Query 002131
Match_columns 961
No_of_seqs 181 out of 194
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 17:12:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0250 DNA repair protein RAD 99.9 2.3E-21 5E-26 233.2 56.6 516 401-939 194-811 (1074)
2 COG1196 Smc Chromosome segrega 99.9 5.2E-20 1.1E-24 232.3 61.0 185 394-578 145-341 (1163)
3 TIGR02169 SMC_prok_A chromosom 99.9 2.4E-16 5.2E-21 197.1 62.6 61 395-456 144-207 (1164)
4 TIGR02168 SMC_prok_B chromosom 99.8 9.4E-14 2E-18 173.3 61.5 60 396-456 147-209 (1179)
5 PRK02224 chromosome segregatio 99.6 1.3E-09 2.9E-14 134.8 56.6 252 394-658 139-402 (880)
6 PRK04863 mukB cell division pr 99.5 7.9E-10 1.7E-14 142.3 54.1 128 400-527 275-413 (1486)
7 KOG0964 Structural maintenance 99.5 6.7E-09 1.5E-13 125.0 55.0 332 285-662 74-461 (1200)
8 KOG0996 Structural maintenance 99.5 4.4E-08 9.5E-13 120.2 58.7 352 370-731 225-649 (1293)
9 KOG0933 Structural maintenance 99.5 4.6E-08 1E-12 118.5 57.4 303 382-684 128-494 (1174)
10 TIGR02168 SMC_prok_B chromosom 99.5 5.2E-08 1.1E-12 122.4 61.0 163 434-596 247-415 (1179)
11 TIGR02169 SMC_prok_A chromosom 99.5 9.9E-08 2.1E-12 120.4 63.1 222 434-658 245-473 (1164)
12 COG1196 Smc Chromosome segrega 99.4 2.7E-08 5.9E-13 127.1 56.1 250 410-662 225-489 (1163)
13 PRK03918 chromosome segregatio 99.4 1.5E-07 3.3E-12 116.5 58.7 21 401-421 142-162 (880)
14 PRK02224 chromosome segregatio 99.4 3.3E-07 7.2E-12 113.8 56.7 39 559-597 355-393 (880)
15 KOG0018 Structural maintenance 99.3 2.2E-07 4.8E-12 113.5 50.7 535 377-925 113-828 (1141)
16 PRK01156 chromosome segregatio 99.3 9.6E-07 2.1E-11 110.1 57.9 28 394-421 139-166 (895)
17 KOG0161 Myosin class II heavy 99.3 9.6E-07 2.1E-11 115.3 55.1 225 434-661 909-1146(1930)
18 PF12128 DUF3584: Protein of u 99.2 8.5E-06 1.8E-10 105.0 61.2 372 434-856 275-671 (1201)
19 KOG0250 DNA repair protein RAD 99.2 4.1E-06 8.9E-11 103.4 54.6 249 418-676 227-486 (1074)
20 PRK03918 chromosome segregatio 99.2 6.6E-06 1.4E-10 102.1 57.2 40 863-902 660-699 (880)
21 TIGR00606 rad50 rad50. This fa 99.2 6.2E-06 1.4E-10 107.1 57.5 211 372-589 143-362 (1311)
22 KOG0161 Myosin class II heavy 99.2 2.8E-06 6E-11 111.2 53.8 142 801-942 1381-1536(1930)
23 TIGR00606 rad50 rad50. This fa 99.1 1.4E-05 3E-10 103.9 54.3 125 530-656 749-873 (1311)
24 KOG0996 Structural maintenance 99.1 4.9E-05 1.1E-09 94.4 53.3 194 465-660 408-613 (1293)
25 KOG4674 Uncharacterized conser 99.0 8.4E-05 1.8E-09 96.5 52.6 212 434-645 799-1037(1822)
26 PRK01156 chromosome segregatio 98.9 0.00027 5.8E-09 88.7 55.6 33 614-646 411-443 (895)
27 PF10174 Cast: RIM-binding pro 98.9 8.7E-06 1.9E-10 99.8 38.4 405 482-951 2-431 (775)
28 KOG4674 Uncharacterized conser 98.9 0.00022 4.7E-09 92.9 50.7 451 426-941 45-498 (1822)
29 KOG0933 Structural maintenance 98.8 0.00021 4.5E-09 87.9 47.4 197 485-692 296-519 (1174)
30 KOG0964 Structural maintenance 98.8 0.0017 3.7E-08 80.0 54.2 227 434-663 231-504 (1200)
31 PHA02562 46 endonuclease subun 98.8 1.2E-05 2.6E-10 95.0 34.2 28 394-421 140-167 (562)
32 PF10174 Cast: RIM-binding pro 98.8 0.0004 8.8E-09 85.6 46.8 185 470-657 225-409 (775)
33 KOG0979 Structural maintenance 98.8 0.0021 4.6E-08 79.6 52.2 191 400-597 145-355 (1072)
34 PF12128 DUF3584: Protein of u 98.6 0.0097 2.1E-07 77.5 60.4 32 868-899 677-708 (1201)
35 PF00261 Tropomyosin: Tropomyo 98.6 5E-05 1.1E-09 81.6 27.3 152 437-596 5-156 (237)
36 PF07888 CALCOCO1: Calcium bin 98.5 0.00061 1.3E-08 80.7 37.1 230 465-704 216-448 (546)
37 PF00261 Tropomyosin: Tropomyo 98.5 7.1E-05 1.5E-09 80.4 25.8 184 470-656 44-234 (237)
38 KOG4673 Transcription factor T 98.5 0.01 2.2E-07 71.2 61.1 294 385-691 333-662 (961)
39 KOG1029 Endocytic adaptor prot 98.4 0.00024 5.2E-09 85.1 30.5 177 495-674 407-590 (1118)
40 PF05701 WEMBL: Weak chloropla 98.4 0.012 2.7E-07 70.2 47.2 142 802-943 305-446 (522)
41 COG0419 SbcC ATPase involved i 98.3 0.028 6E-07 71.3 57.1 28 394-421 144-171 (908)
42 KOG1029 Endocytic adaptor prot 98.3 0.0011 2.4E-08 79.7 33.1 187 458-661 403-591 (1118)
43 PRK04863 mukB cell division pr 98.3 0.023 5.1E-07 75.0 48.1 191 466-658 297-488 (1486)
44 KOG0979 Structural maintenance 98.3 0.023 5E-07 70.9 44.9 301 338-662 45-361 (1072)
45 KOG0976 Rho/Rac1-interacting s 98.3 0.024 5.2E-07 68.9 48.0 117 825-955 408-537 (1265)
46 PF00038 Filament: Intermediat 98.3 0.002 4.3E-08 71.3 32.0 242 438-684 16-277 (312)
47 PF06160 EzrA: Septation ring 98.3 0.027 5.9E-07 67.9 43.5 127 465-602 104-239 (560)
48 PHA02562 46 endonuclease subun 98.2 0.00047 1E-08 81.6 28.0 10 735-744 465-474 (562)
49 KOG0018 Structural maintenance 98.2 0.029 6.3E-07 70.4 43.2 49 565-616 301-349 (1141)
50 PF07888 CALCOCO1: Calcium bin 98.2 0.0031 6.8E-08 74.9 33.9 45 620-664 351-395 (546)
51 KOG0971 Microtubule-associated 98.2 0.0017 3.7E-08 79.2 31.1 168 436-604 279-447 (1243)
52 KOG0977 Nuclear envelope prote 98.2 0.003 6.6E-08 75.0 31.8 144 437-580 60-217 (546)
53 KOG0977 Nuclear envelope prote 98.2 0.0016 3.5E-08 77.2 29.3 222 434-661 107-370 (546)
54 PRK04778 septation ring format 98.1 0.046 1E-06 66.0 42.2 112 837-948 351-471 (569)
55 PF09730 BicD: Microtubule-ass 98.1 0.051 1.1E-06 67.0 42.4 137 801-940 267-427 (717)
56 PF09726 Macoilin: Transmembra 98.1 0.0019 4.2E-08 79.2 30.1 73 465-537 442-514 (697)
57 PF00038 Filament: Intermediat 98.1 0.0043 9.3E-08 68.6 30.3 111 475-585 10-135 (312)
58 KOG0995 Centromere-associated 98.1 0.06 1.3E-06 64.1 39.3 69 518-586 259-327 (581)
59 PF05701 WEMBL: Weak chloropla 98.0 0.026 5.6E-07 67.6 37.2 20 466-485 215-234 (522)
60 KOG0994 Extracellular matrix g 98.0 0.078 1.7E-06 66.8 39.1 135 428-563 1166-1310(1758)
61 KOG0976 Rho/Rac1-interacting s 98.0 0.11 2.4E-06 63.5 43.1 61 476-536 85-145 (1265)
62 KOG0995 Centromere-associated 97.9 0.034 7.3E-07 66.1 33.4 80 607-686 427-506 (581)
63 KOG4643 Uncharacterized coiled 97.9 0.18 4E-06 63.2 40.6 172 465-648 173-344 (1195)
64 PF05557 MAD: Mitotic checkpoi 97.9 4.4E-06 9.5E-11 102.4 1.2 133 804-936 390-535 (722)
65 PF01576 Myosin_tail_1: Myosin 97.8 3.7E-06 7.9E-11 104.9 0.0 110 352-464 28-165 (859)
66 KOG0994 Extracellular matrix g 97.8 0.025 5.5E-07 70.9 30.8 27 677-707 1725-1751(1758)
67 PF01576 Myosin_tail_1: Myosin 97.8 5.3E-06 1.2E-10 103.5 0.0 122 801-922 604-725 (859)
68 KOG4643 Uncharacterized coiled 97.7 0.28 6E-06 61.7 43.4 54 619-672 394-447 (1195)
69 KOG0612 Rho-associated, coiled 97.7 0.16 3.4E-06 64.9 37.0 77 519-595 575-651 (1317)
70 PF15619 Lebercilin: Ciliary p 97.7 0.016 3.4E-07 61.2 24.5 161 434-597 20-187 (194)
71 PRK04778 septation ring format 97.7 0.074 1.6E-06 64.3 33.6 181 474-659 254-437 (569)
72 PF09726 Macoilin: Transmembra 97.7 0.016 3.4E-07 71.5 27.1 152 444-597 422-596 (697)
73 PF14662 CCDC155: Coiled-coil 97.6 0.041 8.9E-07 57.8 25.9 181 466-656 5-188 (193)
74 KOG0963 Transcription factor/C 97.6 0.069 1.5E-06 64.1 31.0 177 359-556 76-273 (629)
75 KOG0971 Microtubule-associated 97.6 0.37 8E-06 60.0 57.8 169 487-658 372-557 (1243)
76 COG1340 Uncharacterized archae 97.6 0.014 3E-07 64.8 23.2 8 590-597 140-147 (294)
77 PF05667 DUF812: Protein of un 97.6 0.087 1.9E-06 64.1 31.9 127 502-639 392-525 (594)
78 PF05483 SCP-1: Synaptonemal c 97.6 0.35 7.6E-06 58.8 49.8 242 408-655 82-339 (786)
79 KOG4673 Transcription factor T 97.6 0.38 8.3E-06 58.3 49.2 45 803-847 856-900 (961)
80 COG1579 Zn-ribbon protein, pos 97.6 0.006 1.3E-07 66.1 19.1 108 546-661 31-138 (239)
81 KOG0980 Actin-binding protein 97.5 0.19 4.1E-06 62.4 33.2 165 433-597 358-531 (980)
82 COG5185 HEC1 Protein involved 97.5 0.16 3.5E-06 59.2 30.8 122 422-547 274-404 (622)
83 COG1340 Uncharacterized archae 97.5 0.18 3.9E-06 56.3 30.3 64 465-528 37-100 (294)
84 PRK09039 hypothetical protein; 97.5 0.017 3.6E-07 65.8 22.9 46 552-597 115-160 (343)
85 PF06160 EzrA: Septation ring 97.5 0.48 1E-05 57.4 48.1 112 837-948 347-467 (560)
86 COG1579 Zn-ribbon protein, pos 97.5 0.023 5E-07 61.7 22.4 41 476-516 38-78 (239)
87 KOG0980 Actin-binding protein 97.5 0.42 9.2E-06 59.5 35.1 114 484-597 390-503 (980)
88 PF12718 Tropomyosin_1: Tropom 97.5 0.013 2.9E-07 58.9 19.2 121 482-603 13-136 (143)
89 KOG0612 Rho-associated, coiled 97.4 0.61 1.3E-05 59.9 36.8 62 470-531 488-549 (1317)
90 PF09730 BicD: Microtubule-ass 97.4 0.63 1.4E-05 57.8 40.3 157 485-658 22-181 (717)
91 COG5185 HEC1 Protein involved 97.4 0.44 9.5E-06 55.8 32.9 126 426-551 253-394 (622)
92 PF15619 Lebercilin: Ciliary p 97.4 0.096 2.1E-06 55.4 25.5 176 466-654 16-192 (194)
93 KOG0978 E3 ubiquitin ligase in 97.4 0.37 8E-06 59.3 33.3 124 473-596 397-532 (698)
94 TIGR03185 DNA_S_dndD DNA sulfu 97.4 0.27 5.9E-06 60.3 32.8 53 551-604 207-259 (650)
95 KOG0978 E3 ubiquitin ligase in 97.4 0.24 5.2E-06 60.9 31.5 175 487-664 434-625 (698)
96 PF14662 CCDC155: Coiled-coil 97.4 0.19 4.2E-06 52.9 26.6 36 607-642 153-188 (193)
97 PRK11281 hypothetical protein; 97.4 0.26 5.6E-06 63.9 33.2 115 465-579 124-253 (1113)
98 COG4942 Membrane-bound metallo 97.3 0.14 3.1E-06 59.5 27.9 66 467-532 43-108 (420)
99 PRK09039 hypothetical protein; 97.3 0.027 5.9E-07 64.1 21.9 105 493-597 49-153 (343)
100 COG4372 Uncharacterized protei 97.3 0.32 7E-06 55.7 29.3 137 427-565 65-205 (499)
101 COG4372 Uncharacterized protei 97.3 0.19 4.1E-06 57.5 27.2 193 468-663 73-268 (499)
102 KOG1003 Actin filament-coating 97.3 0.12 2.7E-06 54.4 23.8 122 475-596 3-124 (205)
103 PF05483 SCP-1: Synaptonemal c 97.2 0.93 2E-05 55.3 53.4 91 465-555 229-319 (786)
104 PF15070 GOLGA2L5: Putative go 97.2 0.91 2E-05 55.8 34.2 47 470-516 88-134 (617)
105 PF05010 TACC: Transforming ac 97.2 0.19 4.2E-06 53.7 25.2 93 476-568 23-119 (207)
106 KOG0243 Kinesin-like protein [ 97.2 0.25 5.4E-06 62.7 29.8 188 410-597 374-576 (1041)
107 PF13851 GAS: Growth-arrest sp 97.2 0.27 5.8E-06 52.3 26.2 104 490-597 27-130 (201)
108 TIGR01843 type_I_hlyD type I s 97.2 0.078 1.7E-06 60.3 23.7 53 479-531 126-178 (423)
109 PF12718 Tropomyosin_1: Tropom 97.2 0.032 7E-07 56.2 18.1 122 465-586 17-141 (143)
110 KOG2991 Splicing regulator [RN 97.1 0.14 3.1E-06 55.8 23.3 190 467-666 106-318 (330)
111 PF15070 GOLGA2L5: Putative go 97.1 0.52 1.1E-05 57.8 31.1 27 630-656 283-309 (617)
112 TIGR03185 DNA_S_dndD DNA sulfu 97.1 1.3 2.7E-05 54.6 37.1 80 572-652 389-468 (650)
113 PF05010 TACC: Transforming ac 97.1 0.55 1.2E-05 50.3 28.0 43 468-510 8-50 (207)
114 PF08317 Spc7: Spc7 kinetochor 97.1 0.42 9E-06 54.1 28.0 86 359-453 78-169 (325)
115 PF09755 DUF2046: Uncharacteri 97.1 0.77 1.7E-05 51.8 29.8 83 576-659 180-280 (310)
116 KOG0963 Transcription factor/C 97.0 1.5 3.2E-05 53.2 34.4 66 610-684 290-359 (629)
117 PF15066 CAGE1: Cancer-associa 97.0 0.4 8.6E-06 56.1 26.3 130 467-596 329-461 (527)
118 KOG0999 Microtubule-associated 97.0 1.4 3E-05 52.7 49.1 99 431-529 105-219 (772)
119 PF15450 DUF4631: Domain of un 96.9 1.5 3.3E-05 52.3 31.8 98 444-541 226-324 (531)
120 PF05911 DUF869: Plant protein 96.9 2.1 4.6E-05 53.8 49.8 259 408-669 10-301 (769)
121 smart00787 Spc7 Spc7 kinetocho 96.9 0.76 1.7E-05 52.0 27.8 123 465-589 135-261 (312)
122 TIGR01005 eps_transp_fam exopo 96.9 0.083 1.8E-06 65.6 22.2 9 685-693 422-430 (754)
123 TIGR00634 recN DNA repair prot 96.9 0.55 1.2E-05 56.8 28.5 24 397-420 137-160 (563)
124 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.9 0.13 2.9E-06 50.8 19.2 36 623-658 95-130 (132)
125 PF09789 DUF2353: Uncharacteri 96.8 0.67 1.4E-05 52.6 26.3 162 477-650 66-227 (319)
126 PF04849 HAP1_N: HAP1 N-termin 96.8 0.083 1.8E-06 59.2 19.0 138 429-566 163-303 (306)
127 PF08317 Spc7: Spc7 kinetochor 96.8 1.1 2.5E-05 50.6 28.3 109 457-567 127-244 (325)
128 PF05557 MAD: Mitotic checkpoi 96.7 0.0012 2.5E-08 81.5 4.5 201 465-668 353-561 (722)
129 KOG0946 ER-Golgi vesicle-tethe 96.7 1.1 2.4E-05 55.6 28.7 41 467-507 676-716 (970)
130 PF05667 DUF812: Protein of un 96.7 0.66 1.4E-05 56.7 27.2 40 558-597 431-470 (594)
131 PF10473 CENP-F_leu_zip: Leuci 96.7 0.19 4.1E-06 50.8 19.0 107 483-596 10-116 (140)
132 KOG1003 Actin filament-coating 96.7 0.91 2E-05 48.1 24.1 39 607-645 160-198 (205)
133 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.6 0.3 6.6E-06 48.4 19.7 118 469-589 3-120 (132)
134 PF05622 HOOK: HOOK protein; 96.6 0.00096 2.1E-08 82.2 2.6 17 913-929 578-594 (713)
135 COG4942 Membrane-bound metallo 96.6 1.3 2.8E-05 51.9 26.9 58 471-528 40-97 (420)
136 KOG0999 Microtubule-associated 96.6 2.7 5.8E-05 50.4 46.3 127 801-927 320-458 (772)
137 PF14915 CCDC144C: CCDC144C pr 96.6 1.9 4E-05 48.5 33.1 207 465-674 59-283 (305)
138 TIGR01843 type_I_hlyD type I s 96.6 0.37 8E-06 54.8 22.6 24 634-657 247-270 (423)
139 PF05911 DUF869: Plant protein 96.6 0.68 1.5E-05 58.0 26.1 120 494-616 593-712 (769)
140 TIGR02680 conserved hypothetic 96.5 1.6 3.4E-05 58.3 30.9 21 383-404 707-727 (1353)
141 PF09789 DUF2353: Uncharacteri 96.5 0.48 1E-05 53.7 22.6 190 494-684 13-211 (319)
142 KOG1937 Uncharacterized conser 96.5 2.5 5.5E-05 49.6 30.6 164 426-589 290-467 (521)
143 PRK10929 putative mechanosensi 96.5 3.4 7.4E-05 54.0 32.8 126 519-649 174-309 (1109)
144 PF10168 Nup88: Nuclear pore c 96.5 0.2 4.4E-06 62.2 21.4 106 483-591 565-670 (717)
145 KOG2991 Splicing regulator [RN 96.5 0.58 1.3E-05 51.2 21.9 207 440-662 108-321 (330)
146 TIGR02680 conserved hypothetic 96.5 5.8 0.00012 53.2 54.8 40 157-197 31-71 (1353)
147 TIGR03007 pepcterm_ChnLen poly 96.5 0.37 8.1E-06 56.9 22.6 25 634-658 356-380 (498)
148 KOG0962 DNA repair protein RAD 96.4 5.4 0.00012 52.4 51.8 53 801-853 790-845 (1294)
149 TIGR03007 pepcterm_ChnLen poly 96.4 0.7 1.5E-05 54.6 24.5 65 607-671 312-379 (498)
150 COG3883 Uncharacterized protei 96.4 1.3 2.8E-05 49.1 24.4 62 486-547 41-102 (265)
151 KOG0962 DNA repair protein RAD 96.4 5.9 0.00013 52.0 46.4 91 497-587 268-359 (1294)
152 TIGR01005 eps_transp_fam exopo 96.4 0.25 5.4E-06 61.5 21.1 20 443-462 186-205 (754)
153 PF13514 AAA_27: AAA domain 96.3 6.1 0.00013 51.8 35.5 61 621-683 891-954 (1111)
154 COG3883 Uncharacterized protei 96.3 0.57 1.2E-05 51.8 21.1 69 513-581 33-101 (265)
155 KOG0982 Centrosomal protein Nu 96.3 1.1 2.4E-05 52.1 23.5 52 537-588 302-353 (502)
156 PF13851 GAS: Growth-arrest sp 96.1 2.4 5.1E-05 45.2 26.1 74 524-597 92-166 (201)
157 PF06818 Fez1: Fez1; InterPro 96.1 0.9 2E-05 48.5 20.5 95 496-597 9-103 (202)
158 PF04849 HAP1_N: HAP1 N-termin 96.1 3.6 7.8E-05 46.6 28.5 103 542-654 202-304 (306)
159 PF10481 CENP-F_N: Cenp-F N-te 96.0 0.4 8.6E-06 52.9 17.9 109 434-542 19-133 (307)
160 KOG0946 ER-Golgi vesicle-tethe 96.0 2.5 5.5E-05 52.6 26.1 111 546-662 730-842 (970)
161 PF09728 Taxilin: Myosin-like 96.0 3.8 8.3E-05 46.4 30.8 27 426-452 71-97 (309)
162 TIGR03017 EpsF chain length de 96.0 1.1 2.3E-05 52.2 22.6 7 357-363 71-77 (444)
163 PF13870 DUF4201: Domain of un 95.9 2.5 5.4E-05 43.7 25.0 84 514-597 52-135 (177)
164 PF10498 IFT57: Intra-flagella 95.9 0.21 4.6E-06 57.4 15.9 116 457-580 240-355 (359)
165 PF05622 HOOK: HOOK protein; 95.9 0.0022 4.8E-08 79.0 0.0 74 434-508 275-357 (713)
166 PF09787 Golgin_A5: Golgin sub 95.7 6.8 0.00015 47.2 28.9 61 465-526 183-243 (511)
167 COG0419 SbcC ATPase involved i 95.7 9.9 0.00022 48.8 55.9 12 414-425 146-157 (908)
168 KOG4593 Mitotic checkpoint pro 95.7 8.1 0.00017 47.8 53.5 55 863-917 462-516 (716)
169 PRK10869 recombination and rep 95.6 7.8 0.00017 47.2 29.5 71 607-684 319-389 (553)
170 PF04012 PspA_IM30: PspA/IM30 95.6 4 8.6E-05 43.4 26.6 154 471-625 18-178 (221)
171 PF14915 CCDC144C: CCDC144C pr 95.6 5.4 0.00012 44.9 34.3 152 488-641 142-300 (305)
172 PLN02939 transferase, transfer 95.6 5.5 0.00012 51.3 27.6 245 390-657 128-400 (977)
173 PF13166 AAA_13: AAA domain 95.5 2.6 5.6E-05 52.0 24.6 12 891-902 615-626 (712)
174 TIGR01000 bacteriocin_acc bact 95.5 3.9 8.4E-05 48.3 24.8 26 630-655 288-313 (457)
175 PF15066 CAGE1: Cancer-associa 95.5 7.7 0.00017 46.0 26.6 110 479-588 365-474 (527)
176 TIGR00634 recN DNA repair prot 95.4 3.3 7.2E-05 50.3 24.6 12 871-882 533-544 (563)
177 PRK11281 hypothetical protein; 95.3 4.1 8.9E-05 53.3 26.1 133 465-597 69-215 (1113)
178 PF09755 DUF2046: Uncharacteri 95.3 6.7 0.00015 44.5 28.8 34 638-671 227-260 (310)
179 TIGR03017 EpsF chain length de 95.3 4.8 0.0001 46.8 24.6 24 434-457 172-195 (444)
180 PF09304 Cortex-I_coil: Cortex 95.3 1 2.2E-05 43.6 15.4 99 487-585 6-104 (107)
181 PF15397 DUF4618: Domain of un 95.3 6.3 0.00014 43.8 25.0 178 477-662 32-222 (258)
182 PRK10929 putative mechanosensi 95.2 11 0.00023 49.7 29.1 87 570-657 336-428 (1109)
183 KOG4593 Mitotic checkpoint pro 95.2 12 0.00025 46.5 51.5 50 614-663 277-329 (716)
184 KOG1850 Myosin-like coiled-coi 95.2 7.5 0.00016 44.2 31.1 67 347-416 16-84 (391)
185 KOG1899 LAR transmembrane tyro 95.1 0.97 2.1E-05 54.6 17.9 87 465-551 107-193 (861)
186 PF13166 AAA_13: AAA domain 95.1 8.5 0.00018 47.6 27.2 8 685-692 536-543 (712)
187 PF10186 Atg14: UV radiation r 95.1 3.4 7.4E-05 45.0 21.4 17 747-765 254-270 (302)
188 PF10186 Atg14: UV radiation r 95.0 2.8 6E-05 45.8 20.2 16 485-500 29-44 (302)
189 PF12325 TMF_TATA_bd: TATA ele 94.9 0.86 1.9E-05 45.0 14.3 81 480-564 20-100 (120)
190 KOG4360 Uncharacterized coiled 94.8 1.2 2.5E-05 52.9 17.3 121 435-555 161-291 (596)
191 PF04111 APG6: Autophagy prote 94.8 0.36 7.9E-06 54.5 13.1 77 520-597 11-87 (314)
192 PF04111 APG6: Autophagy prote 94.7 0.52 1.1E-05 53.3 14.2 27 430-456 6-32 (314)
193 COG4477 EzrA Negative regulato 94.7 14 0.0003 44.7 32.8 83 476-560 255-337 (570)
194 PF10481 CENP-F_N: Cenp-F N-te 94.7 1 2.2E-05 49.8 15.5 111 509-636 16-126 (307)
195 PF13870 DUF4201: Domain of un 94.7 6.3 0.00014 40.8 21.1 28 562-589 147-174 (177)
196 PF12325 TMF_TATA_bd: TATA ele 94.6 1.5 3.2E-05 43.4 15.1 95 465-563 19-113 (120)
197 PF15294 Leu_zip: Leucine zipp 94.5 10 0.00022 42.6 23.7 151 359-525 4-174 (278)
198 TIGR01000 bacteriocin_acc bact 94.5 11 0.00024 44.5 25.0 23 635-657 286-308 (457)
199 PRK10869 recombination and rep 94.5 9.9 0.00021 46.3 25.1 19 400-418 136-154 (553)
200 KOG0249 LAR-interacting protei 94.5 3.3 7.1E-05 51.1 20.4 90 472-562 94-186 (916)
201 KOG0243 Kinesin-like protein [ 94.5 22 0.00047 46.2 38.5 42 382-425 284-328 (1041)
202 KOG1937 Uncharacterized conser 94.5 14 0.0003 43.8 25.7 121 471-604 257-381 (521)
203 smart00787 Spc7 Spc7 kinetocho 94.4 12 0.00025 42.7 29.0 10 390-399 70-79 (312)
204 PF15450 DUF4631: Domain of un 94.3 16 0.00035 44.0 38.8 75 803-880 391-466 (531)
205 PRK10361 DNA recombination pro 94.1 18 0.00038 43.6 25.6 43 849-891 381-423 (475)
206 COG2433 Uncharacterized conser 94.0 1.5 3.2E-05 53.2 16.0 29 286-322 256-284 (652)
207 KOG0982 Centrosomal protein Nu 93.9 15 0.00033 43.2 23.4 174 465-650 218-391 (502)
208 PF10168 Nup88: Nuclear pore c 93.9 5.4 0.00012 50.1 21.6 48 465-512 561-608 (717)
209 KOG0249 LAR-interacting protei 93.9 4 8.7E-05 50.3 19.4 23 399-421 34-56 (916)
210 PF09728 Taxilin: Myosin-like 93.8 15 0.00032 41.8 36.2 86 559-647 208-293 (309)
211 KOG4809 Rab6 GTPase-interactin 93.7 13 0.00029 44.9 22.7 62 475-536 330-391 (654)
212 PF09738 DUF2051: Double stran 93.7 4.3 9.4E-05 46.0 18.3 66 617-683 217-290 (302)
213 PF06785 UPF0242: Uncharacteri 93.6 10 0.00022 43.4 20.6 124 540-680 86-212 (401)
214 PLN02939 transferase, transfer 93.5 32 0.00069 44.7 29.3 90 537-628 224-316 (977)
215 PF08614 ATG16: Autophagy prot 93.5 1.3 2.9E-05 46.5 13.3 66 497-562 109-174 (194)
216 PF05384 DegS: Sensor protein 93.5 6.8 0.00015 40.6 17.9 121 530-652 4-124 (159)
217 PF12795 MscS_porin: Mechanose 93.4 14 0.00029 40.2 24.6 133 465-597 27-173 (240)
218 KOG0804 Cytoplasmic Zn-finger 93.4 3.8 8.2E-05 48.3 17.5 36 618-653 413-448 (493)
219 COG3096 MukB Uncharacterized p 93.4 28 0.00061 43.6 29.4 284 365-657 751-1097(1480)
220 TIGR00618 sbcc exonuclease Sbc 93.3 36 0.00079 44.5 53.9 30 392-421 151-180 (1042)
221 KOG0993 Rab5 GTPase effector R 93.2 22 0.00047 41.8 32.4 81 571-662 104-184 (542)
222 PF06818 Fez1: Fez1; InterPro 93.1 14 0.00031 39.6 21.9 64 477-540 11-74 (202)
223 PF11559 ADIP: Afadin- and alp 93.1 3.7 8E-05 41.3 15.3 72 465-536 55-126 (151)
224 KOG1853 LIS1-interacting prote 93.1 17 0.00037 40.2 21.7 25 628-652 159-183 (333)
225 PF13514 AAA_27: AAA domain 92.8 43 0.00093 44.2 37.7 79 377-456 82-173 (1111)
226 KOG4360 Uncharacterized coiled 92.8 7.7 0.00017 46.4 19.0 141 478-653 161-302 (596)
227 PF10498 IFT57: Intra-flagella 92.7 3.8 8.2E-05 47.4 16.4 43 465-507 216-258 (359)
228 PRK10246 exonuclease subunit S 92.6 44 0.00096 43.9 38.4 25 356-380 184-208 (1047)
229 KOG1899 LAR transmembrane tyro 92.4 14 0.00029 45.4 20.5 189 435-640 106-302 (861)
230 PLN03229 acetyl-coenzyme A car 92.3 18 0.00038 45.5 22.1 24 363-386 330-353 (762)
231 PF10146 zf-C4H2: Zinc finger- 92.2 3.5 7.7E-05 44.9 14.7 57 533-589 19-75 (230)
232 KOG0239 Kinesin (KAR3 subfamil 92.1 13 0.00027 46.6 20.9 38 485-522 170-207 (670)
233 PF11932 DUF3450: Protein of u 92.1 9 0.0002 41.8 17.7 82 457-538 37-118 (251)
234 PRK10361 DNA recombination pro 91.9 31 0.00067 41.6 22.9 16 687-704 203-218 (475)
235 PF07798 DUF1640: Protein of u 91.9 9.9 0.00021 39.6 17.0 31 644-674 117-147 (177)
236 PF00769 ERM: Ezrin/radixin/mo 91.9 12 0.00027 41.0 18.5 76 515-597 9-84 (246)
237 PF00769 ERM: Ezrin/radixin/mo 91.8 10 0.00022 41.7 17.7 100 477-576 27-126 (246)
238 KOG0239 Kinesin (KAR3 subfamil 91.8 6.7 0.00015 48.9 18.1 27 685-711 407-441 (670)
239 PF10146 zf-C4H2: Zinc finger- 91.7 3.8 8.3E-05 44.7 14.2 72 848-919 32-103 (230)
240 KOG4302 Microtubule-associated 91.7 22 0.00048 44.3 22.0 96 560-662 160-269 (660)
241 PF06008 Laminin_I: Laminin Do 91.5 25 0.00054 38.7 29.0 26 523-548 144-169 (264)
242 PF06785 UPF0242: Uncharacteri 91.4 24 0.00053 40.5 20.2 62 485-546 101-162 (401)
243 COG1842 PspA Phage shock prote 91.4 10 0.00023 41.3 17.1 106 548-655 33-142 (225)
244 PF04582 Reo_sigmaC: Reovirus 91.4 0.28 6E-06 55.6 5.3 135 467-602 19-153 (326)
245 COG0497 RecN ATPase involved i 91.3 35 0.00075 41.9 22.8 71 607-684 320-390 (557)
246 PF15397 DUF4618: Domain of un 91.2 29 0.00063 38.7 28.3 51 457-507 62-112 (258)
247 PRK12704 phosphodiesterase; Pr 91.0 34 0.00073 41.7 22.5 8 685-692 254-261 (520)
248 COG2433 Uncharacterized conser 91.0 10 0.00023 46.3 17.8 63 620-684 475-539 (652)
249 PF09787 Golgin_A5: Golgin sub 90.9 44 0.00096 40.4 29.7 79 571-657 352-430 (511)
250 KOG0972 Huntingtin interacting 90.8 5.7 0.00012 44.6 14.4 131 442-580 232-362 (384)
251 PF11932 DUF3450: Protein of u 90.6 9.2 0.0002 41.7 16.0 44 554-597 43-86 (251)
252 PRK10246 exonuclease subunit S 90.6 70 0.0015 42.1 60.0 28 394-421 157-184 (1047)
253 KOG4677 Golgi integral membran 90.4 46 0.00099 39.7 24.4 120 465-597 234-353 (554)
254 KOG1853 LIS1-interacting prote 90.1 35 0.00076 37.9 21.5 37 419-455 23-67 (333)
255 PRK10698 phage shock protein P 90.0 32 0.00069 37.3 25.7 119 471-589 19-142 (222)
256 PLN03229 acetyl-coenzyme A car 89.9 33 0.00071 43.3 21.2 38 644-681 670-711 (762)
257 TIGR03319 YmdA_YtgF conserved 89.9 50 0.0011 40.2 22.6 9 457-465 57-65 (514)
258 KOG0804 Cytoplasmic Zn-finger 89.6 20 0.00042 42.6 18.0 27 207-233 168-203 (493)
259 PF06705 SF-assemblin: SF-asse 89.6 35 0.00077 37.2 30.2 30 628-657 210-239 (247)
260 KOG2129 Uncharacterized conser 89.4 52 0.0011 38.9 22.3 57 601-658 243-303 (552)
261 KOG4677 Golgi integral membran 89.4 54 0.0012 39.1 27.6 73 525-597 309-385 (554)
262 PF10211 Ax_dynein_light: Axon 89.2 12 0.00025 39.7 14.8 70 457-526 113-185 (189)
263 COG1842 PspA Phage shock prote 89.2 38 0.00082 37.0 24.0 63 467-529 15-77 (225)
264 COG4477 EzrA Negative regulato 89.2 62 0.0013 39.5 38.8 112 803-915 386-520 (570)
265 KOG4438 Centromere-associated 89.1 56 0.0012 38.8 33.3 19 402-421 106-124 (446)
266 PF13863 DUF4200: Domain of un 89.0 23 0.0005 34.3 16.3 90 464-553 13-102 (126)
267 PF14197 Cep57_CLD_2: Centroso 88.8 3.4 7.5E-05 37.1 9.0 62 863-924 6-67 (69)
268 TIGR02977 phageshock_pspA phag 88.5 23 0.00051 38.0 16.8 96 553-650 38-137 (219)
269 PF06008 Laminin_I: Laminin Do 88.4 44 0.00096 36.7 27.9 51 471-521 54-104 (264)
270 PRK00106 hypothetical protein; 88.3 72 0.0016 39.1 24.7 17 685-704 326-342 (535)
271 PF04012 PspA_IM30: PspA/IM30 88.3 39 0.00084 36.0 25.3 29 427-455 24-52 (221)
272 PF15254 CCDC14: Coiled-coil d 88.0 88 0.0019 39.7 23.5 126 510-655 426-551 (861)
273 KOG3091 Nuclear pore complex, 87.9 29 0.00064 41.7 18.2 76 476-551 348-423 (508)
274 PRK09841 cryptic autophosphory 87.8 14 0.00031 46.3 16.9 41 465-505 256-296 (726)
275 PF15290 Syntaphilin: Golgi-lo 87.7 10 0.00023 42.4 13.6 94 500-593 71-164 (305)
276 KOG4460 Nuclear pore complex, 87.7 48 0.0011 40.4 19.7 75 558-637 660-734 (741)
277 PF06705 SF-assemblin: SF-asse 87.6 47 0.001 36.2 29.1 59 539-597 92-151 (247)
278 KOG4637 Adaptor for phosphoino 87.6 28 0.00061 40.5 17.2 50 540-589 147-196 (464)
279 TIGR01010 BexC_CtrB_KpsE polys 87.4 48 0.001 37.9 19.5 32 481-512 168-199 (362)
280 PF15290 Syntaphilin: Golgi-lo 87.3 11 0.00025 42.1 13.6 131 782-923 41-171 (305)
281 PF09738 DUF2051: Double stran 87.2 14 0.0003 42.1 14.6 39 478-516 79-117 (302)
282 TIGR02977 phageshock_pspA phag 87.1 47 0.001 35.7 25.1 55 473-527 21-75 (219)
283 PF06005 DUF904: Protein of un 87.1 12 0.00025 34.1 11.4 41 500-540 7-47 (72)
284 KOG0288 WD40 repeat protein Ti 86.9 30 0.00065 40.8 17.2 46 509-554 25-70 (459)
285 KOG4302 Microtubule-associated 86.8 96 0.0021 39.0 28.0 21 616-636 237-257 (660)
286 PF12329 TMF_DNA_bd: TATA elem 86.5 5.2 0.00011 36.3 8.8 70 852-921 2-71 (74)
287 PF07111 HCR: Alpha helical co 86.4 1E+02 0.0022 38.8 50.6 170 492-662 157-367 (739)
288 PRK10698 phage shock protein P 86.1 41 0.00089 36.5 17.0 99 554-654 39-141 (222)
289 PF04912 Dynamitin: Dynamitin 85.9 77 0.0017 37.0 24.6 25 607-631 338-362 (388)
290 PF15254 CCDC14: Coiled-coil d 85.5 1.2E+02 0.0025 38.7 24.8 23 434-456 381-403 (861)
291 PF08581 Tup_N: Tup N-terminal 85.5 17 0.00036 33.7 11.6 32 822-856 2-33 (79)
292 PRK03947 prefoldin subunit alp 85.4 28 0.0006 34.6 14.3 37 482-518 5-41 (140)
293 COG5283 Phage-related tail pro 85.2 1.3E+02 0.0028 40.1 22.9 84 505-588 58-141 (1213)
294 PF09486 HrpB7: Bacterial type 85.2 51 0.0011 34.3 19.3 128 472-599 11-139 (158)
295 PF07106 TBPIP: Tat binding pr 85.2 9.9 0.00022 39.0 11.4 61 568-629 73-133 (169)
296 KOG2685 Cystoskeletal protein 85.2 72 0.0016 37.8 19.1 124 457-583 255-395 (421)
297 PRK12704 phosphodiesterase; Pr 84.6 1.1E+02 0.0023 37.5 25.1 12 457-468 63-74 (520)
298 PF06005 DUF904: Protein of un 84.6 19 0.00041 32.7 11.4 53 529-581 15-67 (72)
299 PF14992 TMCO5: TMCO5 family 84.0 55 0.0012 37.0 17.0 22 431-452 23-44 (280)
300 PF10212 TTKRSYEDQ: Predicted 84.0 26 0.00057 42.4 15.5 99 493-594 416-514 (518)
301 PF12777 MT: Microtubule-bindi 84.0 82 0.0018 36.2 19.2 88 590-684 216-306 (344)
302 PF07889 DUF1664: Protein of u 84.0 25 0.00055 35.3 13.1 87 426-516 36-122 (126)
303 PRK11519 tyrosine kinase; Prov 83.8 34 0.00074 43.0 17.3 39 467-505 258-296 (719)
304 KOG1962 B-cell receptor-associ 83.8 23 0.0005 38.5 13.6 53 530-582 156-208 (216)
305 PRK09841 cryptic autophosphory 83.8 28 0.0006 43.8 16.5 47 452-498 250-296 (726)
306 KOG0240 Kinesin (SMY1 subfamil 83.7 1.2E+02 0.0026 37.5 20.6 41 474-514 412-452 (607)
307 PRK15422 septal ring assembly 83.7 19 0.00041 33.4 11.0 35 500-534 7-41 (79)
308 cd07666 BAR_SNX7 The Bin/Amphi 83.5 78 0.0017 35.1 20.2 191 499-704 32-238 (243)
309 KOG4438 Centromere-associated 83.4 1.1E+02 0.0023 36.6 33.8 18 404-421 127-144 (446)
310 KOG0240 Kinesin (SMY1 subfamil 83.2 1.3E+02 0.0027 37.2 22.6 85 491-575 401-485 (607)
311 PF05384 DegS: Sensor protein 83.2 62 0.0013 33.7 21.3 38 493-530 30-67 (159)
312 TIGR03319 YmdA_YtgF conserved 83.1 1.2E+02 0.0026 37.0 26.0 71 447-517 58-128 (514)
313 PF06120 Phage_HK97_TLTM: Tail 83.1 93 0.002 35.6 18.8 28 564-591 78-105 (301)
314 PF15294 Leu_zip: Leucine zipp 82.9 47 0.001 37.5 16.0 46 467-512 130-175 (278)
315 PF15035 Rootletin: Ciliary ro 82.9 69 0.0015 34.0 18.4 64 534-597 69-132 (182)
316 PF10267 Tmemb_cc2: Predicted 82.8 47 0.001 39.2 16.7 77 495-587 242-318 (395)
317 PF02994 Transposase_22: L1 tr 82.8 3.6 7.8E-05 47.7 7.8 12 747-758 296-307 (370)
318 PF14073 Cep57_CLD: Centrosome 82.8 70 0.0015 34.0 18.7 37 561-597 114-150 (178)
319 PF05278 PEARLI-4: Arabidopsis 82.5 53 0.0011 36.9 16.1 132 802-939 125-263 (269)
320 PF10267 Tmemb_cc2: Predicted 82.3 44 0.00096 39.4 16.3 76 434-516 220-295 (395)
321 KOG0244 Kinesin-like protein [ 82.2 1.1E+02 0.0023 39.7 20.2 118 536-674 471-588 (913)
322 PF04582 Reo_sigmaC: Reovirus 82.0 2.6 5.7E-05 48.0 6.1 119 479-597 38-156 (326)
323 COG4026 Uncharacterized protei 82.0 13 0.00027 40.6 10.7 70 482-551 141-210 (290)
324 KOG4809 Rab6 GTPase-interactin 81.9 1.4E+02 0.003 36.8 25.8 124 466-589 328-457 (654)
325 KOG0288 WD40 repeat protein Ti 81.7 59 0.0013 38.5 16.6 93 431-523 4-102 (459)
326 TIGR02338 gimC_beta prefoldin, 81.6 29 0.00062 33.5 12.2 33 559-591 9-41 (110)
327 KOG4657 Uncharacterized conser 81.6 78 0.0017 34.8 16.4 75 491-565 52-126 (246)
328 PF07200 Mod_r: Modifier of ru 81.5 62 0.0013 32.5 18.4 112 484-597 8-119 (150)
329 PF08647 BRE1: BRE1 E3 ubiquit 81.5 27 0.00059 33.1 11.8 43 554-596 18-60 (96)
330 COG4913 Uncharacterized protei 81.2 1.7E+02 0.0036 37.3 23.7 223 459-692 601-853 (1104)
331 PF04949 Transcrip_act: Transc 81.0 73 0.0016 33.0 16.9 76 557-642 81-157 (159)
332 KOG2751 Beclin-like protein [S 81.0 58 0.0013 38.7 16.4 28 429-456 139-166 (447)
333 PF14992 TMCO5: TMCO5 family 81.0 52 0.0011 37.2 15.4 127 457-597 13-139 (280)
334 PF07889 DUF1664: Protein of u 80.9 46 0.00099 33.5 13.6 14 498-511 44-57 (126)
335 PF07106 TBPIP: Tat binding pr 80.9 20 0.00043 36.8 11.6 63 470-532 73-137 (169)
336 PRK11519 tyrosine kinase; Prov 80.8 51 0.0011 41.5 17.3 47 452-498 250-296 (719)
337 PF14073 Cep57_CLD: Centrosome 80.6 83 0.0018 33.4 19.8 103 559-661 63-169 (178)
338 PF05335 DUF745: Protein of un 80.6 86 0.0019 33.5 22.8 141 439-580 30-171 (188)
339 TIGR01010 BexC_CtrB_KpsE polys 80.5 52 0.0011 37.7 16.0 27 479-505 173-199 (362)
340 PF08826 DMPK_coil: DMPK coile 80.4 20 0.00042 31.8 9.6 53 455-508 5-57 (61)
341 PF10234 Cluap1: Clusterin-ass 80.4 1.1E+02 0.0023 34.5 19.0 22 370-396 64-85 (267)
342 PF03962 Mnd1: Mnd1 family; I 80.3 55 0.0012 34.7 14.8 17 532-548 110-126 (188)
343 KOG3850 Predicted membrane pro 80.3 1.3E+02 0.0028 35.5 27.1 103 801-909 262-365 (455)
344 PF05266 DUF724: Protein of un 80.2 50 0.0011 35.2 14.5 24 574-597 159-182 (190)
345 PRK15422 septal ring assembly 80.0 18 0.0004 33.5 9.6 70 852-921 8-77 (79)
346 KOG4787 Uncharacterized conser 80.0 1.6E+02 0.0035 36.4 29.6 51 874-924 769-819 (852)
347 KOG2751 Beclin-like protein [S 79.8 54 0.0012 38.9 15.6 91 499-589 178-268 (447)
348 PF02994 Transposase_22: L1 tr 79.8 4.2 9.2E-05 47.1 7.0 46 544-589 142-187 (370)
349 PF03962 Mnd1: Mnd1 family; I 79.7 56 0.0012 34.7 14.7 18 537-554 108-125 (188)
350 COG3206 GumC Uncharacterized p 79.5 1.4E+02 0.0031 35.4 26.0 20 434-453 196-215 (458)
351 PRK03947 prefoldin subunit alp 79.5 64 0.0014 32.1 14.3 33 559-591 100-132 (140)
352 PF12329 TMF_DNA_bd: TATA elem 79.3 22 0.00048 32.3 9.9 50 467-516 3-52 (74)
353 cd00632 Prefoldin_beta Prefold 79.0 34 0.00073 32.6 11.7 31 559-589 5-35 (105)
354 PF10234 Cluap1: Clusterin-ass 78.9 1.2E+02 0.0026 34.2 19.5 90 503-592 168-257 (267)
355 PF13863 DUF4200: Domain of un 78.8 65 0.0014 31.2 17.4 41 557-597 64-104 (126)
356 PF02050 FliJ: Flagellar FliJ 78.6 55 0.0012 30.2 14.7 61 869-929 45-105 (123)
357 PF02403 Seryl_tRNA_N: Seryl-t 78.1 20 0.00043 34.0 9.9 36 482-517 28-63 (108)
358 COG3074 Uncharacterized protei 78.0 40 0.00086 30.8 10.8 31 547-577 40-70 (79)
359 PF05546 She9_MDM33: She9 / Md 77.9 73 0.0016 34.6 14.8 51 532-582 32-82 (207)
360 TIGR02231 conserved hypothetic 77.7 24 0.00052 42.5 12.7 34 483-516 71-104 (525)
361 PF08172 CASP_C: CASP C termin 77.3 12 0.00026 41.3 9.2 51 546-596 79-129 (248)
362 KOG0972 Huntingtin interacting 76.9 1.2E+02 0.0027 34.5 16.6 101 465-568 223-323 (384)
363 PF04100 Vps53_N: Vps53-like, 76.6 1.6E+02 0.0035 34.5 18.7 105 542-649 60-173 (383)
364 PF06120 Phage_HK97_TLTM: Tail 76.5 1.5E+02 0.0032 34.0 18.4 31 559-589 80-110 (301)
365 PRK00106 hypothetical protein; 76.4 2E+02 0.0043 35.5 25.1 18 675-692 245-276 (535)
366 PF12777 MT: Microtubule-bindi 76.1 12 0.00027 42.7 9.3 74 516-589 219-292 (344)
367 PRK09343 prefoldin subunit bet 75.6 67 0.0014 31.7 13.0 20 570-589 24-43 (121)
368 PF04912 Dynamitin: Dynamitin 75.2 1.7E+02 0.0037 34.1 19.3 14 286-299 38-51 (388)
369 PF07798 DUF1640: Protein of u 75.2 1.1E+02 0.0024 31.9 19.4 21 628-648 133-153 (177)
370 PF05700 BCAS2: Breast carcino 74.9 1.3E+02 0.0028 32.6 16.6 13 465-477 132-144 (221)
371 KOG2264 Exostosin EXT1L [Signa 74.5 20 0.00043 43.6 10.4 31 495-525 91-121 (907)
372 COG1382 GimC Prefoldin, chaper 73.7 83 0.0018 31.5 12.9 23 810-832 10-32 (119)
373 PF05615 THOC7: Tho complex su 73.7 82 0.0018 31.4 13.3 79 487-566 43-121 (139)
374 KOG2196 Nuclear porin [Nuclear 73.6 1.6E+02 0.0034 32.9 19.5 106 465-582 102-207 (254)
375 TIGR00618 sbcc exonuclease Sbc 73.2 3.1E+02 0.0068 36.2 39.2 23 358-380 182-204 (1042)
376 PRK09343 prefoldin subunit bet 72.8 64 0.0014 31.8 12.1 30 559-588 20-49 (121)
377 PF10211 Ax_dynein_light: Axon 72.7 1.1E+02 0.0024 32.5 14.6 19 638-656 168-186 (189)
378 PF05335 DUF745: Protein of un 72.7 1.4E+02 0.003 32.0 20.9 50 407-456 33-90 (188)
379 PF02403 Seryl_tRNA_N: Seryl-t 72.4 21 0.00046 33.8 8.4 68 876-943 36-106 (108)
380 TIGR02231 conserved hypothetic 71.9 49 0.0011 39.9 13.3 45 607-651 126-170 (525)
381 PRK02119 hypothetical protein; 70.8 28 0.00061 31.6 8.4 52 499-550 4-55 (73)
382 PRK00409 recombination and DNA 70.7 1.6E+02 0.0035 37.7 17.9 13 753-765 751-763 (782)
383 smart00502 BBC B-Box C-termina 70.7 94 0.002 29.1 16.8 51 628-681 74-124 (127)
384 KOG0163 Myosin class VI heavy 70.6 3.2E+02 0.0068 35.1 20.1 166 491-658 841-1006(1259)
385 TIGR03752 conj_TIGR03752 integ 70.3 48 0.001 39.9 12.3 47 470-516 60-106 (472)
386 COG3074 Uncharacterized protei 70.0 48 0.001 30.2 9.3 65 853-917 9-73 (79)
387 PF09403 FadA: Adhesion protei 70.0 1.2E+02 0.0025 30.7 13.1 103 485-588 15-121 (126)
388 PF07851 TMPIT: TMPIT-like pro 70.0 42 0.00091 38.7 11.4 59 539-597 4-62 (330)
389 PF08826 DMPK_coil: DMPK coile 69.8 63 0.0014 28.7 9.9 45 550-594 15-59 (61)
390 PF05546 She9_MDM33: She9 / Md 69.3 1.6E+02 0.0035 32.1 14.8 73 491-568 10-82 (207)
391 PF10212 TTKRSYEDQ: Predicted 69.2 2.8E+02 0.0061 34.0 24.6 23 434-456 296-318 (518)
392 KOG1103 Predicted coiled-coil 69.1 2.3E+02 0.005 33.1 25.5 46 607-652 247-292 (561)
393 PRK00409 recombination and DNA 69.0 1.4E+02 0.0029 38.4 16.8 13 235-247 218-230 (782)
394 PF05278 PEARLI-4: Arabidopsis 68.9 1.6E+02 0.0035 33.3 15.3 56 523-585 205-260 (269)
395 COG5283 Phage-related tail pro 68.9 4.1E+02 0.0088 35.8 22.2 115 488-603 27-141 (1213)
396 PF06637 PV-1: PV-1 protein (P 68.8 2.5E+02 0.0054 33.3 28.1 123 525-656 263-386 (442)
397 KOG1850 Myosin-like coiled-coi 68.8 2.3E+02 0.005 32.8 35.9 30 392-421 20-49 (391)
398 TIGR02338 gimC_beta prefoldin, 68.3 71 0.0015 30.8 11.1 29 559-587 16-44 (110)
399 PF00901 Orbi_VP5: Orbivirus o 68.1 2.9E+02 0.0062 33.7 17.9 65 533-597 141-206 (508)
400 COG1382 GimC Prefoldin, chaper 67.7 94 0.002 31.1 11.8 23 613-635 78-100 (119)
401 PF02050 FliJ: Flagellar FliJ 67.7 1E+02 0.0022 28.4 17.3 21 477-497 13-33 (123)
402 PF04201 TPD52: Tumour protein 67.7 11 0.00024 39.2 5.7 56 627-682 30-86 (162)
403 PF12761 End3: Actin cytoskele 67.4 21 0.00045 38.3 7.8 25 477-501 97-121 (195)
404 KOG2264 Exostosin EXT1L [Signa 67.3 36 0.00079 41.5 10.4 56 482-544 92-147 (907)
405 PTZ00464 SNF-7-like protein; P 67.1 1.9E+02 0.0042 31.4 20.8 29 479-507 21-49 (211)
406 PF15233 SYCE1: Synaptonemal c 66.8 1.5E+02 0.0033 30.1 17.0 46 465-510 9-54 (134)
407 PF11570 E2R135: Coiled-coil r 66.6 1.5E+02 0.0032 30.2 12.8 94 470-563 16-122 (136)
408 PF10205 KLRAQ: Predicted coil 66.5 79 0.0017 30.8 10.7 67 524-597 4-70 (102)
409 COG3352 FlaC Putative archaeal 66.2 63 0.0014 33.5 10.6 90 475-564 43-133 (157)
410 cd00632 Prefoldin_beta Prefold 66.1 1.2E+02 0.0027 28.8 12.7 31 486-516 9-39 (105)
411 PF14712 Snapin_Pallidin: Snap 66.1 1.1E+02 0.0024 28.2 11.9 19 555-573 66-84 (92)
412 PRK04406 hypothetical protein; 66.0 43 0.00092 30.7 8.5 48 502-549 9-56 (75)
413 PF15035 Rootletin: Ciliary ro 65.9 1.9E+02 0.0041 30.8 19.0 15 477-491 24-38 (182)
414 PTZ00440 reticulocyte binding 65.6 6.5E+02 0.014 36.9 39.7 15 404-418 635-649 (2722)
415 TIGR03794 NHPM_micro_HlyD NHPM 65.6 2.7E+02 0.0059 32.6 20.1 24 633-656 227-250 (421)
416 PF12761 End3: Actin cytoskele 65.5 36 0.00079 36.5 9.2 66 465-537 128-193 (195)
417 COG0497 RecN ATPase involved i 65.0 3.5E+02 0.0076 33.6 24.9 15 402-416 137-151 (557)
418 TIGR03752 conj_TIGR03752 integ 64.9 53 0.0012 39.5 11.3 29 630-658 113-141 (472)
419 KOG4687 Uncharacterized coiled 64.6 2.5E+02 0.0055 31.9 16.2 141 532-677 9-153 (389)
420 PF05700 BCAS2: Breast carcino 64.6 2.1E+02 0.0046 31.0 16.6 25 465-489 100-124 (221)
421 TIGR02971 heterocyst_DevB ABC 64.6 2.4E+02 0.0052 31.6 20.1 8 685-692 207-214 (327)
422 smart00806 AIP3 Actin interact 64.3 3.2E+02 0.0069 32.9 17.8 87 610-705 215-314 (426)
423 PF04871 Uso1_p115_C: Uso1 / p 64.3 1.7E+02 0.0036 29.7 14.5 34 570-604 80-113 (136)
424 PF07058 Myosin_HC-like: Myosi 64.1 2.7E+02 0.006 32.1 19.8 97 485-592 2-98 (351)
425 KOG2129 Uncharacterized conser 63.0 3.3E+02 0.0072 32.6 24.6 34 465-498 161-194 (552)
426 PF04102 SlyX: SlyX; InterPro 62.8 37 0.00081 30.3 7.4 46 504-549 4-49 (69)
427 PF14362 DUF4407: Domain of un 62.6 2.6E+02 0.0056 31.3 17.5 70 564-633 132-210 (301)
428 KOG4010 Coiled-coil protein TP 62.4 28 0.00062 37.0 7.5 77 626-714 44-121 (208)
429 PRK02793 phi X174 lysis protei 62.2 46 0.001 30.2 7.9 49 502-550 6-54 (72)
430 COG3352 FlaC Putative archaeal 61.6 92 0.002 32.4 10.7 85 842-926 45-130 (157)
431 PF08172 CASP_C: CASP C termin 61.6 62 0.0014 35.9 10.5 58 880-937 76-133 (248)
432 TIGR01069 mutS2 MutS2 family p 61.5 2.3E+02 0.0049 36.5 16.7 33 741-777 729-762 (771)
433 PF13747 DUF4164: Domain of un 61.5 1.5E+02 0.0032 28.1 11.9 75 438-512 6-82 (89)
434 PF04102 SlyX: SlyX; InterPro 61.4 44 0.00095 29.9 7.6 52 610-661 2-53 (69)
435 TIGR01069 mutS2 MutS2 family p 61.4 2.4E+02 0.0051 36.3 16.8 15 234-248 212-226 (771)
436 PF04871 Uso1_p115_C: Uso1 / p 61.1 1.9E+02 0.0042 29.3 15.4 27 559-585 83-109 (136)
437 PF06419 COG6: Conserved oligo 61.0 4E+02 0.0088 33.3 18.4 206 457-690 26-231 (618)
438 COG1730 GIM5 Predicted prefold 60.6 2.1E+02 0.0045 29.5 13.4 47 610-656 92-138 (145)
439 TIGR02894 DNA_bind_RsfA transc 60.4 1.8E+02 0.004 30.5 12.8 53 528-580 100-152 (161)
440 TIGR02449 conserved hypothetic 60.1 82 0.0018 28.4 8.9 57 515-571 4-60 (65)
441 PF13949 ALIX_LYPXL_bnd: ALIX 59.8 2.7E+02 0.0059 30.6 26.2 233 466-704 13-286 (296)
442 PF01920 Prefoldin_2: Prefoldi 59.8 1.5E+02 0.0032 27.5 11.6 34 560-593 5-38 (106)
443 PF14817 HAUS5: HAUS augmin-li 59.8 77 0.0017 39.7 11.9 89 863-951 87-175 (632)
444 PF04949 Transcrip_act: Transc 59.7 2.2E+02 0.0049 29.6 16.3 51 547-597 85-135 (159)
445 PF09325 Vps5: Vps5 C terminal 59.6 2.4E+02 0.0052 29.9 20.5 173 504-683 24-210 (236)
446 PRK00736 hypothetical protein; 59.5 54 0.0012 29.4 7.8 48 503-550 4-51 (68)
447 PF11172 DUF2959: Protein of u 59.4 2.6E+02 0.0057 30.3 15.0 74 530-604 26-111 (201)
448 PRK02119 hypothetical protein; 58.5 61 0.0013 29.5 8.1 51 610-660 7-57 (73)
449 PF09766 FimP: Fms-interacting 57.9 2.9E+02 0.0063 32.2 15.5 39 541-579 14-52 (355)
450 PRK00295 hypothetical protein; 57.9 69 0.0015 28.7 8.2 48 503-550 4-51 (68)
451 PF14739 DUF4472: Domain of un 57.9 2E+02 0.0043 28.4 12.0 57 538-597 9-65 (108)
452 KOG0998 Synaptic vesicle prote 57.9 19 0.00041 46.2 6.5 17 264-280 246-262 (847)
453 KOG3647 Predicted coiled-coil 57.7 3.3E+02 0.0072 30.9 16.4 39 528-566 122-160 (338)
454 PF09731 Mitofilin: Mitochondr 57.6 4.4E+02 0.0095 32.3 23.1 23 467-489 249-271 (582)
455 PF05377 FlaC_arch: Flagella a 57.5 52 0.0011 28.7 7.0 47 505-551 1-47 (55)
456 PRK14011 prefoldin subunit alp 56.9 2.4E+02 0.0052 29.0 13.7 32 608-639 91-122 (144)
457 PF07989 Microtub_assoc: Micro 56.8 1.2E+02 0.0026 27.9 9.7 28 570-597 3-30 (75)
458 PF11570 E2R135: Coiled-coil r 56.6 2.3E+02 0.0051 28.8 13.0 41 805-845 14-54 (136)
459 COG4717 Uncharacterized conser 56.6 5.8E+02 0.013 33.4 27.9 209 426-641 617-854 (984)
460 PF08702 Fib_alpha: Fibrinogen 56.4 2.4E+02 0.0052 28.9 17.1 21 574-594 104-124 (146)
461 PRK10803 tol-pal system protei 56.0 68 0.0015 35.6 9.7 60 497-556 40-99 (263)
462 cd00890 Prefoldin Prefoldin is 55.8 1.6E+02 0.0034 28.4 11.1 89 555-645 1-127 (129)
463 KOG0247 Kinesin-like protein [ 55.7 2.6E+02 0.0057 35.6 15.1 74 467-542 525-598 (809)
464 PF10205 KLRAQ: Predicted coil 55.7 1.3E+02 0.0027 29.5 10.0 69 439-510 4-74 (102)
465 PF05791 Bacillus_HBL: Bacillu 55.5 2.7E+02 0.0059 29.3 16.7 26 572-597 108-133 (184)
466 PRK10476 multidrug resistance 55.3 3.6E+02 0.0078 30.6 16.7 8 685-692 211-218 (346)
467 KOG4603 TBP-1 interacting prot 55.2 2.9E+02 0.0063 29.5 14.7 70 477-558 80-149 (201)
468 PF01496 V_ATPase_I: V-type AT 55.2 17 0.00038 45.8 5.6 26 628-653 231-256 (759)
469 PF06657 Cep57_MT_bd: Centroso 55.0 63 0.0014 29.9 7.7 59 881-939 15-78 (79)
470 PRK04325 hypothetical protein; 55.0 70 0.0015 29.2 7.9 53 608-660 5-57 (74)
471 PRK04325 hypothetical protein; 54.8 80 0.0017 28.8 8.3 46 503-548 8-53 (74)
472 PF07851 TMPIT: TMPIT-like pro 54.6 1.3E+02 0.0028 34.9 11.7 53 545-597 3-55 (330)
473 KOG3215 Uncharacterized conser 54.6 3.2E+02 0.007 29.9 19.6 96 545-641 81-179 (222)
474 PF06632 XRCC4: DNA double-str 54.4 3.3E+02 0.0072 31.8 15.1 27 557-583 184-210 (342)
475 PRK04406 hypothetical protein; 54.1 80 0.0017 29.0 8.1 50 611-660 10-59 (75)
476 KOG0247 Kinesin-like protein [ 53.8 2.2E+02 0.0047 36.3 14.0 55 541-597 536-590 (809)
477 PF05377 FlaC_arch: Flagella a 53.7 55 0.0012 28.6 6.6 51 484-534 1-51 (55)
478 smart00502 BBC B-Box C-termina 53.6 1.9E+02 0.0042 27.0 15.3 98 491-588 1-100 (127)
479 PRK00846 hypothetical protein; 53.3 74 0.0016 29.5 7.8 53 608-660 9-61 (77)
480 cd07666 BAR_SNX7 The Bin/Amphi 52.5 3.7E+02 0.0081 29.9 24.1 169 459-628 58-241 (243)
481 KOG4005 Transcription factor X 52.4 2.8E+02 0.0061 30.9 13.1 100 479-578 55-157 (292)
482 KOG4460 Nuclear pore complex, 52.3 5.6E+02 0.012 31.9 19.4 172 438-614 564-739 (741)
483 TIGR00293 prefoldin, archaeal 51.8 1.2E+02 0.0027 29.4 9.8 96 555-658 1-125 (126)
484 PHA02607 wac fibritin; Provisi 51.2 5.3E+02 0.011 31.3 16.4 170 473-649 49-255 (454)
485 PF06156 DUF972: Protein of un 51.2 76 0.0016 31.0 8.0 56 870-925 2-57 (107)
486 KOG4787 Uncharacterized conser 50.9 6E+02 0.013 31.9 16.7 157 439-596 436-599 (852)
487 PF13874 Nup54: Nucleoporin co 50.8 1.1E+02 0.0023 31.0 9.3 92 466-557 34-125 (141)
488 PF13094 CENP-Q: CENP-Q, a CEN 50.8 2.9E+02 0.0063 28.2 12.7 118 520-639 22-160 (160)
489 KOG3215 Uncharacterized conser 50.7 3.7E+02 0.0081 29.4 15.3 159 500-671 29-188 (222)
490 PF06632 XRCC4: DNA double-str 50.6 2E+02 0.0044 33.5 12.6 103 792-894 116-219 (342)
491 PRK02793 phi X174 lysis protei 50.6 93 0.002 28.2 8.0 55 608-662 4-58 (72)
492 PRK00295 hypothetical protein; 50.6 81 0.0018 28.3 7.5 56 610-665 3-58 (68)
493 PF10805 DUF2730: Protein of u 50.6 1.4E+02 0.003 28.9 9.7 74 567-648 28-101 (106)
494 cd07623 BAR_SNX1_2 The Bin/Amp 50.5 3.6E+02 0.0078 29.2 17.0 173 509-683 3-196 (224)
495 PF04728 LPP: Lipoprotein leuc 50.4 1.6E+02 0.0035 25.9 8.9 55 509-563 1-55 (56)
496 PRK10636 putative ABC transpor 50.2 85 0.0018 39.0 10.2 74 481-554 554-634 (638)
497 PRK10476 multidrug resistance 50.2 4.3E+02 0.0093 30.0 17.3 124 466-589 83-209 (346)
498 TIGR03545 conserved hypothetic 50.1 1.4E+02 0.003 36.9 11.8 93 451-543 164-258 (555)
499 PRK00846 hypothetical protein; 50.1 1.2E+02 0.0026 28.2 8.6 61 492-552 1-61 (77)
500 PF03915 AIP3: Actin interacti 49.9 5.4E+02 0.012 31.0 17.4 154 478-633 164-320 (424)
No 1
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.93 E-value=2.3e-21 Score=233.23 Aligned_cols=516 Identities=16% Similarity=0.202 Sum_probs=353.1
Q ss_pred cChHHHHHHHHHHhhhhHHHHHH-hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHH
Q 002131 401 ILTEEKMSLALEVSGLLQSRIVE-RA-SAKEELRMVKADLESRTRRLEREKVELQSGLE--KELDRRSSDWSFKLEKYQM 476 (961)
Q Consensus 401 ~~~edRR~i~EEaaGi~Kyk~ae-rk-~t~enL~Ri~~ELe~QLepLEkQaekAK~yLE--KEL~rrqnE~~~kI~~~Es 476 (961)
..|.+...+|-+|.-+-.-+-.. .. .+.++...++...+..+.+|+++...++.-+. ..++. +...+..+..
