132 Identities=10% Similarity=-0.023 Sum_probs=85.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHH-HHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI-RRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL-lk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..+++.|++|+..++.++ -++|.+|.|+||| .+..-.+++. .....+.++||.+|+...++.+.+++.+..
T Consensus 64 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT-----~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~ 135 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQGR---DIIGLAETGSGKT-----GAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALG 135 (249)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHH-----HHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEcCCCCCch-----hHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 368999999999999775 3799999999999 5544445444 443345689999999999999998886532
Q ss_pred C--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-c-cCCCCCCccEEEEecCC
Q 002130 811 P--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-N-QGITAGHFSHIFLIDAS 886 (961)
Q Consensus 811 ~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~-~~~~~g~FdhVIIDEAS 886 (961)
. +..+..+... ....-. ......+++|||+|......+. . ..+....+++||||||.
T Consensus 136 ~~~~~~~~~~~g~------~~~~~~-------------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 136 SSIGVQSAVIVGG------IDSMSQ-------------SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp GGGTCCEEEECTT------SCHHHH-------------HHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred ccCCeeEEEEECC------CChHHH-------------HHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 1 1222222111 110000 0011246789999987654322 2 23344679999999997
Q ss_pred CCCh
Q 002130 887 SATE 890 (961)
Q Consensus 887 QAtE 890 (961)
.+.+
T Consensus 197 ~l~~ 200 (249)
T 3ber_A 197 RILN 200 (249)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 5443
No 33
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.69 E-value=1.1e-07 Score=102.06 Aligned_cols=133 Identities=11% Similarity=0.019 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
.|++.|++|+..++.+. -++|.+|.|+||| .+....+++.+.. ..+.++||++|+...++.+.+++.+...
T Consensus 43 ~~~~~Q~~~i~~i~~~~---~~li~a~TGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 114 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGR---DILARAKNGTGKT-----AAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGK 114 (400)
T ss_dssp SCCHHHHHHHHHHHHTC---CEEEECCTTSCHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCC---CEEEECCCCcHHH-----HHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhc
Confidence 58999999999999775 3799999999999 5555555544432 2456999999999999999998887433
Q ss_pred C--CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc-CCCCCCccEEEEecCCCC
Q 002130 812 A--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GITAGHFSHIFLIDASSA 888 (961)
Q Consensus 812 ~--~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~-~~~~g~FdhVIIDEASQA 888 (961)
. ..+..+.... ....+.. .....++||++|......+... ......|++||||||..+
T Consensus 115 ~~~~~~~~~~g~~----~~~~~~~---------------~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 115 HCGISCMVTTGGT----NLRDDIL---------------RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 175 (400)
T ss_dssp TTTCCEEEECSSS----CHHHHHH---------------HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHH
T ss_pred ccCceEEEEeCCc----chHHHHH---------------HhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHh
Confidence 2 2222221110 0011100 1124678999997665433222 233457999999999876
Q ss_pred ChHH
Q 002130 889 TEPE 892 (961)
Q Consensus 889 tEPE 892 (961)
.+..
T Consensus 176 ~~~~ 179 (400)
T 1s2m_A 176 LSRD 179 (400)
T ss_dssp SSHH
T ss_pred hhhc
Confidence 6654
No 34
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.69 E-value=4.4e-08 Score=99.84 Aligned_cols=155 Identities=6% Similarity=-0.099 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh------CCCCeEEEEecchHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR------SPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~------~p~~RILVcAPSNsAaD~LleR 805 (961)
..+++.|++|+..++.+. -++|.+|.|+||| .+..-.+++.+.. ..+.++||.+|+...++.+.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~g~---~~l~~apTGsGKT-----~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 121 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALSGL---DMVGVAQTGSGKT-----LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV 121 (242)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEEECTTSCHH-----HHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCcCHHH-----HHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHH
Confidence 458999999999999775 3799999999999 4433334433332 2467899999999999999877
Q ss_pred HHhhCC--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-ccCCCCCCccEEEE
Q 002130 806 LMKDIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFL 882 (961)
Q Consensus 806 L~~~l~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~~~~~g~FdhVII 882 (961)
+.+... +..+..+... ....... .....+++|||+|......+. ...+...++++|||
T Consensus 122 ~~~~~~~~~~~~~~~~g~------~~~~~~~-------------~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 122 AAEYCRACRLKSTCIYGG------APKGPQI-------------RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp HHHHHHHTTCCEEEECTT------SCHHHHH-------------HHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred HHHHHhhcCceEEEEECC------CChHHHH-------------HHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 765211 2222222111 1100000 011134789999987654322 22334467999999
Q ss_pred ecCCCCChH---HHHHHHhccccCCCeEEEEeCC
Q 002130 883 IDASSATEP---ETMIVLGNLANENTRVIVTGAP 913 (961)
Q Consensus 883 DEASQAtEP---EaLIPLa~LA~~~trVVLaGDp 913 (961)
|||..+.+. ..+.-|........++++..-.
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 216 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 216 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 999654432 1122222222345667766543
No 35
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.68 E-value=1.4e-07 Score=100.98 Aligned_cols=154 Identities=9% Similarity=0.008 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..+++.|++|+..++.+.+ .-++|.+|.|+||| .+....+++.+.. ..+.++||++|+...|+.+.+++.+..
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~-~~~lv~apTGsGKT-----~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 46 NRPSKIQENALPLMLAEPP-QNLIAQSQSGTGKT-----AAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp CSCCHHHHHHHHHHHSSSC-CCEEEECCTTSCHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCC-CeEEEECCCCchHH-----HHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 4689999999999997621 24799999999999 5544444444332 345599999999999999988777632
Q ss_pred C---CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-c-cCCCCCCccEEEEecC
Q 002130 811 P---ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-N-QGITAGHFSHIFLIDA 885 (961)
Q Consensus 811 ~---~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~-~~~~~g~FdhVIIDEA 885 (961)
. ...+.-.... ..+. .......+|||+|......+. . ..+....|++||||||
T Consensus 120 ~~~~~~~~~~~~~~-------------------~~~~---~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEa 177 (412)
T 3fht_A 120 KFYPELKLAYAVRG-------------------NKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 177 (412)
T ss_dssp TTSTTCCEEEECTT-------------------CCCC---TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETH
T ss_pred hhcccceEEEeecC-------------------cchh---hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCH
Confidence 2 1111111100 0000 011235689999987654322 1 1233357999999999
Q ss_pred CCCCh----HHHHHHHhccccCCCeEEEEeCC
Q 002130 886 SSATE----PETMIVLGNLANENTRVIVTGAP 913 (961)
Q Consensus 886 SQAtE----PEaLIPLa~LA~~~trVVLaGDp 913 (961)
..+.+ ...+.-+........++|+..-.
T Consensus 178 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 209 (412)
T 3fht_A 178 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 209 (412)
T ss_dssp HHHHSTTTTHHHHHHHHHTSCTTCEEEEEESC
T ss_pred HHHhhcCCcHHHHHHHHhhCCCCceEEEEEee
Confidence 74432 12333333233455677776653
No 36
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.68 E-value=2.4e-08 Score=106.26 Aligned_cols=153 Identities=15% Similarity=0.086 Sum_probs=94.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..|++.|++|+..++.+. -++|.+|.|+||| .+.+..+++.+.. ..+.++||.+|+...++++.+++.+..
T Consensus 42 ~~~~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT-----~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKT-----GTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEECCCSSHHHH-----HHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHH-----HHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 368999999999999875 3699999999999 5544444444432 346799999999999999999887643
Q ss_pred CC--CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-ccCCCCCCccEEEEecCCC
Q 002130 811 PA--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDASS 887 (961)
Q Consensus 811 ~~--~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~~~~~g~FdhVIIDEASQ 887 (961)
.. ..+..+... .... ...+.+.+++||++|........ ...+....|++||||||..
T Consensus 114 ~~~~~~~~~~~g~------~~~~--------------~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 114 FHMDIKVHACIGG------TSFV--------------EDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173 (394)
T ss_dssp TTSCCCEEEECSS------CCHH--------------HHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred ccCCeeEEEEeCC------CchH--------------HHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH
Confidence 22 222221111 0000 00122346789999977654322 2234456799999999975
Q ss_pred CChH---HHHHHHhccccCCCeEEEEeC
Q 002130 888 ATEP---ETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 888 AtEP---EaLIPLa~LA~~~trVVLaGD 912 (961)
+.+. ..+.-+........++|+..-
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~~SA 201 (394)
T 1fuu_A 174 MLSSGFKEQIYQIFTLLPPTTQVVLLSA 201 (394)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEECS
T ss_pred hhCCCcHHHHHHHHHhCCCCceEEEEEE
Confidence 4322 222223222234556666554
No 37
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.66 E-value=1e-07 Score=106.27 Aligned_cols=134 Identities=10% Similarity=0.040 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCC---CCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP---KSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p---~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|.+.|.+|+..++.+. -++|.+|.|+||| .+....|++.+...+ +.++||.+|+...+.+..+.+.+
T Consensus 6 ~~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT-----~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGK---NALICAPTGSGKT-----FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp --CCHHHHHHHHHHHTTC---CEEEECCTTSCHH-----HHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCChHH-----HHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 468999999999999764 3799999999999 666666777776555 78999999999999999998877
Q ss_pred hCC--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccC-C-CCCCccEEEEec
Q 002130 809 DIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-I-TAGHFSHIFLID 884 (961)
Q Consensus 809 ~l~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~-~-~~g~FdhVIIDE 884 (961)
.+. +..+..+.... ... .........++|||+|..........+ + ....|++|||||
T Consensus 78 ~~~~~~~~~~~~~g~~------~~~-------------~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 138 (556)
T 4a2p_A 78 HFERQGYSVQGISGEN------FSN-------------VSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 138 (556)
T ss_dssp HHGGGTCCEEECCCC------------------------CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEET
T ss_pred HhcccCceEEEEeCCC------Ccc-------------hhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEEC
Confidence 432 33333332211 000 000122346789999987765433322 3 456799999999
Q ss_pred CCCCChHH
Q 002130 885 ASSATEPE 892 (961)
Q Consensus 885 ASQAtEPE 892 (961)
|..+....
T Consensus 139 ah~~~~~~ 146 (556)
T 4a2p_A 139 CHNTTGNH 146 (556)
T ss_dssp GGGCSTTS
T ss_pred CcccCCcc
Confidence 98776543
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.65 E-value=9.5e-08 Score=106.12 Aligned_cols=133 Identities=10% Similarity=0.039 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCC---CCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP---KSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p---~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|.+.|.+|+..++.+. -++|.+|.|+||| .+.+..+++.+...+ +.++||.+|+...+.+..+.+.+
T Consensus 3 ~~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT-----~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGK---NTIICAPTGCGKT-----FVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCHHHHHHHHHHHTTC---CEEEECCTTSCHH-----HHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCC---CEEEEeCCCChHH-----HHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 368899999999999765 3699999999999 666666777776655 78999999999999999888876
Q ss_pred hCC--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccC-C-CCCCccEEEEec
Q 002130 809 DIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-I-TAGHFSHIFLID 884 (961)
Q Consensus 809 ~l~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~-~-~~g~FdhVIIDE 884 (961)
.+. +..+..+....... ..........+|||+|..........+ + ....|++|||||
T Consensus 75 ~~~~~~~~~~~~~g~~~~~-------------------~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 135 (555)
T 3tbk_A 75 YFERLGYNIASISGATSDS-------------------VSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDE 135 (555)
T ss_dssp HHHTTTCCEEEECTTTGGG-------------------SCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETT
T ss_pred HhccCCcEEEEEcCCCcch-------------------hhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEEC
Confidence 432 23333332211000 000122346789999987765433322 2 345689999999
Q ss_pred CCCCChH
Q 002130 885 ASSATEP 891 (961)
Q Consensus 885 ASQAtEP 891 (961)
|..+...
T Consensus 136 ah~~~~~ 142 (555)
T 3tbk_A 136 CHNTSKN 142 (555)
T ss_dssp GGGCSTT
T ss_pred ccccCCc
Confidence 9887765
No 39
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.65 E-value=9.1e-08 Score=103.26 Aligned_cols=153 Identities=15% Similarity=0.112 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
.+++.|++|+..++.+. -++|.+|.|+||| .+....+++.+.. ..+.++||++|+...++++.+++.+...
T Consensus 59 ~~~~~Q~~ai~~i~~~~---~~lv~a~TGsGKT-----~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 130 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGR---DVIAQSQSGTGKT-----ATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGD 130 (410)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHH-----HHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCCch-----HHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhc
Confidence 57899999999999865 3799999999999 5555555554432 3567999999999999999998876322
Q ss_pred C--CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhh-hccCCCCCCccEEEEecCCCC
Q 002130 812 A--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 812 ~--~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L-~~~~~~~g~FdhVIIDEASQA 888 (961)
. ..+..+... ..+..++. ..-...+||++|......+ ....+....|++||||||..+
T Consensus 131 ~~~~~~~~~~g~----~~~~~~~~---------------~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 131 YMNVQCHACIGG----TNVGEDIR---------------KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 191 (410)
T ss_dssp TTTCCEEEECTT----SCHHHHHH---------------HHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred cCCeEEEEEECC----CCHHHHHH---------------HhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHH
Confidence 1 111111110 00111111 0113468999997655432 222344567999999999765
Q ss_pred ChH---HHHHHHhccccCCCeEEEEeC
Q 002130 889 TEP---ETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 889 tEP---EaLIPLa~LA~~~trVVLaGD 912 (961)
.+. ..+.-+........++|+..-
T Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~i~~SA 218 (410)
T 2j0s_A 192 LNKGFKEQIYDVYRYLPPATQVVLISA 218 (410)
T ss_dssp TSTTTHHHHHHHHTTSCTTCEEEEEES
T ss_pred HhhhhHHHHHHHHHhCccCceEEEEEc
Confidence 443 223333323334566666553
No 40
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.64 E-value=4.5e-08 Score=112.31 Aligned_cols=151 Identities=11% Similarity=0.100 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC-------CCCeEEEEecchHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-------PKSRILICAPWNRTCDKL 802 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-------p~~RILVcAPSNsAaD~L 802 (961)
..|.+.|.+||..++.. .+..-++|.+|.|+||| .+++.++.++++.. .+.+||+++|++.-+++.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT-----~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~ 251 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKT-----VVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDP 251 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHH-----HHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC--------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChH-----HHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHH
Confidence 47899999999999863 12223689999999999 77777777777765 678999999999998888
Q ss_pred HHHHHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-----ccCCCCCCc
Q 002130 803 MECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-----NQGITAGHF 877 (961)
Q Consensus 803 leRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-----~~~~~~g~F 877 (961)
..+..+.+. ..+..+.. . ..-...+|||+|........ ...+...+|
T Consensus 252 ~~~~~~~~~-~~~~~~~~--------------------~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~ 303 (590)
T 3h1t_A 252 KDKTFTPFG-DARHKIEG--------------------G-------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFF 303 (590)
T ss_dssp ---CCTTTC-SSEEECCC-----------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSC
T ss_pred HHHHHHhcc-hhhhhhhc--------------------c-------CCCCCCcEEEEEhhhhccccccccccccCCCCcc
Confidence 833322221 11111110 0 01145689999887664321 122445689
Q ss_pred cEEEEecCCCCChH--HHHHHHhccccCCCeEEEEeCCCC
Q 002130 878 SHIFLIDASSATEP--ETMIVLGNLANENTRVIVTGAPHN 915 (961)
Q Consensus 878 dhVIIDEASQAtEP--EaLIPLa~LA~~~trVVLaGDpkQ 915 (961)
++||||||...... ..+-.+.........+.|.|=|.+
T Consensus 304 ~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~ 343 (590)
T 3h1t_A 304 DLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLR 343 (590)
T ss_dssp SEEEESCCC---------CHHHHHHSTTSEEEEEESSCSC
T ss_pred CEEEEECCccccccchHHHHHHHHhCCcceEEEecccccc
Confidence 99999999877653 233233222223457777777653
No 41
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.64 E-value=1.3e-07 Score=102.96 Aligned_cols=126 Identities=11% Similarity=0.113 Sum_probs=82.6
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC-
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP- 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~- 811 (961)
.+++.|++|+..++.+. -++|.+|.|+||| ....-.+++.+ ..+.++||.+|+...|+++.+++.+...
T Consensus 21 ~~~~~Q~~~i~~i~~~~---~~lv~apTGsGKT-----~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 90 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGK---SFTMVAPTGVGKT-----TFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADE 90 (414)
T ss_dssp CCCHHHHHHHHHHTTTC---CEECCSCSSSSHH-----HHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHhcCC---CEEEEeCCCCCHH-----HHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHccC
Confidence 46799999999999765 3699999999999 43333334333 3578999999999999999999987433
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEecCC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEAS 886 (961)
+.++..+... ....-+. ...+.+ .+++|||+|......+... +....+++||||||.
T Consensus 91 ~~~v~~~~g~------~~~~~~~-----------~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 91 KVKIFGFYSS------MKKEEKE-----------KFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVD 149 (414)
T ss_dssp SCCEEECCTT------SCHHHHH-----------HHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHH
T ss_pred CceEEEEECC------CChhhHH-----------HHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChH
Confidence 2333333221 1110000 001111 2378999998765332221 344589999999995
No 42
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.64 E-value=1.1e-07 Score=97.18 Aligned_cols=131 Identities=11% Similarity=-0.002 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC----------CCCeEEEEecchHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----------PKSRILICAPWNRTCDK 801 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~----------p~~RILVcAPSNsAaD~ 801 (961)
..+++.|++|+..++.+. -++|.+|.|+||| .+.+-.+++.+... .+.++||.+|+...++.
T Consensus 44 ~~~~~~Q~~~i~~i~~~~---~~l~~a~TGsGKT-----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 115 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHR---DIMACAQTGSGKT-----AAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQ 115 (253)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHH-----HHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHH-----HHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHH
Confidence 468999999999999875 3699999999999 55444555444321 23599999999999999
Q ss_pred HHHHHHhhCCC--CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhc-cCCCCCCcc
Q 002130 802 LMECLMKDIPA--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFS 878 (961)
Q Consensus 802 LleRL~~~l~~--~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~-~~~~~g~Fd 878 (961)
+.+++.+.... ..+..+.... ....... .....++|||+|......+.. ..+....++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~---------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 116 ILSESQKFSLNTPLRSCVVYGGA----DTHSQIR---------------EVQMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp HHHHHHHHHTTSSCCEEEECSSS----CSHHHHH---------------HHSSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred HHHHHHHHhccCCceEEEEECCC----CHHHHHH---------------HhCCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 99888763221 1222111110 0111110 111357899999876654332 223445789
Q ss_pred EEEEecCCCCC
Q 002130 879 HIFLIDASSAT 889 (961)
Q Consensus 879 hVIIDEASQAt 889 (961)
+||||||..+.
T Consensus 177 ~lViDEah~~~ 187 (253)
T 1wrb_A 177 YIVLDEADRML 187 (253)
T ss_dssp EEEEETHHHHH
T ss_pred EEEEeCHHHHH
Confidence 99999997644
No 43
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.63 E-value=8.6e-08 Score=99.62 Aligned_cols=125 Identities=8% Similarity=0.068 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|++.|++|+..++.+. -++|.+|.|+||| .+....++ .. +.++||++|+...++++.+++.+...
T Consensus 15 ~~l~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT-----~~~~~~~~---~~--~~~~liv~P~~~L~~q~~~~~~~~~~ 81 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGK---NVVVRAKTGSGKT-----AAYAIPIL---EL--GMKSLVVTPTRELTRQVASHIRDIGR 81 (337)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHH-----HHHHHHHH---HH--TCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEEcCCCCcHH-----HHHHHHHH---hh--cCCEEEEeCCHHHHHHHHHHHHHHhh
Confidence 368999999999998764 3799999999999 44433333 22 77999999999999999999986322
Q ss_pred C--CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhc-cCCCCCCccEEEEecCCCC
Q 002130 812 A--SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 812 ~--~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~-~~~~~g~FdhVIIDEASQA 888 (961)
. ..+..+... ....- ..+.+.+++|+++|......+.. ..+....|++||||||..+
T Consensus 82 ~~~~~~~~~~~~------~~~~~--------------~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~ 141 (337)
T 2z0m_A 82 YMDTKVAEVYGG------MPYKA--------------QINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLM 141 (337)
T ss_dssp TSCCCEEEECTT------SCHHH--------------HHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHH
T ss_pred hcCCcEEEEECC------cchHH--------------HHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHh
Confidence 1 222222111 11000 11234567899999876544322 2233457999999999754
Q ss_pred C
Q 002130 889 T 889 (961)
Q Consensus 889 t 889 (961)
.
T Consensus 142 ~ 142 (337)
T 2z0m_A 142 F 142 (337)
T ss_dssp H
T ss_pred h
Confidence 3
No 44
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.57 E-value=2.1e-07 Score=99.22 Aligned_cols=153 Identities=9% Similarity=0.019 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHH-HHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVR-EAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLV-eaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
..+++.|++|+..++.+.+. -+++++|.||||| ...+ -++.++.....+.++||.+||..-|..+.+.+....
T Consensus 113 ~~pt~iQ~~ai~~il~~~~~-~~l~~a~TGsGKT-----~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPPQ-NLIAQSQSGTGKT-----AAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSCC-CEEEECCTTSSHH-----HHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCC-eEEEECCCCCCcc-----HHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 35788999999999976211 3799999999999 4433 233333333345589999999999999887776532
Q ss_pred C---CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-c-cCCCCCCccEEEEecC
Q 002130 811 P---ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-N-QGITAGHFSHIFLIDA 885 (961)
Q Consensus 811 ~---~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~-~~~~~g~FdhVIIDEA 885 (961)
. +..+.-+... ..+. .......+|||+|......+. . ..+...++++||||||
T Consensus 187 ~~~~~~~~~~~~~~-------------------~~~~---~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEa 244 (300)
T 3fmo_B 187 KFYPELKLAYAVRG-------------------NKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (300)
T ss_dssp TTSTTCCEEEESTT-------------------CCCC---TTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTH
T ss_pred hhCCCcEEEEEeCC-------------------ccHh---hhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCH
Confidence 1 1221111110 0000 011245689999986653322 1 1233457999999999
Q ss_pred CCCCh----HHHHHHHhccccCCCeEEEEeC
Q 002130 886 SSATE----PETMIVLGNLANENTRVIVTGA 912 (961)
Q Consensus 886 SQAtE----PEaLIPLa~LA~~~trVVLaGD 912 (961)
..+.+ -..+.-|........++|+..-
T Consensus 245 d~l~~~~~~~~~~~~i~~~~~~~~q~i~~SA 275 (300)
T 3fmo_B 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSA 275 (300)
T ss_dssp HHHHHSTTHHHHHHHHHTTSCTTCEEEEEES
T ss_pred HHHhhccCcHHHHHHHHHhCCCCCEEEEEec
Confidence 76543 1223333323334566666553
No 45
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.57 E-value=1e-07 Score=108.24 Aligned_cols=154 Identities=14% Similarity=0.159 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
.+++.|++|+..++.+. ..-++|.||.|+||| .+.+.++++.+.. ..+.+||+++|+...++++.+++.+...
T Consensus 141 ~p~~~Q~~ai~~i~~~~-~~~~ll~apTGsGKT-----~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~ 214 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNP-PRNMIGQSQSGTGKT-----AAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGK 214 (508)
T ss_dssp ECCCTTSSSHHHHHCSS-CCCEEEECCSSTTSH-----HHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHST
T ss_pred CcHHHHHHHHHHHHcCC-CCCEEEECCCCccHH-----HHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCC
Confidence 57899999999999762 124799999999999 6655555555443 2356999999999999999999987533
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhh-hccCCCCCCccEEEEecCCCCCh
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HNQGITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L-~~~~~~~g~FdhVIIDEASQAtE 890 (961)
... +++... .... . ......+++|||+|....... ....+....|++||||||....+
T Consensus 215 ~~~-~~~~~~------~~~~----------~----~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 215 YTE-VKTAFG------IKDS----------V----PKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp TSS-CCEEC------------------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred ccC-eeEEEE------eCCc----------c----cccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 221 111100 0000 0 000113678999998765432 23334456799999999975544
Q ss_pred H----HHHHHHhccccCCCeEEEEeCC
Q 002130 891 P----ETMIVLGNLANENTRVIVTGAP 913 (961)
Q Consensus 891 P----EaLIPLa~LA~~~trVVLaGDp 913 (961)
. ..+.-+........++|+..-.
T Consensus 274 ~~~~~~~~~~i~~~~~~~~~~i~lSAT 300 (508)
T 3fho_A 274 QQGLGDQSMRIKHLLPRNTQIVLFSAT 300 (508)
T ss_dssp C--CHHHHHHHHHHSCTTCEEEEEESC
T ss_pred cCCcHHHHHHHHHhCCcCCeEEEEeCC
Confidence 1 2233333233345676665543
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.54 E-value=2.4e-07 Score=102.77 Aligned_cols=138 Identities=13% Similarity=0.096 Sum_probs=92.8
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
...|++.|++|+..++... -.+|.||.|+||| .+.+.++.++ +.++||++|+...+++..+++.+ +
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT-----~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~-~ 156 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDK---RGCIVLPTGSGKT-----HVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-F 156 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTT---EEEEECCTTSCHH-----HHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGG-G
T ss_pred CCCcCHHHHHHHHHHHhcC---CEEEEeCCCCCHH-----HHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHh-C
Confidence 3579999999999998764 2799999999999 5555454432 67999999999999999999986 3
Q ss_pred CCCc-eEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 811 PASE-MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 811 ~~~~-ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
+.. +..+..... ...+|+|+|......... .....|++||||||..+.
T Consensus 157 -~~~~v~~~~g~~~----------------------------~~~~Ivv~T~~~l~~~~~--~~~~~~~liIvDEaH~~~ 205 (472)
T 2fwr_A 157 -GEEYVGEFSGRIK----------------------------ELKPLTVSTYDSAYVNAE--KLGNRFMLLIFDEVHHLP 205 (472)
T ss_dssp -CGGGEEEBSSSCB----------------------------CCCSEEEEEHHHHHHTHH--HHTTTCSEEEEETGGGTT
T ss_pred -CCcceEEECCCcC----------------------------CcCCEEEEEcHHHHHHHH--HhcCCCCEEEEECCcCCC
Confidence 222 222221100 135799999876543221 112469999999998877
Q ss_pred hHHHHHHHhccccCCCeEEEEeCCC
Q 002130 890 EPETMIVLGNLANENTRVIVTGAPH 914 (961)
Q Consensus 890 EPEaLIPLa~LA~~~trVVLaGDpk 914 (961)
.+..-- +.........+.|.|=+.
T Consensus 206 ~~~~~~-~~~~~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 206 AESYVQ-IAQMSIAPFRLGLTATFE 229 (472)
T ss_dssp STTTHH-HHHTCCCSEEEEEESCCC
T ss_pred ChHHHH-HHHhcCCCeEEEEecCcc
Confidence 664332 322333345666677665
No 47
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.54 E-value=3.8e-07 Score=101.53 Aligned_cols=153 Identities=10% Similarity=0.037 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHHhh--
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAPWNRTCDKLMECLMKD-- 809 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAPSNsAaD~LleRL~~~-- 809 (961)
.+++.|++|+..++.+.+ .-+||+||.|+||| .+....|++.+.. ..+.++||.+|+...|..+.+++.+.
T Consensus 114 ~p~~~Q~~ai~~il~~~~-~~~l~~a~TGsGKT-----~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 187 (479)
T 3fmp_B 114 RPSKIQENALPLMLAEPP-QNLIAQSQSGTGKT-----AAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGK 187 (479)
T ss_dssp SCCHHHHHHHHHHTSBSC-CEEEEECCSSSSHH-----HHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCC-CcEEEEcCCCCchh-----HHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHh
Confidence 567889999999997621 24799999999999 5544444443332 23448999999999999997776652
Q ss_pred -CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-c-cCCCCCCccEEEEecCC
Q 002130 810 -IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-N-QGITAGHFSHIFLIDAS 886 (961)
Q Consensus 810 -l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~-~~~~~g~FdhVIIDEAS 886 (961)
.....+.-.... ..+. ...-...+|||+|......+. . ..+....+++||||||.
T Consensus 188 ~~~~~~~~~~~~~-------------------~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah 245 (479)
T 3fmp_B 188 FYPELKLAYAVRG-------------------NKLE---RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (479)
T ss_dssp TSTTCCEEEESTT-------------------CCCC---TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH
T ss_pred hCCCceEEEEeCC-------------------cccc---ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH
Confidence 222111111100 0000 001134579999987653322 2 12334579999999997
Q ss_pred CCCh----HHHHHHHhccccCCCeEEEEeCC
Q 002130 887 SATE----PETMIVLGNLANENTRVIVTGAP 913 (961)
Q Consensus 887 QAtE----PEaLIPLa~LA~~~trVVLaGDp 913 (961)
.+.+ ...++-+........++|+..-.
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 276 (479)
T 3fmp_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 276 (479)
T ss_dssp HHHTSTTHHHHHHHHHTTSCTTSEEEEEESC
T ss_pred HHhhcCCcHHHHHHHHhhCCccceEEEEeCC
Confidence 4432 22333444333455677776654
No 48
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.51 E-value=6.5e-07 Score=103.97 Aligned_cols=133 Identities=11% Similarity=0.049 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCC---CCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP---KSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p---~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|.+.|++|+..++.+. -++|.+|.|+||| ...+..+++.+...+ +.++||++|+...+++..+.+.+
T Consensus 12 ~~lr~~Q~~~i~~~l~g~---~~iv~~~TGsGKT-----l~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGK---NTIICAPTGCGKT-----FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp -CCCHHHHHHHHHHHTTC---CEEEECCTTSSHH-----HHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHcCC---CEEEEcCCCchHH-----HHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 578999999999999765 3799999999999 555555665555433 27999999999999999988877
Q ss_pred hCC--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccC-C-CCCCccEEEEec
Q 002130 809 DIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQG-I-TAGHFSHIFLID 884 (961)
Q Consensus 809 ~l~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~-~-~~g~FdhVIIDE 884 (961)
.+. +..+..+..... ...........++|||+|..........+ + ....|++|||||
T Consensus 84 ~~~~~~~~v~~~~g~~~-------------------~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDE 144 (696)
T 2ykg_A 84 YFERHGYRVTGISGATA-------------------ENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 144 (696)
T ss_dssp HTTTTTCCEEEECSSSC-------------------SSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEET
T ss_pred HhccCCceEEEEeCCcc-------------------ccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeC
Confidence 543 223332222100 00011112246799999987765433322 2 345789999999
Q ss_pred CCCCChH
Q 002130 885 ASSATEP 891 (961)
Q Consensus 885 ASQAtEP 891 (961)
|..+...
T Consensus 145 aH~~~~~ 151 (696)
T 2ykg_A 145 CHNTSKQ 151 (696)
T ss_dssp GGGCSTT
T ss_pred CCcccCc
Confidence 9876554
No 49
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.50 E-value=5.6e-07 Score=96.93 Aligned_cols=131 Identities=12% Similarity=0.003 Sum_probs=82.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHH-HHHHHhCC------------------CCeEEEE
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAV-LQIRRRSP------------------KSRILIC 792 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaI-lQLlk~~p------------------~~RILVc 792 (961)
..+++.|++|+..++.+. -++|.+|.|+||| .+..-.+ ..++.... +.++||+
T Consensus 36 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 107 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKR---DLMACAQTGSGKT-----AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVL 107 (417)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHH-----HHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEE
T ss_pred CCCCHHHHHHHHHHccCC---CEEEEcCCCCHHH-----HHHHHHHHHHHHhccccchhhccccccccccccCCccEEEE
Confidence 367999999999998765 3699999999999 4433333 33333211 2579999
Q ss_pred ecchHHHHHHHHHHHhhCC--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-c
Q 002130 793 APWNRTCDKLMECLMKDIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-N 869 (961)
Q Consensus 793 APSNsAaD~LleRL~~~l~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~ 869 (961)
+|+...|+++.+++.+... +..+.-+.... ....... ......+|||+|......+. .
T Consensus 108 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~---------------~~~~~~~I~v~Tp~~l~~~l~~ 168 (417)
T 2i4i_A 108 APTRELAVQIYEEARKFSYRSRVRPCVVYGGA----DIGQQIR---------------DLERGCHLLVATPGRLVDMMER 168 (417)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSSCCEEEECSSS----CHHHHHH---------------HHTTCCSEEEECHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHhCcCCceEEEEECCC----CHHHHHH---------------HhhCCCCEEEEChHHHHHHHHc
Confidence 9999999999999876322 12222221110 0111111 11135789999987664432 2
Q ss_pred cCCCCCCccEEEEecCCCCC
Q 002130 870 QGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 870 ~~~~~g~FdhVIIDEASQAt 889 (961)
..+....+++||||||....
T Consensus 169 ~~~~~~~~~~iViDEah~~~ 188 (417)
T 2i4i_A 169 GKIGLDFCKYLVLDEADRML 188 (417)
T ss_dssp TSBCCTTCCEEEESSHHHHH
T ss_pred CCcChhhCcEEEEEChhHhh
Confidence 23344679999999997543
No 50
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.47 E-value=1.4e-07 Score=109.51 Aligned_cols=131 Identities=10% Similarity=0.034 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCC----CCeEEEEecchHHHHHH-HHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP----KSRILICAPWNRTCDKL-MECL 806 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p----~~RILVcAPSNsAaD~L-leRL 806 (961)
..|.+.|.+|+..++.+. -+||.+|.|+||| .+....+++++.... +.++||.+|+...+... .+++
T Consensus 6 ~~l~~~Q~~~i~~il~g~---~~ll~~~TGsGKT-----l~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l 77 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGK---NIIICLPTGCGKT-----RVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 77 (699)
T ss_dssp -CCCHHHHHHHHHHHSSC---CEEECCCTTSCHH-----HHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTH
T ss_pred CCccHHHHHHHHHHHhCC---CEEEEcCCCCcHH-----HHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 468999999999999864 3799999999999 666666666654422 28999999999999988 8888
Q ss_pred HhhCCC-CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-------ccCCCCCCcc
Q 002130 807 MKDIPA-SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-------NQGITAGHFS 878 (961)
Q Consensus 807 ~~~l~~-~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-------~~~~~~g~Fd 878 (961)
.+.++. ..+..+...... ...........+|||+|........ ...+....|+
T Consensus 78 ~~~~~~~~~v~~~~g~~~~-------------------~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~ 138 (699)
T 4gl2_A 78 QPFLKKWYRVIGLSGDTQL-------------------KISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFS 138 (699)
T ss_dssp HHHHTTTSCEEEEC----C-------------------CCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCS
T ss_pred HHHcCcCceEEEEeCCcch-------------------hhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCc
Confidence 775433 233333221100 0000122356899999987665422 1123445799
Q ss_pred EEEEecCCCCC
Q 002130 879 HIFLIDASSAT 889 (961)
Q Consensus 879 hVIIDEASQAt 889 (961)
+||||||..+.
T Consensus 139 lvViDEaH~~~ 149 (699)
T 4gl2_A 139 LIIIDECHHTN 149 (699)
T ss_dssp EEEEESGGGCB
T ss_pred EEEEECccccC
Confidence 99999997653
No 51
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.46 E-value=5.4e-07 Score=107.65 Aligned_cols=133 Identities=9% Similarity=0.019 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCC---CCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP---KSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p---~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|.+.|.+|+..++.+. -+||.+|.|+||| .+.+..|++.+...+ +.++||.+|+...+.+..+++.+
T Consensus 247 ~~l~~~Q~~~i~~~l~~~---~~ll~~~TGsGKT-----l~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGK---NALICAPTGSGKT-----FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -CCCHHHHHHHHHHHTTC---CEEEECCTTSCHH-----HHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCC---CEEEEeCCCChHH-----HHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 478999999999999765 3699999999999 666666777776554 78999999999999999888876
Q ss_pred hCC--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc-CC-CCCCccEEEEec
Q 002130 809 DIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GI-TAGHFSHIFLID 884 (961)
Q Consensus 809 ~l~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~-~~-~~g~FdhVIIDE 884 (961)
.+. +..+..+..... .. .........++|||+|.......... .+ ....|++|||||
T Consensus 319 ~~~~~~~~v~~~~g~~~------~~-------------~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 379 (797)
T 4a2q_A 319 HFERQGYSVQGISGENF------SN-------------VSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 379 (797)
T ss_dssp HHGGGTCCEEEECCC------------------------CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETT
T ss_pred hcccCCceEEEEeCCcc------hh-------------hhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEEC
Confidence 433 333333332110 00 00112235678999998766543322 22 345689999999
Q ss_pred CCCCChH
Q 002130 885 ASSATEP 891 (961)
Q Consensus 885 ASQAtEP 891 (961)
|..+...
T Consensus 380 aH~~~~~ 386 (797)
T 4a2q_A 380 CHNTTGN 386 (797)
T ss_dssp GGGCSTT
T ss_pred ccccCCC
Confidence 9877765
No 52
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.43 E-value=6.1e-07 Score=91.53 Aligned_cols=129 Identities=10% Similarity=0.068 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC---CCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS---PKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~---p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
+.+.|.+++..+..++ .++|.||.|+||| +.+...+++.+... .+.++++.+|+...+..+.+++...+
T Consensus 62 ~~~~q~~~i~~i~~g~---~~~i~g~TGsGKT-----t~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 62 VKKFESEILEAISQNS---VVIIRGATGCGKT-----TQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp GGGGHHHHHHHHHHCS---EEEEECCTTSSHH-----HHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhcCC---EEEEEeCCCCCcH-----HhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHh
Confidence 5678999999998765 5799999999999 66655555433322 13489999999999999999998643
Q ss_pred CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCC-C
Q 002130 811 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA-T 889 (961)
Q Consensus 811 ~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQA-t 889 (961)
...--.+++...+ .+... .-.+.+|||+|..........+ -.++++||||||... .
T Consensus 134 ~~~~~~~~g~~~~---------------~~~~~------~~~~~~Ivv~Tpg~l~~~l~~~--l~~~~~lVlDEah~~~~ 190 (235)
T 3llm_A 134 GEEPGKSCGYSVR---------------FESIL------PRPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHERDI 190 (235)
T ss_dssp TCCTTSSEEEEET---------------TEEEC------CCSSSEEEEEEHHHHHHHHHHC--CTTCCEEEECCTTSCCH
T ss_pred ccccCceEEEeec---------------hhhcc------CCCCCeEEEECHHHHHHHHHhh--hcCCcEEEEECCccCCc
Confidence 2211011111000 00000 0135789999974332222222 357899999999763 4
Q ss_pred hHHH
Q 002130 890 EPET 893 (961)
Q Consensus 890 EPEa 893 (961)
+.+.
T Consensus 191 ~~~~ 194 (235)
T 3llm_A 191 NTDF 194 (235)
T ss_dssp HHHH
T ss_pred chHH
Confidence 4443
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.42 E-value=6.6e-07 Score=100.03 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=101.7
Q ss_pred CCCCCHHHHHHHHHHHhcc-CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 731 NYKLDSDSNSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
...|.+.|++||..++... ...-.||.-+.|+||| .+.+.++.++.......++||++|+ ..+++..+.+.+.
T Consensus 35 ~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT-----~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 35 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKT-----LQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHH-----HHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHH-----HHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 3579999999998775321 1112578889999999 7777777777666566899999995 4678888888776
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
.+..++..+..... ...+..++||++|......... +....|++||||||..+.
