Query 002131
Match_columns 961
No_of_seqs 181 out of 194
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:38:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.2 2.8E-07 9.5E-12 93.7 38.2 183 465-657 72-254 (284)
2 1c1g_A Tropomyosin; contractIl 99.2 1.5E-07 5.2E-12 95.6 34.9 104 553-659 146-249 (284)
3 1i84_S Smooth muscle myosin he 98.9 2.6E-09 8.7E-14 134.8 10.1 118 426-544 868-988 (1184)
4 1i84_S Smooth muscle myosin he 98.7 3.9E-08 1.3E-12 124.1 11.4 12 239-250 589-600 (1184)
5 3na7_A HP0958; flagellar bioge 97.9 0.00084 2.9E-08 71.4 21.1 42 632-673 117-158 (256)
6 2efr_A General control protein 97.8 0.0082 2.8E-07 59.8 24.1 125 456-580 26-153 (155)
7 3na7_A HP0958; flagellar bioge 97.7 0.0052 1.8E-07 65.3 23.5 13 635-647 152-164 (256)
8 3vkg_A Dynein heavy chain, cyt 97.6 0.062 2.1E-06 74.0 36.2 113 790-909 2299-2411(3245)
9 2v71_A Nuclear distribution pr 97.6 0.009 3.1E-07 61.3 21.5 27 628-654 156-182 (189)
10 2v71_A Nuclear distribution pr 97.5 0.014 4.7E-07 59.9 21.5 65 569-636 90-154 (189)
11 2efr_A General control protein 97.4 0.075 2.6E-06 53.0 24.8 151 442-593 2-152 (155)
12 2dfs_A Myosin-5A; myosin-V, in 97.2 0.049 1.7E-06 68.7 26.7 8 411-418 816-823 (1080)
13 3vkg_A Dynein heavy chain, cyt 97.1 0.098 3.4E-06 72.1 29.3 102 801-918 2305-2406(3245)
14 3o0z_A RHO-associated protein 97.0 0.089 3E-06 53.0 20.9 26 621-646 113-138 (168)
15 3oja_B Anopheles plasmodium-re 96.8 0.0086 2.9E-07 69.5 13.8 32 628-659 553-584 (597)
16 2ocy_A RAB guanine nucleotide 96.7 0.17 5.9E-06 50.4 19.9 150 501-663 3-152 (154)
17 2dfs_A Myosin-5A; myosin-V, in 96.6 0.046 1.6E-06 68.9 18.8 30 617-646 1021-1050(1080)
18 3oja_B Anopheles plasmodium-re 96.5 0.015 5.2E-07 67.5 13.4 18 385-402 352-369 (597)
19 3o0z_A RHO-associated protein 96.4 0.63 2.1E-05 46.9 21.7 97 440-536 6-108 (168)
20 2fxo_A Myosin heavy chain, car 95.6 1.3 4.5E-05 42.5 19.6 34 559-592 89-122 (129)
21 3ol1_A Vimentin; structural ge 94.9 1.1 3.8E-05 42.6 16.5 92 473-564 17-108 (119)
22 3u1c_A Tropomyosin alpha-1 cha 94.9 1.2 4E-05 41.3 16.1 27 559-585 71-97 (101)
23 3u59_A Tropomyosin beta chain; 94.6 1.2 4.2E-05 41.0 15.6 79 508-586 20-98 (101)
24 4gkw_A Spindle assembly abnorm 93.9 4.9 0.00017 39.0 23.2 58 524-581 31-88 (167)
25 2ocy_A RAB guanine nucleotide 93.6 6.3 0.00022 39.3 19.3 35 533-567 59-93 (154)
26 4gkw_A Spindle assembly abnorm 93.6 5.6 0.00019 38.6 21.0 114 484-597 12-128 (167)
27 2b9c_A Striated-muscle alpha t 93.3 1.2 4.2E-05 43.9 13.6 107 484-597 4-110 (147)
28 3l4q_C Phosphatidylinositol 3- 93.2 2.5 8.6E-05 42.7 15.7 141 524-669 9-153 (170)
29 2b9c_A Striated-muscle alpha t 93.1 0.59 2E-05 46.2 11.0 117 472-588 6-122 (147)
30 3ol1_A Vimentin; structural ge 93.1 3.4 0.00012 39.2 15.9 39 512-550 21-59 (119)
31 3tnu_B Keratin, type II cytosk 93.0 2.2 7.5E-05 40.9 14.7 49 533-581 76-124 (129)
32 3tnu_A Keratin, type I cytoske 92.4 2.2 7.6E-05 41.0 13.8 50 533-582 78-127 (131)
33 1x79_B RAB GTPase binding effe 92.3 1.3 4.5E-05 41.9 11.7 95 538-648 12-106 (112)
34 3oja_A Leucine-rich immune mol 92.2 1.7 5.8E-05 49.4 14.8 28 607-634 458-485 (487)
35 3q8t_A Beclin-1; autophagy, AT 91.9 5.5 0.00019 36.6 15.1 31 555-585 62-92 (96)
36 2xzr_A Immunoglobulin-binding 91.7 8 0.00027 35.7 17.2 103 482-584 5-107 (114)
37 3s4r_A Vimentin; alpha-helix, 91.4 3.4 0.00012 37.8 13.0 32 474-505 14-45 (93)
38 3tnu_B Keratin, type II cytosk 91.4 2 7E-05 41.1 12.2 26 614-639 98-123 (129)
39 2eqb_B RAB guanine nucleotide 91.4 2.6 9E-05 39.0 12.2 86 549-636 8-93 (97)
40 3ghg_A Fibrinogen alpha chain; 91.3 2 6.8E-05 49.9 13.8 53 533-592 103-156 (562)
41 3hnw_A Uncharacterized protein 90.6 2 6.8E-05 42.0 11.3 10 480-489 36-45 (138)
42 3tnu_A Keratin, type I cytoske 90.5 1.7 5.9E-05 41.7 10.8 27 614-640 100-126 (131)
43 2eqb_B RAB guanine nucleotide 90.1 6.9 0.00024 36.2 13.8 16 548-563 64-79 (97)
44 3hnw_A Uncharacterized protein 90.0 2.9 9.9E-05 40.8 12.0 40 558-597 94-133 (138)
45 2v4h_A NF-kappa-B essential mo 89.8 5.1 0.00018 37.8 12.8 33 557-589 73-105 (110)
46 2jee_A YIIU; FTSZ, septum, coi 89.7 3 0.0001 37.5 10.7 57 466-522 10-66 (81)
47 3q8t_A Beclin-1; autophagy, AT 89.0 14 0.00046 34.0 15.3 71 479-549 7-77 (96)
48 2jee_A YIIU; FTSZ, septum, coi 88.7 6.4 0.00022 35.4 12.0 23 500-522 9-31 (81)
49 3ghg_A Fibrinogen alpha chain; 88.7 3.3 0.00011 48.1 12.9 41 887-927 114-154 (562)
50 2v66_B Nuclear distribution pr 88.6 17 0.00057 34.4 16.0 54 495-548 40-93 (111)
51 3swk_A Vimentin; cytoskeleton, 88.6 5.8 0.0002 35.7 12.0 37 514-550 3-39 (86)
52 1deq_A Fibrinogen (alpha chain 88.4 13 0.00044 41.8 16.9 37 479-515 95-131 (390)
53 1ic2_A Tropomyosin alpha chain 88.4 3.5 0.00012 36.5 10.3 49 470-518 7-55 (81)
54 1l8d_A DNA double-strand break 87.9 6.8 0.00023 36.0 12.5 38 613-650 65-102 (112)
55 3swk_A Vimentin; cytoskeleton, 87.7 3.4 0.00012 37.2 9.9 79 480-558 4-82 (86)
56 3cvf_A Homer-3, homer protein 87.7 3.2 0.00011 37.1 9.5 66 476-541 6-71 (79)
57 2v66_B Nuclear distribution pr 86.7 22 0.00074 33.7 17.0 81 483-563 3-87 (111)
58 3cve_A Homer protein homolog 1 86.7 6.9 0.00023 34.4 10.8 62 480-541 4-65 (72)
59 1deq_A Fibrinogen (alpha chain 86.4 12 0.00041 42.0 15.2 23 568-590 135-157 (390)
60 2v4h_A NF-kappa-B essential mo 85.8 9.9 0.00034 35.9 12.1 29 480-508 28-56 (110)
61 2e7s_A RAB guanine nucleotide 85.0 1.7 5.9E-05 42.4 6.9 73 525-597 39-112 (135)
62 1x79_B RAB GTPase binding effe 84.7 19 0.00066 34.1 13.6 28 524-551 44-71 (112)
63 2e7s_A RAB guanine nucleotide 83.8 5.2 0.00018 39.1 9.6 87 856-942 40-127 (135)
64 1m1j_B Fibrinogen beta chain; 82.7 36 0.0012 39.3 17.6 61 530-590 98-158 (464)
65 3mq7_A Bone marrow stromal ant 82.4 21 0.00072 34.0 12.7 13 549-561 88-100 (121)
66 3hhm_B NISH2 P85alpha; PI3KCA, 82.3 23 0.00078 39.7 15.6 120 532-656 126-249 (373)
67 2no2_A HIP-I, huntingtin-inter 82.1 25 0.00086 32.9 13.3 34 564-597 5-38 (107)
68 3cvf_A Homer-3, homer protein 81.9 13 0.00043 33.3 10.5 69 497-565 6-74 (79)
69 3cve_A Homer protein homolog 1 81.5 15 0.0005 32.4 10.7 64 501-564 4-67 (72)
70 2i1j_A Moesin; FERM, coiled-co 81.1 2.6 8.9E-05 49.8 7.8 13 672-684 514-526 (575)
71 3jsv_C NF-kappa-B essential mo 81.1 10 0.00036 34.8 10.0 24 560-583 54-77 (94)
72 2i1j_A Moesin; FERM, coiled-co 80.9 2.1 7.3E-05 50.5 7.0 84 507-597 331-414 (575)
73 3mq9_A Bone marrow stromal ant 80.7 30 0.001 38.9 16.1 15 567-581 411-425 (471)
74 3mq7_A Bone marrow stromal ant 80.2 38 0.0013 32.3 13.7 42 619-660 71-112 (121)
75 3i00_A HIP-I, huntingtin-inter 79.6 14 0.00048 35.3 10.8 62 471-535 17-78 (120)
76 1m1j_A Fibrinogen alpha subuni 78.8 54 0.0019 37.7 16.9 33 559-591 124-156 (491)
77 2zqm_A Prefoldin beta subunit 78.6 26 0.0009 32.0 12.3 35 559-593 12-46 (117)
78 3mq9_A Bone marrow stromal ant 76.9 53 0.0018 36.9 16.6 13 381-393 304-316 (471)
79 3s4r_A Vimentin; alpha-helix, 76.8 44 0.0015 30.4 13.3 31 500-530 12-42 (93)
80 1d7m_A Cortexillin I; coiled-c 75.9 47 0.0016 30.3 16.2 89 499-587 6-94 (101)
81 4h22_A Leucine-rich repeat fli 75.8 21 0.00073 33.3 10.5 32 559-590 50-81 (103)
82 2xzr_A Immunoglobulin-binding 74.7 53 0.0018 30.3 17.1 100 495-594 4-103 (114)
83 1cii_A Colicin IA; bacteriocin 74.6 97 0.0033 35.8 17.3 87 518-604 356-448 (602)
84 3jsv_C NF-kappa-B essential mo 74.3 20 0.00067 33.1 9.7 21 484-504 10-30 (94)
85 3l4q_C Phosphatidylinositol 3- 73.5 81 0.0028 31.9 17.8 120 478-597 12-154 (170)
86 2xnx_M M protein, M1-BC1; cell 73.4 13 0.00045 36.6 8.9 86 445-530 8-106 (146)
87 2lw1_A ABC transporter ATP-bin 72.5 17 0.00059 32.5 8.9 57 495-551 20-82 (89)
88 1fxk_A Prefoldin; archaeal pro 71.0 39 0.0013 30.5 11.2 35 559-593 7-41 (107)
89 1m1j_C Fibrinogen gamma chain; 70.8 48 0.0016 37.7 14.1 44 610-653 82-125 (409)
90 4h22_A Leucine-rich repeat fli 69.8 32 0.0011 32.2 10.1 65 870-934 24-88 (103)
91 1wt6_A Myotonin-protein kinase 69.7 31 0.0011 31.0 9.6 56 452-508 15-70 (81)
92 1f5n_A Interferon-induced guan 68.7 1.9E+02 0.0066 34.2 20.5 53 536-588 435-494 (592)
93 2zqm_A Prefoldin beta subunit 68.0 72 0.0025 29.0 13.9 31 559-589 76-106 (117)
94 3iyk_A VP5; icosahedral virus; 67.4 1.9E+02 0.0065 33.7 17.8 22 576-597 191-212 (526)
95 2no2_A HIP-I, huntingtin-inter 67.3 82 0.0028 29.4 16.4 11 508-518 26-36 (107)
96 3htk_A Structural maintenance 67.1 17 0.00058 29.9 7.2 44 892-935 14-57 (60)
97 1m1j_A Fibrinogen alpha subuni 66.9 1.3E+02 0.0045 34.7 16.3 31 553-583 132-162 (491)
98 1m1j_C Fibrinogen gamma chain; 66.5 85 0.0029 35.7 15.0 23 574-596 105-127 (409)
99 2y3a_B Phosphatidylinositol 3- 66.2 23 0.00079 38.6 10.0 117 524-645 10-130 (302)
100 1f5n_A Interferon-induced guan 65.3 2.2E+02 0.0076 33.7 20.4 15 641-655 568-582 (592)
101 3uux_B Mitochondrial division 65.2 41 0.0014 35.7 11.2 13 389-401 70-82 (242)
102 1x8y_A Lamin A/C; structural p 65.2 53 0.0018 29.4 10.5 52 534-585 30-81 (86)
103 1fxk_C Protein (prefoldin); ar 64.6 50 0.0017 31.1 10.9 39 607-645 90-128 (133)
104 2b5u_A Colicin E3; high resolu 64.1 2.2E+02 0.0075 33.2 21.4 14 168-181 184-197 (551)
105 2p22_C Protein SRN2; endosome, 63.2 1.4E+02 0.0047 30.6 15.4 22 576-597 130-151 (192)
106 3i00_A HIP-I, huntingtin-inter 63.0 45 0.0015 31.9 10.1 44 439-482 14-60 (120)
107 1bf5_A Signal transducer and a 62.3 2.3E+02 0.008 33.6 17.9 38 594-637 107-144 (575)
108 2xs1_A Programmed cell death 6 61.9 2.7E+02 0.0091 33.5 24.6 23 391-413 406-430 (704)
109 2xdj_A Uncharacterized protein 60.8 66 0.0022 28.8 10.2 36 516-551 25-60 (83)
110 3iv1_A Tumor susceptibility ge 60.5 93 0.0032 27.7 11.2 32 524-555 17-48 (78)
111 3iox_A AGI/II, PA; alpha helix 60.4 2E+02 0.0069 33.4 16.5 28 524-551 47-74 (497)
112 1gk4_A Vimentin; intermediate 59.5 95 0.0032 27.5 12.9 52 533-584 27-78 (84)
113 3s84_A Apolipoprotein A-IV; fo 58.5 2E+02 0.0067 30.8 28.5 20 664-683 226-245 (273)
114 4etp_A Kinesin-like protein KA 58.3 17 0.00057 41.1 7.4 50 531-580 9-58 (403)
115 2nrj_A HBL B protein; enteroto 57.9 1.9E+02 0.0065 31.9 15.6 64 617-680 255-325 (346)
116 3ghg_C Fibrinogen gamma chain; 57.3 1.2E+02 0.0041 34.6 13.9 27 430-456 35-61 (411)
117 2qih_A Protein USPA1; trimeric 56.9 1.5E+02 0.0052 29.0 19.8 17 610-626 133-149 (157)
118 1w1w_A Structural maintenance 56.7 3.4 0.00012 46.2 1.4 29 393-421 152-180 (430)
119 3iox_A AGI/II, PA; alpha helix 56.6 2.3E+02 0.0078 33.0 16.1 19 537-555 46-64 (497)
120 1wle_A Seryl-tRNA synthetase; 55.7 62 0.0021 37.6 11.7 33 483-515 70-102 (501)
121 1fxk_C Protein (prefoldin); ar 55.7 93 0.0032 29.2 11.1 37 485-521 3-39 (133)
122 1gk4_A Vimentin; intermediate 55.5 87 0.003 27.7 10.1 32 612-643 47-78 (84)
123 3edu_A Beta-I spectrin, spectr 55.4 1.7E+02 0.0057 29.1 15.6 28 577-604 111-138 (218)
124 3efg_A Protein SLYX homolog; x 54.9 38 0.0013 30.0 7.5 55 608-662 10-64 (78)
125 3nmd_A CGMP dependent protein 54.8 26 0.0009 30.8 6.3 45 850-894 21-65 (72)
126 3s84_A Apolipoprotein A-IV; fo 54.7 2.2E+02 0.0077 30.4 26.3 39 653-692 193-231 (273)
127 3qh9_A Liprin-beta-2; coiled-c 54.5 1.1E+02 0.0037 27.5 10.2 29 505-533 27-55 (81)
128 3iv1_A Tumor susceptibility ge 54.4 81 0.0028 28.1 9.4 57 544-601 16-72 (78)
129 3efg_A Protein SLYX homolog; x 54.3 29 0.00099 30.7 6.7 46 503-548 13-58 (78)
130 1d7m_A Cortexillin I; coiled-c 53.3 1.4E+02 0.0046 27.4 15.0 73 531-604 10-82 (101)
131 4emc_A Monopolin complex subun 51.9 41 0.0014 34.5 8.2 74 868-941 12-85 (190)
132 3mov_A Lamin-B1; LMNB1, B-type 50.9 74 0.0025 29.1 9.0 46 537-582 42-87 (95)
133 1bg1_A Protein (transcription 50.6 3.9E+02 0.013 31.9 19.3 38 594-637 120-157 (596)
134 1wt6_A Myotonin-protein kinase 49.8 1.4E+02 0.0049 26.7 10.2 24 556-579 34-57 (81)
135 3qne_A Seryl-tRNA synthetase, 49.4 65 0.0022 37.4 10.4 33 483-515 33-65 (485)