T Consensus 194 ~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~----~~~~l~~Lk~ 269 (1074)
T KOG0250|consen 194 SNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLED----LKENLEQLKA 269 (1074)
T ss_pred CChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 45777777777766554333211 11 33344444777777777777777777666551 11111 1111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 477 EEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLY 556 (961)
Q Consensus 477 Ekk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld 556 (961)
+ +.=-.|-.-..+...+..++-..+++...+..+++.....+..+...+.++++.+..+..++....++++.+++.++
T Consensus 270 k--~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~ 347 (1074)
T KOG0250|consen 270 K--MAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLD 347 (1074)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 1 11112222223333333444445555555555666666666666667777777778888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 557 CIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIE 636 (961)
Q Consensus 557 ~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELE 636 (961)
..++++.+++.++...++.|..++..+..++++|..++.++-..+++. ..+.+..++.+..+++.++.....|+.+++
T Consensus 348 ~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~--~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 348 DLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSE--LEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986777766 666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHHHHHHHHHHhc---cccCCCCChHHHHHHHHHHh-ccccccc-
Q 002131 637 SYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKELWTRICCLQNQ---GISMLNESTQLCSQLLEFIK-GKAGQLS- 711 (961)
Q Consensus 637 sle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q---~lS~~d~n~~lm~KLL~~IK-~k~~~~~- 711 (961)
.+...+....++...+...+..+.... +-....|.+|..- +++.||++ |+.||++|. ++++|+.
T Consensus 426 ~~~~~~~~~~ee~~~i~~~i~~l~k~i--------~~~~~~l~~lk~~k~dkvs~FG~~---m~~lL~~I~r~~~~f~~~ 494 (1074)
T KOG0250|consen 426 EVKEKAKEEEEEKEHIEGEILQLRKKI--------ENISEELKDLKKTKTDKVSAFGPN---MPQLLRAIERRKRRFQTP 494 (1074)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcccchhhhcchh---hHHHHHHHHHHHhcCCCC
Confidence 666666666666655554443332221 1114444444333 99999999 999999999 5667654
Q ss_pred ---------cccccc-----h-hcccCCccceEEE----------------Ee--------cccccc--cccchhhhcc-
Q 002131 712 ---------ETKQGI-----E-FIKNGLDGQFIIE----------------SD--------MKVQGF--KRKIESLITS- 749 (961)
Q Consensus 712 ---------sVK~~~-----q-~ig~tLds~FVV~----------------~~--------iK~q~f--~~Gka~l~~s- 749 (961)
||+.+- + +||+.|+| |||+ |+ -++.+| ..|-. .+.
T Consensus 495 P~GPlG~~Vtl~~~KWa~aIE~~L~n~lna-Fiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~--p~~~ 571 (1074)
T KOG0250|consen 495 PKGPLGKYVTLKEPKWALAIERCLGNLLNA-FIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRN--PGYE 571 (1074)
T ss_pred CCCCccceeEecCcHHHHHHHHHHHHhhhh-heeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccccccccC--CCCC
Confidence 777765 6 99999999 9998 11 166666 66666 555
Q ss_pred HHHHH---------------------------------HHhcc---cCcccc-cccccccccc-cCCccccccccchhhh
Q 002131 750 LQTMS---------------------------------ALLHE---KSSLVA-SKSQSLHEDV-NLSGKLNDQTAGEIMR 791 (961)
Q Consensus 750 l~TIl---------------------------------slL~~---k~NV~~-~~~~SG~~~s-gglD~v~Y~~~~d~lr 791 (961)
||||+ .+|.. |.||.. +.-+ |+++- ||.....|.+-....+
T Consensus 572 ~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytld-g~~~~~~g~~~~~ySt~~~~~r 650 (1074)
T KOG0250|consen 572 FPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLD-GRQIFAGGPNYRVYSTRGTRAR 650 (1074)
T ss_pred CCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccC-ccccccCCCCcceeccCCCCCC
Confidence 89998 56663 777776 2211 22222 3332222411134444
Q ss_pred --ccchhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhh--------hhh
Q 002131 792 --SELKAETLL-TSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQM--------LKK 860 (961)
Q Consensus 792 --~klkses~~-~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~--------~K~ 860 (961)
..+..+.+. +.+|+..+..++.++..++.++..+..-.+.+++.++.+...+..++.+++.+...| .+.
T Consensus 651 ~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~ 730 (1074)
T KOG0250|consen 651 RPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQ 730 (1074)
T ss_pred CccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 333444444 888888888888888888877777777778888888888888888885444444333 333
Q ss_pred hh--hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHHhh
Q 002131 861 DE--SINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITILK 938 (961)
Q Consensus 861 ~D--~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil~ 938 (961)
.| .|+.+..++....++|+.+++.+..+.+++..+..+.+++.+.+......++..-.++.+|++++..++..+....
T Consensus 731 ~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e 810 (1074)
T KOG0250|consen 731 VDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAE 810 (1074)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Confidence 44 8999999999999999999999999999999999999999999999999999999999999999998888776643
Q ss_pred h
Q 002131 939 D 939 (961)
Q Consensus 939 D 939 (961)
|
T Consensus 811 ~ 811 (1074)
T KOG0250|consen 811 D 811 (1074)
T ss_pred h
Confidence 3
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.92 E-value=5.2e-20 Score=232.34 Aligned_cols=185 Identities=23% Similarity=0.297 Sum_probs=119.3
Q ss_pred HHHHHHhcChHHHHHHHHHHhhhhHHHH----HHhh--hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Q 002131 394 AMIQTIRILTEEKMSLALEVSGLLQSRI----VERA--SAKEELRM---VKADLESRTRRLEREKVELQSGL--EKELDR 462 (961)
Q Consensus 394 ~~~~~i~~~~edRR~i~EEaaGi~Kyk~----aerk--~t~enL~R---i~~ELe~QLepLEkQaekAK~yL--EKEL~r 462 (961)
.+-..|..+|++||.||||||||++|+- |+++ .|.+||.| ++.||+.++++|+.++++|..|+ ..++..
T Consensus 145 ~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~ 224 (1163)
T COG1196 145 KVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRE 224 (1163)
T ss_pred cHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999999999998 7777 89999999 99999999999999999999999 777777
Q ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 463 RS-SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNL 541 (961)
Q Consensus 463 rq-nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqel 541 (961)
.+ .-+..++..+..+...+.+.+..+.+....++.++......+..+..++..++..+..+...+-.+...+..++..+
T Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~ 304 (1163)
T COG1196 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEI 304 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 33344444444555555555555555555555555555555555555555555555544444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 542 SELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITR 578 (961)
Q Consensus 542 eEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~ 578 (961)
..+..+.......+..+......++..+......|..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1163)
T COG1196 305 SLLRERLEELENELEELEERLEELKEKIEALKEELEE 341 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.86 E-value=2.4e-16 Score=197.08 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=47.2
Q ss_pred HHHHHhcChHHHHHHHHHHhhhhHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 395 MIQTIRILTEEKMSLALEVSGLLQSRIVERASAKEELRM---VKADLESRTRRLEREKVELQSGL 456 (961)
Q Consensus 395 ~~~~i~~~~edRR~i~EEaaGi~Kyk~aerk~t~enL~R---i~~ELe~QLepLEkQaekAK~yL 456 (961)
+-+.+...|.+||.||++++|+.+|+. ....|.++|.| ++.++..++.+|+.++..++.|.
T Consensus 144 ~~~~~~~~~~~r~~~~~~~~g~~~~~~-~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~ 207 (1164)
T TIGR02169 144 VTDFISMSPVERRKIIDEIAGVAEFDR-KKEKALEELEEVEENIERLDLIIDEKRQQLERLRRER 207 (1164)
T ss_pred HHHHHCCCHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999999953 22267777777 77777777777777777777776
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.79 E-value=9.4e-14 Score=173.34 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=53.7
Q ss_pred HHHHhcChHHHHHHHHHHhhhhHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 396 IQTIRILTEEKMSLALEVSGLLQSRIVERASAKEELRM---VKADLESRTRRLEREKVELQSGL 456 (961)
Q Consensus 396 ~~~i~~~~edRR~i~EEaaGi~Kyk~aerk~t~enL~R---i~~ELe~QLepLEkQaekAK~yL 456 (961)
-..+...|.+|+.+|++++|+..|+. .+..|.+||.| ++.|+..++.+|+.++++|+.|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~ 209 (1179)
T TIGR02168 147 SEIIEAKPEERRAIFEEAAGISKYKE-RRKETERKLERTRENLDRLEDILNELERQLKSLERQA 209 (1179)
T ss_pred HHHHcCCHHHHHHHHHHHccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567799999999999999998875 33499999999 99999999999999999999998
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.56 E-value=1.3e-09 Score=134.76 Aligned_cols=252 Identities=17% Similarity=0.209 Sum_probs=124.8
Q ss_pred HHHHHHhcChHHHHHHHHHHhhhhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh---hhH
Q 002131 394 AMIQTIRILTEEKMSLALEVSGLLQSRIVERA--SAKEELRMVKADLESRTRRLEREKVELQS-GLEKELDRRS---SDW 467 (961)
Q Consensus 394 ~~~~~i~~~~edRR~i~EEaaGi~Kyk~aerk--~t~enL~Ri~~ELe~QLepLEkQaekAK~-yLEKEL~rrq---nE~ 467 (961)
.+-..|...|.+|+.||.++.|+-+|.-...+ .++.-+.+++..+..++..++.+++.... .++..|...+ .++
T Consensus 139 e~~~~l~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el 218 (880)
T PRK02224 139 EVNKLINATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAEL 218 (880)
T ss_pred ChHHHHcCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778999999999999999766553222 55666777888888888888887776422 2244444444 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 468 SFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEK 547 (961)
Q Consensus 468 ~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee 547 (961)
...+...+..+..+..++..+......+... ...+..+...+..+..++..++..++.+..++..+...+.++..+
T Consensus 219 ~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~----~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e 294 (880)
T PRK02224 219 DEEIERYEEQREQARETRDEADEVLEEHEER----REELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE 294 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443332222211 122333333333444444444444444444444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HhhhcchhhhhhHHHHHHHHHHH
Q 002131 548 FRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFS------DQIEKKPALDKYDKHVALLQREQ 621 (961)
Q Consensus 548 ~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~------eEleke~~vee~ek~Ie~lq~El 621 (961)
...+...+. ........+...+..+...+..++..+..++..+. +.+... +..++..+..++.+.
T Consensus 295 ~~~l~~~l~-------~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~--~~~le~~~~~l~~~~ 365 (880)
T PRK02224 295 RDDLLAEAG-------LDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRED--ADDLEERAEELREEA 365 (880)
T ss_pred HHHHHHHhc-------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 333333332 22222233333333333333333333333333331 222222 344444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 622 MRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKG 658 (961)
Q Consensus 622 erLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~ 658 (961)
..+......+...|...+.++..++.++..+...+.+
T Consensus 366 ~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~ 402 (880)
T PRK02224 366 AELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555543
No 6
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.54 E-value=7.9e-10 Score=142.31 Aligned_cols=128 Identities=20% Similarity=0.146 Sum_probs=80.4
Q ss_pred hcChHHHHHHHHHHhhhhHHHH-HHhh--hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhh---hhHH
Q 002131 400 RILTEEKMSLALEVSGLLQSRI-VERA--SAKEELRM---VKADLESRTRRLEREKVELQSGL--EKELDRRS---SDWS 468 (961)
Q Consensus 400 ~~~~edRR~i~EEaaGi~Kyk~-aerk--~t~enL~R---i~~ELe~QLepLEkQaekAK~yL--EKEL~rrq---nE~~ 468 (961)
---|++||.|||||+|+-+-|. |.++ .++.||.| ++.||+.++.+|++++++++.|+ ..++-... ..+.
T Consensus 275 ~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~ 354 (1486)
T PRK04863 275 MRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQ 354 (1486)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999998765444 7777 99999999 89999999999999999999999 33322212 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 469 FKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRA 527 (961)
Q Consensus 469 ~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltsel 527 (961)
..+..++.......+.+..+.++...+..++..++.++..+...+..+...+..++.++
T Consensus 355 ~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el 413 (1486)
T PRK04863 355 ADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRA 413 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444443333333
No 7
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=6.7e-09 Score=124.97 Aligned_cols=332 Identities=20% Similarity=0.267 Sum_probs=171.0
Q ss_pred CCcchhhhhccCCCCCCCCcccccccccCCCCCCccccccCCCCCCcccccccccccCCCCCCCCCCCccchhhHHHHHH
Q 002131 285 IPITIEDIYCGSTNRYSDSNSDVIARKSYSLDDPFETVKNGCEKDDLSGLQKQNYFYGDHCEGLNSIETEEDEDVELRRR 364 (961)
Q Consensus 285 ~~~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 364 (961)
.++.++=+|..+.|+.+-..+.|.-+..+ |.-+..||+++.-.. - .+
T Consensus 74 ~sA~VEIvF~nsdnr~~~~k~Ev~lrRtV-------------------GlKKDeY~lD~k~Vt------k----~e---- 120 (1200)
T KOG0964|consen 74 MSASVEIVFDNSDNRLPRGKSEVSLRRTV-------------------GLKKDEYFLDNKMVT------K----GE---- 120 (1200)
T ss_pred EEEEEEEEEeCcccccCCCCCeEEEEEee-------------------cccchhhhccccccc------H----HH----
Confidence 56788888999888877555555544433 344455555322111 1 11
Q ss_pred hHHhhhhhhcchhhhhhhcccccCCCChh---HHHHHHhcChHHHHHHHHHHhhhhHHHH----HHhh--hH---HHHHH
Q 002131 365 SKEAEGRVMVLSEELEHETFLHDTGFDVP---AMIQTIRILTEEKMSLALEVSGLLQSRI----VERA--SA---KEELR 432 (961)
Q Consensus 365 ~ke~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~edRR~i~EEaaGi~Kyk~----aerk--~t---~enL~ 432 (961)
||=+ |+--||.+-..|.+- -+-++--++.-+|..|+.|+||.--|-- ..+. .| ++-+.
T Consensus 121 -------vvnL---LESAGFSrsNPYyIV~QGkI~~La~akD~eRL~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ 190 (1200)
T KOG0964|consen 121 -------VVNL---LESAGFSRSNPYYIVPQGKINELANAKDSERLELLKEVAGTRVYEERREESLKIMEETKQKREKIN 190 (1200)
T ss_pred -------HHHH---HHhcCcccCCCceEeechhhHHhhcCCcHHHHHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHH
Confidence 1111 344566666666532 2344455566899999999999987755 2222 33 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhh--------hhHHHHH---------------------HHHHHHHHHH
Q 002131 433 MVKADLESRTRRLEREKVELQSGL--EKELDRRS--------SDWSFKL---------------------EKYQMEEQRL 481 (961)
Q Consensus 433 Ri~~ELe~QLepLEkQaekAK~yL--EKEL~rrq--------nE~~~kI---------------------~~~EsEkk~L 481 (961)
-++..|+.+|..|+.+++++..|. +++=.... ++...++ .+.+.++..+
T Consensus 191 ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~ 270 (1200)
T KOG0964|consen 191 ELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDL 270 (1200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHH
Confidence 489999999999999999999998 33211111 2333333 2333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 482 RERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRN 561 (961)
Q Consensus 482 rERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e 561 (961)
...+.+|+....-+..+.+++..+..++..+..-++.+++.+..+.+.-.+.-..+...++++..+..+.+.+|..+.-.
T Consensus 271 ~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pk 350 (1200)
T KOG0964|consen 271 KCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPK 350 (1200)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44444444444444444444444444444444444444444444444444444444555555555555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 002131 562 FEEKEMECKDLQKSITRLLRTCSEQEKT-------------IAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVE 628 (961)
Q Consensus 562 ~eEleeei~eleKeIa~Lq~~Ik~lEKt-------------Ie~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~e 628 (961)
|..+..+...+.+.|+.++.+...+=.. -.=++.++ ..+... +.......+.++++++++....
T Consensus 351 y~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei-~~l~~~--i~~~ke~e~~lq~e~~~~e~~l 427 (1200)
T KOG0964|consen 351 YNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEI-EKLKRG--INDTKEQENILQKEIEDLESEL 427 (1200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHH-HHHHHH--HhhhhhHHHHHHHHHHHHHHHH
Confidence 6666666666666666655543333111 11122222 222222 3333334444555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002131 629 MSLRREIESYRVEVDSLRHENISLLNRLKGNGKE 662 (961)
Q Consensus 629 E~LReELEsle~EIEsLReEl~~L~rRLq~~~ne 662 (961)
.+.-++|..+...|.+.+.++......+..+..+
T Consensus 428 ~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~ 461 (1200)
T KOG0964|consen 428 KEKLEEIKELESSINETKGRMEEFDAENTELKRE 461 (1200)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHH
Confidence 4444555555444444444444443333333333
No 8
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=4.4e-08 Score=120.22 Aligned_cols=352 Identities=16% Similarity=0.241 Sum_probs=167.1
Q ss_pred hhhhcchhhhhhhcccccCCCC---------hhHHHHHHhcCh-----HHHHHHHHHHhhhhHHHH--HHhh--------
Q 002131 370 GRVMVLSEELEHETFLHDTGFD---------VPAMIQTIRILT-----EEKMSLALEVSGLLQSRI--VERA-------- 425 (961)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~-----edRR~i~EEaaGi~Kyk~--aerk-------- 425 (961)
.||.+|-+|.++--|..-++-+ ..++|||=+=.| .-|...+.|..+-...+. +++.
T Consensus 225 NRFLILQGEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k 304 (1293)
T KOG0996|consen 225 NRFLILQGEVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPK 304 (1293)
T ss_pred ceeeeehhhHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 5899999999988777766555 345555544443 445566666655444333 3322
Q ss_pred -------hHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 426 -------SAKEELRM--------VKADLESRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAE 490 (961)
Q Consensus 426 -------~t~enL~R--------i~~ELe~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeE 490 (961)
....+|.+ ++.+....+.+-..+.......+.-+......+-....++.+.-.+.++++...+.+
T Consensus 305 ~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn 384 (1293)
T KOG0996|consen 305 NEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKN 384 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223332 445555555555555555444441111111111122233333344444455555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 002131 491 QNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCI------------ 558 (961)
Q Consensus 491 knvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~i------------ 558 (961)
+..+++.+...++.+-....+.++++..+++++..++++.+.++.+++...+..+...+....+..++
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555444444444444444444444444443333333
Q ss_pred --HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 --KRNFE----EKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLR 632 (961)
Q Consensus 559 --R~e~e----Eleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LR 632 (961)
+..+. -...++..+++++..+..++....-++.-.+.+| ..+... .+...+.+++++..+.......++.+
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel-~~L~~~--~~~~~~~~e~lk~~L~~~~~~~~e~~ 541 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESEL-DILLSR--HETGLKKVEELKGKLLASSESLKEKK 541 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 1223334444444444444444444444444444 333333 44444555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHHHHHHHHHHhccccCCCCChHHHHHHHHHHh------cc
Q 002131 633 REIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKELWTRICCLQNQGISMLNESTQLCSQLLEFIK------GK 706 (961)
Q Consensus 633 eELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q~lS~~d~n~~lm~KLL~~IK------~k 706 (961)
..|..++.++.++++++......|..+..+......++. .+..+|-.++. .++.--.+ .++|.+|- +.
T Consensus 542 ~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~-~~rqrveE~ks-~~~~~~s~----~kVl~al~r~kesG~i 615 (1293)
T KOG0996|consen 542 TELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLN-KLRQRVEEAKS-SLSSSRSR----NKVLDALMRLKESGRI 615 (1293)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhhhh----hHHHHHHHHHHHcCCC
Confidence 555555555555555555555555555555443333222 12333444443 22222223 45555554 23
Q ss_pred ccccc------cccccch-h---cccCCccceEEE
Q 002131 707 AGQLS------ETKQGIE-F---IKNGLDGQFIIE 731 (961)
Q Consensus 707 ~~~~~------sVK~~~q-~---ig~tLds~FVV~ 731 (961)
.+|.= .|=..|. + .+..||- -||.
T Consensus 616 ~Gf~GRLGDLg~Id~kYDvAIsTac~~Ldy-iVVd 649 (1293)
T KOG0996|consen 616 PGFYGRLGDLGAIDEKYDVAISTACARLDY-IVVD 649 (1293)
T ss_pred CccccccccccccchHHHHHHHHhccccce-EEec
Confidence 34442 5555553 3 3557887 6775
No 9
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=4.6e-08 Score=118.46 Aligned_cols=303 Identities=15% Similarity=0.180 Sum_probs=150.1
Q ss_pred hcccccCCCChhH-----HHHHH----hcChHHHHHHHHHHhhhhHHHH----H----HhhhHHHHHHH--HHHHHHHHH
Q 002131 382 ETFLHDTGFDVPA-----MIQTI----RILTEEKMSLALEVSGLLQSRI----V----ERASAKEELRM--VKADLESRT 442 (961)
Q Consensus 382 ~~~~~~~~~~~~~-----~~~~i----~~~~edRR~i~EEaaGi~Kyk~----a----erk~t~enL~R--i~~ELe~QL 442 (961)
.+|++-.|++++- |-|-| -=+|.|=++++|||||---|.. | +||.|+=.-.+ +-.||.=.+
T Consensus 128 q~lF~SVqLNvNNP~FLIMQGrITkVLNMKp~EILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l 207 (1174)
T KOG0933|consen 128 QDLFCSVQLNVNNPHFLIMQGRITKVLNMKPSEILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRL 207 (1174)
T ss_pred HHHHHHhcccCCCCceEEecccchhhhcCCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3566666776653 32333 3489999999999999888876 3 33344422222 455666677
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhh-----hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 443 RRLEREKVELQSGL--EKELDRRS-----SD---WSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSM 512 (961)
Q Consensus 443 epLEkQaekAK~yL--EKEL~rrq-----nE---~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~k 512 (961)
..|..+....-.|. -+.|++.. .+ ...+......++.-...+|..+.+.......+|..++.++.++...
T Consensus 208 ~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~ 287 (1174)
T KOG0933|consen 208 EKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQ 287 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 77777766655555 44455544 22 3334444455555566666666666666666666666666666552
Q ss_pred H---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 513 I---------------THSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSIT 577 (961)
Q Consensus 513 I---------------e~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa 577 (961)
. ..+...+.+.+..+..+...|...+..+.++.....+.+..+..-+.++...+.....+.....
T Consensus 288 rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~ 367 (1174)
T KOG0933|consen 288 RDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQ 367 (1174)
T ss_pred HHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 1 1112222222222222222222222222222222222222222222222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhcc-----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q 002131 578 RLLRTCSEQEKTIAGLRDGFSDQIEKK-----------PALDKYDKHVALLQREQMRLTGVEMSLRREIES-------YR 639 (961)
Q Consensus 578 ~Lq~~Ik~lEKtIe~LrqEL~eEleke-----------~~vee~ek~Ie~lq~ElerLt~~eE~LReELEs-------le 639 (961)
.........++.++.+.++++..-+.+ ..+.+....+...+++++++.++......++.. ..
T Consensus 368 ~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~ 447 (1174)
T KOG0933|consen 368 EDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDI 447 (1174)
T ss_pred HHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHH
Confidence 222233333333444444442211100 123344555555555555555555555444443 34
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhh--hHhhhhHHHHHHHHHHHhc
Q 002131 640 VEVDSLRHENISLLNRLKGNGKESAA--LTMKLDKELWTRICCLQNQ 684 (961)
Q Consensus 640 ~EIEsLReEl~~L~rRLq~~~ne~~~--~~~kl~~El~~~I~~lq~q 684 (961)
.+++-+..+...+..+|+.++-+++. ...+....|...|..|...
T Consensus 448 ~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~ 494 (1174)
T KOG0933|consen 448 EELDALQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDE 494 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667888888899988887764 2333334445555555554
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.46 E-value=5.2e-08 Score=122.36 Aligned_cols=163 Identities=21% Similarity=0.267 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGL---EKELDRRS---SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREA 507 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yL---EKEL~rrq---nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~ 507 (961)
-+.++..++..++.+...++..+ +.++...+ ..+...+..++.++..+.+++..+......++.++..+..++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 326 (1179)
T TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544 33344443 5556777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 508 ESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQE 587 (961)
Q Consensus 508 El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lE 587 (961)
.+...+..+..++..+..+++.+..++..+...+.++...+..+...+..++..+..+..++..+...|..+...+..++
T Consensus 327 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 406 (1179)
T TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777776666666666666665555555555555555555555555544444444444444444
Q ss_pred HHHHHHhhh
Q 002131 588 KTIAGLRDG 596 (961)
Q Consensus 588 KtIe~LrqE 596 (961)
..+..+..+
T Consensus 407 ~~~~~l~~~ 415 (1179)
T TIGR02168 407 ARLERLEDR 415 (1179)
T ss_pred HHHHHHHHH
Confidence 444333333
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.46 E-value=9.9e-08 Score=120.37 Aligned_cols=222 Identities=20% Similarity=0.272 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhh---hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGL---EKELDRRS---SDWS-FKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNERE 506 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yL---EKEL~rrq---nE~~-~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi 506 (961)
-+.++..++..++.+...++..+ +.++...+ ..+. ..+..++.++..+.+++..++.+...++.++..+..++
T Consensus 245 ~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 324 (1164)
T TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443 33333333 1111 34444555566666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 507 AESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQ 586 (961)
Q Consensus 507 ~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~l 586 (961)
..+...+..+..+++.+..+++.+..++..+...+.++...+...+..+..++..+..+..++..+...|..+...+..+
T Consensus 325 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 404 (1164)
T TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 587 EKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKG 658 (961)
Q Consensus 587 EKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~ 658 (961)
+.++..+.+++ +.+... +..+...++.++.++..+......+..++..++.+++.+..++..+..++..
T Consensus 405 ~~~~~~l~~~l-~~l~~~--~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~ 473 (1164)
T TIGR02169 405 KRELDRLQEEL-QRLSEE--LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473 (1164)
T ss_pred HHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555 444433 4444444444444444444444444444444444444444444444444433
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.43 E-value=2.7e-08 Score=127.10 Aligned_cols=250 Identities=22% Similarity=0.287 Sum_probs=141.3
Q ss_pred HHHHhhhhHHHHHHhh--hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhh---hhHHHHHHHHHHHH
Q 002131 410 ALEVSGLLQSRIVERA--SAKEELRM---VKADLESRTRRLEREKVELQSGL---EKELDRRS---SDWSFKLEKYQMEE 478 (961)
Q Consensus 410 ~EEaaGi~Kyk~aerk--~t~enL~R---i~~ELe~QLepLEkQaekAK~yL---EKEL~rrq---nE~~~kI~~~EsEk 478 (961)
.+-+..+.+|+....+ .+.+++.+ .+.++..++...+.+++.++..+ ..++...+ ..+...+...+.++
T Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~ 304 (1163)
T COG1196 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEI 304 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444442222 55555555 55666666666666666666666 33344334 45556777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 002131 479 QRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLS----ELGEKFRAAEAD 554 (961)
Q Consensus 479 k~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqele----El~ee~qeaeEe 554 (961)
..+++++.++......++..+..++.++......+...+.....+......+......++.... +....+...++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 384 (1163)
T COG1196 305 SLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREE 384 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888888888888777777777777777777777777644444444443333333333333333 344444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 555 LYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRRE 634 (961)
Q Consensus 555 ld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReE 634 (961)
+..+..+.....+++..+..+|..+...+..+...+..+..++ .++..+ +..+..+++....++..|+...+.++..
T Consensus 385 ~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 461 (1163)
T COG1196 385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEEL-KELEAE--LEELQTELEELNEELEELEEQLEELRDR 461 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555 444444 4445555555555555665555555565
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002131 635 IESYRVEVDSLRHENISLLNRLKGNGKE 662 (961)
Q Consensus 635 LEsle~EIEsLReEl~~L~rRLq~~~ne 662 (961)
+..++.++..++..+..+...++.....
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 489 (1163)
T COG1196 462 LKELERELAELQEELQRLEKELSSLEAR 489 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555555555555555555544433
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=99.41 E-value=1.5e-07 Score=116.47 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=19.3
Q ss_pred cChHHHHHHHHHHhhhhHHHH
Q 002131 401 ILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 401 ~~~edRR~i~EEaaGi~Kyk~ 421 (961)
..|.+|+.||.++.|+-.|..
T Consensus 142 ~~~~~r~~~~~~~~~~~~~~~ 162 (880)
T PRK03918 142 ESDESREKVVRQILGLDDYEN 162 (880)
T ss_pred cCcHHHHHHHHHHhCCHHHHH
Confidence 479999999999999999977
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=99.35 E-value=3.3e-07 Score=113.79 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
...+.+++.....+.+++..+...+...+..+..++.++
T Consensus 355 e~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el 393 (880)
T PRK02224 355 EERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333443333344444433
No 15
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=2.2e-07 Score=113.55 Aligned_cols=535 Identities=17% Similarity=0.172 Sum_probs=270.5
Q ss_pred hhhhhhcccccCC-CCh--hHHHHHHhcChHHHHHHHHHHhhhhHHHH------HHhhhHHHHHHH---HHHHHHHHHHH
Q 002131 377 EELEHETFLHDTG-FDV--PAMIQTIRILTEEKMSLALEVSGLLQSRI------VERASAKEELRM---VKADLESRTRR 444 (961)
Q Consensus 377 ~~~~~~~~~~~~~-~~~--~~~~~~i~~~~edRR~i~EEaaGi~Kyk~------aerk~t~enL~R---i~~ELe~QLep 444 (961)
.+|+..|++=+.+ |-| -++..--.-.|.++=.||||++|=..||- .+...|.+.... -+..|..+...
T Consensus 113 ~eLekinIlVkARNFLVFQGdVE~IA~k~PkElt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~ 192 (1141)
T KOG0018|consen 113 EELEKINILVKARNFLVFQGDVEKIAGKNPKELTALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKE 192 (1141)
T ss_pred HHHhhcceeeeeeeEEEecChHHHHhccCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHH
Confidence 4555555443322 111 13444445679999999999999999988 222233333333 22223333333
Q ss_pred HHHHHHHHHHHH--HHHHHhhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 445 LEREKVELQSGL--EKELDRRS--------SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMIT 514 (961)
Q Consensus 445 LEkQaekAK~yL--EKEL~rrq--------nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe 514 (961)
-+.+++++..|+ --+..+.| --+...|+.+-.+..++...+..+........++|.....+...+...+.
T Consensus 193 aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~ 272 (1141)
T KOG0018|consen 193 AKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQ 272 (1141)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544 11111222 22344444555555555555555554444444555544444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 515 HSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLR 594 (961)
Q Consensus 515 ~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~Lr 594 (961)
.++..+......+.+ +.++-.+..+......++..++-.+...+..+......+..++++|..+...-...+++|...+
T Consensus 273 ~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~ 351 (1141)
T KOG0018|consen 273 KVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERS 351 (1141)
T ss_pred HHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555 5566667777777777777777788888888888888888888888888888888888877766
Q ss_pred hhhh---Hhhhcc----------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 595 DGFS---DQIEKK----------------PALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNR 655 (961)
Q Consensus 595 qEL~---eEleke----------------~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rR 655 (961)
+.-. ...+.. .-+.-++.....-++.+.++......+...+..++..++.+...++.+...
T Consensus 352 q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~ 431 (1141)
T KOG0018|consen 352 QERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAK 431 (1141)
T ss_pred hhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6210 111100 001122233333344444444445555555555555555555444444444
Q ss_pred hhhcCCchhhhH-----------------hhhhHHH---HHHHHHHHhccccCCCCChHHHHHHHHHHhcccccccccc-
Q 002131 656 LKGNGKESAALT-----------------MKLDKEL---WTRICCLQNQGISMLNESTQLCSQLLEFIKGKAGQLSETK- 714 (961)
Q Consensus 656 Lq~~~ne~~~~~-----------------~kl~~El---~~~I~~lq~q~lS~~d~n~~lm~KLL~~IK~k~~~~~sVK- 714 (961)
+..+........ ..++.+| ...|.++. +=..=|.+ +.++..+|..-.+|...|+
T Consensus 432 i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das--~dr~e~sR---~~~~~eave~lKr~fPgv~G 506 (1141)
T KOG0018|consen 432 ITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDAS--ADRHEGSR---RSRKQEAVEALKRLFPGVYG 506 (1141)
T ss_pred HHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh--hhhcccHH---HHHHHHHHHHHHHhCCCccc
Confidence 443333222221 2222222 11111111 11222444 6777777776667887555
Q ss_pred ----------ccc----h-hcccCCccceEEE--------------Ee---c---ccccc----------cccchhhhcc
Q 002131 715 ----------QGI----E-FIKNGLDGQFIIE--------------SD---M---KVQGF----------KRKIESLITS 749 (961)
Q Consensus 715 ----------~~~----q-~ig~tLds~FVV~--------------~~---i---K~q~f----------~~Gka~l~~s 749 (961)
.-| - ++|+-.|| -||+ +. + +++.+ ..|-+ +..
T Consensus 507 rviDLc~pt~kkyeiAvt~~Lgk~~da-IiVdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr~~~g~--rlv 583 (1141)
T KOG0018|consen 507 RVIDLCQPTQKKYEIAVTVVLGKNMDA-IIVDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLRELGGV--RLV 583 (1141)
T ss_pred hhhhcccccHHHHHHHHHHHHhcccce-EEeccHHHHHHHHHHHHHhccCCccccchhhhhcCcccccccCcCCe--EEE
Confidence 233 3 78888888 7776 11 1 11111 00001 111
Q ss_pred ---------HHHHH-----------------HHhcc---cCcccc----cccccccccccC-Cccccccccc-hhhhc--
Q 002131 750 ---------LQTMS-----------------ALLHE---KSSLVA----SKSQSLHEDVNL-SGKLNDQTAG-EIMRS-- 792 (961)
Q Consensus 750 ---------l~TIl-----------------slL~~---k~NV~~----~~~~SG~~~sgg-lD~v~Y~~~~-d~lr~-- 792 (961)
|.-++ .|..+ .-.|.. .=++|| -++|| .| -+++-.. |-|+-
T Consensus 584 ~Dvi~ye~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~k~valdGtl~~ksG-lmsGG~s~-~~wdek~~~~L~~~k 661 (1141)
T KOG0018|consen 584 IDVINYEPEYEKAVQFACGNALVCDSVEDARDLAYGGEIRFKVVALDGTLIHKSG-LMSGGSSG-AKWDEKEVDQLKEKK 661 (1141)
T ss_pred EEecCCCHHHHHHHHHHhccceecCCHHHHHHhhhcccccceEEEeeeeEEeccc-eecCCccC-CCcCHHHHHHHHHHH
Confidence 11111 34443 112222 556888 66777 55 2241000 11110
Q ss_pred -----cchh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHH--------------HHH
Q 002131 793 -----ELKA---ETLLTSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVT--------------HKL 850 (961)
Q Consensus 793 -----klks---es~~~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~--------------~k~ 850 (961)
.++. ...-.+-..-+|...+..+..++.++....+.....+.|++.+.+++..+. ..+
T Consensus 662 ~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~ 741 (1141)
T KOG0018|consen 662 ERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEM 741 (1141)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 0000 000123333445555666666666666666666777777777777655433 566
Q ss_pred HHHHHhhhhhhhhHHH---------------HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002131 851 KDLELQMLKKDESINQ---------------LQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNV 915 (961)
Q Consensus 851 k~LE~q~~K~~D~I~~---------------lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~ 915 (961)
++|+.+|++..|+|=. .+. -|+.++....+.+.+.+|...++-..+ +...+++..+...+..
T Consensus 742 ~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~ 818 (1141)
T KOG0018|consen 742 KELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-QQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVED 818 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHHH
Confidence 7777888888773311 111 344555566666666666666655444 3344444444444444
Q ss_pred HHHHHHHHHH
Q 002131 916 LKKKIEVLDE 925 (961)
Q Consensus 916 lkk~ie~Lee 925 (961)
+...++.++.
T Consensus 819 ~~~~~~~~~~ 828 (1141)
T KOG0018|consen 819 LEKEIEGLKK 828 (1141)
T ss_pred HHHhHHhhHH
Confidence 4444443333
No 16
>PRK01156 chromosome segregation protein; Provisional
Probab=99.31 E-value=9.6e-07 Score=110.12 Aligned_cols=28 Identities=11% Similarity=-0.054 Sum_probs=24.4
Q ss_pred HHHHHHhcChHHHHHHHHHHhhhhHHHH
Q 002131 394 AMIQTIRILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 394 ~~~~~i~~~~edRR~i~EEaaGi~Kyk~ 421 (961)
.+...+.+.|.+|+.+|.++.|+-.|..
T Consensus 139 ~~~~l~~~~~~~r~~~ld~~~~~~~~~~ 166 (895)
T PRK01156 139 EMDSLISGDPAQRKKILDEILEINSLER 166 (895)
T ss_pred chHHHHhCCHHHHHHHHHHHhChHHHHH
Confidence 3455678899999999999999999987
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.26 E-value=9.6e-07 Score=115.31 Aligned_cols=225 Identities=16% Similarity=0.198 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGL---EKELDRRS----------SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVS 500 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yL---EKEL~rrq----------nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe 500 (961)
++.++..++...+.+........ ++++.... ..|..+....+..++.|.+++..+.+.+.+|.++-.
T Consensus 909 ~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk 988 (1930)
T KOG0161|consen 909 ELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKK 988 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555443333333 23333322 456666667777777777777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 501 TFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLL 580 (961)
Q Consensus 501 ~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq 580 (961)
.+++.+.++.+.+...+.+...+.....++...++.++..+.+......+.....+.+..++...+..+..+...+..+.
T Consensus 989 ~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~ 1068 (1930)
T KOG0161|consen 989 ELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELD 1068 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002131 581 RTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNG 660 (961)
Q Consensus 581 ~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ 660 (961)
+++...+-++.++..++ ++.... +..+.+.|..++..+..|.+..+.-|.....++.....|.+++..+..+|.+.+
T Consensus 1069 ~~l~kke~El~~l~~k~-e~e~~~--~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~ 1145 (1930)
T KOG0161|consen 1069 NQLKKKESELSQLQSKL-EDEQAE--VAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQG 1145 (1930)
T ss_pred HHHHHHHHHHHHHHHHh-hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888 666666 788888888888888888888888888888888888888888888888888874
Q ss_pred C
Q 002131 661 K 661 (961)
Q Consensus 661 n 661 (961)
.
T Consensus 1146 ~ 1146 (1930)
T KOG0161|consen 1146 G 1146 (1930)
T ss_pred h
Confidence 3
No 18
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.23 E-value=8.5e-06 Score=104.99 Aligned_cols=372 Identities=18% Similarity=0.228 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HH
Q 002131 434 VKADLESRTRRLEREKVELQSGL---EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQR-EVSTFNE---RE 506 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yL---EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqr-EIe~lee---Ki 506 (961)
....++.++..++.....++..+ +..+...+.+|...+..+..+...+..+|..++.+...|.. .|+.+.. ++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l 354 (1201)
T PF12128_consen 275 DEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQL 354 (1201)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Confidence 44444444455555555555544 33333333667777777777777777777777777777654 2333222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHH
Q 002131 507 AESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNL--------SELGEKFRAAEADLYC----IKRNFEEKEMECK-DLQ 573 (961)
Q Consensus 507 ~El~~kIe~leeqIe~ltselEeleeELeeleqel--------eEl~ee~qeaeEeld~----iR~e~eEleeei~-ele 573 (961)
.+....++.++..+..+++....++.+...+...+ ..++.+.+.+++++.. +...+..+..+.. +.+
T Consensus 355 ~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~ 434 (1201)
T PF12128_consen 355 PEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQ 434 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333334444444444444433333333332222 2222222222222222 1222222222222 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 574 KSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLL 653 (961)
Q Consensus 574 KeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~ 653 (961)
..+..++.....+...+..+...+ ... ....+....++..+..++.+..........+..++.+...++.+.....
T Consensus 435 ~~~~~~~~~~~~~~~~l~~l~~~~-~~~---~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 510 (1201)
T PF12128_consen 435 EQLEELQEQREQLKSELAELKQQL-KNP---QYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAE 510 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443 111 1123333344444444444444444444444444444444444444443
Q ss_pred HHhhhcCCchhhhHhhhhHHHHHHHHHHHhccccCCCCChHHHHHHHHHHh-ccccccccccccch-hcccCCccceEEE
Q 002131 654 NRLKGNGKESAALTMKLDKELWTRICCLQNQGISMLNESTQLCSQLLEFIK-GKAGQLSETKQGIE-FIKNGLDGQFIIE 731 (961)
Q Consensus 654 rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q~lS~~d~n~~lm~KLL~~IK-~k~~~~~sVK~~~q-~ig~tLds~FVV~ 731 (961)
..|+.+. .--.+++.+|..++. .|.|-..+ |+.++. ...+| + .||+=+|-- +.
T Consensus 511 ~~l~~~~--------~~~~~~~~~~~~l~~-~L~p~~gS------L~~fL~~~~p~W--------e~tIGKVid~e-LL- 565 (1201)
T PF12128_consen 511 EELRQAR--------RELEELRAQIAELQR-QLDPQKGS------LLEFLRKNKPGW--------EQTIGKVIDEE-LL- 565 (1201)
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHH-hhCCCCCc------HHHHHHhCCCcH--------HHHhHhhCCHH-Hh-
Confidence 3333211 111224777888877 78888888 666666 66789 7 788877771 00
Q ss_pred EecccccccccchhhhccHHHHHHHhcccCcccccccccccccc---cCCccccccccchhhhccchhhhhhhHHHHHHH
Q 002131 732 SDMKVQGFKRKIESLITSLQTMSALLHEKSSLVASKSQSLHEDV---NLSGKLNDQTAGEIMRSELKAETLLTSLLREKL 808 (961)
Q Consensus 732 ~~iK~q~f~~Gka~l~~sl~TIlslL~~k~NV~~~~~~SG~~~s---gglD~v~Y~~~~d~lr~klkses~~~s~LkE~I 808 (961)
++-.+. |.-+...+..|=|.+. +.++...|..+.+.++-++..-......+.+..
T Consensus 566 ~r~dL~----------------------P~l~~~~~~dslyGl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~ 623 (1201)
T PF12128_consen 566 YRTDLE----------------------PQLVEDSGSDSLYGLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQ 623 (1201)
T ss_pred cCCCCC----------------------CeecCCCcccccceeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1111110001111111 225554464344444444332222234445555
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 002131 809 YSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQ 856 (961)
Q Consensus 809 ~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q 856 (961)
.+.+..+.+....+..+.+.....+.+.++....+..++.....++.+
T Consensus 624 ~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 671 (1201)
T PF12128_consen 624 EELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQE 671 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444555555555555555555444444333
No 19
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.22 E-value=4.1e-06 Score=103.45 Aligned_cols=249 Identities=16% Similarity=0.204 Sum_probs=134.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 418 QSRIVERASAKEELRMVKADLESRTRRLEREKVELQSGL--EKELDRRS-SDWSFKLEKYQMEEQRLRERVRELAEQNVS 494 (961)
Q Consensus 418 Kyk~aerk~t~enL~Ri~~ELe~QLepLEkQaekAK~yL--EKEL~rrq-nE~~~kI~~~EsEkk~LrERlreLeEknvs 494 (961)
+-.+++...+-.+|.+=+.+.+..+..++.-......-. ..++.=.. ++....+...+.+++..++++..|.
T Consensus 227 ~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~----- 301 (1074)
T KOG0250|consen 227 KELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQ----- 301 (1074)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 333355555555555544555555544433222222111 33333222 4555455555555555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 495 LQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQK 574 (961)
Q Consensus 495 LqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleK 574 (961)
+.+.....++.++..++++++.++..+..+.+....+++.+.+.+..++.++..++++...+...+..++.....+++
T Consensus 302 --~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k 379 (1074)
T KOG0250|consen 302 --EKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEK 379 (1074)
T ss_pred --HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 575 SITRLLRTC-SEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLL 653 (961)
Q Consensus 575 eIa~Lq~~I-k~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~ 653 (961)
.|+.++.+. +.+...+...++++ +.+... ++.++..+..+..+++.+.......+++....+.+|..|+..+....
T Consensus 380 ~I~~~~~~~~~~~~~~~~e~e~k~-~~L~~e--vek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 380 QIADLEKQTNNELGSELEERENKL-EQLKKE--VEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665 55555566666666 555555 55556666666666666666666666666555555555555555554
Q ss_pred HHhhhcCCc-------hhhhHhhhhHHHHH
Q 002131 654 NRLKGNGKE-------SAALTMKLDKELWT 676 (961)
Q Consensus 654 rRLq~~~ne-------~~~~~~kl~~El~~ 676 (961)
..|+.+.+. .++.+.++-++|.+
T Consensus 457 ~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r 486 (1074)
T KOG0250|consen 457 EELKDLKKTKTDKVSAFGPNMPQLLRAIER 486 (1074)
T ss_pred HHHHHHHhcccchhhhcchhhHHHHHHHHH
Confidence 444443332 33445555555533
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=99.21 E-value=6.6e-06 Score=102.14 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 002131 863 SINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQY 902 (961)
Q Consensus 863 ~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~l 902 (961)
.+..++..+.+...++..+.+.+..+...+..+.++...+
T Consensus 660 ~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 660 EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443333
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=6.2e-06 Score=107.05 Aligned_cols=211 Identities=11% Similarity=0.108 Sum_probs=110.6
Q ss_pred hhcchhhhhhhcccccCCCChhHHHHHHhcChHHHHHHHHHHhhhhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 372 VMVLSEELEHETFLHDTGFDVPAMIQTIRILTEEKMSLALEVSGLLQSRIVERA--SAKEELRMVKADLESRTRRLEREK 449 (961)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~edRR~i~EEaaGi~Kyk~aerk--~t~enL~Ri~~ELe~QLepLEkQa 449 (961)
+-|..+-+..-=|+|-..|.. +.+.|.+|..+|+++.|+.+|+.+.-+ .....+..-+.+++..+..|+...
T Consensus 143 lGv~~~~f~~vi~~~Qge~~~------~~~~~~~rk~~~d~if~~~~y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 216 (1311)
T TIGR00606 143 LGVSKAVLNNVIFCHQEDSNW------PLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYK 216 (1311)
T ss_pred hCCCHHHHhhceeeCCccccc------ccCChHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444444566666642 347899999999999999999874322 333333334445555555555544
Q ss_pred HHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 002131 450 VELQSGLEKELDRRS---SDWSFKLEKYQMEEQRLRERVRELAEQNVSL---QREVSTFNEREAESRSMITHSEQQL-KD 522 (961)
Q Consensus 450 ekAK~yLEKEL~rrq---nE~~~kI~~~EsEkk~LrERlreLeEknvsL---qrEIe~leeKi~El~~kIe~leeqI-e~ 522 (961)
+.|.. ++..|...+ ..+...+...+.++..+.+++..+...+..+ ..++..+..+......-+..+...+ ..
T Consensus 217 ~~~~~-ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~ 295 (1311)
T TIGR00606 217 EKACE-IRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKV 295 (1311)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44433 223333333 4455555555556666666555555444333 3333444443334444444443322 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 523 LTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 523 ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
+....+.+...+.++...+.+...+....+.++..+..+...+.++...+...+..++......+..
T Consensus 296 l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~ 362 (1311)
T TIGR00606 296 FQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEH 362 (1311)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222344555555555555555555555555555555555555555555555555555555555555
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.19 E-value=2.8e-06 Score=111.16 Aligned_cols=142 Identities=19% Similarity=0.219 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHH-------HHHHHHHHhhhhhhh-------hHHH
Q 002131 801 TSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVT-------HKLKDLELQMLKKDE-------SINQ 866 (961)
Q Consensus 801 ~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~-------~k~k~LE~q~~K~~D-------~I~~ 866 (961)
-..+.+.|...+..++-.....+.+-+....++.|+..+...+.... .+.+.++..+...-. -++.
T Consensus 1381 kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~ 1460 (1930)
T KOG0161|consen 1381 KKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDA 1460 (1930)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554445566666665555554333 333433333333322 5555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHHhhhhcC
Q 002131 867 LQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITILKDTIG 942 (961)
Q Consensus 867 lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil~D~I~ 942 (961)
.+.+......++-.+...++++.+.++.+..+-+.+...+..+...+..+-+.++.|+......+.++.-|+..+.
T Consensus 1461 aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLe 1536 (1930)
T KOG0161|consen 1461 AQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALE 1536 (1930)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666777777777777777777777777777777777788888888888888888888877776553
No 23
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.09 E-value=1.4e-05 Score=103.88 Aligned_cols=125 Identities=13% Similarity=0.132 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhh
Q 002131 530 YTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDK 609 (961)
Q Consensus 530 leeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee 609 (961)
++.++..+...+.++...+......+..++.+...+.. +......|.++...+..+++.|..+..++ ...+...++.+
T Consensus 749 l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l-~~~~~~~s~~e 826 (1311)
T TIGR00606 749 LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKL-QGSDLDRTVQQ 826 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccCCHHH
Confidence 33333334444444444444444444433433333332 33334455666888888888888888887 44444435677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 610 YDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRL 656 (961)
Q Consensus 610 ~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRL 656 (961)
++..+..++.++..|....+.+..+.+.++.+|..|+..+..+....
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~k 873 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK 873 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766666666666666666655544444443333
No 24
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=4.9e-05 Score=94.36 Aligned_cols=194 Identities=18% Similarity=0.250 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMIT----HSEQQLKDLTRRAEQYTEENGDLRQN 540 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe----~leeqIe~ltselEeleeELeeleqe 540 (961)
--+.++|.+++.+++-.+..+.+++.--.....+|..++.++..+..... .++.....++.+-+.+.+++..++++
T Consensus 408 K~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~eke 487 (1293)
T KOG0996|consen 408 KRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKE 487 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 33556666666666666666666655555555555555555544443332 23444455555556666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HhhhcchhhhhhHHHH
Q 002131 541 LSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFS------DQIEKKPALDKYDKHV 614 (961)
Q Consensus 541 leEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~------eEleke~~vee~ek~I 614 (961)
+.-...++..++.+++-+++++..+...-..+.+.+..++..+......+.....++. ..+..+ +.+.++.+
T Consensus 488 l~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e--~~~~~k~l 565 (1293)
T KOG0996|consen 488 LMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQE--LKEKEKEL 565 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHhH
Confidence 7777778888888888888887777777777777777777777665555444444430 333333 44455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhcC
Q 002131 615 ALLQREQMRLTGVEMSLRREIESYRVEVDSLRH--ENISLLNRLKGNG 660 (961)
Q Consensus 615 e~lq~ElerLt~~eE~LReELEsle~EIEsLRe--El~~L~rRLq~~~ 660 (961)
..+..+...|......++++++.+.....+-+- +.-....++++.|
T Consensus 566 ~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG 613 (1293)
T KOG0996|consen 566 PKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESG 613 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcC
Confidence 555555555555555556666555554444443 3333445566655
No 25
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.97 E-value=8.4e-05 Score=96.54 Aligned_cols=212 Identities=24% Similarity=0.294 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGLEKELD---RRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESR 510 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yLEKEL~---rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~ 510 (961)
...-++.++..|+..+.+++..++.+.+ ..++++...+..+++-+.-+...+..+-.........++.++.++.++.