T Consensus 109 ~~~~~v~~~~g~~~------------------------~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~k 162 (500)
T 1z63_A 109 APHLRFAVFHEDRS------------------------KIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIK 162 (500)
T ss_dssp CTTSCEEECSSSTT------------------------SCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGS
T ss_pred CCCceEEEEecCch------------------------hccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccC
Confidence 54444433321100 0123567899999876644222 334579999999998876
Q ss_pred hHH--HHHHHhccccCCCeEEEEeCCCCC
Q 002130 890 EPE--TMIVLGNLANENTRVIVTGAPHNS 916 (961)
Q Consensus 890 EPE--aLIPLa~LA~~~trVVLaGDpkQL 916 (961)
.+. ..-.+..+ ....++.|.|=|.|-
T Consensus 163 n~~~~~~~~l~~l-~~~~~l~LTaTP~~n 190 (500)
T 1z63_A 163 NPQTKIFKAVKEL-KSKYRIALTGTPIEN 190 (500)
T ss_dssp CTTSHHHHHHHTS-CEEEEEEECSSCSTT
T ss_pred CHhHHHHHHHHhh-ccCcEEEEecCCCCC
Confidence 553 22333323 234689999988764
No 54
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.34 E-value=9.2e-07 Score=103.92 Aligned_cols=127 Identities=12% Similarity=0.092 Sum_probs=82.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..||+.|.+|+..++... .-++|.||.|+||| +....++++.+.. .+.+|++++|+...|....+++.. +.
T Consensus 29 ~~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT-----~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~~-~~ 99 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKT-----LIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFKD-WE 99 (715)
T ss_dssp CBCCHHHHHHHHTTTTTT--CCEEEECCTTSCHH-----HHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHGG-GG
T ss_pred CCCCHHHHHHHHHHhcCC--CcEEEEcCCCCcHH-----HHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHHH-hh
Confidence 368999999999844332 24799999999999 5655556555543 368999999999999999999842 11
Q ss_pred --CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCC-CCCCccEEEEecCCCC
Q 002130 812 --ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGI-TAGHFSHIFLIDASSA 888 (961)
Q Consensus 812 --~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~-~~g~FdhVIIDEASQA 888 (961)
+.++..+.. +. ......+.+.+|+++|......+...+. .-..+++||||||...
T Consensus 100 ~~g~~v~~~~G--------------------~~--~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 157 (715)
T 2va8_A 100 LIGFKVAMTSG--------------------DY--DTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYL 157 (715)
T ss_dssp GGTCCEEECCS--------------------CS--SSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGG
T ss_pred cCCCEEEEEeC--------------------CC--CCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhc
Confidence 111111110 00 0001224578999999866544332221 1347899999999764
Q ss_pred C
Q 002130 889 T 889 (961)
Q Consensus 889 t 889 (961)
.
T Consensus 158 ~ 158 (715)
T 2va8_A 158 N 158 (715)
T ss_dssp G
T ss_pred C
Confidence 3
No 55
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.33 E-value=1.7e-06 Score=96.12 Aligned_cols=133 Identities=11% Similarity=-0.002 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHH-HHHHHHHhC-----CCCeEEEEecchHHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVRE-AVLQIRRRS-----PKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVe-aIlQLlk~~-----p~~RILVcAPSNsAaD~LleRL 806 (961)
.+++.|++|+..++.++ -+++.+|.|+||| ...+- ++..+++.. .+.++||++||...|.++.+.+
T Consensus 78 ~pt~iQ~~ai~~i~~g~---d~i~~a~TGsGKT-----~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~ 149 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGR---DLMACAQTGSGKT-----AAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEA 149 (434)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHH-----HHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCC---CEEEECCCCCCch-----HHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHH
Confidence 57899999999999775 3799999999999 44333 333444321 2569999999999999999888
Q ss_pred HhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhc-cCCCCCCccEEEEecC
Q 002130 807 MKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHN-QGITAGHFSHIFLIDA 885 (961)
Q Consensus 807 ~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~-~~~~~g~FdhVIIDEA 885 (961)
.+..... -+|+... .......-.. ......++|||+|......+.. ..+...++++||||||
T Consensus 150 ~~~~~~~-~~~~~~~---~gg~~~~~~~-------------~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEa 212 (434)
T 2db3_A 150 RKFAFES-YLKIGIV---YGGTSFRHQN-------------ECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEA 212 (434)
T ss_dssp HHHTTTS-SCCCCEE---CTTSCHHHHH-------------HHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETH
T ss_pred HHHhccC-CcEEEEE---ECCCCHHHHH-------------HHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccH
Confidence 7643221 1222110 0011110000 0111457899999765543322 2234467999999999
Q ss_pred CCCCh
Q 002130 886 SSATE 890 (961)
Q Consensus 886 SQAtE 890 (961)
..+.+
T Consensus 213 h~~~~ 217 (434)
T 2db3_A 213 DRMLD 217 (434)
T ss_dssp HHHTS
T ss_pred hhhhc
Confidence 77554
No 56
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.32 E-value=2.3e-06 Score=105.56 Aligned_cols=124 Identities=8% Similarity=0.039 Sum_probs=85.7
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI 810 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l 810 (961)
...|++.|++||..++.+. -++|.||.|+||| .+...+|.+++. .+.++||++|+...+..+.+++.+.+
T Consensus 37 ~f~l~~~Q~~aI~~il~g~---~vlv~apTGsGKT-----lv~~~~i~~~~~--~g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGD---SVFVAAHTSAGKT-----VVAEYAIAMAHR--NMTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTC---EEEEECCTTSCSH-----HHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHcCC---CEEEEECCCCcHH-----HHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 3568999999999999875 4799999999999 555555665555 37899999999999999999998755
Q ss_pred CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh-ccCCCCCCccEEEEecCCCCC
Q 002130 811 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH-NQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 811 ~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~-~~~~~~g~FdhVIIDEASQAt 889 (961)
.+..+.-+... .. .-.+++|+++|........ ........+++||||||....
T Consensus 107 ~~~~v~~l~G~------~~--------------------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~ 160 (997)
T 4a4z_A 107 DDVNIGLITGD------VQ--------------------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVN 160 (997)
T ss_dssp --CCEEEECSS------CE--------------------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCC
T ss_pred CCCeEEEEeCC------Cc--------------------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccccc
Confidence 43333322211 00 0034688888876443222 222223478999999998764
Q ss_pred h
Q 002130 890 E 890 (961)
Q Consensus 890 E 890 (961)
+
T Consensus 161 d 161 (997)
T 4a4z_A 161 D 161 (997)
T ss_dssp T
T ss_pred c
Confidence 4
No 57
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.31 E-value=1.3e-06 Score=102.75 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
.||+.|++|+..++.+. -++|.||.|+||| ....-++++.+.. +.+||+++|+...|....+++.. +..
T Consensus 25 ~l~~~Q~~~i~~i~~~~---~~lv~apTGsGKT-----~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~~-~~~ 93 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGK---NLLLAMPTAAGKT-----LLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFKK-WEK 93 (702)
T ss_dssp CCCCCCHHHHHHHTTCS---CEEEECSSHHHHH-----HHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHTT-TTT
T ss_pred CCCHHHHHHHHHHhCCC---cEEEEcCCccHHH-----HHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHHH-HHh
Confidence 67899999999977654 4799999999999 5555556555543 67999999999999999999942 221
Q ss_pred --CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCC-CCCCccEEEEecCCCC
Q 002130 813 --SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGI-TAGHFSHIFLIDASSA 888 (961)
Q Consensus 813 --~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~-~~g~FdhVIIDEASQA 888 (961)
.++..+... . .. ....+.+.+|+++|......+...+. .-..+++||||||...
T Consensus 94 ~g~~v~~~~G~---~---------------~~----~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 94 IGLRIGISTGD---Y---------------ES----RDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp TTCCEEEECSS---C---------------BC----CSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGG
T ss_pred cCCEEEEEeCC---C---------------Cc----chhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeec
Confidence 122111110 0 00 01123578999999866544332221 1346899999999753
No 58
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.29 E-value=1.1e-06 Score=99.76 Aligned_cols=133 Identities=10% Similarity=-0.007 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCC-----CCeEEEEecchHHHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-----KSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p-----~~RILVcAPSNsAaD~LleRL~ 807 (961)
.+++.|++|+..++...+. -+||.+|.|+||| .+.+-.|++.+.... +.++||++|+...|.++.+++.
T Consensus 94 ~~~~~Q~~~i~~~l~~~~~-~~lv~apTGsGKT-----l~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~ 167 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSSEDH-DVIARAKTGTGKT-----FAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 167 (563)
T ss_dssp SCCHHHHHHHHHHHSSSSE-EEEEECCTTSCHH-----HHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCC-eEEEECCCCCCcc-----HHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHH
Confidence 5899999999999953211 3699999999999 544444444443322 3489999999999999998887
Q ss_pred hhC------CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc--CCCCCCccE
Q 002130 808 KDI------PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ--GITAGHFSH 879 (961)
Q Consensus 808 ~~l------~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~--~~~~g~Fdh 879 (961)
+.. ....+..+... ......+... .-...+|||+|......+... ......+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~--------------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~ 229 (563)
T 3i5x_A 168 KIHDMNYGLKKYACVSLVGG----TDFRAAMNKM--------------NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 229 (563)
T ss_dssp HHHHHCGGGTTSCEEEECTT----SCHHHHHHHH--------------HHHCCSEEEECHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHhhccccCceeEEEEECC----cCHHHHHHHH--------------hcCCCCEEEECcHHHHHHHHhccccccccceE
Confidence 621 11112211111 0011111000 013568999998655322111 112346899
Q ss_pred EEEecCCCCC
Q 002130 880 IFLIDASSAT 889 (961)
Q Consensus 880 VIIDEASQAt 889 (961)
||||||..+.
T Consensus 230 lViDEah~l~ 239 (563)
T 3i5x_A 230 KVLDEADRLL 239 (563)
T ss_dssp EEEETHHHHT
T ss_pred EEEeCHHHHh
Confidence 9999997654
No 59
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.29 E-value=1.2e-06 Score=106.95 Aligned_cols=133 Identities=9% Similarity=0.019 Sum_probs=90.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCC---CCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP---KSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p---~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|.+.|.+|+..++.+. -++|.+|.|+||| .+.+..|++.+...+ +.++||.+|+...+.+..+++.+
T Consensus 247 ~~~r~~Q~~ai~~il~g~---~~ll~a~TGsGKT-----l~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGK---NALICAPTGSGKT-----FVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -CCCHHHHHHHHHHHTTC---CEEEECCTTSCHH-----HHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEeCCCchHH-----HHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 468999999999999765 3699999999999 666666666655444 77999999999999999888876
Q ss_pred hCC--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhcc-CC-CCCCccEEEEec
Q 002130 809 DIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQ-GI-TAGHFSHIFLID 884 (961)
Q Consensus 809 ~l~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~-~~-~~g~FdhVIIDE 884 (961)
.++ +..+..+...... . .........++|||+|.......... .+ ....|++|||||
T Consensus 319 ~~~~~~~~v~~~~G~~~~------~-------------~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDE 379 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFS------N-------------VSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 379 (936)
T ss_dssp HHHTTTCCEEEECCC------------------------CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEET
T ss_pred HhcccCceEEEEECCcch------h-------------hHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEEC
Confidence 432 3344333321100 0 00112234678999998776543322 22 344689999999
Q ss_pred CCCCChH
Q 002130 885 ASSATEP 891 (961)
Q Consensus 885 ASQAtEP 891 (961)
|..+...
T Consensus 380 aH~~~~~ 386 (936)
T 4a2w_A 380 CHNTTGN 386 (936)
T ss_dssp GGGCSTT
T ss_pred ccccCCC
Confidence 9877655
No 60
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.28 E-value=1.1e-06 Score=100.89 Aligned_cols=132 Identities=10% Similarity=-0.006 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC-----CCCeEEEEecchHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS-----PKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~-----p~~RILVcAPSNsAaD~LleRL 806 (961)
..+++.|++|+..++...+. -++|.+|.|+||| .+.+-.+++.+... .+.++||++||...|.++.+.+
T Consensus 42 ~~~~~~Q~~~i~~il~~~~~-dvlv~apTGsGKT-----l~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~ 115 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSEDH-DVIARAKTGTGKT-----FAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 115 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSSE-EEEEECCTTSCHH-----HHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCCC-eEEEEcCCCcHHH-----HHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHH
Confidence 35899999999999943211 3799999999999 54444444444332 2358999999999999999888
Q ss_pred HhhC------CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhcc--CCCCCC
Q 002130 807 MKDI------PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQ--GITAGH 876 (961)
Q Consensus 807 ~~~l------~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~--~~~~g~ 876 (961)
.+.. ....+..+... ......+ ..+ ...+|||+|......+... ......
T Consensus 116 ~~~~~~~~~~~~~~~~~~~gg----~~~~~~~----------------~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 175 (579)
T 3sqw_A 116 KKIHDMNYGLKKYACVSLVGG----TDFRAAM----------------NKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 175 (579)
T ss_dssp HHHHHHCGGGTTSCEEEECTT----SCHHHHH----------------HHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccccceEEEEEECC----ccHHHHH----------------HHHhcCCCCEEEECHHHHHHHHHhcccccccc
Confidence 7621 11112111110 0011111 111 2568999997655322111 112346
Q ss_pred ccEEEEecCCCCC
Q 002130 877 FSHIFLIDASSAT 889 (961)
Q Consensus 877 FdhVIIDEASQAt 889 (961)
+++||||||..+.
T Consensus 176 ~~~lViDEah~l~ 188 (579)
T 3sqw_A 176 VDYKVLDEADRLL 188 (579)
T ss_dssp CCEEEEETHHHHT
T ss_pred CCEEEEEChHHhh
Confidence 8999999997654
No 61
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.28 E-value=4.6e-06 Score=104.32 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHhc---cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSF---EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~---~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..+++.|++|+..++.. ..+.-.||+||.|+||| .+.+.++..++. .+.++||.+||...|.+..+++.+
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT-----~val~aa~~~~~--~g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT-----EVAMRAAFLAVD--NHKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTH-----HHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHH-----HHHHHHHHHHHH--hCCeEEEEechHHHHHHHHHHHHH
Confidence 45799999999999973 11224699999999999 555545554444 477999999999999999999987
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEecCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEAS 886 (961)
.+.... +++....+... ..+... ..+.+ .+.+|||+|.... ...+....+++||||||.
T Consensus 675 ~~~~~~-i~v~~l~~~~~--~~~~~~------------~~~~l~~g~~dIvV~T~~ll----~~~~~~~~l~lvIiDEaH 735 (1151)
T 2eyq_A 675 RFANWP-VRIEMISRFRS--AKEQTQ------------ILAEVAEGKIDILIGTHKLL----QSDVKFKDLGLLIVDEEH 735 (1151)
T ss_dssp HSTTTT-CCEEEESTTSC--HHHHHH------------HHHHHHTTCCSEEEECTHHH----HSCCCCSSEEEEEEESGG
T ss_pred HhhcCC-CeEEEEeCCCC--HHHHHH------------HHHHHhcCCCCEEEECHHHH----hCCccccccceEEEechH
Confidence 554321 12211111100 000000 00111 3578999996422 233445689999999996
Q ss_pred CC
Q 002130 887 SA 888 (961)
Q Consensus 887 QA 888 (961)
..
T Consensus 736 ~~ 737 (1151)
T 2eyq_A 736 RF 737 (1151)
T ss_dssp GS
T ss_pred hc
Confidence 53
No 62
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.27 E-value=3.8e-06 Score=101.31 Aligned_cols=129 Identities=12% Similarity=0.079 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHhcc---CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFE---GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~---~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|++.|++|+..|+... .+.-.||+||.|+||| .+...++++.+.. +.++||.+||...|.++.+++.+
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKT-----lvall~il~~l~~--g~qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKT-----VVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHH-----HHHHHHHHHHHHH--TSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHH
Confidence 368999999999999751 1224699999999999 6666667766665 78999999999999999999887
Q ss_pred hCC--CCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEec
Q 002130 809 DIP--ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLID 884 (961)
Q Consensus 809 ~l~--~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDE 884 (961)
.+. +.++.-+... ....-+. . .++.+ .+++|||+|... +. ..+....+++|||||
T Consensus 440 ~~~~~gi~v~~l~G~------~~~~~r~------~-----~~~~l~~g~~~IvVgT~~l---l~-~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 440 SFSKFNIHVALLIGA------TTPSEKE------K-----IKSGLRNGQIDVVIGTHAL---IQ-EDVHFKNLGLVIIDE 498 (780)
T ss_dssp HHTCSSCCEEECCSS------SCHHHHH------H-----HHHHHHSSCCCEEEECTTH---HH-HCCCCSCCCEEEEES
T ss_pred HhhhcCceEEEEeCC------CCHHHHH------H-----HHHHHhcCCCCEEEECHHH---Hh-hhhhccCCceEEecc
Confidence 543 2222222211 1111000 0 00111 357899999742 22 233446789999999
Q ss_pred CCCC
Q 002130 885 ASSA 888 (961)
Q Consensus 885 ASQA 888 (961)
|...
T Consensus 499 aHr~ 502 (780)
T 1gm5_A 499 QHRF 502 (780)
T ss_dssp CCCC
T ss_pred cchh
Confidence 9663
No 63
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.25 E-value=2.4e-06 Score=106.39 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|++.|++|+..++.+. -+||.||.|+||| .+...+|++.+.. +.++||++|+...+..+.+++.+.+.
T Consensus 183 f~ltp~Q~~AI~~i~~g~---dvLV~ApTGSGKT-----lva~l~i~~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDRGE---SVLVSAHTSAGKT-----VVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp SCCCHHHHHHHHHHTTTC---CEEEECCSSSHHH-----HHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEECCCCCChH-----HHHHHHHHHHHhc--CCeEEEEcCcHHHHHHHHHHHHHHhC
Confidence 468999999999987765 3699999999999 6666666666654 78999999999999999999988554
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhh-hccCCCCCCccEEEEecCCCCCh
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HNQGITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L-~~~~~~~g~FdhVIIDEASQAtE 890 (961)
...+ +.. .+. .-.+++|||+|....... ......-..+++||||||..+.+
T Consensus 253 ~Vgl--ltG------d~~--------------------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 253 DVGL--MTG------DIT--------------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp SEEE--ECS------SCB--------------------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred CccE--EeC------ccc--------------------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 2111 100 000 013578999987544322 22111123589999999987765
Q ss_pred H
Q 002130 891 P 891 (961)
Q Consensus 891 P 891 (961)
.
T Consensus 305 ~ 305 (1108)
T 3l9o_A 305 K 305 (1108)
T ss_dssp H
T ss_pred c
Confidence 4
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.22 E-value=5.6e-06 Score=101.70 Aligned_cols=162 Identities=10% Similarity=0.059 Sum_probs=103.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|.+.|++||..++.... .-.||.++.|+||| .+.+.+|.+++......++||++|+ ..+++-...+.+.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~-~~~LLad~tGlGKT-----i~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHA-PRVLLADEVGLGKT-----IEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSS-CEEEECCCTTSCHH-----HHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcC-CCEEEECCCCCcHH-----HHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 5789999999999987542 23689999999999 7777778777776666799999999 88888888887654
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhh--ccCCCCCCccEEEEecCCCCC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLH--NQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~--~~~~~~g~FdhVIIDEASQAt 889 (961)
+..+.-+... +. ....... ...+..++||++|......-. ...+....|++||||||..+.
T Consensus 224 ~l~v~v~~~~-~~--------~~~~~~~--------~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~k 286 (968)
T 3dmq_A 224 NLRFALFDDE-RY--------AEAQHDA--------YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLV 286 (968)
T ss_dssp CCCCEECCHH-HH--------HHHHHTT--------CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCC
T ss_pred CCCEEEEccc-hh--------hhhhhhc--------ccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhc
Confidence 2222222111 10 0000000 122356789999987653211 011234479999999998875
Q ss_pred hHHH-----HHHHhccc-cCCCeEEEEeCCCCCCc
Q 002130 890 EPET-----MIVLGNLA-NENTRVIVTGAPHNSPS 918 (961)
Q Consensus 890 EPEa-----LIPLa~LA-~~~trVVLaGDpkQLpP 918 (961)
.... .-.+..++ ....++.|.|=|.|...
T Consensus 287 n~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~ 321 (968)
T 3dmq_A 287 WSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGM 321 (968)
T ss_dssp CBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCS
T ss_pred CCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCH
Confidence 3221 11222232 23458999999887443
No 65
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.21 E-value=5.5e-06 Score=102.41 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|++.|++|+..++.+. -++|.+|.|+||| .+..-+|++.+.. +.++|+++|+...+++..+++.+.+.
T Consensus 85 f~L~~~Q~eai~~l~~g~---~vLV~apTGSGKT-----lva~lai~~~l~~--g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGE---SVLVSAHTSAGKT-----VVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTC---EEEEECCTTSCHH-----HHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEECCCCCChH-----HHHHHHHHHHhcc--CCeEEEECChHHHHHHHHHHHHHHhC
Confidence 459999999999998765 3799999999999 5544556655553 78999999999999999999987543
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh-hhccCCCCCCccEEEEecCCCCCh
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR-LHNQGITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~-L~~~~~~~g~FdhVIIDEASQAtE 890 (961)
+++.... +.. .-.+++|||+|...... +.........+++||||||..+.+
T Consensus 155 -----~vglltG---d~~--------------------~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d 206 (1010)
T 2xgj_A 155 -----DVGLMTG---DIT--------------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 206 (1010)
T ss_dssp -----CEEEECS---SCE--------------------ECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC
T ss_pred -----CEEEEeC---CCc--------------------cCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc
Confidence 1111000 000 00246799998754432 222222335789999999976543
No 66
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.20 E-value=3.4e-06 Score=99.49 Aligned_cols=125 Identities=12% Similarity=0.043 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHH-HHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 733 KLDSDSNSAVHQ-ILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 733 ~LN~eQr~AV~~-ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
.|++.|.+|+.. ++.+. -++|.||.|+||| ....-++++.+.. .+.+||+++|+..+|..+.+++.....
T Consensus 23 ~l~~~Q~~~i~~~~~~~~---~~lv~apTGsGKT-----~~~~l~il~~~~~-~~~~~l~i~P~raLa~q~~~~~~~l~~ 93 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGK---NALISIPTASGKT-----LIAEIAMVHRILT-QGGKAVYIVPLKALAEEKFQEFQDWEK 93 (720)
T ss_dssp BCCHHHHHHHTTTGGGTC---EEEEECCGGGCHH-----HHHHHHHHHHHHH-HCSEEEEECSSGGGHHHHHHHTGGGGG
T ss_pred CCCHHHHHHHHHHhcCCC---cEEEEcCCccHHH-----HHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHHHHHHHHh
Confidence 689999999998 55543 4799999999999 5543444444332 278999999999999999999953110
Q ss_pred -CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCC-CCCCccEEEEecCCCC
Q 002130 812 -ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGI-TAGHFSHIFLIDASSA 888 (961)
Q Consensus 812 -~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~-~~g~FdhVIIDEASQA 888 (961)
+.++..+.. ++. .....+.+.+||++|......+...+. .-..+++||||||...
T Consensus 94 ~g~~v~~~~G------~~~----------------~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 94 IGLRVAMATG------DYD----------------SKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp GTCCEEEECS------CSS----------------CCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCCEEEEecC------CCC----------------ccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 112211111 000 001224678999999876644332221 2346899999999754
No 67
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.19 E-value=4.5e-06 Score=103.99 Aligned_cols=126 Identities=10% Similarity=0.106 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhC-C
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDI-P 811 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l-~ 811 (961)
.+++.|++|+..++.+. -++|++|.|+||| ....-++++.+ ..+.++||.+||...|.++.+++.+.. .
T Consensus 78 ~pt~iQ~~ai~~il~g~---dvlv~ApTGSGKT-----l~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~~~ 147 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGK---SFTMVAPTGVGKT-----TFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADE 147 (1104)
T ss_dssp CCCHHHHHHHHHHTTTC---CEEECCSTTCCHH-----HHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTSCT
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEeCCCCcHH-----HHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhhCC
Confidence 57899999999999875 3799999999999 54444445544 357899999999999999999998732 1
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccCCCCCCccEEEEecCC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDAS 886 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEAS 886 (961)
+.++.-+.... ...+.-.. .+.+ .+.+|||+|......+... +...+|++||||||.
T Consensus 148 ~i~v~~l~Gg~----~~~er~~~-------------~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH 206 (1104)
T 4ddu_A 148 KVKIFGFYSSM----KKEEKEKF-------------EKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVD 206 (1104)
T ss_dssp TSCEEEECTTC----CTTHHHHH-------------HHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHH
T ss_pred CCeEEEEeCCC----CHHHHHHH-------------HHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCC
Confidence 11222222110 01000000 1112 2378999997655322211 334589999999994
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.11 E-value=8.9e-06 Score=95.47 Aligned_cols=167 Identities=9% Similarity=0.154 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHhc------cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCC-----CCeEEEEecchHHHH
Q 002130 732 YKLDSDSNSAVHQILSF------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-----KSRILICAPWNRTCD 800 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p-----~~RILVcAPSNsAaD 800 (961)
..|-+.|++||..++.. ....-.||.-+.|+||| .+.+.+|..+++..+ ..++||++|+ ..+.
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT-----~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKT-----LQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHH-----HHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHH-----HHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHH
Confidence 46889999999988742 11112478889999999 777778877776542 3579999997 5677
Q ss_pred HHHHHHHhhCCC-CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccE
Q 002130 801 KLMECLMKDIPA-SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSH 879 (961)
Q Consensus 801 ~LleRL~~~l~~-~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~Fdh 879 (961)
+-.+.+.+.++. ...+.+....+. .....+..+....+ ....+.|||+|..+.... ...+....|++
T Consensus 128 qW~~E~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~---------~~~~~~vvi~ty~~l~~~-~~~l~~~~~~~ 195 (644)
T 1z3i_X 128 NWYNEVGKWLGGRVQPVAIDGGSKD--EIDSKLVNFISQQG---------MRIPTPILIISYETFRLH-AEVLHKGKVGL 195 (644)
T ss_dssp HHHHHHHHHHGGGCCEEEECSSCHH--HHHHHHHHHHCCCS---------SCCSCCEEEEEHHHHHHH-TTTTTTSCCCE
T ss_pred HHHHHHHHHcCCCeeEEEEeCCCHH--HHHHHHHHHHHhcC---------CCCCCcEEEeeHHHHHhh-HHHhhcCCccE
Confidence 777777664332 233333322110 11112222211100 012468999998766432 22345568999
Q ss_pred EEEecCCCCChHH--HHHHHhccccCCCeEEEEeCCCCCC
Q 002130 880 IFLIDASSATEPE--TMIVLGNLANENTRVIVTGAPHNSP 917 (961)
Q Consensus 880 VIIDEASQAtEPE--aLIPLa~LA~~~trVVLaGDpkQLp 917 (961)
||||||..+-.+. ....+..+ ....+++|.|=|.|-.
T Consensus 196 vI~DEaH~ikn~~~~~~~al~~l-~~~~rl~LTgTPiqN~ 234 (644)
T 1z3i_X 196 VICDEGHRLKNSDNQTYLALNSM-NAQRRVLISGTPIQND 234 (644)
T ss_dssp EEETTGGGCCTTCHHHHHHHHHH-CCSEEEEECSSCSGGG
T ss_pred EEEECceecCChhhHHHHHHHhc-ccCcEEEEecCcccCC
Confidence 9999998875543 33333322 3557999999987754
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.97 E-value=1.5e-05 Score=95.78 Aligned_cols=172 Identities=10% Similarity=0.092 Sum_probs=106.1
Q ss_pred CCCCCHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHH-hCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 731 NYKLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk-~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+..|-+.|++||..++.. ....-.||.-+.|.||| .+.+.+|..++. .....++||++| ...+.+-.+.+.+
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT-----~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKT-----VQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTT-----HHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchH-----HHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHH
Confidence 457899999999877632 11113589999999999 666666666543 344678999999 5567888888887
Q ss_pred hCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCC
Q 002130 809 DIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSA 888 (961)
Q Consensus 809 ~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQA 888 (961)
..+...++.+....+. ...+..+....... .......++.||++|..+...... .+....|++||||||..+
T Consensus 308 ~~p~~~v~~~~g~~~~----r~~~~~~~~~~~~~---~~~~~~~~~dvvitTy~~l~~~~~-~l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 308 WAPDLNCICYMGNQKS----RDTIREYEFYTNPR---AKGKKTMKFNVLLTTYEYILKDRA-ELGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HSTTCCEEECCCSSHH----HHHHHHHHSCSCC--------CCCCCSEEEECTTHHHHTHH-HHHTSEEEEEEETTGGGG
T ss_pred HCCCceEEEEeCCHHH----HHHHHHHHhhcccc---ccccccccCCEEEecHHHHHhhHH-HHhcCCcceeehhhhhhh
Confidence 6666666655443211 11222222111000 011233577899999887754221 122347999999999887
Q ss_pred ChH--HHHHHHhccccCCCeEEEEeCCCCCC
Q 002130 889 TEP--ETMIVLGNLANENTRVIVTGAPHNSP 917 (961)
Q Consensus 889 tEP--EaLIPLa~LA~~~trVVLaGDpkQLp 917 (961)
..+ .....+..+ ....+++|.|=|.|-.
T Consensus 380 kn~~s~~~~~l~~l-~~~~rl~LTgTPiqN~ 409 (800)
T 3mwy_W 380 KNAESSLYESLNSF-KVANRMLITGTPLQNN 409 (800)
T ss_dssp CCSSSHHHHHHTTS-EEEEEEEECSCCCSSC
T ss_pred cCchhHHHHHHHHh-hhccEEEeeCCcCCCC
Confidence 433 333333322 2456899999986643
No 70
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.95 E-value=5.7e-06 Score=103.91 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=57.7
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC----CCCeEEEEecchHHHHHHHHHH
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----PKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~----p~~RILVcAPSNsAaD~LleRL 806 (961)
+..||++|++||... ...++|.|++||||| ++|++.|++++... ...+||++|+||.||++|.+|+
T Consensus 8 ~~~~t~eQ~~~i~~~-----~~~~~v~a~AGSGKT-----~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri 77 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST-----GQDILVAAAAGSGKT-----AVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRI 77 (1232)
T ss_dssp --CCCHHHHHHHHCC-----SSCEEEEECTTCCHH-----HHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC-----CCCEEEEecCCCcHH-----HHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHH
Confidence 357899999998863 236899999999999 99999999988762 3459999999999999999999
Q ss_pred Hh
Q 002130 807 MK 808 (961)
Q Consensus 807 ~~ 808 (961)
.+
T Consensus 78 ~~ 79 (1232)
T 3u4q_A 78 AE 79 (1232)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 71
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.93 E-value=1.8e-05 Score=98.12 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCC
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPAS 813 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~ 813 (961)
+ +.|++|+..++.++ -++|.||.|+||| ....-++..+.. .+.++||++||...|.++.+++.+.....
T Consensus 58 p-~iQ~~ai~~il~g~---dvlv~apTGSGKT-----l~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKE---SFAATAPTGVGKT-----SFGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp C-HHHHHHHHHHHTTC---CEECCCCBTSCSH-----HHHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred H-HHHHHHHHHHHhCC---CEEEEcCCCCCHH-----HHHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 7 99999999999775 3799999999999 533344444443 47899999999999999999988643322
Q ss_pred ce---EecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCC
Q 002130 814 EM---FRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 814 ~i---lRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAt 889 (961)
.+ .++.... ......-+. ...+.+.+.+|||+|......+.. .-..+++||||||..+.
T Consensus 127 ~i~~~~~v~~~~---Gg~~~~~~~-----------~~~~~l~~~~IlV~TP~~L~~~l~---~L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 127 GVGTENLIGYYH---GRIPKREKE-----------NFMQNLRNFKIVITTTQFLSKHYR---ELGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp CCSGGGSEEECC---SSCCSHHHH-----------HHHHSGGGCSEEEEEHHHHHHCST---TSCCCSEEEESCHHHHH
T ss_pred CCCccceEEEEe---CCCChhhHH-----------HHHhhccCCCEEEEcHHHHHHHHH---HhccCCEEEEeChhhhh
Confidence 11 0111100 011100000 001223447899999854433221 12479999999996544
No 72
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.92 E-value=1.5e-05 Score=95.97 Aligned_cols=148 Identities=9% Similarity=0.051 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH-hCCCCeEEEEecchHHHHHHHHHHHhhCCCC
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSRILICAPWNRTCDKLMECLMKDIPAS 813 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk-~~p~~RILVcAPSNsAaD~LleRL~~~l~~~ 813 (961)
...|++++..++.... .++|.||.|+||| +.|..+++.... ...+.+|++.+|+..+|..+.+++.+.+...
T Consensus 95 ~~~q~~~i~~~l~~~~--~vii~gpTGSGKT-----tllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~ 167 (773)
T 2xau_A 95 VHAQRDEFLKLYQNNQ--IMVFVGETGSGKT-----TQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVK 167 (773)
T ss_dssp GGGGHHHHHHHHHHCS--EEEEECCTTSSHH-----HHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHhCCC--eEEEECCCCCCHH-----HHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCc
Confidence 3468888888886532 4799999999999 533333222111 1125679999999999999999987644211
Q ss_pred ceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCC-CChHH
Q 002130 814 EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASS-ATEPE 892 (961)
Q Consensus 814 ~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQ-AtEPE 892 (961)
....++...|. . .. .-.+.+|+++|.....+....+..-..+++||||||.. ....+
T Consensus 168 v~~~vG~~i~~--------------~-~~-------~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d 225 (773)
T 2xau_A 168 LGEEVGYSIRF--------------E-NK-------TSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATD 225 (773)
T ss_dssp BTTTEEEEETT--------------E-EE-------CCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHH
T ss_pred hhheecceecc--------------c-cc-------cCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchH
Confidence 00001100000 0 00 01356788888755543332333445799999999974 55555
Q ss_pred HHHHHhc-cc--cCCCeEEEEe
Q 002130 893 TMIVLGN-LA--NENTRVIVTG 911 (961)
Q Consensus 893 aLIPLa~-LA--~~~trVVLaG 911 (961)
.++.+.. +. ....++|+.-
T Consensus 226 ~~~~~l~~l~~~~~~~~iIl~S 247 (773)
T 2xau_A 226 ILMGLLKQVVKRRPDLKIIIMS 247 (773)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHHhCCCceEEEEe
Confidence 4433321 11 1345666654
No 73
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.90 E-value=5.2e-05 Score=90.21 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=68.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEI 832 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I 832 (961)
-++|+||.|+||| ..+... +++ .+.++||++|+...|..+.+++.+.+....-.+++...
T Consensus 234 ~vlv~ApTGSGKT-----~a~~l~---ll~--~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~---------- 293 (666)
T 3o8b_A 234 VAHLHAPTGSGKS-----TKVPAA---YAA--QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT---------- 293 (666)
T ss_dssp EEEEECCTTSCTT-----THHHHH---HHH--TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE----------
T ss_pred eEEEEeCCchhHH-----HHHHHH---HHH--CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe----------
Confidence 3689999999999 333322 233 36699999999999999999987744322222222110
Q ss_pred HHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHHH
Q 002130 833 FQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETMI 895 (961)
Q Consensus 833 ~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaLI 895 (961)
.-.+.+|+++|.... +....+....+++|||||| ++.......
T Consensus 294 -----------------~~~~~~IlV~TPGrL--l~~~~l~l~~l~~lVlDEA-H~l~~~~~~ 336 (666)
T 3o8b_A 294 -----------------ITTGAPVTYSTYGKF--LADGGCSGGAYDIIICDEC-HSTDSTTIL 336 (666)
T ss_dssp -----------------ECCCCSEEEEEHHHH--HHTTSCCTTSCSEEEETTT-TCCSHHHHH
T ss_pred -----------------ccCCCCEEEECcHHH--HhCCCcccCcccEEEEccc-hhcCccHHH
Confidence 114568899886532 2233344557999999999 888876643
No 74
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.89 E-value=2e-05 Score=102.25 Aligned_cols=133 Identities=10% Similarity=0.029 Sum_probs=87.4
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..+|+-|.+|+..++.... -++|.+|.|+||| ....-+|++.+.+.++.++++.+|+.+-|++..+.+.+.+.
T Consensus 925 ~~fnpiQ~q~~~~l~~~~~--nvlv~APTGSGKT-----liaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~ 997 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVYNSDD--NVFVGAPTGSGKT-----ICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQ 997 (1724)
T ss_dssp SBCCHHHHHHHHHHHSCCS--CEEEECCTTSCCH-----HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCC--cEEEEeCCCCCch-----HHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhc
Confidence 4589999999999987643 3699999999999 44444566666666788999999999999999988876443
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCC---CCCccEEEEecCCCC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGIT---AGHFSHIFLIDASSA 888 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~---~g~FdhVIIDEASQA 888 (961)
..--++++.... +...+ ...+.+++|||||......+...... -....+||||||...
T Consensus 998 ~~~g~~V~~ltG---d~~~~----------------~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l 1058 (1724)
T 4f92_B 998 DRLNKKVVLLTG---ETSTD----------------LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLI 1058 (1724)
T ss_dssp TTSCCCEEECCS---CHHHH----------------HHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGG
T ss_pred hhcCCEEEEEEC---CCCcc----------------hhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhc
Confidence 221122221110 11111 12345778999997654332221111 125789999999754
Q ss_pred Ch
Q 002130 889 TE 890 (961)
Q Consensus 889 tE 890 (961)
.+
T Consensus 1059 ~d 1060 (1724)
T 4f92_B 1059 GG 1060 (1724)
T ss_dssp GS
T ss_pred CC
Confidence 33
No 75
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.85 E-value=2.9e-05 Score=96.39 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHhcc-----------CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCC-CCeEEEEecchHHHH
Q 002130 733 KLDSDSNSAVHQILSFE-----------GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-KSRILICAPWNRTCD 800 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~-----------~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p-~~RILVcAPSNsAaD 800 (961)
.+.+.|..||..++..- ...-.+|+.+.||||| .+++.++ +++...+ ..+|||.+|++.-++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT-----~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKT-----LTSFKAA-RLATELDFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHH-----HHHHHHH-HHHTTCTTCCEEEEEECGGGCCH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHH-----HHHHHHH-HHHHhcCCCceEEEEeCcHHHHH
Confidence 47899999999998630 0123599999999999 6765555 5554322 369999999999999
Q ss_pred HHHHHHHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhh--ccceEEEEeeccchhhhccC--C-CCC
Q 002130 801 KLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEEL--RQYKVISSTFVSSFRLHNQG--I-TAG 875 (961)
Q Consensus 801 ~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L--~~~rVVvtT~ssag~L~~~~--~-~~g 875 (961)
++.+.+..... ..+.+. . . ...+. ..| ...+|||+|......+.... + ...
T Consensus 345 Q~~~~f~~f~~-~~v~~~--~-----s-~~~l~---------------~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~ 400 (1038)
T 2w00_A 345 QTMKEYQRFSP-DSVNGS--E-----N-TAGLK---------------RNLDKDDNKIIVTTIQKLNNLMKAESDLPVYN 400 (1038)
T ss_dssp HHHHHHHTTST-TCSSSS--C-----C-CHHHH---------------HHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGG
T ss_pred HHHHHHHHhcc-cccccc--c-----C-HHHHH---------------HHhcCCCCCEEEEEHHHHHHHHhcccchhccc
Confidence 99988876332 111110 0 0 01111 111 35789999987665432111 1 123
Q ss_pred CccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCC
Q 002130 876 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPH 914 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpk 914 (961)
.+++||||||.++.....+--|.........+-|.|=|.