136 1x8y_A Lamin A/C; structural p 48.3 1.2E+02 0.0043 26.9 9.9 10 480-489 14-23 (86)
137 2w83_C C-JUN-amino-terminal ki 48.1 1.5E+02 0.0051 26.4 10.1 67 531-597 8-74 (77)
138 2dq0_A Seryl-tRNA synthetase; 47.9 62 0.0021 37.1 9.9 30 558-587 74-103 (455)
139 3hhm_B NISH2 P85alpha; PI3KCA, 47.9 3.3E+02 0.011 30.4 19.2 57 533-589 199-255 (373)
140 2pms_C Pneumococcal surface pr 46.7 1.2E+02 0.0042 29.2 10.1 26 570-595 64-89 (125)
141 3k29_A Putative uncharacterize 46.2 2.5E+02 0.0085 28.4 20.8 12 473-484 31-42 (169)
142 2zdi_C Prefoldin subunit alpha 45.9 34 0.0012 33.2 6.4 46 552-597 97-142 (151)
143 1wle_A Seryl-tRNA synthetase; 45.6 95 0.0033 36.1 11.1 36 909-944 121-156 (501)
144 3mov_A Lamin-B1; LMNB1, B-type 45.6 34 0.0012 31.4 5.9 27 613-639 59-85 (95)
145 2lw1_A ABC transporter ATP-bin 44.9 1.2E+02 0.0042 26.9 9.4 24 521-544 59-82 (89)
146 1jcd_A Major outer membrane li 44.4 91 0.0031 25.8 7.6 27 505-531 5-31 (52)
147 3ghg_C Fibrinogen gamma chain; 43.4 3.1E+02 0.011 31.2 14.5 88 832-926 43-134 (411)
148 3m9b_A Proteasome-associated A 43.4 24 0.00082 37.7 5.1 42 611-652 53-94 (251)
149 1t2k_D Cyclic-AMP-dependent tr 42.3 60 0.002 27.0 6.5 37 613-649 23-59 (61)
150 3k29_A Putative uncharacterize 42.3 2.8E+02 0.0097 27.9 21.7 44 476-519 20-63 (169)
151 3vp9_A General transcriptional 42.2 37 0.0013 31.1 5.5 34 820-856 10-44 (92)
152 2nrj_A HBL B protein; enteroto 41.8 97 0.0033 34.2 10.0 35 849-883 163-197 (346)
153 3thf_A Protein shroom; coiled- 41.4 3.1E+02 0.011 28.1 18.6 139 800-942 20-186 (190)
154 3trt_A Vimentin; cytoskeleton, 41.3 1.2E+02 0.004 26.0 8.5 57 881-937 18-75 (77)
155 4etp_A Kinesin-like protein KA 41.1 63 0.0021 36.4 8.5 18 686-703 156-173 (403)
156 4ad8_A DNA repair protein RECN 41.0 4.5E+02 0.015 29.9 18.3 17 402-418 162-178 (517)
157 4dvy_P Cytotoxicity-associated 40.8 5.2E+02 0.018 30.6 18.8 117 493-619 654-774 (876)
158 4h8s_A DCC-interacting protein 40.6 3.7E+02 0.013 29.5 14.6 152 772-923 6-173 (407)
159 3trt_A Vimentin; cytoskeleton, 40.4 1.7E+02 0.006 25.0 9.6 11 816-826 12-22 (77)
160 3uul_A Utrophin; spectrin repe 40.3 1.8E+02 0.0061 25.7 9.9 63 860-922 34-103 (118)
161 1fxk_A Prefoldin; archaeal pro 40.2 2E+02 0.0069 25.6 13.4 23 565-587 77-99 (107)
162 1yvl_A Signal transducer and a 40.2 5.8E+02 0.02 30.9 17.7 38 594-637 242-279 (683)
163 4fla_A Regulation of nuclear P 39.5 2.9E+02 0.0099 27.2 12.5 6 507-512 78-83 (152)
164 3ghg_B Fibrinogen beta chain; 39.3 4E+02 0.014 30.8 14.6 30 567-596 163-192 (461)
165 1ci6_A Transcription factor AT 39.2 77 0.0026 26.8 6.7 41 888-928 21-61 (63)
166 3uux_B Mitochondrial division 39.1 2E+02 0.0067 30.6 11.1 69 442-510 151-225 (242)
167 2dq0_A Seryl-tRNA synthetase; 39.0 88 0.003 35.9 9.4 41 906-946 71-111 (455)
168 3cl3_D NF-kappa-B essential mo 39.0 99 0.0034 29.9 8.1 89 466-564 13-101 (130)
169 1ses_A Seryl-tRNA synthetase; 38.9 77 0.0026 35.9 8.8 29 558-586 69-97 (421)
170 3u06_A Protein claret segregat 38.2 49 0.0017 37.5 7.0 20 559-578 37-56 (412)
171 3qne_A Seryl-tRNA synthetase, 38.2 1E+02 0.0036 35.7 9.8 39 907-945 74-112 (485)
172 3a7o_A Autophagy protein 16; c 37.8 1.5E+02 0.005 26.1 8.1 29 633-661 46-74 (75)
173 2l7b_A Apolipoprotein E, APO-E 37.3 1.3E+02 0.0046 32.7 10.0 17 675-692 263-279 (307)
174 2wt7_A Proto-oncogene protein 37.2 90 0.0031 26.2 6.8 37 613-649 24-60 (63)
175 3swy_A Cyclic nucleotide-gated 37.0 1E+02 0.0035 24.9 6.7 23 804-826 3-25 (46)
176 3he5_B Synzip2; heterodimeric 37.0 95 0.0033 24.7 6.3 41 480-520 7-47 (52)
177 3m91_A Proteasome-associated A 36.5 1.2E+02 0.0041 24.9 7.2 11 506-516 32-42 (51)
178 3caz_A BAR protein; thermo-aci 36.4 3.8E+02 0.013 27.6 12.5 80 819-902 97-186 (294)
179 2xv5_A Lamin-A/C; structural p 36.0 1.9E+02 0.0065 25.3 8.9 53 532-584 5-57 (74)
180 3uun_A Dystrophin; triple heli 35.9 2.2E+02 0.0077 24.9 11.4 65 858-922 32-103 (119)
181 2q6q_A Spindle POLE BODY compo 35.6 1.4E+02 0.0049 26.0 7.7 47 609-655 7-53 (74)
182 2p4r_T E3 ubiquitin-protein li 35.6 20 0.00069 25.7 2.1 16 204-219 5-20 (26)
183 3lss_A Seryl-tRNA synthetase; 35.6 1.6E+02 0.0055 34.1 10.8 35 482-516 36-70 (484)
184 1ses_A Seryl-tRNA synthetase; 35.4 97 0.0033 35.1 8.9 40 907-946 67-106 (421)
185 1nkp_B MAX protein, MYC proto- 35.2 78 0.0027 27.7 6.4 40 621-660 42-81 (83)
186 3s9g_A Protein hexim1; cyclin 34.8 1.9E+02 0.0064 26.9 8.8 47 607-653 39-85 (104)
187 2w83_C C-JUN-amino-terminal ki 34.5 2.5E+02 0.0085 25.0 9.5 30 559-588 43-72 (77)
188 2zdi_C Prefoldin subunit alpha 33.9 88 0.003 30.2 7.2 39 483-521 9-50 (151)
189 4ad8_A DNA repair protein RECN 33.7 5.8E+02 0.02 29.0 16.9 20 225-244 42-61 (517)
190 4hpq_C ATG17, KLTH0D15642P; au 33.5 5.8E+02 0.02 29.0 29.9 60 576-638 310-369 (413)
191 2q6q_A Spindle POLE BODY compo 33.0 1.7E+02 0.0058 25.5 7.7 48 493-540 6-53 (74)
192 1go4_E MAD1 (mitotic arrest de 32.7 1.7E+02 0.0057 27.2 8.3 17 574-590 75-91 (100)
193 3swf_A CGMP-gated cation chann 32.5 1.4E+02 0.0047 26.5 7.3 49 804-862 5-53 (74)
194 1lwu_C Fibrinogen gamma chain; 32.4 84 0.0029 34.7 7.5 20 494-513 9-28 (323)
195 2ke4_A CDC42-interacting prote 32.1 2.5E+02 0.0086 25.8 9.5 33 564-596 19-51 (98)
196 1ez3_A Syntaxin-1A; three heli 32.1 3E+02 0.01 25.2 14.0 31 465-495 8-38 (127)
197 3qh9_A Liprin-beta-2; coiled-c 31.7 2.9E+02 0.0097 24.8 10.6 45 476-527 26-70 (81)
198 1ci6_A Transcription factor AT 31.3 1.5E+02 0.005 25.0 7.2 35 614-648 25-59 (63)
199 2k48_A Nucleoprotein; viral pr 31.0 2.8E+02 0.0097 26.0 9.5 59 869-927 35-98 (107)
200 1quu_A Human skeletal muscle a 30.9 4.3E+02 0.015 26.7 22.1 33 484-516 49-81 (250)
201 4dk0_A Putative MACA; alpha-ha 30.9 2E+02 0.0069 30.8 10.2 15 578-592 133-147 (369)
202 2yy0_A C-MYC-binding protein; 30.3 83 0.0028 25.9 5.3 30 628-657 21-50 (53)
203 3u06_A Protein claret segregat 30.3 1.1E+02 0.0039 34.5 8.3 52 610-661 8-59 (412)
204 1gqe_A Release factor 2, RF2; 30.0 3.3E+02 0.011 30.5 11.7 18 908-925 98-115 (365)
205 2avr_X Adhesion A; antiparalle 29.9 3.7E+02 0.013 25.7 13.2 20 570-589 85-104 (119)
206 3c9i_A Tail needle protein GP2 29.9 3.5E+02 0.012 28.2 10.8 23 505-527 92-114 (242)
207 3c9i_A Tail needle protein GP2 29.7 4.3E+02 0.015 27.5 11.4 47 466-512 81-127 (242)
208 2lf0_A Uncharacterized protein 29.6 64 0.0022 30.9 5.1 54 830-885 6-59 (123)
209 1ik9_A DNA repair protein XRCC 29.0 5E+02 0.017 26.8 14.2 10 360-369 51-60 (213)
210 3iyk_A VP5; icosahedral virus; 28.5 7.7E+02 0.026 28.8 17.0 73 863-935 154-228 (526)
211 2b5u_A Colicin E3; high resolu 28.2 7.8E+02 0.027 28.8 22.6 11 209-219 140-150 (551)
212 1jnm_A Proto-oncogene C-JUN; B 28.2 65 0.0022 26.9 4.5 34 614-647 24-57 (62)
213 3a7o_A Autophagy protein 16; c 28.1 2.8E+02 0.0096 24.3 8.3 56 863-925 19-74 (75)
214 3pe0_A Plectin; cytoskeleton, 27.9 5.6E+02 0.019 27.1 14.9 31 486-516 44-74 (283)
215 1t3j_A Mitofusin 1; coiled coi 27.4 2.1E+02 0.0073 26.4 8.0 63 434-497 30-92 (96)
216 1gmj_A ATPase inhibitor; coile 27.2 1.3E+02 0.0043 27.3 6.3 44 618-661 36-79 (84)
217 3ra3_B P2F; coiled coil domain 26.8 45 0.0015 23.7 2.6 24 485-508 2-25 (28)
218 4fla_A Regulation of nuclear P 26.2 4.8E+02 0.016 25.7 11.6 32 866-897 72-103 (152)
219 2efk_A CDC42-interacting prote 25.7 5.7E+02 0.019 26.4 27.4 25 397-421 10-34 (301)
220 4dzn_A Coiled-coil peptide CC- 25.5 1.2E+02 0.0042 22.2 4.7 19 897-915 9-27 (33)
221 3tul_A Cell invasion protein S 25.2 5.1E+02 0.017 25.7 11.0 23 575-597 70-92 (158)
222 1nfn_A Apolipoprotein E3; lipi 25.0 5.4E+02 0.018 25.9 13.6 24 581-604 106-129 (191)
223 4ani_A Protein GRPE; chaperone 25.0 3E+02 0.01 28.6 9.7 65 526-590 60-126 (213)
224 3he5_A Synzip1; heterodimeric 25.0 2.5E+02 0.0085 22.2 6.7 14 569-582 33-46 (49)
225 1nkp_A C-MYC, MYC proto-oncoge 24.6 1.3E+02 0.0045 26.9 6.1 40 621-660 47-86 (88)
226 3aco_A Pacsin2, protein kinase 24.3 6.8E+02 0.023 26.8 20.7 20 402-421 37-56 (350)
227 3he5_B Synzip2; heterodimeric 24.3 2.7E+02 0.0093 22.2 6.9 22 566-587 23-44 (52)
228 2pms_C Pneumococcal surface pr 24.2 3E+02 0.01 26.5 8.7 19 438-456 11-29 (125)
229 2yy0_A C-MYC-binding protein; 24.2 1.2E+02 0.0042 24.9 5.3 29 621-649 21-49 (53)
230 1ykh_B RNA polymerase II holoe 24.1 1.7E+02 0.0058 28.1 7.1 67 501-567 54-120 (132)
231 1hjb_A Ccaat/enhancer binding 24.0 2.9E+02 0.0099 24.9 8.2 21 483-503 43-63 (87)
232 3abh_A Pacsin2, protein kinase 23.5 6.5E+02 0.022 26.3 23.3 21 401-421 36-56 (312)
233 3lss_A Seryl-tRNA synthetase; 23.5 3E+02 0.01 31.9 10.3 37 910-946 109-146 (484)
234 1t6f_A Geminin; coiled-coil, c 23.2 1.4E+02 0.0047 23.1 4.8 27 627-653 8-34 (37)
235 2x3v_A Syndapin I, protein kin 23.1 6.9E+02 0.024 26.4 27.7 24 398-421 24-47 (337)
236 1cun_A Protein (alpha spectrin 22.9 5.2E+02 0.018 24.9 21.9 27 486-512 36-62 (213)
237 2dq3_A Seryl-tRNA synthetase; 22.8 67 0.0023 36.4 4.7 30 559-588 74-103 (425)
238 3kbt_A Beta-I spectrin, spectr 22.7 6.5E+02 0.022 26.0 29.9 31 430-460 80-110 (326)
239 1nlw_A MAD protein, MAX dimeri 22.7 1.5E+02 0.0052 26.0 6.0 36 622-657 43-78 (80)
240 1hjb_A Ccaat/enhancer binding 22.4 2E+02 0.0067 26.1 6.7 36 616-651 40-75 (87)
241 3auy_A DNA double-strand break 22.4 5.3E+02 0.018 27.9 11.7 28 394-421 136-163 (371)
242 2l5g_B Putative uncharacterize 22.4 1.5E+02 0.0051 23.6 5.1 29 560-588 9-37 (42)
243 2a01_A Apolipoprotein A-I; fou 22.3 4.1E+02 0.014 27.6 10.3 108 569-684 50-162 (243)
244 1qu7_A Methyl-accepting chemot 22.2 6.5E+02 0.022 25.8 16.7 71 434-504 50-129 (227)
245 3uul_A Utrophin; spectrin repe 22.0 4E+02 0.014 23.3 10.4 27 486-512 39-65 (118)
246 2xu6_A MDV1 coiled coil; prote 21.9 4.1E+02 0.014 23.4 9.2 40 497-536 7-46 (72)
247 3ibp_A Chromosome partition pr 21.5 4.2E+02 0.014 29.0 10.1 36 495-530 8-43 (302)
248 3fpp_A Macrolide-specific effl 21.4 3.1E+02 0.011 29.0 9.4 26 902-927 119-144 (341)
249 1nyh_A Regulatory protein SIR4 21.2 5.3E+02 0.018 24.7 9.6 77 854-937 76-152 (166)
250 3r2p_A Apolipoprotein A-I; amp 21.2 6.1E+02 0.021 25.1 11.2 53 631-683 109-162 (185)
251 1gk6_A Vimentin; intermediate 21.1 3.3E+02 0.011 22.6 7.4 46 538-583 6-51 (59)
252 2yko_A LINE-1 ORF1P; RNA-bindi 20.7 1.6E+02 0.0054 31.2 6.6 9 697-705 125-133 (233)
253 3tkl_B LIDA protein, substrate 20.6 60 0.002 34.0 3.3 63 457-523 13-75 (267)
254 3onj_A T-snare VTI1; helix, HA 20.6 4.7E+02 0.016 23.5 10.2 88 562-654 3-94 (97)
255 1gmj_A ATPase inhibitor; coile 20.5 4.7E+02 0.016 23.6 9.7 20 572-591 56-75 (84)
256 3qks_A DNA double-strand break 20.4 95 0.0033 30.9 4.8 45 397-447 145-189 (203)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.19 E-value=2.8e-07 Score=93.69 Aligned_cols=183 Identities=14% Similarity=0.137 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
..+...+..++.++..+..++..+......+..++..+...+..+...+..+...+..+...+..+...+..+...+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (284)
T 1c1g_A 72 ELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA 151 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHH
Q 002131 545 GEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRL 624 (961)
Q Consensus 545 ~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerL 624 (961)
...+..+ +..+..+...+..+...+..+...+..+...+..+...+ ..+... +..+...+..+...+..+
T Consensus 152 ~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~ 221 (284)
T 1c1g_A 152 KHIAEDA-------DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEI-KTVTNN--LKSLEAQAEKYSQKEDKY 221 (284)
T ss_dssp HHHHHHH-------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHhHHHHHHHHHHH
Confidence 4444444 444444444444444444444444444444444444443 222222 222333333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002131 625 TGVEMSLRREIESYRVEVDSLRHENISLLNRLK 657 (961)
Q Consensus 625 t~~eE~LReELEsle~EIEsLReEl~~L~rRLq 657 (961)
......++.++..+...+..+...+..+...+.