T Consensus 799 ~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~ 878 (1822)
T KOG4674|consen 799 TKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777777777777777732222 2225566666666666665555555555555666666666666666665
Q ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 002131 511 SMITHSEQQLKDLT-------------------RRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEE----KEM 567 (961)
Q Consensus 511 ~kIe~leeqIe~lt-------------------selEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eE----lee 567 (961)
.+|.....+..-+. .+...+..+|......+.+.++.+......+...+..+.+ ...
T Consensus 879 k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea 958 (1822)
T KOG4674|consen 879 KRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEA 958 (1822)
T ss_pred HHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 55555543332222 2233335666666677777777777777777766666554 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 568 ECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKK-PALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSL 645 (961)
Q Consensus 568 ei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke-~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsL 645 (961)
.+..+++.|..++..+..++.+|..|+.++.-...+. .-+..+.+.+.-++.++..+.....+....+..++..+...
T Consensus 959 ~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~ 1037 (1822)
T KOG4674|consen 959 KIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTE 1037 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888888888888887753333222 01344444555555555555555544444444444444333
No 26
>PRK01156 chromosome segregation protein; Provisional
Probab=98.95 E-value=0.00027 Score=88.65 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 614 VALLQREQMRLTGVEMSLRREIESYRVEVDSLR 646 (961)
Q Consensus 614 Ie~lq~ElerLt~~eE~LReELEsle~EIEsLR 646 (961)
++.++.++..|......+..++..++..+++|+
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.89 E-value=8.7e-06 Score=99.82 Aligned_cols=405 Identities=20% Similarity=0.251 Sum_probs=225.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 482 RERVRELAEQNVSLQREVSTFNEREAESRSMITHS-EQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKR 560 (961)
Q Consensus 482 rERlreLeEknvsLqrEIe~leeKi~El~~kIe~l-eeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~ 560 (961)
+-++..|+..+.+|+.+++....++..+...|..+ .-.++......+....++.- +++++.....+...+..
T Consensus 2 q~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~-------~k~qlr~~q~e~q~~~~ 74 (775)
T PF10174_consen 2 QAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSR-------LKEQLRVTQEENQKAQE 74 (775)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh-------HHHHHHHHHhhHHHHHH
Confidence 34677888888888888888888888888887663 33333333333333333333 33333333333334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 561 NFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRV 640 (961)
Q Consensus 561 e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~ 640 (961)
.+..++.++ .++.++.++........-....+.. + .-..+. +.-+.+..++++.++..|....+.+...|+.+..
T Consensus 75 ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-l-d~~~~q--~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~ 149 (775)
T PF10174_consen 75 EIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-L-DKAQEQ--FERLQAERERLQRELERLRKTLEELQLRIETQQQ 149 (775)
T ss_pred HHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-h-hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555 5555555555544444333333333 3 222222 3333444455555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhh-----hHhhhhHHHHHHHHHHHhccccCCCCChHHHHHHHHHHhccccccccccc
Q 002131 641 EVDSLRHENISLLNRLKGNGKESAA-----LTMKLDKELWTRICCLQNQGISMLNESTQLCSQLLEFIKGKAGQLSETKQ 715 (961)
Q Consensus 641 EIEsLReEl~~L~rRLq~~~ne~~~-----~~~kl~~El~~~I~~lq~q~lS~~d~n~~lm~KLL~~IK~k~~~~~sVK~ 715 (961)
.++.....+..|...|+..|-.... .....-.++.+.+..|+. -+.-|+.- +..+-..+.+...-
T Consensus 150 ~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~-lle~~e~~---~~~~r~~l~~~~~~------ 219 (775)
T PF10174_consen 150 TLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLES-LLERKEKE---HMEAREQLHRRLQM------ 219 (775)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHH---hhhhhHHHHHHhhc------
Confidence 5556666666677777655444311 111111222444444443 23333333 12222222221100
Q ss_pred cchhcccCCccceEEEEecccccccccchhhhccHHHHH--------HH---hcc-cCcccccccccccccccCCccccc
Q 002131 716 GIEFIKNGLDGQFIIESDMKVQGFKRKIESLITSLQTMS--------AL---LHE-KSSLVASKSQSLHEDVNLSGKLND 783 (961)
Q Consensus 716 ~~q~ig~tLds~FVV~~~iK~q~f~~Gka~l~~sl~TIl--------sl---L~~-k~NV~~~~~~SG~~~sgglD~v~Y 783 (961)
- --+| + +..++|++ +| |.. ...|.+..++-+ .... +
T Consensus 220 -----~-~~~a---------------~----t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~-~~~~---~--- 267 (775)
T PF10174_consen 220 -----E-RDDA---------------E----TEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGE-LSEA---D--- 267 (775)
T ss_pred -----C-CCch---------------h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccc---c---
Confidence 0 0111 1 11233333 11 111 111222111111 0000 0
Q ss_pred cccchhh--hccchhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 002131 784 QTAGEIM--RSELKAETLL-----TSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQ 856 (961)
Q Consensus 784 ~~~~d~l--r~klkses~~-----~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q 856 (961)
+|.+ .+.+--+... +.-++-.|..+..|+..++.++.++-.....+|..+..+...|+....+...|--.
T Consensus 268 ---r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd 344 (775)
T PF10174_consen 268 ---RDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD 344 (775)
T ss_pred ---hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 1111000000 33455556666666666667777666666666777777777776666666666443
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHH
Q 002131 857 MLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITI 936 (961)
Q Consensus 857 ~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsi 936 (961)
+++|...+.+...+|....+.+..+.+++..+.-++..++..++....+|++|.++|+.|.+.+..++.++..
T Consensus 345 -------ve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~ 417 (775)
T PF10174_consen 345 -------VEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDE 417 (775)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCccccC
Q 002131 937 LKDTIGSKPFDLLAS 951 (961)
Q Consensus 937 l~D~I~~~~~~~~~s 951 (961)
+++-+.+ +.|-.-+
T Consensus 418 ~k~Rl~~-~~d~~~~ 431 (775)
T PF10174_consen 418 EKERLSS-QADSSNE 431 (775)
T ss_pred HHHHHhc-cccccch
Confidence 9999987 6665433
No 28
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.86 E-value=0.00022 Score=92.90 Aligned_cols=451 Identities=18% Similarity=0.192 Sum_probs=257.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 426 SAKEELRMVKADLESRTRRLEREKVELQSGLEKELDRRS-SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNE 504 (961)
Q Consensus 426 ~t~enL~Ri~~ELe~QLepLEkQaekAK~yLEKEL~rrq-nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~lee 504 (961)
.+.-+..+.+.+++.++..|+......-... .+-+-- +++...+....++...+.-++.++.-.+..+.++-.....
T Consensus 45 k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~--~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~ 122 (1822)
T KOG4674|consen 45 KTEVNHEQQLSELEKKILRLEQRLSDLSRQA--KLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQE 122 (1822)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4455555555555555555554443322211 111111 3344444444455555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 505 REAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCS 584 (961)
Q Consensus 505 Ki~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik 584 (961)
....+..-+.....+++.++.+...+..++..+...+-++..+.+.+...--.++-....+.++..-++.++.-|.+.+.
T Consensus 123 qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~ 202 (1822)
T KOG4674|consen 123 QKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELS 202 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555545555555555555555555555555555
Q ss_pred HHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 002131 585 EQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESA 664 (961)
Q Consensus 585 ~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~ 664 (961)
.--.....++++. +. ++..++..|.++......++..+..+...+..|...+..+.-.+.++.+-..
T Consensus 203 ~~~ekll~~~re~-----s~--------~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~ 269 (1822)
T KOG4674|consen 203 KVNEKLLSLRREH-----SI--------EVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAE 269 (1822)
T ss_pred HHHHHHHHHHhhh-----hh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 5544444444443 11 2455556666666666666666777777777777777777777777777777
Q ss_pred hhHhhhhHHH--HHHHHHHHhccccCCCCChHHHHHHHHHHhccccccccccccchhcccCCccceEEEEeccccccccc
Q 002131 665 ALTMKLDKEL--WTRICCLQNQGISMLNESTQLCSQLLEFIKGKAGQLSETKQGIEFIKNGLDGQFIIESDMKVQGFKRK 742 (961)
Q Consensus 665 ~~~~kl~~El--~~~I~~lq~q~lS~~d~n~~lm~KLL~~IK~k~~~~~sVK~~~q~ig~tLds~FVV~~~iK~q~f~~G 742 (961)
....+..+|| +.+|-+|=...++-|-.. |.-|++.|.....- |+.- ++.+ ..+
T Consensus 270 s~~~kf~~El~~q~kL~eL~ks~~ee~~~~---~~el~~~i~~~~kl--------------led~---~~~~--~e~--- 324 (1822)
T KOG4674|consen 270 SSEEKFEKELSTQKKLNELWKSKLEELSHE---VAELQRAIEELEKL--------------LEDA---SERN--KEN--- 324 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH--------------HHHH---HHhh--HHH---
Confidence 7788888888 777877777677777777 77788887743211 1110 0000 000
Q ss_pred chhhhccHHHHHHHhcccCcccccccccccccccCCccccccccchhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002131 743 IESLITSLQTMSALLHEKSSLVASKSQSLHEDVNLSGKLNDQTAGEIMRSELKAETLLTSLLREKLYSKELEVEQLQAEL 822 (961)
Q Consensus 743 ka~l~~sl~TIlslL~~k~NV~~~~~~SG~~~sgglD~v~Y~~~~d~lr~klkses~~~s~LkE~I~~ee~eleqlq~el 822 (961)
+..|...=+|...+.....+... ++.|.+-.- .+-+.- ++..++. ... -.+=+.+
T Consensus 325 ~d~l~e~~~sl~~~~~~~~k~~~-------~le~~l~~a-----n~~~~~-~~~~~~~--------s~~----~a~~s~~ 379 (1822)
T KOG4674|consen 325 TDQLKELEQSLSKLNEKLEKKVS-------RLEGELEDA-----NDSLSA-TGESSMV--------SEK----AALASSL 379 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhh-----hhhHHh-hcccchh--------hhH----HHHHHhh
Confidence 00000000011100000000000 000000000 000000 0001111 000 0000111
Q ss_pred HHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 002131 823 ATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQY 902 (961)
Q Consensus 823 as~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~l 902 (961)
...-...-.+.+....+++++....-.+.++...+.-....+..+.--++++..++.++.+.+..+..+++...++..-|
T Consensus 380 ~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~ 459 (1822)
T KOG4674|consen 380 IRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKL 459 (1822)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111224566777777788888888888888888888888888899999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHHhhhhc
Q 002131 903 SEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITILKDTI 941 (961)
Q Consensus 903 ke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil~D~I 941 (961)
...++.++...+.++..+..+...+....-++..|...+
T Consensus 460 e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el 498 (1822)
T KOG4674|consen 460 EKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLEL 498 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888887776554
No 29
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=0.00021 Score=87.85 Aligned_cols=197 Identities=16% Similarity=0.190 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Q 002131 485 VRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSE--------------LGEKFRA 550 (961)
Q Consensus 485 lreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleE--------------l~ee~qe 550 (961)
++.|+.+..+++.+++..+..+.-....|...+.+++.+...++..+..+...+..+.. ...-+..
T Consensus 296 ~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~ 375 (1174)
T KOG0933|consen 296 VKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEK 375 (1174)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444444444444444444444444444444444444 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHH
Q 002131 551 AEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT-------IAGLRDGFSDQIEKKPALDKYDKHVALLQREQMR 623 (961)
Q Consensus 551 aeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt-------Ie~LrqEL~eEleke~~vee~ek~Ie~lq~Eler 623 (961)
++..+..+..-......+-.-++.+|..++.++.....+ +++++.+| ....++ +....+.-.....++..
T Consensus 376 ~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~el-k~~e~e--~~t~~~~~~~~~~~ld~ 452 (1174)
T KOG0933|consen 376 AEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKEL-KLREGE--LATASAEYVKDIEELDA 452 (1174)
T ss_pred HHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhH--hhhhhHHHHHHHHHHHH
Confidence 333333332222111122233344444444444444444 55566665 444444 33333333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcCCchhhhHhhhhHHHHHHHHHHHhc---cccCCCCC
Q 002131 624 LTGVEMSLRREIESYRVEV---DSLRHENISLLNRLKGNGKESAALTMKLDKELWTRICCLQNQ---GISMLNES 692 (961)
Q Consensus 624 Lt~~eE~LReELEsle~EI---EsLReEl~~L~rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q---~lS~~d~n 692 (961)
++...++++.++.++.-++ +.|++....+......+.++.+ .|.+++.+++-. .+-+||++
T Consensus 453 ~q~eve~l~~~l~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~--------~l~a~~~~~~f~Y~dP~~nfdrs 519 (1174)
T KOG0933|consen 453 LQNEVEKLKKRLQSLGYKIGQEEALKQRRAKLHEDIGRLKDELD--------RLLARLANYEFTYQDPEPNFDRS 519 (1174)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhcccccccCCCCccchHH
Confidence 4444444444444433222 2344444444444443333321 124444444332 67789977
No 30
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=0.0017 Score=79.97 Aligned_cols=227 Identities=18% Similarity=0.255 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGLEK---ELDRRS---SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREA 507 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yLEK---EL~rrq---nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~ 507 (961)
-+.|+-.+++.|+.....+-..-++ +++... .++...|..+++....|++....+......+-...+.++=++.
T Consensus 231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k 310 (1200)
T KOG0964|consen 231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIK 310 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 5677888888888776665444322 222222 4455555555555555555555555554444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 002131 508 ESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEM-------------------- 567 (961)
Q Consensus 508 El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eElee-------------------- 567 (961)
.+.+.|+.-.++-......+.++..++.+.+.++.++.-+|+...++-...+..+..+++
T Consensus 311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~e 390 (1200)
T KOG0964|consen 311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEE 390 (1200)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHH
Confidence 555555555555555555555566666666666665555555554444444333333333
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHH
Q 002131 568 ---------------------ECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTG 626 (961)
Q Consensus 568 ---------------------ei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~ 626 (961)
....++++|+.+.+...+.-..|..+...+ .+.++. +.++......+..+++.|+.
T Consensus 391 RDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si-~e~~~r--~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 391 RDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSI-NETKGR--MEEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-hhhhhH--HHHHHHHHHHHHHHHHHHHH
Confidence 223333333333333333333344444444 344444 45555555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 002131 627 VEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKES 663 (961)
Q Consensus 627 ~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~ 663 (961)
....+=++=..++..|+.+++.+....+.|....+.+
T Consensus 468 ~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~ 504 (1200)
T KOG0964|consen 468 KRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRS 504 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 6666666666666666667777777666666666643
No 31
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.79 E-value=1.2e-05 Score=94.96 Aligned_cols=28 Identities=4% Similarity=0.061 Sum_probs=23.9
Q ss_pred HHHHHHhcChHHHHHHHHHHhhhhHHHH
Q 002131 394 AMIQTIRILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 394 ~~~~~i~~~~edRR~i~EEaaGi~Kyk~ 421 (961)
.....+...|.+|+.+++++.|+-.|+.
T Consensus 140 ~f~~f~~~~~~er~~il~~l~~~~~~~~ 167 (562)
T PHA02562 140 GYVPFMQLSAPARRKLVEDLLDISVLSE 167 (562)
T ss_pred chhhHhcCChHhHHHHHHHHhCCHHHHH
Confidence 3455677899999999999999999877
No 32
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.76 E-value=0.0004 Score=85.60 Aligned_cols=185 Identities=17% Similarity=0.209 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 470 KLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFR 549 (961)
Q Consensus 470 kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~q 549 (961)
....++.-+......+..|+..+..++.||..+..+...+.....++..+++.+......++..++.+..++.....++.
T Consensus 225 ~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~ 304 (775)
T PF10174_consen 225 ETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELE 304 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477788888888888888888888888888888888777778888888888888887788778888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHH
Q 002131 550 AAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEM 629 (961)
Q Consensus 550 eaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE 629 (961)
.+...+...-..+.+.+..+..+.-.+...+.....+...+..|+.++ ++-... +.+....+..++.+..+++++..
T Consensus 305 ~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl-e~k~~~--l~kk~~~~~~~qeE~~~~~~Ei~ 381 (775)
T PF10174_consen 305 ALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL-EEKNSQ--LEKKQAQIEKLQEEKSRLQGEIE 381 (775)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666666666666666666666666666666666677777777 555545 66677777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002131 630 SLRREIESYRVEVDSLRHENISLLNRLK 657 (961)
Q Consensus 630 ~LReELEsle~EIEsLReEl~~L~rRLq 657 (961)
.|+..+...+.+|.-|...+..+...|.
T Consensus 382 ~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 382 DLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776666666554
No 33
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.76 E-value=0.0021 Score=79.63 Aligned_cols=191 Identities=18% Similarity=0.185 Sum_probs=89.9
Q ss_pred hcChHHHHHHHHHHhhhhHHHHHHhh-hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhH--HHHH
Q 002131 400 RILTEEKMSLALEVSGLLQSRIVERA-SAKEELRM--VKADLESRTRRLEREKVELQSGL---EKELDRRSSDW--SFKL 471 (961)
Q Consensus 400 ~~~~edRR~i~EEaaGi~Kyk~aerk-~t~enL~R--i~~ELe~QLepLEkQaekAK~yL---EKEL~rrqnE~--~~kI 471 (961)
|=+|.||..=|-....|---.-++|. .+.+=|.. -+.+|......|+.....-..++ +.+++..--++ .-+-
T Consensus 145 qFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 145 QFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred hhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888666554444433336666 33322222 44455555555555544444444 44444433111 1111
Q ss_pred HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 472 EKYQMEEQRL------------RERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQ 539 (961)
Q Consensus 472 ~~~EsEkk~L------------rERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleq 539 (961)
..+.+.+..+ .............++.++..+.+.+..+.++++.++.++....++...+..++.+...
T Consensus 225 ~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~ 304 (1072)
T KOG0979|consen 225 ERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALA 304 (1072)
T ss_pred HHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHH
Confidence 1112222222 1222223333344444444444445555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 540 NLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 540 eleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
.+.++.+.+..+..++.......+.++++....++.|..+ .+.|..++.++
T Consensus 305 k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~-------~k~i~~~q~el 355 (1072)
T KOG0979|consen 305 KVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKA-------KKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhh
Confidence 5555555555555555555555555555554444444444 44455555554
No 34
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.59 E-value=0.0097 Score=77.47 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 002131 868 QIDLQDSAKELKIMKGVLPKVSEERDMMWEEV 899 (961)
Q Consensus 868 q~dlqe~~keis~~~g~L~~v~eerd~~~ee~ 899 (961)
+...+....++..+...+..+..++..+.++.
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~ 708 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQELEELLEEL 708 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666665544
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.55 E-value=5e-05 Score=81.60 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 437 DLESRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHS 516 (961)
Q Consensus 437 ELe~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~l 516 (961)
.+..+++..+..+..+...++. ...+...++.+...|..|+..|++........+.....++.++.......
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~--------~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~ 76 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKE--------AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADES 76 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444421 23333344445555555555555555555555555555555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 517 EQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDG 596 (961)
Q Consensus 517 eeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqE 596 (961)
+.....+........+.+..++..+.+.......+...++.+...+..+...+..++..+..+...|..++.++....+.
T Consensus 77 er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~ 156 (237)
T PF00261_consen 77 ERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNN 156 (237)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444333333
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.52 E-value=0.00061 Score=80.72 Aligned_cols=230 Identities=15% Similarity=0.186 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
.+...+|..++.++.-+.+++.+.+....+++.....++....++..++.....+++...........+++.+...+.-.
T Consensus 216 ~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~ 295 (546)
T PF07888_consen 216 AEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSA 295 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 44555566666666666555555554444444333333433434444444444444444444455556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHH
Q 002131 545 GEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRL 624 (961)
Q Consensus 545 ~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerL 624 (961)
++.++..+.....+++++.......-.+..++...+-....+....+...-.+ .+. .....+....++...+..
T Consensus 296 qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~l-ke~-----~~q~~qEk~~l~~~~e~~ 369 (546)
T PF07888_consen 296 QEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLEL-KEG-----RSQWAQEKQALQHSAEAD 369 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666655555555544433333333 111 111222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHH---HHHHHHHHhccccCCCCChHHHHHHHH
Q 002131 625 TGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKEL---WTRICCLQNQGISMLNESTQLCSQLLE 701 (961)
Q Consensus 625 t~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El---~~~I~~lq~q~lS~~d~n~~lm~KLL~ 701 (961)
....+.|..+++.++.-+.+-+.+...|...|....+-...-+....++| ++.++-+|.+.=.+..++ ..|++
T Consensus 370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~Ek----QeL~~ 445 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEK----QELLE 445 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 33444444444444444444444555555555444443333444444444 555555555544444555 44555
Q ss_pred HHh
Q 002131 702 FIK 704 (961)
Q Consensus 702 ~IK 704 (961)
.|+
T Consensus 446 yi~ 448 (546)
T PF07888_consen 446 YIE 448 (546)
T ss_pred HHH
Confidence 555
No 37
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.47 E-value=7.1e-05 Score=80.40 Aligned_cols=184 Identities=16% Similarity=0.232 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 470 KLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFR 549 (961)
Q Consensus 470 kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~q 549 (961)
+|..++.+.....+|+.....+...+.......+..+..+.++....+.++..++..+..+....+.....+.+...++.
T Consensus 44 ri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~ 123 (237)
T PF00261_consen 44 RIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLK 123 (237)
T ss_dssp HHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444433333333334444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHH
Q 002131 550 AAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT-------IAGLRDGFSDQIEKKPALDKYDKHVALLQREQM 622 (961)
Q Consensus 550 eaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt-------Ie~LrqEL~eEleke~~vee~ek~Ie~lq~Ele 622 (961)
.+...+..+..........+..++.+|..+.+.++.++.. ...++..+ ..+... +.+.+.+.+.....+.
T Consensus 124 ~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i-~~L~~~--lkeaE~Rae~aE~~v~ 200 (237)
T PF00261_consen 124 VLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKI-RDLEEK--LKEAENRAEFAERRVK 200 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333333 22222223 222222 3333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 623 RLTGVEMSLRREIESYRVEVDSLRHENISLLNRL 656 (961)
Q Consensus 623 rLt~~eE~LReELEsle~EIEsLReEl~~L~rRL 656 (961)
.|......|..+|...+.....+..++......|
T Consensus 201 ~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 201 KLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444333
No 38
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.45 E-value=0.01 Score=71.15 Aligned_cols=294 Identities=15% Similarity=0.133 Sum_probs=139.7
Q ss_pred cccCCCChhHHHHHHhcChHHHHHHHHHHhhhhHHHH--HHhh-----hHHHH-----HHH---------HHHHHHHHHH
Q 002131 385 LHDTGFDVPAMIQTIRILTEEKMSLALEVSGLLQSRI--VERA-----SAKEE-----LRM---------VKADLESRTR 443 (961)
Q Consensus 385 ~~~~~~~~~~~~~~i~~~~edRR~i~EEaaGi~Kyk~--aerk-----~t~en-----L~R---------i~~ELe~QLe 443 (961)
..-.....++..|+...+.-.+..++.+|.---..++ .++. .+..| +.| ...|...++.
T Consensus 333 ~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva 412 (961)
T KOG4673|consen 333 SSATNVSDSDDVQLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVA 412 (961)
T ss_pred CCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHH
Confidence 3344455577788888888888888777654222222 1111 22222 222 5556666666
Q ss_pred HHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 444 RLEREKVELQSGL---EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQL 520 (961)
Q Consensus 444 pLEkQaekAK~yL---EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqI 520 (961)
.||+...-+-... .+++.....++-.+|.. .+..-..+-|+.|-..=.+|..++..-..-|..+..++..-+.-.
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~--DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~ 490 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKELAAALLK--DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLE 490 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 6665544332222 33333333344444433 233334455555555555555555444444444444444433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 002131 521 KDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQ 600 (961)
Q Consensus 521 e~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eE 600 (961)
++.... +..++.+...++..+...++.=...++.+.....+...-.+...+++..+..++.....++.-+ .+
T Consensus 491 ~K~ge~-------i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~-d~ 562 (961)
T KOG4673|consen 491 EKKGEL-------ITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATN-DE 562 (961)
T ss_pred HHhhhH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh-hh
Confidence 222222 2222222222222222222222222222333333333333333333333333333322222222 11
Q ss_pred hhcchhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCchhhhHhhhh---
Q 002131 601 IEKKPALDKYDKH--VALLQREQMRLTGVEMSLRREIESYRVEV----DSLRHENISLLNRLKGNGKESAALTMKLD--- 671 (961)
Q Consensus 601 leke~~vee~ek~--Ie~lq~ElerLt~~eE~LReELEsle~EI----EsLReEl~~L~rRLq~~~ne~~~~~~kl~--- 671 (961)
.-++ + ....+ .+..+.+...|.+....||..|...+... +-+|+++..|.+|||...+.+...+.++-
T Consensus 563 a~~D--l-qk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TT 639 (961)
T KOG4673|consen 563 ARSD--L-QKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETT 639 (961)
T ss_pred hhhh--H-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 1111 0 01111 22455555555555666666665554443 45778888889999988888777766653
Q ss_pred HHHHHHHHHHHhc---cccCCCC
Q 002131 672 KELWTRICCLQNQ---GISMLNE 691 (961)
Q Consensus 672 ~El~~~I~~lq~q---~lS~~d~ 691 (961)
+.|-+.|..||.- .-+.|+.
T Consensus 640 rPLlRQIE~lQ~tl~~~~tawer 662 (961)
T KOG4673|consen 640 RPLLRQIEALQETLSKAATAWER 662 (961)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHH
Confidence 7778888888874 5556655
No 39
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00024 Score=85.12 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 495 LQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQK 574 (961)
Q Consensus 495 LqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleK 574 (961)
-++.++--..++.++.+...+-.+-|-.+......+..+++.|...+.++..++...+..+...+.+++.....+.-..-
T Consensus 407 kqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~is 486 (1118)
T KOG1029|consen 407 KQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMIS 486 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHH
Confidence 33444444444444444443333444444444444555555555555555555555554444555555555444444444
Q ss_pred HHHHHHHHHHHHHHH-------HHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 575 SITRLLRTCSEQEKT-------IAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRH 647 (961)
Q Consensus 575 eIa~Lq~~Ik~lEKt-------Ie~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLRe 647 (961)
+|..|+.+|++++.. ...|...+ ...... ...-..++..+..-...-......++.++..+..|+++-.+
T Consensus 487 ei~qlqarikE~q~kl~~l~~Ekq~l~~ql-kq~q~a--~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~ 563 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKLQKLAPEKQELNHQL-KQKQSA--HKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLN 563 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHhhhh--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544 22233333 222211 22223334444444444445566777788888888888888
Q ss_pred HHHHHHHHhhhcCCchhhhHhhhhHHH
Q 002131 648 ENISLLNRLKGNGKESAALTMKLDKEL 674 (961)
Q Consensus 648 El~~L~rRLq~~~ne~~~~~~kl~~El 674 (961)
+++...+.|+++.......+..++..+
T Consensus 564 eidi~n~qlkelk~~~~~q~lake~~y 590 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDVNSQQLAKEELY 590 (1118)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777666665555444
No 40
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.41 E-value=0.012 Score=70.23 Aligned_cols=142 Identities=21% Similarity=0.165 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002131 802 SLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKDESINQLQIDLQDSAKELKIM 881 (961)
Q Consensus 802 s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~~ 881 (961)
..|+..+.+...++++.+.++..+...-......+.+|..+|..++.++........+..+.+..+...|+....+....
T Consensus 305 ~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~A 384 (522)
T PF05701_consen 305 SSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEA 384 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666665556667788899999999888888877777666677888888999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHHhhhhcCC
Q 002131 882 KGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITILKDTIGS 943 (961)
Q Consensus 882 ~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil~D~I~~ 943 (961)
+........++..+.+++.+.+-.+..+...+..+.+.++..+...-.-=.+|..|.+.-..
T Consensus 385 k~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~ 446 (522)
T PF05701_consen 385 KKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESS 446 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999988877777888888776543
No 41
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.34 E-value=0.028 Score=71.31 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=25.2
Q ss_pred HHHHHHhcChHHHHHHHHHHhhhhHHHH
Q 002131 394 AMIQTIRILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 394 ~~~~~i~~~~edRR~i~EEaaGi~Kyk~ 421 (961)
.+-..|-+.|.+|..|+.++.|+-+|..
T Consensus 144 e~~~fl~~~~~er~~il~~l~~l~~~e~ 171 (908)
T COG0419 144 EFDAFLKSKPKERKEILDELFGLEKYEK 171 (908)
T ss_pred hHHHHHhcCcHHHHHHHHHHhCchhHHH
Confidence 5667899999999999999999999776
No 42
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.0011 Score=79.72 Aligned_cols=187 Identities=13% Similarity=0.145 Sum_probs=110.1
Q ss_pred HHHHhhh-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 458 KELDRRS-SDWS-FKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENG 535 (961)
Q Consensus 458 KEL~rrq-nE~~-~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELe 535 (961)
+||+++. .+|+ .++..+.+.+.+-++++=.|..++..|+.|++.+..++.++..++.-.+-.+...+.++
T Consensus 403 ~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~i-------- 474 (1118)
T KOG1029|consen 403 EELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEI-------- 474 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHH--------
Confidence 3555544 6664 56667777777777777778888888888888888777777777666654444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHH
Q 002131 536 DLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVA 615 (961)
Q Consensus 536 eleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie 615 (961)
++.....+....++++++.++++.++.+..+--+-..|.-+++.-+..-.+-.++. .+++.. ....+--..
T Consensus 475 ------e~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~-s~L~aa--~~~ke~irq 545 (1118)
T KOG1029|consen 475 ------EEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRK-SELEAA--RRKKELIRQ 545 (1118)
T ss_pred ------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHH-HHHHHH--HHHHHHHHH
Confidence 44444444444444444444444444444444443334333333332222222222 333333 344444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002131 616 LLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGK 661 (961)
Q Consensus 616 ~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~n 661 (961)
.++..+..|..+.+.-..++...+-++++|++.++.+.-...++=.
T Consensus 546 ~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 546 AIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777788888888888888888877766655543
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.32 E-value=0.023 Score=75.03 Aligned_cols=191 Identities=11% Similarity=0.110 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 466 DWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELG 545 (961)
Q Consensus 466 E~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ 545 (961)
+...+|...+....++.+.+.+|+.+...|+.+.+.+........ ++.....++..+...++.+...+++....+.++.
T Consensus 297 eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeele 375 (1486)
T PRK04863 297 TSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEAD 375 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666666666666666666554444 2334455566666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhc-chhhhhhHHHHHHHHHHHHHH
Q 002131 546 EKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEK-KPALDKYDKHVALLQREQMRL 624 (961)
Q Consensus 546 ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eElek-e~~vee~ek~Ie~lq~ElerL 624 (961)
+++...+.++..+..++..++.++.++...+..++.....+++.+..++.-- .-.+- .-+.++++..++.+...+..+
T Consensus 376 eeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~-~~~~~~~~SdEeLe~~LenF~aklee~ 454 (1486)
T PRK04863 376 EQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK-QLCGLPDLTADNAEDWLEEFQAKEQEA 454 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666665555432 22220 113556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 625 TGVEMSLRREIESYRVEVDSLRHENISLLNRLKG 658 (961)
Q Consensus 625 t~~eE~LReELEsle~EIEsLReEl~~L~rRLq~ 658 (961)
+.....++.++...+..++.+++....+......
T Consensus 455 e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 455 TEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6666666666666666666666666555544443
No 44
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.32 E-value=0.023 Score=70.87 Aligned_cols=301 Identities=16% Similarity=0.114 Sum_probs=168.0
Q ss_pred ccccCCCCCCCCCC----CccchhhHHHHHHhHHhhhhhhcchhhhhhhcccccCCCChhHHHHHHhcChHHHHHHHHHH
Q 002131 338 NYFYGDHCEGLNSI----ETEEDEDVELRRRSKEAEGRVMVLSEELEHETFLHDTGFDVPAMIQTIRILTEEKMSLALEV 413 (961)
Q Consensus 338 ~~~~~~~~~~~~~~----~~~~~~d~~l~~~~ke~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~edRR~i~EEa 413 (961)
|+|.|.|-.|=++. -..=.--++|+-|||.|.+=|.----+-+=+=-+.+++=++...-..++
T Consensus 45 NmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~~g~IEI~l~~~~e~~~ItR~I~~------------- 111 (1072)
T KOG0979|consen 45 NMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGEDEGYIEIELKDKDETLTITRLISR------------- 111 (1072)
T ss_pred eeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCccceEEEEEecCCCceEEEEEEee-------------
Confidence 66666665542221 1111234789999999988665432222222223333222111111111
Q ss_pred hhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHhhh--hhHHHHHHHHHHH-HHHHHHHHH
Q 002131 414 SGLLQSRIVERASAKEELRMVKADLESRTRRLEREKVELQSGL--E--KELDRRS--SDWSFKLEKYQME-EQRLRERVR 486 (961)
Q Consensus 414 aGi~Kyk~aerk~t~enL~Ri~~ELe~QLepLEkQaekAK~yL--E--KEL~rrq--nE~~~kI~~~EsE-kk~LrERlr 486 (961)
++-++|.+-...-|+-.+.-++ +.+-.|+..+=++| + .|..+.+ +=+...++..-.+ .--....|.
T Consensus 112 ~k~S~y~iN~~a~t~s~i~elv-------~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~ 184 (1072)
T KOG0979|consen 112 DKESKYFINDSATTKSEIEELV-------AHFNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELM 184 (1072)
T ss_pred cCCcceeeccchhhhHHHHHHH-------HHHhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2234555522222332233333 34444444445566 2 2555555 2233333333333 555667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 487 ELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDL-----RQNLSELGEKFRAAEADLYCIKRN 561 (961)
Q Consensus 487 eLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeel-----eqeleEl~ee~qeaeEeld~iR~e 561 (961)
.|.+...+|.+-++..+++++.+.+.++.++..++.+..... ....|+-+ --.+.....+|..++..++.++.+
T Consensus 185 ~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~-~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~ 263 (1072)
T KOG0979|consen 185 DLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERER-KKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKE 263 (1072)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888877777776665432 23333333 224566778888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 562 FEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVE 641 (961)
Q Consensus 562 ~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~E 641 (961)
+..+...+..++..+..|+..+.++...+.+....+ .+.+.+ +.++-..+.++..+++.+....+.++..-+.....
T Consensus 264 ~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~-~e~~~k--~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~ 340 (1072)
T KOG0979|consen 264 LRKLEKEIKPIEDKKEELESEKKETRSKISQKQREL-NEALAK--VQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKR 340 (1072)
T ss_pred HHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888888888888877777776 444333 33333333444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHhhhcCCc
Q 002131 642 VDSLRHENISLLNRLKGNGKE 662 (961)
Q Consensus 642 IEsLReEl~~L~rRLq~~~ne 662 (961)
|...+..+..+...|+...+-
T Consensus 341 i~~~~k~i~~~q~el~~~~~~ 361 (1072)
T KOG0979|consen 341 IEKAKKMILDAQAELQETEDP 361 (1072)
T ss_pred HHHHHHHHHHHHhhhhhcCCc
Confidence 444444444555555544443
No 45
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.31 E-value=0.024 Score=68.95 Aligned_cols=117 Identities=17% Similarity=0.326 Sum_probs=62.6
Q ss_pred hhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHH--------HHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 002131 825 AVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKDESINQLQ--------IDLQDSAKELKIMKGVLPKVSEERDMMW 896 (961)
Q Consensus 825 ~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D~I~~lq--------~dlqe~~keis~~~g~L~~v~eerd~~~ 896 (961)
..+.-...++|++..++.+.-+...+..++.|+. ++..|. ..|....+=+..+++...++...+
T Consensus 408 ~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s----~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qr---- 479 (1265)
T KOG0976|consen 408 GKKDHEAAKNELQEALEKLDLMGTHLSMADYQLS----NFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQR---- 479 (1265)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhc----
Confidence 3344456678888888888777766666665532 222221 122222333333333333332222
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-----hhhchhHHhhhhcCCCCCccccCchhh
Q 002131 897 EEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLL-----LKEGQITILKDTIGSKPFDLLASPDNM 955 (961)
Q Consensus 897 ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~-----~kEgqIsil~D~I~~~~~~~~~sp~~~ 955 (961)
..-.++..+|.+...-+++++-++|.|. .++..-.--...-++-|-| .||+..
T Consensus 480 ----KVeqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA~r~ag~h~ad--ssqrds 537 (1265)
T KOG0976|consen 480 ----KVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAHRKAGDHPAD--SSQRDS 537 (1265)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC--CCcccH
Confidence 2334677778888888888888888865 2332222233334556666 577654
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.27 E-value=0.002 Score=71.26 Aligned_cols=242 Identities=22% Similarity=0.297 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 438 LESRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSE 517 (961)
Q Consensus 438 Le~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~le 517 (961)
+-.++..|+.+-..+...+..--.........--..|+.++.-++..|..+...+..+.-++..+...+.++..+.....
T Consensus 16 YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~ 95 (312)
T PF00038_consen 16 YIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL 95 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 33445555555444443332222221233333456788888899999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH
Q 002131 518 QQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSI----------------TRLLR 581 (961)
Q Consensus 518 eqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeI----------------a~Lq~ 581 (961)
.....+..++..++.+++........+..+...+++++..++..+.+.-.. +...| +..-.
T Consensus 96 ~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~---L~~~~~~~~~~e~~~~~~~dL~~~L~ 172 (312)
T PF00038_consen 96 AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEE---LREQIQSSVTVEVDQFRSSDLSAALR 172 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSTT----------------HHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhh---hhhccccccceeecccccccchhhhh
Confidence 888888888888888888888888888888888888888877766643222 22122 11111
Q ss_pred HH-HHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002131 582 TC-SEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNG 660 (961)
Q Consensus 582 ~I-k~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ 660 (961)
.| ...+..+..-++++..-+... +..+..........+..+......++..|.++..++.+|+..+..|.+++.++.
T Consensus 173 eiR~~ye~~~~~~~~e~e~~y~~k--~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 173 EIRAQYEEIAQKNREELEEWYQSK--LEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhhhhhcccc--cccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 11 111222333333343333333 555555566666667777777777777777777777777777777777777777
Q ss_pred CchhhhHhhhhHHH---HHHHHHHHhc
Q 002131 661 KESAALTMKLDKEL---WTRICCLQNQ 684 (961)
Q Consensus 661 ne~~~~~~kl~~El---~~~I~~lq~q 684 (961)
..........+..| ...|..++.+
T Consensus 251 ~~~~~~~~~~~~~i~~le~el~~l~~~ 277 (312)
T PF00038_consen 251 QRLDEEREEYQAEIAELEEELAELREE 277 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 66555555444444 4555555443
No 47
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.26 E-value=0.027 Score=67.93 Aligned_cols=127 Identities=17% Similarity=0.310 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
.++...|...+.+++.+.+.|..|-+....-..++..+..+-.++...+..-.... -..++.+.+ .+.++
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~---G~a~~~Le~-------~L~~i 173 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSY---GPAIEELEK-------QLENI 173 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---chhHHHHHH-------HHHHH
Confidence 44555555555555555555555555555555555555555544444433332222 222222222 22222
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHhhh
Q 002131 545 GEKFRAAEA-----DLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT----IAGLRDGFSDQIE 602 (961)
Q Consensus 545 ~ee~qeaeE-----eld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt----Ie~LrqEL~eEle 602 (961)
...|....+ ....+++-+..++..+..++..|..+=.-+..++++ +..|+.++ .+|.
T Consensus 174 e~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy-~~m~ 239 (560)
T PF06160_consen 174 EEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGY-REME 239 (560)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH-HHHH
Confidence 222322222 122345555555555555555555555555555555 56666665 4443
No 48
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.24 E-value=0.00047 Score=81.63 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=5.3
Q ss_pred ccccccccch
Q 002131 735 KVQGFKRKIE 744 (961)
Q Consensus 735 K~q~f~~Gka 744 (961)
.+..+++|..
T Consensus 465 ~~~~lS~Ge~ 474 (562)
T PHA02562 465 SYASFSQGEK 474 (562)
T ss_pred ChhhcChhHH
Confidence 3444566655
No 49
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=0.029 Score=70.36 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHH
Q 002131 565 KEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVAL 616 (961)
Q Consensus 565 leeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~ 616 (961)
....+..+.+.|...+..-.++..+|+.++.++ ..+.+. ....++.++.
T Consensus 301 ~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l-~av~~~--~~~fekei~~ 349 (1141)
T KOG0018|consen 301 LKKRLEEIEKDIETAKKDYRALKETIERLEKEL-KAVEGA--KEEFEKEIEE 349 (1141)
T ss_pred chhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHH-HHHHHH--HHHHHHHHHH
Confidence 333444444555555555555555555555555 444444 4444444443
No 50
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.23 E-value=0.0031 Score=74.87 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 002131 620 EQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESA 664 (961)
Q Consensus 620 ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~ 664 (961)
....+.+.+..|+...+..+.+|..|..++..+..-||+-..+..
T Consensus 351 ~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~q 395 (546)
T PF07888_consen 351 GRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQ 395 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555666666666666666666666444433
No 51
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.20 E-value=0.0017 Score=79.22 Aligned_cols=168 Identities=20% Similarity=0.277 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 436 ADLESRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITH 515 (961)
Q Consensus 436 ~ELe~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~ 515 (961)
.+|+.+|..-..++.+|....|+....+ .|+-..|+-.--++.+.+||...|+.....++..++.++-.+.-++.+++.
T Consensus 279 a~Lqrel~raR~e~keaqe~ke~~k~em-ad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 279 ADLQRELKRARKEAKEAQEAKERYKEEM-ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444433222222 344455566666777777776655555555555554444444444444332
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 516 SEQQL-KDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLR 594 (961)
Q Consensus 516 leeqI-e~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~Lr 594 (961)
-=--. ..-.-++..++.....+++.+..+++-....+.+...+.++++.+..++.++...-++|.++++..+-+|.+|.
T Consensus 358 kG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk 437 (1243)
T KOG0971|consen 358 KGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK 437 (1243)
T ss_pred cCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 20000 11233455666666777777777777777777777777777777777777777777788888888888888887
Q ss_pred hhhhHhhhcc
Q 002131 595 DGFSDQIEKK 604 (961)
Q Consensus 595 qEL~eEleke 604 (961)
+.+...+|-+
T Consensus 438 EQVDAAlGAE 447 (1243)
T KOG0971|consen 438 EQVDAALGAE 447 (1243)
T ss_pred HHHHHhhcHH
Confidence 7776666644
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.16 E-value=0.003 Score=74.99 Aligned_cols=144 Identities=22% Similarity=0.241 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 437 DLESRTRRLEREKVELQSGL-----------EKELDRRS---SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTF 502 (961)
Q Consensus 437 ELe~QLepLEkQaekAK~yL-----------EKEL~rrq---nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~l 502 (961)
-|+.|-..|+.++..++... |.||.... .+.-....+++.++..|++.+..|..+..+..+.....
T Consensus 60 ~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~ 139 (546)
T KOG0977|consen 60 FLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGA 139 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555544433 44554444 44455566666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 503 NEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLL 580 (961)
Q Consensus 503 eeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq 580 (961)
.+++.+....+..++.++.-++.....+.+++..+..+...+...+..++..+++-.--..+.++.+..|..+|+-++
T Consensus 140 re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 140 REKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666665555554444444445555444444443
No 53
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.15 E-value=0.0016 Score=77.23 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGLEKELDRRS------SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREA 507 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yLEKEL~rrq------nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~ 507 (961)
-.++++..+.+|..+..+++.-+++....+. .+|...|...+.+...+.-+++.|++....|+.+...+...+.
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 5566777788888888888777744333333 6677777777888777777777777777777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Q 002131 508 ESRSMITHSEQQLKDLTRRAEQYTEENGDLR----QNLSELGEKFR-------------AAEADLYCIKRNFEEKEMECK 570 (961)
Q Consensus 508 El~~kIe~leeqIe~ltselEeleeELeele----qeleEl~ee~q-------------eaeEeld~iR~e~eEleeei~ 570 (961)
.+...++--..-.-.+...+..+.++|..+. .++.+.+..+. ++...+..||.+|+..-....
T Consensus 187 ~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR 266 (546)
T KOG0977|consen 187 RARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNR 266 (546)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6665444333333333344444444444433 22222222221 122233333333332222111
Q ss_pred H-----HHHHHHHHH--------------HHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002131 571 D-----LQKSITRLL--------------RTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSL 631 (961)
Q Consensus 571 e-----leKeIa~Lq--------------~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~L 631 (961)
+ .++.|..++ ..+.....+|.+|+..+ .++++. -.-+++.|++++-.+..- ...-
T Consensus 267 ~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~kl-selE~~--n~~L~~~I~dL~~ql~e~---~r~~ 340 (546)
T KOG0977|consen 267 KDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKL-SELESR--NSALEKRIEDLEYQLDED---QRSF 340 (546)
T ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhh-cccccc--ChhHHHHHHHHHhhhhhh---hhhh
Confidence 1 223333333 22222222255555555 444444 444555555555444333 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002131 632 RREIESYRVEVDSLRHENISLLNRLKGNGK 661 (961)
Q Consensus 632 ReELEsle~EIEsLReEl~~L~rRLq~~~n 661 (961)
+..|...+.++..+|++...+...|+.+=+
T Consensus 341 e~~L~~kd~~i~~mReec~~l~~Elq~LlD 370 (546)
T KOG0977|consen 341 EQALNDKDAEIAKMREECQQLSVELQKLLD 370 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666666666666666666666544
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.14 E-value=0.046 Score=66.04 Aligned_cols=112 Identities=16% Similarity=0.241 Sum_probs=55.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002131 837 QNALDNLSCVTHKLKDLELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVL 916 (961)
Q Consensus 837 q~l~dels~~~~k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~l 916 (961)
+.+..++..+......+...+.......+.++..+++..+++..+.....++.+.+..+...-..++.++..++..+..+
T Consensus 351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i 430 (569)
T PRK04778 351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI 430 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555444444444444444444444444444444444444444444
Q ss_pred HHHHHHH---------HHHHhhhhchhHHhhhhcCCCCCcc
Q 002131 917 KKKIEVL---------DEDLLLKEGQITILKDTIGSKPFDL 948 (961)
Q Consensus 917 kk~ie~L---------eedi~~kEgqIsil~D~I~~~~~~~ 948 (961)
+..++.. .......+..|..+...+...|.|+
T Consensus 431 kr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm 471 (569)
T PRK04778 431 KRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPINM 471 (569)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 4333321 2223345778888888888877765
No 55
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.13 E-value=0.051 Score=66.98 Aligned_cols=137 Identities=20% Similarity=0.254 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHH-------h----hhh----------
Q 002131 801 TSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLEL-------Q----MLK---------- 859 (961)
Q Consensus 801 ~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~-------q----~~K---------- 859 (961)
++.|+.+|.+-+.|-..|-..+..+-.+.+..+.++...+..+..++.++..|.. + ..+
T Consensus 267 iqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ 346 (717)
T PF09730_consen 267 IQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDY 346 (717)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccch
Confidence 5566666666666666665555555444444444444444444444422222221 0 000
Q ss_pred -hhh--hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHH
Q 002131 860 -KDE--SINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITI 936 (961)
Q Consensus 860 -~~D--~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsi 936 (961)
.+| .+..++..++....++..+...|+.+..+....... ++.....+..++..++.++..++........+|..
T Consensus 347 ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~---~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~ 423 (717)
T PF09730_consen 347 YEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEER---YKQEKDRLESEVQNLKEKLMSLEKSSREDQERISE 423 (717)
T ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 001 134455566666666666666666665555555442 22233344445555555555554433333334444
Q ss_pred hhhh
Q 002131 937 LKDT 940 (961)
Q Consensus 937 l~D~ 940 (961)
|+++
T Consensus 424 LE~E 427 (717)
T PF09730_consen 424 LEKE 427 (717)
T ss_pred HHHH
Confidence 4443
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.11 E-value=0.0019 Score=79.22 Aligned_cols=73 Identities=12% Similarity=0.270 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDL 537 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeel 537 (961)
.|+..+|..+.+....+...|..|..++..|+..+..+......=+..+..++.++..+......++.+|.+.
T Consensus 442 ~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 442 QELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEE 514 (697)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555555555555555555555555555555444444444443
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.11 E-value=0.0043 Score=68.60 Aligned_cols=111 Identities=20% Similarity=0.321 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 475 QMEEQRLRERVRELAEQNVSLQREVSTFNERE--------AESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGE 546 (961)
Q Consensus 475 EsEkk~LrERlreLeEknvsLqrEIe~leeKi--------~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~e 546 (961)
....-..=++|++|+.+|..|..+|..+..+. ......|..+..+|..+..+...+.-++.++...+.+++.
T Consensus 10 NdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~ 89 (312)
T PF00038_consen 10 NDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRR 89 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHH
Confidence 33334444556666666666666665555551 1233444444455555555555555555555555555544
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 547 KFRAAEADLYCI-------KRNFEEKEMECKDLQKSITRLLRTCSE 585 (961)
Q Consensus 547 e~qeaeEeld~i-------R~e~eEleeei~eleKeIa~Lq~~Ik~ 585 (961)
++.........+ +..+...--...+++..|..|+..+.-
T Consensus 90 k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 90 KYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 444444444444 444433333334444444444444433
No 58
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=0.06 Score=64.11 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 518 QQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQ 586 (961)
Q Consensus 518 eqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~l 586 (961)
..++.+......++.++..++..+.+....-+.+...+..++++.++++.++..+.+++..|+.+|..+
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555666666677777777777777778877888888888888888888888888887777654
No 59
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.05 E-value=0.026 Score=67.59 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002131 466 DWSFKLEKYQMEEQRLRERV 485 (961)
Q Consensus 466 E~~~kI~~~EsEkk~LrERl 485 (961)
.|...+...+.+...|++.+
T Consensus 215 ~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 215 EWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443333
No 60
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.96 E-value=0.078 Score=66.80 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 428 KEELRMVKADLESRTRRLEREKVELQSGL-----EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTF 502 (961)
Q Consensus 428 ~enL~Ri~~ELe~QLepLEkQaekAK~yL-----EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~l 502 (961)
=.+..+|+.+|..+...|...+..++..= +..+..+.. -...|+..-+.-..-.+-+..|.....+|.++|-..
T Consensus 1166 F~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~-kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~ 1244 (1758)
T KOG0994|consen 1166 FQTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEE-KLEEIRAILSAPSVSAEDIAQLASATESLRRQLQAL 1244 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34566699999999999998888877654 333333331 112222222222333556667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 002131 503 NEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEA-----DLYCIKRNFE 563 (961)
Q Consensus 503 eeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeE-----eld~iR~e~e 563 (961)
.+.+.+++..+..+..++.-...+++.++.+...+...+.|+.+++..+++ .++-++.-++
T Consensus 1245 ~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~ 1310 (1758)
T KOG0994|consen 1245 TEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYE 1310 (1758)
T ss_pred HhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Confidence 777777777777777776666677777777777777777777766666543 3444444444
No 61
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.96 E-value=0.11 Score=63.54 Aligned_cols=61 Identities=8% Similarity=0.074 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 476 MEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGD 536 (961)
Q Consensus 476 sEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELee 536 (961)
.+..+++.-+..|++....++.+|..++.+...++...+-+..-+..+++++.+.+-+|++
T Consensus 85 qetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~ 145 (1265)
T KOG0976|consen 85 QETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIEN 145 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555444444444444444444444444433333333333
No 62
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.034 Score=66.14 Aligned_cols=80 Identities=16% Similarity=0.009 Sum_probs=63.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHHHHHHHHHHhccc
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKELWTRICCLQNQGI 686 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q~l 686 (961)
+.++...+.+.++++..|+....++..-+++....+..+..++..+..+.+-...+......+++.|+......+++..|
T Consensus 427 ~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l 506 (581)
T KOG0995|consen 427 LDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKL 506 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888988888888888888888888888888888888888888888888888888666666666433
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.87 E-value=0.18 Score=63.16 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
+.+...|..++..+..|+.++.+=.+++..+..+|..++..+..+..++...-.. ...+.--..+++.+.+..+--
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~e----a~ra~~yrdeldalre~aer~ 248 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDE----AHRADRYRDELDALREQAERP 248 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhhHHHHHHHhhhcC
Confidence 3344444555555555555544444444444444444444444443333332111 111111123333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHH
Q 002131 545 GEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRL 624 (961)
Q Consensus 545 ~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerL 624 (961)
...|.++-.+.+..+..+++++++...+..+-.-|+.++..+..+-++ ..+++. +-.+.+.+..|+++....
T Consensus 249 d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~------~tlese--iiqlkqkl~dm~~erdtd 320 (1195)
T KOG4643|consen 249 DTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG------ATLESE--IIQLKQKLDDMRSERDTD 320 (1195)
T ss_pred CCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc------CChHHH--HHHHHHHHHHHHHhhhhH
Confidence 344555555666677777777777666655555555555444433222 122223 334455556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 625 TGVEMSLRREIESYRVEVDSLRHE 648 (961)
Q Consensus 625 t~~eE~LReELEsle~EIEsLReE 648 (961)
+-..++|..|...+..+.+.|.-.
T Consensus 321 r~kteeL~eEnstLq~q~eqL~~~ 344 (1195)
T KOG4643|consen 321 RHKTEELHEENSTLQVQKEQLDGQ 344 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555555555555555555544433
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.86 E-value=4.4e-06 Score=102.43 Aligned_cols=133 Identities=21% Similarity=0.238 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHH------HHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 002131 804 LREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVT------HKLKDLELQMLKKDESINQLQIDLQDSAKE 877 (961)
Q Consensus 804 LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~------~k~k~LE~q~~K~~D~I~~lq~dlqe~~ke 877 (961)
++..+......+.+|+++..-+.+-.+-+|.-++....+..... +++..++.-+....+....++..+++...+
T Consensus 390 l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~ 469 (722)
T PF05557_consen 390 LEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEE 469 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556666666666555666665555555544332 233333332222222333444456666666
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHH
Q 002131 878 LKIMKGVLPKVSEERDMMWEEVK-------QYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITI 936 (961)
Q Consensus 878 is~~~g~L~~v~eerd~~~ee~k-------~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsi 936 (961)
+..++.....+..++..+.+... .+.+++..++.++..|...+..|++.+...+++|..
T Consensus 470 l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 470 LSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp ------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555555544433322 245566667777777777777777777777777765
No 65
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.83 E-value=3.7e-06 Score=104.87 Aligned_cols=110 Identities=28% Similarity=0.316 Sum_probs=0.0
Q ss_pred CccchhhHHHHHHhHHhhhhhhcchhhhhhhcccccCCCChhHHHHHHhcChHHHHHHHHHHhhhhHHHH----------
Q 002131 352 ETEEDEDVELRRRSKEAEGRVMVLSEELEHETFLHDTGFDVPAMIQTIRILTEEKMSLALEVSGLLQSRI---------- 421 (961)
Q Consensus 352 ~~~~~~d~~l~~~~ke~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~edRR~i~EEaaGi~Kyk~---------- 421 (961)
..|...-..|.+..||++.+|--+-++++.+.-++.+-= ---..+..--++=+.-++|+.|-+...+
T Consensus 28 e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kae---k~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El 104 (859)
T PF01576_consen 28 EDEQALRAQLQKKIKELQARIEELEEELESERQARAKAE---KQRRDLSEELEELKERLEEAGGATQAQIELNKKREAEL 104 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHH
Confidence 345666677888999999999999999998887766421 1111122222344455677777655443
Q ss_pred -HHhh----------hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhh
Q 002131 422 -VERA----------SAKEELRM----VKADLESRTRRLEREKVELQSGL---EKELDRRS 464 (961)
Q Consensus 422 -aerk----------~t~enL~R----i~~ELe~QLepLEkQaekAK~yL---EKEL~rrq 464 (961)
..|+ .+-..|.+ .+.+|..+++.|.+...++.... +.+++..+
T Consensus 105 ~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~ 165 (859)
T PF01576_consen 105 AKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQ 165 (859)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 1111 23334443 66777777777666554443332 55555444
No 66
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.78 E-value=0.025 Score=70.88 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=18.6
Q ss_pred HHHHHHhccccCCCCChHHHHHHHHHHhccc
Q 002131 677 RICCLQNQGISMLNESTQLCSQLLEFIKGKA 707 (961)
Q Consensus 677 ~I~~lq~q~lS~~d~n~~lm~KLL~~IK~k~ 707 (961)
.+.+++. -|..++.. |..+|+.|+.+.
T Consensus 1725 ~L~~~~a-eL~~Le~r---~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1725 ALEDKAA-ELAGLEKR---VESVLDHINERV 1751 (1758)
T ss_pred HHHHHHH-HhhhHHHH---HHHHHHHHhhhh
Confidence 3334443 67778888 899999998544
No 67
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.77 E-value=5.3e-06 Score=103.45 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002131 801 TSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKDESINQLQIDLQDSAKELKI 880 (961)
Q Consensus 801 ~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~ 880 (961)
...+...+.....+++.++..+..+.|.+..+..++..+.+++..++.....+-....+-...|..++.++.+...++..
T Consensus 604 ~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~ 683 (859)
T PF01576_consen 604 LAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEA 683 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888888888888888899888888888887555555444444444677777777777777666
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002131 881 MKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEV 922 (961)
Q Consensus 881 ~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~ 922 (961)
...-+.......+.|..+...-...+..+...-..|...+..
T Consensus 684 ~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~ke 725 (859)
T PF01576_consen 684 AEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKE 725 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666555554444444333333333333
No 68
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.75 E-value=0.28 Score=61.66 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhH
Q 002131 619 REQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDK 672 (961)
Q Consensus 619 ~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~ 672 (961)
.+++.+.-..-.|..+=..+..+++.|.++++.+..+++++++.....+..+++
T Consensus 394 ss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ek 447 (1195)
T KOG4643|consen 394 SSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEK 447 (1195)
T ss_pred hhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777777777777888888888888888888887776666665553
No 69
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.73 E-value=0.16 Score=64.93 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002131 519 QLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRD 595 (961)
Q Consensus 519 qIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~Lrq 595 (961)
++..+.+....+.+.+..++.....+.......+...+..+...........++..+|..|+..+.+...++...+.