T Consensus 401 ~~~lvIiDEAHrs~~~~~~~~I~~~~p~a~~lgfTATP~ 439 (1038)
T 2w00_A 401 QQVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPI 439 (1038)
T ss_dssp SCEEEEEESCCTTHHHHHHHHHHHHCSSEEEEEEESSCC
T ss_pred cccEEEEEccchhcchHHHHHHHHhCCcccEEEEeCCcc
Confidence 689999999988765444433432223345667777664
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.84 E-value=2.3e-05 Score=90.11 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 733 KLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+-+.|++++..+... ......+|+.|.||||| .+. ++-. +.. +.+|+|+|||+.-++.+.+.+..
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT-----~~~--l~~~-~~~--~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKT-----VFV--EVLG-MQL--KKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHH-----HHH--HHHH-HHH--TCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHH-----HHH--HHHH-HhC--CCcEEEEcCCHHHHHHHHHHHHh
Confidence 4567899987766532 11125799999999999 322 2221 222 67999999999999999988765
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.83 E-value=2.1e-05 Score=90.44 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 733 KLDSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+-+.|++++..+... ......+|+.|.||||| ....-.+++ .+.+|+|++||+.-++++.+.+..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT-----~~~l~p~l~-----~~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKT-----LFSLLVSLE-----VKPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHH-----HHHHHHHHH-----HCSEEEEEESSGGGHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHH-----HHHHHHHHh-----CCCeEEEEcCCHHHHHHHHHHHHH
Confidence 3568899977766542 11125799999999999 332222222 277999999999999999877764
No 78
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.73 E-value=9.9e-05 Score=86.21 Aligned_cols=130 Identities=13% Similarity=0.056 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..+.+.|++||..++.+. -++|.+|.|+||| .. ..+-.+ . ...++||++|+..-+....++|.+.
T Consensus 43 ~~~rp~Q~~~i~~il~g~---d~lv~~pTGsGKT-----l~--~~lpal-~--~~g~~lVisP~~~L~~q~~~~l~~~-- 107 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGK---EVFLVMPTGGGKS-----LC--YQLPAL-C--SDGFTLVICPLISLMEDQLMVLKQL-- 107 (591)
T ss_dssp CSCCTTHHHHHHHHHTTC---CEEEECCTTSCTT-----HH--HHHHHH-T--SSSEEEEECSCHHHHHHHHHHHHHH--
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEECCCChHH-----HH--HHHHHH-H--cCCcEEEEeCHHHHHHHHHHHHHhc--
Confidence 357788999999999875 3799999999999 32 222222 2 2569999999999999999998864
Q ss_pred CCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccch---hhh---ccCCCCCCccEEEEecC
Q 002130 812 ASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSF---RLH---NQGITAGHFSHIFLIDA 885 (961)
Q Consensus 812 ~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag---~L~---~~~~~~g~FdhVIIDEA 885 (961)
+....-++.. ...+-..... . .. .......+||++|..... .+. ...+....+++||||||
T Consensus 108 gi~~~~l~~~------~~~~~~~~~~-~-~l-----~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEA 174 (591)
T 2v1x_A 108 GISATMLNAS------SSKEHVKWVH-A-EM-----VNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEV 174 (591)
T ss_dssp TCCEEECCSS------CCHHHHHHHH-H-HH-----HCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETG
T ss_pred CCcEEEEeCC------CCHHHHHHHH-H-Hh-----hcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECc
Confidence 3333333322 1111110000 0 00 001246789999986442 111 11112357899999999
Q ss_pred CCCC
Q 002130 886 SSAT 889 (961)
Q Consensus 886 SQAt 889 (961)
..+.
T Consensus 175 H~is 178 (591)
T 2v1x_A 175 HCCS 178 (591)
T ss_dssp GGGS
T ss_pred cccc
Confidence 6543
No 79
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=97.63 E-value=8.2e-05 Score=88.49 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
..++.+|.+||+.++... .+.++|.|+.|+||| ..+--++.++. .+++||||+..|+..|.+-..
T Consensus 174 ~~~T~dQ~~al~~~~~~~-~~~~vlta~RGRGKS-----a~lG~~~a~~~-----~~~~vtAP~~~a~~~l~~~~~ 238 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMP-PGVAAVTAARGRGKS-----ALAGQLISRIA-----GRAIVTAPAKASTDVLAQFAG 238 (671)
T ss_dssp SSCCHHHHHHHHHHTTCC-SEEEEEEECTTSSHH-----HHHHHHHHHSS-----SCEEEECSSCCSCHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHhh-hCeEEEecCCCCCHH-----HHHHHHHHHHH-----hCcEEECCCHHHHHHHHHHhh
Confidence 368999999999988753 235799999999999 55444444432 357999999999998777654
No 80
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=97.59 E-value=8.6e-05 Score=75.96 Aligned_cols=128 Identities=14% Similarity=0.082 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCc
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASE 814 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ 814 (961)
+..|..|+..++... ....+|.|+-|++|| .+.++.++.+.++ .+.+|.+.||++.+...+.+.+.- .+..
T Consensus 36 ~~~~~~a~~~l~~s~-~~~~iv~g~ggs~~~-----~~~~a~L~~~a~~-~Gr~V~vLAp~~~s~~~l~~~~~l--~~~t 106 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDR-PSLAIVSGQGGAAGQ-----RERVAELVMMARE-QGREVQIIAADRRSQMNMKQDERL--SGEL 106 (189)
T ss_dssp HHHHHHHHHHHHHHS-CCEECCBCSSCSHHH-----HHHHHHHHHHHHH-TTCCEEEECSTTHHHHHHSCTTTC--SSCS
T ss_pred CccchhHHHHHhccC-CceEEEecccchHHH-----HHHHHHHHHHHHh-cCeEEEEEcCchHHHHHHHhhcCc--Ccce
Confidence 478999999998765 346799999999999 8866666666665 689999999999999888776531 1111
Q ss_pred eEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCChHHHH
Q 002130 815 MFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATEPETM 894 (961)
Q Consensus 815 ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtEPEaL 894 (961)
+-| + .+...+...-.=+.+|||||.+..-=|.+
T Consensus 107 ~t~-------------------------~----------------------~ll~~~~~~tp~s~lIVD~AekLS~kE~~ 139 (189)
T 2l8b_A 107 ITG-------------------------R----------------------RQLLEGMAFTPGSTVIVDQGEKLSLKETL 139 (189)
T ss_dssp SST-------------------------T----------------------TTTTTSCCCCCCCEEEEEESSSHHHHHHH
T ss_pred eeh-------------------------h----------------------hhhcCCCCCCCCCEEEEechhhcCHHHHH
Confidence 100 0 00011110012247999999997776665
Q ss_pred HHHhccccCCCeEEEEeCCCCCCc
Q 002130 895 IVLGNLANENTRVIVTGAPHNSPS 918 (961)
Q Consensus 895 IPLa~LA~~~trVVLaGDpkQLpP 918 (961)
.-+......+.|+||+||..|+|-
T Consensus 140 ~Lld~A~~~naqvvll~~~~RqG~ 163 (189)
T 2l8b_A 140 TLLDGAARHNVQVLITDSGQRTGT 163 (189)
T ss_dssp HHHHHHHHTTCCEEEEESSTTTCS
T ss_pred HHHHHHHhcCCEEEEeCCcccccC
Confidence 544422235689999999999985
No 81
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.58 E-value=4.9e-05 Score=87.15 Aligned_cols=127 Identities=7% Similarity=-0.007 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCC
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPA 812 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~ 812 (961)
.+.+.|++|+..++.++ -++|.+|.|+||| .. ..+-.++. ..++||++|+..-++...++|... +
T Consensus 25 ~~r~~Q~~~i~~il~g~---d~lv~apTGsGKT-----l~--~~lp~l~~---~g~~lvi~P~~aL~~q~~~~l~~~--g 89 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGR---DCLVVMPTGGGKS-----LC--YQIPALLL---NGLTVVVSPLISLMKDQVDQLQAN--G 89 (523)
T ss_dssp SCCTTHHHHHHHHHTTC---CEEEECSCHHHHH-----HH--HHHHHHHS---SSEEEEECSCHHHHHHHHHHHHHT--T
T ss_pred CCCHHHHHHHHHHHcCC---CEEEECCCCcHHH-----HH--HHHHHHHh---CCCEEEECChHHHHHHHHHHHHHc--C
Confidence 56788999999999875 3699999999999 32 22222222 568999999999999999998763 2
Q ss_pred CceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhh-hccCCCCCCccEEEEecCCCCC
Q 002130 813 SEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRL-HNQGITAGHFSHIFLIDASSAT 889 (961)
Q Consensus 813 ~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L-~~~~~~~g~FdhVIIDEASQAt 889 (961)
.....++... . ..+....+... .-...+|+++|....... ....+....+++||||||..+.
T Consensus 90 i~~~~l~~~~-~---~~~~~~~~~~~-----------~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~ 152 (523)
T 1oyw_A 90 VAAACLNSTQ-T---REQQLEVMTGC-----------RTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS 152 (523)
T ss_dssp CCEEEECTTS-C---HHHHHHHHHHH-----------HHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC
T ss_pred CcEEEEeCCC-C---HHHHHHHHHHH-----------hcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC
Confidence 2333332210 0 00000000000 013468888886544211 0111233578999999997553
No 82
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.58 E-value=3.7e-05 Score=79.93 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=28.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.++|.|++|+||| +.+..++..+..+ +.+|++..+
T Consensus 14 i~litG~mGsGKT-----T~ll~~~~r~~~~--g~kVli~~~ 48 (223)
T 2b8t_A 14 IEFITGPMFAGKT-----AELIRRLHRLEYA--DVKYLVFKP 48 (223)
T ss_dssp EEEEECSTTSCHH-----HHHHHHHHHHHHT--TCCEEEEEE
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHhc--CCEEEEEEe
Confidence 6789999999999 7777777776654 778888866
No 83
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.50 E-value=0.00019 Score=71.59 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=28.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecc
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 795 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPS 795 (961)
.++|.||+|+||| +.+..++..+..+ +.+|++..+.
T Consensus 5 i~vi~G~~gsGKT-----T~ll~~~~~~~~~--g~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGPMYSGKT-----TELLSFVEIYKLG--KKKVAVFKPK 40 (184)
T ss_dssp EEEEEESTTSSHH-----HHHHHHHHHHHHT--TCEEEEEEEC
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEeec
Confidence 5689999999999 7777777766654 6788888765
No 84
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.49 E-value=0.0003 Score=79.15 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=37.4
Q ss_pred CceEeccCCCCCCccchHHH-HHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNV-VREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~T-LVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
-++|.||.|+||| .. +..++..++. .+.++||++|+...|+++.+++.
T Consensus 23 ~vlv~a~TGsGKT-----~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 23 MTVLDLHPGSGKT-----RKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp EEEECCCTTSCTT-----TTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHH-----HHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhc
Confidence 5799999999999 44 3333444443 37899999999999999998885
No 85
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.49 E-value=0.00025 Score=92.18 Aligned_cols=128 Identities=15% Similarity=0.097 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh---------CCCCeEEEEecchHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR---------SPKSRILICAPWNRTCDKL 802 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~---------~p~~RILVcAPSNsAaD~L 802 (961)
..||+-|.+++..++.... -+||..|.|+||| .+..-+|++.+.+ ..+.+||+.+|+.+-|.++
T Consensus 78 ~~ln~iQs~~~~~al~~~~--N~lv~APTGsGKT-----lva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~ 150 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALETDE--NLLLCAPTGAGKT-----NVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEM 150 (1724)
T ss_dssp SBCCHHHHHTHHHHHTCCC--CEEEECCTTSCCH-----HHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCC--cEEEEeCCcchHH-----HHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHH
Confidence 4699999999999997543 3699999999999 3333334444432 2367999999999999999
Q ss_pred HHHHHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCC---CCCccE
Q 002130 803 MECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGIT---AGHFSH 879 (961)
Q Consensus 803 leRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~---~g~Fdh 879 (961)
.+.+.+.+.... ++++... ++. . ...+.+..++|||||.-....+...... -....+
T Consensus 151 ~~~l~~~~~~~g-i~V~~~t-----------------Gd~-~-~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~ 210 (1724)
T 4f92_B 151 VGSFGKRLATYG-ITVAELT-----------------GDH-Q-LCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRL 210 (1724)
T ss_dssp HHHHHHHHTTTT-CCEEECC-----------------SSC-S-SCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEE
T ss_pred HHHHHHHHhhCC-CEEEEEE-----------------CCC-C-CCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCE
Confidence 988876443221 1221110 000 0 1123356789999997655433221111 135789
Q ss_pred EEEecCC
Q 002130 880 IFLIDAS 886 (961)
Q Consensus 880 VIIDEAS 886 (961)
|||||+.
T Consensus 211 vIiDEvH 217 (1724)
T 4f92_B 211 IILDEIH 217 (1724)
T ss_dssp EEETTGG
T ss_pred EEEecch
Confidence 9999994
No 86
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.47 E-value=0.00031 Score=78.78 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=42.3
Q ss_pred HHHHHHhccCCCCceEeccCCCCCCccchHHH-HHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 741 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNV-VREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 741 AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~T-LVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
++..++.+.+ .++|.||.|+||| .. +..++.+++. .+.++||++|+...|+++.+++.
T Consensus 11 ~i~~~l~~~~--~~lv~a~TGsGKT-----~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 11 VDEDIFRKKR--LTIMDLHPGAGKT-----KRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCGGGGSTTC--EEEECCCTTSSCC-----TTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHHhcCC--eEEEECCCCCCHh-----hHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhc
Confidence 4455555432 4699999999999 43 4444444554 36899999999999999988874
No 87
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.40 E-value=0.00083 Score=64.75 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
-...+.+++...+.......++|+|||||||| +++.++.+.+
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT------~l~~~l~~~~ 62 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKT------ATAIALARDL 62 (226)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSTTSSHH------HHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHH------HHHHHHHHHH
Confidence 36777888888876654446999999999999 4555555443
No 88
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.34 E-value=0.0022 Score=67.95 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHhcc--CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 735 DSDSNSAVHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 735 N~eQr~AV~~ILs~~--~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
|.....++..++... ...+++|+|||||||| +++.+|...+... +.+++.+.
T Consensus 19 ~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT------~la~~i~~~~~~~-~~~~~~i~ 72 (324)
T 1l8q_A 19 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKT------HLLQAAGNEAKKR-GYRVIYSS 72 (324)
T ss_dssp THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHH------HHHHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHH------HHHHHHHHHHHHC-CCEEEEEE
Confidence 444455555555443 2357999999999999 6677776655542 45555543
No 89
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.28 E-value=0.00062 Score=69.00 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=30.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecc
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 795 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPS 795 (961)
.+++.||.|+||| +.+..++.....+ +.+|++..|.
T Consensus 10 i~v~~G~mgsGKT-----T~ll~~a~r~~~~--g~kV~v~k~~ 45 (191)
T 1xx6_A 10 VEVIVGPMYSGKS-----EELIRRIRRAKIA--KQKIQVFKPE 45 (191)
T ss_dssp EEEEECSTTSSHH-----HHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHHC--CCEEEEEEec
Confidence 6789999999999 8888887776654 8899998875
No 90
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.25 E-value=0.00026 Score=83.18 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=41.6
Q ss_pred HHHHHHhccCCCCceEeccCCCCCCccchHHH-HHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 741 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNV-VREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 741 AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~T-LVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
++..++.++ -++|.+|.||||| .. +..++.+++. .+.++||++||...|+++.+++.
T Consensus 179 ~i~~l~~g~---dvlv~a~TGSGKT-----~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 179 DEDIFRKKR---LTIMDLHPGAGKT-----KRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp CGGGGSTTC---EEEECCCTTSSTT-----TTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CHHHHhcCC---eEEEEcCCCCCHH-----HHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHHHhc
Confidence 344444443 4799999999999 44 3344444444 36799999999999999998875
No 91
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.21 E-value=0.0016 Score=72.78 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=36.6
Q ss_pred CceEeccCCCCCCccchHHHH-HHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVV-REAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TL-VeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
.+||+||.|+||| .+. ..++..++. .+.++||++||...|+++.+.+.
T Consensus 4 ~~lv~a~TGsGKT-----~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 4 LTVLDLHPGAGKT-----RRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp EEEEECCTTSCTT-----TTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHH-----HHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhC
Confidence 4699999999999 443 333334444 36799999999999999887774
No 92
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.00079 Score=71.59 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHH-hccCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQIL-SFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 734 LN~eQr~AV~~IL-s~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
-++...+++..++ .....+.++|.||+||||| |++.++..
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKT------tl~~~la~ 58 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKK------TRCMALLE 58 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHH------HHHHTHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHH------HHHHHHHH
Confidence 4677777777776 4433334899999999999 66666666
No 93
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.0016 Score=67.76 Aligned_cols=42 Identities=10% Similarity=0.004 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
-++...+.+...+.....+.++|+|||||||| +++.++.+.+
T Consensus 29 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT------~la~~l~~~l 70 (327)
T 1iqp_A 29 GQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKT------TAALALAREL 70 (327)
T ss_dssp SCHHHHHHHHHHHHHTCCCEEEEESCTTSSHH------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHH------HHHHHHHHHh
Confidence 46777888888776654456999999999999 5566655544
No 94
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.15 E-value=0.00045 Score=73.28 Aligned_cols=41 Identities=22% Similarity=0.122 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHhc----cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 735 N~eQr~AV~~ILs~----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.+.+.+...+.. .....++|+|||||||| +++.++.+.+
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT------~l~~~~~~~~ 68 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKT------AVARLVLRRL 68 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHH------HHHHHHHHHH
Confidence 67778888777743 23457899999999999 5555555444
No 95
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.13 E-value=0.00078 Score=70.07 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=29.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecc
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 795 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPS 795 (961)
.+++.|+.|+||| +.+...+.....+ +.+||+..|.
T Consensus 30 l~vitG~MgsGKT-----T~lL~~a~r~~~~--g~kVli~k~~ 65 (214)
T 2j9r_A 30 IEVICGSMFSGKS-----EELIRRVRRTQFA--KQHAIVFKPC 65 (214)
T ss_dssp EEEEECSTTSCHH-----HHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHHC--CCEEEEEEec
Confidence 5689999999999 7777777776654 8899998774
No 96
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.05 E-value=0.0014 Score=73.43 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=37.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH-HHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ-IRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ-Llk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
-+||+||.|+||| .+.+-.+++ +.. .+.++||++||...|+++.+++..
T Consensus 10 ~vlv~a~TGSGKT-----~~~l~~~l~~~~~--~~~~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 10 TTVLDFHPGAGKT-----RRFLPQILAECAR--RRLRTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp EEEECCCTTSSTT-----TTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEcCCCCCHH-----HHHHHHHHHHHHh--cCCeEEEEcchHHHHHHHHHHHhc
Confidence 4799999999999 443233333 333 367999999999999999988863
No 97
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.01 E-value=0.0015 Score=69.66 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHhc----cCCC--CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE-ecchHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSF----EGQS--PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APWNRTCDKLMECLM 807 (961)
Q Consensus 735 N~eQr~AV~~ILs~----~~~~--P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc-APSNsAaD~LleRL~ 807 (961)
.+.+.+.+...+.. .... .++|.|||||||| +++.++...+....+..++.. +........+...+.
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKT------tl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKT------VTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHH------HHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHH------HHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 56677777666643 2223 6899999999999 566666665543213344433 233333444555555
Q ss_pred h
Q 002130 808 K 808 (961)
Q Consensus 808 ~ 808 (961)
.
T Consensus 96 ~ 96 (389)
T 1fnn_A 96 R 96 (389)
T ss_dssp H
T ss_pred H
Confidence 4
No 98
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0017 Score=70.98 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=27.8
Q ss_pred CccEEEEecCCCCChHHHHHHHhcccc-CCCeE--EEEeCCCCCCc
Q 002130 876 HFSHIFLIDASSATEPETMIVLGNLAN-ENTRV--IVTGAPHNSPS 918 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPEaLIPLa~LA~-~~trV--VLaGDpkQLpP 918 (961)
...+|||||+-+...-+.|..|..+.. ...++ |++|-...++.
T Consensus 132 ~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 132 RKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp CEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred CceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 345799999998887788888764332 23444 45565555543
No 99
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.00 E-value=0.00098 Score=69.08 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
-++...+.+...+.....+.++|+|||||||| +++.++.+.+
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt------~la~~l~~~l 62 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKT------ATAIALARDL 62 (319)
T ss_dssp SCHHHHHHHHTTTTTTCCCCEEEESSSSSSHH------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECcCCcCHH------HHHHHHHHHh
Confidence 36677777777765544456999999999999 5555555444
No 100
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.99 E-value=0.00087 Score=79.71 Aligned_cols=69 Identities=10% Similarity=0.048 Sum_probs=44.7
Q ss_pred CCCHHHH-----HHHHHHHhc---cCCCCceEeccCCCCCCccchHHH-HHHHHHHHHHhCCCCeEEEEecchHHHHHHH
Q 002130 733 KLDSDSN-----SAVHQILSF---EGQSPYLLEGPLCNNFVLSKTGNV-VREAVLQIRRRSPKSRILICAPWNRTCDKLM 803 (961)
Q Consensus 733 ~LN~eQr-----~AV~~ILs~---~~~~P~LI~GPPGTGKTls~~g~T-LVeaIlQLlk~~p~~RILVcAPSNsAaD~Ll 803 (961)
.+++-|+ +||..++.. ....-+||+||.|+||| .. +..++..+.. .+.++||++||...|+++.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKT-----l~~ll~il~~l~~--~~~~~lilaPTr~La~Q~~ 287 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKT-----RRILPQIIKDAIQ--KRLRTAVLAPTRVVAAEMA 287 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTT-----TTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHH-----HHHHHHHHHHHHh--CCCcEEEEccHHHHHHHHH
Confidence 3455566 777776610 01124799999999999 43 2333333343 4689999999999999999
Q ss_pred HHHHh
Q 002130 804 ECLMK 808 (961)
Q Consensus 804 eRL~~ 808 (961)
+++..
T Consensus 288 ~~l~~ 292 (673)
T 2wv9_A 288 EALRG 292 (673)
T ss_dssp HHTTT
T ss_pred HHHhc
Confidence 88863
No 101
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.96 E-value=0.0032 Score=67.30 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=20.5
Q ss_pred CCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 750 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 750 ~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
...++||+|+|||||| +++.+|....
T Consensus 24 ~~~~vLi~Ge~GtGKt------~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKE------LVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHH------HHHHHHHHHS
T ss_pred CCCcEEEECCCCchHH------HHHHHHHHhC
Confidence 3568999999999999 6777776543
No 102
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.95 E-value=0.00063 Score=69.87 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=30.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecc
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 795 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPS 795 (961)
.++|+||.|.||| +.|..++.....+ +.+|++.+|.
T Consensus 22 l~fiyG~MgsGKT-----t~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 22 IQVILGPMFSGKS-----TELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp EEEEEECTTSCHH-----HHHHHHHHHHHHT--TCCEEEEEET
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHHc--CCeEEEEccc
Confidence 6799999999999 8888888877665 6889998874
No 103
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=96.95 E-value=0.00058 Score=85.61 Aligned_cols=53 Identities=9% Similarity=0.052 Sum_probs=46.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhC----------CCCeEEEEecchHHHHHHHHHHHhh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----------PKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~----------p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
+..+|...+||||| .||++.+++++... .-.+|||+|+||+||.+|.+|+.+.
T Consensus 17 g~~lV~AsAGSGKT-----~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKT-----FTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHH-----HHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHH-----HHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 45699999999999 99999999998642 2358999999999999999999874
No 104
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.0012 Score=71.04 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=31.9
Q ss_pred CCccEEEEecCCCCChHH--HHHHHhccccCCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPE--TMIVLGNLANENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPE--aLIPLa~LA~~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+.+.+||||||..++.-. +|+....--...+.+||+. ++..|.|.|+|.
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 457899999997776542 2332221112356888875 567889988887
No 105
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.83 E-value=0.0021 Score=76.64 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=34.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
-++|.||.|+||| .. ++..+... .+.++++|+..+|.++.+++.+
T Consensus 157 ~vlv~apTGSGKT-----~~---al~~l~~~---~~gl~l~PtR~LA~Qi~~~l~~ 201 (677)
T 3rc3_A 157 IIFHSGPTNSGKT-----YH---AIQKYFSA---KSGVYCGPLKLLAHEIFEKSNA 201 (677)
T ss_dssp EEEEECCTTSSHH-----HH---HHHHHHHS---SSEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHH-----HH---HHHHHHhc---CCeEEEeCHHHHHHHHHHHHHh
Confidence 4799999999999 42 23333332 3458999999999999999876
No 106
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.82 E-value=0.0055 Score=64.66 Aligned_cols=42 Identities=14% Similarity=-0.009 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.-.++...+.+...+.... +..+|+.|||||||| +++.++.+
T Consensus 28 ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT------~la~~la~ 70 (324)
T 3u61_B 28 CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKT------TVAKALCH 70 (324)
T ss_dssp SCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHH------HHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHH------HHHHHHHH
Confidence 3457888888888887533 345677788999999 55566543
No 107
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=96.79 E-value=0.0022 Score=80.08 Aligned_cols=52 Identities=19% Similarity=0.141 Sum_probs=39.8
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCC-CeEEEEecchHHHHHHHHHHHhhCC
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK-SRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~-~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
-+|.|+|||||| ++|++.|..++..... .+||+..|.+..-. +.+||...++
T Consensus 4 ~lV~agAGSGKT-----~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt-~~~rl~~~l~ 56 (1166)
T 3u4q_B 4 EFLVGRSGSGKT-----KLIINSIQDELRRAPFGKPIIFLVPDQMTFL-MEYELAKTPD 56 (1166)
T ss_dssp EEEEECTTSSHH-----HHHHHHHHHHHHHCTTSSCEEEECCGGGHHH-HHHHHTCCSS
T ss_pred EEEEeCCCCChH-----HHHHHHHHHHHHhCCCCCcEEEEecCcccHH-HHHHHHHhhh
Confidence 489999999999 9999999999877544 79999966443222 6677776544
No 108
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.70 E-value=0.0051 Score=66.20 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCccEEEEecCCCCChHHHHHHHhc-ccc--CCCeEEEEe-CCCCCCccccCh
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGN-LAN--ENTRVIVTG-APHNSPSRVRSD 923 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~-LA~--~~trVVLaG-DpkQLpPvV~S~ 923 (961)
+.+.+||||||-.+++- +.-.|.. +-. ..+.+||+. ++.+|.|.|+|.
T Consensus 107 ~~~kvviIdead~l~~~-a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDA-AANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp SSCEEEEESCGGGBCHH-HHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CCcEEEEECchhhcCHH-HHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc
Confidence 46789999999776643 3222221 222 235666654 566788888775
No 109
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.68 E-value=0.024 Score=63.48 Aligned_cols=151 Identities=9% Similarity=0.093 Sum_probs=88.0
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCC
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIP 811 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~ 811 (961)
..|++.|+..+..+-..+ ..+|..+-+.||| .+++..++..+...++.+|+++|++-..|..+.+++...+.
T Consensus 162 ~~L~p~Qk~il~~l~~~R---~~vi~~sRq~GKT-----~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKR---MTVCNLSRQLGKT-----TVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCCHHHHHHHHHHHHSS---EEEEEECSSSCHH-----HHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCc---EEEEEEcCcCChh-----HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 368999999988764322 4689999999999 66666655444445678999999999998888877654211
Q ss_pred CC-ceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchhhhccCCCCCCccEEEEecCCCCCh
Q 002130 812 AS-EMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFRLHNQGITAGHFSHIFLIDASSATE 890 (961)
Q Consensus 812 ~~-~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~L~~~~~~~g~FdhVIIDEASQAtE 890 (961)
.. .++|-. + . .........+ ...+|.+.+. ..+.+ ...+++++||||++....
T Consensus 234 ~~P~ll~~~--------~----~---~~~~~~I~f~-----nGs~i~~lsa-~~~sl-----rG~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 234 LLPDFLQPG--------I----V---EWNKGSIELD-----NGSSIGAYAS-SPDAV-----RGNSFAMIYIEDCAFIPN 287 (385)
T ss_dssp HSCTTTSCC--------E----E---EECSSEEEET-----TSCEEEEEEC-SHHHH-----HTSCCSEEEEESGGGSTT
T ss_pred hChHhhhhh--------h----c---cCCccEEEeC-----CCCEEEEEEC-CCCCc-----cCCCCCEEEechhhhcCC
Confidence 00 000000 0 0 0000000000 2344444333 22222 223689999999998764
Q ss_pred -HHHHHHHhc-ccc-CCCeEEEEeCCCCC
Q 002130 891 -PETMIVLGN-LAN-ENTRVIVTGAPHNS 916 (961)
Q Consensus 891 -PEaLIPLa~-LA~-~~trVVLaGDpkQL 916 (961)
++.+-.+.. +.. ...++++++=|.-.
T Consensus 288 ~~el~~al~~~ls~~~~~kiiiiSTP~g~ 316 (385)
T 2o0j_A 288 FHDSWLAIQPVISSGRRSKIIITTTPNGL 316 (385)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEEECCCSS
T ss_pred CHHHHHHHHHHhhcCCCCcEEEEeCCCCc
Confidence 454444332 222 45799999877533
No 110
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.61 E-value=0.0044 Score=61.10 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..|.....++..++......+++|+|||||||| +++.++.+.+... +.+++...
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT------~la~~l~~~~~~~-~~~~~~~~ 87 (242)
T 3bos_A 34 AGNDELIGALKSAASGDGVQAIYLWGPVKSGRT------HLIHAACARANEL-ERRSFYIP 87 (242)
T ss_dssp -CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHH------HHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHH------HHHHHHHHHHHHc-CCeEEEEE
Confidence 346677777777665534457899999999999 5666665555432 44554443
No 111
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0053 Score=69.74 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=40.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh----c---------cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 726 LCPYSNYKLDSDSNSAVHQILS----F---------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 726 ~~~~~n~~LN~eQr~AV~~ILs----~---------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
...|.+...-++|++.++.++- . ..+.=+|++|||||||| .+|.+|+.-+ +..++.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKT------llAkAiA~e~----~~~f~~v 246 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKT------LLARACAAQT----NATFLKL 246 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHH------HHHHHHHHHH----TCEEEEE
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHH------HHHHHHHHHh----CCCEEEE
Confidence 3567677778899988876532 1 11223799999999999 6677776544 4455555
Q ss_pred ecc
Q 002130 793 APW 795 (961)
Q Consensus 793 APS 795 (961)
..+
T Consensus 247 ~~s 249 (434)
T 4b4t_M 247 AAP 249 (434)
T ss_dssp EGG
T ss_pred ehh
Confidence 543
No 112
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.57 E-value=0.0019 Score=62.58 Aligned_cols=52 Identities=17% Similarity=0.066 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHhc------cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 735 DSDSNSAVHQILSF------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 735 N~eQr~AV~~ILs~------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
++.|++|+..+..- .....++|+||+||||| |++.+|...+....+.+++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKT------tL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKT------HLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHH------HHHHHHHHHHHHHSCCCCCEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHH------HHHHHHHHHHHHHcCCeEEEE
Confidence 67899988877632 11236899999999999 666666666642234444443
No 113
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0063 Score=69.59 Aligned_cols=44 Identities=16% Similarity=-0.071 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHhcc-----------------CCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 732 YKLDSDSNSAVHQILSFE-----------------GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~-----------------~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
...++.+.+.+...+..- ....+||+|||||||| +++.++.+.+
T Consensus 41 liG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKT------tla~~la~~l 101 (516)
T 1sxj_A 41 VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT------TAAHLVAQEL 101 (516)
T ss_dssp CCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHH------HHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHH------HHHHHHHHHc
Confidence 345788888888877540 1247899999999999 5666665433
No 114
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.48 E-value=0.0078 Score=61.85 Aligned_cols=39 Identities=0% Similarity=-0.167 Sum_probs=29.6
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecch
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN 796 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSN 796 (961)
.+.++|++++|+||| +..+.++++.+.+ +.||+++-.-.
T Consensus 28 ~g~i~v~tG~GkGKT-----TaA~GlalRA~g~--G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKT-----TAAFGTAARAVGH--GKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHH-----HHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred CceEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEEeeC
Confidence 457899999999999 5555555666654 89999996543
No 115
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.47 E-value=0.0039 Score=65.20 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=27.8
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEe
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTG 911 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaG 911 (961)
+.+++|+|||| |-...+.+--|..++..+..||.+|
T Consensus 100 ~~~dvV~IDEa-QFf~~~~v~~l~~la~~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEV-QFFDDEIVSIVEKLSADGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCG-GGSCTHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCEEEEech-hcCCHHHHHHHHHHHHCCCEEEEee
Confidence 46899999999 7777666555665666778888888
No 116
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.016 Score=65.98 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=38.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----c------C---CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 727 CPYSNYKLDSDSNSAVHQILSF----E------G---QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 727 ~~~~n~~LN~eQr~AV~~ILs~----~------~---~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..|.+...-++|++.++.++.. . + +.=+|++|||||||| ++|.+|+.-+ +..++.+.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKT------llAkAiA~e~----~~~~~~v~ 247 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKT------LLAKAVAATI----GANFIFSP 247 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHH------HHHHHHHHHH----TCEEEEEE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHH------HHHHHHHHHh----CCCEEEEe
Confidence 4566666678888888776532 0 1 223799999999999 6777776544 34555544
Q ss_pred c
Q 002130 794 P 794 (961)
Q Consensus 794 P 794 (961)
.
T Consensus 248 ~ 248 (437)
T 4b4t_L 248 A 248 (437)
T ss_dssp G
T ss_pred h
Confidence 3
No 117
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0028 Score=71.91 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=38.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----c------C---CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 727 CPYSNYKLDSDSNSAVHQILSF----E------G---QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 727 ~~~~n~~LN~eQr~AV~~ILs~----~------~---~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..|.+..--++|++.+..++.. . + +.=+|++|||||||| .+|.+|+.-+ +..++.+.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT------~lakAiA~~~----~~~~~~v~ 238 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKT------MLVKAVANST----KAAFIRVN 238 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHH------HHHHHHHHHH----TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHH------HHHHHHHHHh----CCCeEEEe
Confidence 4566666678888888776532 0 1 112799999999999 6777776544 34555554
Q ss_pred cc
Q 002130 794 PW 795 (961)
Q Consensus 794 PS 795 (961)
.+
T Consensus 239 ~~ 240 (428)
T 4b4t_K 239 GS 240 (428)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 118
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.44 E-value=0.018 Score=61.17 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
++...+.+...+.... ...++|+||+||||| +++.++.+.+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT------~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKT------SIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHH------HHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHH------HHHHHHHHHhC
Confidence 5667777777775432 335799999999999 55666655543
No 119
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.44 E-value=0.036 Score=64.57 Aligned_cols=69 Identities=9% Similarity=-0.067 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 732 YKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..|++.|+..+..+-..+ ..+|.++-|.||| ++++..++..+...++.+|++++++...|..+.+++..
T Consensus 162 ~~l~p~Q~~i~~~l~~~r---~~~i~~~Rq~GKS-----~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKR---MTVCNLSRQLGKT-----TVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCCHHHHHHHHHHHHCS---EEEEEECSSSCHH-----HHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhhcccc---EEEEEEcCccChH-----HHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 468999999988762222 4689999999999 66665555444445677999999999999888877765
No 120
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.33 E-value=0.0038 Score=58.66 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+++.+.+...+.......++|+|||||||| +++.++.+.+
T Consensus 27 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT------~l~~~~~~~~ 67 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKT------AIVEGLAQRI 67 (195)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSCHH------HHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCceEEECCCCCCHH------HHHHHHHHHH
Confidence 4566666766665544456899999999999 4555555444
No 121
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.016 Score=66.55 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=39.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 726 LCPYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 726 ~~~~~n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
...|.+...-++|++.++.++.. ..+.=+|++|||||||| ++|.+|+.-+ +..++.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKT------lLAkAiA~e~----~~~fi~v 274 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKT------LCARAVANRT----DATFIRV 274 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHH------HHHHHHHHHH----TCEEEEE
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHH------HHHHHHHhcc----CCCeEEE
Confidence 35677777778899988875421 11223799999999999 6777776644 3455544
Q ss_pred ec
Q 002130 793 AP 794 (961)
Q Consensus 793 AP 794 (961)
..
T Consensus 275 s~ 276 (467)
T 4b4t_H 275 IG 276 (467)
T ss_dssp EG
T ss_pred Eh
Confidence 43
No 122
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.29 E-value=0.015 Score=66.15 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=25.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE-EecchH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI-CAPWNR 797 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV-cAPSNs 797 (961)
.++|.||+|+||| +|++.++..+ +.. +.+|++ ++.+..
T Consensus 99 vI~lvG~~GsGKT-----Tt~~kLA~~l-~~~-G~kVllv~~D~~r 137 (433)
T 3kl4_A 99 IIMLVGVQGSGKT-----TTAGKLAYFY-KKR-GYKVGLVAADVYR 137 (433)
T ss_dssp EEEECCCTTSCHH-----HHHHHHHHHH-HHT-TCCEEEEEECCSC
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHH-HHc-CCeEEEEecCccc
Confidence 4678899999999 7776666554 443 566654 555543
No 123
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.013 Score=66.13 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=38.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 726 LCPYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 726 ~~~~~n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
...|.+..--++|++.++.++.- ..+.=+|++|||||||| .+|.+|+.-+ +..++.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKT------llAkAiA~e~----~~~f~~v 213 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKT------LLARAVAHHT----DCKFIRV 213 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHH------HHHHHHHHHH----TCEEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHH------HHHHHHHHhh----CCCceEE
Confidence 35566666678888888765531 11223799999999999 6777776544 4455554
Q ss_pred ec
Q 002130 793 AP 794 (961)
Q Consensus 793 AP 794 (961)
..
T Consensus 214 ~~ 215 (405)
T 4b4t_J 214 SG 215 (405)
T ss_dssp EG
T ss_pred Eh
Confidence 44
No 124
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.23 E-value=0.003 Score=59.82 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=19.8
Q ss_pred CCCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 750 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 750 ~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
...+++|+|||||||| +++.+|.+.
T Consensus 23 ~~~~vll~G~~GtGKt------~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRM------TGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHH------HHHHHHHHS
T ss_pred CCCCEEEECCCCCCHH------HHHHHHHHh
Confidence 3458999999999999 677776553
No 125
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.024 Score=64.68 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=37.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc----------cC---CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 727 CPYSNYKLDSDSNSAVHQILSF----------EG---QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 727 ~~~~n~~LN~eQr~AV~~ILs~----------~~---~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..|.+..--++|++.++.++.. -+ +.=+|++|||||||| .+|.+|+.-+ +..++.+.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKT------lLAkAiA~e~----~~~fi~v~ 248 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKT------LLAKAVANQT----SATFLRIV 248 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHH------HHHHHHHHHH----TCEEEEEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHH------HHHHHHHHHh----CCCEEEEE
Confidence 4566566567888888766531 01 223799999999999 6777776544 33444444
No 126
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.18 E-value=0.0073 Score=57.00 Aligned_cols=42 Identities=17% Similarity=0.003 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.+.+.+.+...+.......++|+|||||||| +++.++.+.+.