T Consensus 222 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (284)
T 1c1g_A 222 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSID 254 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.16 E-value=1.5e-07 Score=95.58 Aligned_cols=104 Identities=9% Similarity=0.082 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002131 553 ADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLR 632 (961)
Q Consensus 553 Eeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LR 632 (961)
..+..++..+......+..+...+..+...+..+...+..+...+ ..+... +..+...+..+...+..+......+.
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (284)
T 1c1g_A 146 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKC-AELEEE--IKTVTNNLKSLEAQAEKYSQKEDKYE 222 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444444444444 333322 33333333333333344434444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002131 633 REIESYRVEVDSLRHENISLLNRLKGN 659 (961)
Q Consensus 633 eELEsle~EIEsLReEl~~L~rRLq~~ 659 (961)
.++..+..++..+...+..+...+..+
T Consensus 223 ~~l~~l~~~~~~~~~~~~~~~~~~~~~ 249 (284)
T 1c1g_A 223 EEIKVLSDKLKEAETRAEFAERSVTKL 249 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.88 E-value=2.6e-09 Score=134.76 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=37.7
Q ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 426 SAKEELRM---VKADLESRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTF 502 (961)
Q Consensus 426 ~t~enL~R---i~~ELe~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~l 502 (961)
.++++|.+ .+.+++.++.+|+.++..++..++.+.... .+....+..++.++..+++++..++++...+..++..+
T Consensus 868 el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l-~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el 946 (1184)
T 1i84_S 868 RTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY-AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQL 946 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666 677788888888888888877772222211 12223333333444444444444444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 503 NEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 503 eeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl 544 (961)
+..+..+...+..++.+++.++..++.+..++..++..+.++
T Consensus 947 ~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l 988 (1184)
T 1i84_S 947 QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988 (1184)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.68 E-value=3.9e-08 Score=124.12 Aligned_cols=12 Identities=8% Similarity=0.703 Sum_probs=7.5
Q ss_pred cccccchhhhcc
Q 002131 239 LRFSSRDWVENG 250 (961)
Q Consensus 239 ~~~~~~~~~~~~ 250 (961)
..|+...|++.-
T Consensus 589 V~Y~~~gfl~kN 600 (1184)
T 1i84_S 589 VTYNASAWLTKN 600 (1184)
T ss_dssp EEEECTTHHHHH
T ss_pred EEeccCCchhhc
Confidence 556677777643
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.90 E-value=0.00084 Score=71.36 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhhhhHH
Q 002131 632 RREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMKLDKE 673 (961)
Q Consensus 632 ReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~kl~~E 673 (961)
-.+++.++..++.+...+..+...|.....+.+..+..++.+
T Consensus 117 ~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 117 QNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.77 E-value=0.0082 Score=59.85 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=100.7
Q ss_pred HHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 456 LEKELDRRS---SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTE 532 (961)
Q Consensus 456 LEKEL~rrq---nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEelee 532 (961)
+|..|.+.. .....++..++.+.+..-+.++.|+-...........++.+|..++.++...+..-+-....+.+++.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355565555 55677777788888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 533 ENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLL 580 (961)
Q Consensus 533 ELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq 580 (961)
+|+.++..+..-+..|....++|++.-.++..+......++++|++|.
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888888888875
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.72 E-value=0.0052 Score=65.25 Aligned_cols=13 Identities=0% Similarity=0.079 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 002131 635 IESYRVEVDSLRH 647 (961)
Q Consensus 635 LEsle~EIEsLRe 647 (961)
+..++.++..+..
T Consensus 152 ~~e~~~e~~~l~~ 164 (256)
T 3na7_A 152 VKNIKETQQIIFK 164 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.59 E-value=0.062 Score=73.99 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=72.2
Q ss_pred hhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 002131 790 MRSELKAETLLTSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKDESINQLQI 869 (961)
Q Consensus 790 lr~klkses~~~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D~I~~lq~ 869 (961)
+-|.+.-+.+-.++|-..|..|.-+++..+.++-... ...+..++.++++|=.. +..-+-+|.+.++-|+.|+.
T Consensus 2299 INFtvT~~GLedQLL~~vv~~ErPeLE~~r~~Li~~~---~~~k~~L~~LEd~lL~~---Ls~s~GniLdd~~LI~~L~~ 2372 (3245)
T 3vkg_A 2299 VNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQ---GEFQVKLRILEKSLLNA---LSQASGNILDDDSVISTLET 2372 (3245)
T ss_dssp EECCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTT---HHHHHHHHTTTHHHHHH---HHTTSSCGGGCHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHhCCCcccccHHHHHHHHH
Confidence 5566666666688888888888888877776555544 55555555555543221 11112345555556777665
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 002131 870 DLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLL 909 (961)
Q Consensus 870 dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~ 909 (961)
- +....+|+..-..-+....+++...+...|+-.+-..+
T Consensus 2373 s-K~~s~eI~~kl~~a~~te~~I~~~R~~YrpvA~r~s~L 2411 (3245)
T 3vkg_A 2373 L-KKETTEIALKVEETETVMQEISEVSALYNPMALSCSRV 2411 (3245)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4 44456777777777888888888888888877665443
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.57 E-value=0.009 Score=61.27 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 628 EMSLRREIESYRVEVDSLRHENISLLN 654 (961)
Q Consensus 628 eE~LReELEsle~EIEsLReEl~~L~r 654 (961)
++.|+.+++-++-++..|++++..+.+
T Consensus 156 Ke~l~~~~QRLkdE~rDLk~El~v~~~ 182 (189)
T 2v71_A 156 KESLLVSVQRLKDEARDLRQELAVRER 182 (189)
T ss_dssp HHHHHCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666666666666666666665543
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.48 E-value=0.014 Score=59.92 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 569 CKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIE 636 (961)
Q Consensus 569 i~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELE 636 (961)
+..++++|+.++..+..+.+.|..|++.- ..++.. .......++.+...+..+....-=|..+|.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~N-DdlEr~--~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQAN-DDLERA--KRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666665 555544 555555555566666666555555555554
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.38 E-value=0.075 Score=53.01 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 442 TRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLK 521 (961)
Q Consensus 442 LepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe 521 (961)
+..|+.|...|...-++.++.-.. +...+...+........++..|++........+-.++..-..+..+...++.+|.
T Consensus 2 ~~~lE~qlkeaae~ad~KyeEvaR-~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk 80 (155)
T 2efr_A 2 MKQLEDKVEELLSKNYHLENEVAR-LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIK 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHH
Confidence 344555555552222332222221 4444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 522 DLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGL 593 (961)
Q Consensus 522 ~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~L 593 (961)
.++..+..+..--+.++..+..+....+.++..+..-+..+..+...+..+-.+|..+......++..|..|
T Consensus 81 ~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 81 VLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 444444444444444444445555555555555555555555555555555566666555555555555444
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.21 E-value=0.049 Score=68.66 Aligned_cols=8 Identities=13% Similarity=0.173 Sum_probs=3.8
Q ss_pred HHHhhhhH
Q 002131 411 LEVSGLLQ 418 (961)
Q Consensus 411 EEaaGi~K 418 (961)
..||-++.
T Consensus 816 ~~AAi~IQ 823 (1080)
T 2dfs_A 816 TRAAIIIQ 823 (1080)
T ss_dssp HHHHHHHH
T ss_pred chhHHHHH
Confidence 34555444
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.09 E-value=0.098 Score=72.14 Aligned_cols=102 Identities=17% Similarity=0.123 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002131 801 TSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKDESINQLQIDLQDSAKELKI 880 (961)
Q Consensus 801 ~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~ 880 (961)
.+=|.+++...-...++ -.+..++..|..+....+.++++||.+|...-- .-+.+|=+.+.-|..
T Consensus 2305 ~~GLedQLL~~vv~~Er------------PeLE~~r~~Li~~~~~~k~~L~~LEd~lL~~Ls---~s~GniLdd~~LI~~ 2369 (3245)
T 3vkg_A 2305 PSSLQSQCLHEALKTER------------PDTHKKRSDLLKIQGEFQVKLRILEKSLLNALS---QASGNILDDDSVIST 2369 (3245)
T ss_dssp HHHHHHHHHHHHHHHHC------------HHHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHH---TTSSCGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCcccccHHHHHH
Confidence 45567776665544433 234455566667777777888888888766533 122233333444444
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002131 881 MKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKK 918 (961)
Q Consensus 881 ~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk 918 (961)
++.. +....++..--++++....+++.+.+.|.-+..
T Consensus 2370 L~~s-K~~s~eI~~kl~~a~~te~~I~~~R~~YrpvA~ 2406 (3245)
T 3vkg_A 2370 LETL-KKETTEIALKVEETETVMQEISEVSALYNPMAL 2406 (3245)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3332 344445555555566666666666666555444
No 14
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.00 E-value=0.089 Score=53.02 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 621 QMRLTGVEMSLRREIESYRVEVDSLR 646 (961)
Q Consensus 621 lerLt~~eE~LReELEsle~EIEsLR 646 (961)
+..+......|.+.|..++++..++.
T Consensus 113 ~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 113 LEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333344555555555555555555
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.81 E-value=0.0086 Score=69.52 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002131 628 EMSLRREIESYRVEVDSLRHENISLLNRLKGN 659 (961)
Q Consensus 628 eE~LReELEsle~EIEsLReEl~~L~rRLq~~ 659 (961)
.+..++.+..+++++..++.++..+..++++.
T Consensus 553 ~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 553 LDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444444444444444455555554444443
No 16
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.68 E-value=0.17 Score=50.35 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 501 TFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLL 580 (961)
Q Consensus 501 ~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq 580 (961)
.+..|+..+-++...++..+-....+++.....+..++.. ++.++.+..+......++..+...+..-+
T Consensus 3 sLStKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~-----------r~~~~~l~~~~~~~~~e~~~L~~~l~~E~ 71 (154)
T 2ocy_A 3 ALSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQL-----------KEDYNTLKRELSDRDDEVKRLREDIAKEN 71 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH-----------HHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3555666666666666666666666655555444443322 22233334445556666666777777777
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002131 581 RTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNG 660 (961)
Q Consensus 581 ~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ 660 (961)
......++...++++++ +++-.. =|++..+=|..-+.+...+...-..|+.++...+.-++.+..++..|..-+..+.
T Consensus 72 ~~R~~aE~~~~~ie~El-EeLTas-LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 72 ELRTKAEEEADKLNKEV-EDLTAS-LFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHTHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777778887 555444 4888888888889999999999999999999999999999999999999988887
Q ss_pred Cch
Q 002131 661 KES 663 (961)
Q Consensus 661 ne~ 663 (961)
++.
T Consensus 150 ~e~ 152 (154)
T 2ocy_A 150 NES 152 (154)
T ss_dssp ---
T ss_pred hcc
Confidence 764
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.56 E-value=0.046 Score=68.88 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 617 LQREQMRLTGVEMSLRREIESYRVEVDSLR 646 (961)
Q Consensus 617 lq~ElerLt~~eE~LReELEsle~EIEsLR 646 (961)
++..+..|..+...|++++.+++..+....
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555544444333
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.54 E-value=0.015 Score=67.46 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=9.6
Q ss_pred cccCCCChhHHHHHHhcC
Q 002131 385 LHDTGFDVPAMIQTIRIL 402 (961)
Q Consensus 385 ~~~~~~~~~~~~~~i~~~ 402 (961)
+.+..|++..+...+...
T Consensus 352 l~~N~~~~~~~~~~~~~~ 369 (597)
T 3oja_B 352 LSHNDWDCNSLRALFRNV 369 (597)
T ss_dssp CCSSCEEHHHHHHHTTTC
T ss_pred eeCCCCCChhHHHHHHHH
Confidence 345566666555554433
No 19
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.36 E-value=0.63 Score=46.95 Aligned_cols=97 Identities=19% Similarity=0.254 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHH--HHH----HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 440 SRTRRLEREKVELQSGL--EKE----LDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMI 513 (961)
Q Consensus 440 ~QLepLEkQaekAK~yL--EKE----L~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kI 513 (961)
..+..|++|..++..-+ |.+ +...+.++...+..++....-|++++.-|......|+.++..+...+..=....
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r 85 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR 85 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777 322 223337777777777777777888888888888888888877777776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 514 THSEQQLKDLTRRAEQYTEENGD 536 (961)
Q Consensus 514 e~leeqIe~ltselEeleeELee 536 (961)
....+-+..++..+..+..+++.
T Consensus 86 ~q~se~~~elq~ri~~L~~El~~ 108 (168)
T 3o0z_A 86 GHDSEMIGDLQARITSLQEEVKH 108 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444444433333
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.60 E-value=1.3 Score=42.52 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAG 592 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~ 592 (961)
...+.+.......+...-..++..|..+++.|..
T Consensus 89 ~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 89 NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444443333
No 21
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.91 E-value=1.1 Score=42.61 Aligned_cols=92 Identities=16% Similarity=0.260 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 473 KYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAE 552 (961)
Q Consensus 473 ~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeae 552 (961)
.|+.++.-|+.+|..+...+.++.-++.++..-..+.+.+.+.--......+.++..++..+++.--...++..+.+.++
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 57778888888888888888888888888888888887777665555666677777777777777777777888888888
Q ss_pred HHHHHHHHHHHH
Q 002131 553 ADLYCIKRNFEE 564 (961)
Q Consensus 553 Eeld~iR~e~eE 564 (961)
+++..++..+++
T Consensus 97 eEl~FLKk~hee 108 (119)
T 3ol1_A 97 EEIAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776654
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.88 E-value=1.2 Score=41.30 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSE 585 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~ 585 (961)
...+.+.......++.+++.|.+.|.-
T Consensus 71 ~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 71 EDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444443
No 23
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.62 E-value=1.2 Score=40.97 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 508 ESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQ 586 (961)
Q Consensus 508 El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~l 586 (961)
.+.++...++.++..+.....++..++..+...+..+...++.+.+.+..+...+........+++.+++.|.+.|.-+
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444444444444444444444444444444444444455555555555555433
No 24
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=93.95 E-value=4.9 Score=38.99 Aligned_cols=58 Identities=7% Similarity=0.079 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 524 TRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLR 581 (961)
Q Consensus 524 tselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~ 581 (961)
+.+++.+-.-|.+-+-.+++++.+-..-+.++..+|.+...++++..+..+.+.+-..
T Consensus 31 qeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~ 88 (167)
T 4gkw_A 31 QEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQ 88 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhH
Confidence 3333333333333344444444444444455555555555555555555555554433
No 25
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.64 E-value=6.3 Score=39.26 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 533 ENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEM 567 (961)
Q Consensus 533 ELeeleqeleEl~ee~qeaeEeld~iR~e~eElee 567 (961)
++..+...+.+-+.....++..+..+..+++++-.
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 26
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=93.63 E-value=5.6 Score=38.59 Aligned_cols=114 Identities=19% Similarity=0.236 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 002131 484 RVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIK--RN 561 (961)
Q Consensus 484 RlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR--~e 561 (961)
+|..|+.-..+++++++.....+.-+-..+.+-..++.+++..-...+.+|..+..+..-++..++.+...+..-- .+
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQn 91 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQN 91 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHh
Confidence 3556666666677777766666666666666666666666666666666666666666666655555544331111 01
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 562 FEE-KEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 562 ~eE-leeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
... --+.+.+++.++.....-+..+-.||--|+.+|
T Consensus 92 QQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKEL 128 (167)
T 4gkw_A 92 QQSLDMRKLGELEADLKEKDSMVESLTETIGILRKEL 128 (167)
T ss_dssp HHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHH
Confidence 000 112234555556666666666666666666665
No 27
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.32 E-value=1.2 Score=43.89 Aligned_cols=107 Identities=20% Similarity=0.194 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 484 RVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFE 563 (961)
Q Consensus 484 RlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~e 563 (961)
||.-|++...+.+..++....++.++...-++.+.....+......-.+.+..++..+.+....-..+ -..|.
T Consensus 4 ri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeea-------drKye 76 (147)
T 2b9c_A 4 RIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA-------DRKYE 76 (147)
T ss_dssp -------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH-------HHhHH
Confidence 44445555555555555555555555555555544444444444444444444444444444433333 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 564 EKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 564 Eleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
+....+.-++.++.+........+..|..|+.+|
T Consensus 77 E~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL 110 (147)
T 2b9c_A 77 EVARKLVIIESDLERAEERAELSEGKCAELEEEL 110 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555555555555
No 28
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=93.15 E-value=2.5 Score=42.74 Aligned_cols=141 Identities=12% Similarity=0.105 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhH
Q 002131 524 TRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT----IAGLRDGFSD 599 (961)
Q Consensus 524 tselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt----Ie~LrqEL~e 599 (961)
+..++.+-..|.++...+.++...|+..-+++.....++..+..-+.....-|..+..+|..+++- |++.+.+
T Consensus 9 ~~~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e--- 85 (170)
T 3l4q_C 9 EDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRRE--- 85 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSC---
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh---
Confidence 345677778888888888888888888888888888888888888888888888888888665542 1111111
Q ss_pred hhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhHhh
Q 002131 600 QIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKESAALTMK 669 (961)
Q Consensus 600 Eleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne~~~~~~k 669 (961)
..+.+ +.-+..+-+.++..+..|......|.+.|.........+..+++.+.-.|..+...-+-.+.-
T Consensus 86 ~~~~E--~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~w 153 (170)
T 3l4q_C 86 GNEKE--MQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVW 153 (170)
T ss_dssp CCSSS--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 11122 344556677788888888888888888888877777778877777776655554444433333
No 29
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.13 E-value=0.59 Score=46.18 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 472 EKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAA 551 (961)
Q Consensus 472 ~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qea 551 (961)
.-++.+..+..+|+.....+...+...-...+.....+.++-..-+..+..++..+..++.-.+.....+.+.--++..+
T Consensus 6 ~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~ 85 (147)
T 2b9c_A 6 QLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVII 85 (147)
T ss_dssp -----CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555555555555555555555555555555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 552 EADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 552 eEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEK 588 (961)
..++.............+..++.+|....+.++.++-
T Consensus 86 E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 86 ESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6666666666666666666666666666555555443
No 30
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.10 E-value=3.4 Score=39.21 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 512 MITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRA 550 (961)
Q Consensus 512 kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qe 550 (961)
.|..+..+|..++.+...+.-++.+++..+++++.+|+.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444444444555555555555555555555555544
No 31
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.04 E-value=2.2 Score=40.86 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 533 ENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLR 581 (961)
Q Consensus 533 ELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~ 581 (961)
++..+...+..+..++..++.++...-.+|.++-+--..|.-+|+.++.