T Consensus 575 ~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 575 QIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 33333333335555555566666666666666666666666677777777777777777777777777777555554
No 70
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.71 E-value=0.016 Score=61.24 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGL---EKELDRRS---SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREA 507 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yL---EKEL~rrq---nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~ 507 (961)
.+.++...+..|..+-.-++.-. ++.|+.+. +++-.-|....+|+..|+++++.+.+++..+.+.+-.....+.
T Consensus 20 ~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 20 ELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666655555544 88888886 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 508 ESRSMITHSEQQLK-DLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQ 586 (961)
Q Consensus 508 El~~kIe~leeqIe-~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~l 586 (961)
.+.+.+.++..-++ .--.+.+++...|..+...+.+.......+...++-. -.....++....+.+..++..+..+
T Consensus 100 k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~---~k~~~rql~~e~kK~~~~~~~~~~l 176 (194)
T PF15619_consen 100 KTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELE---NKSFRRQLASEKKKHKEAQEEVKSL 176 (194)
T ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888866544 2222345555555555555555555555544333222 2222233333333444444444444
Q ss_pred HHHHHHHhhhh
Q 002131 587 EKTIAGLRDGF 597 (961)
Q Consensus 587 EKtIe~LrqEL 597 (961)
..+|..|.+.|
T Consensus 177 ~~ei~~L~~kl 187 (194)
T PF15619_consen 177 QEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 71
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.71 E-value=0.074 Score=64.31 Aligned_cols=181 Identities=17% Similarity=0.245 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 474 YQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEA 553 (961)
Q Consensus 474 ~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeE 553 (961)
.+.+++.+++++.........+ ++...+.++..+...|+.+-..++........+......+...+..+.+....+..
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~ 331 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE 331 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666655555554 67777788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002131 554 DLYCIKRNFE---EKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMS 630 (961)
Q Consensus 554 eld~iR~e~e---Eleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~ 630 (961)
+++.++..|. ........+.++|..+...+......+......+ +++... +.++.++++.+..+...+......
T Consensus 332 Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~y-sel~e~--leel~e~leeie~eq~ei~e~l~~ 408 (569)
T PRK04778 332 EIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAY-SELQEE--LEEILKQLEEIEKEQEKLSEMLQG 408 (569)
T ss_pred HHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877743 2233455666666666666666665555555554 444444 555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002131 631 LRREIESYRVEVDSLRHENISLLNRLKGN 659 (961)
Q Consensus 631 LReELEsle~EIEsLReEl~~L~rRLq~~ 659 (961)
|+......+..+..++..+..+.+.+...
T Consensus 409 Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~ 437 (569)
T PRK04778 409 LRKDELEAREKLERYRNKLHEIKRYLEKS 437 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55555555555555555555555544443
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.66 E-value=0.016 Score=71.54 Aligned_cols=152 Identities=22% Similarity=0.336 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHH------HHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 444 RLEREKVELQSGL------EKELDRRS-------SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESR 510 (961)
Q Consensus 444 pLEkQaekAK~yL------EKEL~rrq-------nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~ 510 (961)
.||.++.++|..| |.+|..+- ..+...|..++.+-..|+.++..|.....+=+.-+..+|.++.+-.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 77776662 4566677778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 511 SMITHSEQQLKDLTRRAEQYTEENGDLRQ---------NL-SELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLL 580 (961)
Q Consensus 511 ~kIe~leeqIe~ltselEeleeELeeleq---------el-eEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq 580 (961)
.....++.|+...+.....-++ ..++. +- +-++.+...++.++..++.++..+++.+..++.++..++
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~--~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEE--KAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH--hhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877766654332221 12211 11 224555566666666666666666666666666665555
Q ss_pred HHHHHHHHHHHHHhhhh
Q 002131 581 RTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 581 ~~Ik~lEKtIe~LrqEL 597 (961)
....+.++.++.|-..|
T Consensus 580 ~~~~e~~~~~e~L~~aL 596 (697)
T PF09726_consen 580 KYEKESEKDTEVLMSAL 596 (697)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 54333333344333333
No 73
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.64 E-value=0.041 Score=57.80 Aligned_cols=181 Identities=25% Similarity=0.278 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 002131 466 DWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQY---TEENGDLRQNLS 542 (961)
Q Consensus 466 E~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEel---eeELeeleqele 542 (961)
|+...|..++.-- +.|++++.++++.|..++.--..+...|+.+..++..++..++.. .++++.++..+.
T Consensus 5 dL~~~v~dL~~~n-------~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~ 77 (193)
T PF14662_consen 5 DLLSCVEDLQLNN-------QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAK 77 (193)
T ss_pred HHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444454444443 345555666666666666666666666666666666555555444 677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHH
Q 002131 543 ELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQM 622 (961)
Q Consensus 543 El~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~Ele 622 (961)
.+.++...+-....+..++...+..++..++.+-..+....+.+++.+..|-.+- ..+.+. +=.++.-+-.....+.
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~-~~Lq~Q--l~~~e~l~~~~da~l~ 154 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEK-ATLQRQ--LCEFESLICQRDAILS 154 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhh-HHHHHH--HHHHHHHHHHHHHHHH
Confidence 7777777766666666666666666666666666666666666666655554443 333333 3344444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 623 RLTGVEMSLRREIESYRVEVDSLRHENISLLNRL 656 (961)
Q Consensus 623 rLt~~eE~LReELEsle~EIEsLReEl~~L~rRL 656 (961)
+-+...+.+..-|+.+..-.++||-++..+...|
T Consensus 155 e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 155 ERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666655
No 74
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.64 E-value=0.069 Score=64.12 Aligned_cols=177 Identities=23% Similarity=0.279 Sum_probs=99.1
Q ss_pred HHHHHHhHHhhhhhhcchhhhhhhcccccCCCChhHHHHHHhcC------hHHHHHHHHHHhhhhHHHHHHhhhHHHHHH
Q 002131 359 VELRRRSKEAEGRVMVLSEELEHETFLHDTGFDVPAMIQTIRIL------TEEKMSLALEVSGLLQSRIVERASAKEELR 432 (961)
Q Consensus 359 ~~l~~~~ke~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~edRR~i~EEaaGi~Kyk~aerk~t~enL~ 432 (961)
+-|..|+|.+|.-|+-..+-+.+ +|| -+|.|.....-+ .++++.+.++. +.+.
T Consensus 76 D~LtkRsk~aE~afl~vye~L~e---aPD---P~pll~sa~~~l~k~~~~~~e~~~lk~~l---------------ee~~ 134 (629)
T KOG0963|consen 76 DNLTKRSKFAEAAFLDVYEKLIE---APD---PVPLLASAAELLNKQQKASEENEELKEEL---------------EEVN 134 (629)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhh---CCC---CchHHHHHHHHhhhhhhhhhhHHHHHHHH---------------HHHH
Confidence 35899999999999988776654 233 334433322111 12233222221 1111
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 433 M---VKADLESRTRRLEREKVELQSGL----EKELDRRS----SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVST 501 (961)
Q Consensus 433 R---i~~ELe~QLepLEkQaekAK~yL----EKEL~rrq----nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~ 501 (961)
- -+..++..+.+|+....+...-+ ++...-.+ .+|-.+...+..+..-+.+++..++.+..+++.-+.-
T Consensus 135 ~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~ 214 (629)
T KOG0963|consen 135 NELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIED 214 (629)
T ss_pred HHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 12222333334444444333333 21111222 6677777778888888888888888888777777766
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 502 FNEREAESRSM----ITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLY 556 (961)
Q Consensus 502 leeKi~El~~k----Ie~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld 556 (961)
-..++-++... ..-.-.++.-+..+++..+.-+..++.++..+..++..+.+..+
T Consensus 215 t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 215 TQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 66666666555 44444455555566666666666666666666666666655543
No 75
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.64 E-value=0.37 Score=59.97 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 002131 487 ELAEQNVSLQRE-------VSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAA---EADLY 556 (961)
Q Consensus 487 eLeEknvsLqrE-------Ie~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qea---eEeld 556 (961)
.|+++|.+|++- .+....-+..+...++.....+..+....|.+..+++.++..+.+++++.+.+ ++.+.
T Consensus 372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~ 451 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVE 451 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 355555555443 45555666677777777888888888888888889999999999999888875 77788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHH
Q 002131 557 CIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT-------IAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEM 629 (961)
Q Consensus 557 ~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt-------Ie~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE 629 (961)
++-....+++..+..++..|+.|..--.-+++- -..|+++| ..+.+- +.++.++++..++.+-.+.+-+.
T Consensus 452 qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEl-d~~~g~--~kel~~r~~aaqet~yDrdqTI~ 528 (1243)
T KOG0971|consen 452 QLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREEL-DMAKGA--RKELQKRVEAAQETVYDRDQTIK 528 (1243)
T ss_pred HHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhH--HHHHHHHHHHHHHHHHhHHHHHH
Confidence 887777778888888888877765433333322 45566666 555555 67788888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 630 SLRREIESYRVEVDSLRHENISLLNRLKG 658 (961)
Q Consensus 630 ~LReELEsle~EIEsLReEl~~L~rRLq~ 658 (961)
+-|+-+..++.++..++.+......+.++
T Consensus 529 KfRelva~Lqdqlqe~~dq~~Sseees~q 557 (1243)
T KOG0971|consen 529 KFRELVAHLQDQLQELTDQQESSEEESQQ 557 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHhcC
Confidence 88888888888888888777766666554
No 76
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.61 E-value=0.014 Score=64.84 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=3.8
Q ss_pred HHHHhhhh
Q 002131 590 IAGLRDGF 597 (961)
Q Consensus 590 Ie~LrqEL 597 (961)
|..|+.++
T Consensus 140 I~~L~k~l 147 (294)
T COG1340 140 IKELRKEL 147 (294)
T ss_pred HHHHHHHH
Confidence 44444444
No 77
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.60 E-value=0.087 Score=64.06 Aligned_cols=127 Identities=18% Similarity=0.226 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 502 FNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLR 581 (961)
Q Consensus 502 leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~ 581 (961)
.++.+..+..-++...+.+..+..+++.++..|.+ +|..++........+...+..+++.+...|..+..
T Consensus 392 ~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~----------e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~ 461 (594)
T PF05667_consen 392 AEENIAKLQALVEASEQRLVELAQQWEKHRAPLIE----------EYRRLKEKASNRESESKQKLQEIKELREEIKEIEE 461 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555556666555554433 22333333333334444444555555555555555
Q ss_pred HHHHHHHHHHHHhhhhhHhhhcchh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 582 TCSEQEKTIAGLRDGFSDQIEKKPA-------LDKYDKHVALLQREQMRLTGVEMSLRREIESYR 639 (961)
Q Consensus 582 ~Ik~lEKtIe~LrqEL~eEleke~~-------vee~ek~Ie~lq~ElerLt~~eE~LReELEsle 639 (961)
.+..-+..+..|..++ +.+.++.+ +-++-++|..++.++...-...-.|+.+|..+.
T Consensus 462 e~~~Kee~~~qL~~e~-e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~ 525 (594)
T PF05667_consen 462 EIRQKEELYKQLVKEL-EKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLT 525 (594)
T ss_pred HHHHHHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566665 55554422 223334444444444444444434444433333
No 78
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.60 E-value=0.35 Score=58.81 Aligned_cols=242 Identities=15% Similarity=0.176 Sum_probs=125.1
Q ss_pred HHHHHHhhhhHHHH--------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 002131 408 SLALEVSGLLQSRI--------VERASAKEELRMVKADLESRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQ 479 (961)
Q Consensus 408 ~i~EEaaGi~Kyk~--------aerk~t~enL~Ri~~ELe~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk 479 (961)
.||-||--|-++|+ -+|+ -++| .+||.-...-|..|.=+-++.-.-+|.+|+... |+..+......-=.
T Consensus 82 KL~~EaEKIk~WKv~vesd~~qKErk-Lqen-rk~IEaqrKaIqELQf~NE~lSlKLee~i~en~-dL~k~nnaTR~lCN 158 (786)
T PF05483_consen 82 KLYKEAEKIKKWKVQVESDLKQKERK-LQEN-RKIIEAQRKAIQELQFENEKLSLKLEEEIQENK-DLRKENNATRHLCN 158 (786)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHH-HHHHhhhHHHHHHH
Confidence 58999999999998 1222 1111 124444444444444444444444455554433 35555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 002131 480 RLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEEN--------GDLRQNLSELGEKFRAA 551 (961)
Q Consensus 480 ~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeEL--------eeleqeleEl~ee~qea 551 (961)
.|.+--..++++...|.-+-+....--.++.+.|..+-...+.+.-..+.-+.++ ..+...-.+...++...
T Consensus 159 lLKeT~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~k 238 (786)
T PF05483_consen 159 LLKETCQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDK 238 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 6666666666666666666666666666666666666555555544433333333 22222222223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002131 552 EADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSL 631 (961)
Q Consensus 552 eEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~L 631 (961)
+..+.-+.....++++.+.++.-.|...+..|..++........-| .+...+ .+.+...++..++.+.+.......|
T Consensus 239 Ekqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~L-kes~~~--qe~L~~eL~~~K~slq~~~~tq~~l 315 (786)
T PF05483_consen 239 EKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENL-KESNEE--QEHLLQELEDIKQSLQESESTQKAL 315 (786)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433333334 333333 4455556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 632 RREIESYRVEVDSLRHENISLLNR 655 (961)
Q Consensus 632 ReELEsle~EIEsLReEl~~L~rR 655 (961)
...++.....+..+.++-......
T Consensus 316 e~~lq~~~k~~~qlt~eKe~~~Ee 339 (786)
T PF05483_consen 316 EEDLQQATKTLIQLTEEKEAQMEE 339 (786)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 666666666666665555443333
No 79
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.57 E-value=0.38 Score=58.35 Aligned_cols=45 Identities=22% Similarity=0.135 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHH
Q 002131 803 LLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVT 847 (961)
Q Consensus 803 ~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~ 847 (961)
-+...+.+.+.||-+|+-+++.+-..+++|..|+-+|..+...++
T Consensus 856 h~eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ 900 (961)
T KOG4673|consen 856 HYEALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLR 900 (961)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677789999999999998888777777777666666555444
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.55 E-value=0.006 Score=66.11 Aligned_cols=108 Identities=22% Similarity=0.287 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHH
Q 002131 546 EKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLT 625 (961)
Q Consensus 546 ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt 625 (961)
..+..++.+++.++..+..++.+..++++++..++..|.....++...+..+..... +.....++.++..+.
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~--------~~e~~aL~~E~~~ak 102 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD--------ERELRALNIEIQIAK 102 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------HHHHHHHHHHHHHHH
Confidence 333334444444444444444444444555555555555555555544444411111 223333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002131 626 GVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGK 661 (961)
Q Consensus 626 ~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~n 661 (961)
.....|..+|..+..+++.|..++..+..++..+.+
T Consensus 103 ~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 103 ERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333
No 81
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.54 E-value=0.19 Score=62.41 Aligned_cols=165 Identities=16% Similarity=0.144 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 433 MVKADLESRTRRLEREKVELQSGLEKELDRRS--SDWSFKLEKYQME-------EQRLRERVRELAEQNVSLQREVSTFN 503 (961)
Q Consensus 433 Ri~~ELe~QLepLEkQaekAK~yLEKEL~rrq--nE~~~kI~~~EsE-------kk~LrERlreLeEknvsLqrEIe~le 503 (961)
+++.-++.|+.+|+-+...++...++.+...+ .+-...+...+.+ .+-.....-..+.++..++.-++.+.
T Consensus 358 ~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~ 437 (980)
T KOG0980|consen 358 RRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELR 437 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777888888888877777776644443333 1111222222222 22223333344555666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 504 EREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTC 583 (961)
Q Consensus 504 eKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~I 583 (961)
+.-.++..+...+..|++..+..+..+.+++.++...+.+++.....+....+....-++.++++...+.-+++.++..+
T Consensus 438 ~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~ 517 (980)
T KOG0980|consen 438 QEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTL 517 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777777777778888888888888888888888777777777777777777777777777777776
Q ss_pred HHHHHHHHHHhhhh
Q 002131 584 SEQEKTIAGLRDGF 597 (961)
Q Consensus 584 k~lEKtIe~LrqEL 597 (961)
..+.+.-...-.+|
T Consensus 518 ~~~~qs~~~~~~~l 531 (980)
T KOG0980|consen 518 SNLAQSHNNQLAQL 531 (980)
T ss_pred hhHHHHHHHHHHHH
Confidence 66666644444444
No 82
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.52 E-value=0.16 Score=59.24 Aligned_cols=122 Identities=16% Similarity=0.240 Sum_probs=67.1
Q ss_pred HHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 422 VERASAKEELRM---VKADLESRTRRLEREKVELQSGL------EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQN 492 (961)
Q Consensus 422 aerk~t~enL~R---i~~ELe~QLepLEkQaekAK~yL------EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEkn 492 (961)
+..|.+.+||.- -..++..-+..|++.+..++... +..+.....+|...+.+++.++...++++..|.++.
T Consensus 274 ~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~ 353 (622)
T COG5185 274 ANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNI 353 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444466666655 22344455555666555555554 334444446777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 493 VSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEK 547 (961)
Q Consensus 493 vsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee 547 (961)
..|...|..--=...+ .+.+.+..++++.+++.+.-+.+.+.+.|-+-.-+
T Consensus 354 d~L~~q~~kq~Is~e~----fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~le 404 (622)
T COG5185 354 DELHKQLRKQGISTEQ----FELMNQEREKLTRELDKINIQSDKLTKSVKSRKLE 404 (622)
T ss_pred HHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHH
Confidence 7777666543222222 22333333445555555555555555554443333
No 83
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.52 E-value=0.18 Score=56.27 Aligned_cols=64 Identities=20% Similarity=0.385 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAE 528 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselE 528 (961)
..|..+...+....+-+++.++.|-++...+..+|..+.++..++..++..+-..+..+.....
T Consensus 37 ~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 37 SELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555555555555555555555555555555555555555555554444444444333
No 84
>PRK09039 hypothetical protein; Validated
Probab=97.50 E-value=0.017 Score=65.82 Aligned_cols=46 Identities=9% Similarity=0.135 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 552 EADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 552 eEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
+..+..+..++.+.+....+.+-+|..|+.+|..++..+..++..|
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444455555555444444444444444
No 85
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.48 E-value=0.48 Score=57.43 Aligned_cols=112 Identities=16% Similarity=0.283 Sum_probs=82.8
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002131 837 QNALDNLSCVTHKLKDLELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVL 916 (961)
Q Consensus 837 q~l~dels~~~~k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~l 916 (961)
+.+..++..+.++...+...+....=.-+.+...+++..++|.........+.+.+..+..+-+..++++..++..+..+
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666555555777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHH---------HHHHHhhhhchhHHhhhhcCCCCCcc
Q 002131 917 KKKIEV---------LDEDLLLKEGQITILKDTIGSKPFDL 948 (961)
Q Consensus 917 kk~ie~---------Leedi~~kEgqIsil~D~I~~~~~~~ 948 (961)
+..+++ ....+-.-...|..+.+.+...|+|+
T Consensus 427 kR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm 467 (560)
T PF06160_consen 427 KRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINM 467 (560)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCH
Confidence 887754 34456677888889999999888875
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.48 E-value=0.023 Score=61.69 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 476 MEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHS 516 (961)
Q Consensus 476 sEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~l 516 (961)
+++..++..+-.++.....++.++..++..+.++..++...
T Consensus 38 ~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 38 AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444443333333333333333
No 87
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.48 E-value=0.42 Score=59.48 Aligned_cols=114 Identities=15% Similarity=0.243 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 484 RVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFE 563 (961)
Q Consensus 484 RlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~e 563 (961)
++|....+....+.+.+.....+.++..+..-.+.+.+.+...+..+..++..+.....+...+...++..++.+.++..
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~ 469 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENT 469 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444444444444444455555666666666666666666666666666666666666666666666666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 564 EKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 564 Eleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
++...+.++...-.++.+.-..+.+..+.+++++
T Consensus 470 ~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El 503 (980)
T KOG0980|consen 470 NLNDQLEELQRAAGRAETKTESQAKALESLRQEL 503 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5555555555555554444444444455555554
No 88
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.47 E-value=0.013 Score=58.92 Aligned_cols=121 Identities=14% Similarity=0.242 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 002131 482 RERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQ---NLSELGEKFRAAEADLYCI 558 (961)
Q Consensus 482 rERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleq---eleEl~ee~qeaeEeld~i 558 (961)
.+|+..++.+...+..+...++..|..+..++..++.+++.+...+..+...++.... ..+.+..+.+.++++++..
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333222 2234555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEK 603 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eElek 603 (961)
...+.+....+.++......+.+.+..++.+...++..+ +++..
T Consensus 93 e~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~-eel~~ 136 (143)
T PF12718_consen 93 EKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKY-EELEE 136 (143)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH-HHHHH
Confidence 666666666666666666666666666666655555555 44443
No 89
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.45 E-value=0.61 Score=59.88 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 470 KLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYT 531 (961)
Q Consensus 470 kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEele 531 (961)
.+.-++.+.+...+++...++++..+.+++..++..+..++.+........+.......++.
T Consensus 488 q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le 549 (1317)
T KOG0612|consen 488 QKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLE 549 (1317)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44445566666666666666666666666666666666666555555444443333333333
No 90
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.44 E-value=0.63 Score=57.80 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 485 VRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEE 564 (961)
Q Consensus 485 lreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eE 564 (961)
+.+-+.+...|...|..++..+..+...+......++++......+..+.+.++.+...++++..+++..=..+-..|.+
T Consensus 22 l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyse 101 (717)
T PF09730_consen 22 LQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSE 101 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 44566777778888888887777777777777777777777777777777777777777777777776666666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 565 KEMECKDLQKSITRLLRTCSE---QEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVE 641 (961)
Q Consensus 565 leeei~eleKeIa~Lq~~Ik~---lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~E 641 (961)
++++.-.++|.|..|+...-+ ++.+|..|.+++ +-+... ++.+..-++....+|+..=.-
T Consensus 102 lEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~-~~l~~q----------------lee~~rLk~iae~qleEALes 164 (717)
T PF09730_consen 102 LEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEI-ELLNSQ----------------LEEAARLKEIAEKQLEEALES 164 (717)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766654433 334466666665 434333 333333344444444444444
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002131 642 VDSLRHENISLLNRLKG 658 (961)
Q Consensus 642 IEsLReEl~~L~rRLq~ 658 (961)
+..-|++-..|++.|..
T Consensus 165 l~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 165 LKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555555544
No 91
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=97.43 E-value=0.44 Score=55.83 Aligned_cols=126 Identities=10% Similarity=0.196 Sum_probs=63.9
Q ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 426 SAKEELRM----VKADLESRTRRLEREKVELQSGL--EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREV 499 (961)
Q Consensus 426 ~t~enL~R----i~~ELe~QLepLEkQaekAK~yL--EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEI 499 (961)
...+.|.+ +..-|-++++.|+.+...+-..+ =.+|+..-..+..+-+.++.+...+..-+..++.+..++-.-+
T Consensus 253 ~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l 332 (622)
T COG5185 253 PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKL 332 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHH
Confidence 44445555 55556666666666555544444 1122222244455555556666666666666666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 500 STFNEREAESRSMITHSEQQLKDLTR----------RAEQYTEENGDLRQNLSELGEKFRAA 551 (961)
Q Consensus 500 e~leeKi~El~~kIe~leeqIe~lts----------elEeleeELeeleqeleEl~ee~qea 551 (961)
+.+...+...+..|+.+..++..+.. +++.+..|-+.+-.+++.+..+.+.+
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L 394 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKL 394 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 55555555555555555555544443 34444444444444444444443333
No 92
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.41 E-value=0.096 Score=55.41 Aligned_cols=176 Identities=19% Similarity=0.297 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 466 DWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELG 545 (961)
Q Consensus 466 E~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ 545 (961)
++.+.|..++.+...+....+.|..-..+-...|..++..-.++-.-|....+.+..+...+-..++..-.++..+.+..
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~ 95 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKD 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHH
Q 002131 546 EKFRAAEADLYCIKRNFE-EKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRL 624 (961)
Q Consensus 546 ee~qeaeEeld~iR~e~e-Eleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerL 624 (961)
.+....+..+..++.-.. ..-.+..++...++.+...+...++.|..|+..+ +-..+. ++..+...
T Consensus 96 ~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l-eL~~k~------------~~rql~~e 162 (194)
T PF15619_consen 96 EELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL-ELENKS------------FRRQLASE 162 (194)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhH------------HHHHHHHH
Confidence 444444444444333222 0112245566666666666666666666666665 333222 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 625 TGVEMSLRREIESYRVEVDSLRHENISLLN 654 (961)
Q Consensus 625 t~~eE~LReELEsle~EIEsLReEl~~L~r 654 (961)
......+..++..+..+|..|.+.+....+
T Consensus 163 ~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 163 KKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555555555555555544433
No 93
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.37 Score=59.31 Aligned_cols=124 Identities=18% Similarity=0.202 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 002131 473 KYQMEEQRLRERVRELAEQNVSLQR--EVSTFNEREAESRSMITHSEQ----------QLKDLTRRAEQYTEENGDLRQN 540 (961)
Q Consensus 473 ~~EsEkk~LrERlreLeEknvsLqr--EIe~leeKi~El~~kIe~lee----------qIe~ltselEeleeELeeleqe 540 (961)
+...|...+.+++..++....+-.+ -......++.+...-++.|.. .+...-+.++.++..+..+..+
T Consensus 397 ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~e 476 (698)
T KOG0978|consen 397 KARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQE 476 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666543333322 222222323333333333322 2333335555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 541 LSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDG 596 (961)
Q Consensus 541 leEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqE 596 (961)
+.+....+=.+=.+.......++.+.++...++..|..+......+...|.+++.+
T Consensus 477 l~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq 532 (698)
T KOG0978|consen 477 LREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ 532 (698)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666777777777777777777777777777777776666665
No 94
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.38 E-value=0.27 Score=60.35 Aligned_cols=53 Identities=15% Similarity=0.308 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcc
Q 002131 551 AEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKK 604 (961)
Q Consensus 551 aeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke 604 (961)
+...++.+..++..+..+...+..++..++..+..+++.+..+++.+ ...||.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~-~~~GG~ 259 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKF-RSEGGD 259 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcch
Confidence 34455555666667777777777777888888888888888888888 566666
No 95
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.24 Score=60.87 Aligned_cols=175 Identities=15% Similarity=0.170 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 487 ELAEQNVSLQREVSTFN---EREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFE 563 (961)
Q Consensus 487 eLeEknvsLqrEIe~le---eKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~e 563 (961)
.+++....|+.-+..+. ..+..+-.-++.+..++.++..++.+..+..-.+..+.......|..++++++.+.....
T Consensus 434 ~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~ 513 (698)
T KOG0978|consen 434 QVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQIL 513 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333443333333 444445555666777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 564 EKEMECKDLQKSITRLLRTCSEQEKT-------IAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIE 636 (961)
Q Consensus 564 Eleeei~eleKeIa~Lq~~Ik~lEKt-------Ie~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELE 636 (961)
.+......++..|..++.+...+... +..+.+-+ +...+. ..++.+.++.++.+++..++..+.++..+.
T Consensus 514 ~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~l-e~~kk~--~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~ 590 (698)
T KOG0978|consen 514 TLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSL-EMLKKK--AQEAKQSLEDLQIELEKSEAKLEQIQEQYA 590 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666666555555554 44444445 444444 555555566666666555555555555555
Q ss_pred HHHHHH-------HHHHHHHHHHHHHhhhcCCchh
Q 002131 637 SYRVEV-------DSLRHENISLLNRLKGNGKESA 664 (961)
Q Consensus 637 sle~EI-------EsLReEl~~L~rRLq~~~ne~~ 664 (961)
....++ .-+.+++..+.++|-.++++..
T Consensus 591 e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 591 ELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 544444 4455778888888888888866
No 96
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.37 E-value=0.19 Score=52.90 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEV 642 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EI 642 (961)
+.+...+++.+..-++..+...+.||-++..++..+
T Consensus 153 l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 153 LSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555554443
No 97
>PRK11281 hypothetical protein; Provisional
Probab=97.36 E-value=0.26 Score=63.93 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKD---------------LTRRAEQ 529 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~---------------ltselEe 529 (961)
.++++++...+.+.+..++.+..++.+.+.++...+.....+.++..++..++.++.. ++.+..-
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~ 203 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAL 203 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHH
Confidence 6688888888888888888888888888888888888888888888888888765543 3444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 530 YTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRL 579 (961)
Q Consensus 530 leeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~L 579 (961)
+..++...++++..-....+.++..++..+.++..++..+..++..|+..
T Consensus 204 l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k 253 (1113)
T PRK11281 204 LNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSK 253 (1113)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554444455555555555555555555555555555443
No 98
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.34 E-value=0.14 Score=59.52 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 467 WSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTE 532 (961)
Q Consensus 467 ~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEelee 532 (961)
+...|..++.++..-.++...|+.+..++..+|..++..+.++...+..++..|..+...++.++.
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444444444444444433
No 99
>PRK09039 hypothetical protein; Validated
Probab=97.33 E-value=0.027 Score=64.11 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 493 VSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDL 572 (961)
Q Consensus 493 vsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~el 572 (961)
..+..++..++.+|.++.+.+.--......++..+..++.++..++..-.++...++...+...........+..++...
T Consensus 49 ~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~ 128 (343)
T PRK09039 49 SGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSE 128 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHH
Confidence 33333333333333334444433344444444444444444444444444444444433333334444444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 573 QKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 573 eKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
...++..+.++..+..+|+.|+..+
T Consensus 129 k~~~se~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 129 KQVSARALAQVELLNQQIAALRRQL 153 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555554
No 100
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.31 E-value=0.32 Score=55.74 Aligned_cols=137 Identities=15% Similarity=0.202 Sum_probs=94.6
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 427 AKEELRM---VKADLESRTRRLEREKVELQSGL-EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTF 502 (961)
Q Consensus 427 t~enL~R---i~~ELe~QLepLEkQaekAK~yL-EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~l 502 (961)
...||.- -+..|..+|..+..+...+...+ +-+.++ +-..+.+.+.-.|.+.-+++++.+..++.+.+.++...
T Consensus 65 ~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er--~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~ 142 (499)
T COG4372 65 LNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETER--EAARSELQKARQEREAVRQELAAARQNLAKAQQELARL 142 (499)
T ss_pred hhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554 33445555555555555555444 222222 34556677788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 503 NEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEK 565 (961)
Q Consensus 503 eeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEl 565 (961)
.++-..+..++..+-.+-.++..+...+..+-..++..+.+++.+...+...-..+..+-.++
T Consensus 143 t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~l 205 (499)
T COG4372 143 TKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNL 205 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888888888888877777777777777666666544444444433333
No 101
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.28 E-value=0.19 Score=57.53 Aligned_cols=193 Identities=11% Similarity=0.091 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 468 SFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEK 547 (961)
Q Consensus 468 ~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee 547 (961)
+..+....-.+..++.+|.-.++.+.....|-+.....+..+..+-+-.+++...+...+.+...++..+.+....++.+
T Consensus 73 Vfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr 152 (499)
T COG4372 73 VFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR 152 (499)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555555555555555555666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHH
Q 002131 548 FRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT---IAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRL 624 (961)
Q Consensus 548 ~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt---Ie~LrqEL~eEleke~~vee~ek~Ie~lq~ElerL 624 (961)
+..+-+.+.++..+...+....++|+-..+.++.+..++..+ |+...+++ ..--. .++..++++.+...-...+
T Consensus 153 l~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~l-a~r~~--a~q~r~~ela~r~aa~Qq~ 229 (499)
T COG4372 153 LKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNL-ATRAN--AAQARTEELARRAAAAQQT 229 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 666666666666666667777777777777777777777776 55555555 22222 3666677777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 002131 625 TGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKES 663 (961)
Q Consensus 625 t~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~ 663 (961)
.+...++-..|.+...+|..-.+.+..-.++||++....
T Consensus 230 ~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q 268 (499)
T COG4372 230 AQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQ 268 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777788888765543
No 102
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.27 E-value=0.12 Score=54.40 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 475 QMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEAD 554 (961)
Q Consensus 475 EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEe 554 (961)
+.++.-++.|+..|++...+.+..+..+..++.++...-..-+-.++.++....+..+.++.++..+.+.+-.-..+--.
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK 82 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK 82 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888888888888888888777766666666666666666666666666655555544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 555 LYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDG 596 (961)
Q Consensus 555 ld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqE 596 (961)
++.+-..+--+..++..++....-....|..++-.+..+.+.
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~n 124 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSN 124 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Confidence 444444444444444444444444444444444443333333
No 103
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.23 E-value=0.93 Score=55.33 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
.++...+...+.+...|.-.+.+=+....-+...+.....++..+......-.+-+...+.+.+.+..+|.+.+..+.+.
T Consensus 229 eey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~ 308 (786)
T PF05483_consen 229 EEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQES 308 (786)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444443
Q ss_pred HHHHHHHHHHH
Q 002131 545 GEKFRAAEADL 555 (961)
Q Consensus 545 ~ee~qeaeEel 555 (961)
..-.....+.+
T Consensus 309 ~~tq~~le~~l 319 (786)
T PF05483_consen 309 ESTQKALEEDL 319 (786)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 104
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.21 E-value=0.91 Score=55.76 Aligned_cols=47 Identities=26% Similarity=0.256 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 470 KLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHS 516 (961)
Q Consensus 470 kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~l 516 (961)
.+..+..++..|..++.+..+.+..|..-....+.++.++...+..+
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~ 134 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERL 134 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443334444444444444443
No 105
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.21 E-value=0.19 Score=53.71 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 476 MEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSM----ITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAA 551 (961)
Q Consensus 476 sEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~k----Ie~leeqIe~ltselEeleeELeeleqeleEl~ee~qea 551 (961)
.+...+..+...|...+..+..=+..++.-+..+... .......+..+..+.+.+..+|..++.+..++..+|...
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~ 102 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQ 102 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555555555555555555555544443222 122233344445555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002131 552 EADLYCIKRNFEEKEME 568 (961)
Q Consensus 552 eEeld~iR~e~eEleee 568 (961)
++.+..++.+-+.++..
T Consensus 103 K~vi~~~k~NEE~Lkk~ 119 (207)
T PF05010_consen 103 KEVIEGYKKNEETLKKC 119 (207)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 55555555544444433
No 106
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.20 E-value=0.25 Score=62.74 Aligned_cols=188 Identities=14% Similarity=0.199 Sum_probs=112.4
Q ss_pred HHHHhhhhHHHH-H---Hhh-hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhh--h-hhHHHHHHHH
Q 002131 410 ALEVSGLLQSRI-V---ERA-SAKEELRM--VKADLESRTRRLEREKVELQSGL-----EKELDRR--S-SDWSFKLEKY 474 (961)
Q Consensus 410 ~EEaaGi~Kyk~-a---erk-~t~enL~R--i~~ELe~QLepLEkQaekAK~yL-----EKEL~rr--q-nE~~~kI~~~ 474 (961)
+||...-+-|=. | .+| .+..-|.+ ++.++-.+++.|+.....|+... +..+-.. . .....+|..+
T Consensus 374 lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieel 453 (1041)
T KOG0243|consen 374 LEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEEL 453 (1041)
T ss_pred HHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHH
Confidence 678887777765 2 222 66666777 99999999999999999998876 4444211 1 4566777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 475 QMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEAD 554 (961)
Q Consensus 475 EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEe 554 (961)
+.+.+.++++++.+.+........-..+..+...++.++......+..+..++.+++..|.....-++....-...+..-
T Consensus 454 e~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~ 533 (1041)
T KOG0243|consen 454 EEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDR 533 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888875555445555555555555555555555555555555544443333333333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 555 LYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 555 ld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
--.++..++.-+..+..+...|.++.+.-+.+..-|.++..++
T Consensus 534 a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l 576 (1041)
T KOG0243|consen 534 ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQL 576 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhh
Confidence 3344555555555555555555555555444444455555554
No 107
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.20 E-value=0.27 Score=52.25 Aligned_cols=104 Identities=24% Similarity=0.319 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 490 EQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMEC 569 (961)
Q Consensus 490 EknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei 569 (961)
+-..+|+.+|+.+..+.......+..+..++.++..-+..+..++..++..+.. |..-+..+..++..+...+.++
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~----y~kdK~~L~~~k~rl~~~ek~l 102 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN----YEKDKQSLQNLKARLKELEKEL 102 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666666666666666666666655543 4455556667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 570 KDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 570 ~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
..+.-+-..|...+..++.+...|...|
T Consensus 103 ~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 103 KDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777666
No 108
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.18 E-value=0.078 Score=60.29 Aligned_cols=53 Identities=9% Similarity=0.171 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 479 QRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYT 531 (961)
Q Consensus 479 k~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEele 531 (961)
..+..+...+..+...++.++..++.++..+...+..++.++..++..+..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~ 178 (423)
T TIGR01843 126 ELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS 178 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555444444444444444444444444433333
No 109
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.18 E-value=0.032 Score=56.21 Aligned_cols=122 Identities=21% Similarity=0.337 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQ---QLKDLTRRAEQYTEENGDLRQNL 541 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~lee---qIe~ltselEeleeELeeleqel 541 (961)
..+..++..++.+...+..+|..|..++..+..+|..++.++.++...+..... ..+.++..+..+.++++.....+
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L 96 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKL 96 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 445666666666666677777777777777777777777777777777666654 34557777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 542 SELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQ 586 (961)
Q Consensus 542 eEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~l 586 (961)
.+..+++..+....+.+.+.+..+..+....++.+..+..+....
T Consensus 97 ~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 97 KETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777777777776666666666666655443
No 110
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=97.14 E-value=0.14 Score=55.78 Aligned_cols=190 Identities=17% Similarity=0.167 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 467 WSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGE 546 (961)
Q Consensus 467 ~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~e 546 (961)
++..|..+......+-++....+.+...+-.+++.-++...++...|..++.+..-.-.. ++--+-+= -+..
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~q---lR~~llDP-----Ainl 177 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQ---LRSTLLDP-----AINL 177 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH---HHHHhhCh-----HHHH
Confidence 445566777778888888888899999999999999999999999988887665421111 11111100 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH--------HHHHhhh------hhHhhhc
Q 002131 547 KFRAAEADLYCIKRNFEEKEMECKD---------LQKSITRLLRTCSEQEKT--------IAGLRDG------FSDQIEK 603 (961)
Q Consensus 547 e~qeaeEeld~iR~e~eEleeei~e---------leKeIa~Lq~~Ik~lEKt--------Ie~LrqE------L~eElek 603 (961)
.|.-++-++..-+..+++.++++.. -..=++.|+.-+.+++.- |+.|+-+ +++++.+
T Consensus 178 ~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElks 257 (330)
T KOG2991|consen 178 FFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKS 257 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHH
Confidence 1222222222222222222222210 011134444444444433 6666555 3455544
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh
Q 002131 604 KPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAAL 666 (961)
Q Consensus 604 e~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~ 666 (961)
. .+++..+++.+-+++++.+.-...|+++|...+.+|..|...+..+..-+.+..++.+.+
T Consensus 258 s--q~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~~~a~ 318 (330)
T KOG2991|consen 258 S--QEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDEVDAI 318 (330)
T ss_pred h--HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 4 788888888888899998888889999999999999999999988888888777776654
No 111
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.14 E-value=0.52 Score=57.82 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 630 SLRREIESYRVEVDSLRHENISLLNRL 656 (961)
Q Consensus 630 ~LReELEsle~EIEsLReEl~~L~rRL 656 (961)
....+|..+...++.+.+++..+...|
T Consensus 283 ~~~~ELq~~qe~Lea~~qqNqqL~~ql 309 (617)
T PF15070_consen 283 MAHQELQEAQEHLEALSQQNQQLQAQL 309 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333444444444444444444444444
No 112
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.12 E-value=1.3 Score=54.65 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 572 LQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENIS 651 (961)
Q Consensus 572 leKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~ 651 (961)
..+.+..+...+..++.++..+.+.| .......-+..+...++.++.++..+......+.++++.++.+++.++.++..
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l-~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKI-STIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666 32222112444444444444444444444444444444444444444444433
Q ss_pred H
Q 002131 652 L 652 (961)
Q Consensus 652 L 652 (961)
+
T Consensus 468 ~ 468 (650)
T TIGR03185 468 K 468 (650)
T ss_pred H
Confidence 3
No 113
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.11 E-value=0.55 Score=50.33 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 468 SFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESR 510 (961)
Q Consensus 468 ~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~ 510 (961)
..-+...+.+......+..+|..+...+......+..-+.+..
T Consensus 8 d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~E 50 (207)
T PF05010_consen 8 DAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYE 50 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444444444444444444444444443333333333333
No 114
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.10 E-value=0.42 Score=54.12 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=42.0
Q ss_pred HHHHHHhHHhhhhhhcchhhhhhhcccccCCCChhHHHHHHhcChHHHHHHHHHHhhhhH--HHH-HHhh--hHHHHHHH
Q 002131 359 VELRRRSKEAEGRVMVLSEELEHETFLHDTGFDVPAMIQTIRILTEEKMSLALEVSGLLQ--SRI-VERA--SAKEELRM 433 (961)
Q Consensus 359 ~~l~~~~ke~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~edRR~i~EEaaGi~K--yk~-aerk--~t~enL~R 433 (961)
-||.++..+--.-|--+.++... +.|.||+-..+.+.|-|.++..=--.+| +|+ |... .=+-.+..
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~---------~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~ 148 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYE---------SNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLE 148 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---------cCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777776554444333333332 2377888776667666655544333333 222 2111 22222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHH
Q 002131 434 -VKADLESRTRRLEREKVELQ 453 (961)
Q Consensus 434 -i~~ELe~QLepLEkQaekAK 453 (961)
|+..|+..+..|......+.
T Consensus 149 gl~~~L~~~~~~L~~D~~~L~ 169 (325)
T PF08317_consen 149 GLKEGLEENLELLQEDYAKLD 169 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444
No 115
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.09 E-value=0.77 Score=51.76 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH--------------hhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 002131 576 ITRLLRTCSEQEKTIAGLRDGFSD--------------QIEKKPALDKYDKHVALLQREQMRLTGVEMSLR----REIES 637 (961)
Q Consensus 576 Ia~Lq~~Ik~lEKtIe~LrqEL~e--------------Eleke~~vee~ek~Ie~lq~ElerLt~~eE~LR----eELEs 637 (961)
|++|..++..+..+...|+..|.. .++++ ..+....+|..++.++.+|........ .+...
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~D-t~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~ 258 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEEND-TAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQ 258 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777776666666632 11233 356677777788877777755444333 34455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 002131 638 YRVEVDSLRHENISLLNRLKGN 659 (961)
Q Consensus 638 le~EIEsLReEl~~L~rRLq~~ 659 (961)
+-.+...++++|..+.++|+--
T Consensus 259 ~~~eek~ireEN~rLqr~L~~E 280 (310)
T PF09755_consen 259 YLQEEKEIREENRRLQRKLQRE 280 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777776643
No 116
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.99 E-value=1.5 Score=53.25 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHHHHHHHHHHhc
Q 002131 610 YDKHVALLQREQMRL----TGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKELWTRICCLQNQ 684 (961)
Q Consensus 610 ~ek~Ie~lq~ElerL----t~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q 684 (961)
.+..|..+-++++++ ....+....+|..++.++......+..+.++|+.-.+. -+|++.+.-|+.=
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDY---------eeIK~ELsiLk~i 359 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDY---------EEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH---------HHHHHHHHHHHHh
Confidence 445555555555544 34455666677777777777777777777777766443 3445555555543
No 117
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.97 E-value=0.4 Score=56.13 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 467 WSFKLEKYQMEEQRLRERVRELAEQNVSLQR---EVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSE 543 (961)
Q Consensus 467 ~~~kI~~~EsEkk~LrERlreLeEknvsLqr---EIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleE 543 (961)
-..+|-.++..--.|..+|.+|+=+-.+-+- -|..++.++.++-+.-=.+-.........+.-+.+-+.+.++.+.|
T Consensus 329 Qq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqE 408 (527)
T PF15066_consen 329 QQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQE 408 (527)
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555544433222 2223333333332222122222222233333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 544 LGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDG 596 (961)
Q Consensus 544 l~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqE 596 (961)
.+.+-..++-++..++.+|--+++....--.+-.+.-.+|-+.++++...+.+
T Consensus 409 sr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeee 461 (527)
T PF15066_consen 409 SRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEE 461 (527)
T ss_pred HHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 44444444444555555555555444444444444444555555554444444
No 118
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=1.4 Score=52.66 Aligned_cols=99 Identities=26% Similarity=0.345 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 431 LRMVKADLESRTRRLEREKVELQSGLEKELDRRS-------------SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQR 497 (961)
Q Consensus 431 L~Ri~~ELe~QLepLEkQaekAK~yLEKEL~rrq-------------nE~~~kI~~~EsEkk~LrERlreLeEknvsLqr 497 (961)
+.+-|.+|++.+..|+.+....+...|+-....+ .-+...|+.+.-...++-..-.+|++.|.+||.
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3346678888888888888888887755444444 234455666666667777778899999999999
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 002131 498 EVSTFNEREAE---SRSMITHSEQQLKDLTRRAEQ 529 (961)
Q Consensus 498 EIe~leeKi~E---l~~kIe~leeqIe~ltselEe 529 (961)
.++.+.+.-.+ ++-.|.++++.++=+...++.
T Consensus 185 qVs~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 185 QVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988775544 344455555444444444433
No 119
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=96.92 E-value=1.5 Score=52.26 Aligned_cols=98 Identities=20% Similarity=0.160 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 002131 444 RLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAES-RSMITHSEQQLKD 522 (961)
Q Consensus 444 pLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El-~~kIe~leeqIe~ 522 (961)
.|+.-+.+++.-.|..+...+.....-++..+.|+..+.++.+-|.+--+.|...+.....+|+.+ ...+.....+-..
T Consensus 226 ElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~ 305 (531)
T PF15450_consen 226 ELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKL 305 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 334444444443455666666656666777788999999999999999999999999988888764 3445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002131 523 LTRRAEQYTEENGDLRQNL 541 (961)
Q Consensus 523 ltselEeleeELeeleqel 541 (961)
+.+.++.+...+.+.-..+
T Consensus 306 e~sk~eeL~~~L~~~lea~ 324 (531)
T PF15450_consen 306 EESKAEELATKLQENLEAM 324 (531)
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 5666666665555544443
No 120
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.91 E-value=2.1 Score=53.82 Aligned_cols=259 Identities=15% Similarity=0.217 Sum_probs=173.9
Q ss_pred HHHHHH-hhhhHHHH---HHhh----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHH
Q 002131 408 SLALEV-SGLLQSRI---VERA----SAKEELRM--VKADLESRTRRLEREKVELQSGLEKELDRRS----SDWSFKLEK 473 (961)
Q Consensus 408 ~i~EEa-aGi~Kyk~---aerk----~t~enL~R--i~~ELe~QLepLEkQaekAK~yLEKEL~rrq----nE~~~kI~~ 473 (961)
.++||| +|-=|... +.+. .+..|+.- -+.-|+.-|..--.|+..++...|+.|...= .+|......
T Consensus 10 kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~ 89 (769)
T PF05911_consen 10 KVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSE 89 (769)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345554 45555444 3333 33333332 3344555555555555555555555444332 777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 474 YQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEA 553 (961)
Q Consensus 474 ~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeE 553 (961)
++..+--+..++..+.-.+..+..-+..-..-|.++.......+..+..+...++.++.++..|+-++.-+..+++.-.+
T Consensus 90 le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~ 169 (769)
T PF05911_consen 90 LEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNE 169 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhhhHhhhcchhhhhhHHHH---------
Q 002131 554 DLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT----------IAGLRDGFSDQIEKKPALDKYDKHV--------- 614 (961)
Q Consensus 554 eld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt----------Ie~LrqEL~eEleke~~vee~ek~I--------- 614 (961)
+++.-++-.+.--.+..+--|.|+.|...|.++.-- +++-+.+. +.+|.+ +.+ .-.+.
T Consensus 170 E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev-~~~~~~-~~~-~r~r~~~~~~~~~~ 246 (769)
T PF05911_consen 170 EREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEV-ESLGRD-SGE-NRRRRSPSRPSSPH 246 (769)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHH-HHhccc-ccc-ccCCCCCCcccccc
Confidence 999999998888889999999999999999999876 56666666 555443 110 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhh
Q 002131 615 ALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMK 669 (961)
Q Consensus 615 e~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~k 669 (961)
.-.-.........-+-|-.+|..++.|+.-|++-+......||-..+-..-...+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~k 301 (769)
T PF05911_consen 247 DFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASK 301 (769)
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111122223344455566666666666666666666666655544443333
No 121
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.91 E-value=0.76 Score=52.03 Aligned_cols=123 Identities=21% Similarity=0.297 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYT----EENGDLRQN 540 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEele----eELeeleqe 540 (961)
.+|..++ .+.=+..|.+.+..|..-...|...++.+..-.-.+..+...+..++..++.....+. .++..++..
T Consensus 135 YeWR~kl--legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~ 212 (312)
T smart00787 135 YEWRMKL--LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEK 212 (312)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHH
Confidence 8888777 7788888888888888888888888888888888888888888888888777777764 477777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 541 LSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 541 leEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
+.+...++...+..+..++.++.++...+.+....+..++..|.++++.
T Consensus 213 l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 213 LKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766666666666666666666666666666666665553
No 122
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.91 E-value=0.083 Score=65.61 Aligned_cols=9 Identities=0% Similarity=-0.330 Sum_probs=4.8
Q ss_pred cccCCCCCh
Q 002131 685 GISMLNEST 693 (961)
Q Consensus 685 ~lS~~d~n~ 693 (961)
...+..|+.
T Consensus 422 P~~P~~P~~ 430 (754)
T TIGR01005 422 PSEPYFPKK 430 (754)
T ss_pred CCCCCCCch
Confidence 445555654
No 123
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.91 E-value=0.55 Score=56.83 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=18.6
Q ss_pred HHHhcChHHHHHHHHHHhhhhHHH
Q 002131 397 QTIRILTEEKMSLALEVSGLLQSR 420 (961)
Q Consensus 397 ~~i~~~~edRR~i~EEaaGi~Kyk 420 (961)
+...-.|..+|.|+++.+|+...+
T Consensus 137 ~~~l~~~~~~~~lLD~~~~~~~~~ 160 (563)
T TIGR00634 137 QQLLFRPDEQRQLLDTFAGANEKV 160 (563)
T ss_pred HHHhcCHHHHHHHHHHhcCchHHH
Confidence 344568999999999999975433
No 124
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.88 E-value=0.13 Score=50.84 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 623 RLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKG 658 (961)
Q Consensus 623 rLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~ 658 (961)
.|...+..|..+|..++..++.|..+|..|-.+|..
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355557777788888888888888888888777754
No 125
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.83 E-value=0.67 Score=52.58 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 477 EEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLY 556 (961)
Q Consensus 477 Ekk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld 556 (961)
+..-|..-+....++|.+|+.|+..+.+++.++...|.-+.+++.........+.....- .+...+-..+.
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---------~ere~lV~qLE 136 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---------HEREDLVEQLE 136 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---------hHHHHHHHHHH
Confidence 455666677777888888888888888888888888888888877766655443322211 22222333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 557 CIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIE 636 (961)
Q Consensus 557 ~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELE 636 (961)
.++....+++.++..+..+...+-..-+.......+|..+|.--++++ -.-+- .|+.+-||=-=|.+...++.+|+.
T Consensus 137 k~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~--~~riv-DIDaLi~ENRyL~erl~q~qeE~~ 213 (319)
T PF09789_consen 137 KLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGD--ENRIV-DIDALIMENRYLKERLKQLQEEKE 213 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555556666677777776677776 22221 355566665556666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 002131 637 SYRVEVDSLRHENI 650 (961)
Q Consensus 637 sle~EIEsLReEl~ 650 (961)
.+..-|..++.-+.
T Consensus 214 l~k~~i~KYK~~le 227 (319)
T PF09789_consen 214 LLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666555
No 126
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.83 E-value=0.083 Score=59.23 Aligned_cols=138 Identities=18% Similarity=0.220 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 429 EELRMVKADLESRTRRLEREKVELQSGL-EKELDRRS--SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNER 505 (961)
Q Consensus 429 enL~Ri~~ELe~QLepLEkQaekAK~yL-EKEL~rrq--nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeK 505 (961)
++|.+=+..|+.+-..|..++..++..- .-+-..++ .+++..+......+..|.+.|..-.+.+...+.+|+.+..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777777777777777555 22222444 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 506 EAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKE 566 (961)
Q Consensus 506 i~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEle 566 (961)
+..+..+...+....+.+...+...++....+..++.+++++|.+....+...+++++.+.
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988888888888888888888888888888888888777777777766554
No 127
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.81 E-value=1.1 Score=50.62 Aligned_cols=109 Identities=25% Similarity=0.349 Sum_probs=57.0
Q ss_pred HHHHHhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 457 EKELDRRS-----SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYT 531 (961)
Q Consensus 457 EKEL~rrq-----nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEele 531 (961)
=|.+.+.+ .+|..+ -.+.=+..|.+++..|..-...|...++.+..-...+..+-..+..++..++.....+.
T Consensus 127 vK~~aRl~aK~~WYeWR~~--ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~ 204 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQ--LLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIE 204 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444544 666533 34555666666666666666666666666666666666666666666665555544433
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 532 ----EENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEM 567 (961)
Q Consensus 532 ----eELeeleqeleEl~ee~qeaeEeld~iR~e~eElee 567 (961)
.+|..++.++.+........+.++..++.++..+..
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEE 244 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333333333333333333
No 128
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.75 E-value=0.0012 Score=81.50 Aligned_cols=201 Identities=16% Similarity=0.206 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
..+..+++..+.+...+...+..|+.....+..++..++..+..+...+.+++.+..-...+.+-++..|+.+..+....
T Consensus 353 ~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~ 432 (722)
T PF05557_consen 353 ASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTM 432 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 45566677777777777777777777777777777777777777777777777777766777777766666655543332
Q ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHH
Q 002131 545 GEKF------RAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQ 618 (961)
Q Consensus 545 ~ee~------qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq 618 (961)
...- ..+....+.+.....++...+..+++.+......+..+...+..+.+.. ..-.. ++..+...+..++
T Consensus 433 ~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~-~~~~~--~~~~~~e~~~~L~ 509 (722)
T PF05557_consen 433 NPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQL-SSNDR--SLSSLSEELNELQ 509 (722)
T ss_dssp --------------------------------------------------------------HHC--CCCHHHHHHHHHH
T ss_pred cCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhh-hhccc--hhhhhHHHHHHHH
Confidence 2110 0111112222222222333344444444444444444444444443333 11111 1333444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhcCCchhhhHh
Q 002131 619 REQMRLTGVEMSLRREIESYRVEVDS--LRHENISLLNRLKGNGKESAALTM 668 (961)
Q Consensus 619 ~ElerLt~~eE~LReELEsle~EIEs--LReEl~~L~rRLq~~~ne~~~~~~ 668 (961)
.++..|......|+.++..++.+++. |+........|+=.+.++|.....
T Consensus 510 ~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~ 561 (722)
T PF05557_consen 510 KEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAE 561 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHH
Confidence 55555555555555555555554443 222333333344444444444333
No 129
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=1.1 Score=55.65 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 467 WSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREA 507 (961)
Q Consensus 467 ~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~ 507 (961)
+......++.+.+-|.+.+..+.+.+.+++++++.++.++.
T Consensus 676 lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 676 LKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444455555555555555555555555555554444
No 130
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.73 E-value=0.66 Score=56.69 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 558 IKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 558 iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
++........+....-.+|..++..++....++...++.+
T Consensus 431 lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~ 470 (594)
T PF05667_consen 431 LKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELY 470 (594)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444555555555555555544444443
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.73 E-value=0.19 Score=50.77 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 483 ERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNF 562 (961)
Q Consensus 483 ERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~ 562 (961)
+.++....+..+|+..|..++..+..+......+....+... .++..++..++.+-........+++.++++-
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k-------~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSK-------AEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666555555555555554433333333 3333344444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 563 EEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDG 596 (961)
Q Consensus 563 eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqE 596 (961)
..+...+.+....|..|.........-|..++++
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444
No 132
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.69 E-value=0.91 Score=48.12 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSL 645 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsL 645 (961)
-+..++.|..++.+..+|......++.+...+..+++..
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444555555555555444444455544444444433
No 133
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.64 E-value=0.3 Score=48.36 Aligned_cols=118 Identities=22% Similarity=0.255 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 469 FKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKF 548 (961)
Q Consensus 469 ~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~ 548 (961)
.++..++.+++.+...+.....+...++.++........++..+.++=-......-..+..++.++..+...+.++....
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~ 82 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEA 82 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666554444444455555555566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 549 RAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 549 qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
+.++..+...+ ..+..+...++++|..+...|..+...
T Consensus 83 ~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 83 ESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555553332 234444555556666666666655544
No 134
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.64 E-value=0.00096 Score=82.16 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002131 913 VNVLKKKIEVLDEDLLL 929 (961)
Q Consensus 913 v~~lkk~ie~Leedi~~ 929 (961)
+..|...+...++++..
T Consensus 578 i~~Le~~L~~k~~e~~~ 594 (713)
T PF05622_consen 578 IEELEEALQKKEEEMRA 594 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHhHHHHHh
Confidence 33344444444444433
No 135
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.57 E-value=1.3 Score=51.91 Aligned_cols=58 Identities=21% Similarity=0.386 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 471 LEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAE 528 (961)
Q Consensus 471 I~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselE 528 (961)
+...+.++..++.+++....+..+|+.+|..++..+..++..+..+...+..+..++.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 3333444444444444444444333333333333333333333333333333333333
No 136
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=2.7 Score=50.41 Aligned_cols=127 Identities=20% Similarity=0.192 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHH---HHHHHHHHhhhhhhh--hHHHHHHHHH-HH
Q 002131 801 TSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVT---HKLKDLELQMLKKDE--SINQLQIDLQ-DS 874 (961)
Q Consensus 801 ~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~---~k~k~LE~q~~K~~D--~I~~lq~dlq-e~ 874 (961)
+.-|+.+|.+.+.+.-.+-+-++....+.+.-+....+....+.-++ ..+..|....+++.+ .=.-.+.|+- -.