T Consensus 27 ~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT------~la~~~~~~~~ 68 (187)
T 2p65_A 27 RDTEIRRAIQILSRRTKNNPILLGDPGVGKT------AIVEGLAIKIV 68 (187)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEESCGGGCHH------HHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCceEEECCCCCCHH------HHHHHHHHHHH
Confidence 4556666666665544456899999999999 55555555443
No 127
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.10 E-value=0.0056 Score=62.01 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 729 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
|.+...++.++++++.++.. .....+||+|||||||| +++.++...+
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT------~la~~la~~~ 63 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKT------LLAKAVATEA 63 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHH------HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHH------HHHHHHHHHh
Confidence 33444577788888766531 12346799999999999 6777776644
No 128
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.07 E-value=0.0045 Score=60.77 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=23.8
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.+++|+|||||||| +++.+|...+.. .+.+++..
T Consensus 55 ~~~~l~G~~GtGKT------~la~~i~~~~~~-~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKT------YLLAAIANELAK-RNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHH------HHHHHHHHHHHT-TTCCEEEE
T ss_pred CeEEEECCCCCCHH------HHHHHHHHHHHH-cCCeEEEE
Confidence 57899999999999 566666665543 24555543
No 129
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=96.05 E-value=0.028 Score=68.62 Aligned_cols=121 Identities=9% Similarity=-0.135 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh---h
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK---D 809 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~---~ 809 (961)
...+-|..++-.++.+. |.+...|+||| .+.+-.+ ++....+..++|+|||..-|..+.+-+.. .
T Consensus 83 ~pt~VQ~~~ip~ll~G~-----Iaea~TGeGKT-----laf~LP~--~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN-----IAEMKTGEGKT-----LTSTLPV--YLNALTGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp CCCHHHHHHHHHHHTTS-----EEECCTTSCHH-----HHHHHHH--HHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhHHHhCCC-----EEEccCCcHHH-----HHHHHHH--HHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 45788999999888764 89999999999 2222122 22233577999999999888877665544 3
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh--hh-cc-----CCCCCCccEEE
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LH-NQ-----GITAGHFSHIF 881 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~-~~-----~~~~g~FdhVI 881 (961)
+ +..+.-+.. .++.+.+ .....+.||++|..-.|. |. ++ .+....+.++|
T Consensus 151 l-gl~v~~i~g------g~~~~~r---------------~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 151 L-GLTVGLNLN------SMSKDEK---------------REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAV 208 (844)
T ss_dssp T-TCCEEECCT------TSCHHHH---------------HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEE
T ss_pred c-CCeEEEEeC------CCCHHHH---------------HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEE
Confidence 2 222222221 1222211 112357899999865532 11 11 23345789999
Q ss_pred EecCCC
Q 002130 882 LIDASS 887 (961)
Q Consensus 882 IDEASQ 887 (961)
||||-.
T Consensus 209 lDEaD~ 214 (844)
T 1tf5_A 209 IDEVDS 214 (844)
T ss_dssp EETHHH
T ss_pred ECchhh
Confidence 999964
No 130
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.03 E-value=0.0039 Score=64.34 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 729 YSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
|.+....+.+++++...+.. .....+||+|||||||| +++.+|...
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT------~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT------LLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHH------HHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHH------HHHHHHHHH
Confidence 44445678888888876642 22346899999999999 666766553
No 131
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=95.99 E-value=0.021 Score=70.06 Aligned_cols=121 Identities=6% Similarity=-0.150 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh---hC
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK---DI 810 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~---~l 810 (961)
..+-|..++-.++.+. |.+...|+||| .+.+ +-.++....+.+++|+|||..-|....+-+.. .+
T Consensus 112 P~~VQ~~~ip~Ll~G~-----Iaem~TGeGKT-----La~~--LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 112 PFDVQVMGAAALHLGN-----VAEMKTGEGKT-----LTCV--LPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp CCHHHHHHHHHHHTTE-----EEECCTTSCHH-----HHTH--HHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhHhcCC-----EEEecCCCccH-----HHHH--HHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 4578999998887664 89999999999 2222 22222223477999999999888766655543 32
Q ss_pred CCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccchh--hhc-c-----CCCCCCccEEEE
Q 002130 811 PASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSFR--LHN-Q-----GITAGHFSHIFL 882 (961)
Q Consensus 811 ~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag~--L~~-~-----~~~~g~FdhVII 882 (961)
+..+.-+.. .++.+.+ .....+.||++|..-.|. |.. + .+....+.++||
T Consensus 180 -GLsv~~i~g------g~~~~~r---------------~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 180 -GLQVGVILA------TMTPDER---------------RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp -TCCEEECCT------TCCHHHH---------------HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred -CCeEEEEeC------CCCHHHH---------------HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEE
Confidence 222222211 1222211 112357899999876531 221 1 234457999999
Q ss_pred ecCCCC
Q 002130 883 IDASSA 888 (961)
Q Consensus 883 DEASQA 888 (961)
|||-.+
T Consensus 238 DEaDsm 243 (922)
T 1nkt_A 238 DEVDSI 243 (922)
T ss_dssp TTHHHH
T ss_pred eChHHH
Confidence 999653
No 132
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.86 E-value=0.0059 Score=63.10 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHhc--------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSF--------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 735 N~eQr~AV~~ILs~--------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.+++++..++.. ....+++|+|||||||| +++.++.+.+
T Consensus 20 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT------~la~~la~~l 74 (310)
T 1ofh_A 20 QADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKT------EIARRLAKLA 74 (310)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHH------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHH------HHHHHHHHHh
Confidence 45566666655532 22457899999999999 6777777655
No 133
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=95.78 E-value=0.033 Score=68.01 Aligned_cols=123 Identities=6% Similarity=-0.161 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh---h
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK---D 809 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~---~ 809 (961)
...+-|..++-.++.+. +.+...||||| .+.+-.++ +....+.++||+|||..-|..+.+-+.. .
T Consensus 74 ~p~~VQ~~~i~~ll~G~-----Iaem~TGsGKT-----laf~LP~l--~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC-----IAEMRTGEGKT-----LTATLPAY--LNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp CCCHHHHHHHHHHHSSE-----EEECCTTSCHH-----HHHHHHHH--HHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHhhcccccCCe-----eeeecCCchHH-----HHHHHHHH--HHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 45688999999887664 88999999999 33222222 1223477999999999888776665544 3
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccch--hhhc-c-----CCCCCCccEEE
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSF--RLHN-Q-----GITAGHFSHIF 881 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag--~L~~-~-----~~~~g~FdhVI 881 (961)
+ +..+.-+.. .++...+ .....+.||++|..-.+ .|.. . .+....+.++|
T Consensus 142 l-gl~v~~i~G------G~~~~~r---------------~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lV 199 (853)
T 2fsf_A 142 L-GLTVGINLP------GMPAPAK---------------REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYAL 199 (853)
T ss_dssp T-TCCEEECCT------TCCHHHH---------------HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEE
T ss_pred c-CCeEEEEeC------CCCHHHH---------------HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEE
Confidence 2 222222211 1222211 12235789999987653 1221 1 13346799999
Q ss_pred EecCCCCC
Q 002130 882 LIDASSAT 889 (961)
Q Consensus 882 IDEASQAt 889 (961)
||||-.++
T Consensus 200 lDEaD~mL 207 (853)
T 2fsf_A 200 VDEVDSIL 207 (853)
T ss_dssp ESCHHHHT
T ss_pred ECchHHHH
Confidence 99997543
No 134
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.78 E-value=0.0072 Score=61.94 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 731 NYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+...++.+++++..++.. .....++|+|||||||| +++.+|...+
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT------~la~~la~~~ 68 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKT------LLAKAVAGEA 68 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHH------HHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHH------HHHHHHHHHh
Confidence 334456666666666541 11335899999999999 6777776544
No 135
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.74 E-value=0.0064 Score=63.34 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=20.2
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.++||+|||||||| +++.++.+.+..
T Consensus 68 ~~vll~G~~GtGKT------~la~~la~~l~~ 93 (309)
T 3syl_A 68 LHMSFTGNPGTGKT------TVALKMAGLLHR 93 (309)
T ss_dssp CEEEEEECTTSSHH------HHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHH------HHHHHHHHHHHh
Confidence 36899999999999 666776665543
No 136
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.71 E-value=0.0072 Score=64.51 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=33.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 727 CPYSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 727 ~~~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..|.+....+.+++++..++.. .....+||+|||||||| +++.+|...+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT------~la~aia~~~ 75 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS------YLAKAVATEA 75 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHH------HHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHH------HHHHHHHHHH
Confidence 3455555678888888877621 11234899999999999 6777776644
No 137
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.70 E-value=0.027 Score=64.28 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=25.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEE-EEecch
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL-ICAPWN 796 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RIL-VcAPSN 796 (961)
.++|.|++|+||| +|++.++..+.+ .+.+|+ |++.+.
T Consensus 102 vIlivG~~G~GKT-----Tt~~kLA~~l~~--~G~kVllv~~D~~ 139 (443)
T 3dm5_A 102 ILLMVGIQGSGKT-----TTVAKLARYFQK--RGYKVGVVCSDTW 139 (443)
T ss_dssp EEEEECCTTSSHH-----HHHHHHHHHHHT--TTCCEEEEECCCS
T ss_pred EEEEECcCCCCHH-----HHHHHHHHHHHH--CCCeEEEEeCCCc
Confidence 4678899999999 777777665544 366665 455544
No 138
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.63 E-value=0.012 Score=69.20 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 735 DSDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 735 N~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
-+.|++.+..+... ......+|+.|.|||||+ ..++-++..+... +.+|+|+|+|+.-++.+.+.+..
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~----a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTI----MALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHH----HHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHH----HHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHH
Confidence 57898888766543 112257999999999992 2233344433333 67999999999999999877654
No 139
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.58 E-value=0.0084 Score=63.24 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.+++..+.+...+.....+.++|+|||||||| +++.++.+.+.
T Consensus 41 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT------~la~~la~~l~ 83 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKT------STILALTKELY 83 (353)
T ss_dssp SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHH------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEECCCCCCHH------HHHHHHHHHhC
Confidence 35566777777776543345899999999999 66666665543
No 140
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.57 E-value=0.008 Score=63.70 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=32.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 728 PYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 728 ~~~n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.|.+....+.+++.+..++.. .....++|+|||||||| +++.+|...+
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT------~la~ala~~~ 73 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT------LLAKAIANEC 73 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHH------HHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHH------HHHHHHHHHh
Confidence 444445567777777766542 12335899999999999 6777776543
No 141
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.50 E-value=0.034 Score=58.18 Aligned_cols=42 Identities=14% Similarity=0.038 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHhc-----cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 734 LN~eQr~AV~~ILs~-----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
......+++...+.. ....+++|+|||||||| +++.+|.+.+
T Consensus 16 g~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT------~la~~i~~~~ 62 (324)
T 1hqc_A 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKT------TLAHVIAHEL 62 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCH------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHH------HHHHHHHHHh
Confidence 456666777666642 23357899999999999 6667766544
No 142
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.45 E-value=0.0087 Score=63.19 Aligned_cols=40 Identities=15% Similarity=-0.001 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 736 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 736 ~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+..++++...+......++||+|||||||| +++.++.+.+
T Consensus 30 ~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT------~la~~la~~~ 69 (350)
T 1g8p_A 30 EDMKLALLLTAVDPGIGGVLVFGDRGTGKS------TAVRALAALL 69 (350)
T ss_dssp HHHHHHHHHHHHCGGGCCEEEECCGGGCTT------HHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCCCceEEEECCCCccHH------HHHHHHHHhC
Confidence 334444443332222346999999999999 6777776644
No 143
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.44 E-value=0.01 Score=61.80 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 729 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
|.+..-++.+++++...+.. .....++|+|||||||| +++.+|...+
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT------~la~~la~~~ 78 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKT------LLARAVATEC 78 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHH------HHHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHH------HHHHHHHHHh
Confidence 43444578888888876632 12346899999999999 6677766543
No 144
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.36 E-value=0.005 Score=58.26 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhc--cCCCCceEeccCCCCCC
Q 002130 736 SDSNSAVHQILSF--EGQSPYLLEGPLCNNFV 765 (961)
Q Consensus 736 ~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKT 765 (961)
..+.+.+...+.. ....+++|+||||||||
T Consensus 10 s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt 41 (143)
T 3co5_A 10 SAAIQEMNREVEAAAKRTSPVFLTGEAGSPFE 41 (143)
T ss_dssp CHHHHHHHHHHHHHHTCSSCEEEEEETTCCHH
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCccHH
Confidence 4444444444432 23457999999999999
No 145
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.32 E-value=0.037 Score=65.63 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
..++..|.+|+..++.. .+....+|.|.+|+||| .+++.++.++ +..+||+||+...|..+.+.|...
T Consensus 7 ~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt-----~~~a~~~~~~-----~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 7 PSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKT-----VTMAKVIEAL-----GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHH-----HHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHH-----HHHHHHHHHh-----CCCEEEEecCHHHHHHHHHHHHHH
Confidence 46789999999987754 22224579999999999 8888777653 447999999999999999999987
Q ss_pred CCCCceEecc
Q 002130 810 IPASEMFRAN 819 (961)
Q Consensus 810 l~~~~ilRV~ 819 (961)
++...+..+.
T Consensus 77 ~~~~~V~~fp 86 (664)
T 1c4o_A 77 FPENAVEYFI 86 (664)
T ss_dssp CTTSEEEECC
T ss_pred CCCCeEEEcC
Confidence 7665555544
No 146
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.31 E-value=0.016 Score=59.45 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=20.4
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
..+++|+|||||||| +++.+|.+...
T Consensus 29 ~~~vll~G~~GtGKt------~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKE------LIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHH------HHHHHHHHTST
T ss_pred CCCEEEECCCCCcHH------HHHHHHHHhcC
Confidence 458999999999999 67777665443
No 147
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.30 E-value=0.012 Score=63.26 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=32.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc-----------c-CCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 727 CPYSNYKLDSDSNSAVHQILSF-----------E-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 727 ~~~~n~~LN~eQr~AV~~ILs~-----------~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..|.+..-.+.++++++.++.. . ....+||+|||||||| +++.+|...+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT------~la~ala~~~ 69 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKS------YLAKAVATEA 69 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHH------HHHHHHHHHT
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHH------HHHHHHHHHc
Confidence 3455555567788888776521 1 1235899999999999 6677766544
No 148
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.28 E-value=0.063 Score=66.15 Aligned_cols=135 Identities=9% Similarity=-0.058 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh---h
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK---D 809 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~---~ 809 (961)
...+-|..++-.++.+. +.+...|+||| .+.+-.+ ++....+..++|+|||..-|....+-+.. .
T Consensus 79 ~Pt~VQ~~~ip~LlqG~-----IaeakTGeGKT-----Lvf~Lp~--~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK-----IAEMKTGEGKT-----LVATLAV--ALNALTGKGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp CCCHHHHHHHHHHHTTS-----EEECCSTHHHH-----HHHHHHH--HHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHhhcccccCCc-----eeeccCCCchH-----HHHHHHH--HHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 45788999999888764 88999999999 3322222 22223477999999999888777766554 2
Q ss_pred CCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccceEEEEeeccch--hhhc-c-----CCCCC---Ccc
Q 002130 810 IPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQYKVISSTFVSSF--RLHN-Q-----GITAG---HFS 878 (961)
Q Consensus 810 l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~rVVvtT~ssag--~L~~-~-----~~~~g---~Fd 878 (961)
+ +..+.-+. ..++...+ .....+.||++|..-.+ .+.. . .+... .+.
T Consensus 147 l-GLsv~~i~------Gg~~~~~r---------------~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~ 204 (997)
T 2ipc_A 147 L-GLSVGVIQ------HASTPAER---------------RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLH 204 (997)
T ss_dssp T-TCCEEECC------TTCCHHHH---------------HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSC
T ss_pred c-CCeEEEEe------CCCCHHHH---------------HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcc
Confidence 2 22221111 11222211 12235789999987664 1211 1 12334 788
Q ss_pred EEEEecCCCCChHHHHHHHhccccCCCeEEEEe
Q 002130 879 HIFLIDASSATEPETMIVLGNLANENTRVIVTG 911 (961)
Q Consensus 879 hVIIDEASQAtEPEaLIPLa~LA~~~trVVLaG 911 (961)
++|||||-.++ +-...+-+|+.|
T Consensus 205 ~lIIDEaDsmL----------iDeartPLIISg 227 (997)
T 2ipc_A 205 YAIIDEVDSIL----------IDEARTPLIISG 227 (997)
T ss_dssp EEEETTHHHHT----------TSSTTSCEEEEE
T ss_pred eEEEechHHHH----------HhCCCCCeeeeC
Confidence 99999995321 112335588888
No 149
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.24 E-value=0.039 Score=58.24 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=28.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecc
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 795 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPS 795 (961)
.+++.|+.|.||| +.+...+..... .+.+|++..|.
T Consensus 21 l~v~~G~MgsGKT-----T~lL~~~~r~~~--~g~kvli~kp~ 56 (234)
T 2orv_A 21 IQVILGPMFSGKS-----TELMRRVRRFQI--AQYKCLVIKYA 56 (234)
T ss_dssp EEEEECCTTSCHH-----HHHHHHHHHHHT--TTCCEEEEEET
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHH--CCCeEEEEeec
Confidence 5789999999999 777777666554 48899998873
No 150
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.22 E-value=0.012 Score=60.07 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=31.7
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 729 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
|.+....+.+++++..++.. ..+..++|+|||||||| +++.+|...+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT------~la~~la~~~ 69 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT------LLAKAIAGEA 69 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHH------HHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHH------HHHHHHHHHc
Confidence 33444567777777665431 11345899999999999 7777777655
No 151
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.18 E-value=0.034 Score=62.55 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH-hCCCCeEEEEec
Q 002130 735 DSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSRILICAP 794 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk-~~p~~RILVcAP 794 (961)
|..-..++..+....+ ..+++|+|||||||| |++.+|...+. ..++.+++....
T Consensus 113 n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKT------tLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 113 NSFAYHAALEVAKHPGRYNPLFIYGGVGLGKT------HLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp THHHHHHHHHHHHSTTSSCCEEEECSSSSSHH------HHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred hHHHHHHHHHHHhCCCCCCeEEEECCCCCCHH------HHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4444444454444433 458999999999999 66677666553 344667766543
No 152
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.10 E-value=0.016 Score=61.94 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHhc----cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 735 N~eQr~AV~~ILs~----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.+.+.+...+.. .....++|+|||||||| +++.++.+.+
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT------~la~~l~~~~ 69 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKT------FVSKYIFNEI 69 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHH------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHH------HHHHHHHHHH
Confidence 56666666655543 22346899999999999 5555555544
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.09 E-value=0.017 Score=55.89 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHhccC-CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEG-QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
-.+.+.+.+...+.... ...++|+||+||||| +++..+...+.
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT------~l~~~~~~~~~ 70 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKT------SIARLLAKGLN 70 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHH------HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 36677777777775532 346899999999999 55555555443
No 154
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.02 E-value=0.016 Score=61.09 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHhc----cCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSF----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.+.+.+.+...+.. .....++|+||+||||| +++.++...+.
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKT------tl~~~l~~~~~ 70 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKT------AVVKFVLSKLH 70 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHH------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHH------HHHHHHHHHHH
Confidence 56777777777753 23447899999999999 55566555554
No 155
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.96 E-value=0.021 Score=61.14 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
++...+.+...+.....+.++++|||||||| |++.++...+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKT------tla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKT------STIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHH------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHH------HHHHHHHHHHc
Confidence 4555566666665433344899999999999 66666666554
No 156
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.96 E-value=0.01 Score=64.29 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=20.4
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..++||+|||||||| +++.+|.+.+
T Consensus 51 ~~~vll~GppGtGKT------~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKT------LLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHH------HHHHHHHHHT
T ss_pred CCeEEEECCCCCCHH------HHHHHHHHHc
Confidence 357899999999999 6777777655
No 157
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.88 E-value=0.028 Score=63.69 Aligned_cols=43 Identities=19% Similarity=0.076 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.+...+.+..+|.......+||+|||||||| ++++++.+.+..
T Consensus 185 r~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT------~la~~la~~l~~ 227 (468)
T 3pxg_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKT------AIAEGLAQQIIN 227 (468)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTH------HHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHhccCCCCeEEECCCCCCHH------HHHHHHHHHHHh
Confidence 5667777777886654456799999999999 778888777643
No 158
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.83 E-value=0.017 Score=62.98 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=30.9
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 729 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
|.+..-.+.+++++..++.. .....+||+|||||||| +++.+|...+
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT------~la~ala~~~ 108 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS------YLAKAVATEA 108 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHH------HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHH------HHHHHHHHHh
Confidence 44444456677777766521 11235899999999999 6777776655
No 159
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.78 E-value=0.023 Score=58.81 Aligned_cols=42 Identities=7% Similarity=-0.031 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
-++...+.+...+.....+.++|+||+||||| +++.++.+.+
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt------~la~~l~~~l 66 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKT------TSVHCLAHEL 66 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHH------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHH------HHHHHHHHHh
Confidence 35667777777776544445999999999999 5555555444
No 160
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.77 E-value=0.061 Score=56.93 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHhc-----cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~-----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
--+...++++...+.. ....++||+|||||||| +++.+|.+.+ ...-+-+.+........+...+.
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT------~la~~ia~~~---~~~~~~~~~~~~~~~~~~~~~~~ 102 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKT------TLANIISYEM---SANIKTTAAPMIEKSGDLAAILT 102 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHH------HHHHHHHHHT---TCCEEEEEGGGCCSHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHH------HHHHHHHHHh---CCCeEEecchhccchhHHHHHHH
Confidence 3467777777777653 22357899999999999 6666665432 23334444433333444444443
No 161
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.75 E-value=0.015 Score=61.75 Aligned_cols=38 Identities=11% Similarity=-0.076 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 736 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 736 ~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+....++...+... .+++|+|||||||| +++.++...+
T Consensus 33 ~~~~~~l~~~l~~~--~~vll~G~pGtGKT------~la~~la~~~ 70 (331)
T 2r44_A 33 KYMINRLLIGICTG--GHILLEGVPGLAKT------LSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHHT--CCEEEESCCCHHHH------HHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCCCcHH------HHHHHHHHHh
Confidence 44455555555432 37899999999999 6777776654
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.72 E-value=0.021 Score=62.15 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 729 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
|.+..-.+.+++++..++.. .....+||+|||||||| +++.+|...
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT------~la~aia~~ 140 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKT------LIGKCIASQ 140 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHH------HHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHH------HHHHHHHHH
Confidence 33334467788888776632 22346899999999999 666776553
No 163
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.69 E-value=0.023 Score=62.27 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 728 PYSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 728 ~~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.|.+..-...+++++..++.. .....+||+|||||||| +++.+|..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT------~la~aia~ 170 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKT------MLAKAVAA 170 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHH------HHHHHHHH
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHH------HHHHHHHH
Confidence 344445578888888877621 11346899999999999 66677654
No 164
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.67 E-value=0.019 Score=61.27 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHh---ccCC--CCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILS---FEGQ--SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 734 LN~eQr~AV~~ILs---~~~~--~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
-.+.+++++..++. .... ..+||+|||||||| +++.++.+.+.
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT------~la~~la~~l~ 95 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKT------AIAMGMAQALG 95 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHH------HHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHH------HHHHHHHHHhc
Confidence 35666666554442 2222 36899999999999 67777777664
No 165
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.60 E-value=0.043 Score=62.14 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=25.4
Q ss_pred HHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 740 SAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 740 ~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..+..++.......+||+|||||||| |++.+|.+.+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKT------tlAr~ia~~~ 74 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKT------TLAEVIARYA 74 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHH------HHHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHH------HHHHHHHHHh
Confidence 34555554433456899999999999 7777776654
No 166
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.58 E-value=0.02 Score=59.49 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=21.5
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.+++|+|||||||| +++.+|.+.+..
T Consensus 48 ~~~ll~G~~GtGKt------~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKT------ELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHH------HHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHH------HHHHHHHHHHcC
Confidence 36899999999999 777888777654
No 167
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.53 E-value=0.026 Score=63.52 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=32.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 728 PYSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 728 ~~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.|.+..-.+.+++++..++.. .....+||+|||||||| +++.+|...+
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT------~lA~aia~~~ 191 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKS------YLAKAVATEA 191 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHH------HHHHHHHHHC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHH------HHHHHHHHHc
Confidence 344444567788888876621 11245899999999999 6677766543
No 168
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.35 E-value=0.053 Score=52.22 Aligned_cols=41 Identities=5% Similarity=-0.121 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 733 KLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
..|.++..++..+ . ...++|+||+|+||| |++.+|...+..
T Consensus 22 g~n~~~~~~l~~~---~-g~~~~l~G~~G~GKT------tL~~~i~~~~~~ 62 (149)
T 2kjq_A 22 TENAELVYVLRHK---H-GQFIYVWGEEGAGKS------HLLQAWVAQALE 62 (149)
T ss_dssp CCTHHHHHHCCCC---C-CSEEEEESSSTTTTC------HHHHHHHHHHHT
T ss_pred CccHHHHHHHHhc---C-CCEEEEECCCCCCHH------HHHHHHHHHHHh
Confidence 5677777766665 2 236889999999999 666676665543
No 169
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.30 E-value=0.014 Score=61.86 Aligned_cols=23 Identities=13% Similarity=-0.126 Sum_probs=18.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
-+||+|||||||| +++++|...+
T Consensus 38 ~lLl~GppGtGKT------~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKS------FQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4688999999999 6777776655
No 170
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.19 E-value=0.046 Score=65.21 Aligned_cols=41 Identities=20% Similarity=0.096 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.+.+.+..+|.......+||+|||||||| ++|+++.+.+
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT------~la~~la~~l 225 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKT------AIAEGLAQQI 225 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTH------HHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHH------HHHHHHHHHH
Confidence 5777777888886654456899999999999 6777776655
No 171
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.12 E-value=0.025 Score=58.43 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=19.5
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
...+||+|||||||| +++.+|.+.+
T Consensus 64 ~~~vLl~G~~GtGKT------~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKT------ALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHH------HHHHHHHHHH
T ss_pred CeEEEEECCCCCcHH------HHHHHHHHHh
Confidence 346899999999999 6677766643
No 172
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.79 E-value=0.027 Score=58.68 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=22.6
Q ss_pred HHHHHHHHhcc-CCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 739 NSAVHQILSFE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 739 r~AV~~ILs~~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..+++..+... ...-+||+|||||||| +++.+++..+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKT------t~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKS------YFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHH------HHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHH------HHHHHHHHHh
Confidence 34445555431 1113799999999999 4555555555
No 173
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=93.77 E-value=0.011 Score=76.78 Aligned_cols=6 Identities=33% Similarity=0.683 Sum_probs=0.0
Q ss_pred ccCCCC
Q 002130 262 LAPLPP 267 (961)
Q Consensus 262 ~~~~~~ 267 (961)
.+|-+|
T Consensus 1710 ~~p~~p 1715 (1733)
T 1twf_A 1710 YSPGSP 1715 (1733)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 344444
No 174
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.72 E-value=0.027 Score=61.11 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=19.9
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..+++|+|||||||| +++.++.+.+
T Consensus 72 ~~~ill~Gp~GtGKT------~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKT------LMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHH------HHHHHHHHHT
T ss_pred CCCEEEECCCCCCHH------HHHHHHHHHh
Confidence 347899999999999 6777776654
No 175
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.53 E-value=0.036 Score=62.28 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHhc----c-CCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 733 KLDSDSNSAVHQILSF----E-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 733 ~LN~eQr~AV~~ILs~----~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
-..+++++++..++.. . ....+|++|||||||| +++.++.+.+.
T Consensus 40 iG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT------~la~ala~~l~ 88 (456)
T 2c9o_A 40 VGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKT------ALALAIAQELG 88 (456)
T ss_dssp ESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHH------HHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHH------HHHHHHHHHhC
Confidence 3466777766655532 1 1235899999999999 67777776654
No 176
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.41 E-value=0.077 Score=56.94 Aligned_cols=34 Identities=9% Similarity=-0.033 Sum_probs=22.9
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHH-hCCCCeEEEE
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR-RSPKSRILIC 792 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk-~~p~~RILVc 792 (961)
..++|+|||||||| +++.+|...+. . .+.+|+..
T Consensus 153 ~~lll~G~~GtGKT------~La~aia~~~~~~-~g~~v~~~ 187 (308)
T 2qgz_A 153 KGLYLYGDMGIGKS------YLLAAMAHELSEK-KGVSTTLL 187 (308)
T ss_dssp CEEEEECSTTSSHH------HHHHHHHHHHHHH-SCCCEEEE
T ss_pred ceEEEECCCCCCHH------HHHHHHHHHHHHh-cCCcEEEE
Confidence 47899999999999 44555554443 3 25566654
No 177
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.20 E-value=0.047 Score=62.60 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=31.1
Q ss_pred CCCCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 729 YSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
|.+..-...|++.+...+.. ..+..+||+|||||||| +++.+|..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT------~lAraia~ 260 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT------LIARAVAN 260 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHH------HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHH------HHHHHHHH
Confidence 33344567788887776642 22346899999999999 66777654
No 178
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.20 E-value=0.061 Score=54.83 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=30.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 728 PYSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 728 ~~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.|.+....+.++..++.+... .-+.-++|+|||||||| |++.+|...+
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKT------tl~~~i~~~~ 73 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT------HLARAVAGEA 73 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHH------HHHHHHHHHT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHH------HHHHHHHHHh
Confidence 344444566777777665431 01122799999999999 6777776654
No 179
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.19 E-value=0.058 Score=57.99 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHhc-----cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSF-----EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 735 N~eQr~AV~~ILs~-----~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+......+...+.. .....++|+|||||||| |++.+|...+
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKT------TLa~~ia~~l 75 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKT------TLAHIIASEL 75 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHH------HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHH------HHHHHHHHHh
Confidence 44555666655532 12246899999999999 7778877766
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.03 E-value=0.072 Score=53.07 Aligned_cols=48 Identities=8% Similarity=-0.077 Sum_probs=33.5
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
..++|.||||+||| +.+..++..+... +.+|++.+.... .+.+.+++.
T Consensus 24 ~~~~i~G~~GsGKT-----tl~~~~~~~~~~~--~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 24 NVVLLSGGPGTGKT-----IFSQQFLWNGLKM--GEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp CEEEEEECTTSSHH-----HHHHHHHHHHHHT--TCCEEEEESSSC-HHHHHHHHH
T ss_pred cEEEEECCCCCCHH-----HHHHHHHHHHHhc--CCeEEEEEccCC-HHHHHHHHH
Confidence 36899999999999 5556666665553 667777765443 456666665
No 181
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.81 E-value=0.2 Score=59.29 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhh
Q 002130 732 YKLDSDSNSAVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKD 809 (961)
Q Consensus 732 ~~LN~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~ 809 (961)
...|..|..|+..++.. .+....+|.|-+|+||| .+++.++.++ +..+||.|++...|..+...|...
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~-----~~~a~~~~~~-----~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKT-----FTVSNLIKEV-----NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHH-----HHHHHHHHHH-----CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHH-----HHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHHH
Confidence 46788999999987754 22234578999999999 8888777553 447999999999999999999987
Q ss_pred CCCCceEecc
Q 002130 810 IPASEMFRAN 819 (961)
Q Consensus 810 l~~~~ilRV~ 819 (961)
+++..+..+-
T Consensus 81 ~~~~~v~~fp 90 (661)
T 2d7d_A 81 FPNNAVEYFV 90 (661)
T ss_dssp CTTSEEEEEC
T ss_pred cCCCcEEEcc
Confidence 7665554443
No 182
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.72 E-value=0.15 Score=61.81 Aligned_cols=43 Identities=19% Similarity=0.065 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.+.....+..+|.......++|+|||||||| ++++++.+.+..
T Consensus 175 r~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT------~la~~la~~l~~ 217 (854)
T 1qvr_A 175 RDEEIRRVIQILLRRTKNNPVLIGEPGVGKT------AIVEGLAQRIVK 217 (854)
T ss_dssp CHHHHHHHHHHHHCSSCCCCEEEECTTSCHH------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHH------HHHHHHHHHHhc
Confidence 4566666777776654446799999999999 677777776643
No 183
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.70 E-value=0.09 Score=62.47 Aligned_cols=41 Identities=15% Similarity=0.022 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.+.+.+..+|.......+||+|||||||| ++++++.+.+
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT------~la~~la~~l 231 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKT------AIAEGLAWRI 231 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHH------HHHHHHHHHH
Confidence 5667777888887654556899999999999 6677766655
No 184
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.61 E-value=0.026 Score=65.03 Aligned_cols=36 Identities=8% Similarity=-0.107 Sum_probs=24.2
Q ss_pred HHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 738 SNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 738 Qr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
-.+++..++... .++||+|||||||| +++.+|...+
T Consensus 30 ~i~~l~~al~~~--~~VLL~GpPGtGKT------~LAraLa~~l 65 (500)
T 3nbx_X 30 AIRLCLLAALSG--ESVFLLGPPGIAKS------LIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHHHT--CEEEEECCSSSSHH------HHHHHGGGGB
T ss_pred HHHHHHHHHhcC--CeeEeecCchHHHH------HHHHHHHHHH
Confidence 334444444332 37899999999999 6777776544
No 185
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.30 E-value=0.094 Score=54.46 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=32.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 728 PYSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 728 ~~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.|.+....++++..++.+... .-..-++|+|||||||| |++.+|...+.
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKT------tl~~~i~~~~~ 98 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT------HLARAVAGEAR 98 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHH------HHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHH------HHHHHHHHHcC
Confidence 344445567777777766532 01123799999999999 67777776543
No 186
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.27 E-value=0.075 Score=56.95 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=29.5
Q ss_pred CCCCHHH-HHHHHHHHhcc-C-CCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 732 YKLDSDS-NSAVHQILSFE-G-QSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 732 ~~LN~eQ-r~AV~~ILs~~-~-~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
...|..+ ..++...|.+. . ..-++|+|||||||| .++.+|...
T Consensus 82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt------~~a~ala~~ 127 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKT------NIAEAIAHT 127 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHH------HHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHH------HHHHHHHhh
Confidence 4578887 44566777654 2 224899999999999 556666553
No 187
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.17 E-value=0.044 Score=57.77 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=22.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
++|+|||||||| |++.+|...+. ...|.+..
T Consensus 47 vlL~Gp~GtGKT------tLakala~~~~---~~~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKT------LLAKAVANESG---LNFISVKG 77 (274)
T ss_dssp EEEESSTTSCHH------HHHHHHHHHTT---CEEEEEET
T ss_pred EEEECCCCCcHH------HHHHHHHHHcC---CCEEEEEc
Confidence 799999999999 77777776543 23455543
No 188
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.74 E-value=0.11 Score=55.89 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=25.0
Q ss_pred HHHHHHHHHHH-h----c--cCCCCceE--eccCCCCCCccchHHHHHHHHHHHH
Q 002130 736 SDSNSAVHQIL-S----F--EGQSPYLL--EGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 736 ~eQr~AV~~IL-s----~--~~~~P~LI--~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+.+.+.+...| . . .....++| +||+||||| +++..+.+.+
T Consensus 28 ~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT------~L~~~~~~~~ 76 (412)
T 1w5s_A 28 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKT------TLAKFTVKRV 76 (412)
T ss_dssp CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHH------HHHHHHHHHH
Confidence 45566666655 3 2 22346788 999999999 4445544444
No 189
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.68 E-value=0.075 Score=61.99 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 736 SDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 736 ~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
..-.+.+...+... .+++|+|||||||| |++.+|..++..
T Consensus 47 ~~~l~~l~~~i~~g--~~vll~Gp~GtGKT------tlar~ia~~l~~ 86 (604)
T 3k1j_A 47 EHAVEVIKTAANQK--RHVLLIGEPGTGKS------MLGQAMAELLPT 86 (604)
T ss_dssp HHHHHHHHHHHHTT--CCEEEECCTTSSHH------HHHHHHHHTSCC
T ss_pred hhhHhhccccccCC--CEEEEEeCCCCCHH------HHHHHHhccCCc
Confidence 33344444444332 37899999999999 788888877654
No 190
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=91.37 E-value=0.06 Score=54.74 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=23.1
Q ss_pred CCCccEEEEecCCCCCh--------HHHHHHHhccccCCCeEEEEeCC
Q 002130 874 AGHFSHIFLIDASSATE--------PETMIVLGNLANENTRVIVTGAP 913 (961)
Q Consensus 874 ~g~FdhVIIDEASQAtE--------PEaLIPLa~LA~~~trVVLaGDp 913 (961)
.+.-.+||||||..... +..+--|.......-.|||+|-+
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 34567899999965411 12222222222234589999987
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.31 E-value=0.12 Score=59.26 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=31.9
Q ss_pred CCCCCCCHHHHHHHHHHHhc------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 729 YSNYKLDSDSNSAVHQILSF------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
|.+..-.+++++.++.++.. ..+..++|+|||||||| +++.+|....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT------~Laraia~~~ 73 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKT------LLARAVAGEA 73 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHH------HHHHHHHHHc
Confidence 33445567777777776532 11335899999999999 6777776543
No 192
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.22 E-value=0.24 Score=65.61 Aligned_cols=58 Identities=9% Similarity=-0.047 Sum_probs=37.5
Q ss_pred HHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 002130 742 VHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 742 V~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL 806 (961)
+..+|. + ....-++|+|||||||| +....++.+..+ .+.+++..+..+.-...+++++
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT-----~LA~ala~ea~~--~G~~v~Fi~~e~~~~~l~a~~~ 1475 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKT-----TLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARKL 1475 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHH-----HHHHHHHHHHHT--TTCCEEEECTTSCCCHHHHHHT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHHH--cCCcEEEEEcccccCHHHHHHc
Confidence 666776 3 22336899999999999 444455554444 3778888877765444444444
No 193
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.17 E-value=0.23 Score=47.92 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=28.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE-EecchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI-CAPWNRTCDKLMECL 806 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV-cAPSNsAaD~LleRL 806 (961)
++|.|++|+||| |+++.+.+.+... +..++. ..+........+..+
T Consensus 3 I~l~G~~GsGKs------T~~~~L~~~l~~~-g~~v~~~~~~~~~~~g~~~~~~ 49 (197)
T 2z0h_A 3 ITFEGIDGSGKS------TQIQLLAQYLEKR-GKKVILKREPGGTETGEKIRKI 49 (197)
T ss_dssp EEEECSTTSSHH------HHHHHHHHHHHHC-CC-EEEEESSCSSHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHHHHC-CCeEEEeeCCCCCcHHHHHHHH
Confidence 579999999999 7778877777653 444433 334443333333333
No 194
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.13 E-value=0.15 Score=50.78 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=34.0
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..++|.|+||+||| ....+++...... .+.++++++-... .+.+++++..