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666666666666676666666667777766654
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.44 E-value=2.2 Score=40.96 Aligned_cols=50 Identities=8% Similarity=0.134 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 533 ENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRT 582 (961)
Q Consensus 533 ELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~ 582 (961)
++..+...+..+..+...++.++...-.+|.++-+--..|..+|+.++.-
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkL 127 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRL 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555566666666666666666677776666666777777766553
No 33
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=92.35 E-value=1.3 Score=41.93 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHH
Q 002131 538 RQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALL 617 (961)
Q Consensus 538 eqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~l 617 (961)
...+.++++.+.....++..+... +.....+..++|..|..++...+..+..+++.| .... ...
T Consensus 12 q~~~~ql~~qL~k~~~~r~~Le~~---w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~f-sq~q------------~~v 75 (112)
T 1x79_B 12 QLMLRQANDQLEKTMKDKQELEDF---IKQSSEDSSHQISALVLRAQASEILLEELQQGL-SQAK------------RDV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------------HHH
Confidence 333334444343343333333333 555566778899999999999999999999988 4443 347
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 618 QREQMRLTGVEMSLRREIESYRVEVDSLRHE 648 (961)
Q Consensus 618 q~ElerLt~~eE~LReELEsle~EIEsLReE 648 (961)
+..+..|+...+.+-.+|..+..+.+.|...
T Consensus 76 q~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 76 QEQMAVLMQSREQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 7788888888888888888888888877643
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.16 E-value=1.7 Score=49.36 Aligned_cols=28 Identities=18% Similarity=0.046 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRRE 634 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReE 634 (961)
+++++..++.....+..+...+..|..+
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 458 NGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 3334444444555555555555444443
No 35
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.91 E-value=5.5 Score=36.58 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 555 LYCIKRNFEEKEMECKDLQKSITRLLRTCSE 585 (961)
Q Consensus 555 ld~iR~e~eEleeei~eleKeIa~Lq~~Ik~ 585 (961)
+..++..+.+...+...++..+.-.+.++..
T Consensus 62 yn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 62 YSEFKRQQLELDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443333333333
No 36
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=91.74 E-value=8 Score=35.68 Aligned_cols=103 Identities=11% Similarity=0.189 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 482 RERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRN 561 (961)
Q Consensus 482 rERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e 561 (961)
++.+.++-...+-+..++.....-+..+...|+.-.+.|..--..+......+.....-+...+.+..+-.++|.++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaq 84 (114)
T 2xzr_A 5 EDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDK 84 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666655555556666555555554444444444444445555555566666666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 562 FEEKEMECKDLQKSITRLLRTCS 584 (961)
Q Consensus 562 ~eEleeei~eleKeIa~Lq~~Ik 584 (961)
..++...++-++++|++++.-|+
T Consensus 85 saaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 85 IEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777777888888887776654
No 37
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=91.39 E-value=3.4 Score=37.78 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 474 YQMEEQRLRERVRELAEQNVSLQREVSTFNER 505 (961)
Q Consensus 474 ~EsEkk~LrERlreLeEknvsLqrEIe~leeK 505 (961)
+.+..-..=++||+|+++|..|..+|..+..+
T Consensus 14 LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444445578889999988888888777654
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.39 E-value=2 Score=41.07 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 614 VALLQREQMRLTGVEMSLRREIESYR 639 (961)
Q Consensus 614 Ie~lq~ElerLt~~eE~LReELEsle 639 (961)
++.+-.+...|-.++..|.-||..++
T Consensus 98 ~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 98 MARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555554443
No 39
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.36 E-value=2.6 Score=39.00 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 002131 549 RAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVE 628 (961)
Q Consensus 549 qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~e 628 (961)
..+++.++.+..++.....++..+...+..-+......++....+++++ +++-.. =+++..+-|..-+.+...+...-
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El-EeLTas-LFeEAN~MVa~ar~e~~~~e~kn 85 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV-EDLTAS-LFDEANNMVADARKEKYAIEILN 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444445555555555555555 333222 24444444444444444444444
Q ss_pred HHHHHHHH
Q 002131 629 MSLRREIE 636 (961)
Q Consensus 629 E~LReELE 636 (961)
.+|+.+|.
T Consensus 86 ~~L~~qL~ 93 (97)
T 2eqb_B 86 KRLTEQLR 93 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.28 E-value=2 Score=49.88 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=25.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 533 ENGDLRQNLS-ELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAG 592 (961)
Q Consensus 533 ELeeleqele-El~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~ 592 (961)
++++...++. +|+..++.+++++ .....+|..|++.|..+...|++||.-|..
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekV-------dnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKV-------IEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 4555555444444 433444555555555555555555555433
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.55 E-value=2 Score=41.98 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 002131 480 RLRERVRELA 489 (961)
Q Consensus 480 ~LrERlreLe 489 (961)
.+.++++++.
T Consensus 36 ~vd~km~ei~ 45 (138)
T 3hnw_A 36 YINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 42
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.54 E-value=1.7 Score=41.73 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 614 VALLQREQMRLTGVEMSLRREIESYRV 640 (961)
Q Consensus 614 Ie~lq~ElerLt~~eE~LReELEsle~ 640 (961)
++.+-.+...|-.++..|.-||..++.
T Consensus 100 m~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 100 MEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555443
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.12 E-value=6.9 Score=36.22 Aligned_cols=16 Identities=13% Similarity=0.056 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002131 548 FRAAEADLYCIKRNFE 563 (961)
Q Consensus 548 ~qeaeEeld~iR~e~e 563 (961)
|++|...+-..+.+..
T Consensus 64 FeEAN~MVa~ar~e~~ 79 (97)
T 2eqb_B 64 FDEANNMVADARKEKY 79 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444433333
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.01 E-value=2.9 Score=40.82 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 558 IKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 558 iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
++.++...+.++..+.+++..++..+..++..+..|+.++
T Consensus 94 lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 94 LKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444333
No 45
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.79 E-value=5.1 Score=37.78 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 557 CIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 557 ~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
-.+..|.........++.++..|..++..+++.
T Consensus 73 IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 73 IYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.69 E-value=3 Score=37.48 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 466 DWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKD 522 (961)
Q Consensus 466 E~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ 522 (961)
.+..||...=..+..|+-++.+|.++|..+..+...+.+....+...+..+.++...
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666666666655555555544444444444333333
No 47
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=89.04 E-value=14 Score=33.97 Aligned_cols=71 Identities=17% Similarity=0.352 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 479 QRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFR 549 (961)
Q Consensus 479 k~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~q 549 (961)
.-+...++.|......+..+|..++.....+...|..++.+...+..+-+..-.+...+.-.+-+..++.+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~ 77 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELK 77 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555444444444444433333333333333333333333
No 48
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.69 E-value=6.4 Score=35.38 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 500 STFNEREAESRSMITHSEQQLKD 522 (961)
Q Consensus 500 e~leeKi~El~~kIe~leeqIe~ 522 (961)
+.++.||..+-+.|+-+...++.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieE 31 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEE 31 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 49
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.67 E-value=3.3 Score=48.08 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002131 887 KVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDL 927 (961)
Q Consensus 887 ~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi 927 (961)
.|+..+..|..+|..-..++..|++-|+.+..+|..|+-||
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555555555555555555555554
No 50
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.57 E-value=17 Score=34.44 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 495 LQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKF 548 (961)
Q Consensus 495 LqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~ 548 (961)
|+++|+.+......+...|..+++..+.++...-.+...|++++..+...-++-
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErn 93 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERN 93 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333
No 51
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.56 E-value=5.8 Score=35.72 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 514 THSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRA 550 (961)
Q Consensus 514 e~leeqIe~ltselEeleeELeeleqeleEl~ee~qe 550 (961)
..+..+|..++.+-..+.-++.++...++..+.+|+.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~ 39 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 39 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444444444433
No 52
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.43 E-value=13 Score=41.82 Aligned_cols=37 Identities=8% Similarity=0.130 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 479 QRLRERVRELAEQNVSLQREVSTFNEREAESRSMITH 515 (961)
Q Consensus 479 k~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~ 515 (961)
.++++++....+....+..-.+.++.+|..++.+|..
T Consensus 95 ~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~ 131 (390)
T 1deq_A 95 ELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIE 131 (390)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 53
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.40 E-value=3.5 Score=36.53 Aligned_cols=49 Identities=6% Similarity=0.219 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 470 KLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQ 518 (961)
Q Consensus 470 kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~lee 518 (961)
++..+..+.....+++..++.+..........++..+..+..+|..++.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~ 55 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTED 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443333333333333333333333333333
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=87.95 E-value=6.8 Score=36.01 Aligned_cols=38 Identities=8% Similarity=-0.039 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 613 HVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENI 650 (961)
Q Consensus 613 ~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~ 650 (961)
.++..+.++..+......++.++..++.++..|+.++.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666655
No 55
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.71 E-value=3.4 Score=37.23 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 480 RLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCI 558 (961)
Q Consensus 480 ~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~i 558 (961)
-|+.+|..+...+.++.-++.++..-......+.+.=-..-...+.++..++..++.+--...++..+.+.+++++..+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555444444444444444444433333344444444444444444444444444444444444333
No 56
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=87.69 E-value=3.2 Score=37.07 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 476 MEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNL 541 (961)
Q Consensus 476 sEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqel 541 (961)
++...+..++..++.+|..|+..|..++..+.+...+-.++...+..+...+...-.+|.++.+.+
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344455566666666666666666666666666666655555544444444444334444333333
No 57
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.72 E-value=22 Score=33.69 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 483 ERVRELAEQNVSLQREVSTFNEREAESRSM----ITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCI 558 (961)
Q Consensus 483 ERlreLeEknvsLqrEIe~leeKi~El~~k----Ie~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~i 558 (961)
.+.+.|..++.+|..|++....|....... +..+...+..+....+.+...|-.+++.=+.+.-....+...+..+
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 466777777777777777777776665443 4444444444444444444444444444444443333333333333
Q ss_pred HHHHH
Q 002131 559 KRNFE 563 (961)
Q Consensus 559 R~e~e 563 (961)
...+.
T Consensus 83 E~k~n 87 (111)
T 2v66_B 83 EQRLN 87 (111)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 58
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=86.66 E-value=6.9 Score=34.44 Aligned_cols=62 Identities=24% Similarity=0.261 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 480 RLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNL 541 (961)
Q Consensus 480 ~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqel 541 (961)
.+..++..++.+|..|++.|..++..+.+...+-.++...+..+...+...-.+|.++.+.+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34566777777777777777777777766666666665555544444444444444443333
No 59
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.39 E-value=12 Score=42.04 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 568 ECKDLQKSITRLLRTCSEQEKTI 590 (961)
Q Consensus 568 ei~eleKeIa~Lq~~Ik~lEKtI 590 (961)
++..|+..|..+...|+++|.-|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 60
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.83 E-value=9.9 Score=35.87 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 480 RLRERVRELAEQNVSLQREVSTFNEREAE 508 (961)
Q Consensus 480 ~LrERlreLeEknvsLqrEIe~leeKi~E 508 (961)
-|..+|...++....-+.++..+++.+..
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 61
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.95 E-value=1.7 Score=42.38 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 525 RRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKD-LQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 525 selEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~e-leKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
..+..+..++..+...+.+-+.....++.....+..+++++-..+++ +++=++..+......++....|+..+
T Consensus 39 ~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql 112 (135)
T 2e7s_A 39 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQL 112 (135)
T ss_dssp HHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444332 23333333333333333333333333
No 62
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=84.67 E-value=19 Score=34.09 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 524 TRRAEQYTEENGDLRQNLSELGEKFRAA 551 (961)
Q Consensus 524 tselEeleeELeeleqeleEl~ee~qea 551 (961)
...+..+...+.+.+..+.+++..|..+
T Consensus 44 k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 44 SHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444333
No 63
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.80 E-value=5.2 Score=39.06 Aligned_cols=87 Identities=13% Similarity=0.094 Sum_probs=62.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchh
Q 002131 856 QMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMW-EEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQI 934 (961)
Q Consensus 856 q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~-ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqI 934 (961)
.+...+..+..++.++.+....-...+.....+..|++.+. .=|.+..+.+...+.+-..+..+.+.|++.+..+++.|
T Consensus 40 ~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 40 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp HTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444446777777787777777777778888888888774 45777777788889999999999999999999999999
Q ss_pred HHhhhhcC
Q 002131 935 TILKDTIG 942 (961)
Q Consensus 935 sil~D~I~ 942 (961)
..+++.+.
T Consensus 120 ~~lq~QL~ 127 (135)
T 2e7s_A 120 DTLTLQLK 127 (135)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99988765
No 64
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=82.68 E-value=36 Score=39.32 Aligned_cols=61 Identities=10% Similarity=0.074 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 530 YTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTI 590 (961)
Q Consensus 530 leeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtI 590 (961)
++..|++++..++++......+..-+..|+..++..+..+...+..|......++.+...|
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555554554444444444433
No 65
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=82.36 E-value=21 Score=34.02 Aligned_cols=13 Identities=23% Similarity=0.435 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 002131 549 RAAEADLYCIKRN 561 (961)
Q Consensus 549 qeaeEeld~iR~e 561 (961)
+.+.+++..+|++
T Consensus 88 q~a~ae~erlr~~ 100 (121)
T 3mq7_A 88 QDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3333333333333
No 66
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=82.26 E-value=23 Score=39.74 Aligned_cols=120 Identities=12% Similarity=0.189 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHhhhcchhh
Q 002131 532 EENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT----IAGLRDGFSDQIEKKPAL 607 (961)
Q Consensus 532 eELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt----Ie~LrqEL~eEleke~~v 607 (961)
..+.+..+.+.++...|+.+-+++.....++..+..-+.....-|...+.+|..+++- +.+.+.+ ....+ +
T Consensus 126 ~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~---~~~~e--~ 200 (373)
T 3hhm_B 126 KKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKRE---GNEKE--I 200 (373)
T ss_dssp C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---TCCSH--H
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---cChHH--H
Confidence 3344444555555556666666666666666666666777777788888888777763 3222221 11222 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002131 608 DKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRL 656 (961)
Q Consensus 608 ee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRL 656 (961)
..+..+-+.++..+..+..-..+|.++|........++..+++.+.-.|
T Consensus 201 ~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 201 QRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 4455556666666666666666666666666666666666666555444
No 67
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=82.06 E-value=25 Score=32.87 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 564 EKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 564 Eleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
.+-++..++.|.++..+....+.+..+..|+..+
T Consensus 5 ~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~ 38 (107)
T 2no2_A 5 DLLRKNAEVTKQVSMARQAQVDLEREKKELEDSL 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666555
No 68
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=81.86 E-value=13 Score=33.33 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 497 REVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEK 565 (961)
Q Consensus 497 rEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEl 565 (961)
.+-+.+..++.++..+-..++.++..++..++.-+.+-..++.++..+.+.++..-.++..+|..+..+
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 344556667777777777777777777777776666666666666666666666666666666655543
No 69
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=81.54 E-value=15 Score=32.38 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 501 TFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEE 564 (961)
Q Consensus 501 ~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eE 564 (961)
.+..++.++..+-..++.++..++.+++.-+.+-..++.++..+.+.++..-.++..+|..+..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666666666666666555555443
No 70
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=81.13 E-value=2.6 Score=49.75 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhc
Q 002131 672 KELWTRICCLQNQ 684 (961)
Q Consensus 672 ~El~~~I~~lq~q 684 (961)
+-|+..+..|+.+
T Consensus 514 ~~lq~qL~~L~~e 526 (575)
T 2i1j_A 514 ERLHNQLKALKQD 526 (575)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555555
No 71
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=81.06 E-value=10 Score=34.84 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 560 RNFEEKEMECKDLQKSITRLLRTC 583 (961)
Q Consensus 560 ~e~eEleeei~eleKeIa~Lq~~I 583 (961)
..|.........++.++..|..++
T Consensus 54 ~DF~aERadREkl~~eKe~L~~ql 77 (94)
T 3jsv_C 54 ADFQAERHAREKLVEKKEYLQEQL 77 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333333
No 72
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=80.89 E-value=2.1 Score=50.48 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 507 AESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQ 586 (961)
Q Consensus 507 ~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~l 586 (961)
.++.....+++..+..++.+...+..+|...+.....+.++...+ +.+-..+..+..+++..+.+|...-...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~-------~~e~~~l~~~~~~~e~~~~~l~~~~~~~ 403 (575)
T 2i1j_A 331 ERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQL-------QAAKEELEQRQNELQAMMQRLEETKNME 403 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444445555555555555555555555555555444444444 4455556666666666666666666666
Q ss_pred HHHHHHHhhhh
Q 002131 587 EKTIAGLRDGF 597 (961)
Q Consensus 587 EKtIe~LrqEL 597 (961)
..+...|.+++
T Consensus 404 ~~e~~~l~~~~ 414 (575)
T 2i1j_A 404 AAERQKLEDEI 414 (575)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 66666665555
No 73
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.74 E-value=30 Score=38.88 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 002131 567 MECKDLQKSITRLLR 581 (961)
Q Consensus 567 eei~eleKeIa~Lq~ 581 (961)
....+++++-+.|..