T Consensus 320 iqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d~kgEk~rdg~~kad~~e~~ 399 (772)
T KOG0999|consen 320 IQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKDKKGEKGRDGGEKADLYEVD 399 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhccccccccccchhHHhh
Confidence 56677777777777666666666655444444444444444443333 233333334444322 0011111222 22
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHH
Q 002131 875 AKELKIMKGVLPKVSEERDMMWEEVKQYSEKNML------LNSEVNVLKKKIEVLDEDL 927 (961)
Q Consensus 875 ~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~------~k~Ev~~lkk~ie~Leedi 927 (961)
-..+.+|-+.+.-.-.+++.+..+.+++..+.+- +.++|..+.+++..|+..-
T Consensus 400 l~a~e~~a~k~~~a~~e~i~lk~ql~~l~~~~n~tde~~~~e~evq~l~~kl~llekas 458 (772)
T KOG0999|consen 400 LNALEILACKYAVAVDEMIQLKDQLKALYHQLNYTDEKVQYEKEVQELVEKLRLLEKAS 458 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 2445566677777777888888888888777443 3456666666666666554
No 137
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.56 E-value=1.9 Score=48.46 Aligned_cols=207 Identities=17% Similarity=0.243 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-----------H
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITH-------SEQQLKDLTR-----------R 526 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~-------leeqIe~lts-----------e 526 (961)
..+...+..+-.|=-+|..++..=.+...+|..||+++..++..+-..-+. ++..+.+... +
T Consensus 59 ~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d 138 (305)
T PF14915_consen 59 FQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSD 138 (305)
T ss_pred HHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcch
Confidence 444444444444555555555444455555555555555554444333222 1111222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchh
Q 002131 527 AEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPA 606 (961)
Q Consensus 527 lEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~ 606 (961)
+..+++..+-+-+.+++....+..++.++...+.-+.++-=-+..++.++...+-++++.++.-...+..+..-+ +.
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~-~K-- 215 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYI-GK-- 215 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HH--
Confidence 223333344444555555555555555555555555544444445555555555555555555444444442222 22
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHH
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKEL 674 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El 674 (961)
-+.++.++.-+|.+=+=|.+..+....+...-+.-+-.+.........+|+.-..+....+...+++|
T Consensus 216 qes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL 283 (305)
T PF14915_consen 216 QESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKEL 283 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 23333333333333333333333333333333333333444444444444444444455555555555
No 138
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.56 E-value=0.37 Score=54.85 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 002131 634 EIESYRVEVDSLRHENISLLNRLK 657 (961)
Q Consensus 634 ELEsle~EIEsLReEl~~L~rRLq 657 (961)
++...+.++..++.++..+..++.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444443
No 139
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.55 E-value=0.68 Score=58.00 Aligned_cols=120 Identities=20% Similarity=0.288 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 494 SLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQ 573 (961)
Q Consensus 494 sLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~ele 573 (961)
.+..+++.++.....+...+.....+++.+...+.+.+..|..++..+.-..+.-..++..+.+.+.-++.++.....++
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e 672 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLE 672 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34444444444444444444444444444444555555555555555555555555556666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHH
Q 002131 574 KSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVAL 616 (961)
Q Consensus 574 KeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~ 616 (961)
.++..+...+..++.+|...+... +++... ..+++..+++
T Consensus 673 ~E~~~l~~Ki~~Le~Ele~er~~~-~e~~~k--c~~Le~el~r 712 (769)
T PF05911_consen 673 AEAEELQSKISSLEEELEKERALS-EELEAK--CRELEEELER 712 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-hhhhhH--HHHHHHHHHh
Confidence 666666666666666666666555 444333 3334433333
No 140
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.54 E-value=1.6 Score=58.31 Aligned_cols=21 Identities=10% Similarity=-0.050 Sum_probs=14.4
Q ss_pred cccccCCCChhHHHHHHhcChH
Q 002131 383 TFLHDTGFDVPAMIQTIRILTE 404 (961)
Q Consensus 383 ~~~~~~~~~~~~~~~~i~~~~e 404 (961)
-+..|.+|..-.|-|..- +|.
T Consensus 707 ~v~~dG~~r~G~l~G~~~-k~~ 727 (1353)
T TIGR02680 707 WIDVDGRFRLGVLRGAWA-KPA 727 (1353)
T ss_pred eECCCCceeeeeeecccC-Ccc
Confidence 477888888777776644 443
No 141
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.53 E-value=0.48 Score=53.69 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 494 SLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQ 573 (961)
Q Consensus 494 sLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~ele 573 (961)
-+.++++.+.......+.+++.+.+....++.....+..+....-+.---...........+...|.....+..++..+.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444444444433333111100000000000112222223333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhhhcc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 574 KSITRLLRTCSEQEKTIAGLRDGFSDQIEKK---PALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENI 650 (961)
Q Consensus 574 KeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke---~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~ 650 (961)
+.+..++..|+-+-.+++..+-+. ..++.. +.-+.+...++.++...+.|+-....+-.|.+++..|-+..+....
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~-~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGD-EGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhh-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443 222211 0122333344444444444444444444444444444444444444
Q ss_pred HHHHHhhhcCCchhhhHhhhh------HHHHHHHHHHHhc
Q 002131 651 SLLNRLKGNGKESAALTMKLD------KELWTRICCLQNQ 684 (961)
Q Consensus 651 ~L~rRLq~~~ne~~~~~~kl~------~El~~~I~~lq~q 684 (961)
.|+..|.-+=++-...+...| +=|+.+|..+|++
T Consensus 172 RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE 211 (319)
T PF09789_consen 172 RLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEE 211 (319)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333222333444 2238888888886
No 142
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=2.5 Score=49.62 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=104.0
Q ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh-------hhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 426 SAKEELRM---VKADLESRTRRLEREKVELQSGL-EKELDRRS-------SDW-SFKLEKYQMEEQRLRERVRELAEQNV 493 (961)
Q Consensus 426 ~t~enL~R---i~~ELe~QLepLEkQaekAK~yL-EKEL~rrq-------nE~-~~kI~~~EsEkk~LrERlreLeEknv 493 (961)
.-..||.. .+.++..++..|..|+++.+.-+ ++.+.=+. .+- ..+|..++.+...+.++++.=++-+.
T Consensus 290 dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~ 369 (521)
T KOG1937|consen 290 DGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAE 369 (521)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 66677777 89999999999999999999999 22221111 112 57889999999999999985555555
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 494 SLQREVSTFNE--REAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKD 571 (961)
Q Consensus 494 sLqrEIe~lee--Ki~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~e 571 (961)
.|..+++.+-. .....+..|.++.-.+-+...++.++.++-.+++++...+.++++--=.-.|.+-=.-....-....
T Consensus 370 ~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~ 449 (521)
T KOG1937|consen 370 KLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRL 449 (521)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHH
Confidence 55555554322 2555666666666666666677777777666666666655555443322222221111112223346
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002131 572 LQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 572 leKeIa~Lq~~Ik~lEKt 589 (961)
+-|-++++...|..+-..
T Consensus 450 aykllt~iH~nc~ei~E~ 467 (521)
T KOG1937|consen 450 AYKLLTRIHLNCMEILEM 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667778888888777666
No 143
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.53 E-value=3.4 Score=53.98 Aligned_cols=126 Identities=10% Similarity=0.076 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Q 002131 519 QLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDG-- 596 (961)
Q Consensus 519 qIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqE-- 596 (961)
+...++.+..-++.++..++.++.......+.++..++-.+.++..++..+..++..|+..+..-.+. +++.-+..
T Consensus 174 ~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~--~~~~~~~~~~ 251 (1109)
T PRK10929 174 QLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAER--ALESTELLAE 251 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHH
Confidence 34455556666666666666666666666666666666666666666666666666666544333222 22222221
Q ss_pred --------hhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 597 --------FSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHEN 649 (961)
Q Consensus 597 --------L~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl 649 (961)
+.+++..+ .++...+..+-.+...+.+.....+..++.+.+....+++++
T Consensus 252 ~~~~~~~~i~~~~~~N---~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 252 QSGDLPKSIVAQFKIN---RELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred hhccCChHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 223334444444455555555555555555555555555554
No 144
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.52 E-value=0.2 Score=62.24 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 483 ERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNF 562 (961)
Q Consensus 483 ERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~ 562 (961)
.|+..|..+......++..+.+++..+..+-+.+.++++.+....+.+...++.+...+....-....++ ..+++++
T Consensus 565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE---r~~~~EL 641 (717)
T PF10168_consen 565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE---REFKKEL 641 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH---HHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444444433222233333 2335666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 563 EEKEMECKDLQKSITRLLRTCSEQEKTIA 591 (961)
Q Consensus 563 eEleeei~eleKeIa~Lq~~Ik~lEKtIe 591 (961)
+.+..++..+...|..++.+++.++..++
T Consensus 642 ~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 642 ERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666777777777777777665555
No 145
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=96.50 E-value=0.58 Score=51.22 Aligned_cols=207 Identities=14% Similarity=0.138 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 440 SRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNV--SLQREVSTFNEREAESRSMITHSE 517 (961)
Q Consensus 440 ~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknv--sLqrEIe~leeKi~El~~kIe~le 517 (961)
..+..|+..-.+++..++ +-.|+.+-+.-++.+.+.|++-+-..|++|..+-. .++-+-+-+-=-| .
T Consensus 108 d~i~nLk~se~~lkqQ~~-~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAi----------n 176 (330)
T KOG2991|consen 108 DDITNLKESEEKLKQQQQ-EAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAI----------N 176 (330)
T ss_pred HHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHH----------H
Confidence 345556665555555441 22344477899999999999999999998876542 2221111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 518 QQLKDLTRRAEQYTEENGDLRQNLSELGEKF--RAAEADLYCIK---RNFEEKEMECKDLQKSITRLLRTCSEQEKTIAG 592 (961)
Q Consensus 518 eqIe~ltselEeleeELeeleqeleEl~ee~--qeaeEeld~iR---~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~ 592 (961)
.-..+++.+++..+..|++++.+++--.=-- ..-+--|-..| .+.+++-. ...+-.|+.|...+.-++.--+.
T Consensus 177 l~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~--q~s~Gria~Le~eLAmQKs~seE 254 (330)
T KOG2991|consen 177 LFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGH--QASEGRIAELEIELAMQKSQSEE 254 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHh--hhhcccHHHHHHHHHHHHhhHHH
Confidence 1122233333333333333333322100000 00112222222 22222222 12344677777777666666666
Q ss_pred HhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002131 593 LRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKE 662 (961)
Q Consensus 593 LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne 662 (961)
|+... +++..= ++++...|+.++..+.-|++...+.|.+|+.+++.++.+.+-+.....+.....+.
T Consensus 255 lkssq-~eL~df--m~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~~~~a~~~~ 321 (330)
T KOG2991|consen 255 LKSSQ-EELYDF--MEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKDEVDAIDED 321 (330)
T ss_pred HHHhH-HHHHHH--HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCc
Confidence 66666 666544 78888889999999999999999999999999999998888776666555544443
No 146
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.48 E-value=5.8 Score=53.18 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=17.8
Q ss_pred CCCCCC-CcchhhhhhhhccccccccccCCCCCCCccccccC
Q 002131 157 CSSGSS-SNVSTKILDRYIDGEQHQERSRPTNSSSQRNYIGN 197 (961)
Q Consensus 157 ~~~~~~-~n~~~~v~d~yidge~~~~~~~~~~~~~~~~~~~~ 197 (961)
|..||+ ||+..-++=-.+||.....+-.+-..+ .|+..++
T Consensus 31 G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~-~r~~~~~ 71 (1353)
T TIGR02680 31 GNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDS-RKRMAWN 71 (1353)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCc-cccHHHH
Confidence 344443 554444343456776543333333322 3444443
No 147
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.48 E-value=0.37 Score=56.89 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 634 EIESYRVEVDSLRHENISLLNRLKG 658 (961)
Q Consensus 634 ELEsle~EIEsLReEl~~L~rRLq~ 658 (961)
++..++.+.+..+.....+..++++
T Consensus 356 el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 148
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.45 E-value=5.4 Score=52.42 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHhHHHHHHHHHH
Q 002131 801 TSLLREKLYSKELEVEQLQAELATA---VRGNDILRCEVQNALDNLSCVTHKLKDL 853 (961)
Q Consensus 801 ~s~LkE~I~~ee~eleqlq~elas~---~~~~~~lr~Eiq~l~dels~~~~k~k~L 853 (961)
...+-..+.....+++.+.+++.+. ++--+.++.|+..+++.+..++..+..+
T Consensus 790 ~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~ 845 (1294)
T KOG0962|consen 790 LERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECL 845 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566667777777777762 2223677777777777777776444333
No 149
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.44 E-value=0.7 Score=54.61 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=42.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcCCchhhhHhhhh
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSL---RHENISLLNRLKGNGKESAALTMKLD 671 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsL---ReEl~~L~rRLq~~~ne~~~~~~kl~ 671 (961)
...+...+...+.++..+......++.+++.++.++..+ ..++..+.+.+.-.++-....+.+++
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777777777776643 34666666666666555554444444
No 150
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.41 E-value=1.3 Score=49.07 Aligned_cols=62 Identities=19% Similarity=0.348 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 486 RELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEK 547 (961)
Q Consensus 486 reLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee 547 (961)
..+......++.+|..+..++.++..++..++.++.+...++.+++.+|+.++..+.+.++.
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444444444444444443333
No 151
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.36 E-value=5.9 Score=52.03 Aligned_cols=91 Identities=14% Similarity=0.210 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 497 REVSTFNEREAESRSMITHSEQQLK-DLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKS 575 (961)
Q Consensus 497 rEIe~leeKi~El~~kIe~leeqIe-~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKe 575 (961)
.++..+..+...+...+..+..++. -.....+.+...+.++.+.+.+....+...+-++..+..+...+...-..+.-+
T Consensus 268 ~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~ 347 (1294)
T KOG0962|consen 268 KQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLE 347 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333 112222333333444444444444444444444433333333333333333334
Q ss_pred HHHHHHHHHHHH
Q 002131 576 ITRLLRTCSEQE 587 (961)
Q Consensus 576 Ia~Lq~~Ik~lE 587 (961)
+..++....-++
T Consensus 348 ~~~lq~e~~~~~ 359 (1294)
T KOG0962|consen 348 QSELQAEAEFHQ 359 (1294)
T ss_pred HHHHHHHHHHHH
Confidence 444444333333
No 152
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.36 E-value=0.25 Score=61.47 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002131 443 RRLEREKVELQSGLEKELDR 462 (961)
Q Consensus 443 epLEkQaekAK~yLEKEL~r 462 (961)
+.-......+..+++..|..
T Consensus 186 ~~k~~~~~~a~~~L~~ql~~ 205 (754)
T TIGR01005 186 AAKSESNTAAADFLAPEIAD 205 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433
No 153
>PF13514 AAA_27: AAA domain
Probab=96.33 E-value=6.1 Score=51.81 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHH---HHHHHHHHh
Q 002131 621 QMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKEL---WTRICCLQN 683 (961)
Q Consensus 621 lerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El---~~~I~~lq~ 683 (961)
...|......+..+++.++.++..+..++..+..+|..++...... .+..++ .+.|..+-.
T Consensus 891 ~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a--~l~~e~e~~~a~l~~~~~ 954 (1111)
T PF13514_consen 891 PDELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAA--ELEQEREEAEAELEELAE 954 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHH--HHHHHHHHHHHHHHHHHH
Confidence 3556667777788888888888888888888888888776654432 333333 444444433
No 154
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.57 Score=51.84 Aligned_cols=69 Identities=16% Similarity=0.294 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 513 ITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLR 581 (961)
Q Consensus 513 Ie~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~ 581 (961)
|.--+.++..++..+..++.+|+.+...+.++..+.+..+++++..+.+++.++.+|..+.+.|..-+.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555566666666555555555555555555555555544333
No 155
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.26 E-value=1.1 Score=52.09 Aligned_cols=52 Identities=13% Similarity=0.019 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 537 LRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 537 leqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEK 588 (961)
++..++.+.++....+...-+++.....+.++...+...|..+.-++...++
T Consensus 302 lqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~ 353 (502)
T KOG0982|consen 302 LQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQK 353 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444443333
No 156
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.14 E-value=2.4 Score=45.22 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 524 TRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMEC-KDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 524 tselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei-~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
...+..+..++.+++-+-+.+..+|..++.+++.+...|...-.+. ..+.-..--|++.+..+....+..+.+|
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL 166 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQL 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555443332 2333344555666666666666666655
No 157
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.10 E-value=0.9 Score=48.50 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 496 QREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKS 575 (961)
Q Consensus 496 qrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKe 575 (961)
..||+-+..++.++..++......|-.+...+......+......+..+...+.....++ +..++++....++
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~EL-------E~ce~ELqr~~~E 81 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLEL-------EVCENELQRKKNE 81 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhH-------HHhHHHHHHHhCH
Confidence 467888888888888888888777777777777777777777777777766666664444 4444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 002131 576 ITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 576 Ia~Lq~~Ik~lEKtIe~LrqEL 597 (961)
+.-++..+..++.++.+|+..+
T Consensus 82 a~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREEL 103 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHH
Confidence 6666666666666677777666
No 158
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.05 E-value=3.6 Score=46.58 Aligned_cols=103 Identities=15% Similarity=0.177 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHH
Q 002131 542 SELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQ 621 (961)
Q Consensus 542 eEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~El 621 (961)
.+.-.++..|...+..+..++..+.+++..-+.+|+.|..++-.+++....+-.+ -+++..++...+.-.
T Consensus 202 ~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~E----------nEeL~q~L~~ske~Q 271 (306)
T PF04849_consen 202 LDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAE----------NEELQQHLQASKESQ 271 (306)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHH
Confidence 3344555666666666666666666666667777777777666666654433322 233344555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 622 MRLTGVEMSLRREIESYRVEVDSLRHENISLLN 654 (961)
Q Consensus 622 erLt~~eE~LReELEsle~EIEsLReEl~~L~r 654 (961)
..|+.+...++.+...|..-+.+.++++..+++
T Consensus 272 ~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 272 RQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 666666777777777777777777776666554
No 159
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.04 E-value=0.4 Score=52.90 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGL---EKELDRRS---SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREA 507 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yL---EKEL~rrq---nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~ 507 (961)
-|.||+.|++.|.++...-+..| |..|+... .+-...+..+.-|-+.|.+-...|+....++..++-..+..+.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~ 98 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN 98 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence 47889999999998887777666 88887776 5556667777888888888899999999999888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 508 ESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLS 542 (961)
Q Consensus 508 El~~kIe~leeqIe~ltselEeleeELeeleqele 542 (961)
-+.-.+.+...+|+.++.++...+.+|+..+....
T Consensus 99 ~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 99 FLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77777777777777777777777777776655544
No 160
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=2.5 Score=52.64 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhHhhhcchhhhhhHHHHHHHHHHHHH
Q 002131 546 EKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIA--GLRDGFSDQIEKKPALDKYDKHVALLQREQMR 623 (961)
Q Consensus 546 ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe--~LrqEL~eEleke~~vee~ek~Ie~lq~Eler 623 (961)
+......+++..++.+.+.+..+..-+.++++.....+..++.++. .+.++-....-++ .+.-++ +..++..
T Consensus 730 e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~-----qeqv~E-l~~~l~e 803 (970)
T KOG0946|consen 730 EASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGD-----QEQVIE-LLKNLSE 803 (970)
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhh-----HHHHHH-HHHhhhh
Confidence 3344445666666777777777777777777666666666666633 1222210111111 111111 1111333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002131 624 LTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKE 662 (961)
Q Consensus 624 Lt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne 662 (961)
+......+..++..++.++..+-+...+....+-.++.-
T Consensus 804 ~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~ 842 (970)
T KOG0946|consen 804 ESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGST 842 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcc
Confidence 334444555555555555555555555555555444443
No 161
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.99 E-value=3.8 Score=46.40 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 426 SAKEELRMVKADLESRTRRLEREKVEL 452 (961)
Q Consensus 426 ~t~enL~Ri~~ELe~QLepLEkQaekA 452 (961)
.+++-|..++-||+.+-..|..+....
T Consensus 71 ~~k~KLE~LCRELQk~Nk~lkeE~~~~ 97 (309)
T PF09728_consen 71 LAKSKLESLCRELQKQNKKLKEESKRR 97 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666665544433
No 162
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.99 E-value=1.1 Score=52.23 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=3.0
Q ss_pred hhHHHHH
Q 002131 357 EDVELRR 363 (961)
Q Consensus 357 ~d~~l~~ 363 (961)
+..++++
T Consensus 71 tq~~il~ 77 (444)
T TIGR03017 71 TQVDIIN 77 (444)
T ss_pred HHHHHHH
Confidence 3344443
No 163
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.94 E-value=2.5 Score=43.72 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 514 THSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGL 593 (961)
Q Consensus 514 e~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~L 593 (961)
..+..+|+.-..++..++.........+.-.++....+..+...++.++......+..+..++..+......+.+....+
T Consensus 52 ~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 52 QQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555555555555555555556666666666666666666666666666555
Q ss_pred hhhh
Q 002131 594 RDGF 597 (961)
Q Consensus 594 rqEL 597 (961)
+...
T Consensus 132 ~~~~ 135 (177)
T PF13870_consen 132 RQQG 135 (177)
T ss_pred HHhc
Confidence 5554
No 164
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=95.88 E-value=0.21 Score=57.43 Aligned_cols=116 Identities=22% Similarity=0.311 Sum_probs=86.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 457 EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGD 536 (961)
Q Consensus 457 EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELee 536 (961)
...|++...++...+++.++.++.+++++..|-.++...+++++..+++.+++...+.++...+..++.+++.++.++++
T Consensus 240 ~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 240 KSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788899999999999999999999999999999999999999999999999999988887777777777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 537 LRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLL 580 (961)
Q Consensus 537 leqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq 580 (961)
.-..+.. . .=+-.+|.-+..++.++.++.=+|..++
T Consensus 320 rg~~mtD-------~-sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 320 RGSSMTD-------G-SPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred hcCCCCC-------C-CHHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 4433222 1 1222444555555555555555555544
No 165
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.86 E-value=0.0022 Score=79.03 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH--------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGL-EK--------ELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNE 504 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yL-EK--------EL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~lee 504 (961)
.+.+|..+...|...+..++.|. |= .++++.+.+ .+-++.-.+...++.+|+.|+++|..|...+..++.
T Consensus 275 ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v-e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEe 353 (713)
T PF05622_consen 275 EIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV-EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEE 353 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555 11 111111222 222233345666777777777777766666666666
Q ss_pred HHHH
Q 002131 505 REAE 508 (961)
Q Consensus 505 Ki~E 508 (961)
.+..
T Consensus 354 el~~ 357 (713)
T PF05622_consen 354 ELKK 357 (713)
T ss_dssp ----
T ss_pred HHHH
Confidence 5544
No 166
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.74 E-value=6.8 Score=47.23 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRR 526 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltse 526 (961)
..|..++-..+.+.+.|.+++. +..++..+..+...+...+.-+.......+..+..|+..
T Consensus 183 ~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~k 243 (511)
T PF09787_consen 183 VEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQK 243 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5566666777777777777777 445677777777777777777777777776666666644
No 167
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.70 E-value=9.9 Score=48.84 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=4.5
Q ss_pred hhhhHHHHHHhh
Q 002131 414 SGLLQSRIVERA 425 (961)
Q Consensus 414 aGi~Kyk~aerk 425 (961)
+.+++..-.+|+
T Consensus 146 ~~fl~~~~~er~ 157 (908)
T COG0419 146 DAFLKSKPKERK 157 (908)
T ss_pred HHHHhcCcHHHH
Confidence 333333333333
No 168
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.69 E-value=8.1 Score=47.79 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002131 863 SINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLK 917 (961)
Q Consensus 863 ~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lk 917 (961)
.|..-...+...+.++..|...|....+......++..++.+.+.....++..|.
T Consensus 462 ~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le 516 (716)
T KOG4593|consen 462 EITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLE 516 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3333333343444444444444444444444444444444444444433333333
No 169
>PRK10869 recombination and repair protein; Provisional
Probab=95.63 E-value=7.8 Score=47.19 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHHHHHHHHHHhc
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKELWTRICCLQNQ 684 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q 684 (961)
++++-...+.++.++..|... ...++.++.+++.+..++..+..+|...... ....+...+...+.+|-..
T Consensus 319 ~~~~~~~~~~l~~eL~~L~~~----e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~---aA~~l~~~v~~~L~~L~m~ 389 (553)
T PRK10869 319 PEELPQHHQQLLEEQQQLDDQ----EDDLETLALAVEKHHQQALETAQKLHQSRQR---YAKELAQLITESMHELSMP 389 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCC
Confidence 555555666666666555432 2333444444444444444444444433333 5566777777777777664
No 170
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.57 E-value=4 Score=43.42 Aligned_cols=154 Identities=14% Similarity=0.186 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHH
Q 002131 471 LEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYT----EENG-DLRQNLSELG 545 (961)
Q Consensus 471 I~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEele----eELe-eleqeleEl~ 545 (961)
+.+.+.=..+|..-|+++++....+...+.........+..++..++..+..++......- ++|. .+-.....+.
T Consensus 18 ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e 97 (221)
T PF04012_consen 18 LDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLE 97 (221)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3344444588888888888888888888888888888888888888877777777665552 2332 2344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHH
Q 002131 546 EKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT--IAGLRDGFSDQIEKKPALDKYDKHVALLQREQMR 623 (961)
Q Consensus 546 ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt--Ie~LrqEL~eEleke~~vee~ek~Ie~lq~Eler 623 (961)
.....++..++.+......++..+.+++..|..++.....+.-+ .......+...+++- ++......++++...+.+
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~-~~~~a~~~~er~e~ki~~ 176 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASF-SVSSAMDSFERMEEKIEE 176 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CccchHHHHHHHHHHHHH
Confidence 55555566666666666666666666666666666666655554 333333342333332 233344444444444444
Q ss_pred HH
Q 002131 624 LT 625 (961)
Q Consensus 624 Lt 625 (961)
+.
T Consensus 177 ~e 178 (221)
T PF04012_consen 177 ME 178 (221)
T ss_pred HH
Confidence 43
No 171
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.57 E-value=5.4 Score=44.93 Aligned_cols=152 Identities=17% Similarity=0.256 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 002131 488 LAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFR-------AAEADLYCIKR 560 (961)
Q Consensus 488 LeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~q-------eaeEeld~iR~ 560 (961)
|.+++.-|...++..+.+.+.+..++-++...+..-+-.++.+..++...+-.+.++..-|+ .+-..-..+.+
T Consensus 142 lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eE 221 (305)
T PF14915_consen 142 LKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEE 221 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444333333 33333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 561 NFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRV 640 (961)
Q Consensus 561 e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~ 640 (961)
.+..++.+..=+...+..+.+.-...++++......|...+.+- -.+.++++--+.+.-..|...=.-|++.+=.++.
T Consensus 222 RL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L--~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEk 299 (305)
T PF14915_consen 222 RLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKL--QAESEKQVLLLEERNKELINECNHLKERLYQYEK 299 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555566666666666663333322 2223333333333333343334444444444443
Q ss_pred H
Q 002131 641 E 641 (961)
Q Consensus 641 E 641 (961)
|
T Consensus 300 E 300 (305)
T PF14915_consen 300 E 300 (305)
T ss_pred H
Confidence 3
No 172
>PLN02939 transferase, transferring glycosyl groups
Probab=95.56 E-value=5.5 Score=51.32 Aligned_cols=245 Identities=17% Similarity=0.196 Sum_probs=122.0
Q ss_pred CChhHHHHHHhcChHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----------
Q 002131 390 FDVPAMIQTIRILTEEKMSLALEVSGLLQSRIVERASAKEELRMVKA---DLESRTRRLEREKVELQSGL---------- 456 (961)
Q Consensus 390 ~~~~~~~~~i~~~~edRR~i~EEaaGi~Kyk~aerk~t~enL~Ri~~---ELe~QLepLEkQaekAK~yL---------- 456 (961)
+-..+|+++|++-. ....++-+| |-.|-+.|.+|+. .|+.++..||....+.-..+
T Consensus 128 ~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (977)
T PLN02939 128 FQLEDLVGMIQNAE-KNILLLNQA----------RLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHV 196 (977)
T ss_pred ccHHHHHHHHHHHH-hhhHhHHHH----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccc
Confidence 45678999998643 222222211 2245555655433 35556666666555532111
Q ss_pred ---HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 457 ---EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEE 533 (961)
Q Consensus 457 ---EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeE 533 (961)
|.+|....+++......--.-..-|-+.+.-|.+.|..|+..|+.+..++.+..+--+ - +-.++.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~ 265 (977)
T PLN02939 197 EILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEE----R-------VFKLEKE 265 (977)
T ss_pred hhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH----H-------HHHHHHH
Confidence 3334433333333332222223446778888889999999999998888776543321 1 2223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHhh
Q 002131 534 NGDLRQNLSELGEKFRAAEADLY--------CIKRNFEEKEMECKDLQKS----ITRLLRTCSEQEKTIAGLRDGFSDQI 601 (961)
Q Consensus 534 LeeleqeleEl~ee~qeaeEeld--------~iR~e~eEleeei~eleKe----Ia~Lq~~Ik~lEKtIe~LrqEL~eEl 601 (961)
..-+...+.++..++-.+++.+- +.=+.++.++.-+-.+.++ +..|+ +-+.+.+.+..|+.-|.+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 344 (977)
T PLN02939 266 RSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLD-QNQDLRDKVDKLEASLKEAN 344 (977)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhh
Confidence 44444444444444444444332 2222222222222222222 22221 22334444555555552222
Q ss_pred hcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002131 602 EKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLK 657 (961)
Q Consensus 602 eke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq 657 (961)
-.+-+...++...+++.-..++|+.--.++..+++-++.++++.++.+..+..+-.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (977)
T PLN02939 345 VSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESK 400 (977)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 22212222333334444455666666777778888888888888877777655443
No 173
>PF13166 AAA_13: AAA domain
Probab=95.55 E-value=2.6 Score=52.04 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 002131 891 ERDMMWEEVKQY 902 (961)
Q Consensus 891 erd~~~ee~k~l 902 (961)
+-..+|.++..+
T Consensus 615 ~Y~~l~~~l~~~ 626 (712)
T PF13166_consen 615 EYHYLFKELYDF 626 (712)
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 174
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.49 E-value=3.9 Score=48.29 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 630 SLRREIESYRVEVDSLRHENISLLNR 655 (961)
Q Consensus 630 ~LReELEsle~EIEsLReEl~~L~rR 655 (961)
....+|...+.++..++.++.....+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444433
No 175
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.46 E-value=7.7 Score=45.98 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 479 QRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCI 558 (961)
Q Consensus 479 k~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~i 558 (961)
..|.+.|.+|-+-+=..-=|-...+..+..+..-++.+...+.....+.+.+.-++........-++++|...-+..+..
T Consensus 365 nkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnks 444 (527)
T PF15066_consen 365 NKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKS 444 (527)
T ss_pred HHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhH
Confidence 33444444444444333334444445555555555555556666666666666666666666666666666665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEK 588 (961)
....-+...-+.+-+.+|.+|+.-..++++
T Consensus 445 vsqclEmdk~LskKeeeverLQ~lkgelEk 474 (527)
T PF15066_consen 445 VSQCLEMDKTLSKKEEEVERLQQLKGELEK 474 (527)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544444443
No 176
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.44 E-value=3.3 Score=50.26 Aligned_cols=12 Identities=25% Similarity=0.183 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHh
Q 002131 871 LQDSAKELKIMK 882 (961)
Q Consensus 871 lqe~~keis~~~ 882 (961)
-++-..||++|-
T Consensus 533 ~~~r~~EiArml 544 (563)
T TIGR00634 533 GEERVAELARML 544 (563)
T ss_pred ccHHHHHHHHHh
Confidence 334445666654
No 177
>PRK11281 hypothetical protein; Provisional
Probab=95.35 E-value=4.1 Score=53.33 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAE------SRSMITHSEQQLKDLTRRAEQYTEENGDLR 538 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~E------l~~kIe~leeqIe~ltselEeleeELeele 538 (961)
.+|..++.+.+.+...+++++..+..+....+++++.+++.... ....+..+++.+.++..+++..+..+..+.
T Consensus 69 L~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~N 148 (1113)
T PRK11281 69 LALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYN 148 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666655442111 112224466666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 539 QNLSELGEKFRAAEADLYCIKRNFEEKEMECKDL--------QKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 539 qeleEl~ee~qeaeEeld~iR~e~eEleeei~el--------eKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
..+..++.+.+.++..+...+....++.+.+... +-....++.....++..+.-+++++
T Consensus 149 sqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 149 SQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666655544321 1224444444444554455555554
No 178
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.32 E-value=6.7 Score=44.49 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhh
Q 002131 638 YRVEVDSLRHENISLLNRLKGNGKESAALTMKLD 671 (961)
Q Consensus 638 le~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~ 671 (961)
....|..|+.+...|...|...+.+.........
T Consensus 227 ~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~ 260 (310)
T PF09755_consen 227 LSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYL 260 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666677666666666555444443
No 179
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.29 E-value=4.8 Score=46.84 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGLE 457 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yLE 457 (961)
...=|+.|+..++.+...+...++
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~ 195 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLS 195 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555443
No 180
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.27 E-value=1 Score=43.59 Aligned_cols=99 Identities=19% Similarity=0.165 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 487 ELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKE 566 (961)
Q Consensus 487 eLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEle 566 (961)
.|+....+++..+..++.-+...+..+..+-.+.+.++..+..+..+.....+-+.+++.++.++...++.-+.-.-+++
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~ 85 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELE 85 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888888888888888888888888899999999999999999999999999999888888666666888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002131 567 MECKDLQKSITRLLRTCSE 585 (961)
Q Consensus 567 eei~eleKeIa~Lq~~Ik~ 585 (961)
....+++++++.++..+-+
T Consensus 86 ~r~~k~~~dka~lel~l~e 104 (107)
T PF09304_consen 86 SRLLKAQKDKAILELKLAE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHh
Confidence 8888888888888766543
No 181
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.26 E-value=6.3 Score=43.76 Aligned_cols=178 Identities=17% Similarity=0.241 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 477 EEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLY 556 (961)
Q Consensus 477 Ekk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld 556 (961)
-...-...||.|-.+...|.+=++.++..-.. .++.-...++.-.++....+..++..+.++..+...+.+++.
T Consensus 32 tE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~------~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 32 TEDSTALKVRKLLQQYDIYRTAIDILEYSNHK------QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHccChH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666555433221 111112222333333445555566666666666666666654
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHhhhcchhhhh-----hHHHHHHHHHHHHH
Q 002131 557 CIK----RNFEEKEMECKDLQKSITRLLRTCSEQEKT----IAGLRDGFSDQIEKKPALDK-----YDKHVALLQREQMR 623 (961)
Q Consensus 557 ~iR----~e~eEleeei~eleKeIa~Lq~~Ik~lEKt----Ie~LrqEL~eEleke~~vee-----~ek~Ie~lq~Eler 623 (961)
-+. .+|-.+.-.|..+...|..+......--.. +...+..+....... .++ .++.+.-++.-+..
T Consensus 106 ~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k--~~~il~~~~~k~~~~~~~~l~~ 183 (258)
T PF15397_consen 106 FLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEK--KEEILSSAAEKTQSPMQPALLQ 183 (258)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhchHHHHH
Confidence 442 445555555555555555554433222222 222222222222222 222 12222334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002131 624 LTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKE 662 (961)
Q Consensus 624 Lt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne 662 (961)
.+..=..|..++...+.+|+.+.+++..|...++.+...
T Consensus 184 ~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 184 RTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667777888888888888888887777776665443
No 182
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.23 E-value=11 Score=49.67 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------hhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 570 KDLQKSITRLLRTCSEQEKTIAGLRD------GFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVD 643 (961)
Q Consensus 570 ~eleKeIa~Lq~~Ik~lEKtIe~Lrq------EL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIE 643 (961)
.++.++|+.++-..-..++.+..+.+ ...+.+... -...++.-++..+.-+..|...-...=.++.+++.--.
T Consensus 336 ~~l~~~IAdlRl~~f~~~q~~~~l~~i~~~~~~~~~~~t~~-~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~ 414 (1109)
T PRK10929 336 QQLDTEMAQLRVQRLRYEDLLNKQPQLRQIRQADGQPLTAE-QNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVANS 414 (1109)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhccCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788877777777665444432 110111111 01123333444555555555555555555555554444
Q ss_pred HHHHHHHHHHHHhh
Q 002131 644 SLRHENISLLNRLK 657 (961)
Q Consensus 644 sLReEl~~L~rRLq 657 (961)
.|.+....+...|+
T Consensus 415 QL~~~~~~l~~~L~ 428 (1109)
T PRK10929 415 QLEDALKEVNEATH 428 (1109)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 183
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.19 E-value=12 Score=46.48 Aligned_cols=50 Identities=20% Similarity=0.110 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 002131 614 VALLQREQMRLTG---VEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKES 663 (961)
Q Consensus 614 Ie~lq~ElerLt~---~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~ 663 (961)
+.-++.|+++|+. ...+|+..+..++.+...|..++..-.+--+++++-.
T Consensus 277 v~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~ 329 (716)
T KOG4593|consen 277 VGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSLR 329 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 3344445444443 3466778888888888888888877777766665433
No 184
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=95.17 E-value=7.5 Score=44.16 Aligned_cols=67 Identities=19% Similarity=0.064 Sum_probs=34.3
Q ss_pred CCCCCCccchhhHHHHHHhHHhhhhhhcchhhhh--hhcccccCCCChhHHHHHHhcChHHHHHHHHHHhhh
Q 002131 347 GLNSIETEEDEDVELRRRSKEAEGRVMVLSEELE--HETFLHDTGFDVPAMIQTIRILTEEKMSLALEVSGL 416 (961)
Q Consensus 347 ~~~~~~~~~~~d~~l~~~~ke~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~edRR~i~EEaaGi 416 (961)
+++..+.-++.=..|.++.+..++-++-+...+- +-.++.-...- .=.| |..+++.-|+=++|++--
T Consensus 16 ~l~~~~~~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k~~t~~kek--~~~Q-~l~kt~larsKLeelCRe 84 (391)
T KOG1850|consen 16 GLPDAEKVEEKIKKLAESEKDNAELKIKVLDYDKVLQVKDLTEKKEK--RNNQ-ILLKTELARSKLEELCRE 84 (391)
T ss_pred cCCccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHH
Confidence 4455555566666777777776654443322211 11122211111 1134 677777777777777743
No 185
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.12 E-value=0.97 Score=54.60 Aligned_cols=87 Identities=21% Similarity=0.280 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
-++..++..++.++..|.=++.-|.++-..-.+.|--++-=|.+-.+++...++.+.+.--....++-+-.++..+|+++
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeL 186 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSEL 186 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHh
Confidence 44556666666666666666666655544444444444444444444444444333333333333333334444455555
Q ss_pred HHHHHHH
Q 002131 545 GEKFRAA 551 (961)
Q Consensus 545 ~ee~qea 551 (961)
+-++..+
T Consensus 187 KLkltal 193 (861)
T KOG1899|consen 187 KLKLTAL 193 (861)
T ss_pred HHHHHHH
Confidence 4444444
No 186
>PF13166 AAA_13: AAA domain
Probab=95.11 E-value=8.5 Score=47.58 Aligned_cols=8 Identities=38% Similarity=0.447 Sum_probs=3.7
Q ss_pred cccCCCCC
Q 002131 685 GISMLNES 692 (961)
Q Consensus 685 ~lS~~d~n 692 (961)
..|-||.+
T Consensus 536 PISSLD~~ 543 (712)
T PF13166_consen 536 PISSLDHN 543 (712)
T ss_pred CCCCCCHH
Confidence 44444444
No 187
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.10 E-value=3.4 Score=45.01 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=9.0
Q ss_pred hccHHHHHHHhcccCcccc
Q 002131 747 ITSLQTMSALLHEKSSLVA 765 (961)
Q Consensus 747 ~~sl~TIlslL~~k~NV~~ 765 (961)
...|...+.+| ..||..
T Consensus 254 ~~~f~~~v~lL--n~nI~~ 270 (302)
T PF10186_consen 254 RQRFEYAVFLL--NKNIAQ 270 (302)
T ss_pred HHHHHHHHHHH--HHHHHH
Confidence 44455555555 356654
No 188
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.97 E-value=2.8 Score=45.75 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002131 485 VRELAEQNVSLQREVS 500 (961)
Q Consensus 485 lreLeEknvsLqrEIe 500 (961)
+..+...+..++.+|+
T Consensus 29 l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 29 LQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 189
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.89 E-value=0.86 Score=45.01 Aligned_cols=81 Identities=26% Similarity=0.346 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 480 RLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIK 559 (961)
Q Consensus 480 ~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR 559 (961)
++...|+.++-....++.+++.++.....+..+|-.+...++.+ .....++..++..+.+++.+|+.+=+.+...-
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 34444444444444444444444444444444444443333322 22334444555555555555555544443333
Q ss_pred HHHHH
Q 002131 560 RNFEE 564 (961)
Q Consensus 560 ~e~eE 564 (961)
++.++
T Consensus 96 E~veE 100 (120)
T PF12325_consen 96 EEVEE 100 (120)
T ss_pred HHHHH
Confidence 33333
No 190
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=94.81 E-value=1.2 Score=52.95 Aligned_cols=121 Identities=18% Similarity=0.261 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HH-HHH--hhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 435 KADLESRTRRLEREKVELQSGL-----EK-ELD--RRS--SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNE 504 (961)
Q Consensus 435 ~~ELe~QLepLEkQaekAK~yL-----EK-EL~--rrq--nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~lee 504 (961)
..-|...|.+++++....+..- |. .+. ..+ ++++.+++........+++.|...-.++..++.++..+.+
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666655554433 21 111 112 5777888888888888888877777777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 505 REAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADL 555 (961)
Q Consensus 505 Ki~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEel 555 (961)
.|..+..+|..+..+.+.+..-+....+-...+..++.|++++|.+.-..+
T Consensus 241 ql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~ 291 (596)
T KOG4360|consen 241 QLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQML 291 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777766666655555555544444444444444444443333
No 191
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.79 E-value=0.36 Score=54.53 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 520 LKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 520 Ie~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
++.++.+++.+..+.+....-+.++... ....++...+..++..++.+...+.+++..++.....+.+++..++.+.
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~~~-~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLEEE-SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp --------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333311 1112223333444444444444444444444444444444444444443
No 192
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.74 E-value=0.52 Score=53.30 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 430 ELRMVKADLESRTRRLEREKVELQSGL 456 (961)
Q Consensus 430 nL~Ri~~ELe~QLepLEkQaekAK~yL 456 (961)
+...++..++.+++.++.+......++
T Consensus 6 C~~~l~~~l~~~~~~~~~E~~~Y~~fL 32 (314)
T PF04111_consen 6 CTDLLLEQLDKQLEQAEKERDTYQEFL 32 (314)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666655555
No 193
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.67 E-value=14 Score=44.72 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 476 MEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADL 555 (961)
Q Consensus 476 sEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEel 555 (961)
+++++|.+.+.+..+....| ++...+..+..+.++|+.+=..+++.-.....+...+..+...+...++.-...+++.
T Consensus 255 ~~~~~L~~~l~~~~~~l~~L--eld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Ei 332 (570)
T COG4477 255 SRLERLKEQLVENSELLTQL--ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEI 332 (570)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444433 4555566666666666666555554444444444444444444444444433333333
Q ss_pred HHHHH
Q 002131 556 YCIKR 560 (961)
Q Consensus 556 d~iR~ 560 (961)
..++.
T Consensus 333 e~V~~ 337 (570)
T COG4477 333 ERVKE 337 (570)
T ss_pred HHHHH
Confidence 33333
No 194
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.67 E-value=1 Score=49.79 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 509 SRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 509 l~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEK 588 (961)
+-.+|.+++.++++++.+...-.=.| +..+..+...+..+++.+.++..+..+-..|-..|+++++
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQl--------------eSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQL--------------ESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 34456666555555555544444444 4444555555666666666677777777788888888888
Q ss_pred HHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 589 TIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIE 636 (961)
Q Consensus 589 tIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELE 636 (961)
+...+.-++ ..-+.. |..+++.+..-...+++|+++...++.+|+
T Consensus 82 ~rqKlshdl-q~Ke~q--v~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 82 TRQKLSHDL-QVKESQ--VNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHhhHHH-hhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777 333333 555555555444444444444444444443
No 195
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.65 E-value=6.3 Score=40.75 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 562 FEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 562 ~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
|.........+.+.|..++..+..++.+
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444555555555555444443
No 196
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.60 E-value=1.5 Score=43.36 Aligned_cols=95 Identities=20% Similarity=0.315 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
..+.+.|+..+.|+..+++++..|......+..||-.+.....++... ..++..+..++..+......+.+-+-|+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~----~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL----KKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 446677778888888888888888888888888877777666555332 2333444555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002131 545 GEKFRAAEADLYCIKRNFE 563 (961)
Q Consensus 545 ~ee~qeaeEeld~iR~e~e 563 (961)
.++.++++.++..+|.-|.
T Consensus 95 ~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555544444443
No 197
>PF15294 Leu_zip: Leucine zipper
Probab=94.54 E-value=10 Score=42.60 Aligned_cols=151 Identities=15% Similarity=0.195 Sum_probs=75.3
Q ss_pred HHHHHHhHHhhhhhhcchhhhhhhcccccCCCChhHHHHHHhcChHHHHHHHHHHhhhhHHHH-HHhh---hHHHHHHH-
Q 002131 359 VELRRRSKEAEGRVMVLSEELEHETFLHDTGFDVPAMIQTIRILTEEKMSLALEVSGLLQSRI-VERA---SAKEELRM- 433 (961)
Q Consensus 359 ~~l~~~~ke~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~edRR~i~EEaaGi~Kyk~-aerk---~t~enL~R- 433 (961)
.++-+|.|+|+.||--+- .+-|++--|.+..+. .|+....++++.-+ +|=. .|.-=|.|
T Consensus 4 ~kr~~~Lk~Vds~F~Dlk-----~srL~e~t~T~~EV~-----------~~ldgL~~~v~~~vesEL~N~~htn~lllrq 67 (278)
T PF15294_consen 4 SKREQHLKEVDSCFQDLK-----SSRLREDTYTSDEVT-----------EMLDGLQVVVKSEVESELINTSHTNVLLLRQ 67 (278)
T ss_pred hHHHHHHHHHHHhhhHHH-----HHHHHHHhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHhHHHhHHHHHHH
Confidence 467889999999997641 222334445544433 33344456666555 3333 44444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh-hhHHHHH--------HHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGL-EKELDRRS-SDWSFKL--------EKYQME-----EQRLRERVRELAEQNVSLQRE 498 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yL-EKEL~rrq-nE~~~kI--------~~~EsE-----kk~LrERlreLeEknvsLqrE 498 (961)
++..-+.+.-.|...+..+...- =.++.+.. .+|...- -++... ...|...+..|.+.|.+|+..
T Consensus 68 l~~qAek~~lkl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~r 147 (278)
T PF15294_consen 68 LFSQAEKWYLKLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKER 147 (278)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 56655555555555544444332 11111111 1111110 011111 123555666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 499 VSTFNEREAESRSMITHSEQQLKDLTR 525 (961)
Q Consensus 499 Ie~leeKi~El~~kIe~leeqIe~lts 525 (961)
+..++..-..+...-..++.++..++.
T Consensus 148 l~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 148 LKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665555555555555555
No 198
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.53 E-value=11 Score=44.52 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 002131 635 IESYRVEVDSLRHENISLLNRLK 657 (961)
Q Consensus 635 LEsle~EIEsLReEl~~L~rRLq 657 (961)
+.....++..++.++..+...|.
T Consensus 286 ~~~~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 286 LAKVKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666555555554444
No 199
>PRK10869 recombination and repair protein; Provisional
Probab=94.53 E-value=9.9 Score=46.35 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=16.1
Q ss_pred hcChHHHHHHHHHHhhhhH
Q 002131 400 RILTEEKMSLALEVSGLLQ 418 (961)
Q Consensus 400 ~~~~edRR~i~EEaaGi~K 418 (961)
.-.|+.+|.|+++.+|...
T Consensus 136 ll~~~~~~~lLD~~~~~~~ 154 (553)
T PRK10869 136 LLKPEHQKTLLDAYANETS 154 (553)
T ss_pred hcCHHHHHHHHHHhcccHH
Confidence 3689999999999999743
No 200
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.51 E-value=3.3 Score=51.08 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 472 EKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHS---EQQLKDLTRRAEQYTEENGDLRQNLSELGEKF 548 (961)
Q Consensus 472 ~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~l---eeqIe~ltselEeleeELeeleqeleEl~ee~ 548 (961)
.+++++....+.-++-+++++.+++..++.++.++...-. ...+ +..+..-..++-..++...+..+.+..+..+.
T Consensus 94 dklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~ 172 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQL 172 (916)
T ss_pred HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3455666666777788888888888888888877765543 2222 22222222222223333333444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 002131 549 RAAEADLYCIKRNF 562 (961)
Q Consensus 549 qeaeEeld~iR~e~ 562 (961)
+....++..++...
T Consensus 173 qe~naeL~rarqre 186 (916)
T KOG0249|consen 173 EELNAELQRARQRE 186 (916)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 201
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.47 E-value=22 Score=46.17 Aligned_cols=42 Identities=14% Similarity=0.053 Sum_probs=23.3
Q ss_pred hcccccCCCChhHHHH---HHhcChHHHHHHHHHHhhhhHHHHHHhh
Q 002131 382 ETFLHDTGFDVPAMIQ---TIRILTEEKMSLALEVSGLLQSRIVERA 425 (961)
Q Consensus 382 ~~~~~~~~~~~~~~~~---~i~~~~edRR~i~EEaaGi~Kyk~aerk 425 (961)
+.|++-..++.=+|-| .=|+-.++-| +.||.-|-+.=++.-+
T Consensus 284 eelvK~GKLNLVDLAGSENI~RSGA~~~R--ArEAG~INqSLLTLGR 328 (1041)
T KOG0243|consen 284 EELVKIGKLNLVDLAGSENISRSGARNGR--AREAGEINQSLLTLGR 328 (1041)
T ss_pred hhhHhhcccceeeccccccccccccccch--hHHhhhhhHHHHHHHH
Confidence 3445555555555544 2245555554 6788877776664333
No 202
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=14 Score=43.84 Aligned_cols=121 Identities=13% Similarity=0.183 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 471 LEKYQMEEQRLRERVRELAEQNVSLQREVS----TFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGE 546 (961)
Q Consensus 471 I~~~EsEkk~LrERlreLeEknvsLqrEIe----~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~e 546 (961)
+..+++...-+.+..++|+ +...++.++- --++.+..+...+..+..++..++..++..+.-+....-.
T Consensus 257 ~~ales~~sq~~e~~selE-~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~------ 329 (521)
T KOG1937|consen 257 YKALESKRSQFEEQNSELE-KLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQ------ 329 (521)
T ss_pred HHHHHhhhHHHHHHHHHHH-HHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------
Confidence 3334444444444444444 3333333322 2345555555566666666666666665555444432222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcc
Q 002131 547 KFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKK 604 (961)
Q Consensus 547 e~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke 604 (961)
+++.+++..-+-++ -..|.+++.++..+...+...+..-..|+.++ +.+..+
T Consensus 330 ----Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsel-e~lp~d 381 (521)
T KOG1937|consen 330 ----LREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSEL-EKLPDD 381 (521)
T ss_pred ----HHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcCCch
Confidence 22222222222222 35667777777777777777777777777777 555554
No 203
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.39 E-value=12 Score=42.72 Aligned_cols=10 Identities=20% Similarity=0.374 Sum_probs=6.2
Q ss_pred CChhHHHHHH
Q 002131 390 FDVPAMIQTI 399 (961)
Q Consensus 390 ~~~~~~~~~i 399 (961)
|.|..|..-|
T Consensus 70 ~sC~EL~~~I 79 (312)
T smart00787 70 FSCKELKKYI 79 (312)
T ss_pred HHHHHHHHHH
Confidence 4566666655
No 204
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=94.32 E-value=16 Score=44.03 Aligned_cols=75 Identities=12% Similarity=0.044 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHHHH
Q 002131 803 LLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKDE-SINQLQIDLQDSAKELKI 880 (961)
Q Consensus 803 ~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D-~I~~lq~dlqe~~keis~ 880 (961)
.+.+.+..--..+-+++.+....+ ..++..++.+-.++..+..+.-.++.+++=++| .=.....+++....+|+.
T Consensus 391 e~~~~~r~~lekl~~~q~e~~~~l---~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~ 466 (531)
T PF15450_consen 391 EWESDERKSLEKLDQWQNEMEKHL---KEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELAT 466 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 444445555566788888888888 889999999999999999888888888877777 222333344444444443
No 205
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=94.09 E-value=18 Score=43.58 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=23.1
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 002131 849 KLKDLELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEE 891 (961)
Q Consensus 849 k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~ee 891 (961)
++..+-..|.|....|...+..++...+.|...+|-+-.--+.
T Consensus 381 kl~~f~~~~~klG~~L~~a~~~y~~A~~~L~~Grgnli~~a~~ 423 (475)
T PRK10361 381 KMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLAQAEA 423 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3333444555555566666666666666666555544433333
No 206
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=1.5 Score=53.23 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=20.9
Q ss_pred CcchhhhhccCCCCCCCCcccccccccCCCCCCcccc
Q 002131 286 PITIEDIYCGSTNRYSDSNSDVIARKSYSLDDPFETV 322 (961)
Q Consensus 286 ~~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 322 (961)
-|.+.|++|..+ |+.+.+..+..|.-+-+
T Consensus 256 giAvldldGevl--------~~~S~r~~~~~eVve~I 284 (652)
T COG2433 256 GIAVLDLDGEVL--------DLESRRGIDRSEVVEFI 284 (652)
T ss_pred eEEEEecCCcEE--------eeeccccCCHHHHHHHH
Confidence 345678888866 88888888877777633
No 207
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.95 E-value=15 Score=43.21 Aligned_cols=174 Identities=15% Similarity=0.098 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
+++.-++..++-+..-|.+--.-..++..+++.|...+..+-..+.+....-+..-...-.+-+....++..+..-...
T Consensus 218 ~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReas- 296 (502)
T KOG0982|consen 218 IDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREAS- 296 (502)
T ss_pred hhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4444444444433333333333333467777777777777777666665554443333334444444444443333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHH
Q 002131 545 GEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRL 624 (961)
Q Consensus 545 ~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerL 624 (961)
-+...+......+..+..++..-|++|+..|+.+.....+..+.| +.+--- +.+..+.-.+|...+.+.
T Consensus 297 --------le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~L-E~lrlq--l~~eq~l~~rm~d~Lrrf 365 (502)
T KOG0982|consen 297 --------LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLL-EALRLQ--LICEQKLRVRMNDILRRF 365 (502)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 223344555566666667777777777777777766644444444 222111 222223334455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 625 TGVEMSLRREIESYRVEVDSLRHENI 650 (961)
Q Consensus 625 t~~eE~LReELEsle~EIEsLReEl~ 650 (961)
+++++...+=++.+..+++-++...-
T Consensus 366 q~ekeatqELieelrkelehlr~~kl 391 (502)
T KOG0982|consen 366 QEEKEATQELIEELRKELEHLRRRKL 391 (502)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555555555555554433
No 208
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.94 E-value=5.4 Score=50.08 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSM 512 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~k 512 (961)
.++..++..+..+++.-.+++..+.+....++..-+.+.++++++.++
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~ 608 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDK 608 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333333333333333
No 209
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=93.87 E-value=4 Score=50.35 Aligned_cols=23 Identities=13% Similarity=-0.060 Sum_probs=19.7
Q ss_pred HhcChHHHHHHHHHHhhhhHHHH
Q 002131 399 IRILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 399 i~~~~edRR~i~EEaaGi~Kyk~ 421 (961)
....|+.|+..|-++.-+++++.
T Consensus 34 e~~~~~ar~~~~~a~e~~~~lq~ 56 (916)
T KOG0249|consen 34 EHSLPEARKDLIKAEEMNTKLQR 56 (916)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhh
Confidence 34678999999999999999888
No 210
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.81 E-value=15 Score=41.78 Aligned_cols=86 Identities=12% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESY 638 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsl 638 (961)
...-..+..++.-.-..-..++..+..-.......++++ +.+.+. ...+++.-..++...+.-....-.|-.+....
T Consensus 208 ~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Em-ekm~Kk--~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~ 284 (309)
T PF09728_consen 208 KETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEM-EKMSKK--IKKLEKENQTWKSKWEKSNKALIEMAEERQKL 284 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333333333333333333333333344444444 444444 44444444444444444444444444444444
Q ss_pred HHHHHHHHH
Q 002131 639 RVEVDSLRH 647 (961)
Q Consensus 639 e~EIEsLRe 647 (961)
..+++.++.
T Consensus 285 ~~~~~~~~~ 293 (309)
T PF09728_consen 285 EKELEKLKK 293 (309)
T ss_pred HHHHHHHHH
Confidence 444444443
No 211
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=13 Score=44.86 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 475 QMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGD 536 (961)
Q Consensus 475 EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELee 536 (961)
..++...+.....|+++-..+++++...++.+..+++....+..-+....+++..+.--|+.
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEq 391 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQ 391 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 33444444444555555566666666666666666666655544444444443333333333
No 212
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=93.65 E-value=4.3 Score=45.97 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcCCchhhhHhhhhHHHHHHHHHHHh
Q 002131 617 LQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRL--------KGNGKESAALTMKLDKELWTRICCLQN 683 (961)
Q Consensus 617 lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRL--------q~~~ne~~~~~~kl~~El~~~I~~lq~ 683 (961)
+-..+-.|..+.+.|..+|..++.+++..+.......... .++.| .++.++.+.++-.+.|.+++-
T Consensus 217 LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~l~~~~~~En-~d~~~~d~qrdanrqisd~Kf 290 (302)
T PF09738_consen 217 LDVRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGVLGDDEDLEN-TDLHFIDLQRDANRQISDYKF 290 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccccccccc-ccccHHHhhhHHHHHHHHHHH
Confidence 3445667777788888888888877777665544222222 23345 667778888888888877764
No 213
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.58 E-value=10 Score=43.44 Aligned_cols=124 Identities=11% Similarity=0.037 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHH
Q 002131 540 NLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQR 619 (961)
Q Consensus 540 eleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ 619 (961)
.+..+.+..++-+.+.++++..-..+.+++......+.+....++.+|..+.+++++- . .+++
T Consensus 86 glr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn-~----------------~lql 148 (401)
T PF06785_consen 86 GLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREEN-Q----------------CLQL 148 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-H----------------HHHH
Confidence 3344444555555556666666666666666666677777777777776666666653 2 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHH---HHHHHH
Q 002131 620 EQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKEL---WTRICC 680 (961)
Q Consensus 620 ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El---~~~I~~ 680 (961)
.++.+...--++.++-+++..|+.+...-...|....|..=.+....+.+++--| ..+|++
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqD 212 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQD 212 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444444444444444443222 445554
No 214
>PLN02939 transferase, transferring glycosyl groups
Probab=93.53 E-value=32 Score=44.73 Aligned_cols=90 Identities=21% Similarity=0.157 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHH
Q 002131 537 LRQNLSELGEKFRAAEADLYCIKRNFE---EKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKH 613 (961)
Q Consensus 537 leqeleEl~ee~qeaeEeld~iR~e~e---Eleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~ 613 (961)
+-.++.-++++-..++..+..++.++. +..+.+..++|+-+-|+..+.++|..+..-+... .++..- -++..-.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 301 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDV-SKLSPL-QYDCWWEK 301 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhccch-hHHHHHHH
Confidence 344555555555556666555555443 4445566677777777777777777654444443 222211 13445556
Q ss_pred HHHHHHHHHHHHHHH
Q 002131 614 VALLQREQMRLTGVE 628 (961)
Q Consensus 614 Ie~lq~ElerLt~~e 628 (961)
++.+|.-+..++...
