BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002131
         (961 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P87169|MAD1_SCHPO Spindle assembly checkpoint component mad1 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=mad1 PE=3 SV=1
          Length = 689

 Score = 33.5 bits (75), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 114/513 (22%), Positives = 216/513 (42%), Gaps = 93/513 (18%)

Query: 425 ASAKEELRMVKADLESRTRRLEREKVELQSGL-----------------EKELDRRSSDW 467
           AS + +L  +K DL+ +    ERE++ELQ  L                 EK+L+ +S+ +
Sbjct: 58  ASLEFQLENLKNDLKRKELEFEREQIELQRKLAEEHEQKNSLQLRLTLVEKQLEEQSTSY 117

Query: 468 SFKLEKYQMEEQRLRERVREL--------AEQNVSLQREVSTFNEREAESRSMITHSEQQ 519
             ++E+ + E++  + ++ EL        AE    +++     +E+  E   M+++   Q
Sbjct: 118 QKEIEEVRNEKEATQVKIHELLDAKWKEIAELKTQIEKNDQALSEKNHEV--MVSNQALQ 175

Query: 520 LKD--LTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSIT 577
           +KD  LT   + +     D R+ L    ++  AAE  L  +  + ++ E   K +  SI 
Sbjct: 176 MKDTNLTNLEKLF----ADSREQLETKCKELAAAEQQLQELSVHNQQLEESIKQVSSSI- 230

Query: 578 RLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIES 637
            L +  +EQ   I+ L    + Q E+   L   +++V +L+ E+     +E  L R  E 
Sbjct: 231 ELEKINAEQRLQISELEKLKAAQEERIEKLSSNNRNVEILKEEK---NDLESKLYR-FEE 286

Query: 638 YRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKELWTRICCLQNQGISMLNESTQLCS 697
           YR +V +L  EN  +   L  + K      +   + +  ++  LQN   ++    + L S
Sbjct: 287 YRDKVATLELENEKIQTEL-NSWKSLITNELPTPEAVSNKLVFLQNTNANLGERVSSLES 345

Query: 698 QL------------------LEFIKGKAGQLSE-----------TKQGIEFIKNGL---- 724
           QL                  +  ++ K  +L E             Q I+ ++  L    
Sbjct: 346 QLSNKPANQPLGANEKDAAHITELETKLKELHEQNRRLQRQKSLATQEIDLLRENLKSYD 405

Query: 725 DGQFII---ESDMK-----------VQGFKRKIESLITSLQTMSALLHEKSSLVASKSQS 770
           D + I+    +DMK           V  +K K+ES+  SL        ++ SL   + ++
Sbjct: 406 DEEAILSEKNTDMKKLERIEGLVKLVDEYKLKLESMPVSLDVDET--SDEVSLQKRRRKN 463

Query: 771 LHEDVNLSGKLNDQTAGEIMRSELKAETLLTSLLREKLYSKELEVEQLQAELATAVRGND 830
            H+D     +L  +    +   ++K +T + + LRE++ + E  +  L+ ELA     N 
Sbjct: 464 EHKDAGYVTELYRKNQHLLF--QVKEKTNIEAFLREQIITLESSIATLRQELAQVTEINS 521

Query: 831 ILRCEVQNALDNLSCVTHKLKDLELQMLKKDES 863
              C V     N +    ++K  +L+ML  + S
Sbjct: 522 ---CRVLQHRSNPTLKYERIKAAQLEMLNAENS 551


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.128    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 331,841,448
Number of Sequences: 539616
Number of extensions: 14187240
Number of successful extensions: 69707
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 2645
Number of HSP's that attempted gapping in prelim test: 53543
Number of HSP's gapped (non-prelim): 10605
length of query: 961
length of database: 191,569,459
effective HSP length: 127
effective length of query: 834
effective length of database: 123,038,227
effective search space: 102613881318
effective search space used: 102613881318
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)