T Consensus 411 ~~~~~~~~~~~~~~~ 425 (471)
T 3mq9_A 411 KGFQDVEAQAATANH 425 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhcch
Confidence 333333333333333
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.24 E-value=38 Score=32.28 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002131 619 REQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNG 660 (961)
Q Consensus 619 ~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ 660 (961)
..+..|+++...|.++|+....+++.||.++..+.-++...+
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 345566666777888888888888999999988888887765
No 75
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=79.56 E-value=14 Score=35.35 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 471 LEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENG 535 (961)
Q Consensus 471 I~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELe 535 (961)
|..+..++..|+.++..+ ....++.|..+..++..+...+++-......+..+.+.++.+++
T Consensus 17 Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 17 IERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444 33344444445555555444444444444444444444444433
No 76
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=78.78 E-value=54 Score=37.72 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTIA 591 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe 591 (961)
+..+...-.+|..|++.|..+...|+.||.-|.
T Consensus 124 K~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 124 KQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334455555555555555555555533
No 77
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=78.57 E-value=26 Score=32.03 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGL 593 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~L 593 (961)
-..|..+..++..+...|..+...+.+++-.+..|
T Consensus 12 i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 12 LGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666665554444
No 78
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.94 E-value=53 Score=36.90 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=5.7
Q ss_pred hhcccccCCCChh
Q 002131 381 HETFLHDTGFDVP 393 (961)
Q Consensus 381 ~~~~~~~~~~~~~ 393 (961)
+.-+....++.+|
T Consensus 304 q~~~~~~~~~~~p 316 (471)
T 3mq9_A 304 LEAVNKDKPLGAV 316 (471)
T ss_dssp HHHHHHHSCCCSB
T ss_pred HHHHHhcCCCCCC
Confidence 3344444444433
No 79
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=76.84 E-value=44 Score=30.40 Aligned_cols=31 Identities=32% Similarity=0.228 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 500 STFNEREAESRSMITHSEQQLKDLTRRAEQY 530 (961)
Q Consensus 500 e~leeKi~El~~kIe~leeqIe~ltselEel 530 (961)
..+..++...-+++..|+++...++.++..+
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555444433
No 80
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=75.88 E-value=47 Score=30.30 Aligned_cols=89 Identities=16% Similarity=0.075 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 499 VSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITR 578 (961)
Q Consensus 499 Ie~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~ 578 (961)
++.+++-+..-+-.-+.+-.|.+.++.-+..++.+.+.-.+-+.+++.+++.+=.-++.-+.---+++..+.+++|+-+.
T Consensus 6 La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKDkAi 85 (101)
T 1d7m_A 6 LAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAI 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 33333333333334444445555555555555556666566666666665555444444444444555666666666666
Q ss_pred HHHHHHHHH
Q 002131 579 LLRTCSEQE 587 (961)
Q Consensus 579 Lq~~Ik~lE 587 (961)
|.-.+.+.-
T Consensus 86 LELkLaE~~ 94 (101)
T 1d7m_A 86 LELKLAEAI 94 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 655554443
No 81
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.78 E-value=21 Score=33.31 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTI 590 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtI 590 (961)
++++.++-+++..+...+..|+.++..++..|
T Consensus 50 ~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 50 RRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444333
No 82
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=74.72 E-value=53 Score=30.35 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 495 LQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQK 574 (961)
Q Consensus 495 LqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleK 574 (961)
+...|+..-..+..+..++.++..-+......+..-.+.+..--..+.-.-..++...+-|+..++.+.+.-++.++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aa 83 (114)
T 2xzr_A 4 IEDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIED 83 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44555666666666677777776666666666666666666555555555555555656666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002131 575 SITRLLRTCSEQEKTIAGLR 594 (961)
Q Consensus 575 eIa~Lq~~Ik~lEKtIe~Lr 594 (961)
+++.|-..+--++.+++.+.
T Consensus 84 qsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 84 KIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 66666666666666655543
No 83
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=74.59 E-value=97 Score=35.78 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Q 002131 518 QQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT------IA 591 (961)
Q Consensus 518 eqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt------Ie 591 (961)
+.+.....++..+...+..+...++....+.+.+...+....++...+++.+..+.+.|+.-+....+.+.. +.
T Consensus 356 QRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~aIKDAVkfTA 435 (602)
T 1cii_A 356 QRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTT 435 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444444444444444444444555555555545555555555555555555555444433322 66
Q ss_pred HHhhhhhHhhhcc
Q 002131 592 GLRDGFSDQIEKK 604 (961)
Q Consensus 592 ~LrqEL~eEleke 604 (961)
+.-+++.+.+|..
T Consensus 436 dFykkIsEkyGeK 448 (602)
T 1cii_A 436 EFLKSVSEKYGAK 448 (602)
T ss_dssp HHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666655
No 84
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=74.29 E-value=20 Score=33.06 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002131 484 RVRELAEQNVSLQREVSTFNE 504 (961)
Q Consensus 484 RlreLeEknvsLqrEIe~lee 504 (961)
++...++-...-+..|..+.+
T Consensus 10 ~L~~aEeaL~~kq~~id~lke 30 (94)
T 3jsv_C 10 QLQQAEEALVAKQELIDKLKE 30 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333
No 85
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=73.50 E-value=81 Score=31.86 Aligned_cols=120 Identities=8% Similarity=0.121 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------H
Q 002131 478 EQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEE-----------------------N 534 (961)
Q Consensus 478 kk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeE-----------------------L 534 (961)
+..+-.+++++..+.....++-..+-+....+...|.-....++.....+.-.+++ +
T Consensus 12 ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~ 91 (170)
T 3l4q_C 12 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEM 91 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHH
Confidence 33444455555555555555555555555555555555555555544444444443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 535 GDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 535 eeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
..+..+...++.+.....+....+...+.........++++|..++-.+-.+.+.....-.-|
T Consensus 92 ~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL 154 (170)
T 3l4q_C 92 QRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWL 154 (170)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 335566667777777777777777777777777777788888888777777777755544444
No 86
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=73.41 E-value=13 Score=36.62 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 002131 445 LEREKVELQSGLEKELDRRS-SDWSFKLEKYQMEEQRLRERVRELAEQN------------VSLQREVSTFNEREAESRS 511 (961)
Q Consensus 445 LEkQaekAK~yLEKEL~rrq-nE~~~kI~~~EsEkk~LrERlreLeEkn------------vsLqrEIe~leeKi~El~~ 511 (961)
|+..+...+.+++..++... .....++..++.+++-|.+...-++... ..+.+.+....+.+..+..
T Consensus 8 le~~~~e~~~~l~~~~~~~~~~~~~a~~~~le~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea 87 (146)
T 2xnx_M 8 LEKELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKL 87 (146)
T ss_dssp TTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHH
Confidence 33344444444444444333 2244445555555555555444444443 5666666666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002131 512 MITHSEQQLKDLTRRAEQY 530 (961)
Q Consensus 512 kIe~leeqIe~ltselEel 530 (961)
.+..++..+..++.+..++
T Consensus 88 ~la~l~~~~~~LeAE~aKL 106 (146)
T 2xnx_M 88 ELDQLSSEKEQLTIEKAKL 106 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 5555555544444443333
No 87
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=72.53 E-value=17 Score=32.52 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 495 LQREVSTFNEREAESRSMITHSEQQLKDL------TRRAEQYTEENGDLRQNLSELGEKFRAA 551 (961)
Q Consensus 495 LqrEIe~leeKi~El~~kIe~leeqIe~l------tselEeleeELeeleqeleEl~ee~qea 551 (961)
.+++++.+..+|..+..+|..++.++..- -..+..+..++..++..+.++-+++..+
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665555321 1234444455555555555555555433
No 88
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=71.03 E-value=39 Score=30.46 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGL 593 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~L 593 (961)
-..|..+..++..+...|..+..++.+++-.+..|
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555566666666665554433
No 89
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=70.75 E-value=48 Score=37.71 Aligned_cols=44 Identities=9% Similarity=0.006 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 610 YDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLL 653 (961)
Q Consensus 610 ~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~ 653 (961)
..+....|.+++.+|.........+|..++..+.++...+..|.
T Consensus 82 ~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~ 125 (409)
T 1m1j_C 82 LTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLK 125 (409)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455556666666655444444444444444444444444333
No 90
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=69.84 E-value=32 Score=32.15 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchh
Q 002131 870 DLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQI 934 (961)
Q Consensus 870 dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqI 934 (961)
+.....=++..++..|+.+.+.+.++..+.+...+.+..++-....|+..+..|+..|.-++.-|
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI 88 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEML 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444455555555555555555444444
No 91
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=69.69 E-value=31 Score=30.97 Aligned_cols=56 Identities=30% Similarity=0.403 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 452 LQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAE 508 (961)
Q Consensus 452 AK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~E 508 (961)
.+..++.||..+|. +..++......-.-...++++.+.+|..|..++..++.++.+
T Consensus 15 LQSALeaEIqAKQ~-i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 15 LQEALEEEVLTRQS-LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556655553 334444455555555556666666666666665555555554
No 92
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.71 E-value=1.9e+02 Score=34.23 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 536 DLRQNLSELGEKFRA-------AEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 536 eleqeleEl~ee~qe-------aeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEK 588 (961)
.+.+.++.+...|.. +.+-+..+-.......+.+.++.+.++..+..+.....
T Consensus 435 ~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~ 494 (592)
T 1f5n_A 435 LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV 494 (592)
T ss_dssp HHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544 23555555555555655565544444444444433333
No 93
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.01 E-value=72 Score=29.05 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
....+.+...+..+++.+..++..+..++..
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444443
No 94
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=67.36 E-value=1.9e+02 Score=33.71 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 002131 576 ITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 576 Ia~Lq~~Ik~lEKtIe~LrqEL 597 (961)
|...+..++.+.+-|+..++.+
T Consensus 191 i~~yr~k~~aL~~aIe~Er~~~ 212 (526)
T 3iyk_A 191 VKEYRDKIDALKNAIEVERDGM 212 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 5666666666666665555553
No 95
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=67.33 E-value=82 Score=29.42 Aligned_cols=11 Identities=9% Similarity=-0.009 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 002131 508 ESRSMITHSEQ 518 (961)
Q Consensus 508 El~~kIe~lee 518 (961)
++...+..++.
T Consensus 26 e~e~~k~eL~~ 36 (107)
T 2no2_A 26 DLEREKKELED 36 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 96
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=67.12 E-value=17 Score=29.94 Aligned_cols=44 Identities=11% Similarity=0.235 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhH
Q 002131 892 RDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQIT 935 (961)
Q Consensus 892 rd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIs 935 (961)
++.+..++...+..+..++..+..+.+.+....+.|..+.++|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 14 VEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444443
No 97
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=66.91 E-value=1.3e+02 Score=34.67 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 553 ADLYCIKRNFEEKEMECKDLQKSITRLLRTC 583 (961)
Q Consensus 553 Eeld~iR~e~eEleeei~eleKeIa~Lq~~I 583 (961)
..+..+|..++.+..+++.||..|..-...|
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~~q~~~C 162 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDIKIRAC 162 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666666666666666555544
No 98
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=66.51 E-value=85 Score=35.67 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 002131 574 KSITRLLRTCSEQEKTIAGLRDG 596 (961)
Q Consensus 574 KeIa~Lq~~Ik~lEKtIe~LrqE 596 (961)
..|..|+..+..++..|..|.+.
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~ 127 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQK 127 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333333333333333333
No 99
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=66.19 E-value=23 Score=38.65 Aligned_cols=117 Identities=10% Similarity=0.126 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhH
Q 002131 524 TRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT----IAGLRDGFSD 599 (961)
Q Consensus 524 tselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt----Ie~LrqEL~e 599 (961)
...++.+-..|.++.+.+.++..+|+..-+++.....++..+...+.....-|+-.+.+|.-+++- |+..+.+-
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~af~~~~~~f~~q~~~qe~~~~~~~~~~~~~~-- 87 (302)
T 2y3a_B 10 EDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKEYLERFRREG-- 87 (302)
T ss_dssp -----------CCCSSCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC------C--
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcC--
Confidence 446777778888888888888899999999999999999999999999999999999999888763 22222221
Q ss_pred hhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 600 QIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSL 645 (961)
Q Consensus 600 Eleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsL 645 (961)
-..+ ...+..+-+.++..+..|......+.++|.-.+.++-.+
T Consensus 88 -~~~e--~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~i 130 (302)
T 2y3a_B 88 -NEKE--MQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREI 130 (302)
T ss_dssp -TTTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHH--HHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhH
Confidence 0112 333444445555566666666665555555544444444
No 100
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=65.33 E-value=2.2e+02 Score=33.70 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 002131 641 EVDSLRHENISLLNR 655 (961)
Q Consensus 641 EIEsLReEl~~L~rR 655 (961)
+.+.|..++..|.++
T Consensus 568 ~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 568 ESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333344444443333
No 101
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=65.20 E-value=41 Score=35.66 Aligned_cols=13 Identities=8% Similarity=0.110 Sum_probs=7.8
Q ss_pred CCChhHHHHHHhc
Q 002131 389 GFDVPAMIQTIRI 401 (961)
Q Consensus 389 ~~~~~~~~~~i~~ 401 (961)
+-..|.|||+..+
T Consensus 70 ~~~~pSLFQGFeA 82 (242)
T 3uux_B 70 SKKETSLFQGFKS 82 (242)
T ss_dssp --CCCCHHHHHHH
T ss_pred CCCCcchhhcccc
Confidence 4456888988543
No 102
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=65.15 E-value=53 Score=29.35 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 534 NGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSE 585 (961)
Q Consensus 534 LeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~ 585 (961)
+..+...+..+..+...++.++...-.+|.++-+--..+..+|+.++.-+..
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 3334444444455555556666666667777766667777777777766543
No 103
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=64.61 E-value=50 Score=31.09 Aligned_cols=39 Identities=5% Similarity=0.084 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSL 645 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsL 645 (961)
.+.++++++.+...+..++.....++.++..+...+.++
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555444443
No 104
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=64.06 E-value=2.2e+02 Score=33.22 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=7.6
Q ss_pred hhhhhhcccccccc
Q 002131 168 KILDRYIDGEQHQE 181 (961)
Q Consensus 168 ~v~d~yidge~~~~ 181 (961)
-|.|-++||-|...
T Consensus 184 RV~Dvv~DGvQkva 197 (551)
T 2b5u_A 184 RVVDDVKDERQNIS 197 (551)
T ss_dssp EEEEEESSSCEEEE
T ss_pred EeeeeeccCcEEEE
Confidence 45566666655433
No 105
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=63.20 E-value=1.4e+02 Score=30.58 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 002131 576 ITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 576 Ia~Lq~~Ik~lEKtIe~LrqEL 597 (961)
..+|+..+.+++..-..+.+.|
T Consensus 130 ~~~L~~a~~e~eeeS~~l~~~F 151 (192)
T 2p22_C 130 KKKLEQNTKKLDEESSQLETTT 151 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555
No 106
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=63.03 E-value=45 Score=31.85 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHH
Q 002131 439 ESRTRRLEREKVELQSGLEKELDRRS---SDWSFKLEKYQMEEQRLR 482 (961)
Q Consensus 439 e~QLepLEkQaekAK~yLEKEL~rrq---nE~~~kI~~~EsEkk~Lr 482 (961)
+..|+.|..+.+.++..+|.-....+ .++..+|..++.+..--+
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544433333 444444444444443333
No 107
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=62.32 E-value=2.3e+02 Score=33.58 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=21.5
Q ss_pred hhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 594 RDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIES 637 (961)
Q Consensus 594 rqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEs 637 (961)
+|.+ +.+|+- . +..++.+|.-++.|-+..-++|++|..
T Consensus 107 rQq~-a~iG~p--~---~~~Ld~lQ~w~e~lae~l~q~rqql~~ 144 (575)
T 1bf5_A 107 RQQS-ACIGGP--P---NACLDQLQNWFTIVAESLQQVRQQLKK 144 (575)
T ss_dssp HHHH-HHTTSS--C---CCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHh-hcCCCC--c---cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556 677766 2 344556666666665555555554443
No 108
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=61.95 E-value=2.7e+02 Score=33.48 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=12.5
Q ss_pred ChhHHHHHHh--cChHHHHHHHHHH
Q 002131 391 DVPAMIQTIR--ILTEEKMSLALEV 413 (961)
Q Consensus 391 ~~~~~~~~i~--~~~edRR~i~EEa 413 (961)
+.|..++.+. ..|++=+.-++++
T Consensus 406 ~LP~~l~~l~~~~lP~~l~~~~~~i 430 (704)
T 2xs1_A 406 NLPAAIEDVSGDTVPQSILTKSRSV 430 (704)
T ss_dssp TTTHHHHCSSTTSCCHHHHHHHHHH
T ss_pred CChHHHHHHhcCCCCHHHHHHHHHH
Confidence 3466666664 3666555444444
No 109
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=60.76 E-value=66 Score=28.85 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 516 SEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAA 551 (961)
Q Consensus 516 leeqIe~ltselEeleeELeeleqeleEl~ee~qea 551 (961)
+-.+++.+..++..++..++.+.-.+..+..+....
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444333333333333333
No 110
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=60.52 E-value=93 Score=27.74 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 524 TRRAEQYTEENGDLRQNLSELGEKFRAAEADL 555 (961)
Q Consensus 524 tselEeleeELeeleqeleEl~ee~qeaeEel 555 (961)
...+.....+|+.+...-+++....+...+.+
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi 48 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMV 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444555555555555554444443333
No 111
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=60.39 E-value=2e+02 Score=33.43 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 524 TRRAEQYTEENGDLRQNLSELGEKFRAA 551 (961)
Q Consensus 524 tselEeleeELeeleqeleEl~ee~qea 551 (961)
+.+-+.+++..+.++...+...++|+..
T Consensus 47 ~aeNeaikkrNa~aka~Ye~~l~kY~~d 74 (497)
T 3iox_A 47 TAENTAIKKRNADAKADYEAKLAKYQAD 74 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333
No 112
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=59.49 E-value=95 Score=27.50 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 533 ENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCS 584 (961)
Q Consensus 533 ELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik 584 (961)
++..+...+..+..+...++.++...-.++.++-+--..++.+|+.++.-+.