T Consensus 302 ~~~~~~~~~~~~~~~ 316 (977)
T PLN02939 302 VENLQDLLDRATNQV 316 (977)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665555433
No 215
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.48 E-value=1.3 Score=46.49 Aligned_cols=66 Identities=23% Similarity=0.295 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 497 REVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNF 562 (961)
Q Consensus 497 rEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~ 562 (961)
.++......+..+...+..++..+..+...+......++.+.+++.-++.++..+++.+..++.+.
T Consensus 109 ~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 109 KELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333333333
No 216
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.47 E-value=6.8 Score=40.61 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhh
Q 002131 530 YTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDK 609 (961)
Q Consensus 530 leeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee 609 (961)
+++-+...+....++-.-.+.++.+++.++.++.+++.++.++-.++..|.........+.......|..=-+.+ +.+
T Consensus 4 i~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~d--ik~ 81 (159)
T PF05384_consen 4 IKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEED--IKE 81 (159)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHH--HHH
Confidence 455666677777777778888888888888888888888888777777777777666666655555551111111 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 610 YDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISL 652 (961)
Q Consensus 610 ~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L 652 (961)
.=.....+|.++.-+...+..|+.....++..+..+..-+...
T Consensus 82 AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierA 124 (159)
T PF05384_consen 82 AYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERA 124 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455666666666666666666666666555555444433
No 217
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=93.43 E-value=14 Score=40.16 Aligned_cols=133 Identities=14% Similarity=0.177 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNER-----EAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQ 539 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeK-----i~El~~kIe~leeqIe~ltselEeleeELeeleq 539 (961)
.+|...+..+.....-++..|...-.....++.+|..+... -.-..-.+..++..+......+..+...+.....
T Consensus 27 l~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~ 106 (240)
T PF12795_consen 27 LSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENS 106 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555433 0111122344555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 540 NLSELGEKFRAAEADLYCIKRNFEEKEMECKDL---------QKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 540 eleEl~ee~qeaeEeld~iR~e~eEleeei~el---------eKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
.+..+......+...+...+....++...+..+ .-....++.....++-.+.-++.++
T Consensus 107 ~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el 173 (240)
T PF12795_consen 107 QLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQEL 173 (240)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555554444432 3333444444444444444444444
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.39 E-value=3.8 Score=48.28 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 618 QREQMRLTGVEMSLRREIESYRVEVDSLRHENISLL 653 (961)
Q Consensus 618 q~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~ 653 (961)
+.-...|.+.++...+.+.+.+.+|..|.+++..|.
T Consensus 413 ~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 413 DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 333344444466666666666666666766666553
No 219
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.37 E-value=28 Score=43.60 Aligned_cols=284 Identities=14% Similarity=0.167 Sum_probs=153.8
Q ss_pred hHHhhhhhhcchhhhhhhcccccCCCChhHHHH------HHhcChHHHHHHHHHHhhhh----H-HHH------------
Q 002131 365 SKEAEGRVMVLSEELEHETFLHDTGFDVPAMIQ------TIRILTEEKMSLALEVSGLL----Q-SRI------------ 421 (961)
Q Consensus 365 ~ke~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~~edRR~i~EEaaGi~----K-yk~------------ 421 (961)
+.|+|.-|.|--.+ .-+++.+|.--.||+ .+..+-.+|-.+.|--|-++ | -|+
T Consensus 751 ~~Ele~~VvVqi~d----Rq~RYSrfPeiPLFGrAAREqrLE~L~~eRD~v~EqhA~~sFDvQK~QRlh~~FsqFvg~HL 826 (1480)
T COG3096 751 VDELEKAVVVKIAD----RQWRYSRFPEIPLFGRAAREQRLESLHAERDVLSERHATLSFDVQKTQRLHQAFSRFIGSHL 826 (1480)
T ss_pred HHHHhCceEEEech----hhhhhhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 45666666554322 235666766555554 44455566666665554432 1 000
Q ss_pred HHhh------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhh----hhHHHHHHHHHHHHHHHH
Q 002131 422 VERA------------SAKEELRMVKADLESRTRRLEREKVELQSGL---EKELDRRS----SDWSFKLEKYQMEEQRLR 482 (961)
Q Consensus 422 aerk------------~t~enL~Ri~~ELe~QLepLEkQaekAK~yL---EKEL~rrq----nE~~~kI~~~EsEkk~Lr 482 (961)
|.-+ .-+..|.|-+.+-+.+-..|..|...+|..+ -+-+-.+. ..+..+++.+......++
T Consensus 827 avAF~~dPE~~~~~~~~~Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L~dRveE~~E~L~~a~ 906 (1480)
T COG3096 827 AVAFEADPEAEIRQLNSRRNELERALSNHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESLADRVEEIRERLDEAQ 906 (1480)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 1111 2334455566666666666667777666665 44444444 556666666666666666
Q ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 002131 483 ERVRELAEQNVSLQ-------------REVSTFNEREAESRSMITHSEQQLKDLTRRAEQYT--------EENGDLRQNL 541 (961)
Q Consensus 483 ERlreLeEknvsLq-------------rEIe~leeKi~El~~kIe~leeqIe~ltselEele--------eELeeleqel 541 (961)
+--+++...-+.|. ..-+.+++....+........+++-.+...++.-. +-|.+--+--
T Consensus 907 e~~~fI~qhG~tls~LEpia~~LqsDPe~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLn 986 (1480)
T COG3096 907 EAARFIQQHGNTLSKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLN 986 (1480)
T ss_pred HHHHHHHHhcchHHhhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcccchhh
Confidence 66666554433322 11222333333333333344444444443332110 1111111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHH
Q 002131 542 SELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQ 621 (961)
Q Consensus 542 eEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~El 621 (961)
+.++.++..++.++...|+++...+.+..+.+..++.|+..-+.--.....+.+++ .++|-- .. ..-.++.+..-
T Consensus 987 ekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl-~d~GV~--AD--~gAeeRA~~RR 1061 (1480)
T COG3096 987 EKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQEL-QDIGVR--AD--SGAEERARIRR 1061 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHhCCC--cC--cchHHHHHHHH
Confidence 45677788888899999999999999999999999999999888888899999999 888743 11 12223334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002131 622 MRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLK 657 (961)
Q Consensus 622 erLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq 657 (961)
..|.+....-|..-..++..+....-+...+.+++.
T Consensus 1062 DELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~r 1097 (1480)
T COG3096 1062 DELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLR 1097 (1480)
T ss_pred HHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444443
No 220
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.25 E-value=36 Score=44.54 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=25.7
Q ss_pred hhHHHHHHhcChHHHHHHHHHHhhhhHHHH
Q 002131 392 VPAMIQTIRILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 392 ~~~~~~~i~~~~edRR~i~EEaaGi~Kyk~ 421 (961)
=..+-.++...|.+|+.||+++.|+-.|..
T Consensus 151 Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~ 180 (1042)
T TIGR00618 151 QGEFAQFLKAKSKEKKELLMNLFPLDQYTQ 180 (1042)
T ss_pred ccchHHHHhCCHHHHHHHHHHHhCcHHHHH
Confidence 334456788999999999999999999986
No 221
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=22 Score=41.76 Aligned_cols=81 Identities=19% Similarity=0.179 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 571 DLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENI 650 (961)
Q Consensus 571 eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~ 650 (961)
.++.+...++..+..++.++..+.+-++.... .. .+..+-.......++|++=+.-++.+|++|+..+.
T Consensus 104 ~leqertq~qq~~e~~erEv~~l~~llsr~~~----~~-------~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~ 172 (542)
T KOG0993|consen 104 NLEQERTQLQQNEEKLEREVKALMELLSRGQY----QL-------DLENEMDKAKEDEEKLRELVTPMEKEINELKKKLA 172 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----hh-------hhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35666666777777777777777776632111 12 23333344455577788888888888888888888
Q ss_pred HHHHHhhhcCCc
Q 002131 651 SLLNRLKGNGKE 662 (961)
Q Consensus 651 ~L~rRLq~~~ne 662 (961)
....+++++...
T Consensus 173 ~aE~~i~El~k~ 184 (542)
T KOG0993|consen 173 KAEQRIDELSKA 184 (542)
T ss_pred hHHHHHHHHHhh
Confidence 888888877743
No 222
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.15 E-value=14 Score=39.65 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 477 EEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQN 540 (961)
Q Consensus 477 Ekk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqe 540 (961)
||-.|-..+++..-....--.||-.+...+.++...+...+.++..+...+..-..+++..+.+
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~E 74 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENE 74 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHH
Confidence 4444444444444444444444444444444444444444444444444333333333333333
No 223
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.09 E-value=3.7 Score=41.33 Aligned_cols=72 Identities=25% Similarity=0.344 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGD 536 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELee 536 (961)
.++..++....++...+...+..|.++...+++++...+.+...+...+..+...+..+..++..+...+..
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888999999999999999989999888888888888888888877777666666555554443
No 224
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=93.06 E-value=17 Score=40.24 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 628 EMSLRREIESYRVEVDSLRHENISL 652 (961)
Q Consensus 628 eE~LReELEsle~EIEsLReEl~~L 652 (961)
++.+-+.++-++.|...||+++..-
T Consensus 159 ke~llesvqRLkdEardlrqelavr 183 (333)
T KOG1853|consen 159 KEVLLESVQRLKDEARDLRQELAVR 183 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777777777777777543
No 225
>PF13514 AAA_27: AAA domain
Probab=92.82 E-value=43 Score=44.22 Aligned_cols=79 Identities=22% Similarity=0.097 Sum_probs=45.1
Q ss_pred hhhhhhcccccCCCChhHHHHH---HhcChHH-HHHHHHHHhhhhHHHH---HHhhhHHHHHHH------HHHHHHHHHH
Q 002131 377 EELEHETFLHDTGFDVPAMIQT---IRILTEE-KMSLALEVSGLLQSRI---VERASAKEELRM------VKADLESRTR 443 (961)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~---i~~~~ed-RR~i~EEaaGi~Kyk~---aerk~t~enL~R------i~~ELe~QLe 443 (961)
.-+...-|-.=.|||...|.++ |.....| ...||.=.+|+.-..- ...+.+. .|-. .|+.+-.++.
T Consensus 82 gg~dr~~f~~iF~~d~~~L~~gG~~l~~~~gdlg~~Lf~agaG~~~l~~~~~~L~~ea~-~Lfkprg~~~~in~~l~~l~ 160 (1111)
T PF13514_consen 82 GGLDRETFEAIFSFDHEELREGGESLLEAEGDLGQLLFSAGAGLGSLSQVLKQLDKEAD-ELFKPRGRKPEINQALKELK 160 (1111)
T ss_pred cCCCHHHHHHHHcCCHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHHHHH-HhhCCCCCChHHHHHHHHHH
Confidence 3445555555569999999887 4433322 3556665566765222 2222222 2322 7777777777
Q ss_pred HHHHHHHHHHHHH
Q 002131 444 RLEREKVELQSGL 456 (961)
Q Consensus 444 pLEkQaekAK~yL 456 (961)
.++.++.++....
T Consensus 161 e~~~~l~~~~~~~ 173 (1111)
T PF13514_consen 161 ELERELREAEVRA 173 (1111)
T ss_pred HHHHHHHHHhccH
Confidence 7777776665544
No 226
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.76 E-value=7.7 Score=46.45 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 002131 478 EQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENG-DLRQNLSELGEKFRAAEADLY 556 (961)
Q Consensus 478 kk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELe-eleqeleEl~ee~qeaeEeld 556 (961)
...|++++..++++|+.+..+...+... +--.+..+..+. ...+++.....+.....+++.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~E------------------t~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~ 222 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTE------------------TLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQ 222 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhh------------------hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777776666555444322 222333333443 455566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 557 CIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIE 636 (961)
Q Consensus 557 ~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELE 636 (961)
..-.+.....+++.++...|..++..+..+-.+.+.+-+-| .....-...++.+..+|+.+..
T Consensus 223 ~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L-----------------q~~~da~~ql~aE~~EleDkyA 285 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHL-----------------QAYKDAQRQLTAELEELEDKYA 285 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----------------HHHHhhHHHHHHHHHHHHHHHH
Confidence 66666777777777777777777766665554443333333 2233334445555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002131 637 SYRVEVDSLRHENISLL 653 (961)
Q Consensus 637 sle~EIEsLReEl~~L~ 653 (961)
.|..+..+-.+++..+.
T Consensus 286 E~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 286 ECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 66655555555555544
No 227
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.68 E-value=3.8 Score=47.44 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREA 507 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~ 507 (961)
-+|...+.....-......-+-....+..++..+|+..-++|.
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888887777777777777777776666666665554443
No 228
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=92.64 E-value=44 Score=43.93 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=19.8
Q ss_pred hhhHHHHHHhHHhhhhhhcchhhhh
Q 002131 356 DEDVELRRRSKEAEGRVMVLSEELE 380 (961)
Q Consensus 356 ~~d~~l~~~~ke~~~~~~~~~~~~~ 380 (961)
..-..|..|+|++...+-.+-.++.
T Consensus 184 ~~~~~l~er~k~~~~~l~~l~~~l~ 208 (1047)
T PRK10246 184 QISAMVFEQHKSARTELEKLQAQAS 208 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5567888899999988888777764
No 229
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=92.36 E-value=14 Score=45.40 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 435 KADLESRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMIT 514 (961)
Q Consensus 435 ~~ELe~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe 514 (961)
-.+++.++.+|+..++-+.... .=|..+=..--.||+.+|.=+...++.+..-+|....----++.++.+.-++..++.
T Consensus 106 ~~~yQerLaRLe~dkesL~LQv-svLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevS 184 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQV-SVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVS 184 (861)
T ss_pred chHHHHHHHHHhcchhhheehH-HHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 3567777778877666554332 001111123344666666666666666666555544444444666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 002131 515 HSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIK-RNFEEKEMECKDLQKS-------ITRLLRTCSEQ 586 (961)
Q Consensus 515 ~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR-~e~eEleeei~eleKe-------Ia~Lq~~Ik~l 586 (961)
+++.++..++.+.-+.++ ++...+..++.+. ..+.++.++..+.+.. ++.|+.+...-
T Consensus 185 eLKLkltalEkeq~e~E~--------------K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK 250 (861)
T KOG1899|consen 185 ELKLKLTALEKEQNETEK--------------KLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEK 250 (861)
T ss_pred HhHHHHHHHHHHhhhHHH--------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhh
Confidence 666655555544433333 3333333333332 2244555555555544 45555555555
Q ss_pred HHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 587 EKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRV 640 (961)
Q Consensus 587 EKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~ 640 (961)
+.++..+...+...+-.+ -+...-+.+++++-++.|-..-++--..|++++.
T Consensus 251 ~~e~~rl~~~lv~~~~~d--~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~ 302 (861)
T KOG1899|consen 251 NDEEMRLLRTLVQRLMAD--GEHKSLRDNTLKNALESLMRANEQKDRFIESLRN 302 (861)
T ss_pred hhHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHH
Confidence 555555555543444333 2233334445555555554444444444444333
No 230
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=92.32 E-value=18 Score=45.47 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=19.6
Q ss_pred HHhHHhhhhhhcchhhhhhhcccc
Q 002131 363 RRSKEAEGRVMVLSEELEHETFLH 386 (961)
Q Consensus 363 ~~~ke~~~~~~~~~~~~~~~~~~~ 386 (961)
.++.+|=+...+-+.+|..+++.-
T Consensus 330 ~~A~eAAe~lkiTa~dL~~lGiiD 353 (762)
T PLN03229 330 KAAPKAAEKLRITAQELCRLQIAD 353 (762)
T ss_pred ccHHHHHHHcCCCHHHHHhCCCCe
Confidence 356788888899999999998764
No 231
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.23 E-value=3.5 Score=44.94 Aligned_cols=57 Identities=11% Similarity=0.061 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 533 ENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 533 ELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
+|......++....-+.+++.+++.+..+.....+++..++.+|..+...|+..+..
T Consensus 19 ~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 19 EILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444555555555555555555555555555555554444444333
No 232
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=92.11 E-value=13 Score=46.56 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 485 VRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKD 522 (961)
Q Consensus 485 lreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ 522 (961)
+.+.-.+..++..++..+...+....+.+.+....++.
T Consensus 170 ~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~ 207 (670)
T KOG0239|consen 170 LDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS 207 (670)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444555556666666666666665555555444444
No 233
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.07 E-value=9 Score=41.79 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=47.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 457 EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGD 536 (961)
Q Consensus 457 EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELee 536 (961)
++..+.+.+.|......+..++..+..++..|+..+..++..++..++++..+...|+.++.....+..-+..+-+.|+.
T Consensus 37 ~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 37 AQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444556666666666666666666666666666666666666666666666666655555555555555555554
Q ss_pred HH
Q 002131 537 LR 538 (961)
Q Consensus 537 le 538 (961)
+-
T Consensus 117 ~v 118 (251)
T PF11932_consen 117 FV 118 (251)
T ss_pred HH
Confidence 33
No 234
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=91.89 E-value=31 Score=41.58 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=9.4
Q ss_pred cCCCCChHHHHHHHHHHh
Q 002131 687 SMLNESTQLCSQLLEFIK 704 (961)
Q Consensus 687 S~~d~n~~lm~KLL~~IK 704 (961)
-+||+-. ...+|+..=
T Consensus 203 G~WGE~q--LerILE~sG 218 (475)
T PRK10361 203 GNWGEVV--LTRVLEASG 218 (475)
T ss_pred cchHHHH--HHHHHHHhC
Confidence 4677762 566666553
No 235
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=91.88 E-value=9.9 Score=39.58 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhhcCCchhhhHhhhhHHH
Q 002131 644 SLRHENISLLNRLKGNGKESAALTMKLDKEL 674 (961)
Q Consensus 644 sLReEl~~L~rRLq~~~ne~~~~~~kl~~El 674 (961)
..+++...+..+++++.++.+..+..+..+|
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~i 147 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEI 147 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555444444443333
No 236
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.87 E-value=12 Score=41.02 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 515 HSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLR 594 (961)
Q Consensus 515 ~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~Lr 594 (961)
.++.++..++.+......+|...+.....+.++...+ ..+-..+.....+++..+.+|.........+...|.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~a-------eeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le 81 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQA-------EEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLE 81 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444333333333333333 444445555555555555565555555555554454
Q ss_pred hhh
Q 002131 595 DGF 597 (961)
Q Consensus 595 qEL 597 (961)
+++
T Consensus 82 ~e~ 84 (246)
T PF00769_consen 82 QEL 84 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 237
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.84 E-value=10 Score=41.74 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 477 EEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLY 556 (961)
Q Consensus 477 Ekk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld 556 (961)
+.....+.+..|+++...++.+-..++.+..++...+..|..+......+...+..++..+...+..+.........+..
T Consensus 27 ~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~ 106 (246)
T PF00769_consen 27 ALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAE 106 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002131 557 CIKRNFEEKEMECKDLQKSI 576 (961)
Q Consensus 557 ~iR~e~eEleeei~eleKeI 576 (961)
.++.++...+.....+...+
T Consensus 107 ~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 107 ELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444443
No 238
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=91.82 E-value=6.7 Score=48.90 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=14.3
Q ss_pred cccCCCC---ChHH----HHHHHHHHh-ccccccc
Q 002131 685 GISMLNE---STQL----CSQLLEFIK-GKAGQLS 711 (961)
Q Consensus 685 ~lS~~d~---n~~l----m~KLL~~IK-~k~~~~~ 711 (961)
.|+|-++ +--+ ..+|-..|+ .+++|.=
T Consensus 407 TyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y 441 (670)
T KOG0239|consen 407 TYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKY 441 (670)
T ss_pred cccccCCCcccCCccHHHHHHHHHHHHhhccCceE
Confidence 5677774 2112 345556666 4556754
No 239
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.72 E-value=3.8 Score=44.68 Aligned_cols=72 Identities=17% Similarity=0.268 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002131 848 HKLKDLELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKK 919 (961)
Q Consensus 848 ~k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ 919 (961)
+-+.+++..|+.-.+.-..+-.+|+....+|..+++++.....+++.+.+.+..+-+.|.-++.+|+.+.+.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444445555677777788888888888888888888888888877888888877777766
No 240
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.67 E-value=22 Score=44.28 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhh--------------cchhhhhhHHHHHHHHHHHHHHH
Q 002131 560 RNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIE--------------KKPALDKYDKHVALLQREQMRLT 625 (961)
Q Consensus 560 ~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEle--------------ke~~vee~ek~Ie~lq~ElerLt 625 (961)
++++++...+.+|+++...=...+.....+|..|-..|.-.+. +.++.--....++++..-+..|.
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~ 239 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLK 239 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHH
Confidence 4444455555555555555445555555554444444322222 11122223344445555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002131 626 GVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKE 662 (961)
Q Consensus 626 ~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne 662 (961)
..+.+.-+. +..|..++-.|=++|+--..+
T Consensus 240 ~~k~qr~~k-------l~~l~~~~~~LWn~l~ts~Ee 269 (660)
T KOG4302|consen 240 EEKKQRLQK-------LQDLRTKLLELWNLLDTSDEE 269 (660)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHhccCCHHH
Confidence 444444444 444566666665555544443
No 241
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.54 E-value=25 Score=38.66 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 523 LTRRAEQYTEENGDLRQNLSELGEKF 548 (961)
Q Consensus 523 ltselEeleeELeeleqeleEl~ee~ 548 (961)
+......+..++..++.-+...+..|
T Consensus 144 f~~~~~~Ae~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 144 FTPQRQNAEDELKEAEDLLSRVQKWF 169 (264)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333333
No 242
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.44 E-value=24 Score=40.47 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 485 VRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGE 546 (961)
Q Consensus 485 lreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~e 546 (961)
...|.-++.+|..++.....-+...+..+.+++.-+-+++++-..++..|+.+..+..|+.+
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekee 162 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEE 162 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHH
Confidence 34444555555555555555555555555555444444444444444444444443333333
No 243
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=91.43 E-value=10 Score=41.26 Aligned_cols=106 Identities=14% Similarity=0.230 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh---hhHhhhcchhhhhhHHHHHHHHHHHHH
Q 002131 548 FRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT-IAGLRDG---FSDQIEKKPALDKYDKHVALLQREQMR 623 (961)
Q Consensus 548 ~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt-Ie~LrqE---L~eEleke~~vee~ek~Ie~lq~Eler 623 (961)
+..++..+..++............++.++..++.....++.. ...|..+ |..+.-.. ...++..+...+..+..
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~--~~~le~~~~~~~~~~~~ 110 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEE--KQSLEDLAKALEAELQQ 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 344444455555556666666666666666666666666666 4444444 22222222 44455566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 624 LTGVEMSLRREIESYRVEVDSLRHENISLLNR 655 (961)
Q Consensus 624 Lt~~eE~LReELEsle~EIEsLReEl~~L~rR 655 (961)
+....+.|+..+..++..|..++.....+.-+
T Consensus 111 ~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 111 AEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666555444
No 244
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=91.39 E-value=0.28 Score=55.58 Aligned_cols=135 Identities=18% Similarity=0.227 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 467 WSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGE 546 (961)
Q Consensus 467 ~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~e 546 (961)
+...+..-..+.--+++||..|+-....|.+-|..+..++..+...+..+.-.+...+.++..+...+..++..+..+..
T Consensus 19 lTss~s~s~GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lss 98 (326)
T PF04582_consen 19 LTSSISTSPGDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSS 98 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555667778889999999999999888888888888888888888877777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhh
Q 002131 547 KFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIE 602 (961)
Q Consensus 547 e~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEle 602 (961)
....+...+.....-+..++..+..+.-+|..|+..+..+.-.|..|++++ +.++
T Consensus 99 sVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV-~~LE 153 (326)
T PF04582_consen 99 SVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRV-KALE 153 (326)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred hHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHH-HHHh
Confidence 777766666666666666666666666666666666666666666666666 4444
No 245
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.32 E-value=35 Score=41.89 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHHHHHHHHHHhc
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKELWTRICCLQNQ 684 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q 684 (961)
++++-...++++.++..|....+ .++.++.++..++.++...-..|-..... ...+|.+.+...+..|.++
T Consensus 320 ~~~l~~~~~~~~~el~~L~~~~~----~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~---~A~~L~~~v~~eL~~L~Me 390 (557)
T COG0497 320 IEDLLEYLDKIKEELAQLDNSEE----SLEALEKEVKKLKAELLEAAEALSAIRKK---AAKELEKEVTAELKALAME 390 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCC
Confidence 55555555666666666654433 33445555555555555555544443333 4566777777777777664
No 246
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.17 E-value=29 Score=38.73 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=37.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 457 EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREA 507 (961)
Q Consensus 457 EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~ 507 (961)
.+.++..+.++..--.+.+++...|+.++..|+.+....+.++..+..-..
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD 112 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD 112 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666666666677777778888888888888888888777766554
No 247
>PRK12704 phosphodiesterase; Provisional
Probab=90.99 E-value=34 Score=41.67 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=3.8
Q ss_pred cccCCCCC
Q 002131 685 GISMLNES 692 (961)
Q Consensus 685 ~lS~~d~n 692 (961)
.+|.||+-
T Consensus 254 ~ls~~~~~ 261 (520)
T PRK12704 254 ILSGFDPI 261 (520)
T ss_pred EEecCChh
Confidence 45555543
No 248
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.96 E-value=10 Score=46.32 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhcCCchhhhHhhhhHHHHHHHHHHHhc
Q 002131 620 EQMRLTGVEMSLRREIESYRVEVDSLRHENISLL--NRLKGNGKESAALTMKLDKELWTRICCLQNQ 684 (961)
Q Consensus 620 ElerLt~~eE~LReELEsle~EIEsLReEl~~L~--rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q 684 (961)
++..+......|+.+|..-...++.|+.++..+. +.|--.|.. .-+..+++--+..|..+...
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g--~pvk~ve~~t~~~Ie~~e~~ 539 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKG--TPVKVVEKLTLEAIEEAEEE 539 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC--cceehhhhhhHHHHHhHHHh
Confidence 3334444455555556666666666666666555 444444443 22233333336666666665
No 249
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.91 E-value=44 Score=40.42 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 571 DLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENI 650 (961)
Q Consensus 571 eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~ 650 (961)
++.+.-+-+..++..-+.+|..++..+.... ...+-.+++.++..+-.-+. +-+..|+.+..+...|.=.+.
T Consensus 352 e~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~-~~s~~~elE~rl~~lt~~Li-------~KQ~~lE~l~~ek~al~lqlE 423 (511)
T PF09787_consen 352 ELSRQKSPLQLKLKEKESEIQKLRNQLSARA-SSSSWNELESRLTQLTESLI-------QKQTQLESLGSEKNALRLQLE 423 (511)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHh-ccCCcHhHHHHHhhccHHHH-------HHHHHHHHHHhhhhhccccHH
Confidence 3344445555556666666777777774433 22234455554444433333 334444455555555555555
Q ss_pred HHHHHhh
Q 002131 651 SLLNRLK 657 (961)
Q Consensus 651 ~L~rRLq 657 (961)
.+...++
T Consensus 424 rl~~~l~ 430 (511)
T PF09787_consen 424 RLETQLK 430 (511)
T ss_pred HHHHHHH
Confidence 5555555
No 250
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=90.77 E-value=5.7 Score=44.56 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 442 TRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLK 521 (961)
Q Consensus 442 LepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe 521 (961)
+..+..-++.+-...+--|+.+.+++...+++..+..+.|++++..|=.+...++.+++.+..+-+.+..-+.+.
T Consensus 232 M~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~r----- 306 (384)
T KOG0972|consen 232 MNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSR----- 306 (384)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-----
Confidence 334444443333333667778888899999999999999999999998888888888888877777666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 522 DLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLL 580 (961)
Q Consensus 522 ~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq 580 (961)
+..+.++.++++.++++.++....-..- .-+-+||.-+..++++..++.=+|..+.
T Consensus 307 --T~~L~eVm~e~E~~KqemEe~G~~msDG-aplvkIkqavsKLk~et~~mnv~igv~e 362 (384)
T KOG0972|consen 307 --TETLDEVMDEIEQLKQEMEEQGAKMSDG-APLVKIKQAVSKLKEETQTMNVQIGVFE 362 (384)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcccccCC-chHHHHHHHHHHHHHHHHhhhhheehhh
Confidence 5555556666666666555544332221 2334455555555555555555554443
No 251
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.60 E-value=9.2 Score=41.72 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 554 DLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 554 eld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
..+.+..+-..+..++..+++++..++..+..+++.+..+++++
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el 86 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQEL 86 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444333
No 252
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.56 E-value=70 Score=42.13 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=24.1
Q ss_pred HHHHHHhcChHHHHHHHHHHhhhhHHHH
Q 002131 394 AMIQTIRILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 394 ~~~~~i~~~~edRR~i~EEaaGi~Kyk~ 421 (961)
.+-.++...|.||+.||+++.|+-+|.-
T Consensus 157 ~f~~fl~a~~~eR~~il~~l~g~~~y~~ 184 (1047)
T PRK10246 157 QFAAFLNAKPKERAELLEELTGTEIYGQ 184 (1047)
T ss_pred cHHHHHhCChHHHHHHHHHHhCcHHHHH
Confidence 3346788999999999999999999954
No 253
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=90.42 E-value=46 Score=39.72 Aligned_cols=120 Identities=11% Similarity=-0.011 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
+.+..++...+-+++-+-|.++-..-+..-.+.|+..++.+..-.. + ....+++-.-+.... -+-+-
T Consensus 234 ~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~----------l~~keeL~~s~~~e~-~i~qs 300 (554)
T KOG4677|consen 234 LIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--F----------LDRKEELALSHYREH-LIIQS 300 (554)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----------hhhHHHHHHHHHHHh-hccCC
Confidence 5577777777777766666555555555555555554444443321 1 111111111111000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 545 GEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 545 ~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
.+.....+.++..+|-+..--.+++..++-.|..|+.++..+|-.+.+|+...
T Consensus 301 ~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~ 353 (554)
T KOG4677|consen 301 PDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAG 353 (554)
T ss_pred CCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 11122223444444555555555556666666666666666666665555554
No 254
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=90.07 E-value=35 Score=37.90 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=23.6
Q ss_pred HHHHHhh-hHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 002131 419 SRIVERA-SAKEELRM-------VKADLESRTRRLEREKVELQSG 455 (961)
Q Consensus 419 yk~aerk-~t~enL~R-------i~~ELe~QLepLEkQaekAK~y 455 (961)
..+-.++ .+++.|.- |-+|++.||..|+.+..++...
T Consensus 23 ~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~ 67 (333)
T KOG1853|consen 23 HEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETR 67 (333)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445 66666654 7788888888777766655443
No 255
>PRK10698 phage shock protein PspA; Provisional
Probab=90.04 E-value=32 Score=37.34 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHH
Q 002131 471 LEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTE----ENGD-LRQNLSELG 545 (961)
Q Consensus 471 I~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEelee----ELee-leqeleEl~ 545 (961)
+.+.+.=.+.++.=++++.+..+.+...++..-.....+..++..+...+..........-. +|.. +........
T Consensus 19 ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~ 98 (222)
T PRK10698 19 LEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLT 98 (222)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44444555666666777777777777777766666666666666666666665555443321 2211 112222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 546 EKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 546 ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
.....++..++........++..+..++..|..++.....+--+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR 142 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLR 142 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555444
No 256
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=89.92 E-value=33 Score=43.25 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhcCCchhh----hHhhhhHHHHHHHHHH
Q 002131 644 SLRHENISLLNRLKGNGKESAA----LTMKLDKELWTRICCL 681 (961)
Q Consensus 644 sLReEl~~L~rRLq~~~ne~~~----~~~kl~~El~~~I~~l 681 (961)
.|++.+..|...+...++-|+. -+..|+++|+.+|...
T Consensus 670 ~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a 711 (762)
T PLN03229 670 DLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEA 711 (762)
T ss_pred hHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3566666666666667766554 3555666665555443
No 257
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=89.88 E-value=50 Score=40.23 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=3.3
Q ss_pred HHHHHhhhh
Q 002131 457 EKELDRRSS 465 (961)
Q Consensus 457 EKEL~rrqn 465 (961)
++++..+..
T Consensus 57 eeE~~~~R~ 65 (514)
T TIGR03319 57 KEEVHKLRA 65 (514)
T ss_pred HHHHHHHHH
Confidence 333333333
No 258
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.60 E-value=20 Score=42.64 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=16.0
Q ss_pred CCCcCCCCCCCCC---------CCCCCCCccccccc
Q 002131 207 PPRVQYTAPTSPV---------DSVKGKPKSHSFRE 233 (961)
Q Consensus 207 ppr~~~~~p~~~~---------~~~~~~~~~~~~~~ 233 (961)
||-..---|+-|. +++-..+=.|+|--
T Consensus 168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~ 203 (493)
T KOG0804|consen 168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHC 203 (493)
T ss_pred CCCCcccCCCcchhHhhcCccccceeeeecccccch
Confidence 5666666677665 12344556788765
No 259
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=89.56 E-value=35 Score=37.20 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002131 628 EMSLRREIESYRVEVDSLRHENISLLNRLK 657 (961)
Q Consensus 628 eE~LReELEsle~EIEsLReEl~~L~rRLq 657 (961)
+..|..+.+.....=+.+-+-++.....||
T Consensus 210 k~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ 239 (247)
T PF06705_consen 210 KNALALESQEREQSDDDIVQALNHYTKALQ 239 (247)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444
No 260
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=89.44 E-value=52 Score=38.92 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=43.1
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 601 IEKKPALDKYDKHVALLQREQMRLTG----VEMSLRREIESYRVEVDSLRHENISLLNRLKG 658 (961)
Q Consensus 601 leke~~vee~ek~Ie~lq~ElerLt~----~eE~LReELEsle~EIEsLReEl~~L~rRLq~ 658 (961)
++++ .......+|..++.+++||.. .+..-.+++..+..|-...|+++..+.++|+.
T Consensus 243 ~~gD-~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~ 303 (552)
T KOG2129|consen 243 VHGD-EAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLIN 303 (552)
T ss_pred ccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555 445566778888888888754 35566778888999999999999999988874
No 261
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=89.41 E-value=54 Score=39.12 Aligned_cols=73 Identities=4% Similarity=-0.077 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 525 RRAEQYTEENGDLRQNLSELGEKFRAAEADLY----CIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 525 selEeleeELeeleqeleEl~ee~qeaeEeld----~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
.+++++.=++.--...+.-++.++-.++.++. +.+..-.....+++..|-+++...+.+..++-..+.++.+.
T Consensus 309 ~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~ 385 (554)
T KOG4677|consen 309 KEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHET 385 (554)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHH
Confidence 33444433333333333333444433333333 22334445566677777777777777777777777777765
No 262
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=89.20 E-value=12 Score=39.69 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=35.3
Q ss_pred HHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 457 EKELDRRS--SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVST-FNEREAESRSMITHSEQQLKDLTRR 526 (961)
Q Consensus 457 EKEL~rrq--nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~-leeKi~El~~kIe~leeqIe~ltse 526 (961)
.+.++..+ .++..+|..++.+...|..++.+|..+...+....+. .....+...++|+.+..+..++...
T Consensus 113 rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 113 RKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 5556666666666666666666665555555544443 2333333444444444444444333
No 263
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=89.19 E-value=38 Score=37.03 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 467 WSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQ 529 (961)
Q Consensus 467 ~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEe 529 (961)
+...|.+.+.=++.++..|+..+.....+...++..-.....+..++..+....+.+......
T Consensus 15 ~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~ 77 (225)
T COG1842 15 INELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAEL 77 (225)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566888888888888888888888888888888888887777777777666543
No 264
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=89.16 E-value=62 Score=39.46 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHH-----------------------HHHHHHHHhhhh
Q 002131 803 LLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVT-----------------------HKLKDLELQMLK 859 (961)
Q Consensus 803 ~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~-----------------------~k~k~LE~q~~K 859 (961)
.+...|..=+.+..+.+..+.++...--..|....++...+.+++ |++.+|..++..
T Consensus 386 ~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse 465 (570)
T COG4477 386 EIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSE 465 (570)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhh
Confidence 444444444444444444444444333344444555555555555 777777777666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002131 860 KDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNV 915 (961)
Q Consensus 860 ~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~ 915 (961)
+-=+|.+.-......+..|..+......|.++ ..+.+++-||.-+|-.-+.+|..
T Consensus 466 ~pinm~~v~~~v~~a~~~m~~l~~~t~e~ve~-a~LaE~lIQY~NRYRs~~~~v~~ 520 (570)
T COG4477 466 VPINMEAVSALVDIATEDMNTLEDETEEVVEN-AVLAEQLIQYGNRYRSRNAEVAK 520 (570)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHH
Confidence 66688888888888888888877777666655 34567777777777666655544
No 265
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.05 E-value=56 Score=38.79 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=10.6
Q ss_pred ChHHHHHHHHHHhhhhHHHH
Q 002131 402 LTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 402 ~~edRR~i~EEaaGi~Kyk~ 421 (961)
+|+-+|..+. .|||+-|=+
T Consensus 106 kPes~Rtq~~-LSavvNfa~ 124 (446)
T KOG4438|consen 106 KPESSRTQRF-LSAVVNFAL 124 (446)
T ss_pred CccHHHHHHH-HHHHHHHHH
Confidence 5666665443 466666544
No 266
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=89.04 E-value=23 Score=34.31 Aligned_cols=90 Identities=21% Similarity=0.315 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 464 SSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSE 543 (961)
Q Consensus 464 qnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleE 543 (961)
+..+..+...++.....+..+-..|..+...|+..+..+..=+.+...+...-....+...........+|..+...+..
T Consensus 13 ~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~ 92 (126)
T PF13863_consen 13 QLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEE 92 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555555555554444444444444444444444444444444
Q ss_pred HHHHHHHHHH
Q 002131 544 LGEKFRAAEA 553 (961)
Q Consensus 544 l~ee~qeaeE 553 (961)
++.....+.+
T Consensus 93 l~~~~~k~e~ 102 (126)
T PF13863_consen 93 LKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHH
Confidence 4444333333
No 267
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.84 E-value=3.4 Score=37.11 Aligned_cols=62 Identities=23% Similarity=0.250 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002131 863 SINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLD 924 (961)
Q Consensus 863 ~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Le 924 (961)
.|..|+.++.-....++.+...++.|..+||..-..+...-..+..++.|+..++++++...
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57888999999999999999999999999999999999999999999999999999866543
No 268
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=88.47 E-value=23 Score=38.01 Aligned_cols=96 Identities=16% Similarity=0.244 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHhhhcchh---hhhhHHHHHHHHHHHHHHHHHH
Q 002131 553 ADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT-IAGLRDGFSDQIEKKPA---LDKYDKHVALLQREQMRLTGVE 628 (961)
Q Consensus 553 Eeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt-Ie~LrqEL~eEleke~~---vee~ek~Ie~lq~ElerLt~~e 628 (961)
..+..++..+.........+++++..+...+..++.. ...+..+= +.+-.. . ...+...+..++..+..+....
T Consensus 38 ~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~-EdLAr~-Al~~k~~~~~~~~~l~~~~~~~~~~v 115 (219)
T TIGR02977 38 DTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGR-EDLARA-ALIEKQKAQELAEALERELAAVEETL 115 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666677777777777777766 44455443 333322 1 2223334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002131 629 MSLRREIESYRVEVDSLRHENI 650 (961)
Q Consensus 629 E~LReELEsle~EIEsLReEl~ 650 (961)
.+|+..|..++.++...+....
T Consensus 116 ~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 116 AKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333
No 269
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=88.37 E-value=44 Score=36.75 Aligned_cols=51 Identities=14% Similarity=0.313 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 471 LEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLK 521 (961)
Q Consensus 471 I~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe 521 (961)
+..+..+...|.+++.....+-..+.........+-..+...|..+...|.
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~ 104 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQ 104 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333333333333333333333333
No 270
>PRK00106 hypothetical protein; Provisional
Probab=88.30 E-value=72 Score=39.14 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=8.2
Q ss_pred cccCCCCChHHHHHHHHHHh
Q 002131 685 GISMLNESTQLCSQLLEFIK 704 (961)
Q Consensus 685 ~lS~~d~n~~lm~KLL~~IK 704 (961)
|....++. .-++|-.++
T Consensus 326 g~~~~~~e---~~~~lg~l~ 342 (535)
T PRK00106 326 GAPNLHPD---LIKIMGRLQ 342 (535)
T ss_pred CCCCCCHH---HHHHHHHHh
Confidence 44444444 445555555
No 271
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=88.28 E-value=39 Score=36.00 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 427 AKEELRMVKADLESRTRRLEREKVELQSG 455 (961)
Q Consensus 427 t~enL~Ri~~ELe~QLepLEkQaekAK~y 455 (961)
...=|...|.+++..+..++.....+...
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~ 52 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMAN 52 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333335555555555555544444333
No 272
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.98 E-value=88 Score=39.74 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 510 RSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 510 ~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
.-++..+..-...++..+.+....++-++...+|+....+..+++-..++..|.+++.++.+.-+.- +-+
T Consensus 426 n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~----------d~e 495 (861)
T PF15254_consen 426 NLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQF----------DIE 495 (861)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------HHH
Confidence 3344444444444444444444444444444444444444444444444555554444433322110 011
Q ss_pred HHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 590 IAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNR 655 (961)
Q Consensus 590 Ie~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rR 655 (961)
++++.-+ +++....++.++-.++....+-..|.-.|.+.+.||.-|++-.-.|..-
T Consensus 496 ~~rik~e----------v~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~S 551 (861)
T PF15254_consen 496 TTRIKIE----------VEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNS 551 (861)
T ss_pred HHHHHHH----------HHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 3333444556666666666667778888888888888777654444433
No 273
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.92 E-value=29 Score=41.66 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 476 MEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAA 551 (961)
Q Consensus 476 sEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qea 551 (961)
.+-+..+.||+.+.++...|+..-+..-.||.+++.+..+|...|-++--.++.++.-=..+...-++++.+++.+
T Consensus 348 q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtl 423 (508)
T KOG3091|consen 348 QEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTL 423 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHH
Confidence 3344444455555555555554445555555555555555555555444444444433333333333444444433
No 274
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=87.82 E-value=14 Score=46.32 Aligned_cols=41 Identities=5% Similarity=0.126 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNER 505 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeK 505 (961)
..+..+....+.-...+++|+..+..+....+..++.+.++
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666666665554
No 275
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.72 E-value=10 Score=42.39 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 500 STFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRL 579 (961)
Q Consensus 500 e~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~L 579 (961)
-.+..++++..+++...+..|..|+.++..++++--+-+=--.|.+--+.+|+.++.++|.-++..+..+.+--|-|-.+
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKY 150 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKY 150 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Confidence 34445555555555555555555554444444443332222333344444454444455555555544444445555555
Q ss_pred HHHHHHHHHHHHHH
Q 002131 580 LRTCSEQEKTIAGL 593 (961)
Q Consensus 580 q~~Ik~lEKtIe~L 593 (961)
-..|+-+.+..+.|
T Consensus 151 FvDINiQN~KLEsL 164 (305)
T PF15290_consen 151 FVDINIQNKKLESL 164 (305)
T ss_pred HhhhhhhHhHHHHH
Confidence 55555444444333
No 276
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.72 E-value=48 Score=40.39 Aligned_cols=75 Identities=9% Similarity=0.083 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 558 IKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIES 637 (961)
Q Consensus 558 iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEs 637 (961)
|++++.-+-.+...+..-|+.++.+.+.++.-+..-. +.+.++ .+...+.....+|.-+..|.+....+-.++..
T Consensus 660 Fk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~----~al~K~-~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~ 734 (741)
T KOG4460|consen 660 FKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVL----SALPKP-TYILSAYQRKCIQSILKELGEHIREMVKQVKD 734 (741)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555333333322 333344 45555666666666666666655555444443
No 277
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=87.61 E-value=47 Score=36.24 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 539 QNLSELGEKFRAAEADLYCIKRNFEE-KEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 539 qeleEl~ee~qeaeEeld~iR~e~eE-leeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
..++.+..++..+...+...+..... ++.....+.++|..|...++.-.......+..+
T Consensus 92 ~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i 151 (247)
T PF06705_consen 92 SRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENI 151 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443333333333322 333344555555555555555544444444443
No 278
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=87.57 E-value=28 Score=40.49 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 540 NLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 540 eleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
.++++...|+-..++++....++.+++--+..+...|...+.+|..+++-
T Consensus 147 ~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~ 196 (464)
T KOG4637|consen 147 QLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENL 196 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34444444555555566667777777778888888888888888888876
No 279
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=87.45 E-value=48 Score=37.93 Aligned_cols=32 Identities=0% Similarity=-0.022 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 481 LRERVRELAEQNVSLQREVSTFNEREAESRSM 512 (961)
Q Consensus 481 LrERlreLeEknvsLqrEIe~leeKi~El~~k 512 (961)
..+.+.+++++...++.++...+.++.+...+
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555554443
No 280
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.35 E-value=11 Score=42.12 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=84.2
Q ss_pred cccccchhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhh
Q 002131 782 NDQTAGEIMRSELKAETLLTSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKD 861 (961)
Q Consensus 782 ~Y~~~~d~lr~klkses~~~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~ 861 (961)
.|.+=.|++.++-.+--- ||. =|.++|.-|.+|+.+|....+-...-..||..|..+|.-++ |+=|.++=
T Consensus 41 rY~~C~dNHGikPP~PEQ---YLT-PLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMr------EDWIEEEC 110 (305)
T PF15290_consen 41 RYMSCGDNHGIKPPNPEQ---YLT-PLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMR------EDWIEEEC 110 (305)
T ss_pred ceeecccCCCCCCCCHHH---hcC-hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 363335888888444333 332 27889999999998888887333333344444444444333 11122222
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002131 862 ESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVL 923 (961)
Q Consensus 862 D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~L 923 (961)
-.+++ |..|+|.-+||.+++.+++.+...+-.--.-++.|..-+...+..++.|-..+|-+
T Consensus 111 HRVEA-QLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElA 171 (305)
T PF15290_consen 111 HRVEA-QLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELA 171 (305)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHH
Confidence 24444 78899999999999999999998887777777777777766666666666555543
No 281
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=87.22 E-value=14 Score=42.08 Aligned_cols=39 Identities=8% Similarity=0.097 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 478 EQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHS 516 (961)
Q Consensus 478 kk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~l 516 (961)
..-+...|.+++++..+.=---+++-+....+.+.|+-|
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~L 117 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLL 117 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 344566666666666655555454444444444444444
No 282
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=87.14 E-value=47 Score=35.73 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 473 KYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRA 527 (961)
Q Consensus 473 ~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltsel 527 (961)
+.+.=.+.++.=++++.+........+...-.....+..++..+...+.......
T Consensus 21 k~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 21 KAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666666666666666666665555555555555555555554443
No 283
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.08 E-value=12 Score=34.08 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 500 STFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQN 540 (961)
Q Consensus 500 e~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqe 540 (961)
+.++.++..+-+.|+.+...++.+..+...+.++...+..+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444444444333333333333333
No 284
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=86.93 E-value=30 Score=40.77 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 509 SRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEAD 554 (961)
Q Consensus 509 l~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEe 554 (961)
.......+..|...+..+.+.+...+..++-++.+++++.....++
T Consensus 25 ~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 25 CEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444443333
No 285
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.85 E-value=96 Score=38.98 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002131 616 LLQREQMRLTGVEMSLRREIE 636 (961)
Q Consensus 616 ~lq~ElerLt~~eE~LReELE 636 (961)
.++++....-++.+.|+.++.
T Consensus 237 ~l~~~k~qr~~kl~~l~~~~~ 257 (660)
T KOG4302|consen 237 KLKEEKKQRLQKLQDLRTKLL 257 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 286
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.46 E-value=5.2 Score=36.34 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=56.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002131 852 DLELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIE 921 (961)
Q Consensus 852 ~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie 921 (961)
.|+..|..+++.|.+|..+-+...+.--.+.+++++|.......-..+..++.++..+..++..++..+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566778888899999999999998888889999888888888887777777777777777776666554
No 287
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=86.41 E-value=1e+02 Score=38.83 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 002131 492 NVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKE----- 566 (961)
Q Consensus 492 nvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEle----- 566 (961)
....+.+++.+..+..++...+.+++.....+..++..+..+.+.+.+.++.-++.+..--..+..+|..+.+.-
T Consensus 157 t~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~ 236 (739)
T PF07111_consen 157 TQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVH 236 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccc
Confidence 344455666666666666666666666666666666666666666666666666666665555555555553221
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhh-hhhHh------hhcchhhhhhHHHHHH-----
Q 002131 567 -----MECKDLQKSITRLLRTCSEQEKT-------------IAGLRD-GFSDQ------IEKKPALDKYDKHVAL----- 616 (961)
Q Consensus 567 -----eei~eleKeIa~Lq~~Ik~lEKt-------------Ie~Lrq-EL~eE------leke~~vee~ek~Ie~----- 616 (961)
.+...+...|..|+..-..+..+ |-.|.+ +|... ++.+ +..+...-+..
T Consensus 237 ~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e-~~~K~q~LL~~WREKV 315 (739)
T PF07111_consen 237 SQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPE-FSRKCQQLLSRWREKV 315 (739)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCch-hHHHHHHHHHHHHHHH
Confidence 22233333333333333333333 222222 22111 1111 01111111121
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002131 617 ------LQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKE 662 (961)
Q Consensus 617 ------lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne 662 (961)
++.....+.....+|+.++.+++.++.+-.++.+.+.+-|++-.-+
T Consensus 316 FaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AE 367 (739)
T PF07111_consen 316 FALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAE 367 (739)
T ss_pred HHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 2233344456677788888888888888888888888888665444
No 288
>PRK10698 phage shock protein PspA; Provisional
Probab=86.11 E-value=41 Score=36.52 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHhhhcchh---hhhhHHHHHHHHHHHHHHHHHHH
Q 002131 554 DLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT-IAGLRDGFSDQIEKKPA---LDKYDKHVALLQREQMRLTGVEM 629 (961)
Q Consensus 554 eld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt-Ie~LrqEL~eEleke~~---vee~ek~Ie~lq~ElerLt~~eE 629 (961)
.+..++..+.........++.++..+...+...+.. ...+..+= +.+-.. + ...+...+..++.++.......+
T Consensus 39 ~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~-EdLAr~-AL~~K~~~~~~~~~l~~~~~~~~~~~~ 116 (222)
T PRK10698 39 TLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEK-EDLARA-ALIEKQKLTDLIATLEHEVTLVDETLA 116 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333335555555556666666677777777666666 44444442 222211 1 12233444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 630 SLRREIESYRVEVDSLRHENISLLN 654 (961)
Q Consensus 630 ~LReELEsle~EIEsLReEl~~L~r 654 (961)
+|+..+..++..|.+.+.+...|.-
T Consensus 117 ~L~~~l~~L~~ki~eak~k~~~L~a 141 (222)
T PRK10698 117 RMKKEIGELENKLSETRARQQALML 141 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544444444444444433
No 289
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=85.87 E-value=77 Score=36.96 Aligned_cols=25 Identities=12% Similarity=0.140 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSL 631 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~L 631 (961)
+..+++.+..++..+..+..-...+
T Consensus 338 l~~le~~q~~l~~~l~~~~~~L~~v 362 (388)
T PF04912_consen 338 LSELESQQSDLQSQLKKWEELLNKV 362 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333333
No 290
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=85.54 E-value=1.2e+02 Score=38.72 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGL 456 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yL 456 (961)
|-.||.--+.||..+-..++.-|
T Consensus 381 iq~EIALA~QplrsENaqLrRrL 403 (861)
T PF15254_consen 381 IQVEIALAMQPLRSENAQLRRRL 403 (861)
T ss_pred chhhhHhhhhhhhhhhHHHHHHH
Confidence 33444445555555555555444
No 291
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=85.45 E-value=17 Score=33.72 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=23.2
Q ss_pred HHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 002131 822 LATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQ 856 (961)
Q Consensus 822 las~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q 856 (961)
+..++ |.||.|..++-.++...++.-.++|.+
T Consensus 2 l~elL---d~ir~Ef~~~~~e~~~~k~~~~e~e~k 33 (79)
T PF08581_consen 2 LNELL---DAIRQEFENLSQEANSYKHQKDEYEHK 33 (79)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566 777777777777777777777777665
No 292
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=85.42 E-value=28 Score=34.64 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 482 RERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQ 518 (961)
Q Consensus 482 rERlreLeEknvsLqrEIe~leeKi~El~~kIe~lee 518 (961)
+..++.|..+...|+.+++.+...+..+...+..+..
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666555555533
No 293
>COG5283 Phage-related tail protein [Function unknown]
Probab=85.24 E-value=1.3e+02 Score=40.09 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 505 REAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCS 584 (961)
Q Consensus 505 Ki~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik 584 (961)
+...+.+.++..+.-++.+..++.++..-+...++.+.+...++..++..+..+-..+..-...+.--+++|.+++..+.
T Consensus 58 k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is 137 (1213)
T COG5283 58 KYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAIS 137 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333444444444444444444444433333333333333333444444444444
Q ss_pred HHHH
Q 002131 585 EQEK 588 (961)
Q Consensus 585 ~lEK 588 (961)
.+.+
T Consensus 138 ~t~k 141 (1213)
T COG5283 138 TLNK 141 (1213)
T ss_pred hhhh
Confidence 4444
No 294
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=85.23 E-value=51 Score=34.32 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 002131 472 EKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQY-TEENGDLRQNLSELGEKFRA 550 (961)
Q Consensus 472 ~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEel-eeELeeleqeleEl~ee~qe 550 (961)
....-....|++++..+.........++.............+......|.....--..+ -+++...+.-...+..++..
T Consensus 11 ~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~ 90 (158)
T PF09486_consen 11 QRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRA 90 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444443311111 25778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 002131 551 AEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSD 599 (961)
Q Consensus 551 aeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~e 599 (961)
++..+..++..+.....++..+...|.+++..|+...++|..++...+.
T Consensus 91 ~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea 139 (158)
T PF09486_consen 91 AEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEA 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888733
No 295
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.22 E-value=9.9 Score=39.02 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHH
Q 002131 568 ECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEM 629 (961)
Q Consensus 568 ei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE 629 (961)
++.++..+|..|+.++..++..+..++.+| ..+...++..++...|..+..++..|....+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL-~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAEL-ASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666 5555554444444444443333333333333
No 296
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=85.18 E-value=72 Score=37.82 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=75.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 002131 457 EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEE--- 533 (961)
Q Consensus 457 EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeE--- 533 (961)
+.-|....+++... +..-...+..||++.++-...|+..+...-+.|..+...|+.++..|..-++-+.-..--
T Consensus 255 ~~~l~~tan~lr~Q---~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~ 331 (421)
T KOG2685|consen 255 DQTLRETANDLRTQ---ADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLEN 331 (421)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHH
Confidence 44444444444422 223344566777777777777777777777777777777777766665444433333222
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 534 --------------NGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTC 583 (961)
Q Consensus 534 --------------LeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~I 583 (961)
...|..+|.++..-+..+++.++..+..+.-+.+....++.+|+...+.+
T Consensus 332 Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~nsL 395 (421)
T KOG2685|consen 332 RTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIKANSL 395 (421)
T ss_pred cccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 23466677777777777777777777777777777777777776665543
No 297
>PRK12704 phosphodiesterase; Provisional
Probab=84.58 E-value=1.1e+02 Score=37.50 Aligned_cols=12 Identities=8% Similarity=0.470 Sum_probs=4.9
Q ss_pred HHHHHhhhhhHH
Q 002131 457 EKELDRRSSDWS 468 (961)
Q Consensus 457 EKEL~rrqnE~~ 468 (961)
++++..+..++.
T Consensus 63 eeE~~~~R~Ele 74 (520)
T PRK12704 63 KEEIHKLRNEFE 74 (520)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 298
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.56 E-value=19 Score=32.75 Aligned_cols=53 Identities=25% Similarity=0.170 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 529 QYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLR 581 (961)
Q Consensus 529 eleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~ 581 (961)
.+-+.+.-++.++.+++++...+.++...++.+...++.+.......|..+-.
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444444444444444333
No 299
>PF14992 TMCO5: TMCO5 family
Probab=84.04 E-value=55 Score=36.99 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002131 431 LRMVKADLESRTRRLEREKVEL 452 (961)
Q Consensus 431 L~Ri~~ELe~QLepLEkQaekA 452 (961)
|.+=|.+.+..+..|+.++.+.
T Consensus 23 lL~ki~~~E~~iq~Le~Eit~~ 44 (280)
T PF14992_consen 23 LLQKIQEKEGAIQSLEREITKM 44 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 300
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=84.03 E-value=26 Score=42.40 Aligned_cols=99 Identities=17% Similarity=0.285 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 493 VSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDL 572 (961)
Q Consensus 493 vsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~el 572 (961)
.-|..+|+.+..++..+..+..++..+-..+...++..+.+.+.+..++.+.......+++++.--+.+|+. ++..+
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~---QLs~M 492 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEE---QLSMM 492 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHH
Confidence 345566666666666666666666666666666666666666666666666666666666666666666653 45556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002131 573 QKSITRLLRTCSEQEKTIAGLR 594 (961)
Q Consensus 573 eKeIa~Lq~~Ik~lEKtIe~Lr 594 (961)
...|+.+..++..+..+|..|.