T Consensus 31 ~l~~i~G~pG~GKT-----~l~l~~~~~~~~~-~~~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 31 TTVLLTGGTGTGKT-----TFAAQFIYKGAEE-YGEPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp CEEEEECCTTSSHH-----HHHHHHHHHHHHH-HCCCEEEEESSSC-HHHHHHHHHT
T ss_pred eEEEEEeCCCCCHH-----HHHHHHHHHHHHh-cCCCceeecccCC-HHHHHHHHHH
Confidence 36899999999999 5555555543332 3667888876654 4566666654
No 195
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.99 E-value=0.28 Score=52.62 Aligned_cols=59 Identities=3% Similarity=-0.060 Sum_probs=40.2
Q ss_pred HHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 742 VHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 742 V~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+..++.+ ..-..++|.|+||+||| +.+..++..+... +.+||+.+-- ...+.+..|+..
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKT-----tl~l~ia~~~a~~--g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKT-----AFALKQAKNMSDN--DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHH-----HHHHHHHHHHHTT--TCEEEEEESS-SCHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEECC-CCHHHHHHHHHH
Confidence 4455543 22237899999999999 5555555555543 5789988876 456677777765
No 196
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.81 E-value=0.23 Score=48.71 Aligned_cols=59 Identities=7% Similarity=-0.066 Sum_probs=34.4
Q ss_pred HHHHHHh-c-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 741 AVHQILS-F-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 741 AV~~ILs-~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
++..++. . .....++|.||+|+||| +++..++..+... +.+|++...... .+.+..++.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKT-----tl~~~l~~~~~~~--~~~v~~~~~~~~-~~~~~~~~~ 71 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKT-----IFSLHFIAKGLRD--GDPCIYVTTEES-RDSIIRQAK 71 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHH-----HHHHHHHHHHHHH--TCCEEEEESSSC-HHHHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEEcccC-HHHHHHHHH
Confidence 4556664 2 22236789999999999 4444333344433 557777665443 445555554
No 197
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.48 E-value=0.14 Score=56.62 Aligned_cols=61 Identities=16% Similarity=0.077 Sum_probs=39.2
Q ss_pred HHHHHHh----cc-CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 002130 741 AVHQILS----FE-GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 741 AV~~ILs----~~-~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL 806 (961)
.+..+|. +- ..+.++|+||||+||| +....++.+..+...+.++|....-+......+++|
T Consensus 13 ~LD~~LGg~~~GGl~~GiteI~G~pGsGKT-----tL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~l 78 (333)
T 3io5_A 13 MMNIALSGEITGGMQSGLLILAGPSKSFKS-----NFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSM 78 (333)
T ss_dssp HHHHHHHSSTTCCBCSEEEEEEESSSSSHH-----HHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHT
T ss_pred HHHHHhCCCCCCCCcCCeEEEECCCCCCHH-----HHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHh
Confidence 4556676 31 1235899999999999 666677776666444667777766555433344444
No 198
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.32 E-value=0.3 Score=51.06 Aligned_cols=60 Identities=5% Similarity=-0.085 Sum_probs=36.6
Q ss_pred HHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 742 VHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 742 V~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+..++.. ..-..++|.||||+||| |++..|...+....+.+|++...... ...+..|+..
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKT------Tl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~~ 85 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKS------TFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIG 85 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHH------HHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHH------HHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHHH
Confidence 4555533 22236899999999999 45555555555434558887765443 3455566554
No 199
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.30 E-value=0.16 Score=58.04 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=19.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.-+|++|||||||| +++.++...+
T Consensus 51 ~~iLl~GppGtGKT------~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKT------EIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHH------HHHHHHHHHT
T ss_pred ceEEEEcCCCCCHH------HHHHHHHHHc
Confidence 35899999999999 6777776655
No 200
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.12 E-value=0.24 Score=57.23 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=32.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhc---c---------CCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 728 PYSNYKLDSDSNSAVHQILSF---E---------GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 728 ~~~n~~LN~eQr~AV~~ILs~---~---------~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.|.+....++++..++.++.. . -+.-++|+|||||||| +++.+|...+
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKT------tLaraIa~~~ 88 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT------HLARAVAGEA 88 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHH------HHHHHHHHHT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHH------HHHHHHHHHh
Confidence 344455577888888776532 0 1223799999999999 7777777654
No 201
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.06 E-value=0.95 Score=48.32 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=22.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.+.|.|+.|.||| +++. .+..++.. .+.+|++..
T Consensus 100 ~i~i~g~~G~GKT-----T~~~-~la~~~~~-~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKT-----TTAA-KLALYYKG-KGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHH-----HHHH-HHHHHHHH-TTCCEEEEE
T ss_pred EEEEECCCCCCHH-----HHHH-HHHHHHHH-cCCeEEEec
Confidence 3567799999999 4444 44445554 366777654
No 202
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.49 E-value=0.21 Score=60.94 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=32.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 727 CPYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 727 ~~~~n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
..|.+...-++.+++++.++.. ..+.-+|++|||||||| .++.+|..
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT------~lAkaiA~ 533 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT------LLAKAIAN 533 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHH------HHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCch------HHHHHHHH
Confidence 4566666667888888776542 01223799999999999 55666554
No 203
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=89.39 E-value=0.16 Score=63.95 Aligned_cols=40 Identities=15% Similarity=0.395 Sum_probs=31.8
Q ss_pred CccEEEEecCCCCChHHHHHHHhcccc--CCCeEEEEeCCCCC
Q 002130 876 HFSHIFLIDASSATEPETMIVLGNLAN--ENTRVIVTGAPHNS 916 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPEaLIPLa~LA~--~~trVVLaGDpkQL 916 (961)
.|+||+|||+ |-|.|..+--|..|+. ....+++|||++|-
T Consensus 377 r~~~ilVDEf-QDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQS 418 (1180)
T 1w36_B 377 RFPVAMIDEF-QDTDPQQYRIFRRIWHHQPETALLLIGDPKQA 418 (1180)
T ss_dssp HCSEEEECSG-GGCCHHHHHHHHHHHTTCTTCEEEEEECGGGC
T ss_pred CCCEEEEECC-ccCCHHHHHHHHHHHcCCCCCeEEEEECCccc
Confidence 6999999999 7788866665655553 35789999999995
No 204
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.39 E-value=0.23 Score=54.99 Aligned_cols=60 Identities=7% Similarity=-0.101 Sum_probs=36.4
Q ss_pred HHHHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 002130 740 SAVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 740 ~AV~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL 806 (961)
..+..+|. + ..-..++|.||||+||| +.+..++..+.. .+.+|+.....+..-...++++
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKS-----TLal~la~~~~~--~gg~VlyId~E~s~~~~ra~rl 109 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKT-----TLALHAIAEAQK--MGGVAAFIDAEHALDPVYAKNL 109 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHH-----HHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHH-----HHHHHHHHHHHh--cCCeEEEEecccccchHHHHHc
Confidence 34667776 3 22236899999999999 544444444333 2566766665554444455555
No 205
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.26 E-value=0.34 Score=57.81 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=20.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
++||+|||||||| +++.+|.+.+..
T Consensus 523 ~~Ll~Gp~GtGKT------~lA~ala~~l~~ 547 (758)
T 3pxi_A 523 SFIFLGPTGVGKT------ELARALAESIFG 547 (758)
T ss_dssp EEEEESCTTSSHH------HHHHHHHHHHHS
T ss_pred EEEEECCCCCCHH------HHHHHHHHHhcC
Confidence 4899999999999 677777776643
No 206
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.91 E-value=0.16 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=17.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.||+|+||| |++..+.+.+
T Consensus 3 ~i~l~G~~GsGKs------T~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKS------TVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 3689999999999 6777666544
No 207
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.75 E-value=0.22 Score=57.63 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=20.8
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
..++|.|||||||| |++.+|...+.
T Consensus 109 ~~vll~Gp~GtGKT------tlar~ia~~l~ 133 (543)
T 3m6a_A 109 PILCLAGPPGVGKT------SLAKSIAKSLG 133 (543)
T ss_dssp CEEEEESSSSSSHH------HHHHHHHHHHT
T ss_pred CEEEEECCCCCCHH------HHHHHHHHhcC
Confidence 36899999999999 77888877764
No 208
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.74 E-value=0.26 Score=51.77 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=24.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
-+++.|+||+||| ++++....++.+. +.+|+++
T Consensus 8 ~I~~~~kgGvGKT-----t~a~~la~~l~~~--G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKT-----YAMLQAAHAQLRQ--GVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHH-----HHHHHHHHHHHHT--TCCEEEE
T ss_pred EEEEECCCCCcHH-----HHHHHHHHHHHHC--CCCEEEE
Confidence 3688999999999 7766666666654 6677544
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.54 E-value=0.15 Score=61.94 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=31.1
Q ss_pred CCCCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 729 YSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
|.+..-.+.|++.+..++.. .....++|+|||||||| |++.+|...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKT------tLarala~~ 261 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT------LIARAVANE 261 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHH------HHHHHHHHT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHH------HHHHHHHHH
Confidence 33344467777777776642 12235899999999999 677776654
No 210
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.53 E-value=0.13 Score=62.58 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=16.4
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
+|++|||||||| +|+.+|..
T Consensus 241 ILL~GPPGTGKT------~LAraiA~ 260 (806)
T 3cf2_A 241 ILLYGPPGTGKT------LIARAVAN 260 (806)
T ss_dssp EEEECCTTSCHH------HHHHHHHT
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 799999999999 66666553
No 211
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=88.50 E-value=0.19 Score=63.52 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=40.3
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccccC---CCeEEEEeCCCCCCccccChHHHhcCCChhHHHHHHc
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLANE---NTRVIVTGAPHNSPSRVRSDIARKNGLKMSYFERLCL 940 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~~---~trVVLaGDpkQLpPvV~S~~A~k~GL~~SLFERL~~ 940 (961)
..|+||+|||+ |-+.|..+--|..|+.. ...+++|||++|- |+.- .|-+..+|.++.+
T Consensus 399 ~~~~~IlVDEf-QDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~Qs---IY~F----RgAd~~~f~~~~~ 459 (1232)
T 3u4q_A 399 EQFHEVLVDEY-QDTNLVQESILQLVTSGPEETGNLFMVGDVKQS---IYRF----RLAEPLLFLSKYK 459 (1232)
T ss_dssp HHCSEEEESSG-GGCCHHHHHHHHHHSCSCTTSSCEEEEECGGGC---CCTT----TTCCTHHHHHHHH
T ss_pred hCCCEEEEEcc-ccCCHHHHHHHHHHhcCCCCCCcEEEEeCchHH---hHhc----cCCCHHHHHHHHH
Confidence 36999999999 77777666666656654 5789999999994 2221 2445666665544
No 212
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.39 E-value=0.29 Score=53.69 Aligned_cols=50 Identities=12% Similarity=0.002 Sum_probs=31.9
Q ss_pred HHHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchH
Q 002130 741 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNR 797 (961)
Q Consensus 741 AV~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNs 797 (961)
.+..+|. + ..-..++|.||||+||| +.+..++..+.+. +.++++..-.+.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKT-----tLal~la~~~~~~--g~~vlyi~~E~~ 100 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKT-----TVALHAVANAQAA--GGIAAFIDAEHA 100 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHH-----HHHHHHHHHHHHT--TCCEEEEESSCC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHHhC--CCeEEEEECCCC
Confidence 3556676 3 22236899999999999 5555555555543 566666655443
No 213
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.28 E-value=0.17 Score=47.94 Aligned_cols=21 Identities=10% Similarity=-0.111 Sum_probs=16.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.|+||+||| |++..+.+
T Consensus 4 ~I~i~G~~GsGKS------T~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKS------TWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHH------HHHHHHHH
T ss_pred EEEEecCCCCCHH------HHHHHHHh
Confidence 3689999999999 66666554
No 214
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.20 E-value=0.44 Score=49.52 Aligned_cols=48 Identities=8% Similarity=-0.013 Sum_probs=29.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhC---------CCCeEEEEecchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS---------PKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~---------p~~RILVcAPSNsAaD~LleRL~ 807 (961)
.++|.||+|+||| |++..+...+... .+.+|++.+..+.. +.+..|+.
T Consensus 32 i~~i~G~~GsGKT------tl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~ 88 (279)
T 1nlf_A 32 VGALVSPGGAGKS------MLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLH 88 (279)
T ss_dssp EEEEEESTTSSHH------HHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHH
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHH
Confidence 6899999999999 4444444344431 13567766655543 55555554
No 215
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.05 E-value=0.31 Score=53.99 Aligned_cols=58 Identities=9% Similarity=-0.040 Sum_probs=36.5
Q ss_pred HHHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHH
Q 002130 741 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMEC 805 (961)
Q Consensus 741 AV~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleR 805 (961)
.+..+|. + .....++|.|+||+||| +....++..+.+. +.+|++..........++++
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKT-----tlal~la~~~~~~--g~~vlyi~~E~s~~~~~a~~ 121 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKT-----TLALAIVAQAQKA--GGTCAFIDAEHALDPVYARA 121 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHH-----HHHHHHHHHHHHT--TCCEEEEESSCCCCHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChH-----HHHHHHHHHHHHC--CCeEEEEECCCChhHHHHHH
Confidence 4566676 2 22336899999999999 6655666655543 56777777665443333333
No 216
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.89 E-value=0.64 Score=52.23 Aligned_cols=60 Identities=5% Similarity=0.046 Sum_probs=39.9
Q ss_pred HHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 741 AVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 741 AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
.+..++.+ .....++|.|+||+||| +.+..++..+... .+.+|++.+....+ +.+..|+.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKT-----tl~l~ia~~~~~~-~g~~Vl~~s~E~s~-~~l~~r~~ 252 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKT-----AFALNIAQNVATK-TNENVAIFSLEMSA-QQLVMRML 252 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHH-----HHHHHHHHHHHHH-SSCCEEEEESSSCH-HHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHH-----HHHHHHHHHHHHh-CCCcEEEEECCCCH-HHHHHHHH
Confidence 35566643 22237899999999999 5555555555443 36689998876544 56777765
No 217
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.85 E-value=0.2 Score=47.81 Aligned_cols=33 Identities=15% Similarity=-0.075 Sum_probs=23.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.++|.|+||+||| |++..+.+.+.. .+..+.+.
T Consensus 3 ~I~i~G~~GsGKs------T~~~~L~~~l~~-~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKS------TVLAKVKEILDN-QGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHH------HHHHHHHHHHHT-TTCCEEEE
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHHh-cCceEEEE
Confidence 3689999999999 777777776653 23344333
No 218
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.76 E-value=0.44 Score=46.28 Aligned_cols=25 Identities=8% Similarity=-0.175 Sum_probs=19.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.++|.|+||+||| |++..+.+.+..
T Consensus 6 ~I~i~G~~GsGKs------T~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKS------SQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHHhh
Confidence 4689999999999 777777766653
No 219
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.62 E-value=0.36 Score=53.22 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=31.1
Q ss_pred HHHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecch
Q 002130 741 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWN 796 (961)
Q Consensus 741 AV~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSN 796 (961)
.+..+|. + .....++|.|+||+||| +....++..+.+. +.++++.+-.+
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKT-----tLal~la~~~~~~--g~~vlyid~E~ 101 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKT-----TLTLQVIAAAQRE--GKTCAFIDAEH 101 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHH-----HHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 3555665 2 22346899999999999 5555555555543 55676665544
No 220
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.35 E-value=0.67 Score=44.34 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=21.9
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 791 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV 791 (961)
++|.|++|+||| |++..+.+.+... +..++.
T Consensus 3 I~l~G~~GsGKs------T~~~~L~~~l~~~-g~~~i~ 33 (195)
T 2pbr_A 3 IAFEGIDGSGKT------TQAKKLYEYLKQK-GYFVSL 33 (195)
T ss_dssp EEEECSTTSCHH------HHHHHHHHHHHHT-TCCEEE
T ss_pred EEEECCCCCCHH------HHHHHHHHHHHHC-CCeEEE
Confidence 579999999999 7777777666432 444443
No 221
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.20 E-value=0.57 Score=52.81 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 731 NYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 731 n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
+..+...+..++..++... ...++|.||.|+||| + +..++..++.. ...+|++.
T Consensus 148 ~Lg~~~~~~~~L~~l~~~~-ggii~I~GpnGSGKT-----T-lL~allg~l~~-~~g~I~~~ 201 (418)
T 1p9r_A 148 SLGMTAHNHDNFRRLIKRP-HGIILVTGPTGSGKS-----T-TLYAGLQELNS-SERNILTV 201 (418)
T ss_dssp GSCCCHHHHHHHHHHHTSS-SEEEEEECSTTSCHH-----H-HHHHHHHHHCC-TTSCEEEE
T ss_pred HcCCCHHHHHHHHHHHHhc-CCeEEEECCCCCCHH-----H-HHHHHHhhcCC-CCCEEEEe
Confidence 3456788888999886532 346899999999999 4 44556666643 24566654
No 222
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.11 E-value=0.19 Score=46.65 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=15.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAV 777 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaI 777 (961)
.++|.||||+||| |++..+
T Consensus 3 ~I~l~G~~GsGKs------T~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKS------EFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHH------HHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHH
Confidence 4689999999999 666665
No 223
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.11 E-value=0.78 Score=47.72 Aligned_cols=29 Identities=14% Similarity=-0.015 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCC
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFV 765 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKT 765 (961)
-+.+.+.+...+... ..++|.||+|+|||
T Consensus 17 R~~el~~L~~~l~~~--~~v~i~G~~G~GKT 45 (350)
T 2qen_A 17 REEESRKLEESLENY--PLTLLLGIRRVGKS 45 (350)
T ss_dssp CHHHHHHHHHHHHHC--SEEEEECCTTSSHH
T ss_pred hHHHHHHHHHHHhcC--CeEEEECCCcCCHH
Confidence 355677777777542 46899999999999
No 224
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.03 E-value=0.22 Score=47.47 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=17.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
.++|.|++|+||| |++.++.+.
T Consensus 5 ~i~l~G~~GsGKS------T~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKS------GIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHh
Confidence 4689999999999 666665543
No 225
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.94 E-value=0.25 Score=47.49 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=18.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.||+|+||| |++.++.+.+
T Consensus 7 ~i~l~G~~GsGKs------t~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKT------SVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4689999999999 6777666544
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.90 E-value=0.58 Score=45.75 Aligned_cols=45 Identities=7% Similarity=-0.022 Sum_probs=27.4
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecc
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW 795 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPS 795 (961)
++..++.+ .....++|.||+|+||| |++..+.. . .+.+|++.+-.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKT------tl~~~l~~--~--~~~~v~~i~~~ 54 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKT------TLALQTGL--L--SGKKVAYVDTE 54 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHH------HHHHHHHH--H--HCSEEEEEESS
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHH------HHHHHHHH--H--cCCcEEEEECC
Confidence 56666652 22236899999999999 44444433 3 25566665543
No 227
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.89 E-value=0.31 Score=59.11 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=21.0
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.+++|+|||||||| +++.+|.+.+..
T Consensus 589 ~~vLl~Gp~GtGKT------~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKT------ELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHH------HHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHhcC
Confidence 36899999999999 677787776643
No 228
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.85 E-value=0.25 Score=47.16 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=19.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.++|.|+||+||| |++..+.+.+.
T Consensus 5 ~I~i~G~~GsGKs------T~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGST------TSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHH
Confidence 4689999999999 77777766554
No 229
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=86.77 E-value=0.31 Score=57.91 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+||+|||||||| +++.++.+.+
T Consensus 490 ~~ll~G~~GtGKT------~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKT------EVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCcHH------HHHHHHHHHh
Confidence 5899999999999 6677777665
No 230
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.74 E-value=0.38 Score=46.57 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=23.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.++|.|++|+||| |++..+...+.. .+.++.+.
T Consensus 15 ~i~l~G~~GsGKs------T~~~~L~~~l~~-~~~~~~~~ 47 (186)
T 2yvu_A 15 VVWLTGLPGSGKT------TIATRLADLLQK-EGYRVEVL 47 (186)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHHHH-TTCCEEEE
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHHHh-cCCeEEEe
Confidence 5689999999999 677777766654 34455443
No 231
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.65 E-value=0.29 Score=47.10 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=18.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++.++.+.+
T Consensus 13 ~i~i~G~~GsGKs------t~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKT------TLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHH------HHHHHHHHHH
T ss_pred eEEEEeCCCCCHH------HHHHHHHHHh
Confidence 5789999999999 6666665544
No 232
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.48 E-value=0.82 Score=51.24 Aligned_cols=61 Identities=8% Similarity=-0.043 Sum_probs=40.3
Q ss_pred HHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 741 AVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 741 AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.+..++++ .....++|.|+||+||| +.+..++..+... .+.+||+.+-... .+.+..|+..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT-----~lal~ia~~~a~~-~g~~vl~~slE~~-~~~l~~R~~~ 250 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKT-----AFALTIAQNAALK-EGVGVGIYSLEMP-AAQLTLRMMC 250 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHH-----HHHHHHHHHHHHT-TCCCEEEEESSSC-HHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHH-----HHHHHHHHHHHHh-CCCeEEEEECCCC-HHHHHHHHHH
Confidence 35566643 22237899999999999 5555555555442 3678998877654 4567777654
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.48 E-value=0.3 Score=59.17 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=31.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-------------cCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 728 PYSNYKLDSDSNSAVHQILSF-------------EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 728 ~~~n~~LN~eQr~AV~~ILs~-------------~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.|.+...-+..++.+..++.. .....++|+|||||||| +++.+|...+.
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT------~Lakala~~~~ 536 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT------LLAKAIANECQ 536 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHH------HHHHHHHHHHT
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHH------HHHHHHHHHhC
Confidence 344333445566666655531 11235799999999999 77888877664
No 234
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=86.31 E-value=0.3 Score=48.18 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=19.2
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..++|.||+|+||| |++.++...+
T Consensus 30 ~~i~l~G~~GsGKS------Tl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKT------TIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHH------HHHHHHHHHH
T ss_pred cEEEEECCCCCCHH------HHHHHHHHhh
Confidence 35789999999999 7777776655
No 235
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.29 E-value=0.2 Score=58.71 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=17.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
++||.|||||||| +++.+|...
T Consensus 329 ~vLL~GppGtGKT------~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKS------QMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHH------HHHHSSSTT
T ss_pred ceEEECCCchHHH------HHHHHHHHh
Confidence 7999999999999 566665543
No 236
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.05 E-value=0.25 Score=46.86 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=18.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.||+|+||| |++.++...+
T Consensus 6 ~i~l~G~~GsGKS------Tl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKS------TIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHH------HHHHHHHHHT
T ss_pred eEEEECCCCCCHH------HHHHHHHHHh
Confidence 4789999999999 6777766544
No 237
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.88 E-value=0.31 Score=46.79 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=18.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++.++.+.+
T Consensus 6 ~i~i~G~~GsGKs------Tla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKS------TLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHH------HHHHHHHHHH
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHc
Confidence 3689999999999 7777766544
No 238
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.82 E-value=0.47 Score=50.81 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=24.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.++|.||.|+||| +++..+.. .+....+.+|++++
T Consensus 107 vi~lvG~~GsGKT-----Tl~~~LA~-~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKT-----TTLAKLAA-ISMLEKHKKIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHH-----HHHHHHHH-HHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCHH-----HHHHHHHH-HHHHhcCCEEEEEe
Confidence 5788999999999 55555544 44433467777765
No 239
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=85.70 E-value=0.31 Score=48.03 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=18.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.||+|+||| |++.++.+.+
T Consensus 27 ~i~l~G~~GsGKs------Tl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKT------TLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHH
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHc
Confidence 5789999999999 6777776655
No 240
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.48 E-value=0.31 Score=46.81 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=26.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
.++|.|+||+||| |++..+.+.+ +.. .++ .|.+.+.+..
T Consensus 7 ~I~l~G~~GsGKS------T~~~~L~~~l----~~~-~i~------~D~~~~~~~~ 45 (193)
T 2rhm_A 7 LIIVTGHPATGKT------TLSQALATGL----RLP-LLS------KDAFKEVMFD 45 (193)
T ss_dssp EEEEEESTTSSHH------HHHHHHHHHH----TCC-EEE------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHc----CCe-Eec------HHHHHHHHHH
Confidence 5689999999999 6666665544 222 233 4777776654
No 241
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=85.45 E-value=0.7 Score=50.26 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=24.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
..++|.|+||+||| +++..++..+.. .+.+|++..-
T Consensus 80 ~~I~i~G~~G~GKS-----Tl~~~L~~~l~~--~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKS-----TAIEALGMHLIE--RGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHH-----HHHHHHHHHHHT--TTCCEEEEEE
T ss_pred eEEEEECCCCCCHH-----HHHHHHHHHHHh--CCCceEEEec
Confidence 35688999999999 555555554433 3677777653
No 242
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.29 E-value=0.46 Score=49.47 Aligned_cols=26 Identities=12% Similarity=-0.046 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhccCCCCceEeccCCCCCC
Q 002130 736 SDSNSAVHQILSFEGQSPYLLEGPLCNNFV 765 (961)
Q Consensus 736 ~eQr~AV~~ILs~~~~~P~LI~GPPGTGKT 765 (961)
+.+.+.+.. +.. ..++|.||+|+|||
T Consensus 19 ~~el~~L~~-l~~---~~v~i~G~~G~GKT 44 (357)
T 2fna_A 19 EKEIEKLKG-LRA---PITLVLGLRRTGKS 44 (357)
T ss_dssp HHHHHHHHH-TCS---SEEEEEESTTSSHH
T ss_pred HHHHHHHHH-hcC---CcEEEECCCCCCHH
Confidence 556667777 654 36899999999999
No 243
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.27 E-value=0.6 Score=52.84 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=25.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.++|.|++|+||| ++++.++..+.+. +.+|++++
T Consensus 101 vI~ivG~~GvGKT-----Tla~~La~~l~~~--G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKT-----TTAAKLARYIQKR--GLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTT-----HHHHHHHHHHHHH--HCCEEEEC
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEe
Confidence 5679999999999 7776666665544 66776654
No 244
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=85.02 E-value=0.98 Score=44.09 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=22.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI 789 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RI 789 (961)
.++|.|++|+||| |++..+.+.+.. .+..+
T Consensus 11 ~I~l~G~~GsGKs------T~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 11 LIVLEGVDRAGKS------TQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp EEEEEESTTSSHH------HHHHHHHHHHHH-TTCCE
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHHH-cCCcE
Confidence 5789999999999 777777766654 24444
No 245
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.96 E-value=0.59 Score=46.41 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=17.5
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCC
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFV 765 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKT 765 (961)
.+..+|.+ ..-..++|.||+|+|||
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKT 38 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKT 38 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHH
Confidence 35556643 22236899999999999
No 246
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.95 E-value=0.53 Score=49.96 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=16.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.||||+||| |++..+..
T Consensus 35 livl~G~sGsGKS------Tla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKT------SLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 5789999999999 66666543
No 247
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.81 E-value=0.36 Score=49.15 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=17.5
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+|.||||+||+ |+++.+.+-+
T Consensus 3 Iil~GpPGsGKg------Tqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKG------TQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHH------HHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHH
Confidence 578999999999 7777766544
No 248
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=84.69 E-value=0.38 Score=45.98 Aligned_cols=23 Identities=4% Similarity=-0.132 Sum_probs=17.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 5 ~I~l~G~~GsGKs------T~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKG------TQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4689999999999 6666655433
No 249
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=84.69 E-value=0.36 Score=46.06 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=13.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
.++|.|+||+||| |+++.+.+.
T Consensus 7 ~I~l~G~~GsGKS------T~a~~La~~ 28 (183)
T 2vli_A 7 IIWINGPFGVGKT------HTAHTLHER 28 (183)
T ss_dssp EEEEECCC----C------HHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHh
Confidence 4689999999999 666666543
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=84.68 E-value=0.38 Score=47.17 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=18.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|++|+||| |++..+.+.+
T Consensus 20 ~I~l~G~~GsGKS------Tla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKS------SVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 5789999999999 6777666544
No 251
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=84.68 E-value=0.59 Score=53.00 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=35.3
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
..++|.|+||+||| +.+..++..+... .+.+||+.+--..+ +.++.|+..
T Consensus 243 ~l~li~G~pG~GKT-----~lal~~a~~~a~~-~g~~vl~~s~E~s~-~~l~~r~~~ 292 (503)
T 1q57_A 243 EVIMVTSGSGMVMS-----TFVRQQALQWGTA-MGKKVGLAMLEESV-EETAEDLIG 292 (503)
T ss_dssp CEEEEEESSCHHHH-----HHHHHHHHHHTTT-SCCCEEEEESSSCH-HHHHHHHHH
T ss_pred eEEEEeecCCCCch-----HHHHHHHHHHHHh-cCCcEEEEeccCCH-HHHHHHHHH
Confidence 36899999999999 5555555554432 26789998876654 467777654
No 252
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.68 E-value=0.33 Score=48.02 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=15.8
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
++|.||||+||| |++..+.+
T Consensus 3 I~l~G~~GsGKs------T~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKG------TQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHH------HHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 578999999999 66666543
No 253
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.65 E-value=0.37 Score=47.55 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=16.8
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.||||+||| |++..+.+-+
T Consensus 3 I~l~G~~GsGKs------T~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKG------TQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHH------HHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 578999999999 6666665433
No 254
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=84.57 E-value=0.38 Score=47.17 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=18.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 22 ~I~l~G~~GsGKS------T~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKG------TQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4688999999999 6777766544
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.50 E-value=0.39 Score=46.10 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=17.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 6 ~I~l~G~~GsGKS------T~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKG------TQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4689999999999 6667665543
No 256
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.39 E-value=0.38 Score=49.61 Aligned_cols=23 Identities=13% Similarity=-0.078 Sum_probs=18.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.||||+||+ |+++.+.+-+
T Consensus 31 iI~llGpPGsGKg------Tqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKG------TQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHH
Confidence 4678999999999 7777766544
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=84.33 E-value=0.32 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=16.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.||+|+||| |++.++..
T Consensus 11 ~i~l~G~~GsGKS------Tl~~~La~ 31 (191)
T 1zp6_A 11 ILLLSGHPGSGKS------TIAEALAN 31 (191)
T ss_dssp EEEEEECTTSCHH------HHHHHHHT
T ss_pred EEEEECCCCCCHH------HHHHHHHh
Confidence 5789999999999 66666554
No 258
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.20 E-value=0.44 Score=45.81 Aligned_cols=23 Identities=9% Similarity=-0.011 Sum_probs=18.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 4 ~I~l~G~~GsGKs------T~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKS------TIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHH------HHHHHHHHHH
T ss_pred eEEEECCCCCCHH------HHHHHHHHHc
Confidence 4689999999999 7777766544
No 259
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.11 E-value=1.4 Score=48.46 Aligned_cols=59 Identities=8% Similarity=0.002 Sum_probs=39.8
Q ss_pred HHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 742 VHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 742 V~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+..++.+ ..-..++|-|+||+||| +.+..++..+.. .+.+||+.+---. .+.|+.|+..
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKT-----t~al~ia~~~a~--~g~~Vl~fSlEms-~~ql~~Rlls 95 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKT-----SLMMNMVLSALN--DDRGVAVFSLEMS-AEQLALRALS 95 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHH-----HHHHHHHHHHHH--TTCEEEEEESSSC-HHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHH-----HHHHHHHHHHHH--cCCeEEEEeCCCC-HHHHHHHHHH
Confidence 3445543 22237899999999999 555555555554 4789999887654 5567777764
No 260
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=84.01 E-value=0.65 Score=48.08 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=21.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL 790 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RIL 790 (961)
.++|.|+||+||| |++..+.+.+... +..++
T Consensus 6 lIvl~G~pGSGKS------Tla~~La~~L~~~-g~~~i 36 (260)
T 3a4m_A 6 LIILTGLPGVGKS------TFSKNLAKILSKN-NIDVI 36 (260)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHHHHT-TCCEE
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHHHhC-CCEEE
Confidence 4689999999999 6677766655432 44444
No 261
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=83.97 E-value=1 Score=50.90 Aligned_cols=59 Identities=3% Similarity=-0.063 Sum_probs=40.7
Q ss_pred HHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 742 VHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 742 V~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+..++++ .....++|.|+||+||| +.+..++..+... +.+||+.+--.. .+.++.|+..
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKT-----tlal~ia~~~a~~--g~~vl~fSlEms-~~ql~~R~~~ 246 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKT-----AFALKQAKNMSDN--DDVVNLHSLEMG-KKENIKRLIV 246 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHH-----HHHHHHHHHHHHT--TCEEEEECSSSC-TTHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChH-----HHHHHHHHHHHHc--CCEEEEEECCCC-HHHHHHHHHH
Confidence 4455643 22236899999999999 6666666666654 789999987654 4456666654
No 262
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=83.96 E-value=0.42 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=18.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.||+|+||| |++.++...+
T Consensus 10 ~i~l~G~~GsGKS------Tl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKS------AVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHH------HHHHHHHHHH
T ss_pred EEEEEcCCCCCHH------HHHHHHHHhh
Confidence 5789999999999 6667766544
No 263
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=83.95 E-value=0.42 Score=46.12 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=17.8
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.|++|+||| |++..+.+.+
T Consensus 3 I~i~G~~GsGKs------T~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKS------TISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHH------HHHHHHHHHH
T ss_pred EEEECCCccCHH------HHHHHHHHhc
Confidence 579999999999 6777766654
No 264
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=83.87 E-value=0.41 Score=47.76 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=18.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.||||+||| |++..+.+.+
T Consensus 7 ~I~l~G~~GsGKs------T~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKG------TQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 5789999999999 6777766544
No 265
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=83.75 E-value=1.1 Score=45.70 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=30.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeE-EEEecchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI-LICAPWNRTCDKLMECLM 807 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RI-LVcAPSNsAaD~LleRL~ 807 (961)
.++|.|++|+||| |+++.+.+.+... +..| +..-|.....-..+.++.
T Consensus 8 ~i~~eG~~gsGKs------T~~~~l~~~l~~~-~~~v~~~~~p~~~~~g~~i~~~l 56 (213)
T 4edh_A 8 FVTLEGPEGAGKS------TNRDYLAERLRER-GIEVQLTREPGGTPLAERIRELL 56 (213)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHHHTT-TCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHHHHc-CCCcccccCCCCCHHHHHHHHHH
Confidence 5688999999999 6777777777653 4444 334454444433344443
No 266
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.73 E-value=1 Score=45.83 Aligned_cols=37 Identities=14% Similarity=-0.062 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
+-.|+.|++.+-.++ .+.|.||.|+||| |+..+|.-+
T Consensus 9 ~~g~~~~l~~i~~Ge---~~~liG~nGsGKS------TLl~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNT---IVFGLGPAGSGKT------YLAMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCS---EEEEECCTTSSTT------HHHHHHHHH
T ss_pred CHhHHHHHHhccCCC---EEEEECCCCCCHH------HHHHHHhcC
Confidence 667888998874433 5789999999999 677777766
No 267
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.69 E-value=0.42 Score=46.04 Aligned_cols=23 Identities=13% Similarity=-0.038 Sum_probs=18.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 11 ~I~l~G~~GsGKs------T~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKG------TQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 5789999999999 6777665543
No 268
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.68 E-value=0.43 Score=47.54 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=18.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 6 ~I~l~G~~GsGKs------T~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKG------TQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHc
Confidence 4689999999999 6777766544
No 269
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.53 E-value=0.8 Score=46.91 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=24.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.++|.||+|+||| |++..+.+.+.. +..|+.+
T Consensus 28 ~i~i~G~~GsGKs------T~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKT------TVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHHTT--TSCEEEE
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHHhc--CCCceee
Confidence 5689999999999 777887777764 4455443
No 270
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.44 E-value=0.43 Score=46.05 Aligned_cols=23 Identities=9% Similarity=-0.068 Sum_probs=18.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 14 ~I~l~G~~GsGKs------T~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKG------TQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 5789999999999 6777666544
No 271
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.42 E-value=0.48 Score=44.76 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=18.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 4 ~I~l~G~~GsGKs------T~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMT------TVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHH------HHHHHHHHHH
T ss_pred eEEEECCCCCCHH------HHHHHHHHHh
Confidence 4689999999999 6777666544
No 272
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=83.39 E-value=0.44 Score=45.45 Aligned_cols=23 Identities=4% Similarity=-0.158 Sum_probs=17.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 8 ~I~l~G~~GsGKs------T~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKG------TQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4689999999999 6666665533
No 273
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.13 E-value=0.84 Score=49.56 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=33.6
Q ss_pred HHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC----CCCeEEEEecchH-HHHHHHHHHH
Q 002130 742 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----PKSRILICAPWNR-TCDKLMECLM 807 (961)
Q Consensus 742 V~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~----p~~RILVcAPSNs-AaD~LleRL~ 807 (961)
+..+|.+ .....++|.||||+||| +.+..++....... .+.+++..+-.+. ..+.+.+++.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKT-----tla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~ 178 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKT-----QLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD 178 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHH-----HHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHH-----HHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4556643 22236799999999999 44444433322210 2456766665553 3445555443
No 274
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=82.90 E-value=0.89 Score=44.69 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
|.++.+.++..+......-++|.|.+|+||| +++..++.. +.. ..++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKT-----Tl~~~l~~~-~~~--~~~~~~i 63 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKT-----LLIERTIER-IGN--EVKIGAM 63 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHH-----HHHHHHHHH-HTT--TSCEEEE
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHH-----HHHHHHHHH-hcc--CCeEEEE
Confidence 4556666666554433445789999999999 544444443 332 2455444
No 275
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=82.84 E-value=0.49 Score=47.89 Aligned_cols=23 Identities=13% Similarity=-0.049 Sum_probs=18.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++.++.+.+
T Consensus 18 ~I~l~G~~GsGKs------T~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKG------TQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4689999999999 6777766544
No 276
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.64 E-value=1 Score=49.72 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=31.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTC 799 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAa 799 (961)
.++|.|++|+||| +++..+|.++++. +.+|+|.-+.....
T Consensus 55 h~~i~G~tGsGKs-----~~~~~li~~~~~~--g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 55 HLLVNGATGTGKS-----VLLRELAYTGLLR--GDRMVIVDPNGDML 94 (437)
T ss_dssp CEEEEECTTSSHH-----HHHHHHHHHHHHT--TCEEEEEEETTHHH
T ss_pred eEEEECCCCCCHH-----HHHHHHHHHHHHC--CCcEEEEeCCCchh
Confidence 5799999999999 7777778887764 66777777765554
No 277
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=82.42 E-value=3.3 Score=50.49 Aligned_cols=139 Identities=12% Similarity=-0.051 Sum_probs=75.0
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHh---hCCCCceEeccc---------cc
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMK---DIPASEMFRANA---------AF 822 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~---~l~~~~ilRV~a---------~s 822 (961)
+..--.|.||| . +.++..++....+..|.|+|++.--|-.-.+-+.. .+ +..+--+.. ..
T Consensus 92 iaEM~TGEGKT-----L--va~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~L-glsvg~i~~~~~~~~~~~~~ 163 (822)
T 3jux_A 92 VAEMKTGEGKT-----L--AATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFL-GLRVGVINSLGKSYEVVWKN 163 (822)
T ss_dssp EEECCTTSCHH-----H--HTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEEEETTTEEEEEEESS
T ss_pred hhhccCCCCcc-----H--HHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHh-CCEEEEEcCCCccccccccc
Confidence 77888999999 2 23333344455689999999998877665554443 33 222222221 11
Q ss_pred ccccCccHHHH-Hhhhhc-----------------cccc----CCChhhhhccceEEEEeeccchh--hhc-c-----CC
Q 002130 823 READGVSDEIF-QVSLVE-----------------RECF----SCPPLEELRQYKVISSTFVSSFR--LHN-Q-----GI 872 (961)
Q Consensus 823 R~~~~V~~~I~-~y~~~~-----------------~~~F----~~p~~e~L~~~rVVvtT~ssag~--L~~-~-----~~ 872 (961)
.+ .....+. .+|-|. .+.| ....+.....++|+-+|....|. |.. + +.