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3444445555555556666666666666777776666777777777765543
No 113
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=58.49 E-value=2e+02 Score=30.82 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=11.5
Q ss_pred hhhHhhhhHHHHHHHHHHHh
Q 002131 664 AALTMKLDKELWTRICCLQN 683 (961)
Q Consensus 664 ~~~~~kl~~El~~~I~~lq~ 683 (961)
.+.+...++.|...+.+++.
T Consensus 226 ~p~~e~~~~~l~~~~e~l~~ 245 (273)
T 3s84_A 226 EPYGENFNKALVQQMEQLRQ 245 (273)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666
No 114
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.31 E-value=17 Score=41.12 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 531 TEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLL 580 (961)
Q Consensus 531 eeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq 580 (961)
+.++..+++...++......++.++..+...+...+.....+++.|..++
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333333333333333444444444444444444455555555555443
No 115
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=57.91 E-value=1.9e+02 Score=31.88 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCchhhhHhhhhHHH--HHHHHH
Q 002131 617 LQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKG-----NGKESAALTMKLDKEL--WTRICC 680 (961)
Q Consensus 617 lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~-----~~ne~~~~~~kl~~El--~~~I~~ 680 (961)
+...+..+......-..-|+.+.-.=..+-.++..+..-+.. ..++...+...|+... |..|..
T Consensus 255 ~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~~~~~~i~~~~~~~i~~~L~~a~~~W~~l~~ 325 (346)
T 2nrj_A 255 AYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQKADQNKFKFLKPNLNAAKDSWKTLRT 325 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333333333333333334444444444444555555555554 3344444444444333 555544
No 116
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=57.34 E-value=1.2e+02 Score=34.59 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 430 ELRMVKADLESRTRRLEREKVELQSGL 456 (961)
Q Consensus 430 nL~Ri~~ELe~QLepLEkQaekAK~yL 456 (961)
+...-+.+|+..|+.++.....++.|+
T Consensus 35 ~V~~~l~~L~~~l~~isn~Ts~~~~~v 61 (411)
T 3ghg_C 35 KVDKDLQSLEDILHQVENKTSEVKQLI 61 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 334467788888888888888888887
No 117
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=56.87 E-value=1.5e+02 Score=29.03 Aligned_cols=17 Identities=24% Similarity=0.026 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002131 610 YDKHVALLQREQMRLTG 626 (961)
Q Consensus 610 ~ek~Ie~lq~ElerLt~ 626 (961)
+++...+.+.-++.|+.
T Consensus 133 I~knka~~~a~~~~~~~ 149 (157)
T 2qih_A 133 IAKNKAEADASFETLTK 149 (157)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHhHHHHHhh
Confidence 55556666666666654
No 118
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=56.75 E-value=3.4 Score=46.19 Aligned_cols=29 Identities=24% Similarity=0.087 Sum_probs=16.1
Q ss_pred hHHHHHHhcChHHHHHHHHHHhhhhHHHH
Q 002131 393 PAMIQTIRILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 393 ~~~~~~i~~~~edRR~i~EEaaGi~Kyk~ 421 (961)
+.....|...|.+||.+|++++|+..|+-
T Consensus 152 g~~~~l~~~~p~eRr~~ld~~~g~~~~~~ 180 (430)
T 1w1w_A 152 GDVEQIAAQSPVELSRMFEEVSGSIQYKK 180 (430)
T ss_dssp TCTTHHHHSCHHHHHHTC-----------
T ss_pred HhHHHHHhCCHHHHHHHHHHHhCchhHHH
Confidence 55678899999999999999999998764
No 119
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=56.56 E-value=2.3e+02 Score=33.00 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002131 537 LRQNLSELGEKFRAAEADL 555 (961)
Q Consensus 537 leqeleEl~ee~qeaeEel 555 (961)
.+.+-..++.+...++..+
T Consensus 46 i~aeNeaikkrNa~aka~Y 64 (497)
T 3iox_A 46 LTAENTAIKKRNADAKADY 64 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 120
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=55.71 E-value=62 Score=37.63 Aligned_cols=33 Identities=6% Similarity=0.139 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 483 ERVRELAEQNVSLQREVSTFNEREAESRSMITH 515 (961)
Q Consensus 483 ERlreLeEknvsLqrEIe~leeKi~El~~kIe~ 515 (961)
+++-.|.++..+++.+++.++++.+.+...|..
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555443
No 121
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=55.68 E-value=93 Score=29.23 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 485 VRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLK 521 (961)
Q Consensus 485 lreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe 521 (961)
+..|.+....|+.++..+..++..+...+..++.-++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e 39 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEK 39 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555655555555555555555543333
No 122
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=55.51 E-value=87 Score=27.74 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 612 KHVALLQREQMRLTGVEMSLRREIESYRVEVD 643 (961)
Q Consensus 612 k~Ie~lq~ElerLt~~eE~LReELEsle~EIE 643 (961)
..++.+..+...|-.++..|.-||..++.=++
T Consensus 47 ~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 47 EEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 34455556666666667777777666655443
No 123
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=55.43 E-value=1.7e+02 Score=29.11 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhhcc
Q 002131 577 TRLLRTCSEQEKTIAGLRDGFSDQIEKK 604 (961)
Q Consensus 577 a~Lq~~Ik~lEKtIe~LrqEL~eEleke 604 (961)
..+...+..+..-|...+.-+...++.+
T Consensus 111 ~~F~~~~~e~~~Wl~ek~~~l~~~~g~d 138 (218)
T 3edu_A 111 HRYFYTGAEILGLIDEKHRELPEDVGLD 138 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccCCC
Confidence 3355555555555555555554445444
No 124
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=54.88 E-value=38 Score=30.01 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 002131 608 DKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGKE 662 (961)
Q Consensus 608 ee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ne 662 (961)
..++.+|.++.+.+.-...-.+.|-..|..-..+|+.|+.++..+..++++....
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456677777777777777777888888888888888888888888888776643
No 125
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=54.80 E-value=26 Score=30.79 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=24.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 002131 850 LKDLELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDM 894 (961)
Q Consensus 850 ~k~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~ 894 (961)
+.+|+..+.++++.|..++..|++.+++|..+...+..|..++|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555555555555554
No 126
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=54.72 E-value=2.2e+02 Score=30.35 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=23.5
Q ss_pred HHHhhhcCCchhhhHhhhhHHHHHHHHHHHhccccCCCCC
Q 002131 653 LNRLKGNGKESAALTMKLDKELWTRICCLQNQGISMLNES 692 (961)
Q Consensus 653 ~rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q~lS~~d~n 692 (961)
..+|.+.-++....+..+...|..++..++. .+.|+...
T Consensus 193 r~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~-~~~p~~e~ 231 (273)
T 3s84_A 193 RGNLRGNTEGLQKSLAELGGHLDQQVEEFRR-RVEPYGEN 231 (273)
T ss_dssp HHTSSSCHHHHHHHHHHHHHHHHHHHHHHHH-HHTTHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HhHhhHHH
Confidence 3344454445555566666777777888876 45555554
No 127
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=54.46 E-value=1.1e+02 Score=27.53 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 505 REAESRSMITHSEQQLKDLTRRAEQYTEE 533 (961)
Q Consensus 505 Ki~El~~kIe~leeqIe~ltselEeleeE 533 (961)
.++++..++.+++.+--+++..+...+++
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~E 55 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAE 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33333333333333333333333333333
No 128
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=54.38 E-value=81 Score=28.14 Aligned_cols=57 Identities=26% Similarity=0.387 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 002131 544 LGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQI 601 (961)
Q Consensus 544 l~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEl 601 (961)
+++.+..++.+++.++.=-.++..=..++..=|.+++.....+++.|+-+.... +++
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~-~EL 72 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD-EEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 444555555555555555555555555555555555555555555555555554 444
No 129
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=54.32 E-value=29 Score=30.73 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 503 NEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKF 548 (961)
Q Consensus 503 eeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~ 548 (961)
+.++.+++.++++.+.-|+.+...+.....+|+.+...+.-+.+++
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433333333
No 130
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=53.27 E-value=1.4e+02 Score=27.38 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcc
Q 002131 531 TEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKK 604 (961)
Q Consensus 531 eeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke 604 (961)
+..++.-+..-+++-.+.++.+..+..++.+..+-...+.+++..|...-+.+..-.=..-.|+.++ ...+++
T Consensus 10 e~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RL-sKtEKD 82 (101)
T 1d7m_A 10 ENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARL-AKTEKD 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hhhhhH
Confidence 3333333333334444444444444444555544444455555555444444442222244455555 444444
No 131
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=51.86 E-value=41 Score=34.48 Aligned_cols=74 Identities=18% Similarity=0.098 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHHhhhhc
Q 002131 868 QIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITILKDTI 941 (961)
Q Consensus 868 q~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil~D~I 941 (961)
+.++......|+.+-..+.-|+++++...++.+++++++..+++.....+..+.+..|.|...+.-++-|-.-|
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl~ 85 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNVR 85 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCcE
Confidence 44555555556666666666677777777777777777777777777777777777777766666666554433
No 132
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=50.94 E-value=74 Score=29.10 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 537 LRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRT 582 (961)
Q Consensus 537 leqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~ 582 (961)
+...+..+..++..++.++...-.++.++-+--..+..+|+.++.-
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkL 87 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKL 87 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555555555555555666666665543
No 133
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=50.65 E-value=3.9e+02 Score=31.88 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=21.7
Q ss_pred hhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 594 RDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIES 637 (961)
Q Consensus 594 rqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEs 637 (961)
+|.+ +.+|+- . +..++.+|.-++.|-+..-++|++|..
T Consensus 120 rQq~-a~iG~p--~---~~~LD~lQ~w~e~lae~l~q~rqql~~ 157 (596)
T 1bg1_A 120 RQQI-ACIGGP--P---NICLDRLENWITSLAESQLQTRQQIKK 157 (596)
T ss_dssp HHHH-HHTTCC--C---CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHh-hcCCCC--c---ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556 677766 2 344556666666665555555554443
No 134
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.78 E-value=1.4e+02 Score=26.74 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 556 YCIKRNFEEKEMECKDLQKSITRL 579 (961)
Q Consensus 556 d~iR~e~eEleeei~eleKeIa~L 579 (961)
..+|......+.++.+.++....|
T Consensus 34 s~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 135
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=49.39 E-value=65 Score=37.43 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 483 ERVRELAEQNVSLQREVSTFNEREAESRSMITH 515 (961)
Q Consensus 483 ERlreLeEknvsLqrEIe~leeKi~El~~kIe~ 515 (961)
+++-.|.++..+++.+++.+.++.+.+...|..
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666666555555543
No 136
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=48.27 E-value=1.2e+02 Score=26.91 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 002131 480 RLRERVRELA 489 (961)
Q Consensus 480 ~LrERlreLe 489 (961)
.|+.++++++
T Consensus 14 ~Le~~l~e~E 23 (86)
T 1x8y_A 14 AKEAKLRDLE 23 (86)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 137
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=48.06 E-value=1.5e+02 Score=26.36 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 531 TEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 531 eeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
-.+++++..+-.++.+-........+.+-..+.++-.+...+..++..++.....++.+|..+++++
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444555555555555555555555555555555555554444
No 138
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=47.94 E-value=62 Score=37.09 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 558 IKRNFEEKEMECKDLQKSITRLLRTCSEQE 587 (961)
Q Consensus 558 iR~e~eEleeei~eleKeIa~Lq~~Ik~lE 587 (961)
++.+..++..++..++.++..++..+..+=
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554433
No 139
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=47.92 E-value=3.3e+02 Score=30.37 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 533 ENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 533 ELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKt 589 (961)
++..+..+.+.++.+.++..+...++..++......+.+++++|+.++-.+-.+.+.
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~ 255 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKT 255 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 444455555555555566666666666666666666677777777777766555555
No 140
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=46.74 E-value=1.2e+02 Score=29.21 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002131 570 KDLQKSITRLLRTCSEQEKTIAGLRD 595 (961)
Q Consensus 570 ~eleKeIa~Lq~~Ik~lEKtIe~Lrq 595 (961)
.++.+.|..|+..|..+++.+..++.
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 33556666666666666666655443
No 141
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=46.16 E-value=2.5e+02 Score=28.35 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 002131 473 KYQMEEQRLRER 484 (961)
Q Consensus 473 ~~EsEkk~LrER 484 (961)
.++.++.-|+++
T Consensus 31 ~le~ek~~l~~~ 42 (169)
T 3k29_A 31 LLELEQEKLRER 42 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 142
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=45.88 E-value=34 Score=33.20 Aligned_cols=46 Identities=11% Similarity=0.214 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002131 552 EADLYCIKRNFEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 552 eEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
.+..+.+.+..+.+...+..+++.|..++.++...+..+..+.+..
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666667777777777777777777777666666555
No 143
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.64 E-value=95 Score=36.11 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhchhHHhhhhcCCC
Q 002131 909 LNSEVNVLKKKIEVLDEDLLLKEGQITILKDTIGSK 944 (961)
Q Consensus 909 ~k~Ev~~lkk~ie~Leedi~~kEgqIsil~D~I~~~ 944 (961)
+..++..++.+|..|++.+...+.++..+--.|-|-
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333444444444444444444444444444444443
No 144
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=45.61 E-value=34 Score=31.36 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 613 HVALLQREQMRLTGVEMSLRREIESYR 639 (961)
Q Consensus 613 ~Ie~lq~ElerLt~~eE~LReELEsle 639 (961)
.++.+-.+...|-.++..|.-||..++
T Consensus 59 e~~~ql~EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 59 QMQQQLNDYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555554443
No 145
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=44.90 E-value=1.2e+02 Score=26.92 Aligned_cols=24 Identities=8% Similarity=-0.008 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 521 KDLTRRAEQYTEENGDLRQNLSEL 544 (961)
Q Consensus 521 e~ltselEeleeELeeleqeleEl 544 (961)
..+..++..+..+|+.+...+.++
T Consensus 59 ~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 59 QKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444
No 146
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=44.40 E-value=91 Score=25.76 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 505 REAESRSMITHSEQQLKDLTRRAEQYT 531 (961)
Q Consensus 505 Ki~El~~kIe~leeqIe~ltselEele 531 (961)
++.++...+..|..++..|..++..++
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333
No 147
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=43.44 E-value=3.1e+02 Score=31.21 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhh----hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002131 832 LRCEVQNALDNLSCVTHKLKDLELQMLKKDE----SINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNM 907 (961)
Q Consensus 832 lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D----~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~ 907 (961)
|...++.+...-+++...++.+..-+.+..- +|+.....=+.+..++..|+..|......+..+... +.
T Consensus 43 L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~-------~~ 115 (411)
T 3ghg_C 43 LEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEI-------YN 115 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HH
Confidence 3333344444444444666777665554432 555544444445556666655555555555444432 22
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 002131 908 LLNSEVNVLKKKIEVLDED 926 (961)
Q Consensus 908 ~~k~Ev~~lkk~ie~Leed 926 (961)
.....|..|+..+..|...
T Consensus 116 ~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 116 SNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2233444444444444443
No 148
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=43.39 E-value=24 Score=37.70 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 611 DKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISL 652 (961)
Q Consensus 611 ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L 652 (961)
+.++..++.++..|....+.|...|..++.|+..|++++..+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666666666666666666666666666655544
No 149
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.33 E-value=60 Score=27.00 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 613 HVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHEN 649 (961)
Q Consensus 613 ~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl 649 (961)
.+..++.++..|+..-..|+.+|..++.++..|++.+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555556666666666666666665543
No 150
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=42.31 E-value=2.8e+02 Score=27.93 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 476 MEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQ 519 (961)
Q Consensus 476 sEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeq 519 (961)
.-.+..-+..+.|+.....|.+-.+.......+...++..+...
T Consensus 20 ~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~ 63 (169)
T 3k29_A 20 RAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQ 63 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455444444444444444444444444444433
No 151
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=42.21 E-value=37 Score=31.15 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=19.7
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhHHHHHHH-HHHHHh
Q 002131 820 AELATAVRGNDILRCEVQNALDNLSCVTHKL-KDLELQ 856 (961)
Q Consensus 820 ~elas~~~~~~~lr~Eiq~l~dels~~~~k~-k~LE~q 856 (961)
.++..++ |.||.|..++..+.+.++++. +++|.+
T Consensus 10 ~Rl~ELL---D~ir~Efe~~~~e~~~~k~q~~~eyE~k 44 (92)
T 3vp9_A 10 NKLNELL---DAIRQEFLQVSQEANTYRLQNQKDYDFK 44 (92)
T ss_dssp ----------CCTTTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH---HHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 3566667 777888888887877777443 577776
No 152
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=41.85 E-value=97 Score=34.22 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=19.1
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 002131 849 KLKDLELQMLKKDESINQLQIDLQDSAKELKIMKG 883 (961)
Q Consensus 849 k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g 883 (961)
....|...+..+...|..|+.+|+....+|..+.+
T Consensus 163 ~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~~~ 197 (346)
T 2nrj_A 163 NKELLQSILKNQGADVDADQKRLEEVLGSVNYYKQ 197 (346)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGGGC
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444666667677666666654443
No 153
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=41.45 E-value=3.1e+02 Score=28.15 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHH--HHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 002131 800 LTSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVT--HKLKDLELQMLKKDESINQLQIDLQDSAKE 877 (961)
Q Consensus 800 ~~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~--~k~k~LE~q~~K~~D~I~~lq~dlqe~~ke 877 (961)
++..|..+|.....+-+.|+ .-.+.+..+..++..+..+..--. .|..-+=-.++|.+.=+-.|=..+---+..