T Consensus 493 SEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 493 SEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6666777767666666666665
No 301
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.01 E-value=82 Score=36.17 Aligned_cols=88 Identities=24% Similarity=0.236 Sum_probs=69.3
Q ss_pred HHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhh
Q 002131 590 IAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMK 669 (961)
Q Consensus 590 Ie~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~k 669 (961)
+.=+++.+ ++.... +......++..+.++..+......|+.+++....+...|..++.....+|.-... .+.-
T Consensus 216 V~P~~~~l-~~a~~~--l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~----Li~~ 288 (344)
T PF12777_consen 216 VEPKRQKL-EEAEAE--LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEK----LISG 288 (344)
T ss_dssp CCHHHHHH-HHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHC
T ss_pred HhHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH----HHhh
Confidence 34466667 777777 8889999999999999999999999999999999999999999888888876544 5555
Q ss_pred hhHHH---HHHHHHHHhc
Q 002131 670 LDKEL---WTRICCLQNQ 684 (961)
Q Consensus 670 l~~El---~~~I~~lq~q 684 (961)
|..|. ...+..+..+
T Consensus 289 L~~E~~RW~~~~~~l~~~ 306 (344)
T PF12777_consen 289 LSGEKERWSEQIEELEEQ 306 (344)
T ss_dssp CHHHHHCCHCHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHH
Confidence 66555 5566666665
No 302
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.95 E-value=25 Score=35.25 Aligned_cols=87 Identities=13% Similarity=0.209 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 426 SAKEELRMVKADLESRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNER 505 (961)
Q Consensus 426 ~t~enL~Ri~~ELe~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeK 505 (961)
.|+-||...+.-+-+|++.+-..+..+|..|-+.|+.. ..++.....-.+..++.|.++.+....+..++.....-
T Consensus 36 vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~v----d~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 36 VTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRV----DDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQM 111 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 78888988888888999999888888888875555442 22333333333333444444444444444444444444
Q ss_pred HHHHHHHHHHH
Q 002131 506 EAESRSMITHS 516 (961)
Q Consensus 506 i~El~~kIe~l 516 (961)
...+..+|.++
T Consensus 112 V~~Le~ki~~i 122 (126)
T PF07889_consen 112 VEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 303
>PRK11519 tyrosine kinase; Provisional
Probab=83.84 E-value=34 Score=43.03 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 467 WSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNER 505 (961)
Q Consensus 467 ~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeK 505 (961)
...+....+.-...+++|+..+..+....+..++.+..+
T Consensus 258 ~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 258 IERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555443
No 304
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.80 E-value=23 Score=38.51 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 530 YTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRT 582 (961)
Q Consensus 530 leeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~ 582 (961)
+.+++..+++++++....++.++...+.+++..+.+..++..+-.+-..|+.+
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444443333333333
No 305
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=83.77 E-value=28 Score=43.85 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 452 LQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQRE 498 (961)
Q Consensus 452 AK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrE 498 (961)
+..|++..+++++......+.=++.+...++.++...+.+...|+.+
T Consensus 250 a~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 250 ANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777775566666666777777777777777777777665
No 306
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=83.73 E-value=1.2e+02 Score=37.46 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 474 YQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMIT 514 (961)
Q Consensus 474 ~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe 514 (961)
.+.+..++.+++..|..+......++....+-...+.....
T Consensus 412 ~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~ 452 (607)
T KOG0240|consen 412 LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLL 452 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655555555554444433
No 307
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.68 E-value=19 Score=33.43 Aligned_cols=35 Identities=11% Similarity=0.271 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 500 STFNEREAESRSMITHSEQQLKDLTRRAEQYTEEN 534 (961)
Q Consensus 500 e~leeKi~El~~kIe~leeqIe~ltselEeleeEL 534 (961)
+.+++||..+-+-|.-+...|+.++.+-..+.++.
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444444433333333
No 308
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.48 E-value=78 Score=35.07 Aligned_cols=191 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 499 VSTFNEREAESRSM---ITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKS 575 (961)
Q Consensus 499 Ie~leeKi~El~~k---Ie~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKe 575 (961)
+..+......+... +..-...........+++...|..+..-+..+..+...+-+....+..=+..+-+-...+..-
T Consensus 32 ~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~ 111 (243)
T cd07666 32 LSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADS 111 (243)
T ss_pred hhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHH
Q ss_pred HHHHHHHHH----HHHHHHHHHhhhhhHhhhcc-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 576 ITRLLRTCS----EQEKTIAGLRDGFSDQIEKK-----PALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLR 646 (961)
Q Consensus 576 Ia~Lq~~Ik----~lEKtIe~LrqEL~eEleke-----~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLR 646 (961)
+..+-.-+. .+.+.+.++...+ .+.-++ .++..+-+.-...|.+++.+.......+.+...+..+++++.
T Consensus 112 L~~~a~~~d~~~~~~~~~~~~l~~~f-~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e 190 (243)
T cd07666 112 LKGMASCIDRCCKATDKRMKGLSEQL-LPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLE 190 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhcCCchhhhHhhhhHHH----HHHHHHHHhccccCCCCChHHHHHHHHHHh
Q 002131 647 HENISLLNRLKGNGKESAALTMKLDKEL----WTRICCLQNQGISMLNESTQLCSQLLEFIK 704 (961)
Q Consensus 647 eEl~~L~rRLq~~~ne~~~~~~kl~~El----~~~I~~lq~q~lS~~d~n~~lm~KLL~~IK 704 (961)
.+.....+.++ .|+ +.++.+++.-+....+.+-++|.++|....
T Consensus 191 ~kve~a~~~~k--------------~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~We 238 (243)
T cd07666 191 DKVECANNALK--------------ADWERWKQNMQTDLRSAFTDMAENNISYYEECLATWE 238 (243)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 309
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.37 E-value=1.1e+02 Score=36.55 Aligned_cols=18 Identities=39% Similarity=0.344 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhhHHHH
Q 002131 404 EEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 404 edRR~i~EEaaGi~Kyk~ 421 (961)
|+||..+...+-......
T Consensus 127 e~k~~~~~~~~~q~esll 144 (446)
T KOG4438|consen 127 EEKMDLYRPFIQQLESLL 144 (446)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777665555444
No 310
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=83.24 E-value=1.3e+02 Score=37.24 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 491 QNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECK 570 (961)
Q Consensus 491 knvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~ 570 (961)
....+.......+....-++..+.+|.+|+.....++.+..+....++.++.+..+-+...+..++.++.+..+.++...
T Consensus 401 ~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e 480 (607)
T KOG0240|consen 401 EEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENE 480 (607)
T ss_pred hhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334443333555556666677777777777777777777777777777777777777776666666666666655443
Q ss_pred HHHHH
Q 002131 571 DLQKS 575 (961)
Q Consensus 571 eleKe 575 (961)
....+
T Consensus 481 ~~~~e 485 (607)
T KOG0240|consen 481 AAKDE 485 (607)
T ss_pred HHHHH
Confidence 33333
No 311
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=83.22 E-value=62 Score=33.72 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 493 VSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQY 530 (961)
Q Consensus 493 vsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEel 530 (961)
..++.||......+.++-..++.++..-......+..+
T Consensus 30 ~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eV 67 (159)
T PF05384_consen 30 ERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEV 67 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333333333
No 312
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=83.14 E-value=1.2e+02 Score=37.00 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 447 REKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSE 517 (961)
Q Consensus 447 kQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~le 517 (961)
.++.+.+..+++++..+..++..+-+.+......|..+...|+.+...|......+..+..++......+.
T Consensus 58 eE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555444444443333333333344444444444444444444444444444443333333
No 313
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=83.09 E-value=93 Score=35.61 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 564 EKEMECKDLQKSITRLLRTCSEQEKTIA 591 (961)
Q Consensus 564 Eleeei~eleKeIa~Lq~~Ik~lEKtIe 591 (961)
.....+.+..+.|+.++.++..++..|.
T Consensus 78 k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 78 KAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 314
>PF15294 Leu_zip: Leucine zipper
Probab=82.92 E-value=47 Score=37.47 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 467 WSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSM 512 (961)
Q Consensus 467 ~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~k 512 (961)
+...|.+++.|-+.|++|+..++.+-...-+|-+.++..+.++...
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~ 175 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDE 175 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888899999999999999999988888888888883
No 315
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.86 E-value=69 Score=33.97 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 534 NGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 534 LeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
|++-+.-..++...-.-+++.+++.+.....+..++..+..+...++..+..-+......++.+
T Consensus 69 LeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~ 132 (182)
T PF15035_consen 69 LEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENF 132 (182)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334455555555555555555555555555555555554444444444444
No 316
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=82.79 E-value=47 Score=39.21 Aligned_cols=77 Identities=27% Similarity=0.259 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 495 LQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQK 574 (961)
Q Consensus 495 LqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleK 574 (961)
++.++..+.+.+.+-..+.+.+++++..+++- ...|+.++++++....++.+-. ..+ ...+++.
T Consensus 242 ~~~e~~~~~~~LqEEr~R~erLEeqlNd~~el---Hq~Ei~~LKqeLa~~EEK~~Yq------s~e-------RaRdi~E 305 (395)
T PF10267_consen 242 YQREYQFILEALQEERYRYERLEEQLNDLTEL---HQNEIYNLKQELASMEEKMAYQ------SYE-------RARDIWE 305 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHH------HHH-------HHhHHHH
Confidence 56677777888888888888887777655443 4566666666655554443322 111 2344555
Q ss_pred HHHHHHHHHHHHH
Q 002131 575 SITRLLRTCSEQE 587 (961)
Q Consensus 575 eIa~Lq~~Ik~lE 587 (961)
.|+.+++.|..+|
T Consensus 306 ~~Es~qtRisklE 318 (395)
T PF10267_consen 306 VMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666666
No 317
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=82.77 E-value=3.6 Score=47.66 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=7.5
Q ss_pred hccHHHHHHHhc
Q 002131 747 ITSLQTMSALLH 758 (961)
Q Consensus 747 ~~sl~TIlslL~ 758 (961)
+..|..|..+|+
T Consensus 296 Rr~~~~i~~~Lr 307 (370)
T PF02994_consen 296 RRKFNPIKKKLR 307 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444666667776
No 318
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=82.76 E-value=70 Score=33.98 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 561 NFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 561 e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
++....+.+..++++-.+|.....-.+..|..|++.|
T Consensus 114 ~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL 150 (178)
T PF14073_consen 114 ELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKL 150 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566666666666666666666666
No 319
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.51 E-value=53 Score=36.93 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhh---h---HHHHHHHHHHH
Q 002131 802 SLLREKLYSKELEVEQL-QAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKDE---S---INQLQIDLQDS 874 (961)
Q Consensus 802 s~LkE~I~~ee~eleql-q~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D---~---I~~lq~dlqe~ 874 (961)
+++-+.|..-..++++. -.++.... =.++.++...|..++-++-=|...+.+.-+ . -.....+.++.
T Consensus 125 S~yLe~Lc~IIqeLq~t~~~~LS~~d------l~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~ 198 (269)
T PF05278_consen 125 SYYLECLCDIIQELQSTPLKELSESD------LKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEK 198 (269)
T ss_pred HHHHHHHHHHHHHHhcCcHhhhhHHH------HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566665555432 11222111 223334444444444444444444444333 2 23345677778
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHHhhh
Q 002131 875 AKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITILKD 939 (961)
Q Consensus 875 ~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil~D 939 (961)
...|...+..|+.+.++++..-++++.++.++++++..+..|+-+-..|.+-+......+.++++
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888889999999999999999999999999999999999999988888888888887777654
No 320
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=82.29 E-value=44 Score=39.42 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMI 513 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kI 513 (961)
-+.|+......|+...++++..+-+++......+. .-....++|++.|.++-+ --+.||.++++.+....+++
T Consensus 220 el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~Lq----EEr~R~erLEeqlNd~~e---lHq~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 220 ELREIKESQSRLEESIEKLKEQYQREYQFILEALQ----EERYRYERLEEQLNDLTE---LHQNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHH
Confidence 35566666666666666666655445443322222 222223344554444433 34678888888888888877
Q ss_pred HHH
Q 002131 514 THS 516 (961)
Q Consensus 514 e~l 516 (961)
+..
T Consensus 293 ~Yq 295 (395)
T PF10267_consen 293 AYQ 295 (395)
T ss_pred HHH
Confidence 766
No 321
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.19 E-value=1.1e+02 Score=39.72 Aligned_cols=118 Identities=18% Similarity=0.150 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHH
Q 002131 536 DLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVA 615 (961)
Q Consensus 536 eleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie 615 (961)
.+..++.++..+.+..+..++.+-.+......-....|+++..+...+..++.++.++++++ ..++..
T Consensus 471 ~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el-~~~~~~----------- 538 (913)
T KOG0244|consen 471 SLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNEL-NVFNRL----------- 538 (913)
T ss_pred hhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHH-HhhhHH-----------
Confidence 34555666666666666666666665566666666777777777777777777777777777 444331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHH
Q 002131 616 LLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKEL 674 (961)
Q Consensus 616 ~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El 674 (961)
...-.+..+++|..++.++..|+-.++.-.. |........-+..++.++|
T Consensus 539 --------~~kl~eer~qklk~le~q~s~lkk~l~~~~~-l~~~~~~~~~~~~kl~~ei 588 (913)
T KOG0244|consen 539 --------AAKLGEERVQKLKSLETQISLLKKKLSSQRK-LIKPKPKSEGIRAKLLQEI 588 (913)
T ss_pred --------HHHhhhHHHHHHHHHHHHHHHHHHhhHHHHH-HhccchhhHHHHHHHHHHH
Confidence 1223556667777778888777777666543 4444444455666666666
No 322
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=82.04 E-value=2.6 Score=47.97 Aligned_cols=119 Identities=13% Similarity=0.230 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 479 QRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCI 558 (961)
Q Consensus 479 k~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~i 558 (961)
..|+-.+..|.+.-..+...|..++..+..+...+..+...+..+...+..++..+..+...+..+..........+..+
T Consensus 38 saLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~L 117 (326)
T PF04582_consen 38 SALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDL 117 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHH
Confidence 33444444444444455555555555555555555555555555566666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
+..+..+.-.+..+.-.|....-+|..+++++..|+.+.
T Consensus 118 qs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~ 156 (326)
T PF04582_consen 118 QSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGS 156 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCC
Confidence 666666777777777777777777777777777777664
No 323
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.98 E-value=13 Score=40.57 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 482 RERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAA 551 (961)
Q Consensus 482 rERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qea 551 (961)
.+.+.++...+..|-.+++.++.+.++..+++++++-....++..+..+-.+...+++-++++......+
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~ 210 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELP 210 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccch
Confidence 3344445555556666666666666666666666655555555555555555555555555554444433
No 324
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.91 E-value=1.4e+02 Score=36.75 Aligned_cols=124 Identities=20% Similarity=0.254 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 466 DWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELG 545 (961)
Q Consensus 466 E~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ 545 (961)
+-..+|+.|+-+.+.|-+.|..|.-........+-.+.+-...+..-+..+...+..+.-.++..++++...+..+....
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666544444444444444444445555555555555555555666666666555555555
Q ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 546 EKFRAAE------ADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 546 ee~qeae------Eeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
+..+.++ +-+.++..+....+.++..++..+.++....+..++.
T Consensus 408 ~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkevene 457 (654)
T KOG4809|consen 408 NIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENE 457 (654)
T ss_pred HhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555542 2233334444445555666666666665555555544
No 325
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.70 E-value=59 Score=38.47 Aligned_cols=93 Identities=23% Similarity=0.246 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 431 LRMVKADLESRTRRLEREKVE---LQSGL--EKELDRRS-SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNE 504 (961)
Q Consensus 431 L~Ri~~ELe~QLepLEkQaek---AK~yL--EKEL~rrq-nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~lee 504 (961)
|-+.+.+++.++..|...... +...+ +..+.+.. ..+..++...|.++++|++..+.|.+..++.......+..
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~ 83 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTV 83 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666555544332 22222 33333333 5567778888888888888888888888886666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002131 505 REAESRSMITHSEQQLKDL 523 (961)
Q Consensus 505 Ki~El~~kIe~leeqIe~l 523 (961)
++..+.+.--+.-.++..+
T Consensus 84 ~~~~~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 84 DVLIAENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666555544444444333
No 326
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=81.62 E-value=29 Score=33.48 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTIA 591 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe 591 (961)
-..|..+++++..+...+..+..++.+++.++.
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~ 41 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALE 41 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555533
No 327
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.59 E-value=78 Score=34.82 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 491 QNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEK 565 (961)
Q Consensus 491 knvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEl 565 (961)
+....+.|.+.+.+-+.++.+++....+-+++.....-.+++++..++.+++-+....+..+++++..++-+.++
T Consensus 52 ~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~k 126 (246)
T KOG4657|consen 52 ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQK 126 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455555555566666666666666665555555666666666666666666666666666666666555444443
No 328
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=81.51 E-value=62 Score=32.48 Aligned_cols=112 Identities=20% Similarity=0.217 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 484 RVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFE 563 (961)
Q Consensus 484 RlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~e 563 (961)
.|..|-.....+..-+..+.. ...+...++.+...+..+....-..+.++..+...+.+....+..++..+.....++.
T Consensus 8 eL~~Ll~d~~~l~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 8 ELQELLSDEEKLDAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHHHH-HHHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445544444333 3334444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 564 EKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 564 Eleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
.+ ...+...-=.+.|+..+...+..-..+-+.+
T Consensus 87 ~l-~~~~s~~~l~~~L~~~~~e~eeeSe~lae~f 119 (150)
T PF07200_consen 87 EL-SSNYSPDALLARLQAAASEAEEESEELAEEF 119 (150)
T ss_dssp HH-HHCHHHHHHHHHHHHHHHHHHHHHHHHC-S-
T ss_pred HH-HccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 3333333445566666666666655555554
No 329
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=81.50 E-value=27 Score=33.06 Aligned_cols=43 Identities=7% Similarity=-0.039 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 554 DLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDG 596 (961)
Q Consensus 554 eld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqE 596 (961)
..+....++-.+++.+..++.+|+..........+....+..+
T Consensus 18 ~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e 60 (96)
T PF08647_consen 18 QADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNE 60 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333333444444444444444444444444444443333333
No 330
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.16 E-value=1.7e+02 Score=37.27 Aligned_cols=223 Identities=16% Similarity=0.107 Sum_probs=103.3
Q ss_pred HHHhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 459 ELDRRS-----SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEE 533 (961)
Q Consensus 459 EL~rrq-----nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeE 533 (961)
.|+.++ ..--.|+..+....+-+..++.++-.+.-..++|.-.++++.+.+.. |..+ .=..-++..+...
T Consensus 601 kl~DRS~Y~LG~tN~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~-i~~~----~fa~ID~~Sa~rq 675 (1104)
T COG4913 601 KLGDRSTYRLGSTNDAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAH-IQAL----NFASIDLPSAQRQ 675 (1104)
T ss_pred hcCccceeeecCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHhc----chhhcchhhHHHH
Confidence 455555 22235666777777777777777777777777777666666655432 2221 1112233334444
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhhhHhhh
Q 002131 534 NGDLRQNLSELG---EKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGL--------RDGFSDQIE 602 (961)
Q Consensus 534 LeeleqeleEl~---ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~L--------rqEL~eEle 602 (961)
|.+++..++++. +-.+.++..++..+-....++..+...-.+-..+.++++..+....++ -.+++....
T Consensus 676 Iael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~ 755 (1104)
T COG4913 676 IAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGA 755 (1104)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 444443333332 233333444444444444444444333333333333333333221111 111211111
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHH------HH
Q 002131 603 KKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKEL------WT 676 (961)
Q Consensus 603 ke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El------~~ 676 (961)
.- +-..--.......+.++ ++..+.|...|...+.++.-|++++.-.....++. -...+..++.|+ -+
T Consensus 756 a~--f~q~a~~~h~~~vd~~~-~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~---~~a~~~e~~ael~~ipey~~ 829 (1104)
T COG4913 756 AH--FPQVAPEQHDDIVDIER-IEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKE---DTAALSEVGAELDDIPEYLA 829 (1104)
T ss_pred hh--hhhhChHhhhhhhhHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc---chhhhhhhccCHhHHHHHHH
Confidence 11 11111111122222222 45566777777777777777777766665555443 333444444444 45
Q ss_pred HHHHHHhc--------cccCCCCC
Q 002131 677 RICCLQNQ--------GISMLNES 692 (961)
Q Consensus 677 ~I~~lq~q--------~lS~~d~n 692 (961)
++..|+.. |+.++|++
T Consensus 830 rL~~L~~D~Lpef~arF~~llN~~ 853 (1104)
T COG4913 830 RLQTLTEDALPEFLARFQELLNRS 853 (1104)
T ss_pred HHHhhhhhhHHHHHHHHHHHhhhc
Confidence 55555554 55555554
No 331
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=81.01 E-value=73 Score=32.99 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 002131 557 CIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLR-REI 635 (961)
Q Consensus 557 ~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LR-eEL 635 (961)
=.|+++..+...|-..++++.-|...|..-+++....-.- +.+..+....+-..|+.|...-+.+| .+|
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea----------~nEknkeK~~Lv~~L~eLv~eSE~~rmKKL 150 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEA----------FNEKNKEKAQLVTRLMELVSESERLRMKKL 150 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555566666666666665555443222222 33334445555555555555555444 345
Q ss_pred HHHHHHH
Q 002131 636 ESYRVEV 642 (961)
Q Consensus 636 Esle~EI 642 (961)
+.+...|
T Consensus 151 EELsk~i 157 (159)
T PF04949_consen 151 EELSKEI 157 (159)
T ss_pred HHHHhhc
Confidence 5554444
No 332
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=81.00 E-value=58 Score=38.69 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 429 EELRMVKADLESRTRRLEREKVELQSGL 456 (961)
Q Consensus 429 enL~Ri~~ELe~QLepLEkQaekAK~yL 456 (961)
++..-++..++.+++.++.+.+..+.++
T Consensus 139 eC~d~l~~~ld~e~~~~~~e~~~Y~~~l 166 (447)
T KOG2751|consen 139 ECMDVLLNKLDKEVEDAEDEVDTYKACL 166 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444477788888888888888888877
No 333
>PF14992 TMCO5: TMCO5 family
Probab=80.96 E-value=52 Score=37.17 Aligned_cols=127 Identities=21% Similarity=0.319 Sum_probs=62.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 457 EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGD 536 (961)
Q Consensus 457 EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELee 536 (961)
++.|+..++.+..+|...+..++.|...+......-..- ++...... ..+.-+..++.+...++.+.+-
T Consensus 13 ~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~-e~e~~~~~----------~~e~~l~~le~e~~~LE~~ne~ 81 (280)
T PF14992_consen 13 EQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS-EEEDIISE----------ERETDLQELELETAKLEKENEH 81 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch-hHHhhhhh----------chHHHHHHHHhhhHHHhhhhHh
Confidence 556666668888888888888888777776655432222 11111111 1111111122222333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 537 LRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 537 leqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
+-.++.+++.+....... ++-+..............+..+...|..+++.|+......
T Consensus 82 l~~~~~elq~k~~e~~~~---~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~ 139 (280)
T PF14992_consen 82 LSKSVQELQRKQDEQETN---VQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDY 139 (280)
T ss_pred hhhhhhhhhhhhccccCC---CCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444554443332222 2333334444445555566666666666666666665543
No 334
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.88 E-value=46 Score=33.48 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 002131 498 EVSTFNEREAESRS 511 (961)
Q Consensus 498 EIe~leeKi~El~~ 511 (961)
-.+....++..+.+
T Consensus 44 A~~~v~kql~~vs~ 57 (126)
T PF07889_consen 44 AVASVSKQLEQVSE 57 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 335
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.86 E-value=20 Score=36.85 Aligned_cols=63 Identities=25% Similarity=0.419 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 470 KLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNERE--AESRSMITHSEQQLKDLTRRAEQYTE 532 (961)
Q Consensus 470 kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi--~El~~kIe~leeqIe~ltselEelee 532 (961)
.+..+..++..|++++..|......+..++..+.... .++...|..++.++..+...++.++.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666777777777777777777777777776665 45555666665555555555555543
No 336
>PRK11519 tyrosine kinase; Provisional
Probab=80.82 E-value=51 Score=41.54 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 452 LQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQRE 498 (961)
Q Consensus 452 AK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrE 498 (961)
+..|++..+++++......+.=++.....++.++...+.....|+.+
T Consensus 250 ~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777765566666666777777777777777777777664
No 337
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=80.65 E-value=83 Score=33.44 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHhhhcc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKT-IAGLRDGFSDQIEKK---PALDKYDKHVALLQREQMRLTGVEMSLRRE 634 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKt-Ie~LrqEL~eEleke---~~vee~ek~Ie~lq~ElerLt~~eE~LReE 634 (961)
-..+..-+..|.-++|.+.-.+.-+...++. ...+++...-+-+.. ..+......++.+..++.+|+.-...-..+
T Consensus 63 ~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~K 142 (178)
T PF14073_consen 63 SSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETK 142 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555666666666666655555544 222222221111110 112333455667777788888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002131 635 IESYRVEVDSLRHENISLLNRLKGNGK 661 (961)
Q Consensus 635 LEsle~EIEsLReEl~~L~rRLq~~~n 661 (961)
|..++..+-+-.++..-+..+=..++.
T Consensus 143 i~~LE~KL~eEehqRKlvQdkAaqLQt 169 (178)
T PF14073_consen 143 IKELEEKLQEEEHQRKLVQDKAAQLQT 169 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888777777777666655555444443
No 338
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=80.60 E-value=86 Score=33.55 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 439 ESRTRRLEREKVELQSGL-EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSE 517 (961)
Q Consensus 439 e~QLepLEkQaekAK~yL-EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~le 517 (961)
+.|..--+.-...+|..| ++.+..-. -...=|.+.+.-...|+.+|++.+.--......|...+.....+..-.....
T Consensus 30 daQ~~A~~~Aa~~vk~~lA~kA~qaA~-aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~ 108 (188)
T PF05335_consen 30 DAQAAAAEQAAQQVKNQLADKAAQAAK-AAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQ 108 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555666666 77665555 1334577778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 518 QQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLL 580 (961)
Q Consensus 518 eqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq 580 (961)
.++..++.-+...+..+.+...-....+.++.+....+...+.++..+.+.+.....++...+
T Consensus 109 ~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 109 QQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888777777666665544
No 339
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=80.52 E-value=52 Score=37.66 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 479 QRLRERVRELAEQNVSLQREVSTFNER 505 (961)
Q Consensus 479 k~LrERlreLeEknvsLqrEIe~leeK 505 (961)
..+++++..+..+....+..+..+..+
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444443
No 340
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=80.40 E-value=20 Score=31.79 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 455 GLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAE 508 (961)
Q Consensus 455 yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~E 508 (961)
.|+.||..+|. +...|.+....-.-...++++.+.++..|..+|..++.++.+
T Consensus 5 aL~~EirakQ~-~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 5 ALEAEIRAKQA-IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444442 233333333444444444444444444444444444444433
No 341
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.38 E-value=1.1e+02 Score=34.55 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=10.4
Q ss_pred hhhhcchhhhhhhcccccCCCChhHHH
Q 002131 370 GRVMVLSEELEHETFLHDTGFDVPAMI 396 (961)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (961)
.++.|=...||+- .||-|..|+
T Consensus 64 a~IKLN~KkLY~A-----DGyAVkELL 85 (267)
T PF10234_consen 64 ARIKLNPKKLYQA-----DGYAVKELL 85 (267)
T ss_pred hheeecHHHHHHh-----hHHHHHHHH
Confidence 3444444444442 355555544
No 342
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.28 E-value=55 Score=34.71 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002131 532 EENGDLRQNLSELGEKF 548 (961)
Q Consensus 532 eELeeleqeleEl~ee~ 548 (961)
+++..+..++.+++.++
T Consensus 110 ~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 110 EELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 343
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=80.26 E-value=1.3e+02 Score=35.46 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002131 801 TSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKDESINQLQIDLQDSAKELKI 880 (961)
Q Consensus 801 ~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~ 880 (961)
...|.+.|.+-....-+|+..|.+++ +.++.+++=+..-|-+=+-+...||.|++...+ -.|.++-....+++.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lk---e~~krdy~fi~etLQEERyR~erLEEqLNdlte---LqQnEi~nLKqElas 335 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLK---EQIKRDYKFIAETLQEERYRYERLEEQLNDLTE---LQQNEIANLKQELAS 335 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHH
Confidence 44566666666666666777777777 777777777777777777888889999876554 345556666666666
Q ss_pred HhhhhhhHHHHHH-HHHHHHHHHHHHHHHh
Q 002131 881 MKGVLPKVSEERD-MMWEEVKQYSEKNMLL 909 (961)
Q Consensus 881 ~~g~L~~v~eerd-~~~ee~k~lke~~~~~ 909 (961)
|+.-+.=..-||- .+|+-++.|.-++..+
T Consensus 336 meervaYQsyERaRdIqEalEscqtrisKl 365 (455)
T KOG3850|consen 336 MEERVAYQSYERARDIQEALESCQTRISKL 365 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555555553 4566666676665543
No 344
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=80.17 E-value=50 Score=35.20 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 574 KSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 574 KeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
++|.+++..+..++..+...+-+|
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666665
No 345
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.05 E-value=18 Score=33.48 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=47.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002131 852 DLELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIE 921 (961)
Q Consensus 852 ~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie 921 (961)
.||-++...+|.|.-||-++.|....=..+......+...++.+.++..+++.....++..+..|-.+++
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666677777777777766666666666666666666667777777777777777777666655543
No 346
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.03 E-value=1.6e+02 Score=36.41 Aligned_cols=51 Identities=16% Similarity=0.076 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002131 874 SAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLD 924 (961)
Q Consensus 874 ~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Le 924 (961)
+..+|..|...-....+.+..+.++.+++......-+..|..++..+.+++
T Consensus 769 SK~~L~s~~~~~~~AE~~~K~L~~~~~~~~~~~~~~~~~~~~~~~~L~K~~ 819 (852)
T KOG4787|consen 769 SKNELAAMKKLKDDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIALLKKQL 819 (852)
T ss_pred cHHHHHHhhcchhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 556777777777777777777888877777777666666666665555443
No 347
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=79.83 E-value=54 Score=38.94 Aligned_cols=91 Identities=15% Similarity=0.117 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 499 VSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITR 578 (961)
Q Consensus 499 Ie~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~ 578 (961)
++.+...++.+..+-..+-++++.+..+-..+-..+..++..-.++.++-..+-.++..++.+.-+-+.++..++-.|.-
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~ 257 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEY 257 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Confidence 33334444444444444444555444444444444444444444444444444444444444445555555555555555
Q ss_pred HHHHHHHHHHH
Q 002131 579 LLRTCSEQEKT 589 (961)
Q Consensus 579 Lq~~Ik~lEKt 589 (961)
.+.+.+.+.++
T Consensus 258 s~~qldkL~kt 268 (447)
T KOG2751|consen 258 SQAQLDKLRKT 268 (447)
T ss_pred HHHHHHHHHhh
Confidence 55555555555
No 348
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=79.83 E-value=4.2 Score=47.10 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 544 LGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 544 l~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
+..+.+.+++.+..+...+.++...+..+++.|..+...+..++..
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555556666666666677777777776666
No 349
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=79.66 E-value=56 Score=34.66 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002131 537 LRQNLSELGEKFRAAEAD 554 (961)
Q Consensus 537 leqeleEl~ee~qeaeEe 554 (961)
+...+.++..+...++.+
T Consensus 108 ~l~~l~~l~~~~~~l~~e 125 (188)
T PF03962_consen 108 LLEELEELKKELKELKKE 125 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 350
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=79.54 E-value=1.4e+02 Score=35.41 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQ 453 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK 453 (961)
...-+..++..|......+.
T Consensus 196 ~~~~l~~~l~~lr~~~~~ae 215 (458)
T COG3206 196 ASDSLDERLEELRARLQEAE 215 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 351
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=79.46 E-value=64 Score=32.07 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTIA 591 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe 591 (961)
.+..+.+...+..+.+.|..++.++......+.
T Consensus 100 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 100 DKRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444433333
No 352
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.27 E-value=22 Score=32.34 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 467 WSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHS 516 (961)
Q Consensus 467 ~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~l 516 (961)
+...|......+..|.++...|..+...+..-|-.+..++.++...+..+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443333333
No 353
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=78.95 E-value=34 Score=32.63 Aligned_cols=31 Identities=6% Similarity=0.082 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
...|..++.++..+...+..+...+.+++..
T Consensus 5 ~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v 35 (105)
T cd00632 5 LAQLQQLQQQLQAYIVQRQKVEAQLNENKKA 35 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555556665555555555
No 354
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=78.91 E-value=1.2e+02 Score=34.21 Aligned_cols=90 Identities=14% Similarity=0.191 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 503 NEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRT 582 (961)
Q Consensus 503 eeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~ 582 (961)
..-+..+...+..++.++..+..+...+...|+....+++..+.+++.++.-+=.+-.+|+.++.++.++-...-..-+.
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555666666666666666666666666666666666666666666666666666666666666665555555
Q ss_pred HHHHHHHHHH
Q 002131 583 CSEQEKTIAG 592 (961)
Q Consensus 583 Ik~lEKtIe~ 592 (961)
+.-+++.++.
T Consensus 248 l~yLe~qle~ 257 (267)
T PF10234_consen 248 LDYLEHQLEE 257 (267)
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 355
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=78.84 E-value=65 Score=31.16 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 557 CIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 557 ~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
..................+|..|...|..+...|..+...+
T Consensus 64 rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 64 RAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555556666666666666666665555
No 356
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=78.63 E-value=55 Score=30.20 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002131 869 IDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLL 929 (961)
Q Consensus 869 ~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~ 929 (961)
.++.....-+..+...+......+..+..++..+...+.....++..+..-++.-......
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~ 105 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQ 105 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777778888888888888888888888888877777776666655443
No 357
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.11 E-value=20 Score=34.01 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 482 RERVRELAEQNVSLQREVSTFNEREAESRSMITHSE 517 (961)
Q Consensus 482 rERlreLeEknvsLqrEIe~leeKi~El~~kIe~le 517 (961)
-+++-.|.++...++.+++.+..+.+.+...|..+.
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 345556666666666666666666666666665553
No 358
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.04 E-value=40 Score=30.76 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 547 KFRAAEADLYCIKRNFEEKEMECKDLQKSIT 577 (961)
Q Consensus 547 e~qeaeEeld~iR~e~eEleeei~eleKeIa 577 (961)
+.+.++..++.+..+.+.++++...-+..|-
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433333
No 359
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=77.91 E-value=73 Score=34.59 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 532 EENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRT 582 (961)
Q Consensus 532 eELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~ 582 (961)
..|+.++..+.++...+..++..+..++..|..........+++++.|...
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555666666666666666666666666666666666666544
No 360
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=77.70 E-value=24 Score=42.55 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 483 ERVRELAEQNVSLQREVSTFNEREAESRSMITHS 516 (961)
Q Consensus 483 ERlreLeEknvsLqrEIe~leeKi~El~~kIe~l 516 (961)
++++.|+.+...++.++..+..++..+...+..+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666655555555
No 361
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=77.27 E-value=12 Score=41.33 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 546 EKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDG 596 (961)
Q Consensus 546 ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqE 596 (961)
.-+.....-+|.||....+++++..+....|..|+..++.++..=.+|-++
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778899999999999999999999999999998888885555544
No 362
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=76.93 E-value=1.2e+02 Score=34.51 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
-||..-|....+-..-..+.+....-....+..||+..-++|. .+-+++..+++.+-.++..+..++..++....+.
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~---SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIA---SREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888888888888888888888888877766654 2333555555555555444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 545 GEKFRAAEADLYCIKRNFEEKEME 568 (961)
Q Consensus 545 ~ee~qeaeEeld~iR~e~eEleee 568 (961)
..-..+-.+.++.+-.+++.++++
T Consensus 300 ~~gv~~rT~~L~eVm~e~E~~Kqe 323 (384)
T KOG0972|consen 300 SVGVSSRTETLDEVMDEIEQLKQE 323 (384)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444333
No 363
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=76.59 E-value=1.6e+02 Score=34.53 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhHhhhcchhhhhhHH
Q 002131 542 SELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDG---------FSDQIEKKPALDKYDK 612 (961)
Q Consensus 542 eEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqE---------L~eEleke~~vee~ek 612 (961)
.+.+.....+-..+..++..-..-+.-+.++.++|..|.....++-.+|+-|..= |+.-+ +.+.+.+.-.
T Consensus 60 ~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~-~~r~Y~e~a~ 138 (383)
T PF04100_consen 60 EEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELA-KKRQYKEIAS 138 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 3333334444444444455566666666777777777777777777775554432 31222 2224666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 613 HVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHEN 649 (961)
Q Consensus 613 ~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl 649 (961)
.+..+..-...+...+. -.+|..+-..+..|+.++
T Consensus 139 ~L~av~~L~~~F~~yks--i~~I~~L~~~i~~l~~~L 173 (383)
T PF04100_consen 139 LLQAVKELLEHFKPYKS--IPQIAELSKRIDQLQNEL 173 (383)
T ss_pred HHHHHHHHHHHHHcccC--cHHHHHHHHHHHHHHHHH
Confidence 66666665555554432 234555555555544443
No 364
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=76.52 E-value=1.5e+02 Score=34.02 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
+..+.+.+..+.+++++|..++..+...+..
T Consensus 80 ~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 80 EESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 365
>PRK00106 hypothetical protein; Provisional
Probab=76.41 E-value=2e+02 Score=35.48 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=12.5
Q ss_pred HHHHHHHHhc--------------cccCCCCC
Q 002131 675 WTRICCLQNQ--------------GISMLNES 692 (961)
Q Consensus 675 ~~~I~~lq~q--------------~lS~~d~n 692 (961)
-++|+.+.+- .||.|||=
T Consensus 245 GrNir~~E~~tGvdliiddtp~~v~lS~fdpv 276 (535)
T PRK00106 245 GRNIRTLESLTGIDVIIDDTPEVVVLSGFDPI 276 (535)
T ss_pred cchHHHHHHHhCceEEEcCCCCeEEEeCCChH
Confidence 5667777665 77888874
No 366
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=76.14 E-value=12 Score=42.71 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 516 SEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 516 leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
+...+..++..++..+..|...+..+.++...+..++.+++....+...++.++..++..+.+...-+..+..+
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 33344444444444444444444444444444444444443334444444444444444444444444444444
No 367
>PRK09343 prefoldin subunit beta; Provisional
Probab=75.61 E-value=67 Score=31.73 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002131 570 KDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 570 ~eleKeIa~Lq~~Ik~lEKt 589 (961)
..+...+..+..++.+++.+
T Consensus 24 ~~~~~q~~~le~q~~e~~~~ 43 (121)
T PRK09343 24 ERLLQQKSQIDLELREINKA 43 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443
No 368
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=75.19 E-value=1.7e+02 Score=34.14 Aligned_cols=14 Identities=0% Similarity=-0.028 Sum_probs=7.3
Q ss_pred CcchhhhhccCCCC
Q 002131 286 PITIEDIYCGSTNR 299 (961)
Q Consensus 286 ~~~~~d~~~~~~~~ 299 (961)
++.+.++|.+-.+.
T Consensus 38 ~l~~~~A~~kF~~~ 51 (388)
T PF04912_consen 38 RLNPDEARSKFKGA 51 (388)
T ss_pred CCCHHHHHHHhCcC
Confidence 45555666553333
No 369
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=75.19 E-value=1.1e+02 Score=31.90 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002131 628 EMSLRREIESYRVEVDSLRHE 648 (961)
Q Consensus 628 eE~LReELEsle~EIEsLReE 648 (961)
..++..+|..++.+|++++-+
T Consensus 133 ~~ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 133 NNKIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544
No 370
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=74.86 E-value=1.3e+02 Score=32.57 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQME 477 (961)
Q Consensus 465 nE~~~kI~~~EsE 477 (961)
+.|..-...++..
T Consensus 132 naW~~~n~~Le~~ 144 (221)
T PF05700_consen 132 NAWLIHNEQLEAM 144 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 5555444333333
No 371
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=74.54 E-value=20 Score=43.58 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 495 LQREVSTFNEREAESRSMITHSEQQLKDLTR 525 (961)
Q Consensus 495 LqrEIe~leeKi~El~~kIe~leeqIe~lts 525 (961)
..-|+.+++.|..++...|+.+..+|+.++.
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~ 121 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKR 121 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344555555555555555555444443333
No 372
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=73.68 E-value=83 Score=31.45 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhchHHH
Q 002131 810 SKELEVEQLQAELATAVRGNDIL 832 (961)
Q Consensus 810 ~ee~eleqlq~elas~~~~~~~l 832 (961)
..-.++++++.++...+.....+
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~l 32 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQL 32 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665333333
No 373
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=73.68 E-value=82 Score=31.40 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 487 ELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKE 566 (961)
Q Consensus 487 eLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEle 566 (961)
..+.-...+..+++.++-.+..+.-.++-...+.+.+......+..+++..+..+.+++.++..++..+.+. .+|..+-
T Consensus 43 ~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k-~eyd~La 121 (139)
T PF05615_consen 43 ESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNK-EEYDALA 121 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344455667778888888888888888888888888888888888888888888888888888887776443 3444443
No 374
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=73.59 E-value=1.6e+02 Score=32.90 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
|.|-..+=.....+-.|...+..++---.+|-.+++......+++++-+..++.+++......- +...
T Consensus 102 NaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~------------~~~~ 169 (254)
T KOG2196|consen 102 NAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGHTY------------LSRA 169 (254)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh------------hhhh
Confidence 5566555555555555555555555555555555555555555555555555444443222110 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 545 GEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRT 582 (961)
Q Consensus 545 ~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~ 582 (961)
..++..+-..++.+-.+++.+..++.++-+.|+.....
T Consensus 170 D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~ 207 (254)
T KOG2196|consen 170 DVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKT 207 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCc
Confidence 44445555555556666666666666665555554443
No 375
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.17 E-value=3.1e+02 Score=36.20 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=15.7
Q ss_pred hHHHHHHhHHhhhhhhcchhhhh
Q 002131 358 DVELRRRSKEAEGRVMVLSEELE 380 (961)
Q Consensus 358 d~~l~~~~ke~~~~~~~~~~~~~ 380 (961)
-..+..++|+++.++-.+-..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~l~~~~~ 204 (1042)
T TIGR00618 182 ALMEFAKKKSLHGKAELLTLRSQ 204 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667777888887777666553
No 376
>PRK09343 prefoldin subunit beta; Provisional
Probab=72.77 E-value=64 Score=31.85 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEK 588 (961)
+..+..+...+..++..+..++..+.+++.
T Consensus 20 q~~l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 20 QQQLERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444444444444444444433
No 377
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.73 E-value=1.1e+02 Score=32.51 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002131 638 YRVEVDSLRHENISLLNRL 656 (961)
Q Consensus 638 le~EIEsLReEl~~L~rRL 656 (961)
...|++-|+..+..+...|
T Consensus 168 ~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 168 HQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 378
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=72.66 E-value=1.4e+02 Score=31.97 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=27.1
Q ss_pred HHHHHHHhhhhHHHHHHhh-----hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 407 MSLALEVSGLLQSRIVERA-----SAKEELRM---VKADLESRTRRLEREKVELQSGL 456 (961)
Q Consensus 407 R~i~EEaaGi~Kyk~aerk-----~t~enL~R---i~~ELe~QLepLEkQaekAK~yL 456 (961)
-.-.++|+-.+|..+|++. .++.=|.= |+..|+.++...+.-.......|
T Consensus 33 ~~A~~~Aa~~vk~~lA~kA~qaA~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL 90 (188)
T PF05335_consen 33 AAAAEQAAQQVKNQLADKAAQAAKAAEAALAGKQQIVEQLEQEVREAEAVVQEEKASL 90 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888777 22222222 55555554444444444444444
No 379
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=72.35 E-value=21 Score=33.85 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=38.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHhhhhchhHHhhhhcCC
Q 002131 876 KELKIMKGVLPKVSEERDMMWEEVKQYSE---KNMLLNSEVNVLKKKIEVLDEDLLLKEGQITILKDTIGS 943 (961)
Q Consensus 876 keis~~~g~L~~v~eerd~~~ee~k~lke---~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil~D~I~~ 943 (961)
.+...+...++.+..++..+..++.+++. ....+..++..+++++..+++.+...+.++..+--.|.+
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPN 106 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIPN 106 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33344444455555555555555555555 356666666666777777777666666666665555443
No 380
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=71.92 E-value=49 Score=39.94 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENIS 651 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~ 651 (961)
+.++.+...-...++..+......+..+++.++.++..|+.++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555544444445555544444444444433
No 381
>PRK02119 hypothetical protein; Provisional
Probab=70.78 E-value=28 Score=31.63 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 499 VSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRA 550 (961)
Q Consensus 499 Ie~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qe 550 (961)
+..++.++.+++.++.+.+.-|+.+...+-....+|+.+...+.-+.+++..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666666665555555555555555555555555555444433
No 382
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=70.68 E-value=1.6e+02 Score=37.74 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=7.6
Q ss_pred HHHHhcccCcccc
Q 002131 753 MSALLHEKSSLVA 765 (961)
Q Consensus 753 IlslL~~k~NV~~ 765 (961)
|...|...+.|..
T Consensus 751 v~~~L~~~~~V~~ 763 (782)
T PRK00409 751 VQEFLKKHPSVKS 763 (782)
T ss_pred HHHHHcCCCceee
Confidence 3377776555654
No 383
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=70.67 E-value=94 Score=29.13 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHHHHHHHHH
Q 002131 628 EMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKELWTRICCL 681 (961)
Q Consensus 628 eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El~~~I~~l 681 (961)
...|...+..++..+..+..-.......|+.. ....+...-+.+..+++.+
T Consensus 74 ~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~---~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 74 LKVLEQQLESLTQKQEKLSHAINFTEEALNSG---DPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CChHHHHHHHHHHHHHHHH
Confidence 45566666777777777766666666665542 2223444444455555443
No 384
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=70.57 E-value=3.2e+02 Score=35.15 Aligned_cols=166 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 491 QNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECK 570 (961)
Q Consensus 491 knvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~ 570 (961)
+-..|........+=+..+..-...+...+.....+++.+...|..-...-.++...|+.+...++.+-..+..+++++-
T Consensus 841 K~~~l~kns~k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~ 920 (1259)
T KOG0163|consen 841 KINALLKNSLKTIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQI 920 (1259)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 571 DLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENI 650 (961)
Q Consensus 571 eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~ 650 (961)
+-.+..-..+.....-.++.+..+++-.++.++. -.+.+..+.+..+|.++..+++.+.+-.++--++--.+-.++-.
T Consensus 921 ~e~er~rk~qE~~E~ER~rrEaeek~rre~ee~k--~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k 998 (1259)
T KOG0163|consen 921 EELERLRKIQELAEAERKRREAEEKRRREEEEKK--RAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAK 998 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhh
Q 002131 651 SLLNRLKG 658 (961)
Q Consensus 651 ~L~rRLq~ 658 (961)
.....-|+
T Consensus 999 ~q~~~Eqe 1006 (1259)
T KOG0163|consen 999 RQNQLEQE 1006 (1259)
T ss_pred HHhHHHHH
No 385
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=70.26 E-value=48 Score=39.91 Aligned_cols=47 Identities=26% Similarity=0.377 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 470 KLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHS 516 (961)
Q Consensus 470 kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~l 516 (961)
.|+.+-...+.++.++..|..+|..|+.|-+.+.++...+..+|..-
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45556666667777777777777777777777766666666655443
No 386
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.01 E-value=48 Score=30.24 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=29.6
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002131 853 LELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLK 917 (961)
Q Consensus 853 LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lk 917 (961)
||.++.-.+|.|.-||-++.|....-..+...-..+...|+.+..+..+++.....++..+..|-
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555544444333333333333444444444444444444444444444443
No 387
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=69.96 E-value=1.2e+02 Score=30.68 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 485 VRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEE 564 (961)
Q Consensus 485 lreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eE 564 (961)
+.+.+..-..+..++.+++.+...+..+=...-.+........+.--.++.++...+++.-...... ....-.+.+|+.
T Consensus 15 ~sfaA~~~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~-~~~r~yk~eYk~ 93 (126)
T PF09403_consen 15 ISFAATATASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQD-SKVRWYKDEYKE 93 (126)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGSTTHHHHHH
T ss_pred HHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cchhHHHHHHHH
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHH
Q 002131 565 KEME----CKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 565 leee----i~eleKeIa~Lq~~Ik~lEK 588 (961)
+-.+ ..+++++|+..+..|.+.++
T Consensus 94 llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 94 LLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 388
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=69.96 E-value=42 Score=38.74 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 539 QNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 539 qeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
++++++.+++++.++.-...+...+++..-+...-+.|+.-+..++.+.+++.++....
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~ 62 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSL 62 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34444455555554444444555555555555555555555555555555555555443
No 389
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=69.78 E-value=63 Score=28.71 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 550 AAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLR 594 (961)
Q Consensus 550 eaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~Lr 594 (961)
.+.+++..++......+..+.+.++....|...|..+++.++.++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555555555555555555555554443
No 390
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=69.29 E-value=1.6e+02 Score=32.08 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 491 QNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEME 568 (961)
Q Consensus 491 knvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleee 568 (961)
-..+++..|..+...+++++- =..|+.++..+..++..+....+.+.+.+..|..+...+...++++.++-+.
T Consensus 10 ~~d~lq~~i~~as~~lNd~TG-----Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 10 YMDSLQETIFTASQALNDVTG-----YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHhccC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666666666666553 1345666666667777777777777777777888877777777777776554
No 391
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=69.20 E-value=2.8e+02 Score=34.04 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGL 456 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yL 456 (961)
|+.--..-.+-|..|+..+..-+
T Consensus 296 il~sstes~e~L~qqV~qs~EKI 318 (518)
T PF10212_consen 296 ILLSSTESREGLAQQVQQSQEKI 318 (518)
T ss_pred HHhhhHHhHHHHHHHHHHHHHHH
Confidence 44433444455555555555444
No 392
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=69.14 E-value=2.3e+02 Score=33.06 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISL 652 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L 652 (961)
+++++...+-++.++++++....-++++.++++.-+..+...+.-+
T Consensus 247 i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 247 IEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 5555555666666666666666666666666665555555444333
No 393
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=69.03 E-value=1.4e+02 Score=38.43 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=5.5
Q ss_pred cccccccccchhh
Q 002131 235 KGTRLRFSSRDWV 247 (961)
Q Consensus 235 ~~~~~~~~~~~~~ 247 (961)
.|...++....|+
T Consensus 218 sg~t~y~ep~~~~ 230 (782)
T PRK00409 218 SGATLYIEPQSVV 230 (782)
T ss_pred CCCEEEEEcHHHH
Confidence 3433444444444
No 394
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=68.92 E-value=1.6e+02 Score=33.25 Aligned_cols=56 Identities=23% Similarity=0.314 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 523 LTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSE 585 (961)
Q Consensus 523 ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~ 585 (961)
...+++...+++...++++.++..+..+. +..+.+++.+...+.+.|.-+...+..
T Consensus 205 ~~~ELe~~~EeL~~~Eke~~e~~~~i~e~-------~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 205 KKEELEELEEELKQKEKEVKEIKERITEM-------KGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333 444555555555555555555554443
No 395
>COG5283 Phage-related tail protein [Function unknown]
Probab=68.91 E-value=4.1e+02 Score=35.77 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 488 LAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEM 567 (961)
Q Consensus 488 LeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eElee 567 (961)
|.+..+.-.++...++.+.+-..+-+..-....+.+-..+++.+.-++++.+++.|...-.+..+..++.+-.++-..++
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555555555555555666666666666666666666666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 002131 568 ECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEK 603 (961)
Q Consensus 568 ei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eElek 603 (961)
....+.....+...+...+++.|..+.-.+ ..+.+
T Consensus 107 ~~~sas~q~~~a~~q~~~~~~~iq~~~~~i-s~t~k 141 (1213)
T COG5283 107 KLRSLSGQFGVASEQLMLQQKEIQRLQYAI-STLNK 141 (1213)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHHH-Hhhhh
Confidence 777777777788777777788777777777 44444
No 396
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=68.85 E-value=2.5e+02 Score=33.27 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 002131 525 RRAEQYTEENGDLRQNLSELGEK-FRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEK 603 (961)
Q Consensus 525 selEeleeELeeleqeleEl~ee-~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eElek 603 (961)
.+++.++.--+.+-.-...+-++ .+.++..+..+-.+..+++.+-.+++..+.-.+..+...+++-...++.+..+-..
T Consensus 263 ~el~siRr~Cd~lP~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~r 342 (442)
T PF06637_consen 263 PELESIRRTCDHLPKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECAR 342 (442)
T ss_pred chHHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666555544444443 34567778888888888999999999998888888888888877766666333322
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 604 KPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRL 656 (961)
Q Consensus 604 e~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRL 656 (961)
.....-+|...|.++++.|..+|+..+.+++.++.++..-..-|
T Consensus 343 ---------Q~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~~v~~saL 386 (442)
T PF06637_consen 343 ---------QTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSAL 386 (442)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 23334455566666777777777777777777766665544443
No 397
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=68.78 E-value=2.3e+02 Score=32.85 Aligned_cols=30 Identities=17% Similarity=0.056 Sum_probs=18.6
Q ss_pred hhHHHHHHhcChHHHHHHHHHHhhhhHHHH
Q 002131 392 VPAMIQTIRILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 392 ~~~~~~~i~~~~edRR~i~EEaaGi~Kyk~ 421 (961)
+|.....|-.+.+--...+++...++.|=-
T Consensus 20 ~~~~eekik~L~~~~~d~~e~~~~v~~~~k 49 (391)
T KOG1850|consen 20 AEKVEEKIKKLAESEKDNAELKIKVLDYDK 49 (391)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555555556667777777777643
No 398
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.26 E-value=71 Score=30.79 Aligned_cols=29 Identities=7% Similarity=0.193 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQE 587 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lE 587 (961)
+..+..+..++..++..+......+++++
T Consensus 16 q~~~~~l~~q~~~le~~~~E~~~v~~eL~ 44 (110)
T TIGR02338 16 QQQLQAVATQKQQVEAQLKEAEKALEELE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444433
No 399
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=68.08 E-value=2.9e+02 Score=33.74 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 533 ENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQ-KSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 533 ELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~ele-KeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
+++-+++++.-...-...-...++.+..-+.........-+ +=|...+..++.+.+-|+..++.+
T Consensus 141 q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe~Er~~m 206 (508)
T PF00901_consen 141 QIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKNAIEVEREGM 206 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33333334333333333333334444433333333332222 235666677777777666666554
No 400
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=67.68 E-value=94 Score=31.08 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 613 HVALLQREQMRLTGVEMSLRREI 635 (961)
Q Consensus 613 ~Ie~lq~ElerLt~~eE~LReEL 635 (961)
+++.+.-++.+|..-++.+++++
T Consensus 78 r~E~Le~ri~tLekQe~~l~e~l 100 (119)
T COG1382 78 RKETLELRIKTLEKQEEKLQERL 100 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 401
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=67.67 E-value=1e+02 Score=28.40 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002131 477 EEQRLRERVRELAEQNVSLQR 497 (961)
Q Consensus 477 Ekk~LrERlreLeEknvsLqr 497 (961)
.......++..|......+..
T Consensus 13 ~~~~~~~~l~~L~~~~~~~~~ 33 (123)
T PF02050_consen 13 ELQEAEEQLEQLQQERQEYQE 33 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 402
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=67.66 E-value=11 Score=39.17 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhH-hhhhHHHHHHHHHHH
Q 002131 627 VEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALT-MKLDKELWTRICCLQ 682 (961)
Q Consensus 627 ~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~-~kl~~El~~~I~~lq 682 (961)
+.++||.||..++.||..|++-|....++..+++....... ..|.+.|...+++.|
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq 86 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQ 86 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhh
Confidence 36889999999999999999999999999999887766544 356666643333333
No 403
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=67.41 E-value=21 Score=38.28 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 477 EEQRLRERVRELAEQNVSLQREVST 501 (961)
Q Consensus 477 Ekk~LrERlreLeEknvsLqrEIe~ 501 (961)
|+.+|+-+|.+|+++..+.+.+.+.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555544444443
No 404
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=67.25 E-value=36 Score=41.51 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 482 RERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 482 rERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
..++++|+-+...|+-+|+.+..++++++..|..- +.++..++.+++.++..+.|+
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~-------q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQK-------QLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-------HHHHHHHHhHHHHHHHHHHHH
Confidence 34556666666666666666665555555544443 334444444444444443333
No 405
>PTZ00464 SNF-7-like protein; Provisional
Probab=67.08 E-value=1.9e+02 Score=31.39 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 479 QRLRERVRELAEQNVSLQREVSTFNEREA 507 (961)
Q Consensus 479 k~LrERlreLeEknvsLqrEIe~leeKi~ 507 (961)
+.+++|+..|..+...+..|+..+...+.
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k 49 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQ 49 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554443
No 406
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=66.80 E-value=1.5e+02 Score=30.09 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESR 510 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~ 510 (961)
.+++.+|+.+|.-++...+.+.+..---..|++|+..+......+.
T Consensus 9 E~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLe 54 (134)
T PF15233_consen 9 EDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLE 54 (134)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4567777777777777777777777777777777777766555443
No 407
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=66.55 E-value=1.5e+02 Score=30.24 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Q 002131 470 KLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITH-------------SEQQLKDLTRRAEQYTEENGD 536 (961)
Q Consensus 470 kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~-------------leeqIe~ltselEeleeELee 536 (961)
.|.....++..+++|+.....-.-+-..+|.....+..+++.+..+ ...++..+..+++.-+.++..
T Consensus 16 eL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv~nkq~~l~A 95 (136)
T PF11570_consen 16 ELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQKDVQNKQNKLKA 95 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555444444444444444444444442222111 123333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 537 LRQNLSELGEKFRAAEADLYCIKRNFE 563 (961)
Q Consensus 537 leqeleEl~ee~qeaeEeld~iR~e~e 563 (961)
.+.++.++.+.+.-.++.+.......+
T Consensus 96 A~~~l~~~~~el~~~~~al~~A~e~Rk 122 (136)
T PF11570_consen 96 AQKELNAADEELNRIQAALSQAMERRK 122 (136)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 444444444444444444433333333
No 408
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=66.46 E-value=79 Score=30.84 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 524 TRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 524 tselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
-.++.+++....-+++.|-+-+.....+ +..+..++..+..++.++..|.=.-+.+.++++.|..++
T Consensus 4 a~eYsKLraQ~~vLKKaVieEQ~k~~~L-------~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAVIEEQAKNAEL-------KEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666555544 555666777777777777777777777777777777777
No 409
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=66.15 E-value=63 Score=33.50 Aligned_cols=90 Identities=12% Similarity=0.134 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 002131 475 QMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEK-FRAAEA 553 (961)
Q Consensus 475 EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee-~qeaeE 553 (961)
...+....+|+...+...-++...+..-...+..+.+++++++..++.+...++.+..++.-+.....+.-.- .++.++
T Consensus 43 ne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~e 122 (157)
T COG3352 43 NEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEE 122 (157)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHH
Confidence 3456667778888888888888888888888899999999999999998888888888888777665544443 444444
Q ss_pred HHHHHHHHHHH
Q 002131 554 DLYCIKRNFEE 564 (961)
Q Consensus 554 eld~iR~e~eE 564 (961)
.+..++..++.