T Consensus 164 ~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~EfgFDYLRDnm~~~~~~~ 241 (822)
T 3jux_A 164 PD--LARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDK 241 (822)
T ss_dssp HH--HHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHHHHHHHHHTSCSSTTSC
T ss_pred ch--hhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcchhhHhHHhhccCCHHHh
Confidence 00 0000010 111110 0111 11234455678999999988875 332 1 22
Q ss_pred CCCCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCC
Q 002130 873 TAGHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAP 913 (961)
Q Consensus 873 ~~g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDp 913 (961)
....|.++||||+-.+ || -...+-+|+.|-.
T Consensus 242 vqR~~~~aIVDEvDSi-----LI-----DeArtPLiISg~~ 272 (822)
T 3jux_A 242 VQRGHFYAIVDEADSV-----LI-----DEARTPLIISGPS 272 (822)
T ss_dssp CCCCCCEEEEETHHHH-----HT-----TGGGSCEEEECCC
T ss_pred ccCCCCeEEEecccce-----ee-----cCCCCCceeeCCC
Confidence 3456899999998432 21 1234678888843
No 278
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.34 E-value=0.48 Score=46.19 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=16.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.|+||+||| |++.++.+
T Consensus 12 ~I~l~G~~GsGKS------Tv~~~La~ 32 (184)
T 1y63_A 12 NILITGTPGTGKT------SMAEMIAA 32 (184)
T ss_dssp EEEEECSTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4789999999999 66666554
No 279
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.31 E-value=0.88 Score=44.83 Aligned_cols=45 Identities=7% Similarity=0.038 Sum_probs=28.4
Q ss_pred CCCCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 729 YSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 729 ~~n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
|....+...++.++.. .....+.|.||+|+||| |++.++...+..
T Consensus 7 ~~~~~~~~~~~~~~~~----~~g~~i~l~G~sGsGKS------Tl~~~La~~l~~ 51 (200)
T 3uie_A 7 WHECSVEKVDRQRLLD----QKGCVIWVTGLSGSGKS------TLACALNQMLYQ 51 (200)
T ss_dssp ---CCCCHHHHHHHHT----SCCEEEEEECSTTSSHH------HHHHHHHHHHHH
T ss_pred ccccccCHHHHHHhcC----CCCeEEEEECCCCCCHH------HHHHHHHHHHHh
Confidence 3334566666655432 22235689999999999 777887777763
No 280
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.26 E-value=0.52 Score=48.87 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=16.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.||+|+||| |++..+.+
T Consensus 3 li~I~G~~GSGKS------Tla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKT------DMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCcCHH------HHHHHHHh
Confidence 3689999999999 66666554
No 281
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.22 E-value=0.51 Score=46.10 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=19.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.++|.|++|+||| |++..+.+.+..
T Consensus 12 ~I~l~G~~GsGKS------T~~~~L~~~l~~ 36 (212)
T 2wwf_A 12 FIVFEGLDRSGKS------TQSKLLVEYLKN 36 (212)
T ss_dssp EEEEEESTTSSHH------HHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHHHH
Confidence 5689999999999 777777765554
No 282
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=82.15 E-value=0.85 Score=49.27 Aligned_cols=34 Identities=6% Similarity=0.009 Sum_probs=22.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.++|.||+|+||| +++..+.. .+... +.+|++.+
T Consensus 106 vi~ivG~~GsGKT-----Tl~~~LA~-~l~~~-g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKT-----TSCGKLAK-MFVDE-GKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHH-----HHHHHHHH-HHHHT-TCCEEEEE
T ss_pred EEEEEcCCCChHH-----HHHHHHHH-HHHhc-CCEEEEEc
Confidence 4679999999999 66655554 44443 55666543
No 283
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=82.04 E-value=0.55 Score=46.44 Aligned_cols=23 Identities=4% Similarity=0.047 Sum_probs=18.4
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
+.|.||+|+||| |++.+|..++.
T Consensus 3 i~l~G~nGsGKT------TLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKT------TLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHH------HHHHHHHHHHG
T ss_pred EEEECCCCCCHH------HHHHHHHHHhC
Confidence 579999999999 66677776663
No 284
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=81.96 E-value=0.84 Score=45.33 Aligned_cols=24 Identities=8% Similarity=-0.057 Sum_probs=19.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.++|.|++|+||| |++..+.+.+.
T Consensus 27 ~i~~~G~~GsGKs------T~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKS------TLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHhc
Confidence 5688999999999 77777777665
No 285
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=81.88 E-value=0.84 Score=48.93 Aligned_cols=60 Identities=5% Similarity=0.064 Sum_probs=32.6
Q ss_pred HHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhC----CCCeEEEEecchH-HHHHHHHHH
Q 002130 742 VHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS----PKSRILICAPWNR-TCDKLMECL 806 (961)
Q Consensus 742 V~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~----p~~RILVcAPSNs-AaD~LleRL 806 (961)
+..+|.+ .....++|.||||+||| +.+..++..+.... .+.+++..+-.+. -.+.+.+++
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT-----~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKT-----QLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHH-----HHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHh-----HHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4556643 22336899999999999 44444443322110 1456666655543 234444443
No 286
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=81.84 E-value=0.55 Score=48.22 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=17.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.||||+||| |++..+.+.+
T Consensus 31 ~I~l~G~~GsGKs------T~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKG------TQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4689999999999 6777665533
No 287
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=81.82 E-value=0.54 Score=46.77 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=17.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.|+||+||| |++..+.+.+
T Consensus 3 I~l~G~~GsGKs------T~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKG------TQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHH------HHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 589999999999 6777666543
No 288
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=81.59 E-value=0.55 Score=46.98 Aligned_cols=23 Identities=13% Similarity=-0.054 Sum_probs=18.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 7 ~I~l~G~~GsGKs------T~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKG------TQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4688999999999 6777766544
No 289
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=81.49 E-value=1.1 Score=51.79 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=27.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec---chHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP---WNRTCDKL 802 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP---SNsAaD~L 802 (961)
.++|.|++|+||| +++..++..+.+ . +.+|++++. -+.|+|.+
T Consensus 103 vI~ivG~~GvGKT-----Tl~~kLA~~l~~-~-G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 103 VIMFVGLQGSGKT-----TTCSKLAYYYQR-K-GWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp EEEEECSTTSSHH-----HHHHHHHHHHHH-T-TCCEEEEEECCSSSHHHHHH
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHh-C-CCeEEEEeccccchhHHHHH
Confidence 3578899999999 666655555443 2 666666554 34455544
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=81.46 E-value=0.5 Score=47.42 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=16.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.|+||+||| |++..+.+
T Consensus 9 ~I~l~G~~GsGKs------T~a~~La~ 29 (227)
T 1zd8_A 9 RAVIMGAPGSGKG------TVSSRITT 29 (227)
T ss_dssp EEEEEECTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 5689999999999 66666554
No 291
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=81.38 E-value=1.3 Score=43.98 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVL 778 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIl 778 (961)
..+.|.||+|+||| |++.+|.
T Consensus 31 ~~~~l~GpnGsGKS------TLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKT------TFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHH------HHHHHHH
T ss_pred cEEEEEeCCCCCHH------HHHHHHH
Confidence 36899999999999 5555554
No 292
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.31 E-value=0.6 Score=47.10 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=17.4
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.|+||+||| |++..+.+.+
T Consensus 3 I~l~G~~GsGKs------T~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKG------TQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHH------HHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 589999999999 6777666544
No 293
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=81.26 E-value=0.63 Score=44.19 Aligned_cols=23 Identities=9% Similarity=-0.036 Sum_probs=17.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 9 ~i~l~G~~GsGKS------Tva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKS------SLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHH------HHHHHHHHHH
T ss_pred eEEEECCCCCCHH------HHHHHHHHHh
Confidence 4689999999999 6777666544
No 294
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=81.11 E-value=1 Score=51.62 Aligned_cols=68 Identities=12% Similarity=-0.011 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcc---CCCCceEeccCCCCCCccchHHHHHHHHHH----HHHhCCCCeEEEEecchH--HHHHHHHHH
Q 002130 736 SDSNSAVHQILSFE---GQSPYLLEGPLCNNFVLSKTGNVVREAVLQ----IRRRSPKSRILICAPWNR--TCDKLMECL 806 (961)
Q Consensus 736 ~eQr~AV~~ILs~~---~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ----Llk~~p~~RILVcAPSNs--AaD~LleRL 806 (961)
+...+.+...|... ....+.|+|+.|.||| |||..+.. -++.....++-||..... .+..+...+
T Consensus 134 ~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKT------tLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 134 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKS------VIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHH------HHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCCCceEEEEEcCCCCCHH------HHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 45566666666432 2346789999999999 66666553 233334557777765542 455566666
Q ss_pred Hhh
Q 002130 807 MKD 809 (961)
Q Consensus 807 ~~~ 809 (961)
+..
T Consensus 208 l~~ 210 (549)
T 2a5y_B 208 LLM 210 (549)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=81.07 E-value=0.57 Score=45.36 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=16.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.||+|+||| |++.++..
T Consensus 4 ii~l~G~~GaGKS------Tl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKS------TTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCCcHH------HHHHHHhc
Confidence 4689999999999 56666543
No 296
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=81.05 E-value=0.65 Score=46.85 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=12.4
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
|++|.||.|+|||
T Consensus 3 pIVi~GPSG~GK~ 15 (186)
T 1ex7_A 3 PIVISGPSGTGKS 15 (186)
T ss_dssp CEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 7899999999999
No 297
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=81.03 E-value=0.84 Score=45.32 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=21.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.+.|.||+|+||| |++.+|..++..
T Consensus 24 ~v~I~G~sGsGKS------Tl~~~l~~~~~~ 48 (208)
T 3c8u_A 24 LVALSGAPGSGKS------TLSNPLAAALSA 48 (208)
T ss_dssp EEEEECCTTSCTH------HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHhh
Confidence 5679999999999 777888877764
No 298
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=80.77 E-value=0.67 Score=43.70 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=17.4
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
++|.|++|+||| |++..+.+.+
T Consensus 3 I~l~G~~GsGKs------T~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGFMCSGKS------TVGSLLSRSL 24 (168)
T ss_dssp EEEESCTTSCHH------HHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHh
Confidence 589999999999 6777666544
No 299
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=80.72 E-value=1.1 Score=51.03 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=26.2
Q ss_pred HHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCC
Q 002130 739 NSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK 786 (961)
Q Consensus 739 r~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~ 786 (961)
..||..++-- ++. -.+|+|++||||| +.+.+++.++.+.+++
T Consensus 163 iraID~l~PigrGQ-R~lIfg~~g~GKT-----~Ll~~Ia~~i~~~~~d 205 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQ-RGMIVAPPKAGKT-----TILKEIANGIAENHPD 205 (427)
T ss_dssp HHHHHHHSCCBTTC-EEEEEECTTCCHH-----HHHHHHHHHHHHHCTT
T ss_pred chhhhhcccccCCc-eEEEecCCCCChh-----HHHHHHHHHHhhcCCC
Confidence 4566655421 222 2589999999999 6666666665543333
No 300
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=80.70 E-value=0.6 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=17.8
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
..++|.||+|+||| |++..+.+.
T Consensus 13 ~~i~l~G~sGsGKs------Tl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKG------TLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHH------HHHHHHHHH
T ss_pred CEEEEECCCCCCHH------HHHHHHHHh
Confidence 36789999999999 666665543
No 301
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=80.40 E-value=0.45 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=18.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.||+|+||| |++.++...+
T Consensus 8 ~i~l~G~~GsGKS------Tl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKG------TVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHH------HHHHHHHHCT
T ss_pred EEEEECCCCCCHH------HHHHHHHHhh
Confidence 5789999999999 6777766544
No 302
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=80.14 E-value=0.53 Score=48.51 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=17.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|+||+||| |++..+.+.+
T Consensus 34 ~i~l~G~~GsGKS------Tla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKT------TIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTH------HHHHHHHHHT
T ss_pred EEEEECCCCCCHH------HHHHHHHHhc
Confidence 4689999999999 6666665543
No 303
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=80.07 E-value=1.5 Score=45.51 Aligned_cols=48 Identities=6% Similarity=-0.054 Sum_probs=26.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhC---CCCeEE-EEecchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRS---PKSRIL-ICAPWNRTCDKLMECL 806 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~---p~~RIL-VcAPSNsAaD~LleRL 806 (961)
.++|.|++|+||| |+++.+.+.+... .+..|+ ..-|.....-..++++
T Consensus 27 ~I~~eG~~GsGKs------T~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~ 78 (227)
T 3v9p_A 27 FITFEGIDGAGKT------THLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREI 78 (227)
T ss_dssp EEEEECCC---CH------HHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHH
Confidence 5688899999999 6777777766542 034443 3445444333333333
No 304
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=79.98 E-value=1.2 Score=44.45 Aligned_cols=38 Identities=11% Similarity=-0.007 Sum_probs=25.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNR 797 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNs 797 (961)
.+.|.|+.|+||| |+++.+...+.. .+.+|.+..+...
T Consensus 6 ~i~i~G~sGsGKT------Tl~~~L~~~l~~-~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 6 VWQVVGYKHSGKT------TLMEKWVAAAVR-EGWRVGTVKHHGH 43 (169)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHHHH-TTCCEEEEECCC-
T ss_pred EEEEECCCCCCHH------HHHHHHHHhhHh-cCCeeeEEEeCCC
Confidence 4679999999999 455555555554 3667777665543
No 305
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=79.94 E-value=1.7 Score=42.97 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=23.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.+.|.|++|+||| |++.++..++... +..|.+.
T Consensus 24 ~i~i~G~~GsGKs------tl~~~l~~~~~~~-~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKT------TLANQLSQTLREQ-GISVCVF 56 (201)
T ss_dssp EEEEEECTTSSHH------HHHHHHHHHHHHT-TCCEEEE
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHhhc-CCeEEEe
Confidence 5679999999999 6777777766542 4455444
No 306
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=79.90 E-value=0.71 Score=46.97 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=18.5
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..++|.||+|+||| |++.++.+.+
T Consensus 28 ~~i~l~G~~GsGKS------Tl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKG------TVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred cEEEEECCCCCCHH------HHHHHHHHHh
Confidence 35789999999999 6667666443
No 307
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=79.89 E-value=0.65 Score=45.35 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=16.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.|+||+||| |++..+.+
T Consensus 17 ~I~l~G~~GsGKs------T~~~~L~~ 37 (203)
T 1ukz_A 17 VIFVLGGPGAGKG------TQCEKLVK 37 (203)
T ss_dssp EEEEECSTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4678999999999 66665544
No 308
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=79.81 E-value=1.8 Score=49.28 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCC
Q 002130 736 SDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS 787 (961)
Q Consensus 736 ~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~ 787 (961)
.-=..||...+.- ++. -.+|+||+|+||| +.+..++.++.+.+++.
T Consensus 159 ~tGiraID~~~pi~rGQ-r~~IvG~sG~GKT-----tLl~~Iar~i~~~~~~v 205 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQ-RGLIVAPPKAGKT-----MLLQNIAQSIAYNHPDC 205 (422)
T ss_dssp HHHHHHHHHHSCCBTTC-EEEEECCSSSSHH-----HHHHHHHHHHHHHCTTS
T ss_pred cccceeeeeeeeecCCc-EEEEecCCCCChh-----HHHHHHHHHHhhcCCCe
Confidence 3345566655432 222 4689999999999 55544444444444443
No 309
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=79.75 E-value=0.67 Score=45.01 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=17.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
.++|.|++|+||| |++..+.+.
T Consensus 6 ~I~l~G~~GsGKs------T~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKT------TQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHT
T ss_pred EEEEEcCCCCCHH------HHHHHHHHH
Confidence 5689999999999 666666553
No 310
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=79.67 E-value=0.41 Score=46.84 Aligned_cols=31 Identities=13% Similarity=0.003 Sum_probs=22.2
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 791 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV 791 (961)
++|.|++|+||| |+++.+.+.+.. .+..|.+
T Consensus 3 I~i~G~~GsGKs------Tl~~~L~~~l~~-~g~~v~~ 33 (214)
T 1gtv_A 3 IAIEGVDGAGKR------TLVEKLSGAFRA-AGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEHH------HHHHHHHHHHHE-EEEEEEE
T ss_pred EEEEcCCCCCHH------HHHHHHHHHHHh-cCCeEEE
Confidence 579999999999 777777776653 2334443
No 311
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=79.62 E-value=1.2 Score=47.24 Aligned_cols=61 Identities=11% Similarity=0.189 Sum_probs=34.2
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh----------CCC----CeEEEEecchH-HHHHHH
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR----------SPK----SRILICAPWNR-TCDKLM 803 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~----------~p~----~RILVcAPSNs-AaD~Ll 803 (961)
.+..+|.+ .....++|.|+||+||| +....++...... ..+ .+++..+-.+. -.+.|.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT-----~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~ 160 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKT-----QIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM 160 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHH-----HHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHH-----HHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH
Confidence 45566643 22336899999999999 4444444332110 112 57777766554 145555
Q ss_pred HHH
Q 002130 804 ECL 806 (961)
Q Consensus 804 eRL 806 (961)
+++
T Consensus 161 ~~~ 163 (322)
T 2i1q_A 161 QMA 163 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=79.56 E-value=0.75 Score=45.52 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=18.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.|.||+|+||| |++.++...+
T Consensus 7 ~i~i~G~~GsGKS------Tl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKG------TLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 3679999999999 6777766544
No 313
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.37 E-value=0.73 Score=44.76 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=17.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
.+.|.||+|+||| |++.++..+
T Consensus 9 ii~l~Gp~GsGKS------Tl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKT------SLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHH
T ss_pred EEEEECcCCCCHH------HHHHHHHhh
Confidence 5789999999999 666776654
No 314
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=79.27 E-value=1.8 Score=45.16 Aligned_cols=48 Identities=10% Similarity=0.022 Sum_probs=29.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCC-eEEEEecchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS-RILICAPWNRTCDKLMECL 806 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~-RILVcAPSNsAaD~LleRL 806 (961)
.++|.|++|+||| |+++.+.+.+....-. -++..-|.....-..+..+
T Consensus 29 ~i~~eG~~GsGKs------T~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~ 77 (236)
T 3lv8_A 29 FIVIEGLEGAGKS------TAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRAL 77 (236)
T ss_dssp EEEEEESTTSCHH------HHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHH
Confidence 5788999999999 6677777766653222 3444455544433333333
No 315
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=79.15 E-value=1.7 Score=46.54 Aligned_cols=35 Identities=6% Similarity=0.025 Sum_probs=23.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.++|.|++|+||| ++++.+... +.. .+.+|++...
T Consensus 100 vi~i~G~~G~GKT-----T~~~~la~~-~~~-~g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKT-----TTAGKLAYF-YKK-KGFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTT-----HHHHHHHHH-HHH-TTCCEEEEEC
T ss_pred EEEEECCCCCCHH-----HHHHHHHHH-HHH-CCCeEEEEec
Confidence 4567899999999 665555444 443 3667766543
No 316
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.14 E-value=1.2 Score=49.63 Aligned_cols=24 Identities=21% Similarity=0.438 Sum_probs=18.8
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..++|.||+|+||| |++.++...+
T Consensus 170 ~~i~l~G~~GsGKS------Tl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKT------TLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHH------HHHHHHHHHH
T ss_pred CEEEEECCCCCCHH------HHHHHHHhhc
Confidence 36799999999999 6667766543
No 317
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=79.09 E-value=1.3 Score=48.70 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=27.8
Q ss_pred HHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE
Q 002130 741 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 791 (961)
Q Consensus 741 AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV 791 (961)
.+..++... ...++|.||.|+||| |+..++..++....+.+|+.
T Consensus 114 ~l~~l~~~~-~g~i~I~GptGSGKT------TlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 114 VFKRVSDVP-RGLVLVTGPTGSGKS------TTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp HHHHHHHCS-SEEEEEECSTTSCHH------HHHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHhCC-CCEEEEECCCCCCHH------HHHHHHHhcccCCCCcEEEE
Confidence 455544333 237899999999999 45566666665433455543
No 318
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=78.85 E-value=1.3 Score=48.09 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=23.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.++|.|++|.||| ++++.+.. .+.. .+.+||+..
T Consensus 107 vI~ivG~~G~GKT-----T~~~~LA~-~l~~-~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKT-----TSLAKMAN-YYAE-LGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHH-----HHHHHHHH-HHHH-TTCCEEEEE
T ss_pred EEEEECCCCCCHH-----HHHHHHHH-HHHH-CCCeEEEEe
Confidence 4678899999999 66665554 4444 366777654
No 319
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=78.77 E-value=0.69 Score=46.14 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=17.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
.++|.||+|+||| |++.++...
T Consensus 10 ~i~l~GpsGsGKs------Tl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKG------TVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHS
T ss_pred EEEEECcCCCCHH------HHHHHHHhh
Confidence 5789999999999 566665543
No 320
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.36 E-value=1.5 Score=47.78 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=32.1
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCD 800 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD 800 (961)
..++|.||+|+||| +++-.++.++.. .+.+|+|.-+.+...+
T Consensus 36 ~~~~i~G~~G~GKs-----~~~~~~~~~~~~--~~~~~~~~D~~~~~~~ 77 (392)
T 4ag6_A 36 SNWTILAKPGAGKS-----FTAKMLLLREYM--QGSRVIIIDPEREYKE 77 (392)
T ss_dssp CCEEEECCTTSSHH-----HHHHHHHHHHHT--TTCCEEEEESSCCSHH
T ss_pred CceEEEcCCCCCHH-----HHHHHHHHHHHH--CCCEEEEEeCCcCHHH
Confidence 45799999999999 777666666654 4778999888766543
No 321
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=78.20 E-value=0.74 Score=50.83 Aligned_cols=13 Identities=8% Similarity=-0.028 Sum_probs=11.9
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
.++|.||||||||
T Consensus 125 viLI~GpPGsGKT 137 (331)
T 2vhj_A 125 MVIVTGKGNSGKT 137 (331)
T ss_dssp EEEEECSCSSSHH
T ss_pred EEEEEcCCCCCHH
Confidence 4699999999999
No 322
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=78.14 E-value=2.1 Score=43.76 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=30.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeE-EEEecchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRI-LICAPWNRTCDKLMECLM 807 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RI-LVcAPSNsAaD~LleRL~ 807 (961)
.++|.|++|+||| |+++.+.+.+.......| +.--|.....-..+..++
T Consensus 5 ~i~~eG~~gsGKs------T~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l 54 (213)
T 4tmk_A 5 YIVIEGLEGAGKT------TARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLL 54 (213)
T ss_dssp EEEEEECTTSCHH------HHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHH
Confidence 5678899999999 666777777765332244 444455554444454444
No 323
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=77.98 E-value=1.1 Score=48.86 Aligned_cols=35 Identities=9% Similarity=0.038 Sum_probs=23.1
Q ss_pred HHHHHHhcc--CCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 741 AVHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 741 AV~~ILs~~--~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+..+|+.. .-..+.|.||+|+||| |++..+...+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKT------TL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKT------QLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHH------HHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHH------HHHHHHHHHh
Confidence 456677542 2236899999999999 5555554444
No 324
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=77.55 E-value=0.85 Score=44.36 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=18.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.||.|+||| ||+.++...+
T Consensus 7 ~i~i~GpsGsGKS------TL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRR------HIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHC
T ss_pred EEEEECCCCCCHH------HHHHHHHhhC
Confidence 6789999999999 6666665543
No 325
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=77.23 E-value=1.8 Score=59.05 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=16.6
Q ss_pred HHHHHHhccCCCCceEeccCCCCCC
Q 002130 741 AVHQILSFEGQSPYLLEGPLCNNFV 765 (961)
Q Consensus 741 AV~~ILs~~~~~P~LI~GPPGTGKT 765 (961)
.+..++... .++|++||||||||
T Consensus 1259 ll~~~l~~~--~~vLL~GPpGtGKT 1281 (2695)
T 4akg_A 1259 IFYDLLNSK--RGIILCGPPGSGKT 1281 (2695)
T ss_dssp HHHHHHHHT--CEEEEECSTTSSHH
T ss_pred HHHHHHHCC--CeEEEECCCCCCHH
Confidence 344444432 37899999999999
No 326
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=77.01 E-value=0.82 Score=43.85 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=20.7
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
...+|.||-|+||| ||+++|..++.
T Consensus 27 g~~~i~G~NGsGKS------tll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKS------NIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHH------HHHHHHHHHTT
T ss_pred CcEEEECCCCCCHH------HHHHHHHHHHc
Confidence 36799999999999 78888876654
No 327
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=76.90 E-value=0.82 Score=44.60 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=19.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
++.|.||.|+||| |++.++..++.
T Consensus 3 ii~l~GpsGaGKs------Tl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKS------TLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHH------HHHHHHHHHCG
T ss_pred EEEEECCCCCCHH------HHHHHHHhhCC
Confidence 5789999999999 67777776654
No 328
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=76.65 E-value=1.4 Score=43.50 Aligned_cols=40 Identities=8% Similarity=0.150 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHH
Q 002130 735 DSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 735 N~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
|+.|.+.++..+......-++|.|.+|+||| +.+...+..
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKT-----tl~~~l~~~ 61 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKT-----LLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHH-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHH-----HHHHHHHHH
Confidence 5666666666654433334678899999999 555444443
No 329
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=76.58 E-value=1.6 Score=42.88 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=22.6
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+..+|.+ ..-..+.|.||+|+||| |++..|...+
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKS------Tll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKT------QLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHH------HHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHH------HHHHHHHHHH
Confidence 45556643 12236899999999999 5555555433
No 330
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=76.18 E-value=1.8 Score=41.47 Aligned_cols=25 Identities=16% Similarity=-0.045 Sum_probs=19.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.++|.|++|+||| |++.++...+..
T Consensus 7 ~i~l~G~~GsGKS------T~~~~L~~~l~~ 31 (179)
T 2pez_A 7 TVWLTGLSGAGKT------TVSMALEEYLVC 31 (179)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHhh
Confidence 4679999999999 677777666654
No 331
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=76.04 E-value=0.95 Score=47.05 Aligned_cols=21 Identities=10% Similarity=-0.111 Sum_probs=16.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.|+||+||| |++..+.+
T Consensus 4 ~I~l~G~~GsGKS------T~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKS------TWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4689999999999 55555544
No 332
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=75.82 E-value=1.6 Score=45.92 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=29.4
Q ss_pred HHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 741 AVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 741 AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
+++.+. -.....++|.||.|+||| |+..++..++......+|++.-
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKS------Tll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKS------TTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHH------HHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHh-hCCCCEEEEECCCCccHH------HHHHHHHHhCCCCCCCEEEEcC
Confidence 455443 222346899999999999 5666777666542245676653
No 333
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.73 E-value=1 Score=43.15 Aligned_cols=25 Identities=16% Similarity=-0.001 Sum_probs=20.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
+..+|.||.|+||| +|.+||..++.
T Consensus 24 g~~~I~G~NGsGKS------til~Ai~~~l~ 48 (149)
T 1f2t_A 24 GINLIIGQNGSGKS------SLLDAILVGLY 48 (149)
T ss_dssp EEEEEECCTTSSHH------HHHHHHHHHHH
T ss_pred CeEEEECCCCCCHH------HHHHHHHHHHc
Confidence 36799999999999 77888876553
No 334
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=75.68 E-value=1.7 Score=46.77 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=25.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.+.|.||.|+||| |++..+..++.. .+.+|++.+.
T Consensus 104 vi~lvG~nGsGKT------Tll~~Lagll~~-~~g~V~l~g~ 138 (304)
T 1rj9_A 104 VVLVVGVNGVGKT------TTIAKLGRYYQN-LGKKVMFCAG 138 (304)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHHHT-TTCCEEEECC
T ss_pred EEEEECCCCCcHH------HHHHHHHHHHHh-cCCEEEEEee
Confidence 5778999999999 555666666664 3567777653
No 335
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=75.50 E-value=1.2 Score=44.23 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=19.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.+.|.||.|.||| |++.++..++.
T Consensus 6 ~i~lvGpsGaGKS------TLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKS------TLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHH------HHHHHHHHHHT
T ss_pred EEEEECCCCCCHH------HHHHHHHhhCc
Confidence 6789999999999 67777776653
No 336
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=75.34 E-value=1.5 Score=48.34 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=24.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.++|.||.|+||| |++.++..++......+|++.
T Consensus 138 ~i~ivG~~GsGKT------Tll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 138 LILVTGPTGSGKS------TTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp EEEEECSSSSSHH------HHHHHHHHHHHHHSCCEEEEE
T ss_pred EEEEECCCCCCHH------HHHHHHHhhcCcCCCcEEEEe
Confidence 6899999999999 555666666654324677654
No 337
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=74.35 E-value=1.9 Score=46.28 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=23.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.+.|.||.|+||| +++ ..+..+++.. +.+|++.+
T Consensus 102 vi~lvG~nGsGKT-----Tll-~~Lag~l~~~-~g~V~l~g 135 (302)
T 3b9q_A 102 VIMIVGVNGGGKT-----TSL-GKLAHRLKNE-GTKVLMAA 135 (302)
T ss_dssp EEEEECCTTSCHH-----HHH-HHHHHHHHHT-TCCEEEEC
T ss_pred EEEEEcCCCCCHH-----HHH-HHHHHHHHHc-CCeEEEEe
Confidence 5679999999999 444 5555556543 56777765
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=73.84 E-value=1.1 Score=43.64 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=16.3
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
+.|.|++|+||| |++.++..
T Consensus 4 i~i~G~~GsGKS------Tl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNIGCGKS------TVAQMFRE 23 (204)
T ss_dssp EEEEECTTSSHH------HHHHHHHH
T ss_pred EEEECCCCcCHH------HHHHHHHH
Confidence 579999999999 66666655
No 339
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=73.59 E-value=1.2 Score=44.62 Aligned_cols=26 Identities=15% Similarity=-0.022 Sum_probs=21.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
...+|.||.|+||| ||.+||..++-.
T Consensus 24 ~~~~I~G~NgsGKS------til~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKS------SLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHH------HHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHH------HHHHHHHHHhcC
Confidence 36799999999999 778888776653
No 340
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.55 E-value=2.1 Score=48.42 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=27.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe-cc--hHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA-PW--NRTCDKL 802 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA-PS--NsAaD~L 802 (961)
.++|.|++|+||| ++++.++..+ ....+.|||+.+ -+ +.|.+.+
T Consensus 102 vI~ivG~~GvGKT-----T~a~~LA~~l-~~~~G~kVllvd~D~~r~~a~~ql 148 (433)
T 2xxa_A 102 VVLMAGLQGAGKT-----TSVGKLGKFL-REKHKKKVLVVSADVYRPAAIKQL 148 (433)
T ss_dssp EEEEECSTTSSHH-----HHHHHHHHHH-HHTSCCCEEEEECCCSSTTHHHHH
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHH-HHhcCCeEEEEecCCCCccHHHHH
Confidence 4567799999999 6666665554 443366776643 33 3455544
No 341
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=73.48 E-value=1.8 Score=43.67 Aligned_cols=34 Identities=6% Similarity=-0.059 Sum_probs=23.9
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..+++.|.+|+||| +++..++.. +. .+.+|++..
T Consensus 15 ~i~~~~GkgGvGKT-----Tl~~~La~~-l~--~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKT-----TLTGEFGRY-LE--DNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHH-----HHHHHHHHH-HT--TTSCEEEEE
T ss_pred EEEEEeCCCCCCHH-----HHHHHHHHH-HH--CCCeEEEEe
Confidence 45688999999999 555555444 44 377887765
No 342
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=73.46 E-value=2.1 Score=46.48 Aligned_cols=48 Identities=8% Similarity=0.005 Sum_probs=31.0
Q ss_pred HHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 740 SAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 740 ~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.++..+--. .....+.|.||||.||| |++.++..++.. .+.+|.|.+.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKS------TLl~~l~g~~~~-~~g~v~i~~~ 91 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKS------TTIDALGSLLTA-AGHKVAVLAV 91 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHH------HHHHHHHHHHHH-TTCCEEEEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHH------HHHHHHHHhhhh-CCCEEEEEEE
Confidence 455544322 22336789999999999 666777666654 3567777664
No 343
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=73.42 E-value=2.2 Score=46.48 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=24.7
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
..+.|.|+||.||| |+..++...+.. .+.+|.|.+.
T Consensus 75 ~~v~lvG~pgaGKS------TLln~L~~~~~~-~~~~v~V~~~ 110 (349)
T 2www_A 75 FRVGLSGPPGAGKS------TFIEYFGKMLTE-RGHKLSVLAV 110 (349)
T ss_dssp EEEEEECCTTSSHH------HHHHHHHHHHHH-TTCCEEEEEC
T ss_pred eEEEEEcCCCCCHH------HHHHHHHHHhhh-cCCeEEEEee
Confidence 35679999999999 555665555544 2567776664
No 344
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=73.35 E-value=1.2 Score=43.69 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=15.6
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
+.|.||+|+||| |++.++..
T Consensus 5 i~l~G~~GsGKS------T~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKT------TIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHH------HHHHHHHT
T ss_pred EEEECCCCCCHH------HHHHHHHH
Confidence 578999999999 66666544
No 345
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=73.21 E-value=2.1 Score=46.71 Aligned_cols=36 Identities=6% Similarity=-0.033 Sum_probs=23.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE-ecc
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APW 795 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc-APS 795 (961)
.+.|.||.|+||| ++ +..+..+++.. +.+|++. +.+
T Consensus 131 vi~lvG~nGaGKT-----Tl-l~~Lag~l~~~-~g~V~l~g~D~ 167 (328)
T 3e70_C 131 VIMFVGFNGSGKT-----TT-IAKLANWLKNH-GFSVVIAASDT 167 (328)
T ss_dssp EEEEECCTTSSHH-----HH-HHHHHHHHHHT-TCCEEEEEECC
T ss_pred EEEEECCCCCCHH-----HH-HHHHHHHHHhc-CCEEEEEeecc
Confidence 5789999999999 44 45555566654 4456554 444
No 346
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=73.16 E-value=3.5 Score=46.95 Aligned_cols=31 Identities=16% Similarity=-0.032 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHhc--cCCCCceEeccCCCCCC
Q 002130 735 DSDSNSAVHQILSF--EGQSPYLLEGPLCNNFV 765 (961)
Q Consensus 735 N~eQr~AV~~ILs~--~~~~P~LI~GPPGTGKT 765 (961)
-+...+.+...|.. .....++|+||+|.|||
T Consensus 129 R~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKT 161 (591)
T 1z6t_A 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKS 161 (591)
T ss_dssp CHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHH
T ss_pred cHHHHHHHHHHHhcccCCCceEEEEcCCCCCHH
Confidence 35566677777753 22346799999999999
No 347
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=72.45 E-value=2.5 Score=42.01 Aligned_cols=35 Identities=3% Similarity=-0.182 Sum_probs=22.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.++|.|+.|+||| |++..+...+.. .+.+|-+...
T Consensus 8 ~i~i~G~sGsGKT------Tl~~~l~~~l~~-~g~~v~~i~~ 42 (174)
T 1np6_A 8 LLAFAAWSGTGKT------TLLKKLIPALCA-RGIRPGLIKH 42 (174)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHHHH-TTCCEEEEEE
T ss_pred EEEEEeCCCCCHH------HHHHHHHHhccc-cCCceeEEee
Confidence 5689999999999 455555555543 2455554443
No 348
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=72.24 E-value=1.6 Score=42.39 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=17.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.|.|++|+||| |++.++...+
T Consensus 4 ~i~i~G~~GsGKs------t~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKS------SVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHhc
Confidence 3579999999999 6777666544
No 349
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=71.35 E-value=1.7 Score=42.00 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=12.1
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
.+.|.||+|+|||
T Consensus 11 i~~l~G~nGsGKS 23 (171)
T 4gp7_A 11 LVVLIGSSGSGKS 23 (171)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 5789999999999
No 350
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=71.29 E-value=4.1 Score=42.25 Aligned_cols=55 Identities=7% Similarity=-0.035 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhccCCCCceEe---ccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE--EecchHHH
Q 002130 737 DSNSAVHQILSFEGQSPYLLE---GPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI--CAPWNRTC 799 (961)
Q Consensus 737 eQr~AV~~ILs~~~~~P~LI~---GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV--cAPSNsAa 799 (961)
+|...+++++..... .+.|. |-.|+||| ++.+.+.. .+.. .+.|||+ +-+-..+.
T Consensus 21 ~~~~~~~r~~~~~~~-~i~v~~~s~KGGvGKT-----T~a~nLA~-~la~-~G~rVlliD~D~q~~~~ 80 (298)
T 2oze_A 21 KILEELRRILSNKNE-AIVILNNYFKGGVGKS-----KLSTMFAY-LTDK-LNLKVLMIDKDLQATLT 80 (298)
T ss_dssp HHHHHHHHHHHHHCS-CEEEEECCSSSSSSHH-----HHHHHHHH-HHHH-TTCCEEEEEECTTCHHH
T ss_pred HHHHHHHHHhcCCCc-EEEEEeccCCCCchHH-----HHHHHHHH-HHHh-CCCeEEEEeCCCCCCHH
Confidence 455556666654433 33444 58999999 55555544 4443 4778887 44444433
No 351
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=71.25 E-value=2.9 Score=47.79 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=34.7
Q ss_pred HHHHHhcc--CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 002130 742 VHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 742 V~~ILs~~--~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL 806 (961)
+..+|... .-..++|.||+|+||| |++..+...... .+.+++....-+.. +.+..+.
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKS------TLl~~l~g~~~~-~G~~vi~~~~ee~~-~~l~~~~ 328 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKT------LLVSRFVENACA-NKERAILFAYEESR-AQLLRNA 328 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHH------HHHHHHHHHHHT-TTCCEEEEESSSCH-HHHHHHH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHH------HHHHHHHHHHHh-CCCCEEEEEEeCCH-HHHHHHH
Confidence 45566542 2236899999999999 555655555543 36677666655543 3444443
No 352
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=71.08 E-value=2.4 Score=49.22 Aligned_cols=44 Identities=9% Similarity=0.047 Sum_probs=28.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE-ecchH--HHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APWNR--TCDKLM 803 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc-APSNs--AaD~Ll 803 (961)
.++|.||.|+||| |++..|..+++. .+.+|++. +.+.. |.+.+.