T Consensus 20 Li~~L~~kL~~L~~eqe~l~----ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvena 95 (190)
T 3thf_A 20 LIKHLNQKIVSLKREQQTIS----EECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESS 95 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455555555444444444 555566788888888887764333 444444445555555455555566666666
Q ss_pred HHHHhhhhhhHHHHHHHH---HHHHHHHHHHHHHhHHHH-----------------------HHHHHHHHHHHHHHhhhh
Q 002131 878 LKIMKGVLPKVSEERDMM---WEEVKQYSEKNMLLNSEV-----------------------NVLKKKIEVLDEDLLLKE 931 (961)
Q Consensus 878 is~~~g~L~~v~eerd~~---~ee~k~lke~~~~~k~Ev-----------------------~~lkk~ie~Leedi~~kE 931 (961)
|...-..-..|.+.++.+ .++++.+|+.++.=...| ..|--....|++.|...|
T Consensus 96 L~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~mKa~Ll~eqReLddkIklge 175 (190)
T 3thf_A 96 LETRQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKAKLIADARDLAVRIKGSE 175 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 655444445555555554 446777777666543333 233345567888899999
Q ss_pred chhHHhhhhcC
Q 002131 932 GQITILKDTIG 942 (961)
Q Consensus 932 gqIsil~D~I~ 942 (961)
.|+.-|.+++.
T Consensus 176 EQL~~L~~sL~ 186 (190)
T 3thf_A 176 EQLSSLSDALV 186 (190)
T ss_dssp HHHHHHTTC--
T ss_pred HHHHHHHHhhc
Confidence 99999988875
No 154
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=41.26 E-value=1.2e+02 Score=26.05 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=23.6
Q ss_pred HhhhhhhHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhchhHHh
Q 002131 881 MKGVLPKVSEERDMMW-EEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQITIL 937 (961)
Q Consensus 881 ~~g~L~~v~eerd~~~-ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil 937 (961)
|+.+...-..+.+..+ .++..+......-..++...+.+|..|+..|...+.+|..+
T Consensus 18 YE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 18 YESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333334444333 23344444444444444444444444444444444444433
No 155
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.05 E-value=63 Score=36.45 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=9.3
Q ss_pred ccCCCCChHHHHHHHHHH
Q 002131 686 ISMLNESTQLCSQLLEFI 703 (961)
Q Consensus 686 lS~~d~n~~lm~KLL~~I 703 (961)
|+|+++..-+++..++.|
T Consensus 156 yTM~g~~~Giipr~~~~l 173 (403)
T 4etp_A 156 FTMLNPGDGIIPSTISHI 173 (403)
T ss_dssp HHHHCTTTSHHHHHHHHH
T ss_pred eEeCCCCCccchhHHHHH
Confidence 445555444555555544
No 156
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=40.98 E-value=4.5e+02 Score=29.88 Aligned_cols=17 Identities=6% Similarity=-0.210 Sum_probs=14.7
Q ss_pred ChHHHHHHHHHHhhhhH
Q 002131 402 LTEEKMSLALEVSGLLQ 418 (961)
Q Consensus 402 ~~edRR~i~EEaaGi~K 418 (961)
.|..||.++...+|...
T Consensus 162 ~~~~rr~~LD~~~~~~~ 178 (517)
T 4ad8_A 162 SPANQRGLLDRRVTKEA 178 (517)
T ss_dssp SHHHHHHHHHTSSHHHH
T ss_pred CHHHHHHHHHHHhCcch
Confidence 89999999999988754
No 157
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=40.83 E-value=5.2e+02 Score=30.57 Aligned_cols=117 Identities=17% Similarity=0.265 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 493 VSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDL 572 (961)
Q Consensus 493 vsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~el 572 (961)
.+-+.+|=.+-.+...-+.+...+...++.+..+ +...|+++...+..+...|.+.+--. -..|....+-.+.|
T Consensus 654 nsqkd~ifalin~ea~kear~~a~~~nlkGI~~E---lsdKlENiNknLkDf~ksfde~KNGK---NkDFSKv~etlk~L 727 (876)
T 4dvy_P 654 NSQKDEIFALINKEANRDARAIAYTQNLKGIKRE---LSDKLEKISKDLKDFSKSFDEFKNGK---NKDFSKAEETLKAL 727 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHH
T ss_pred ccccchHHHHhhhhhhhHHHHHHhccchhhhhHH---HHHHHHHHHHHHHhhcccchhhhCCC---cccHHHHHHHHHHH
Confidence 3444555555555555555555554444444433 34455555555555544444432211 22333333344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHhhhc----chhhhhhHHHHHHHHH
Q 002131 573 QKSITRLLRTCSEQEKTIAGLRDGFSDQIEK----KPALDKYDKHVALLQR 619 (961)
Q Consensus 573 eKeIa~Lq~~Ik~lEKtIe~LrqEL~eElek----e~~vee~ek~Ie~lq~ 619 (961)
+..|..+-... +.-..|+.|.+-+ .++.+ + +..+.+-+..+..
T Consensus 728 ~~SvKDlgINq-Ev~dKIDNLNQAl-sefKnGKngD--FSkVeQAlsDLkn 774 (876)
T 4dvy_P 728 KGSVKDLGINP-EWISKVENLNAAL-NEFKNGKNKD--FSKVTQAKSDLEN 774 (876)
T ss_dssp HHHHHHSTTCH-HHHHHHHHHHHHH-HHTTC-------CHHHHHHHHHHHH
T ss_pred HhHHHHhccCH-HHHHHHHHHHHHH-HHhcCCCccC--chhhhhhhhHHHh
Confidence 55554443333 2333355666555 44333 3 4444444554444
No 158
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=40.59 E-value=3.7e+02 Score=29.53 Aligned_cols=152 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred cccccC---Cccccccccc-hhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHH
Q 002131 772 HEDVNL---SGKLNDQTAG-EIMRSELKAETLLTSLLREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVT 847 (961)
Q Consensus 772 ~~~sgg---lD~v~Y~~~~-d~lr~klkses~~~s~LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~ 847 (961)
++.+|. .+..+||.+. ..-++-+++-.+.....|..|..-+.++..++..+...++.-..+-.....+......+-
T Consensus 6 ~~~~~~~~~~~~~~~~~~~p~~~~l~l~Ea~~DSP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~ 85 (407)
T 4h8s_A 6 HHSSGVDLGTENLYFQSNAPAVDKLLLEEALQDSPQTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLS 85 (407)
T ss_dssp -------------CCCCCCCCCCCCCSTTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcchhhccCCCCCcCCccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHh---hhhhhhhHHHHHHHHHHHHHHHHHHhhh---------hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002131 848 HKLKDLELQ---MLKKDESINQLQIDLQDSAKELKIMKGV---------LPKVSEERDMMWEEVKQYSEKNMLLNSEVNV 915 (961)
Q Consensus 848 ~k~k~LE~q---~~K~~D~I~~lq~dlqe~~keis~~~g~---------L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~ 915 (961)
..+..+... +...++.+...-..+....+++..+... +.-|..=++..-..++.++++++..+..+..
T Consensus 86 ~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~ 165 (407)
T 4h8s_A 86 KQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLLHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDL 165 (407)
T ss_dssp HHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 002131 916 LKKKIEVL 923 (961)
Q Consensus 916 lkk~ie~L 923 (961)
+-.+...+
T Consensus 166 ~l~Ky~~~ 173 (407)
T 4h8s_A 166 SMAKYSRL 173 (407)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
No 159
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=40.39 E-value=1.7e+02 Score=24.95 Aligned_cols=11 Identities=0% Similarity=0.238 Sum_probs=5.4
Q ss_pred HHHHHHHHHhh
Q 002131 816 EQLQAELATAV 826 (961)
Q Consensus 816 eqlq~elas~~ 826 (961)
..++++|....
T Consensus 12 ~eiRaQYE~ia 22 (77)
T 3trt_A 12 RDVRQQYESVA 22 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555555
No 160
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=40.27 E-value=1.8e+02 Score=25.69 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHH
Q 002131 860 KDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWE-------EVKQYSEKNMLLNSEVNVLKKKIEV 922 (961)
Q Consensus 860 ~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~e-------e~k~lke~~~~~k~Ev~~lkk~ie~ 922 (961)
..+.|..+....+....+|..+...+..|...=..+.. ++..++.++..++..++.|+.....
T Consensus 34 d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~ 103 (118)
T 3uul_A 34 DVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESME 103 (118)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777778888888999998888888877666643 3445666666666666555554443
No 161
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.15 E-value=2e+02 Score=25.62 Aligned_cols=23 Identities=13% Similarity=0.330 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 565 KEMECKDLQKSITRLLRTCSEQE 587 (961)
Q Consensus 565 leeei~eleKeIa~Lq~~Ik~lE 587 (961)
+...+..+++.+..++..+..++
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 162
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=40.15 E-value=5.8e+02 Score=30.91 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=20.7
Q ss_pred hhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 594 RDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIES 637 (961)
Q Consensus 594 rqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEs 637 (961)
+|.+ +.+|+- . +..++.+|.-++.|-+..-++|++|..
T Consensus 242 rQq~-a~~G~p--~---~~~Ld~lQ~w~e~lae~l~q~rqql~~ 279 (683)
T 1yvl_A 242 RQQS-ACIGGP--P---NACLDQLQNWFTIVAESLQQVRQQLKK 279 (683)
T ss_dssp HHHH-HHHTCS--C---CCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHh-hcCCCC--c---hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556 667765 2 344555566665555555555554443
No 163
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=39.53 E-value=2.9e+02 Score=27.22 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=2.1
Q ss_pred HHHHHH
Q 002131 507 AESRSM 512 (961)
Q Consensus 507 ~El~~k 512 (961)
+++...
T Consensus 78 eeA~~~ 83 (152)
T 4fla_A 78 DEACLL 83 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 164
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=39.27 E-value=4e+02 Score=30.79 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 567 MECKDLQKSITRLLRTCSEQEKTIAGLRDG 596 (961)
Q Consensus 567 eei~eleKeIa~Lq~~Ik~lEKtIe~LrqE 596 (961)
..|..|...+..+...|..++..|..+++.
T Consensus 163 ~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 163 TNLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344444444444445555555554444444
No 165
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.16 E-value=77 Score=26.75 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 002131 888 VSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLL 928 (961)
Q Consensus 888 v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~ 928 (961)
-.+..+.+-.+++.+...+..+..++..|..++..|+..|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677778888888888888888888888888776654
No 166
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=39.09 E-value=2e+02 Score=30.59 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 442 TRRLEREKVELQSGL-----EKELDRRS-SDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESR 510 (961)
Q Consensus 442 LepLEkQaekAK~yL-----EKEL~rrq-nE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~ 510 (961)
+..|..+.+.+-..+ .|.+..-- .++..+|..+....+.+-+||..|++....|..+|...+.++..+.
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333 44444444 6677777777777777777777777766666666666666555443
No 167
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.02 E-value=88 Score=35.86 Aligned_cols=41 Identities=12% Similarity=0.025 Sum_probs=26.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhchhHHhhhhcCCCCC
Q 002131 906 NMLLNSEVNVLKKKIEVLDEDLLLKEGQITILKDTIGSKPF 946 (961)
Q Consensus 906 ~~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil~D~I~~~~~ 946 (961)
...+..++..++.++..|++.+...+.++..+--.|-|-|-
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~ 111 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITH 111 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34455666666666666666666666666666666666554
No 168
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=38.96 E-value=99 Score=29.92 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 466 DWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELG 545 (961)
Q Consensus 466 E~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ 545 (961)
+-..++...+.+++.|++|.+.+.++...+..|++.+..+..- .++.+..+++.. +..|..-.....+-+
T Consensus 13 EsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~---~~d~L~lQ~esm-------eaalkmEr~~~~eEK 82 (130)
T 3cl3_D 13 ESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSV---QVDQLRMQGQSV-------EAALRMERQAASEEK 82 (130)
T ss_dssp --------------------------------------CTTTH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3456788888999999999999999999998888775544332 233343443333 333333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002131 546 EKFRAAEADLYCIKRNFEE 564 (961)
Q Consensus 546 ee~qeaeEeld~iR~e~eE 564 (961)
.++..++..+.++=.+|.+
T Consensus 83 rkLAqLQ~AY~~LfqeYd~ 101 (130)
T 3cl3_D 83 RKLAQLQVAYHQLFQEYDN 101 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444443
No 169
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=38.90 E-value=77 Score=35.88 Aligned_cols=29 Identities=10% Similarity=0.013 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 558 IKRNFEEKEMECKDLQKSITRLLRTCSEQ 586 (961)
Q Consensus 558 iR~e~eEleeei~eleKeIa~Lq~~Ik~l 586 (961)
++.+...+..+++.++.++..++..+...
T Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 69 LIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555443
No 170
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=38.18 E-value=49 Score=37.52 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITR 578 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~ 578 (961)
++.+.+.+....++++.|..
T Consensus 37 ~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 37 KEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444433
No 171
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.17 E-value=1e+02 Score=35.72 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=21.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhchhHHhhhhcCCCC
Q 002131 907 MLLNSEVNVLKKKIEVLDEDLLLKEGQITILKDTIGSKP 945 (961)
Q Consensus 907 ~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil~D~I~~~~ 945 (961)
..+..++..++.+|..|++.+...+.++..+--.|-|-|
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~ 112 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344555555566666666665555555555555555443
No 172
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=37.83 E-value=1.5e+02 Score=26.10 Aligned_cols=29 Identities=28% Similarity=0.157 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002131 633 REIESYRVEVDSLRHENISLLNRLKGNGK 661 (961)
Q Consensus 633 eELEsle~EIEsLReEl~~L~rRLq~~~n 661 (961)
.-.+.+.-||-++.-+++.|..||+.++.
T Consensus 46 kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 46 KNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 33455555666677777777777777654
No 173
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=37.32 E-value=1.3e+02 Score=32.71 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=9.3
Q ss_pred HHHHHHHHhccccCCCCC
Q 002131 675 WTRICCLQNQGISMLNES 692 (961)
Q Consensus 675 ~~~I~~lq~q~lS~~d~n 692 (961)
...+.+|+. .+.+|.+.
T Consensus 263 ~~~~eeLr~-~l~P~~e~ 279 (307)
T 2l7b_A 263 EAAQARLKS-RFEPLAED 279 (307)
T ss_dssp HHHHHHHHH-HHTTCSCH
T ss_pred HhHHHHHHH-HhhhHHHH
Confidence 333444444 66676666
No 174
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=37.23 E-value=90 Score=26.21 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 613 HVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHEN 649 (961)
Q Consensus 613 ~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl 649 (961)
.+..++.++..|...-..|+.+|..+..++..|+.-+
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666666666555555555443
No 175
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=37.05 E-value=1e+02 Score=24.90 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 002131 804 LREKLYSKELEVEQLQAELATAV 826 (961)
Q Consensus 804 LkE~I~~ee~eleqlq~elas~~ 826 (961)
+.|++...+..++.|+.++|.++
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLl 25 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777776666
No 176
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.95 E-value=95 Score=24.74 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 480 RLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQL 520 (961)
Q Consensus 480 ~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqI 520 (961)
.|+..+..|..-+.+|.+.-.+++.-|..+.++|.+++..+
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777777777777665544
No 177
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=36.54 E-value=1.2e+02 Score=24.93 Aligned_cols=11 Identities=18% Similarity=0.123 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 002131 506 EAESRSMITHS 516 (961)
Q Consensus 506 i~El~~kIe~l 516 (961)
+.++..+|..+
T Consensus 32 L~~AR~el~~L 42 (51)
T 3m91_A 32 LKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 178
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=36.38 E-value=3.8e+02 Score=27.63 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=48.3
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHhHHHH----------HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 002131 819 QAELATAVRGNDILRCEVQNALDNLSCVT----------HKLKDLELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKV 888 (961)
Q Consensus 819 q~elas~~~~~~~lr~Eiq~l~dels~~~----------~k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v 888 (961)
-++++.++....+.+.+|+.+..+|.+.. -++.+||.+ .|--|.|++-|.-|..++ +.|...+..+
T Consensus 97 greiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~-~KdSeKI~RNQsKLssAE---taYkqvcsDi 172 (294)
T 3caz_A 97 GREIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKK-NKDQERIERNQQKFKDAE---AAYSSVCADL 172 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhc-cchHHHHHHhHHHhhhHH---HHHHHHHHHH
Confidence 33444444222444455555555555444 455555443 244558888777766555 5677888999
Q ss_pred HHHHHHHHHHHHHH
Q 002131 889 SEERDMMWEEVKQY 902 (961)
Q Consensus 889 ~eerd~~~ee~k~l 902 (961)
..+++.+|..--.+
T Consensus 173 InkMnkll~n~~ri 186 (294)
T 3caz_A 173 IQKMETVWKKHVSI 186 (294)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999765444
No 179
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=35.96 E-value=1.9e+02 Score=25.32 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 532 EENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTCS 584 (961)
Q Consensus 532 eELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~Ik 584 (961)
.+.+.+...+..+..+...++.++.....++.++-+--..++.+|+.++.-+.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555556666666666666666777776666777777777766554
No 180
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=35.85 E-value=2.2e+02 Score=24.90 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=42.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHH
Q 002131 858 LKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWE-------EVKQYSEKNMLLNSEVNVLKKKIEV 922 (961)
Q Consensus 858 ~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~e-------e~k~lke~~~~~k~Ev~~lkk~ie~ 922 (961)
....+.|..+....+....+|..++..+..|...-..+.. .+..++.++..++.....|+.....
T Consensus 32 ~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~ 103 (119)
T 3uun_A 32 SNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASME 103 (119)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344477777778888888888888888888877666643 2344555555555555555544433
No 181
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=35.63 E-value=1.4e+02 Score=25.98 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 609 KYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNR 655 (961)
Q Consensus 609 e~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rR 655 (961)
++...+.+.|.|+.+|......+|.+|..+..-...|..++....+.
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s 53 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIK 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35556677777777777777777777777666666665555444333
No 182
>2p4r_T E3 ubiquitin-protein ligase itchy homolog; SH3 domain peptide ligand complex; 2.00A {Rattus norvegicus}
Probab=35.59 E-value=20 Score=25.71 Aligned_cols=16 Identities=31% Similarity=0.577 Sum_probs=14.2
Q ss_pred CCCCCCcCCCCCCCCC
Q 002131 204 GRLPPRVQYTAPTSPV 219 (961)
Q Consensus 204 ~~~ppr~~~~~p~~~~ 219 (961)
..+||||+-+.|.+|.