T Consensus 123 qV~el~~i~em 133 (157)
T COG3352 123 QVNELKMIVEM 133 (157)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 410
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=66.12 E-value=1.2e+02 Score=28.80 Aligned_cols=31 Identities=10% Similarity=0.122 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 486 RELAEQNVSLQREVSTFNEREAESRSMITHS 516 (961)
Q Consensus 486 reLeEknvsLqrEIe~leeKi~El~~kIe~l 516 (961)
..|.++...+...+..++..+.++..-++++
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL 39 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENKKALEEL 39 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444333
No 411
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=66.07 E-value=1.1e+02 Score=28.19 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002131 555 LYCIKRNFEEKEMECKDLQ 573 (961)
Q Consensus 555 ld~iR~e~eEleeei~ele 573 (961)
+..+++++..+.+....++
T Consensus 66 L~~ikkrm~~l~~~l~~lk 84 (92)
T PF14712_consen 66 LVNIKKRMSNLHERLQKLK 84 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 412
>PRK04406 hypothetical protein; Provisional
Probab=65.97 E-value=43 Score=30.71 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 502 FNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFR 549 (961)
Q Consensus 502 leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~q 549 (961)
++.++.+++.++.+.+.-|+.+...+-....+|+.+...+.-+.+++.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555444444444444433
No 413
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=65.92 E-value=1.9e+02 Score=30.78 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 002131 477 EEQRLRERVRELAEQ 491 (961)
Q Consensus 477 Ekk~LrERlreLeEk 491 (961)
....++.+..+|+.+
T Consensus 24 KV~qYr~rc~ele~~ 38 (182)
T PF15035_consen 24 KVLQYRKRCAELEQQ 38 (182)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444333
No 414
>PTZ00440 reticulocyte binding protein 2-like protein; Provisional
Probab=65.59 E-value=6.5e+02 Score=36.94 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhhH
Q 002131 404 EEKMSLALEVSGLLQ 418 (961)
Q Consensus 404 edRR~i~EEaaGi~K 418 (961)
++=-.|+.|++.+++
T Consensus 635 gdi~~L~~els~fv~ 649 (2722)
T PTZ00440 635 GDLQELLDELSHFLD 649 (2722)
T ss_pred hhHHHHHHHHHHHHH
Confidence 455678889999885
No 415
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=65.57 E-value=2.7e+02 Score=32.56 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 633 REIESYRVEVDSLRHENISLLNRL 656 (961)
Q Consensus 633 eELEsle~EIEsLReEl~~L~rRL 656 (961)
.++...+.++...+.++......+
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666665555555
No 416
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=65.55 E-value=36 Score=36.52 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDL 537 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeel 537 (961)
..|.-=.+.|+.-..+++++++.+++... .-...+..+.+-|+.+++|+..|+.=+..-+.+|+.|
T Consensus 128 ~~~~lvk~e~EqLL~YK~~ql~~~~~~~~-------~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 128 SKPALVKREFEQLLDYKERQLRELEEGRS-------KSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhccCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455666777777777777765211 1222334444445555555555554444444444443
No 417
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.02 E-value=3.5e+02 Score=33.61 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=8.2
Q ss_pred ChHHHHHHHHHHhhh
Q 002131 402 LTEEKMSLALEVSGL 416 (961)
Q Consensus 402 ~~edRR~i~EEaaGi 416 (961)
+|+.-|.|+..-+|.
T Consensus 137 ~~~~~r~lLD~f~~~ 151 (557)
T COG0497 137 KPELQRQLLDAFAGL 151 (557)
T ss_pred ChHHHHHHHHHhcCc
Confidence 355556665555554
No 418
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.92 E-value=53 Score=39.50 Aligned_cols=29 Identities=34% Similarity=0.403 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 630 SLRREIESYRVEVDSLRHENISLLNRLKG 658 (961)
Q Consensus 630 ~LReELEsle~EIEsLReEl~~L~rRLq~ 658 (961)
++..+.+++..++..+...+..|.++|.+
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444555555555533
No 419
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=64.64 E-value=2.5e+02 Score=31.85 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHhhhcchhhh
Q 002131 532 EENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT---IAGLRDGFSDQIEKKPALD 608 (961)
Q Consensus 532 eELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt---Ie~LrqEL~eEleke~~ve 608 (961)
.++..+..+-.-++.++....+.+..++.+++.-+++...+--....|+.....++.. .....-....++|.+ -.
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gte--rq 86 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTE--RQ 86 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccch--hh
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHH-HHH
Q 002131 609 KYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKEL-WTR 677 (961)
Q Consensus 609 e~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El-~~~ 677 (961)
.+-..|++-+.+-..|.-..+.|+.++..+..--+-+|+-...-..+.+..-.+ ...+-..|| |++
T Consensus 87 dLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~ase---Naarneeelqwrr 153 (389)
T KOG4687|consen 87 DLAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASE---NAARNEEELQWRR 153 (389)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhccccc---ccccchHHHHhhH
No 420
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=64.61 E-value=2.1e+02 Score=30.95 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELA 489 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLe 489 (961)
..|...+.....-......|+..|+
T Consensus 100 ~~w~~al~na~a~lehq~~R~~NLe 124 (221)
T PF05700_consen 100 EAWKEALDNAYAQLEHQRLRLENLE 124 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888887777654
No 421
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=64.56 E-value=2.4e+02 Score=31.55 Aligned_cols=8 Identities=0% Similarity=-0.110 Sum_probs=4.9
Q ss_pred cccCCCCC
Q 002131 685 GISMLNES 692 (961)
Q Consensus 685 ~lS~~d~n 692 (961)
-.+|||=.
T Consensus 207 i~AP~dG~ 214 (327)
T TIGR02971 207 VKAPIDGR 214 (327)
T ss_pred EECCCCeE
Confidence 56666655
No 422
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=64.28 E-value=3.2e+02 Score=32.85 Aligned_cols=87 Identities=15% Similarity=0.299 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHHHH--------
Q 002131 610 YDKHVALLQREQMRLTGVEMSLRREIES-----YRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKELWT-------- 676 (961)
Q Consensus 610 ~ek~Ie~lq~ElerLt~~eE~LReELEs-----le~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El~~-------- 676 (961)
+...-+.+-..+..|+...+.||.-+.. ...+++.+..++......|+.++.- ++..+.+|+
T Consensus 215 L~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~-----i~~eKP~WkKiWE~EL~ 289 (426)
T smart00806 215 LSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEY-----IDIEKPIWKKIWEAELD 289 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HhhcChHHHHHHHHHHH
Confidence 3334445555566666666666655443 2345555555666666666555543 333444433
Q ss_pred HHHHHHhccccCCCCChHHHHHHHHHHhc
Q 002131 677 RICCLQNQGISMLNESTQLCSQLLEFIKG 705 (961)
Q Consensus 677 ~I~~lq~q~lS~~d~n~~lm~KLL~~IK~ 705 (961)
.||.=|. ||++-..= |..|.+.++.
T Consensus 290 ~VcEEqq-fL~lQedL---~~DL~dDL~k 314 (426)
T smart00806 290 KVCEEQQ-FLTLQEDL---IADLKEDLEK 314 (426)
T ss_pred HHHHHHH-HHHHHHHH---HHHHHHHHHH
Confidence 3454444 77776544 7888777774
No 423
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=64.27 E-value=1.7e+02 Score=29.66 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcc
Q 002131 570 KDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKK 604 (961)
Q Consensus 570 ~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke 604 (961)
..+++++..|---+..++..+...+..| ..+|..
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rL-k~LG~e 113 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERL-KELGEE 113 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHH-HHcCCC
Confidence 3445555555555555555555555555 555544
No 424
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=64.10 E-value=2.7e+02 Score=32.07 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 485 VRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEE 564 (961)
Q Consensus 485 lreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eE 564 (961)
|..|+.+|..|.++|+-+++.-.-+...-...-..++.|+..+.++++-+.. -..+.-.+...+..+.+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLa-----------gGaaaNavrdYqrq~~e 70 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILA-----------GGAAANAVRDYQRQVQE 70 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cchHHHHHHHHHHHHHH
Confidence 3567788888888888777665555444333333333333333333322221 12223334455777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 565 KEMECKDLQKSITRLLRTCSEQEKTIAG 592 (961)
Q Consensus 565 leeei~eleKeIa~Lq~~Ik~lEKtIe~ 592 (961)
+.++...|+.++++.+-.-++.-...+.
T Consensus 71 lneEkrtLeRELARaKV~aNRVA~vvAN 98 (351)
T PF07058_consen 71 LNEEKRTLERELARAKVSANRVATVVAN 98 (351)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 8888888888888888777766655443
No 425
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=62.99 E-value=3.3e+02 Score=32.63 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQRE 498 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrE 498 (961)
+.+..+|++++++--..+.-+..|-...+.|..-
T Consensus 161 nKlm~ki~Klen~t~~kq~~leQLRre~V~lent 194 (552)
T KOG2129|consen 161 NKLMNKIRKLENKTLLKQNTLEQLRREAVQLENT 194 (552)
T ss_pred HHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhH
Confidence 7777888888877766666555555555544433
No 426
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=62.82 E-value=37 Score=30.34 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 504 EREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFR 549 (961)
Q Consensus 504 eKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~q 549 (961)
.++.+++.++.+.+.-|+.+...+-....+|+.++..+..+.++..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333333333
No 427
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=62.61 E-value=2.6e+02 Score=31.28 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcc---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 564 EKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKK---------PALDKYDKHVALLQREQMRLTGVEMSLRR 633 (961)
Q Consensus 564 Eleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke---------~~vee~ek~Ie~lq~ElerLt~~eE~LRe 633 (961)
....++..+..+|+.++.++...++++..+++....|..+. +........++..+.++..++........
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 210 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIA 210 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34445555666666666666666666666666655555442 33555555555555555555444333333
No 428
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=62.43 E-value=28 Score=37.02 Aligned_cols=77 Identities=10% Similarity=0.021 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh-HhhhhHHHHHHHHHHHhccccCCCCChHHHHHHHHHHh
Q 002131 626 GVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAAL-TMKLDKELWTRICCLQNQGISMLNESTQLCSQLLEFIK 704 (961)
Q Consensus 626 ~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~-~~kl~~El~~~I~~lq~q~lS~~d~n~~lm~KLL~~IK 704 (961)
.++++|+.||..++.||..||+-|....+...+++....+. ...|.+.|.+...+.|. |...++.=.
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d~q~------------st~y~kt~~ 111 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKDVQA------------STAYVKTSQ 111 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhhh------------HHHHHHhhh
Confidence 34678999999999999999999999999999988887764 34566666555555555 555554433
Q ss_pred cccccccccc
Q 002131 705 GKAGQLSETK 714 (961)
Q Consensus 705 ~k~~~~~sVK 714 (961)
....|...|.
T Consensus 112 ~~g~~~~~vy 121 (208)
T KOG4010|consen 112 SVGTFTKTVY 121 (208)
T ss_pred hhccccceee
Confidence 5556765443
No 429
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.17 E-value=46 Score=30.18 Aligned_cols=49 Identities=29% Similarity=0.344 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 502 FNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRA 550 (961)
Q Consensus 502 leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qe 550 (961)
+++++.+++.++.+.+.-|+.+...+-....+|..+...+..+.+++..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555555544444444443
No 430
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=61.65 E-value=92 Score=32.37 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=63.5
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHH
Q 002131 842 NLSCVTHKLKDLELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSE-VNVLKKKI 920 (961)
Q Consensus 842 els~~~~k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~E-v~~lkk~i 920 (961)
.+-.+-.+..+++.++.+..+.+.-..-.++....+|.+++..++-|.-.-....+++.|++.++..--.- +..+.+.+
T Consensus 45 ~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV 124 (157)
T COG3352 45 VIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQV 124 (157)
T ss_pred HHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHH
Confidence 34445577888899999988877777778888888888888888888888888888888888877654433 55555555
Q ss_pred HHHHHH
Q 002131 921 EVLDED 926 (961)
Q Consensus 921 e~Leed 926 (961)
..|+..
T Consensus 125 ~el~~i 130 (157)
T COG3352 125 NELKMI 130 (157)
T ss_pred HHHHHH
Confidence 555443
No 431
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=61.60 E-value=62 Score=35.88 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=49.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHHh
Q 002131 880 IMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITIL 937 (961)
Q Consensus 880 ~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil 937 (961)
.--++|+-|...||...+...++-+++...+.++..|+.+++.|+.|-+..=.+|-=|
T Consensus 76 ~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 76 GDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999999999999999966544444433
No 432
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.50 E-value=2.3e+02 Score=36.46 Aligned_cols=33 Identities=9% Similarity=-0.014 Sum_probs=17.0
Q ss_pred ccchhhhccHHHHH-HHhcccCcccccccccccccccC
Q 002131 741 RKIESLITSLQTMS-ALLHEKSSLVASKSQSLHEDVNL 777 (961)
Q Consensus 741 ~Gka~l~~sl~TIl-slL~~k~NV~~~~~~SG~~~sgg 777 (961)
.|+- ++-|...+ ..|...+.|.. .+.|...-||
T Consensus 729 HGkG--tG~Lr~~v~~~L~~~~~V~~--f~~a~~~~GG 762 (771)
T TIGR01069 729 HGKG--SGKLRKGVQELLKNHPKVKS--FRDAPPNDGG 762 (771)
T ss_pred cCCC--hhHHHHHHHHHhcCCcceee--ecccCcccCC
Confidence 4444 44444444 77876566655 2344444455
No 433
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=61.48 E-value=1.5e+02 Score=28.05 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 438 LESRTRRLEREKVELQSGLEKELDRRS--SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSM 512 (961)
Q Consensus 438 Le~QLepLEkQaekAK~yLEKEL~rrq--nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~k 512 (961)
|+.-+..|+..+..+...++..++.-+ .+|...|..+..+..+|.+++......-.+|+.--.....++..+...
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333 455555555555555555555544444444444444444444433333
No 434
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=61.42 E-value=44 Score=29.90 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002131 610 YDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGK 661 (961)
Q Consensus 610 ~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~n 661 (961)
++.+|.+++..+.-+....++|...+..-..+|+.|+.++..+..+|.++.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666666666666667777777777777777777777777777777663
No 435
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.39 E-value=2.4e+02 Score=36.31 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=8.2
Q ss_pred ccccccccccchhhh
Q 002131 234 AKGTRLRFSSRDWVE 248 (961)
Q Consensus 234 ~~~~~~~~~~~~~~~ 248 (961)
+.|+...+....||.
T Consensus 212 ~sg~t~~~ep~~~~~ 226 (771)
T TIGR01069 212 SSGETFYIEPQAIVK 226 (771)
T ss_pred CCCCEEEEEcHHHHH
Confidence 445555555555654
No 436
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=61.11 E-value=1.9e+02 Score=29.26 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSE 585 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~ 585 (961)
+.++..+--=.-+++..+..++..+..
T Consensus 83 q~EldDLL~ll~Dle~K~~kyk~rLk~ 109 (136)
T PF04871_consen 83 QSELDDLLVLLGDLEEKRKKYKERLKE 109 (136)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333333333333344444444444333
No 437
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=61.02 E-value=4e+02 Score=33.28 Aligned_cols=206 Identities=16% Similarity=0.159 Sum_probs=116.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 457 EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGD 536 (961)
Q Consensus 457 EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELee 536 (961)
|+++=..+.++...-.......+.+...|..+.+--..+...+......-..+-.+...+ ..+ .+.++.
T Consensus 26 E~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L-------~~~----~~~~~~ 94 (618)
T PF06419_consen 26 EKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASEL-------REQ----KEELEL 94 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH----HHHHHH
Confidence 444444444555444444444455555555555555555444444444444333333333 222 344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHH
Q 002131 537 LRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVAL 616 (961)
Q Consensus 537 leqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~ 616 (961)
.++-+....++|.--.++.+.+...-..+..+.+.+-.++..++..|..+=. ...-+.++ +. .+...+.++.
T Consensus 95 k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~-~~~~~ag~-~i------M~~~~~~~e~ 166 (618)
T PF06419_consen 95 KKKLLDAFLERFTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCKILLS-TENQRAGL-EI------MEQMSKYLER 166 (618)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhC-CCCchHHH-HH------HHHHHHHHHH
Confidence 6677788888888888999888888667788888888888888888887652 22222223 22 3344556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHHHHHHHHHHhccccCCC
Q 002131 617 LQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKELWTRICCLQNQGISMLN 690 (961)
Q Consensus 617 lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q~lS~~d 690 (961)
.-+++=++. +.+...+..+.- +....+.+-+.-+.+.+...-.=++.=..+|-..+-..|++.|.
T Consensus 167 a~erl~~w~------q~e~~~l~~~~~---~~~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~~~F~~aLt 231 (618)
T PF06419_consen 167 AYERLYRWV------QRECRSLNLDNP---EVSPLLRRALRYLRERPVLFNYCLDEFAEARSKALLRRFLDALT 231 (618)
T ss_pred HHHHHHHHH------HHHHhhhhhcCc---ccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666666665 333333311111 12555666666666776555444443336666666666655553
No 438
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=60.59 E-value=2.1e+02 Score=29.54 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 610 YDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRL 656 (961)
Q Consensus 610 ~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRL 656 (961)
++.-++.++..++.|....++|...|..+...+..+.+++..+..+.
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666677777777777777777776666665544
No 439
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=60.39 E-value=1.8e+02 Score=30.48 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 528 EQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLL 580 (961)
Q Consensus 528 EeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq 580 (961)
..+..+...++.++.+++.+...++.++..+..+....++++..+-.-|.+.+
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444443
No 440
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=60.13 E-value=82 Score=28.37 Aligned_cols=57 Identities=18% Similarity=0.060 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 515 HSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKD 571 (961)
Q Consensus 515 ~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~e 571 (961)
.++.+++.+-...+.++.+...+...+.....+.....+..+..+..++.+...+..
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555555555555556665555555555555555555555555555555444433
No 441
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=59.85 E-value=2.7e+02 Score=30.64 Aligned_cols=233 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH
Q 002131 466 DWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQL-------------KDLTRRAEQYTE 532 (961)
Q Consensus 466 E~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqI-------------e~ltselEelee 532 (961)
++...|... .-...+.+.+..|.+-.......|....+.+.+-...-..+..+. ..+..++..++.
T Consensus 13 ~~~~~v~~~-~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~ 91 (296)
T PF13949_consen 13 EKSEEVRSE-GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYRE 91 (296)
T ss_dssp HHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 002131 533 ENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQ-----------KSITRLLRTCSEQEKTIAGLRDGFSDQI 601 (961)
Q Consensus 533 ELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~ele-----------KeIa~Lq~~Ik~lEKtIe~LrqEL~eEl 601 (961)
-|..+...=..+...+......+.-+-.-...+...+-... ..+..+-..++.+.+....+-.++...+
T Consensus 92 ~L~~A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~ 171 (296)
T PF13949_consen 92 YLEQASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKEKL 171 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcchhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHHH--
Q 002131 602 EKKPALDKYDKHVAL-----LQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKEL-- 674 (961)
Q Consensus 602 eke~~vee~ek~Ie~-----lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~El-- 674 (961)
..+ .+..+.....+ ...-+..--+.-..+...|...-..-+.|-.++.....++.... ........++.-+
T Consensus 172 ~~d-~i~~~l~~~~~~~~~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~-~~~~~~~~r~~~~~~ 249 (296)
T PF13949_consen 172 QND-DISKLLSELNKNGSADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSR-KSDQEQKERESALQR 249 (296)
T ss_dssp ----HHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---SHHHHHHHHHHHH
T ss_pred hhc-cHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Q ss_pred -------HHHHHHHHhc---cccCCCCChHHHHHHHHHHh
Q 002131 675 -------WTRICCLQNQ---GISMLNESTQLCSQLLEFIK 704 (961)
Q Consensus 675 -------~~~I~~lq~q---~lS~~d~n~~lm~KLL~~IK 704 (961)
...|..-=.+ ||+-|-.. +.+|...++
T Consensus 250 l~~a~~~y~el~~~l~eG~~FY~~L~~~---~~~l~~~~~ 286 (296)
T PF13949_consen 250 LEAAYDAYKELSSNLEEGLKFYNDLLEI---LNKLQQKVE 286 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHH
No 442
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=59.83 E-value=1.5e+02 Score=27.53 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 560 RNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGL 593 (961)
Q Consensus 560 ~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~L 593 (961)
..|..+..++..+...|..+..++..++-++..|
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554333
No 443
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=59.83 E-value=77 Score=39.65 Aligned_cols=89 Identities=17% Similarity=0.282 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHHhhhhcC
Q 002131 863 SINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITILKDTIG 942 (961)
Q Consensus 863 ~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil~D~I~ 942 (961)
.|..++.++++..++|..++..+.....+++.+|.++..+..+--.+..=-.........+.+......+++.-++|--.
T Consensus 87 everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q~~~R 166 (632)
T PF14817_consen 87 EVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQDIQR 166 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58888889999999999999999999999999999999999999998888888888888899999988999988888655
Q ss_pred CCCCccccC
Q 002131 943 SKPFDLLAS 951 (961)
Q Consensus 943 ~~~~~~~~s 951 (961)
+.-.|+.-+
T Consensus 167 ~a~~~v~~~ 175 (632)
T PF14817_consen 167 KAKVEVEFG 175 (632)
T ss_pred hccCceeec
Confidence 544444433
No 444
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=59.75 E-value=2.2e+02 Score=29.60 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 547 KFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 547 e~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
+....+..+|.+-+++.-+...|.+-+++...+....++..++...|=..|
T Consensus 85 Ev~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L 135 (159)
T PF04949_consen 85 EVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRL 135 (159)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555555555555555555555554444444
No 445
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=59.62 E-value=2.4e+02 Score=29.89 Aligned_cols=173 Identities=18% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 504 EREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAA---EAD--LYCIKRNFEEKEMECKDLQKSITR 578 (961)
Q Consensus 504 eKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qea---eEe--ld~iR~e~eEleeei~eleKeIa~ 578 (961)
....+..+.+..++.++..+....+.+.....++-..+.++...+... +.. +...=..+......+.++....+.
T Consensus 24 ~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~ 103 (236)
T PF09325_consen 24 EWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQAN 103 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 579 -----LLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLL 653 (961)
Q Consensus 579 -----Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~ 653 (961)
+...+...-.-+...+.=| .. -..+-...+..+..+.......+++...-..-...++.+..++..+.
T Consensus 104 ~~~~~l~~~L~ey~~~~~svk~~l-----~~--R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~ 176 (236)
T PF09325_consen 104 QEEETLGEPLREYLRYIESVKEAL-----NR--RDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAE 176 (236)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Q ss_pred HHhhhcCCchhhhHhhhhHHH----HHHHHHHHh
Q 002131 654 NRLKGNGKESAALTMKLDKEL----WTRICCLQN 683 (961)
Q Consensus 654 rRLq~~~ne~~~~~~kl~~El----~~~I~~lq~ 683 (961)
.++..+..+...++..+..|+ ..++.+++.
T Consensus 177 ~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~ 210 (236)
T PF09325_consen 177 RRVEQAKDEFEEISENIKKELERFEKEKVKDFKS 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 446
>PRK00736 hypothetical protein; Provisional
Probab=59.46 E-value=54 Score=29.43 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 503 NEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRA 550 (961)
Q Consensus 503 eeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qe 550 (961)
+.++.+++.++.+.+.-|+.+...+-....+|..+...+.-+.+++..
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554444444444433
No 447
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=59.44 E-value=2.6e+02 Score=30.34 Aligned_cols=74 Identities=14% Similarity=0.220 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhh
Q 002131 530 YTEENGDLRQNLSELGEKFRAAEADLYCI--------KRNFEEKEMECKDLQKSITRLLRTCSEQEKT----IAGLRDGF 597 (961)
Q Consensus 530 leeELeeleqeleEl~ee~qeaeEeld~i--------R~e~eEleeei~eleKeIa~Lq~~Ik~lEKt----Ie~LrqEL 597 (961)
+-..++.+.....+-+++|..+=+.+..+ ...|+.+..+....++.-......|...+.- ...++++|
T Consensus 26 lvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL 105 (201)
T PF11172_consen 26 LVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQEL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554444332 3333333333333344444444444444433 56666666
Q ss_pred hHhhhcc
Q 002131 598 SDQIEKK 604 (961)
Q Consensus 598 ~eEleke 604 (961)
.+....
T Consensus 106 -~~Y~~~ 111 (201)
T PF11172_consen 106 -DQYSNA 111 (201)
T ss_pred -HHHcCH
Confidence 555433
No 448
>PRK02119 hypothetical protein; Provisional
Probab=58.49 E-value=61 Score=29.52 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002131 610 YDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNG 660 (961)
Q Consensus 610 ~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ 660 (961)
.+.+|.++.+.+.-...-.+.|-.-|..-..+|+.|+.++..+..+|.+.+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555555555555555556666666666666666666666666666654
No 449
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=57.94 E-value=2.9e+02 Score=32.16 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 541 LSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRL 579 (961)
Q Consensus 541 leEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~L 579 (961)
+...+....+++..+|...-.+..+.=+..-++++|..|
T Consensus 14 ~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C 52 (355)
T PF09766_consen 14 IKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKC 52 (355)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444455555543
No 450
>PRK00295 hypothetical protein; Provisional
Probab=57.90 E-value=69 Score=28.74 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 503 NEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRA 550 (961)
Q Consensus 503 eeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qe 550 (961)
++++.+++.++.+.+.-|+.+...+-....+|..+...+..+..++..
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544444454444444444444333
No 451
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=57.90 E-value=2e+02 Score=28.42 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 538 RQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 538 eqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
-+++.+++.+...+++.. ..+.+++++++..+++.+-.++..-...-..+..+...+
T Consensus 9 SKeLVDLQIe~~rL~Eq~---EaE~FELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~ 65 (108)
T PF14739_consen 9 SKELVDLQIETNRLREQH---EAEKFELKNEVLRLENRVLELELHGDKAAPQIADLRHRL 65 (108)
T ss_pred HHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHH
Confidence 344555555555553333 455666666666666666665555444444455554444
No 452
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.89 E-value=19 Score=46.23 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=8.6
Q ss_pred HHHHhhhccCCCCCCCC
Q 002131 264 VERLAQTYVLPRSSSKD 280 (961)
Q Consensus 264 ~~~~~~~~~~~~~~~~~ 280 (961)
++.+++.+..+..++..
T Consensus 246 l~~~s~~~~~~s~~~~~ 262 (847)
T KOG0998|consen 246 LVDLSALNSNPSLSSLS 262 (847)
T ss_pred ccchhcccCCccccccc
Confidence 35556555555544433
No 453
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=57.73 E-value=3.3e+02 Score=30.93 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 528 EQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKE 566 (961)
Q Consensus 528 EeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEle 566 (961)
++.+..|.+.-.....+.++.+-.+.++...|+.++.++
T Consensus 122 q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 122 QSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 454
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=57.60 E-value=4.4e+02 Score=32.30 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 467 WSFKLEKYQMEEQRLRERVRELA 489 (961)
Q Consensus 467 ~~~kI~~~EsEkk~LrERlreLe 489 (961)
...-|.........|..++..+.
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~ 271 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELK 271 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 455
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=57.50 E-value=52 Score=28.72 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 505 REAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAA 551 (961)
Q Consensus 505 Ki~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qea 551 (961)
++.++++++-.++..+..++.+.+.+.+.++.+.+.+..+-.-|+..
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>PRK14011 prefoldin subunit alpha; Provisional
Probab=56.87 E-value=2.4e+02 Score=29.01 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 608 DKYDKHVALLQREQMRLTGVEMSLRREIESYR 639 (961)
Q Consensus 608 ee~ek~Ie~lq~ElerLt~~eE~LReELEsle 639 (961)
+.++++++.+......|++..+++..++..+.
T Consensus 91 ~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~ 122 (144)
T PRK14011 91 EDFKKSVEELDKTKKEGNKKIEELNKEITKLR 122 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 457
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=56.79 E-value=1.2e+02 Score=27.88 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 570 KDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 570 ~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
.+.++.|..|+..--.++=+|--|++.+
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l 30 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERL 30 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3455566666666666666677777777
No 458
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=56.65 E-value=2.3e+02 Score=28.85 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHH
Q 002131 805 REKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSC 845 (961)
Q Consensus 805 kE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~ 845 (961)
+-.|....++|.+++.++++++.-..--+++++....-+.+
T Consensus 14 ~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 14 RAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45688889999999999999995555556666666665555
No 459
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=56.57 E-value=5.8e+02 Score=33.40 Aligned_cols=209 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHH-HHHHHHHHH
Q 002131 426 SAKEELRM---VKADLESRTRRLEREKVELQSGLEKELDRRS------------SDWSFKLEKYQMEEQR-LRERVRELA 489 (961)
Q Consensus 426 ~t~enL~R---i~~ELe~QLepLEkQaekAK~yLEKEL~rrq------------nE~~~kI~~~EsEkk~-LrERlreLe 489 (961)
+|-.++.- -++||+.|+++|.++...-....+.=+.... .-|....+....+-+. ++.-+..-.
T Consensus 617 s~mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~ 696 (984)
T COG4717 617 STMKDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTK 696 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 490 EQNVSLQREVSTFNEREAESRS-----------MITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCI 558 (961)
Q Consensus 490 EknvsLqrEIe~leeKi~El~~-----------kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~i 558 (961)
+.+..|+.++.....++..+-+ .+....++.....+++..+...+.+....--++-.........
T Consensus 697 El~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~---- 772 (984)
T COG4717 697 ELNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELK---- 772 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhh----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDG--FSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIE 636 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqE--L~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELE 636 (961)
..++-.++..+..+..++..++.++..+...|++++.+ + +.+.-. ...+...++.+-.+-.+|.-....+++-|+
T Consensus 773 e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~-a~lr~~--~~slk~~l~e~ar~Wasl~~~~~vl~e~l~ 849 (984)
T COG4717 773 EEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTV-AELRQR--RESLKEDLEEKARKWASLRLAVQVLEEALR 849 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 002131 637 SYRVE 641 (961)
Q Consensus 637 sle~E 641 (961)
.++..
T Consensus 850 ~~ke~ 854 (984)
T COG4717 850 LFKER 854 (984)
T ss_pred HHHhh
No 460
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=56.43 E-value=2.4e+02 Score=28.93 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002131 574 KSITRLLRTCSEQEKTIAGLR 594 (961)
Q Consensus 574 KeIa~Lq~~Ik~lEKtIe~Lr 594 (961)
..|..|+..+..+...|..|+
T Consensus 104 ~~I~~Lq~~~~~~~~ki~~Le 124 (146)
T PF08702_consen 104 SNIRVLQNILRSNRQKIQRLE 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 461
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=56.03 E-value=68 Score=35.63 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 497 REVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLY 556 (961)
Q Consensus 497 rEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld 556 (961)
.+++.++..+......+..+..+|+.++.++..++..++.+.-++++++++......++|
T Consensus 40 ~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 40 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443333333344444444444444444444444444444444444444433333
No 462
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.83 E-value=1.6e+02 Score=28.36 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------------h-------------
Q 002131 555 LYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRD-------------------------G------------- 596 (961)
Q Consensus 555 ld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~Lrq-------------------------E------------- 596 (961)
+..+...+..++.++..+...+..+...+.+++..+..+.. .
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Q ss_pred hhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 597 FSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSL 645 (961)
Q Consensus 597 L~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsL 645 (961)
++..++.. ...++++++.++..+..|.+....++.++..+...+..+
T Consensus 81 ve~~~~eA--~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 81 VEKSLEEA--IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EEecHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 463
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=55.73 E-value=2.6e+02 Score=35.63 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 467 WSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLS 542 (961)
Q Consensus 467 ~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqele 542 (961)
+..++...+-+..++.++++..++....+..+++.++.+-.....+|+-.+.. ..+.+++.+..++.+....++
T Consensus 525 ~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~--~~~~~i~~l~~el~eq~~~~~ 598 (809)
T KOG0247|consen 525 CRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILEST--EYEEEIEALDQELEEQKMELQ 598 (809)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc--hhhhhhHHHHHHHHhhhHHHH
Confidence 33444444445588888888888888888888888888888888877777655 344455555555554444433
No 464
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=55.71 E-value=1.3e+02 Score=29.50 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 439 ESRTRRLEREKVELQSGLEKELDRRS--SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESR 510 (961)
Q Consensus 439 e~QLepLEkQaekAK~yLEKEL~rrq--nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~ 510 (961)
..++..|..|..-+|... |+... .++...|...+..+..+.+++..|.=+|..|..+|+.+...+....
T Consensus 4 a~eYsKLraQ~~vLKKaV---ieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAV---IEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666655 22222 6677777777777777777777777777777777777777766443
No 465
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=55.52 E-value=2.7e+02 Score=29.31 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 572 LQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 572 leKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
+.+.|..|+..+...+.....+-.+|
T Consensus 108 ~~~~i~~L~~~i~~~q~~~~~~i~~L 133 (184)
T PF05791_consen 108 LKEIIEDLQDQIQKNQDKVQALINEL 133 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 466
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=55.26 E-value=3.6e+02 Score=30.61 Aligned_cols=8 Identities=0% Similarity=-0.155 Sum_probs=4.4
Q ss_pred cccCCCCC
Q 002131 685 GISMLNES 692 (961)
Q Consensus 685 ~lS~~d~n 692 (961)
-.+|+|=-
T Consensus 211 I~AP~dG~ 218 (346)
T PRK10476 211 VRAPFDGR 218 (346)
T ss_pred EECCCCcE
Confidence 45566554
No 467
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=55.23 E-value=2.9e+02 Score=29.49 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 477 EEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLY 556 (961)
Q Consensus 477 Ekk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld 556 (961)
+...|...+..|.++..+++......+..|.++...++ .+++++++..|.+++..-.+++...++-..
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt------------~eemQe~i~~L~kev~~~~erl~~~k~g~~ 147 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT------------TEEMQEEIQELKKEVAGYRERLKNIKAGTN 147 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555555666666666666666666655555554422 234444555555555444444444444443
Q ss_pred HH
Q 002131 557 CI 558 (961)
Q Consensus 557 ~i 558 (961)
.+
T Consensus 148 ~v 149 (201)
T KOG4603|consen 148 HV 149 (201)
T ss_pred cC
Confidence 33
No 468
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=55.18 E-value=17 Score=45.77 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 628 EMSLRREIESYRVEVDSLRHENISLL 653 (961)
Q Consensus 628 eE~LReELEsle~EIEsLReEl~~L~ 653 (961)
..+++++|++++.+++.++.++..+.
T Consensus 231 ~~~l~~~i~~l~~~~~~~~~~l~~~~ 256 (759)
T PF01496_consen 231 IKELEEEIEELEKELEELEEELKKLL 256 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 469
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=54.99 E-value=63 Score=29.86 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=44.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHhhhhchhHHhhh
Q 002131 881 MKGVLPKVSEERDMMWEEVKQYSEKNMLLN-----SEVNVLKKKIEVLDEDLLLKEGQITILKD 939 (961)
Q Consensus 881 ~~g~L~~v~eerd~~~ee~k~lke~~~~~k-----~Ev~~lkk~ie~Leedi~~kEgqIsil~D 939 (961)
+-.+|..+.+|+..|.-+...+..++..+. ..-..|...++.|-..+..+..||..|.|
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~d 78 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLYD 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677777777777777777755555544 35567888899999999999999999976
No 470
>PRK04325 hypothetical protein; Provisional
Probab=54.99 E-value=70 Score=29.17 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002131 608 DKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNG 660 (961)
Q Consensus 608 ee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ 660 (961)
...+.+|.++++.+.-...-.+.|-.-|..-..+|..|+.++..+..+|.+.+
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666666666666667777777777777777777777776655
No 471
>PRK04325 hypothetical protein; Provisional
Probab=54.84 E-value=80 Score=28.79 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 503 NEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKF 548 (961)
Q Consensus 503 eeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~ 548 (961)
+.+|.+++.++.+.+.-|+.+...+-....+|..+...+.-+.+++
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443333
No 472
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=54.62 E-value=1.3e+02 Score=34.90 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 545 GEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 545 ~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
.++.++.+++..++++....-.++..++.+-...+-..|..+.+++..+...+
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sL 55 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSL 55 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555554
No 473
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.59 E-value=3.2e+02 Score=29.86 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHhhhcchhhhhhHHHHHHHHHHH
Q 002131 545 GEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF---SDQIEKKPALDKYDKHVALLQREQ 621 (961)
Q Consensus 545 ~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL---~eEleke~~vee~ek~Ie~lq~El 621 (961)
+--+.--.-+.+.+-....+..+.|.+++++|+.|..++-..+.. ..-+++. .+-+.--|+-.+-.+.+..+..++
T Consensus 81 qrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi~-r~nrqe~~~l~kvis~~p~RsEt~k~l~el~kel 159 (222)
T KOG3215|consen 81 QRVIEMNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKIV-RLNRQEYSALSKVISDCPARSETDKDLNELKKEL 159 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 333444444455555666666677777777777777777665542 1122222 122222234445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002131 622 MRLTGVEMSLRREIESYRVE 641 (961)
Q Consensus 622 erLt~~eE~LReELEsle~E 641 (961)
++|......+-..|+-.+.+
T Consensus 160 eel~~~~~s~~~klelrRkq 179 (222)
T KOG3215|consen 160 EELDDLNNSTETKLELRRKQ 179 (222)
T ss_pred HHHHHHhhhhHHHHHHHhhc
Confidence 55555544444444443333
No 474
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=54.40 E-value=3.3e+02 Score=31.78 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 557 CIKRNFEEKEMECKDLQKSITRLLRTC 583 (961)
Q Consensus 557 ~iR~e~eEleeei~eleKeIa~Lq~~I 583 (961)
.|..=+++++.+|..+++.|+.++..-
T Consensus 184 KF~~vLNeKK~KIR~lq~~L~~~~~~~ 210 (342)
T PF06632_consen 184 KFVLVLNEKKAKIRELQRLLASAKEEE 210 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhccc
Confidence 455556666666777766666666543
No 475
>PRK04406 hypothetical protein; Provisional
Probab=54.10 E-value=80 Score=28.97 Aligned_cols=50 Identities=6% Similarity=0.104 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002131 611 DKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNG 660 (961)
Q Consensus 611 ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ 660 (961)
+.+|.++.+.+.-...-.+.|-+.|..-..+|+.|+.++..+..+|.+.+
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444444444455555555555555555555555555555544
No 476
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=53.85 E-value=2.2e+02 Score=36.34 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 541 LSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 541 leEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
-.-+.++....++.+.+.+.+..+++.+...++..|+.+... +.++.|..+.+++
T Consensus 536 ~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e~~~~i~E~~--~~~~~i~~l~~el 590 (809)
T KOG0247|consen 536 SQMLSSQLNDKKEQIEQLRDEIERLKKENLTTEYSIEILEST--EYEEEIEALDQEL 590 (809)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcc--hhhhhhHHHHHHH
Confidence 355666667777777777777888888888888888877777 5555566666665
No 477
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.70 E-value=55 Score=28.59 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 484 RVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEEN 534 (961)
Q Consensus 484 RlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeEL 534 (961)
|+.+|+.+.-++...|+..+..+.++.+.++.+++.+..+-.-+|.+.+.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQI 51 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
No 478
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=53.56 E-value=1.9e+02 Score=26.99 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 002131 491 QNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAA--EADLYCIKRNFEEKEME 568 (961)
Q Consensus 491 knvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qea--eEeld~iR~e~eEleee 568 (961)
+...|..-+..+..+...+...+..++..+..++...+.++..+...-..+-..-++.... ..-=...+.....+...
T Consensus 1 ~k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q 80 (127)
T smart00502 1 QREALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQ 80 (127)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002131 569 CKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 569 i~eleKeIa~Lq~~Ik~lEK 588 (961)
...++..+..+...|...+.
T Consensus 81 ~~~l~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 81 LESLTQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 479
>PRK00846 hypothetical protein; Provisional
Probab=53.26 E-value=74 Score=29.53 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002131 608 DKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNG 660 (961)
Q Consensus 608 ee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ 660 (961)
..++.+|..+.+.+.-...-.+.|-..|......|+.|+.++..+..+|++.+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 480
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.47 E-value=3.7e+02 Score=29.93 Aligned_cols=169 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 002131 459 ELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVST-------FNEREAESRSMIT----HSEQQLKDLTRRA 527 (961)
Q Consensus 459 EL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~-------leeKi~El~~kIe----~leeqIe~ltsel 527 (961)
++..+-..+...|...+--.+++..|..++.+....+..=... +..-+..+...++ .+..++..+...+
T Consensus 58 Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f 137 (243)
T cd07666 58 EMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQL 137 (243)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHhhhc
Q 002131 528 EQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT----IAGLRDGFSDQIEK 603 (961)
Q Consensus 528 EeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt----Ie~LrqEL~eElek 603 (961)
...-.+...+-.++.-.-.+...++.+++..+.....+..+...+..+|..++..+....+. +++.++.-...+..
T Consensus 138 ~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~D~k~ 217 (243)
T cd07666 138 LPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALKADWERWKQNMQTDLRS 217 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHH
Q 002131 604 KPALDKYDKHVALLQREQMRLTGVE 628 (961)
Q Consensus 604 e~~vee~ek~Ie~lq~ElerLt~~e 628 (961)
- -+...+..|.-.++-+.-+....
T Consensus 218 ~-~~~yae~~i~~~~~~~~~We~fl 241 (243)
T cd07666 218 A-FTDMAENNISYYEECLATWESFL 241 (243)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHh
No 481
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=52.38 E-value=2.8e+02 Score=30.95 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 479 QRLRERVRELAEQNVSLQREVST---FNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADL 555 (961)
Q Consensus 479 k~LrERlreLeEknvsLqrEIe~---leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEel 555 (961)
+++++|+..|--...-..+.+-+ .+.-..--+.++++++.+|..++.+-+.+..+.+.+...-..+..+..+....|
T Consensus 55 ~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~l 134 (292)
T KOG4005|consen 55 KRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSEL 134 (292)
T ss_pred HHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 556 YCIKRNFEEKEMECKDLQKSITR 578 (961)
Q Consensus 556 d~iR~e~eEleeei~eleKeIa~ 578 (961)
..++.++-++++.+.--.-.|+.
T Consensus 135 e~~~~~l~~~~~~~~~~~~v~ee 157 (292)
T KOG4005|consen 135 ELLRQELAELKQQQQHNTRVIEE 157 (292)
T ss_pred HHHHHHHHhhHHHHHHhhHHHhh
No 482
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.30 E-value=5.6e+02 Score=31.91 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 438 LESRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSE 517 (961)
Q Consensus 438 Le~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~le 517 (961)
|..-+..+.+|.-+...-.-.+++++=+.+.-++++--.++..++++...+.+.-..|..+++....+-+.+..+...+.
T Consensus 564 L~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~ 643 (741)
T KOG4460|consen 564 LSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLL 643 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 518 QQ----LKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGL 593 (961)
Q Consensus 518 eq----Ie~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~L 593 (961)
+. +.-+....-..+.|+.-+-..++-+....+.++...+..+.-.........+-.-.+. ..+..-.+.+.++|
T Consensus 644 ~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~--~~Q~~~iqsiL~~L 721 (741)
T KOG4460|consen 644 HSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILS--AYQRKCIQSILKEL 721 (741)
T ss_pred hcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc--HHHHHHHHHHHHHH
Q ss_pred hhhhhHhhhcchhhhhhHHHH
Q 002131 594 RDGFSDQIEKKPALDKYDKHV 614 (961)
Q Consensus 594 rqEL~eEleke~~vee~ek~I 614 (961)
-..+ .++-++ +..+++.+
T Consensus 722 ~~~i-~~~~k~--VK~i~~~v 739 (741)
T KOG4460|consen 722 GEHI-REMVKQ--VKDIRNHV 739 (741)
T ss_pred HHHH-HHHHHH--HHHHHHhh
No 483
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=51.80 E-value=1.2e+02 Score=29.40 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHH--------------------
Q 002131 555 LYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHV-------------------- 614 (961)
Q Consensus 555 ld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~I-------------------- 614 (961)
++.+...+..+++++..+...|..+...+.+++..+..+ ..+... .+. +-.+
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L-~~l~~~-~~~------~~lv~lg~~~~v~~~v~~~~~v~v 72 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETL-EDLKGA-EGK------ETLVPVGAGSFVKAKVKDTDKVLV 72 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-CCC------eEEEEcCCCeEEEEEeCCCCEEEE
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 615 ---------ALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKG 658 (961)
Q Consensus 615 ---------e~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~ 658 (961)
.....-..-|......+...+..++..+..++.++..+...|+.
T Consensus 73 ~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 73 SIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 484
>PHA02607 wac fibritin; Provisional
Probab=51.22 E-value=5.3e+02 Score=31.33 Aligned_cols=170 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 473 KYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAE 552 (961)
Q Consensus 473 ~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeae 552 (961)
..|.....|.+.+..+..+...+...+...+.-+...-+- .+=+++..-..+++.++....+....+.-....++...
T Consensus 49 ~VQ~NV~~ld~n~~~~~~kine~vd~vn~I~~~L~~~gD~--~~i~qv~~n~~dI~~lk~~~~~~~~~l~~~~~~~~~~~ 126 (454)
T PHA02607 49 NVQKNVEQLDENTKKTKDKINEVVDDVNTIQENLDVIGDI--SVIDQINQNVADIEVLKKDVSDTTDKLAGTTNEVDEIE 126 (454)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCcH--HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q ss_pred HHHHH-----------HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhc
Q 002131 553 ADLYC-----------IKRNFEEKEMEC------------------KDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEK 603 (961)
Q Consensus 553 Eeld~-----------iR~e~eEleeei------------------~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eElek 603 (961)
+++.. ++..+.=++.++ .-+.-+|...-..+..+..+|..|+..+ .+.
T Consensus 127 ~~iG~~~p~~d~~~rTVr~di~~IK~elG~y~g~diNG~p~p~s~gtGmK~ri~~n~~~~~~~~~Ri~~LE~~~---~~s 203 (454)
T PHA02607 127 ADIGVFNPEADPVTRTIRNDILWIKTELGAYPGFDINGNPDPGSTGTGMKYRIIDNTTALVDHGQRITELENDW---ADS 203 (454)
T ss_pred HhcCCcCcccCCCccchhhhHHHHHHHhccCCCCCCCCCcCCCCCCCceeeehhhhHHHHHhhhhHHHHHHhhh---hhc
Q ss_pred chhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 604 KPALDKYDKHVALLQREQ--------MRLTGVEMSLRREIESYRVEVDSLRHEN 649 (961)
Q Consensus 604 e~~vee~ek~Ie~lq~El--------erLt~~eE~LReELEsle~EIEsLReEl 649 (961)
+ +..+-..+..|++|+ ...+.+...+...+..+..+|.++++++
T Consensus 204 d--Vg~Lt~~v~~lR~ElG~~~~at~~~iY~RL~~lE~~~~~~~~eI~~Ik~~I 255 (454)
T PHA02607 204 D--VGQLTREVNDLRAELGPSSLATGEPIYTRLNTLEDAITGINSDIDEIKTAI 255 (454)
T ss_pred C--chHHHHHHHHHHHHhCCCCcccCccHHHHHHHHhhhhhhhhhHHHHHHHHh
No 485
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.16 E-value=76 Score=31.01 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002131 870 DLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDE 925 (961)
Q Consensus 870 dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Lee 925 (961)
|.++.-..|+.++..|..+..++..|...+..+-+.+..++.|...|...+..+..
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 486
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.90 E-value=6e+02 Score=31.87 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 439 ESRTRRLEREKVELQSGL-EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSE 517 (961)
Q Consensus 439 e~QLepLEkQaekAK~yL-EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~le 517 (961)
.++|..+.++..+.+... +.+....+. +..++.+....=.+|+.|++-+..+-++--.--..+..+|..+...+..-+
T Consensus 436 ~~Ei~~~QA~M~E~~Dt~~~~dV~~~~s-L~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~ 514 (852)
T KOG4787|consen 436 TTELRKEQAQMNELKDTVFKSDVQKVIS-LATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDELKIKILELEKRLSE 514 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 002131 518 QQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAA-EADLYCIKRNFEEKEMECKDLQKS-----ITRLLRTCSEQEKTIA 591 (961)
Q Consensus 518 eqIe~ltselEeleeELeeleqeleEl~ee~qea-eEeld~iR~e~eEleeei~eleKe-----Ia~Lq~~Ik~lEKtIe 591 (961)
.--..+..+++.+......++.....+......- +-...-++............+.++ ++.++...+..+.+..
T Consensus 515 ~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~~~t~~l~Kq~L~~~~~q~de~r~s~~~Q~~~~~~~~L~~~~~~~~~E~q 594 (852)
T KOG4787|consen 515 KLAIDLVSELEGKIPTIDEIEQCCEVLAAVETQTGRLCKQFLKIDHAQKDERRRSLSKQSGAAIIAELANVMQEMKNEHQ 594 (852)
T ss_pred HHHHHHHHHHHhhcCcHhHHHHHHHHHHHHhhhHHHHHHHHHHhcccCcchHHHHHHhccchhhhhhhhhhHHHHHhhhh
Q ss_pred HHhhh
Q 002131 592 GLRDG 596 (961)
Q Consensus 592 ~LrqE 596 (961)
.++.+
T Consensus 595 ~l~~~ 599 (852)
T KOG4787|consen 595 KLDKI 599 (852)
T ss_pred hhccc
No 487
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=50.82 E-value=1.1e+02 Score=30.97 Aligned_cols=92 Identities=24% Similarity=0.277 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 466 DWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELG 545 (961)
Q Consensus 466 E~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ 545 (961)
++..++..-+.+....+.++..+.++...|++--.....++.++..+-..+...+-++-..++.+...=..+..+-+++.
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~ 113 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELR 113 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 002131 546 EKFRAAEADLYC 557 (961)
Q Consensus 546 ee~qeaeEeld~ 557 (961)
.+++.+..++..
T Consensus 114 ~~le~l~~~l~~ 125 (141)
T PF13874_consen 114 KRLEALEAQLNA 125 (141)
T ss_dssp ------------
T ss_pred HHHHHHHHHHcC
No 488
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=50.76 E-value=2.9e+02 Score=28.18 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Q 002131 520 LKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT--------IA 591 (961)
Q Consensus 520 Ie~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt--------Ie 591 (961)
++.+......++..+......++.+++++...+..+..-...+.+++.++..+..++........-.=+. ..
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~ 101 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPE 101 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccccccccccc
Q ss_pred HHhhhh-------------hHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 592 GLRDGF-------------SDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYR 639 (961)
Q Consensus 592 ~LrqEL-------------~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle 639 (961)
...... ..++..- +..+.++++.++.-...+.+....|.+-...+.
T Consensus 102 ~~~~~~~~~~~~~~~~~l~d~el~~l--~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~Ld 160 (160)
T PF13094_consen 102 LPQKSLLEASESRFAPTLCDEELLPL--LKQLNKHLESMQNNLQQLKGLLEAIERSYAALD 160 (160)
T ss_pred ccccccccccccccCcccchHHHHHH--HHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcC
No 489
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.69 E-value=3.7e+02 Score=29.42 Aligned_cols=159 Identities=10% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 500 STFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRL 579 (961)
Q Consensus 500 e~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~L 579 (961)
......++.+...+......+++....+-+...--.++..++....--.-..+--.+..+.+.....+...+++..|...
T Consensus 29 ~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a 108 (222)
T KOG3215|consen 29 DGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLKTQRVIEMNLREIENLVQKKLEIERSIQKA 108 (222)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhh-hhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 580 LRTCSEQEKTIAGLRD-GFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKG 658 (961)
Q Consensus 580 q~~Ik~lEKtIe~Lrq-EL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~ 658 (961)
++.|..+.++|..... ++ ..+.+..+.+-+...=..-+.. ..|..+..+++++.+.++..-.+|-.
T Consensus 109 ~~kie~lkkql~eaKi~r~-----nrqe~~~l~kvis~~p~RsEt~--------k~l~el~keleel~~~~~s~~~klel 175 (222)
T KOG3215|consen 109 RNKIELLKKQLHEAKIVRL-----NRQEYSALSKVISDCPARSETD--------KDLNELKKELEELDDLNNSTETKLEL 175 (222)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhcCCCcchhH--------HHHHHHHHHHHHHHHHhhhhHHHHHH
Q ss_pred cCCchhhhHhhhh
Q 002131 659 NGKESAALTMKLD 671 (961)
Q Consensus 659 ~~ne~~~~~~kl~ 671 (961)
-.+.+-..++-++
T Consensus 176 rRkqf~~lm~~~~ 188 (222)
T KOG3215|consen 176 RRKQFKYLMVSTE 188 (222)
T ss_pred HhhcchHHHhhHH
No 490
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=50.62 E-value=2e+02 Score=33.46 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=0.0
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhh-hHHHHHHH
Q 002131 792 SELKAETLLTSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKDE-SINQLQID 870 (961)
Q Consensus 792 ~klkses~~~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D-~I~~lq~d 870 (961)
+.|.....-...|++.|.---..+.+++.+...+.+.++.++.+...+..+|..+......+|.+|..+-= .||.++.-
T Consensus 116 v~L~~~~~p~e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~K 195 (342)
T PF06632_consen 116 VKLKQVDNPAEVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAK 195 (342)
T ss_dssp EE-EE-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHH
Q 002131 871 LQDSAKELKIMKGVLPKVSEERDM 894 (961)
Q Consensus 871 lqe~~keis~~~g~L~~v~eerd~ 894 (961)
|.++...|+..+..-..+..+...
T Consensus 196 IR~lq~~L~~~~~~~~~~~~~~~~ 219 (342)
T PF06632_consen 196 IRELQRLLASAKEEEKSPKQERED 219 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhhccccchhhhhcc
No 491
>PRK02793 phi X174 lysis protein; Provisional
Probab=50.59 E-value=93 Score=28.23 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002131 608 DKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKE 662 (961)
Q Consensus 608 ee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne 662 (961)
...+.+|.++.+.+.-...-.+.|-+-|.....+|..|..++..+..+|.+.+..
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 492
>PRK00295 hypothetical protein; Provisional
Probab=50.56 E-value=81 Score=28.31 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhh
Q 002131 610 YDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAA 665 (961)
Q Consensus 610 ~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~ 665 (961)
++.+|.++++.+.-...-.+.|-..|..-..+|..|+.++..+..+|.+.+.....
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~~~~ 58 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMVGQFGS 58 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
No 493
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=50.55 E-value=1.4e+02 Score=28.90 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 567 MECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLR 646 (961)
Q Consensus 567 eei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLR 646 (961)
...+....++..+...+..++.++..+++++ +.+-.. ..+..++.++.++.+....|..+|..+....+-|-
T Consensus 28 ~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l-~~LPt~-------~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 28 RRTYAKREDIEKLEERLDEHDRRLQALETKL-EHLPTR-------DDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 002131 647 HE 648 (961)
Q Consensus 647 eE 648 (961)
+.
T Consensus 100 E~ 101 (106)
T PF10805_consen 100 EN 101 (106)
T ss_pred HH
No 494
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=50.48 E-value=3.6e+02 Score=29.18 Aligned_cols=173 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 509 SRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 509 l~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEK 588 (961)
++.++.+.+.-......-++.++..|..+...++-+...+..+-..+..|=.-+..+-. .+.+..++..-..+.....
T Consensus 3 ~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~--~E~~~~Ls~al~~la~~~~ 80 (224)
T cd07623 3 ITIKMDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSN--CEEHTSLSRALSQLAEVEE 80 (224)
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccchhHHHHHHHHHHHHH
Q ss_pred HHHHHhhh------------hhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 002131 589 TIAGLRDG------------FSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVE-----VDSLRHENIS 651 (961)
Q Consensus 589 tIe~LrqE------------L~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~E-----IEsLReEl~~ 651 (961)
.|..+..+ |..=++--.++..+-..-...-.....+.......+..++.++.. +..+..++..
T Consensus 81 ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~ 160 (224)
T cd07623 81 KIEQLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKE 160 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q ss_pred HHHHhhhcCCchhhhHhhhhHHH----HHHHHHHHh
Q 002131 652 LLNRLKGNGKESAALTMKLDKEL----WTRICCLQN 683 (961)
Q Consensus 652 L~rRLq~~~ne~~~~~~kl~~El----~~~I~~lq~ 683 (961)
...+.+....+...++.....|| ..+|.++++
T Consensus 161 ~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~ 196 (224)
T cd07623 161 WEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKD 196 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.38 E-value=1.6e+02 Score=25.86 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 509 SRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFE 563 (961)
Q Consensus 509 l~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~e 563 (961)
...+|++|..++..|..++..+..++..+...+...+++-.-+.+-+|.+-.-|.
T Consensus 1 s~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~ 55 (56)
T PF04728_consen 1 SNAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSYK 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcc
No 496
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=50.22 E-value=85 Score=39.02 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 481 LRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQ-------QLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEA 553 (961)
Q Consensus 481 LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~lee-------qIe~ltselEeleeELeeleqeleEl~ee~qeaeE 553 (961)
+..+.+.+.++...+..+|+.++.++.++...+..-+- .+..+..+++.++.+++.+...|.++.+++.++..
T Consensus 554 ~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~~ 633 (638)
T PRK10636 554 LRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQMLL 633 (638)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred H
Q 002131 554 D 554 (961)
Q Consensus 554 e 554 (961)
+
T Consensus 634 ~ 634 (638)
T PRK10636 634 E 634 (638)
T ss_pred h
No 497
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=50.16 E-value=4.3e+02 Score=30.00 Aligned_cols=124 Identities=9% Similarity=0.026 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 002131 466 DWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQY---TEENGDLRQNLS 542 (961)
Q Consensus 466 E~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEel---eeELeeleqele 542 (961)
++...+...+.+....+..+..+.......+.++...+.++..+...++..+...++++.-++.- +.++++.+..+.
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~ 162 (346)
T PRK10476 83 PYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQR 162 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 543 ELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 543 El~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
..+..++.++..+.........+.....++..--+.+......++.+
T Consensus 163 ~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~~~ 209 (346)
T PRK10476 163 DAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHLEDT 209 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcC
No 498
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=50.15 E-value=1.4e+02 Score=36.91 Aligned_cols=93 Identities=12% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 451 ELQSGLEKELDRRSSDWSFKLEKY--QMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAE 528 (961)
Q Consensus 451 kAK~yLEKEL~rrqnE~~~kI~~~--EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselE 528 (961)
++-..+++.+..+...|..++..+ ..+.+.+.+|+..|...+.+--.+|....+.+..+...++...+++..+..+++
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 002131 529 QYTEENGDLRQNLSE 543 (961)
Q Consensus 529 eleeELeeleqeleE 543 (961)
...+.+...-.++..
T Consensus 244 ~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 244 NDKKQLKADLAELKK 258 (555)
T ss_pred HhHHHHHHHHHHHHh
No 499
>PRK00846 hypothetical protein; Provisional
Probab=50.06 E-value=1.2e+02 Score=28.19 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 492 NVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAE 552 (961)
Q Consensus 492 nvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeae 552 (961)
+..+.-.=..++.+|.+++.++.+.+.-|+.+...+-.....++.+...+.-+.+++..++
T Consensus 1 ~~~~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 1 HEQLSLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred CchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 500
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=49.90 E-value=5.4e+02 Score=31.01 Aligned_cols=154 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 478 EQRLRERVRELAEQNVSLQREVSTFNEREAESR--SMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADL 555 (961)
Q Consensus 478 kk~LrERlreLeEknvsLqrEIe~leeKi~El~--~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEel 555 (961)
.+....-.....+-...+...+..+.+--..+. .....++.-...+..+.+.+-..+++|+..+++++.- .+.--.
T Consensus 164 RQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkD--V~~Rgv 241 (424)
T PF03915_consen 164 RQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKD--VVQRGV 241 (424)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 556 YCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT-IAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRR 633 (961)
Q Consensus 556 d~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt-Ie~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LRe 633 (961)
.=....++.+..++..+.++|..+...+...+-. ..-++.||+......+.+..-+.-+..++..+..+.+.-..+..
T Consensus 242 Rp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq 320 (424)
T PF03915_consen 242 RPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQ 320 (424)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!