T Consensus 295 VI~LVGpNGSGKT------TLl~~LAgll~~-~~G~V~l~g~D~~r~aa~eQL~ 341 (503)
T 2yhs_A 295 VILMVGVNGVGKT------TTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQLQ 341 (503)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHHHH-TTCCEEEECCCTTCHHHHHHHH
T ss_pred EEEEECCCcccHH------HHHHHHHHHhhh-cCCeEEEecCcccchhhHHHHH
Confidence 5789999999999 445555556654 36678876 44433 344443
No 353
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=70.71 E-value=2 Score=46.66 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=23.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 791 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV 791 (961)
..+.|.||+|+||| ||+.+|..++ ..+|++
T Consensus 127 e~vaIvGpsGsGKS------TLl~lL~gl~----~G~I~~ 156 (305)
T 2v9p_A 127 NCLAFIGPPNTGKS------MLCNSLIHFL----GGSVLS 156 (305)
T ss_dssp SEEEEECSSSSSHH------HHHHHHHHHH----TCEEEC
T ss_pred CEEEEECCCCCcHH------HHHHHHhhhc----CceEEE
Confidence 36789999999999 7888888777 345644
No 354
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.44 E-value=2.6 Score=55.42 Aligned_cols=55 Identities=7% Similarity=-0.043 Sum_probs=33.9
Q ss_pred HHHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHH
Q 002130 741 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKL 802 (961)
Q Consensus 741 AV~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~L 802 (961)
.+..+|. . .....++|.|||||||| .....++...++. +.+++..+-....-+..
T Consensus 21 ~LD~lL~~GGi~~G~i~lI~G~pGsGKT-----~LAlqla~~~~~~--G~~vlYI~te~~~~~l~ 78 (1706)
T 3cmw_A 21 SLDIALGAGGLPMGRIVEIYGPESSGKT-----TLTLQVIAAAQRE--GKTCAFIDAEHALDPIY 78 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHH-----HHHHHHHHHHHHT--TCCEEEECTTSCCCHHH
T ss_pred HHHHHhhcCCcCCCeEEEEECCCCCCHH-----HHHHHHHHHHhhC--CCceEEEEecCccHHHH
Confidence 4556665 2 22346899999999999 4444444444543 66777776655433333
No 355
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=70.41 E-value=1.8 Score=42.55 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=19.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.+.|.||.|+||| |++.++..++.
T Consensus 8 ~i~i~G~~GsGKS------Tl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKT------TLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHH------HHHHHHHHHHG
T ss_pred EEEEECCCCCCHH------HHHHHHHHHhC
Confidence 4679999999999 77777777664
No 356
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=70.26 E-value=1.4 Score=44.31 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=12.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHH-HHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVL-QIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIl-QLl 781 (961)
.+.|.||.|+||| |++.++. .++
T Consensus 29 ii~l~Gp~GsGKS------Tl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKT------TVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----------CHHHHHHC---
T ss_pred EEEEECCCCCCHH------HHHHHHHhcCC
Confidence 5789999999999 5666666 554
No 357
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.14 E-value=2.6 Score=55.37 Aligned_cols=53 Identities=8% Similarity=-0.031 Sum_probs=32.0
Q ss_pred HHHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHH
Q 002130 741 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCD 800 (961)
Q Consensus 741 AV~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD 800 (961)
.+..+|. + .....++|.||||+||| +....++....+. +.++++.+-.+....
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKT-----tLaLq~a~~~~~~--G~~vlyis~E~s~~~ 425 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKT-----TLTLQVIAAAQRE--GKTCAFIDAEHALDP 425 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHH-----HHHHHHHHHHHHT--TCCEEEECTTSCCCH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHH-----HHHHHHHHHHHHh--CCCeEEEEccCchHH
Confidence 3555665 2 22336899999999999 5555555555443 445555555444433
No 358
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=70.10 E-value=1.4 Score=44.22 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=22.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.+.|.||.|+||| |++.+|..+++ ..+ |.+..
T Consensus 3 ~i~i~G~nG~GKT------Tll~~l~g~~~-~~G--i~~~g 34 (189)
T 2i3b_A 3 HVFLTGPPGVGKT------TLIHKASEVLK-SSG--VPVDG 34 (189)
T ss_dssp CEEEESCCSSCHH------HHHHHHHHHHH-HTT--CCCEE
T ss_pred EEEEECCCCChHH------HHHHHHHhhcc-cCC--EEEcC
Confidence 3689999999999 56666666666 334 55543
No 359
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=70.04 E-value=1.6 Score=42.21 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=16.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.+.|.|++|+||| |++..+.+
T Consensus 10 ~I~i~G~~GsGKS------T~~~~La~ 30 (203)
T 1uf9_A 10 IIGITGNIGSGKS------TVAALLRS 30 (203)
T ss_dssp EEEEEECTTSCHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4679999999999 66666554
No 360
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=69.94 E-value=2.7 Score=56.08 Aligned_cols=56 Identities=7% Similarity=-0.046 Sum_probs=37.2
Q ss_pred HHHHHHh-c--cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHH
Q 002130 741 AVHQILS-F--EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLM 803 (961)
Q Consensus 741 AV~~ILs-~--~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~Ll 803 (961)
++..+|. . .....++|.|||||||| +....++.+.+++ +.+++..+-.+...+.++
T Consensus 1068 ~Ld~~lg~ggi~~g~~vll~G~~GtGKT-----~la~~~~~ea~k~--Ge~~~Fit~ee~~~~L~a 1126 (2050)
T 3cmu_A 1068 SLDIALGAGGLPMGRIVEIYGPESSGKT-----TLTLQVIAAAQRE--GKTCAFIDAEHALDPIYA 1126 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHH-----HHHHHHHHHHHTT--TCCEEEECTTSCCCHHHH
T ss_pred HHHHHhccCCcCCCcEEEEECCCCCCHH-----HHHHHHHHHHHHc--CCeEEEEEccccHHHHHH
Confidence 3456664 2 22346899999999999 5555555555554 788888887765544443
No 361
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=69.81 E-value=2.8 Score=46.48 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=23.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.+.|.||.|+||| +++ ..+..++... +.+|++.+
T Consensus 159 vi~lvG~nGsGKT-----Tll-~~Lag~l~~~-~G~V~l~g 192 (359)
T 2og2_A 159 VIMIVGVNGGGKT-----TSL-GKLAHRLKNE-GTKVLMAA 192 (359)
T ss_dssp EEEEECCTTSCHH-----HHH-HHHHHHHHHT-TCCEEEEC
T ss_pred EEEEEcCCCChHH-----HHH-HHHHhhcccc-CCEEEEec
Confidence 5679999999999 544 4555556543 56777765
No 362
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=69.68 E-value=3.7 Score=41.94 Aligned_cols=42 Identities=2% Similarity=-0.131 Sum_probs=25.1
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE--ecchHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC--APWNRTCDKLM 803 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc--APSNsAaD~Ll 803 (961)
.+.-|-.|+||| ++.+.+.. .+. .+.|||+. -+.+.+.+.+.
T Consensus 31 ~v~s~kGGvGKT-----T~a~~LA~-~la--~g~~VlliD~D~~~~~~~~~~ 74 (267)
T 3k9g_A 31 TIASIKGGVGKS-----TSAIILAT-LLS--KNNKVLLIDMDTQASITSYFY 74 (267)
T ss_dssp EECCSSSSSCHH-----HHHHHHHH-HHT--TTSCEEEEEECTTCHHHHHTH
T ss_pred EEEeCCCCchHH-----HHHHHHHH-HHH--CCCCEEEEECCCCCCHHHHhh
Confidence 344578899999 55444444 444 37888774 34455554443
No 363
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=69.40 E-value=1.6 Score=42.96 Aligned_cols=21 Identities=5% Similarity=-0.016 Sum_probs=16.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.+.|.|++|+||| |++.++..
T Consensus 23 ~i~i~G~~GsGKS------Tl~~~L~~ 43 (207)
T 2qt1_A 23 IIGISGVTNSGKT------TLAKNLQK 43 (207)
T ss_dssp EEEEEESTTSSHH------HHHHHHHT
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4679999999999 66666554
No 364
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=69.33 E-value=3.2 Score=44.79 Aligned_cols=36 Identities=8% Similarity=0.060 Sum_probs=26.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCC-CeEEEEec
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPK-SRILICAP 794 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~-~RILVcAP 794 (961)
.+.|.||.|+||| |++.+|..++....+ .+|-++..
T Consensus 92 ivgI~G~sGsGKS------TL~~~L~gll~~~~G~~~v~~v~q 128 (312)
T 3aez_A 92 IIGVAGSVAVGKS------TTARVLQALLARWDHHPRVDLVTT 128 (312)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHHHTSTTCCCEEEEEG
T ss_pred EEEEECCCCchHH------HHHHHHHhhccccCCCCeEEEEec
Confidence 5679999999999 778888888775333 45655544
No 365
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=69.20 E-value=1.7 Score=44.58 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=18.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.|.|++|+||| |++..+.+.+
T Consensus 24 iI~I~G~~GSGKS------T~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKS------SVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHT
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4679999999999 7777766543
No 366
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=69.19 E-value=1.9 Score=44.96 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=18.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.|.||+|+||| |++.++.+.+
T Consensus 11 ~i~i~G~~GsGKs------Tla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKS------SVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4689999999999 7777766544
No 367
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=69.07 E-value=4.3 Score=43.92 Aligned_cols=35 Identities=14% Similarity=-0.004 Sum_probs=23.2
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
..+.|.|+||.||| |++..+...+.. .+.+|.|..
T Consensus 57 ~~i~i~G~~g~GKS------Tl~~~l~~~~~~-~~~~v~v~~ 91 (341)
T 2p67_A 57 LRLGVTGTPGAGKS------TFLEAFGMLLIR-EGLKVAVIA 91 (341)
T ss_dssp EEEEEEECTTSCHH------HHHHHHHHHHHH-TTCCEEEEE
T ss_pred EEEEEEcCCCCCHH------HHHHHHHHHHHh-cCCeEEEEe
Confidence 35678999999999 455555555544 255665554
No 368
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=68.27 E-value=1.8 Score=43.75 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=18.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.|.||.|+||| |++.++..++
T Consensus 25 ~~~lvGpsGsGKS------TLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKG------TLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHH------HHHHHHHHHS
T ss_pred EEEEECCCCCCHH------HHHHHHHhhC
Confidence 6889999999999 6777776654
No 369
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=68.17 E-value=4.8 Score=42.82 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=23.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILI 791 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILV 791 (961)
.+.|.||.|+||| |++.++..++.. .....|.+
T Consensus 82 iigI~G~~GsGKS------Tl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 82 IISIAGSVAVGKS------TTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp EEEEEECTTSSHH------HHHHHHHHHHTTSTTCCCEEE
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHhhCCCCCeEEE
Confidence 5679999999999 777888777652 12345655
No 370
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=67.85 E-value=3.2 Score=46.50 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=18.1
Q ss_pred HHHHHHhc--cCCCCceEeccCCCCCC
Q 002130 741 AVHQILSF--EGQSPYLLEGPLCNNFV 765 (961)
Q Consensus 741 AV~~ILs~--~~~~P~LI~GPPGTGKT 765 (961)
.+..+|.+ ..-..++|.||||+|||
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKT 192 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKS 192 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChH
Confidence 45566743 22347899999999999
No 371
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=67.79 E-value=3 Score=48.22 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 734 LDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 734 LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
++..+..-+...+... ..++|.||.|+||| + +..++..++.
T Consensus 245 ~~~~~l~~l~~~v~~g--~~i~I~GptGSGKT-----T-lL~aL~~~i~ 285 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHK--FSAIVVGETASGKT-----T-TLNAIMMFIP 285 (511)
T ss_dssp SCHHHHHHHHHHHHTT--CCEEEEESTTSSHH-----H-HHHHHGGGSC
T ss_pred CCHHHHHHHHHHHhCC--CEEEEECCCCCCHH-----H-HHHHHHhhCC
Confidence 5566666666555432 24799999999999 4 4456655553
No 372
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=67.78 E-value=1.7 Score=43.13 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=19.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.|.||.|+||| |++.+|..++
T Consensus 22 i~~l~GpnGsGKS------TLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKS------TVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHS
T ss_pred EEEEECCCCCCHH------HHHHHHHhhC
Confidence 6789999999999 7777777665
No 373
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=67.64 E-value=5.3 Score=42.43 Aligned_cols=59 Identities=3% Similarity=-0.108 Sum_probs=39.2
Q ss_pred HHHHHHhcc--CCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHH
Q 002130 741 AVHQILSFE--GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLM 807 (961)
Q Consensus 741 AV~~ILs~~--~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~ 807 (961)
.+..+|.+- ....+||.|.|||||| +...+.+..-+++ +.++++.+..-...+ |+.+..
T Consensus 9 ~LD~~l~GGl~~gs~~li~g~p~~~~~-----~l~~qfl~~g~~~--Ge~~~~~~~~e~~~~-l~~~~~ 69 (260)
T 3bs4_A 9 ELDREIGKIKKHSLILIHEEDASSRGK-----DILFYILSRKLKS--DNLVGMFSISYPLQL-IIRILS 69 (260)
T ss_dssp HHHHHHCCBCTTCEEEEEECSGGGCHH-----HHHHHHHHHHHHT--TCEEEEEECSSCHHH-HHHHHH
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCccHH-----HHHHHHHHHHHHC--CCcEEEEEEeCCHHH-HHHHHH
Confidence 356677652 2236789999999999 5555666655654 889999988655544 444443
No 374
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=67.50 E-value=14 Score=42.70 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=28.2
Q ss_pred CCCCCCEEEEEECCCCceeEEEEEEEEecccEEEEEECCC
Q 002130 631 FLLSRDFVYAQRSGGKSKKFQGFLYRVVKWTTVLVEFEED 670 (961)
Q Consensus 631 sLlvGD~VlL~~~g~~~~~y~G~V~~V~~sd~V~L~f~~~ 670 (961)
.+..||.|.+...++. ...|.|..+++ +.+.+..-.+
T Consensus 26 ~~~~ge~v~i~~~~g~--~~~geVv~~~~-~~~~~~~~~~ 62 (464)
T 3gqb_B 26 DLAYGAIVDIKDGTGR--VRGGQVIEVSE-EYAVIQVFEE 62 (464)
T ss_dssp TSCTTCEEEEECTTSC--EEEEEEEEEES-SEEEEEESSC
T ss_pred CCCcCCEEEEEcCCCC--EEEEEEEEEeC-CeEEEEEecC
Confidence 5778999999754432 47899999999 8888876443
No 375
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=67.35 E-value=2.2 Score=43.05 Aligned_cols=29 Identities=10% Similarity=0.032 Sum_probs=22.2
Q ss_pred cccCCCeEEEEeCCCCCCccccChHHHhc
Q 002130 900 LANENTRVIVTGAPHNSPSRVRSDIARKN 928 (961)
Q Consensus 900 LA~~~trVVLaGDpkQLpPvV~S~~A~k~ 928 (961)
+......+|+|.+.==+|-|=....++.|
T Consensus 122 l~~~~~~~vlVsNEVG~GiVP~~~~~R~f 150 (180)
T 1c9k_A 122 CQRCPAKVVLVTNEVGMGIVPENRLARHF 150 (180)
T ss_dssp HHHCCSEEEEECCCCCSSCCCSSHHHHHH
T ss_pred HHccCCCEEEEEccccCCCCCCCHHHHHH
Confidence 34567899999998888877777776654
No 376
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=67.29 E-value=5.8 Score=39.69 Aligned_cols=46 Identities=9% Similarity=0.089 Sum_probs=30.2
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE-EecchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI-CAPWNRTCDKLMECL 806 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV-cAPSNsAaD~LleRL 806 (961)
.+|.|+-|+||| |.++.+.+.++.. +.+|++ --|.....-..+.++
T Consensus 3 I~~EG~DGsGKs------Tq~~~L~~~L~~~-g~~v~~treP~~t~~~~~ir~~ 49 (197)
T 3hjn_A 3 ITFEGIDGSGKS------TQIQLLAQYLEKR-GKKVILKREPGGTETGEKIRKI 49 (197)
T ss_dssp EEEECSTTSSHH------HHHHHHHHHHHHT-TCCEEEEESSCSSHHHHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHHHHHHHC-CCcEEEEECCCCCcHHHHHHHH
Confidence 468899999999 7778888877764 445544 445544444444443
No 377
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=67.22 E-value=5.9 Score=43.22 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=24.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCC-CCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSP-KSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p-~~RILVcA 793 (961)
.+.|.||.|+||| |++.++..++...+ +.+|.+..
T Consensus 94 iigI~GpsGSGKS------Tl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 94 IIGIAGSVAVGKS------TTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEEEECCCCCCHH------HHHHHHHHHhcccCCCCeEEEEe
Confidence 4568999999999 67788887776422 33455444
No 378
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=67.14 E-value=2.3 Score=47.47 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=16.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
.++|.||+|+||| |++.++...
T Consensus 26 ~i~l~G~~G~GKT------Tl~~~la~~ 47 (359)
T 2ga8_A 26 CVILVGSPGSGKS------TIAEELCQI 47 (359)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHH
T ss_pred EEEEECCCCCcHH------HHHHHHHHH
Confidence 3789999999999 455554443
No 379
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=67.04 E-value=2.1 Score=46.15 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=24.9
Q ss_pred CCccEEEEecCCCCChHHHHHHHh----ccccCCCeEEEEe
Q 002130 875 GHFSHIFLIDASSATEPETMIVLG----NLANENTRVIVTG 911 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa----~LA~~~trVVLaG 911 (961)
+..+++|+||-.-.+.++..--|. .+...+..||++.
T Consensus 271 ~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~s 311 (339)
T 3qkt_A 271 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 311 (339)
T ss_dssp TTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 357899999999999986643332 2233445777776
No 380
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=66.77 E-value=6.6 Score=43.24 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=20.9
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
..+++|.|++||||| +++.+|.....
T Consensus 160 ~~~vli~Ge~GtGK~------~lAr~ih~~s~ 185 (387)
T 1ny5_A 160 ECPVLITGESGVGKE------VVARLIHKLSD 185 (387)
T ss_dssp CSCEEEECSTTSSHH------HHHHHHHHHST
T ss_pred CCCeEEecCCCcCHH------HHHHHHHHhcC
Confidence 457899999999999 57777776544
No 381
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=66.22 E-value=2.2 Score=43.51 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=17.5
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
.+++|.||.|+||| ||+.++...
T Consensus 20 ~~ivl~GPSGaGKs------TL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRS------HIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHH------HHHHHHHHH
T ss_pred CEEEEECcCCCCHH------HHHHHHHhh
Confidence 36789999999999 566665543
No 382
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=66.03 E-value=4.1 Score=42.17 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=30.0
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE--EecchHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI--CAPWNRTCDKLMECLM 807 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV--cAPSNsAaD~LleRL~ 807 (961)
..++|.|++|+||| |+++.+.+.+....+..|.+ --|.....-.++.++.
T Consensus 22 ~~i~~~G~~g~GKs------t~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l 73 (223)
T 3ld9_A 22 MFITFEGIDGSGKT------TQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLL 73 (223)
T ss_dssp EEEEEECSTTSSHH------HHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHH------HHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHH
Confidence 35678899999999 66677766665312444544 3455444444444443
No 383
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=65.70 E-value=5.5 Score=42.39 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=22.0
Q ss_pred CceEecc-CCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGP-LCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GP-PGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.++|.|+ +|.||| ++.+.+... +.+ .+.|||+.-
T Consensus 106 vI~vts~kgG~GKT-----tva~nLA~~-lA~-~G~rVLLID 140 (299)
T 3cio_A 106 ILMITGATPDSGKT-----FVSSTLAAV-IAQ-SDQKVLFID 140 (299)
T ss_dssp EEEEEESSSSSCHH-----HHHHHHHHH-HHH-TTCCEEEEE
T ss_pred EEEEECCCCCCChH-----HHHHHHHHH-HHh-CCCcEEEEE
Confidence 4567776 899999 555544444 443 377887763
No 384
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=65.29 E-value=5.1 Score=41.17 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=28.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecc-hHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPW-NRTCDKLMECLM 807 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPS-NsAaD~LleRL~ 807 (961)
.++|.|++|+||| |+++.+.+.+.. .-+++.-|. ....-..++.++
T Consensus 7 ~i~~eG~~g~GKs------t~~~~l~~~l~~---~~~~~~ep~~~t~~g~~ir~~l 53 (216)
T 3tmk_A 7 LILIEGLDRTGKT------TQCNILYKKLQP---NCKLLKFPERSTRIGGLINEYL 53 (216)
T ss_dssp EEEEEECSSSSHH------HHHHHHHHHHCS---SEEEEESSCTTSHHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHhcc---cceEEEecCCCChHHHHHHHHH
Confidence 5688999999999 677777776653 234555552 333334444443
No 385
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=65.27 E-value=5.3 Score=41.90 Aligned_cols=33 Identities=6% Similarity=0.080 Sum_probs=21.5
Q ss_pred CceEecc-CCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 753 PYLLEGP-LCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 753 P~LI~GP-PGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.++|.|+ +|.||| ++.+.+...+.+ .+.|||+.
T Consensus 84 vI~vts~kgG~GKT-----t~a~nLA~~lA~--~G~rVLLI 117 (271)
T 3bfv_A 84 SIVITSEAPGAGKS-----TIAANLAVAYAQ--AGYKTLIV 117 (271)
T ss_dssp EEEEECSSTTSSHH-----HHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEEECCCCCCcHH-----HHHHHHHHHHHh--CCCeEEEE
Confidence 4566665 899999 555555444443 37788775
No 386
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=65.14 E-value=5.8 Score=43.16 Aligned_cols=36 Identities=6% Similarity=-0.004 Sum_probs=24.1
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
...++-|-.|+||| ++.+.+... +.+ .+.|||++.-
T Consensus 27 ~i~v~sgKGGvGKT-----TvA~~LA~~-lA~-~G~rVLlvD~ 62 (349)
T 3ug7_A 27 KYIMFGGKGGVGKT-----TMSAATGVY-LAE-KGLKVVIVST 62 (349)
T ss_dssp EEEEEECSSSTTHH-----HHHHHHHHH-HHH-SSCCEEEEEC
T ss_pred EEEEEeCCCCccHH-----HHHHHHHHH-HHH-CCCeEEEEeC
Confidence 35577799999999 554444444 443 3788888763
No 387
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=65.09 E-value=2.3 Score=46.67 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=15.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.||+|+||| |++..+.+
T Consensus 7 ~i~i~GptGsGKT------tla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKT------DLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4689999999999 55555443
No 388
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=64.95 E-value=4.9 Score=44.13 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=28.5
Q ss_pred HHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh-CCCCeEEEEec
Q 002130 743 HQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR-SPKSRILICAP 794 (961)
Q Consensus 743 ~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~-~p~~RILVcAP 794 (961)
..++.......+++.|-.|+||| ++.+.+.. .+.. ..+.|||++.-
T Consensus 10 ~~~l~~~~~~i~~~~gkGGvGKT-----t~a~~lA~-~la~~~~g~~vllid~ 56 (348)
T 3io3_A 10 ESIVQHDSLKWIFVGGKGGVGKT-----TTSSSVAV-QLALAQPNEQFLLIST 56 (348)
T ss_dssp HHHHTCTTCSEEEEECSTTSSHH-----HHHHHHHH-HHHHHCTTSCEEEEEC
T ss_pred HHHhcCCCcEEEEEeCCCCCcHH-----HHHHHHHH-HHHHhcCCCeEEEEEC
Confidence 34454443446788899999999 44444444 4441 35778877654
No 389
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=64.77 E-value=4.5 Score=56.12 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=33.2
Q ss_pred HHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE-ecchHHHHHHHHHHHh
Q 002130 739 NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APWNRTCDKLMECLMK 808 (961)
Q Consensus 739 r~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc-APSNsAaD~LleRL~~ 808 (961)
...+...+... .|+|+.|||||||| .++..++ ...++..++.. ......++.+...+..
T Consensus 1294 ~~ll~~ll~~~--~pvLL~GptGtGKT-----~li~~~L----~~l~~~~~~~infS~~Tta~~l~~~~e~ 1353 (3245)
T 3vkg_A 1294 VDVLHAWLSEH--RPLILCGPPGSGKT-----MTLTSTL----RAFPDFEVVSLNFSSATTPELLLKTFDH 1353 (3245)
T ss_dssp HHHHHHHHHTT--CCCEEESSTTSSHH-----HHHHHHG----GGCTTEEEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CcEEEECCCCCCHH-----HHHHHHH----HhCCCCceEEEEeeCCCCHHHHHHHHhh
Confidence 33444444432 37899999999999 5554443 33334343333 3334445666666643
No 390
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=64.76 E-value=2.6 Score=44.12 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=18.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|++|+||| |++.++...+
T Consensus 50 ~i~l~G~~GsGKS------Tl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKT------TVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHhc
Confidence 5789999999999 6777766654
No 391
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=64.45 E-value=2.5 Score=41.86 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=16.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.+.|.|++|+||| |++..+..
T Consensus 6 ~I~i~G~~GSGKS------T~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKS------TVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4679999999999 66666544
No 392
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=64.21 E-value=3.9 Score=44.60 Aligned_cols=44 Identities=9% Similarity=-0.011 Sum_probs=27.3
Q ss_pred HHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 744 QILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 744 ~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.++.......+++.|-.|+||| ++.+.+ ...+.. .+.|||++.-
T Consensus 9 ~~l~~~~~~i~~~sgkGGvGKT-----t~a~~l-A~~la~-~g~~vllid~ 52 (334)
T 3iqw_A 9 SILDQRSLRWIFVGGKGGVGKT-----TTSCSL-AIQLAK-VRRSVLLLST 52 (334)
T ss_dssp HHHHCTTCCEEEEECSTTSSHH-----HHHHHH-HHHHTT-SSSCEEEEEC
T ss_pred HHhcCCCeEEEEEeCCCCccHH-----HHHHHH-HHHHHh-CCCcEEEEEC
Confidence 4444433345678899999999 444444 444443 4778777653
No 393
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=63.98 E-value=4.4 Score=44.41 Aligned_cols=49 Identities=4% Similarity=-0.155 Sum_probs=30.2
Q ss_pred HHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 739 NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 739 r~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
..||..++.-..-..+.|+||.|+||| |+..+|..++.. ....|.++..
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKT------TLl~~I~g~~~~-~~g~i~~~G~ 107 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKS------TLLGMICNGASA-DIIVLALIGE 107 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHH------HHHHHHHHHSCC-SEEEEEEESC
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHH------HHHHHHhcCCCC-CEEEEEEecc
Confidence 468888754332235789999999999 555666655432 1224455543
No 394
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=62.94 E-value=7.4 Score=49.43 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHH---HHHhCCCCeEEEEecchHHHHHHHHHHHh
Q 002130 736 SDSNSAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQ---IRRRSPKSRILICAPWNRTCDKLMECLMK 808 (961)
Q Consensus 736 ~eQr~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQ---Llk~~p~~RILVcAPSNsAaD~LleRL~~ 808 (961)
+...+.+...|.. .....+.|+||.|.||| |||..+.+ +....+...+.|+.......+.++..|..
T Consensus 134 e~eLeeL~elL~~~d~~RVV~IvGmGGIGKT------TLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKT------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEECCSTTSSHH------HHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEEcCCCccHH------HHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4556666666654 23346789999999999 55555542 33333344556665433334445555443
No 395
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=62.80 E-value=2.7 Score=42.91 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=19.4
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
..++|.||.|+||| ||+.++..++
T Consensus 17 ~ii~l~GpsGsGKS------TLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKS------SLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHH------HHHHHHHHHS
T ss_pred cEEEEECCCCCCHH------HHHHHHhccC
Confidence 36899999999999 6777776654
No 396
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=62.53 E-value=2.8 Score=41.32 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=16.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.+.|.|++|+||| |++..+.+
T Consensus 5 ~i~i~G~~gsGks------t~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKS------TIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4689999999999 66666554
No 397
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=62.29 E-value=2.1 Score=47.72 Aligned_cols=21 Identities=10% Similarity=-0.129 Sum_probs=15.8
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVL 778 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIl 778 (961)
..++|.|+||+||| |++..+.
T Consensus 259 ~lIil~G~pGSGKS------Tla~~L~ 279 (416)
T 3zvl_A 259 EVVVAVGFPGAGKS------TFIQEHL 279 (416)
T ss_dssp CEEEEESCTTSSHH------HHHHHHT
T ss_pred EEEEEECCCCCCHH------HHHHHHH
Confidence 45788999999999 5555543
No 398
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=62.26 E-value=3 Score=43.70 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=17.2
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.-|.||||+||| |+++.+.+-+
T Consensus 11 ~~~~G~pGsGKs------T~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKG------TQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHH------HHHHHHHHHH
T ss_pred eeeECCCCCCHH------HHHHHHHHHh
Confidence 458999999999 7777766544
No 399
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=62.14 E-value=4.6 Score=45.74 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=22.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.++|.|+.|+||| ++++.+. ..+... +.+|++..
T Consensus 100 vi~i~G~~GsGKT-----T~~~~LA-~~l~~~-g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKT-----TTAAKLA-LYYKGK-GRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHH-----HHHHHHH-HHHHTT-TCCEEEEE
T ss_pred EEEEECCCCCCHH-----HHHHHHH-HHHHHc-CCeEEEee
Confidence 3567799999999 5555444 445543 66666644
No 400
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=62.12 E-value=3.3 Score=41.85 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=16.9
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
.+.|.|++|+||| |++.++...
T Consensus 18 ~i~i~G~~gsGKs------t~~~~l~~~ 39 (236)
T 1q3t_A 18 QIAIDGPASSGKS------TVAKIIAKD 39 (236)
T ss_dssp EEEEECSSCSSHH------HHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHH
Confidence 4679999999999 666666543
No 401
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=62.03 E-value=3.4 Score=46.81 Aligned_cols=49 Identities=10% Similarity=-0.038 Sum_probs=31.2
Q ss_pred HHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 739 NSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 739 r~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
..|+..++.-..-..+.|+||.|+||| ||..+|..++.. ....|.++..
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKS------TLl~~Iag~~~~-~~G~i~~~G~ 193 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKS------VLLGMMARYTRA-DVIVVGLIGE 193 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHH------HHHHHHHHHSCC-SEEEEEEESC
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHH------HHHHHHhcccCC-CeEEEEEece
Confidence 458888754332236789999999999 556666665532 1235555554
No 402
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=60.97 E-value=6.1 Score=43.31 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=21.5
Q ss_pred CCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 750 GQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 750 ~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
...+++|.|++||||+ +++.+|.+...
T Consensus 151 ~~~~vli~GesGtGKe------~lAr~ih~~s~ 177 (368)
T 3dzd_A 151 SKAPVLITGESGTGKE------IVARLIHRYSG 177 (368)
T ss_dssp SCSCEEEECCTTSSHH------HHHHHHHHHHC
T ss_pred cchhheEEeCCCchHH------HHHHHHHHhcc
Confidence 3457999999999999 67777776554
No 403
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=60.91 E-value=3.5 Score=43.97 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=20.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.+.|.||.|+||| |++..+..++..
T Consensus 33 ii~I~G~sGsGKS------Tla~~L~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKS------FTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHhhh
Confidence 4579999999999 777887777764
No 404
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=60.82 E-value=4.9 Score=47.85 Aligned_cols=51 Identities=12% Similarity=-0.033 Sum_probs=28.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 727 CPYSNYKLDSDSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 727 ~~~~n~~LN~eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
..|.....+.++|++...--.......++|.|++|+||| |++.++.+.+..
T Consensus 28 ~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKS------TlAr~La~~L~~ 78 (630)
T 1x6v_B 28 VTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKT------TVSMALEEYLVC 78 (630)
T ss_dssp ------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHH------HHHHHHHHHHHH
T ss_pred ccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHH------HHHHHHHHHHHh
Confidence 445445567888876432000012235689999999999 777777766643
No 405
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=60.74 E-value=8.1 Score=39.00 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=29.5
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE-ecchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC-APWNRTCDKLMECL 806 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc-APSNsAaD~LleRL 806 (961)
+.+|.|+.|+||| |.++.+.+.+.. +.+++++ -|.....-..+.++
T Consensus 4 FI~~EG~dGsGKs------Tq~~~L~~~L~~--~~~v~~~~eP~~t~~g~~ir~~ 50 (205)
T 4hlc_A 4 FITFEGPEGSGKT------TVINEVYHRLVK--DYDVIMTREPGGVPTGEEIRKI 50 (205)
T ss_dssp EEEEECCTTSCHH------HHHHHHHHHHTT--TSCEEEEESSTTCHHHHHHHHH
T ss_pred EEEEECCCCCcHH------HHHHHHHHHHHC--CCCEEEeeCCCCChHHHHHHHH
Confidence 4578899999999 677777777753 5555554 45444443444443
No 406
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=60.70 E-value=3.5 Score=41.93 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=18.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+-|.||.|+||| |++.++..++
T Consensus 27 iigI~G~~GsGKS------Tl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKS------TVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHh
Confidence 4679999999999 6777777655
No 407
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=59.95 E-value=7.1 Score=45.04 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=19.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
-.+|+||+|+||| +.+..++.++...
T Consensus 153 ~~~i~G~sGvGKT-----tL~~~l~~~~~~~ 178 (473)
T 1sky_E 153 KIGLFGGAGVGKT-----VLIQELIHNIAQE 178 (473)
T ss_dssp EEEEECCSSSCHH-----HHHHHHHHHHHHH
T ss_pred EEEEECCCCCCcc-----HHHHHHHhhhhhc
Confidence 4689999999999 5655565555443
No 408
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=59.83 E-value=3.3 Score=43.59 Aligned_cols=20 Identities=15% Similarity=-0.044 Sum_probs=16.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVL 778 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIl 778 (961)
.+.|.|++|+||| |++..+.
T Consensus 77 iI~I~G~~GSGKS------Tva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKS------SVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHH------HHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHH
Confidence 4679999999999 6666655
No 409
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=59.73 E-value=17 Score=38.47 Aligned_cols=66 Identities=8% Similarity=-0.065 Sum_probs=35.8
Q ss_pred cCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCC-eEEEEecchHHHHHHHHHHHh--hCCCCceEeccc
Q 002130 749 EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKS-RILICAPWNRTCDKLMECLMK--DIPASEMFRANA 820 (961)
Q Consensus 749 ~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~-RILVcAPSNsAaD~LleRL~~--~l~~~~ilRV~a 820 (961)
...+.||++||.|+||+ .++..++..+....... .++... .+..++.+.+.+.. .+.+.+++-+..
T Consensus 16 ~~~~~yl~~G~e~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~plf~~~kvvii~~ 84 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQ-----ESQDAVRQVAAAQGFEEHHTFSID-PNTDWNAIFSLCQAMSLFASRQTLLLLL 84 (343)
T ss_dssp CCCSEEEEEESCHHHHH-----HHHHHHHHHHHHHTCCEEEEEECC-TTCCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred CCCcEEEEECCcHHHHH-----HHHHHHHHHHHhCCCCeeEEEEec-CCCCHHHHHHHhcCcCCccCCeEEEEEC
Confidence 33457899999999999 55544444444332112 222221 23345555555443 355566666543
No 410
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=59.39 E-value=3.3 Score=42.70 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=16.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.+.|.||+|+||| |++.++.+
T Consensus 29 ~I~I~G~~GsGKS------Tl~k~La~ 49 (252)
T 4e22_A 29 VITVDGPSGAGKG------TLCKALAE 49 (252)
T ss_dssp EEEEECCTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4679999999999 66666654
No 411
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=59.00 E-value=8 Score=41.04 Aligned_cols=38 Identities=5% Similarity=0.100 Sum_probs=23.9
Q ss_pred CCccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCC
Q 002130 875 GHFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNS 916 (961)
Q Consensus 875 g~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQL 916 (961)
..||+||||=+.-....++.+- +.....+|||-++...
T Consensus 200 ~~yD~VIIDtpp~~~~~da~~l----~~~aD~vllVv~~~~~ 237 (286)
T 3la6_A 200 KNYDLVLIDTPPILAVTDAAIV----GRHVGTTLMVARYAVN 237 (286)
T ss_dssp HHCSEEEEECCCTTTCTHHHHH----TTTCSEEEEEEETTTS
T ss_pred hCCCEEEEcCCCCcchHHHHHH----HHHCCeEEEEEeCCCC
Confidence 3699999997765544444332 2234678888766554
No 412
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=58.60 E-value=3.5 Score=40.13 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+.|.||-|+||| |++.+|..++
T Consensus 35 ~v~L~G~nGaGKT------TLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKT------TLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHT
T ss_pred EEEEECCCCCCHH------HHHHHHHHhC
Confidence 6789999999999 7778877766
No 413
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=58.35 E-value=3.9 Score=44.79 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=19.8
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+.++|.||.|+||| ||.++|...+
T Consensus 24 g~~~i~G~NGaGKT------Tll~ai~~al 47 (365)
T 3qf7_A 24 GITVVEGPNGAGKS------SLFEAISFAL 47 (365)
T ss_dssp EEEEEECCTTSSHH------HHHHHHHHHH
T ss_pred CeEEEECCCCCCHH------HHHHHHHHHh
Confidence 36799999999999 7778887654
No 414
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=57.93 E-value=7.3 Score=41.94 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=23.8
Q ss_pred CCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 751 QSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 751 ~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
....++-|-.|.||| ++.+.+.. .+.+ .+.|||++.
T Consensus 19 ~~i~v~sgkGGvGKT-----Tva~~LA~-~lA~-~G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKT-----TTSCSLAI-QMSK-VRSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHH-----HHHHHHHH-HHHT-SSSCEEEEE
T ss_pred CEEEEEeCCCCCcHH-----HHHHHHHH-HHHH-CCCeEEEEE
Confidence 345677899999999 44444444 4443 478888763
No 415
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=57.68 E-value=4.2 Score=42.18 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=12.0
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
.++|.||+|+|||
T Consensus 36 ~ilI~GpsGsGKS 48 (205)
T 2qmh_A 36 GVLITGDSGVGKS 48 (205)
T ss_dssp EEEEECCCTTTTH
T ss_pred EEEEECCCCCCHH
Confidence 4799999999999
No 416
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=57.63 E-value=4.1 Score=37.13 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 4 i~v~G~~~~GKS 15 (161)
T 2dyk_A 4 VVIVGRPNVGKS 15 (161)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 417
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=57.43 E-value=4 Score=39.79 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=11.8
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
-++|.|++|+|||
T Consensus 14 ~i~~~G~~g~GKT 26 (218)
T 1nrj_B 14 SIIIAGPQNSGKT 26 (218)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4689999999999
No 418
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=57.37 E-value=3.8 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=19.8
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
+..+|.|+.|.||| +|.+||..+
T Consensus 26 gl~vi~G~NGaGKT------~ileAI~~~ 48 (371)
T 3auy_A 26 GIVAIIGENGSGKS------SIFEAVFFA 48 (371)
T ss_dssp EEEEEEECTTSSHH------HHHHHHHHH
T ss_pred CeEEEECCCCCCHH------HHHHHHHHH
Confidence 47899999999999 788998763
No 419
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=57.12 E-value=6.4 Score=45.01 Aligned_cols=49 Identities=8% Similarity=-0.065 Sum_probs=30.5
Q ss_pred HHHHHHHh-c-cCCCCceEeccCCCCCCccchHHHHHHH--HHHHHHhCCCCeEEEEecc
Q 002130 740 SAVHQILS-F-EGQSPYLLEGPLCNNFVLSKTGNVVREA--VLQIRRRSPKSRILICAPW 795 (961)
Q Consensus 740 ~AV~~ILs-~-~~~~P~LI~GPPGTGKTls~~g~TLVea--IlQLlk~~p~~RILVcAPS 795 (961)
.|+..+.- . ..-..++|.||+|+||| |++.+ +.-++.. ....|.|....
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKS------TL~~~~ll~Gl~~~-~~g~i~v~g~~ 78 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKT------LFSIQFLYNGIIEF-DEPGVFVTFEE 78 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHH------HHHHHHHHHHHHHH-CCCEEEEESSS
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHH------HHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence 35667665 3 22236899999999999 55555 3444442 24567776543
No 420
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=56.98 E-value=9.6 Score=52.31 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=12.0
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
+.++.||+|||||
T Consensus 647 ~~~l~GpaGtGKT 659 (2695)
T 4akg_A 647 GGCFFGPAGTGKT 659 (2695)
T ss_dssp EEEEECCTTSCHH
T ss_pred CCcccCCCCCCcH
Confidence 5689999999999
No 421
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=56.85 E-value=4.9 Score=46.68 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=30.2
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE-EecchHHHHHHHHHHHh
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI-CAPWNRTCDKLMECLMK 808 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV-cAPSNsAaD~LleRL~~ 808 (961)
..|+|++|+||| +.+.++|.++.+.+.+..|.+ |.--..-+..+.+.+.+
T Consensus 168 ~gIfgg~GvGKT-----~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 168 IGLFGGAGVGKT-----VLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp EEEEECSSSSHH-----HHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred EEeecCCCCCch-----HHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 589999999999 777788777654433333332 23333334444444443
No 422
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=56.73 E-value=4.2 Score=39.34 Aligned_cols=12 Identities=17% Similarity=-0.061 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 8 v~lvG~~g~GKS 19 (199)
T 2f9l_A 8 VVLIGDSGVGKS 19 (199)
T ss_dssp EEEESSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 579999999999
No 423
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=56.61 E-value=4.5 Score=46.81 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=24.5
Q ss_pred HHHHHHHhc-cCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 740 SAVHQILSF-EGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 740 ~AV~~ILs~-~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.||...+-- ++. -..|+|++|+||| +.+.++|.++.+
T Consensus 142 r~ID~l~pigkGQ-r~~Ifgg~G~GKT-----~L~~~i~~~~~~ 179 (482)
T 2ck3_D 142 KVVDLLAPYAKGG-KIGLFGGAGVGKT-----VLIMELINNVAK 179 (482)
T ss_dssp HHHHHHSCEETTC-EEEEEECTTSSHH-----HHHHHHHHHTTT
T ss_pred EEEecccccccCC-eeeeecCCCCChH-----HHHHHHHHhhHh
Confidence 555554422 222 2589999999999 777777776543
No 424
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=56.10 E-value=4.8 Score=40.36 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=17.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQI 780 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQL 780 (961)
.+.|.|++|+||| |++..+.+.
T Consensus 14 iIgltG~~GSGKS------Tva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKS------TVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHh
Confidence 4568999999999 666666654
No 425
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=56.10 E-value=6.7 Score=41.65 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=15.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.+.|.||.|+||| |++..+.+.+.
T Consensus 7 iIgItG~sGSGKS------Tva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTS------TVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CC------THHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHHh
Confidence 4678999999999 67777766554
No 426
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=55.75 E-value=15 Score=42.16 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=43.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecc
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRAN 819 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~ 819 (961)
..+|.|-.|+||| .+++.++.+ .+..+||.|++...|+.+.+.|...++.. ++.+-
T Consensus 16 ~~~l~g~~gs~ka-----~~~a~l~~~-----~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp 71 (483)
T 3hjh_A 16 QRLLGELTGAACA-----TLVAEIAER-----HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLA 71 (483)
T ss_dssp EEEEECCCTTHHH-----HHHHHHHHH-----SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECC
T ss_pred eEEEeCCCchHHH-----HHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEe
Confidence 4689999999999 777776543 25679999999999999999998755443 44443
No 427
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=55.53 E-value=6.8 Score=41.96 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=23.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.+++-|-.|+||| ++.+.+... +.+ .+.|||++.-
T Consensus 16 i~v~sgKGGvGKT-----TvA~~LA~~-lA~-~G~rVLlvD~ 50 (324)
T 3zq6_A 16 FVFIGGKGGVGKT-----TISAATALW-MAR-SGKKTLVIST 50 (324)
T ss_dssp EEEEEESTTSSHH-----HHHHHHHHH-HHH-TTCCEEEEEC
T ss_pred EEEEeCCCCchHH-----HHHHHHHHH-HHH-CCCcEEEEeC
Confidence 5677799999999 554444444 443 3788887654
No 428
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=55.31 E-value=4.7 Score=36.62 Aligned_cols=12 Identities=8% Similarity=-0.158 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 6 i~v~G~~~~GKS 17 (167)
T 1kao_A 6 VVVLGSGGVGKS 17 (167)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 429
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=54.96 E-value=3.8 Score=41.46 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=17.6
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.++|.|++|+||| |+++.+.+.+
T Consensus 4 ~i~~~G~~g~GKt------t~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKS------TFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHH------HHHHHHHHHC
T ss_pred EEEEEcCCCCCHH------HHHHHHHHHc
Confidence 4689999999999 6666665544
No 430
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=54.83 E-value=4.8 Score=36.80 Aligned_cols=12 Identities=8% Similarity=-0.075 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 8 i~v~G~~~~GKs 19 (168)
T 1z2a_A 8 MVVVGNGAVGKS 19 (168)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 589999999999
No 431
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=54.74 E-value=7.4 Score=44.98 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=24.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEe
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICA 793 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcA 793 (961)
.+++.|.+|+||| ++.+.+...+.+. +.|||++.
T Consensus 10 i~~~sgkGGvGKT-----T~a~~lA~~lA~~--G~rVLlvd 43 (589)
T 1ihu_A 10 YLFFTGKGGVGKT-----SISCATAIRLAEQ--GKRVLLVS 43 (589)
T ss_dssp EEEEECSTTSSHH-----HHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEEeCCCcCHHH-----HHHHHHHHHHHHC--CCcEEEEE
Confidence 5688899999999 5555555554443 77887754
No 432
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=54.33 E-value=5 Score=36.67 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 6 i~v~G~~~~GKs 17 (170)
T 1ek0_A 6 LVLLGEAAVGKS 17 (170)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 433
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=54.26 E-value=7.8 Score=42.40 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEec
Q 002130 744 QILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAP 794 (961)
Q Consensus 744 ~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAP 794 (961)
.++........++-|-.|.||| ++.+.+...+.+...+.|||++..
T Consensus 11 ~l~~~~~~~i~v~sgKGGvGKT-----TvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 11 SLITSTTHKWIFVGGKGGVGKT-----TSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp HHHTCSSCCEEEEEESTTSSHH-----HHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred HHhcCCCcEEEEEeCCCCCcHH-----HHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3443322335677799999999 555544444431035788887644
No 434
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=54.15 E-value=5 Score=46.35 Aligned_cols=23 Identities=4% Similarity=0.028 Sum_probs=17.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
.+++.|.||+||| |++..+.+.+
T Consensus 37 lIvlvGlpGSGKS------Tia~~La~~L 59 (520)
T 2axn_A 37 VIVMVGLPARGKT------YISKKLTRYL 59 (520)
T ss_dssp EEEEECCTTSSHH------HHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHH
Confidence 4688999999999 5666655444
No 435
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=54.02 E-value=3.6 Score=44.62 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=19.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
-+.|.||.|+||| |++.++..++.
T Consensus 172 k~~IvG~nGsGKS------TLlk~L~gl~~ 195 (365)
T 1lw7_A 172 TVAILGGESSGKS------VLVNKLAAVFN 195 (365)
T ss_dssp EEEEECCTTSHHH------HHHHHHHHHTT
T ss_pred eEEEECCCCCCHH------HHHHHHHHHhC
Confidence 4689999999999 77788777654
No 436
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=53.90 E-value=4.8 Score=36.39 Aligned_cols=12 Identities=8% Similarity=-0.105 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 6 i~v~G~~~~GKs 17 (166)
T 2ce2_X 6 LVVVGAGGVGKS 17 (166)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 437
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=53.75 E-value=11 Score=43.97 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=24.3
Q ss_pred CCCCCCCEEEEEECCCCceeEEEEEEEEecccEEEEEECCC
Q 002130 630 PFLLSRDFVYAQRSGGKSKKFQGFLYRVVKWTTVLVEFEED 670 (961)
Q Consensus 630 PsLlvGD~VlL~~~g~~~~~y~G~V~~V~~sd~V~L~f~~~ 670 (961)
+.+..|+.|.+. ++ ..|.|..+++ +.|.+..-.+
T Consensus 45 ~~~~~ge~~~i~--~g----~~g~v~~l~~-~~v~~~~~~~ 78 (510)
T 2ck3_A 45 RNVQAEEMVEFS--SG----LKGMSLNLEP-DNVGVVVFGN 78 (510)
T ss_dssp TTCBTTCEEEET--TS----CEEEEEEECS-SCEEEEESSC
T ss_pred CCCCCCCEEEEC--CC----CeEEEEeccC-CeEEEEEECC
Confidence 367789999983 21 2599999999 7777765443
No 438
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=53.72 E-value=5.1 Score=37.18 Aligned_cols=12 Identities=17% Similarity=-0.100 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 10 i~v~G~~~~GKS 21 (177)
T 1wms_A 10 VILLGDGGVGKS 21 (177)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 439
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=53.70 E-value=4.7 Score=38.98 Aligned_cols=12 Identities=17% Similarity=-0.061 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 32 v~lvG~~g~GKS 43 (191)
T 1oix_A 32 VVLIGDSGVGKS 43 (191)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 589999999999
No 440
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=53.33 E-value=5.5 Score=42.48 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=20.1
Q ss_pred CCceEeccCCCCCCccchHHHHHHHHHHHH
Q 002130 752 SPYLLEGPLCNNFVLSKTGNVVREAVLQIR 781 (961)
Q Consensus 752 ~P~LI~GPPGTGKTls~~g~TLVeaIlQLl 781 (961)
+..+|.|+.|+||| +|.++|..++
T Consensus 25 g~~~i~G~NGsGKS------~ll~ai~~ll 48 (322)
T 1e69_A 25 RVTAIVGPNGSGKS------NIIDAIKWVF 48 (322)
T ss_dssp SEEEEECCTTTCST------HHHHHHHHTS
T ss_pred CcEEEECCCCCcHH------HHHHHHHHHh
Confidence 36799999999999 7888887554
No 441
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=53.24 E-value=8.8 Score=41.04 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=16.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.|+-|.||| |++..+..
T Consensus 6 v~~i~G~~GaGKT------Tll~~l~~ 26 (318)
T 1nij_A 6 VTLLTGFLGAGKT------TLLRHILN 26 (318)
T ss_dssp EEEEEESSSSSCH------HHHHHHHH
T ss_pred EEEEEecCCCCHH------HHHHHHHh
Confidence 5789999999999 55555544
No 442
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=53.11 E-value=5.3 Score=37.04 Aligned_cols=12 Identities=8% Similarity=-0.042 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 11 i~v~G~~~~GKS 22 (182)
T 1ky3_A 11 VIILGDSGVGKT 22 (182)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 443
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=53.01 E-value=4.7 Score=44.53 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=16.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.||+|+||| |++..+.+
T Consensus 9 lI~I~GptgSGKT------tla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKT------ELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHH------HHHHHHHH
T ss_pred eEEEECCCcCcHH------HHHHHHHH
Confidence 4689999999999 55555544
No 444
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=52.91 E-value=5.1 Score=37.02 Aligned_cols=12 Identities=17% Similarity=-0.042 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 7 i~i~G~~~vGKS 18 (175)
T 2nzj_A 7 VVLLGDPGVGKT 18 (175)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCccHH
Confidence 589999999999
No 445
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=52.79 E-value=5.3 Score=37.92 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=11.8
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
-++|.|++|.|||
T Consensus 50 ~i~vvG~~g~GKS 62 (193)
T 2ged_A 50 SIIIAGPQNSGKT 62 (193)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4689999999999
No 446
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=52.71 E-value=5.2 Score=36.69 Aligned_cols=12 Identities=25% Similarity=0.011 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 6 i~v~G~~~~GKs 17 (170)
T 1g16_A 6 ILLIGDSGVGKS 17 (170)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 589999999999
No 447
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=52.44 E-value=89 Score=29.46 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEecccccccccCccHHHHHhhhhcccccCCChhhhhccc
Q 002130 775 EAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANAAFREADGVSDEIFQVSLVERECFSCPPLEELRQY 854 (961)
Q Consensus 775 eaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a~sR~~~~V~~~I~~y~~~~~~~F~~p~~e~L~~~ 854 (961)
+++..+++...+.++||-+.+...++.+.+.|.+. +..+..+.+. ++..-+.... ..|+. .+.
T Consensus 19 ~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~------~~~~~r~~~~---~~f~~------g~~ 81 (165)
T 1fuk_A 19 ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSD------LPQQERDTIM---KEFRS------GSS 81 (165)
T ss_dssp HHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTT------SCHHHHHHHH---HHHHT------TSC
T ss_pred HHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECC------CCHHHHHHHH---HHHHc------CCC
Confidence 34445555556789999999999999999999862 3344444432 2222111100 11111 356
Q ss_pred eEEEEeeccchhhhccCCCCCCccEEEEecC
Q 002130 855 KVISSTFVSSFRLHNQGITAGHFSHIFLIDA 885 (961)
Q Consensus 855 rVVvtT~ssag~L~~~~~~~g~FdhVIIDEA 885 (961)
+|+|+|-..+ .|+.-...++||.-+.
T Consensus 82 ~vlv~T~~~~-----~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 82 RILISTDLLA-----RGIDVQQVSLVINYDL 107 (165)
T ss_dssp SEEEEEGGGT-----TTCCCCSCSEEEESSC
T ss_pred EEEEEcChhh-----cCCCcccCCEEEEeCC
Confidence 7899885433 2333346778877554
No 448
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=52.40 E-value=5.6 Score=36.14 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 7 i~v~G~~~~GKs 18 (168)
T 1u8z_A 7 VIMVGSGGVGKS 18 (168)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 449
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=52.17 E-value=1e+02 Score=32.74 Aligned_cols=111 Identities=12% Similarity=-0.020 Sum_probs=64.1
Q ss_pred CCCCCCEEEEEECCCCceeEEEEEEEEecccEEEEEECCCcccCCCCCCcEEEEEeeChhHHHHHHHHHHHHhhhhhccc
Q 002130 631 FLLSRDFVYAQRSGGKSKKFQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNY 710 (961)
Q Consensus 631 sLlvGD~VlL~~~g~~~~~y~G~V~~V~~sd~V~L~f~~~f~~~~~~~~~~~V~F~lNR~t~rR~h~ALd~l~~~ll~~i 710 (961)
.+..||.|.|.. +....|.|.|..+.+ +.+.+++.............+.+-+-+-+ -.||.+.|+.+.+ ++.+-
T Consensus 36 Rl~~Gd~i~l~d--g~G~~~~a~I~~~~~-~~~~~~i~~~~~~~~e~~~~v~L~~al~K--~~r~e~ilqkatE-LGV~~ 109 (268)
T 1vhk_A 36 RMNEGDQIICCS--QDGFEAKCELQSVSK-DKVSCLVIEWTNENRELPIKVYIASGLPK--GDKLEWIIQKGTE-LGAHA 109 (268)
T ss_dssp CCCTTCEEEEEC--TTSCEEEEEEEEECS-SEEEEEEEEECCCCCCCSSEEEEEEECCS--TTHHHHHHHHHHH-TTCCE
T ss_pred cCCCCCEEEEEe--CCCCEEEEEEEEecC-CEEEEEEEEEeccCCCCCccEEEEEeeec--CccHHHHHHHHHH-hCcCE
Confidence 577899999874 345689999999999 88888876543322112223455444444 3788888888874 44444
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcc
Q 002130 711 LFPDCASRKSIPYPSLCPYSNYKLDSDSNSAVHQILSFE 749 (961)
Q Consensus 711 LFP~~~~~r~ip~~~~~~~~n~~LN~eQr~AV~~ILs~~ 749 (961)
+.|-...+....... .-...++..-|+-|+..+-++.
T Consensus 110 I~p~~s~Rsv~~~~~--~~~~kk~~Rw~~i~~eAaeQs~ 146 (268)
T 1vhk_A 110 FIPFQAARSVVKLDD--KKAKKKRERWTKIAKEAAEQSY 146 (268)
T ss_dssp EEEECCTTCCCC-----------HHHHHHHHHHHHHHTT
T ss_pred EEEEEeeeeeeeccc--chhhhHHHHHHHHHHHHHHHcC
Confidence 555433211111100 0001345677888888777664
No 450
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=51.93 E-value=5.7 Score=36.38 Aligned_cols=12 Identities=17% Similarity=-0.133 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 9 i~v~G~~~~GKS 20 (170)
T 1z0j_A 9 VCLLGDTGVGKS 20 (170)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 589999999999
No 451
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=51.58 E-value=44 Score=35.49 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=41.3
Q ss_pred CCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHHhhCCCCceEeccc
Q 002130 760 LCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECLMKDIPASEMFRANA 820 (961)
Q Consensus 760 PGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL~~~l~~~~ilRV~a 820 (961)
...+|. ..+++++.+.+....+.++||-+++...++.+.+.|.+. +....++..
T Consensus 340 ~~~~k~-----~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g 393 (494)
T 1wp9_A 340 LDHPKM-----DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD--GIKAKRFVG 393 (494)
T ss_dssp CSCHHH-----HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT--TCCEEEECC
T ss_pred CCChHH-----HHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc--CCCcEEEec
Confidence 345677 677777777665567889999999999999999999864 455666654
No 452
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=51.41 E-value=5.9 Score=36.17 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 9 i~v~G~~~~GKs 20 (170)
T 1r2q_A 9 LVLLGESAVGKS 20 (170)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 453
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=51.41 E-value=9.5 Score=39.87 Aligned_cols=32 Identities=9% Similarity=-0.034 Sum_probs=21.4
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
+.|.|-.|+||| ++.+.+...+.+. +.|||+.
T Consensus 44 I~v~~KGGvGKT-----T~a~nLA~~La~~--G~~Vlli 75 (307)
T 3end_A 44 FAVYGKGGIGKS-----TTSSNLSAAFSIL--GKRVLQI 75 (307)
T ss_dssp EEEECSTTSSHH-----HHHHHHHHHHHHT--TCCEEEE
T ss_pred EEEECCCCccHH-----HHHHHHHHHHHHC--CCeEEEE
Confidence 445599999999 5555555444443 7788775
No 454
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=51.26 E-value=4.6 Score=44.19 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=19.0
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
.++|.||.|+||| |++.++..++.
T Consensus 177 ~i~ivG~sGsGKS------Tll~~l~~~~~ 200 (361)
T 2gza_A 177 VIVVAGETGSGKT------TLMKALMQEIP 200 (361)
T ss_dssp CEEEEESSSSCHH------HHHHHHHTTSC
T ss_pred EEEEECCCCCCHH------HHHHHHHhcCC
Confidence 6899999999999 66667666554
No 455
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=51.16 E-value=5.6 Score=37.25 Aligned_cols=12 Identities=17% Similarity=-0.139 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 6 v~lvG~~gvGKS 17 (165)
T 2wji_A 6 IALIGNPNVGKS 17 (165)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 456
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=50.85 E-value=6 Score=36.33 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 9 i~v~G~~~~GKs 20 (170)
T 1z08_A 9 VVLLGEGCVGKT 20 (170)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECcCCCCHH
Confidence 589999999999
No 457
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=50.77 E-value=15 Score=42.75 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=27.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILICAPWNRTCDKLMECL 806 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVcAPSNsAaD~LleRL 806 (961)
.++|.|++|+||| |++.++.+.+... +.++.+.. .|.+.+.+
T Consensus 374 ~I~l~G~~GsGKS------Tia~~La~~L~~~-G~~~~~ld-----~D~ir~~l 415 (546)
T 2gks_A 374 CVWLTGLPCAGKS------TIAEILATMLQAR-GRKVTLLD-----GDVVRTHL 415 (546)
T ss_dssp EEEEECSTTSSHH------HHHHHHHHHHHHT-TCCEEEEC-----HHHHHHHT
T ss_pred EEEccCCCCCCHH------HHHHHHHHHhhhc-CCeEEEEC-----chHhhhhh
Confidence 4678899999999 7777777655442 44554443 56654443
No 458
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=50.66 E-value=6.1 Score=36.95 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 14 i~v~G~~~~GKS 25 (195)
T 3bc1_A 14 FLALGDSGVGKT 25 (195)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 459
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=50.65 E-value=5.8 Score=36.50 Aligned_cols=12 Identities=17% Similarity=-0.006 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 5 i~ivG~~~~GKS 16 (169)
T 3q85_A 5 VMLVGESGVGKS 16 (169)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 460
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=50.57 E-value=4.9 Score=44.45 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=12.1
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
.++|.||.|+|||
T Consensus 42 lIvI~GPTgsGKT 54 (339)
T 3a8t_A 42 LLVLMGATGTGKS 54 (339)
T ss_dssp EEEEECSTTSSHH
T ss_pred eEEEECCCCCCHH
Confidence 5789999999999
No 461
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=50.53 E-value=6.2 Score=36.01 Aligned_cols=12 Identities=8% Similarity=-0.128 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|.+|+|||
T Consensus 6 i~v~G~~~~GKs 17 (167)
T 1c1y_A 6 LVVLGSGGVGKS 17 (167)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=50.41 E-value=2.8 Score=43.02 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=16.2
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.++|.|++|+||| |+++.+.+
T Consensus 26 ~I~ieG~~GsGKS------T~~~~L~~ 46 (263)
T 1p5z_B 26 KISIEGNIAAGKS------TFVNILKQ 46 (263)
T ss_dssp EEEEECSTTSSHH------HHHTTTGG
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 5689999999999 66655544
No 463
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=50.40 E-value=5.9 Score=36.25 Aligned_cols=12 Identities=8% Similarity=-0.274 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 6 i~v~G~~~~GKs 17 (172)
T 2erx_A 6 VAVFGAGGVGKS 17 (172)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 464
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=50.40 E-value=5.9 Score=36.63 Aligned_cols=12 Identities=8% Similarity=0.016 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 17 i~v~G~~~~GKs 28 (179)
T 2y8e_A 17 LVFLGEQSVGKT 28 (179)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 465
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=50.39 E-value=4 Score=44.20 Aligned_cols=33 Identities=9% Similarity=0.074 Sum_probs=22.3
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.++|.||.|+||| |+..++..++.. ....|.+-
T Consensus 173 ~v~i~G~~GsGKT------Tll~~l~g~~~~-~~g~i~i~ 205 (330)
T 2pt7_A 173 NVIVCGGTGSGKT------TYIKSIMEFIPK-EERIISIE 205 (330)
T ss_dssp CEEEEESTTSCHH------HHHHHGGGGSCT-TSCEEEEE
T ss_pred EEEEECCCCCCHH------HHHHHHhCCCcC-CCcEEEEC
Confidence 6899999999999 566666665542 23344443
No 466
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=50.32 E-value=1.1e+02 Score=31.88 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEECCCCceeEEEEEEEEecccEEEEEECCCcccCCCCCCcEEEEEeeChhHHHHHHHHHHHHhhhhhccc
Q 002130 631 FLLSRDFVYAQRSGGKSKKFQGFLYRVVKWTTVLVEFEEDFHSQHQPNHKYDVSFSFNRVCLKRAHEAVADASDSLFRNY 710 (961)
Q Consensus 631 sLlvGD~VlL~~~g~~~~~y~G~V~~V~~sd~V~L~f~~~f~~~~~~~~~~~V~F~lNR~t~rR~h~ALd~l~~~ll~~i 710 (961)
.+..||.|.|.. +....|.|.|.++.+ +.+.+++.............+.+-+.+-+ -.||.+.|+.+.+ ++.+-
T Consensus 40 Rl~~Gd~v~l~d--g~G~~~~a~I~~~~~-~~~~~~i~~~~~~~~e~~~~i~L~~al~K--~~r~e~ilqkatE-LGV~~ 113 (234)
T 1z85_A 40 RLKEGDVIEATD--GNGFSYTCILKSLKK-KTAAAKIVKVEEKEKEPTEKLSVVVPIGR--WERTRFLIEKCVE-LGVDE 113 (234)
T ss_dssp TCCTTCEEEEEC--SBSEEEEEEEEEECS-SCEEEEEEEEEECCCCCSSCEEEEEECCC--HHHHHHHHHHHHH-TTCSE
T ss_pred cCCCCCEEEEEe--CCCCEEEEEEEEecC-CEEEEEEEEEeccCCCCCceEEEEEeccc--hHHHHHHHHHHHH-hCCCE
Confidence 577899998873 345789999999999 88888775543222112234555555544 4788888988874 44444
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhccC
Q 002130 711 LFPDCASRKSIPYPSLCPYSNYKLDSDSNSAVHQILSFEG 750 (961)
Q Consensus 711 LFP~~~~~r~ip~~~~~~~~n~~LN~eQr~AV~~ILs~~~ 750 (961)
+.|-... .... ..++..-|+-|+..+-++.+
T Consensus 114 I~p~~s~--s~~~-------~~k~eRw~~i~~eAaeQs~R 144 (234)
T 1z85_A 114 IFFHKFE--RSQH-------EISLDKAKIVVREAAKQCKR 144 (234)
T ss_dssp EEEECCT--TCCC-------CCCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEE--EEec-------hhhHHHHHHHHHHHHHHcCC
Confidence 4443221 1111 23566778888887776543
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=50.30 E-value=5.3 Score=43.86 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=11.8
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
.++|.||.|+|||
T Consensus 12 ~i~i~GptgsGKt 24 (316)
T 3foz_A 12 AIFLMGPTASGKT 24 (316)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCccCHH
Confidence 5688999999999
No 468
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=50.15 E-value=6.3 Score=36.95 Aligned_cols=12 Identities=17% Similarity=-0.022 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 10 i~v~G~~~~GKS 21 (208)
T 3clv_A 10 TVLLGESSVGKS 21 (208)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 469
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=48.79 E-value=6.8 Score=36.64 Aligned_cols=12 Identities=8% Similarity=-0.094 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 7 i~v~G~~~~GKS 18 (189)
T 4dsu_A 7 LVVVGADGVGKS 18 (189)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 470
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=48.70 E-value=6 Score=43.56 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=11.8
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
.++|.||.|+|||
T Consensus 5 ~i~i~GptgsGKt 17 (322)
T 3exa_A 5 LVAIVGPTAVGKT 17 (322)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCcCCHH
Confidence 5689999999999
No 471
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=48.60 E-value=6.9 Score=36.14 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|.+|+|||
T Consensus 18 i~v~G~~~~GKS 29 (179)
T 1z0f_A 18 YIIIGDMGVGKS 29 (179)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 472
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=48.59 E-value=4.1 Score=42.02 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=24.4
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.+.|.||.|+||| |+..+|.-++.. ....|.+.
T Consensus 30 ~~~i~G~nGsGKS------TLl~~l~Gl~~p-~~G~i~~~ 62 (243)
T 1mv5_A 30 IIAFAGPSGGGKS------TIFSLLERFYQP-TAGEITID 62 (243)
T ss_dssp EEEEECCTTSSHH------HHHHHHTTSSCC-SBSCEEET
T ss_pred EEEEECCCCCCHH------HHHHHHhcCCCC-CCcEEEEC
Confidence 6789999999999 777777766542 24567664
No 473
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=48.40 E-value=6.2 Score=36.55 Aligned_cols=12 Identities=17% Similarity=-0.003 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 12 i~v~G~~~~GKs 23 (181)
T 3tw8_B 12 LLIIGDSGVGKS 23 (181)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 474
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=48.33 E-value=6.6 Score=36.35 Aligned_cols=12 Identities=8% Similarity=-0.158 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|.+|.|||
T Consensus 12 i~v~G~~~~GKs 23 (181)
T 2fn4_A 12 LVVVGGGGVGKS 23 (181)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 475
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=48.33 E-value=5.9 Score=36.34 Aligned_cols=12 Identities=25% Similarity=0.019 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 5 i~~vG~~~~GKS 16 (166)
T 3q72_A 5 VLLLGAPGVGKS 16 (166)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 476
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=48.16 E-value=6.7 Score=36.42 Aligned_cols=12 Identities=8% Similarity=0.005 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 9 i~v~G~~~~GKs 20 (178)
T 2hxs_A 9 IVVLGDGASGKT 20 (178)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 589999999999
No 477
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=48.16 E-value=7.5 Score=45.41 Aligned_cols=32 Identities=6% Similarity=-0.073 Sum_probs=24.1
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEE
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRIL 790 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RIL 790 (961)
.++|.|++|+||| ||+.++...+....+.+|.
T Consensus 371 iI~LiG~sGSGKS------TLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 371 TVFFTGLSGAGKS------TLARALAARLMEMGGRCVT 402 (552)
T ss_dssp EEEEEESSCHHHH------HHHHHHHHHHHTTCSSCEE
T ss_pred EEEEECCCCChHH------HHHHHHHHhhcccCCceEE
Confidence 5789999999999 7788888777653333563
No 478
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=48.08 E-value=7 Score=36.37 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 15 i~v~G~~~~GKS 26 (181)
T 2efe_B 15 LVLLGDVGAGKS 26 (181)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECcCCCCHH
Confidence 589999999999
No 479
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=47.75 E-value=7.2 Score=37.11 Aligned_cols=12 Identities=17% Similarity=-0.028 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 28 i~v~G~~~~GKS 39 (193)
T 2oil_A 28 VVLIGESGVGKT 39 (193)
T ss_dssp EEEESSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 589999999999
No 480
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=47.60 E-value=7.4 Score=35.61 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=11.1
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 3 i~~~G~~~~GKs 14 (164)
T 1r8s_A 3 ILMVGLDAAGKT 14 (164)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 479999999999
No 481
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=47.49 E-value=6.4 Score=37.31 Aligned_cols=13 Identities=15% Similarity=-0.066 Sum_probs=11.8
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
-++|.|++|.|||
T Consensus 25 ~i~v~G~~~~GKS 37 (195)
T 1svi_A 25 EIALAGRSNVGKS 37 (195)
T ss_dssp EEEEEEBTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3689999999999
No 482
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=47.36 E-value=7 Score=36.27 Aligned_cols=13 Identities=8% Similarity=-0.023 Sum_probs=11.7
Q ss_pred CceEeccCCCCCC
Q 002130 753 PYLLEGPLCNNFV 765 (961)
Q Consensus 753 P~LI~GPPGTGKT 765 (961)
-++|.|++|.|||
T Consensus 10 ~i~v~G~~~~GKs 22 (178)
T 2lkc_A 10 VVTIMGHVDHGKT 22 (178)
T ss_dssp EEEEESCTTTTHH
T ss_pred EEEEECCCCCCHH
Confidence 4689999999999
No 483
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=47.35 E-value=6.5 Score=37.48 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 5 v~ivG~~gvGKS 16 (184)
T 2zej_A 5 LMIVGNTGSGKT 16 (184)
T ss_dssp EEEESCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 484
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=47.29 E-value=7.1 Score=38.58 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=20.8
Q ss_pred eEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEEE
Q 002130 755 LLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILIC 792 (961)
Q Consensus 755 LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILVc 792 (961)
.|.|-.|+||| ++.+.+. ..+.+ .+.|||+.
T Consensus 4 ~vs~kGGvGKT-----t~a~~LA-~~la~-~g~~Vlli 34 (254)
T 3kjh_A 4 AVAGKGGVGKT-----TVAAGLI-KIMAS-DYDKIYAV 34 (254)
T ss_dssp EEECSSSHHHH-----HHHHHHH-HHHTT-TCSCEEEE
T ss_pred EEecCCCCCHH-----HHHHHHH-HHHHH-CCCeEEEE
Confidence 34899999999 5544444 44443 37888775
No 485
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=47.06 E-value=9.6 Score=44.31 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCCCCCCEEEEEECCCCceeEEEEEEEEecccEEEEEECCC
Q 002130 630 PFLLSRDFVYAQRSGGKSKKFQGFLYRVVKWTTVLVEFEED 670 (961)
Q Consensus 630 PsLlvGD~VlL~~~g~~~~~y~G~V~~V~~sd~V~L~f~~~ 670 (961)
+.+..|+.|.+. ++ ..|.|..+++ +.+.+..-.+
T Consensus 45 ~~~~~ge~~~i~--~g----~~g~v~~l~~-~~v~~~~~~~ 78 (502)
T 2qe7_A 45 EKVMAGELLEFE--NG----VMGMAQNLEE-DNVGVVILGP 78 (502)
T ss_dssp TTCBTTEEEEET--TS----CEEEEEEEET-TEEEEEECSC
T ss_pred CCCCCCCEEEEC--CC----CEEEEEEecC-CeEEEEEecC
Confidence 467889999883 21 2599999999 8887765443
No 486
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=47.01 E-value=4.3 Score=40.09 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=20.8
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHHHHHh
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQIRRR 783 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQLlk~ 783 (961)
.+.|.|+.|+||| |++.++..++..
T Consensus 4 ~v~IvG~SGsGKS------TL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKT------TLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHH------HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHHHhhh
Confidence 3579999999999 777888888775
No 487
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=46.95 E-value=8 Score=43.61 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhccCCCCceEeccCCCCCCccchHHHHHHHHHHHHH
Q 002130 737 DSNSAVHQILSFEGQSPYLLEGPLCNNFVLSKTGNVVREAVLQIRR 782 (961)
Q Consensus 737 eQr~AV~~ILs~~~~~P~LI~GPPGTGKTls~~g~TLVeaIlQLlk 782 (961)
..+++++.+... ...+.|.||+|.||| |++.+|..++.
T Consensus 57 ~i~~~L~~~~~~--~~~valvG~nGaGKS------TLln~L~Gl~~ 94 (413)
T 1tq4_A 57 AISDALKEIDSS--VLNVAVTGETGSGKS------SFINTLRGIGN 94 (413)
T ss_dssp HHHHHHHHHHHC--CEEEEEEECTTSSHH------HHHHHHHTCCT
T ss_pred hhhhhhhhcccC--CeEEEEECCCCCcHH------HHHHHHhCCCC
Confidence 344455544433 235789999999999 66677665443
No 488
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=46.92 E-value=7.6 Score=35.66 Aligned_cols=12 Identities=17% Similarity=-0.042 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 10 i~v~G~~~~GKs 21 (171)
T 1upt_A 10 ILILGLDGAGKT 21 (171)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 489
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=46.90 E-value=7.6 Score=43.73 Aligned_cols=21 Identities=5% Similarity=0.069 Sum_probs=15.7
Q ss_pred CceEeccCCCCCCccchHHHHHHHHHH
Q 002130 753 PYLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 753 P~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
.+++.|.||+||| ||+..+.+
T Consensus 41 ~IvlvGlpGsGKS------Tia~~La~ 61 (469)
T 1bif_A 41 LIVMVGLPARGKT------YISKKLTR 61 (469)
T ss_dssp EEEEECCTTSSHH------HHHHHHHH
T ss_pred EEEEECCCCCCHH------HHHHHHHH
Confidence 4688999999999 45555443
No 490
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=46.79 E-value=7.6 Score=36.75 Aligned_cols=12 Identities=8% Similarity=-0.105 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|.+|+|||
T Consensus 24 i~vvG~~~~GKS 35 (190)
T 3con_A 24 LVVVGAGGVGKS 35 (190)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 589999999999
No 491
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=46.70 E-value=7.6 Score=40.87 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=26.4
Q ss_pred CccEEEEecCCCCChHHHHHHHhccccCCCeEEEEeCCCCCC
Q 002130 876 HFSHIFLIDASSATEPETMIVLGNLANENTRVIVTGAPHNSP 917 (961)
Q Consensus 876 ~FdhVIIDEASQAtEPEaLIPLa~LA~~~trVVLaGDpkQLp 917 (961)
+.-++||||.+..+.+.-+--+..+....+-|+++.....|.
T Consensus 113 l~~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 113 HCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMT 154 (270)
T ss_dssp CEEEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTGGGSC
T ss_pred eeeeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEeccccCC
Confidence 445799999988888876655555555534444444444443
No 492
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=46.67 E-value=7.6 Score=37.04 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=11.2
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 17 i~v~G~~~~GKS 28 (206)
T 2bov_A 17 VIMVGSGGVGKS 28 (206)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 493
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=46.46 E-value=7.3 Score=36.69 Aligned_cols=12 Identities=17% Similarity=-0.139 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 10 i~lvG~~gvGKS 21 (188)
T 2wjg_A 10 IALIGNPNVGKS 21 (188)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 494
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=46.45 E-value=7.7 Score=37.15 Aligned_cols=12 Identities=8% Similarity=-0.042 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 11 i~v~G~~~~GKS 22 (207)
T 1vg8_A 11 VIILGDSGVGKT 22 (207)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 589999999999
No 495
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=46.37 E-value=7.8 Score=36.67 Aligned_cols=12 Identities=25% Similarity=0.030 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|+|||
T Consensus 19 i~v~G~~~~GKS 30 (196)
T 3tkl_A 19 LLLIGDSGVGKS 30 (196)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 589999999999
No 496
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=46.29 E-value=7.9 Score=36.03 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=11.3
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 21 i~v~G~~~~GKS 32 (187)
T 2a9k_A 21 VIMVGSGGVGKS 32 (187)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 589999999999
No 497
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=46.05 E-value=7 Score=36.75 Aligned_cols=12 Identities=8% Similarity=-0.177 Sum_probs=11.4
Q ss_pred ceEeccCCCCCC
Q 002130 754 YLLEGPLCNNFV 765 (961)
Q Consensus 754 ~LI~GPPGTGKT 765 (961)
++|.|++|.|||
T Consensus 26 i~v~G~~~~GKS 37 (195)
T 3pqc_A 26 VAFVGRSNVGKS 37 (195)
T ss_dssp EEEEEBTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999999
No 498
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=46.03 E-value=8 Score=35.95 Aligned_cols=20 Identities=10% Similarity=-0.056 Sum_probs=0.0
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQ 779 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQ 779 (961)
++|.|.+|+||| +|+..+..
T Consensus 13 i~v~G~~~~GKs------sli~~l~~ 32 (180)
T 2g6b_A 13 VMLVGDSGVGKT------CLLVRFKD 32 (180)
T ss_dssp EEEECSTTSSHH------HHHHHHHH
T ss_pred EEEECcCCCCHH------HHHHHHHh
No 499
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=45.96 E-value=4.2 Score=42.54 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred ceEeccCCCCCCccchHHHHHHHHHHHHHhCCCCeEEE
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVLQIRRRSPKSRILI 791 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIlQLlk~~p~~RILV 791 (961)
+.|.||.|+||| |+..+|..++. +...|.+
T Consensus 49 ~~i~G~nGsGKS------TLl~~l~Gl~~--~~G~I~i 78 (260)
T 2ghi_A 49 CALVGHTGSGKS------TIAKLLYRFYD--AEGDIKI 78 (260)
T ss_dssp EEEECSTTSSHH------HHHHHHTTSSC--CEEEEEE
T ss_pred EEEECCCCCCHH------HHHHHHhccCC--CCeEEEE
No 500
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=45.94 E-value=7.1 Score=36.66 Aligned_cols=19 Identities=5% Similarity=-0.060 Sum_probs=0.0
Q ss_pred ceEeccCCCCCCccchHHHHHHHHH
Q 002130 754 YLLEGPLCNNFVLSKTGNVVREAVL 778 (961)
Q Consensus 754 ~LI~GPPGTGKTls~~g~TLVeaIl 778 (961)
++|.|++|.||| +++..+.
T Consensus 4 i~v~G~~~~GKS------sli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKS------TLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHH------HHHHHHH
T ss_pred EEEECCCCCCHH------HHHHHHh
Done!