T Consensus 5 ~~rP~rPsrPpP~tp~ 20 (26)
T 2p4r_T 5 PSRPPRPSRPPPPTPR 20 (26)
T ss_pred cCCCCCCCCCCCCCCC
Confidence 5699999999999987
No 183
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=35.59 E-value=1.6e+02 Score=34.15 Aligned_cols=35 Identities=6% Similarity=-0.112 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 482 RERVRELAEQNVSLQREVSTFNEREAESRSMITHS 516 (961)
Q Consensus 482 rERlreLeEknvsLqrEIe~leeKi~El~~kIe~l 516 (961)
-+++-.|.++..+++.+++.+.++.+.+...|..+
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777776554
No 184
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.39 E-value=97 Score=35.06 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhhchhHHhhhhcCCCCC
Q 002131 907 MLLNSEVNVLKKKIEVLDEDLLLKEGQITILKDTIGSKPF 946 (961)
Q Consensus 907 ~~~k~Ev~~lkk~ie~Leedi~~kEgqIsil~D~I~~~~~ 946 (961)
..+..++..++.++..|++.+...+.++..+--.|-|-|-
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~ 106 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPW 106 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3444555555555555555555555555555555555443
No 185
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=35.15 E-value=78 Score=27.68 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002131 621 QMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNG 660 (961)
Q Consensus 621 lerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ 660 (961)
+.........|+.++..++.+++.|+.++..|..+|..++
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455666667777777777777777777777776654
No 186
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=34.80 E-value=1.9e+02 Score=26.92 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=24.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 607 LDKYDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLL 653 (961)
Q Consensus 607 vee~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~ 653 (961)
+-++++.++.++.+-.+|...-...-..|..++.+++.|+.++..|.
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444444555555555555555555544
No 187
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=34.54 E-value=2.5e+02 Score=24.99 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEK 588 (961)
-.+...++.++..++...++++.++.+++.
T Consensus 43 t~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 43 TCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444433
No 188
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=33.91 E-value=88 Score=30.23 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 002131 483 ERVRELAEQNVSLQREVSTFNEREAES---RSMITHSEQQLK 521 (961)
Q Consensus 483 ERlreLeEknvsLqrEIe~leeKi~El---~~kIe~leeqIe 521 (961)
+++..|.+....|+.++..+...+..+ ..++.++..-++
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~ 50 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLE 50 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555 555555444333
No 189
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=33.68 E-value=5.8e+02 Score=28.98 Aligned_cols=20 Identities=5% Similarity=0.106 Sum_probs=13.5
Q ss_pred CCcccccccccccccccccc
Q 002131 225 KPKSHSFREAKGTRLRFSSR 244 (961)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~ 244 (961)
...-+.|+.+....+.|+..
T Consensus 42 ~L~i~nf~~~~~~~l~f~~g 61 (517)
T 4ad8_A 42 RLEIRNLATITQLELELGGG 61 (517)
T ss_dssp EEEEESBTTBSCEEEECCCS
T ss_pred eeecccccceeeEEEecCCC
Confidence 34556688887777777653
No 190
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=33.50 E-value=5.8e+02 Score=28.97 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 576 ITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRLTGVEMSLRREIESY 638 (961)
Q Consensus 576 Ia~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerLt~~eE~LReELEsl 638 (961)
+...+..|...-.++..|..-+ ..++.. +..+..++.+-+.-.....+...+++++|..+
T Consensus 310 l~~fk~~~~~~~~~~~~L~~~Y-~~f~~a--Y~~lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l 369 (413)
T 4hpq_C 310 IQKFKASCLEDIRQTRNLLDFY-ANFERS--YHNLLKEVKRRKETAAKLSQILKSCETQLEQI 369 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555444 444433 55555555555554444444444444444443
No 191
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=32.95 E-value=1.7e+02 Score=25.53 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 493 VSLQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQN 540 (961)
Q Consensus 493 vsLqrEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqe 540 (961)
..|...+....+.|..+.-=+-.+..++..++.--.+++.++.+++..
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s 53 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIK 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333333333333333333344444444444333333333333333
No 192
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.65 E-value=1.7e+02 Score=27.23 Aligned_cols=17 Identities=12% Similarity=0.306 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002131 574 KSITRLLRTCSEQEKTI 590 (961)
Q Consensus 574 KeIa~Lq~~Ik~lEKtI 590 (961)
+.|..|+..|..+...+
T Consensus 75 ~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 75 EDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 193
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=32.47 E-value=1.4e+02 Score=26.45 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhh
Q 002131 804 LREKLYSKELEVEQLQAELATAVRGNDILRCEVQNALDNLSCVTHKLKDLELQMLKKDE 862 (961)
Q Consensus 804 LkE~I~~ee~eleqlq~elas~~~~~~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D 862 (961)
|.|+|...+..++.||.++|.++-.. ..-..-++++++.||.++....+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy----------~ssQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEY----------ESMQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhcccCC
Confidence 56777777777777777777766111 11222344788888887766443
No 194
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.44 E-value=84 Score=34.68 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002131 494 SLQREVSTFNEREAESRSMI 513 (961)
Q Consensus 494 sLqrEIe~leeKi~El~~kI 513 (961)
++..+|..++..+......|
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i 28 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQI 28 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHH
Confidence 33334444433333333333
No 195
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=32.15 E-value=2.5e+02 Score=25.75 Aligned_cols=33 Identities=3% Similarity=0.028 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002131 564 EKEMECKDLQKSITRLLRTCSEQEKTIAGLRDG 596 (961)
Q Consensus 564 Eleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqE 596 (961)
.++..+.+++++|.........+.+.+....+.
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~n 51 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEKT 51 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444445544444444444444444333
No 196
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=32.12 E-value=3e+02 Score=25.17 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 465 SDWSFKLEKYQMEEQRLRERVRELAEQNVSL 495 (961)
Q Consensus 465 nE~~~kI~~~EsEkk~LrERlreLeEknvsL 495 (961)
.+|-.++...+.++..++..|..|...+..+
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~ 38 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAI 38 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777788888888888888887777665
No 197
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=31.69 E-value=2.9e+02 Score=24.84 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 476 MEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDLTRRA 527 (961)
Q Consensus 476 sEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~ltsel 527 (961)
.|++-|+-||.+++.... +++.++...+..|..+..+++.-..++
T Consensus 26 qEi~~Lr~kv~elEnErl-------QyEkKLKsTK~El~~Lq~qLe~kd~ei 70 (81)
T 3qh9_A 26 QELRHLKIKVEELENERN-------QYEWKLKATKAEVAQLQEQVALKDAEI 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHhhHHHH
Confidence 444444444444443333 333444444444444444444333333
No 198
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.28 E-value=1.5e+02 Score=24.99 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 614 VALLQREQMRLTGVEMSLRREIESYRVEVDSLRHE 648 (961)
Q Consensus 614 Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReE 648 (961)
.+.+..++..|...-..|+.+|..++.|+.-|++-
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555554444443
No 199
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.02 E-value=2.8e+02 Score=25.97 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002131 869 IDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQ-----YSEKNMLLNSEVNVLKKKIEVLDEDL 927 (961)
Q Consensus 869 ~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~-----lke~~~~~k~Ev~~lkk~ie~Leedi 927 (961)
+++++.+.+|+..++.|-.-.+++......+.. =+..+..=+.+|..++.+|.+|+..+
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666655555555554432 23444455566666666666666654
No 200
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=30.93 E-value=4.3e+02 Score=26.70 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 484 RVRELAEQNVSLQREVSTFNEREAESRSMITHS 516 (961)
Q Consensus 484 RlreLeEknvsLqrEIe~leeKi~El~~kIe~l 516 (961)
.|..|-.++..|..+|...+.++..+...-..+
T Consensus 49 ~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L 81 (250)
T 1quu_A 49 EVRALLRKHEAFESDLAAHQDRVEQIAAIAQEL 81 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554444333
No 201
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=30.85 E-value=2e+02 Score=30.75 Aligned_cols=15 Identities=7% Similarity=0.062 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 002131 578 RLLRTCSEQEKTIAG 592 (961)
Q Consensus 578 ~Lq~~Ik~lEKtIe~ 592 (961)
.++.++...+..+..
T Consensus 133 ~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 133 VVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 202
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.31 E-value=83 Score=25.92 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002131 628 EMSLRREIESYRVEVDSLRHENISLLNRLK 657 (961)
Q Consensus 628 eE~LReELEsle~EIEsLReEl~~L~rRLq 657 (961)
-+.|+.|+..++.+++.|..++..+..+|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444445555555544443
No 203
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.26 E-value=1.1e+02 Score=34.52 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002131 610 YDKHVALLQREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGK 661 (961)
Q Consensus 610 ~ek~Ie~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~n 661 (961)
++..+.+++...+.|....++++.++..+++++.....+...+-+.++++..
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444444444444444444444444444444444444444445554443
No 204
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=29.96 E-value=3.3e+02 Score=30.53 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=10.1
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 002131 908 LLNSEVNVLKKKIEVLDE 925 (961)
Q Consensus 908 ~~k~Ev~~lkk~ie~Lee 925 (961)
.+..++..+.+.++.|+.
T Consensus 98 ~a~~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 98 EAVAELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666666655543
No 205
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=29.92 E-value=3.7e+02 Score=25.66 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002131 570 KDLQKSITRLLRTCSEQEKT 589 (961)
Q Consensus 570 ~eleKeIa~Lq~~Ik~lEKt 589 (961)
.+|+++|+..+..|+..++-
T Consensus 85 ~~Ld~eI~~qe~iI~nFe~I 104 (119)
T 2avr_X 85 KKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555543
No 206
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=29.89 E-value=3.5e+02 Score=28.20 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002131 505 REAESRSMITHSEQQLKDLTRRA 527 (961)
Q Consensus 505 Ki~El~~kIe~leeqIe~ltsel 527 (961)
.+...+.+|..-+..|..++-.+
T Consensus 92 ~l~dHE~RIt~~~~~ia~~e~Ri 114 (242)
T 3c9i_A 92 DVDDHESRITANTKAITALNVRV 114 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHhhhhhhhhhhhhhee
Confidence 33333333333333333333333
No 207
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=29.67 E-value=4.3e+02 Score=27.55 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 466 DWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSM 512 (961)
Q Consensus 466 E~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~k 512 (961)
+++.+|...+.+..--+.|+..-+.....+..+|+..+.++..++.+
T Consensus 81 dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~ 127 (242)
T 3c9i_A 81 DHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTN 127 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhh
Confidence 33444444444444444444444433333333333333333333333
No 208
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=29.65 E-value=64 Score=30.87 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 002131 830 DILRCEVQNALDNLSCVTHKLKDLELQMLKKDESINQLQIDLQDSAKELKIMKGVL 885 (961)
Q Consensus 830 ~~lr~Eiq~l~dels~~~~k~k~LE~q~~K~~D~I~~lq~dlqe~~keis~~~g~L 885 (961)
.+++.|+++|.+.|.-++|+...++... ..+.|.+...++...+++|+++++.-
T Consensus 6 e~~K~Eiq~L~drLD~~~rKlaaa~~rg--d~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 6 EVEKNEIKRLSDRLDAIRHQQADLSLVE--AADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHSCTTT--CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999988875542 22378888888888888888877653
No 209
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.96 E-value=5e+02 Score=26.81 Aligned_cols=10 Identities=10% Similarity=0.391 Sum_probs=5.1
Q ss_pred HHHHHhHHhh
Q 002131 360 ELRRRSKEAE 369 (961)
Q Consensus 360 ~l~~~~ke~~ 369 (961)
++-.|||..+
T Consensus 51 ~i~~rAk~~~ 60 (213)
T 1ik9_A 51 EISQEADDMA 60 (213)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 3335666554
No 210
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=28.52 E-value=7.7e+02 Score=28.82 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhhhchhH
Q 002131 863 SINQLQIDLQDSAKELKIMKGVLPKVSEERDMM-WEEVKQYSEKNMLLNSEVNVLK-KKIEVLDEDLLLKEGQIT 935 (961)
Q Consensus 863 ~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~-~ee~k~lke~~~~~k~Ev~~lk-k~ie~Leedi~~kEgqIs 935 (961)
.+..+..=.++..+.|..+..+|-+=..+|-.- ..=++.|+.+++.+++.|+.=+ ..+|.+=+.+....|.|-
T Consensus 154 Al~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~yr~k~~aL~~aIe~Er~~~~EEAIqe~~dmsaeI~ 228 (526)
T 3iyk_A 154 AVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVL 228 (526)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHH
Confidence 555656666677777777777776655555433 3346778888888888887653 345555566666666553
No 211
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=28.25 E-value=7.8e+02 Score=28.82 Aligned_cols=11 Identities=18% Similarity=0.051 Sum_probs=8.3
Q ss_pred CcCCCCCCCCC
Q 002131 209 RVQYTAPTSPV 219 (961)
Q Consensus 209 r~~~~~p~~~~ 219 (961)
.|-..+|.+|.
T Consensus 140 ~PSeiAkddp~ 150 (551)
T 2b5u_A 140 LPSQIAKDDPN 150 (551)
T ss_dssp CGGGCCCSSSS
T ss_pred ccccccCCChh
Confidence 56788888876
No 212
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.16 E-value=65 Score=26.91 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 614 VALLQREQMRLTGVEMSLRREIESYRVEVDSLRH 647 (961)
Q Consensus 614 Ie~lq~ElerLt~~eE~LReELEsle~EIEsLRe 647 (961)
+..++.++..|+..-..|+.+|..++.++..|++
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555554443
No 213
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=28.07 E-value=2.8e+02 Score=24.33 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002131 863 SINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDE 925 (961)
Q Consensus 863 ~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Lee 925 (961)
.|..|+.++..-+.+|..++.+ +..-...++.+...+-.++-|-+.|.+++..|++
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~-------i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEV-------IALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3444555555555555444433 3344445555666666666777777777666554
No 214
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=27.90 E-value=5.6e+02 Score=27.07 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 486 RELAEQNVSLQREVSTFNEREAESRSMITHS 516 (961)
Q Consensus 486 reLeEknvsLqrEIe~leeKi~El~~kIe~l 516 (961)
..+..++..|+.||..-+.++..+...=..+
T Consensus 44 ~~~~~kh~~le~El~a~e~~v~~v~~~g~~L 74 (283)
T 3pe0_A 44 TAKKESYSALMRELELKEKKIKELQNAGDRL 74 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344456666666666666665555554444
No 215
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=27.41 E-value=2.1e+02 Score=26.36 Aligned_cols=63 Identities=25% Similarity=0.314 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGLEKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQR 497 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yLEKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqr 497 (961)
+..||..-...|..+...++..++.||.++..+ +..|+..++.-+.|+++...|+.....|..
T Consensus 30 VQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~e-I~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 30 VQQEMATTFARLCQQVDMTQKHLEEEIARLSKE-IDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 677888888899999999999999888888753 356777778888888777777766665543
No 216
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.16 E-value=1.3e+02 Score=27.25 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002131 618 QREQMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNGK 661 (961)
Q Consensus 618 q~ElerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~n 661 (961)
+.+.+.|..-++.|..+|.....+|+.|..++.....+|+++..
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444446666677777777777777777777777766543
No 217
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.81 E-value=45 Score=23.67 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 485 VRELAEQNVSLQREVSTFNEREAE 508 (961)
Q Consensus 485 lreLeEknvsLqrEIe~leeKi~E 508 (961)
+|.|.+++.+|+.||+.++=.|..
T Consensus 2 irrlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 456777777777777776655544
No 218
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.18 E-value=4.8e+02 Score=25.65 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 002131 866 QLQIDLQDSAKELKIMKGVLPKVSEERDMMWE 897 (961)
Q Consensus 866 ~lq~dlqe~~keis~~~g~L~~v~eerd~~~e 897 (961)
.+...+.+...-|+.|.+.|..=.++|..+.+
T Consensus 72 ~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~ 103 (152)
T 4fla_A 72 RLSKTVDEACLLLAEYNGRLAAELEDRRQLAR 103 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554444444433
No 219
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=25.67 E-value=5.7e+02 Score=26.37 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=15.3
Q ss_pred HHHhcChHHHHHHHHHHhhhhHHHH
Q 002131 397 QTIRILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 397 ~~i~~~~edRR~i~EEaaGi~Kyk~ 421 (961)
..+..+.+.-..+.+|++..++=|.
T Consensus 10 ~~l~~~~~~g~~~~~el~~f~keRa 34 (301)
T 2efk_A 10 EVLERHTQWGLDLLDRYVKFVKERT 34 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777666544
No 220
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.49 E-value=1.2e+02 Score=22.21 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 002131 897 EEVKQYSEKNMLLNSEVNV 915 (961)
Q Consensus 897 ee~k~lke~~~~~k~Ev~~ 915 (961)
++...+++.+..++-|+..
T Consensus 9 qeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 9 QEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 221
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=25.22 E-value=5.1e+02 Score=25.67 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002131 575 SITRLLRTCSEQEKTIAGLRDGF 597 (961)
Q Consensus 575 eIa~Lq~~Ik~lEKtIe~LrqEL 597 (961)
.+...+..++.+++.+...+.+|
T Consensus 70 n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 70 KTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555
No 222
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=25.03 E-value=5.4e+02 Score=25.89 Aligned_cols=24 Identities=4% Similarity=0.059 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhcc
Q 002131 581 RTCSEQEKTIAGLRDGFSDQIEKK 604 (961)
Q Consensus 581 ~~Ik~lEKtIe~LrqEL~eEleke 604 (961)
..+.++...+.-...+|...++.+
T Consensus 106 kdlEelr~kL~P~~eEL~~~l~~~ 129 (191)
T 1nfn_A 106 ADMEDVCGRLVQYRGEVQAMLGQS 129 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444444555555554555555
No 223
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.02 E-value=3e+02 Score=28.59 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 002131 526 RAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEMECK--DLQKSITRLLRTCSEQEKTI 590 (961)
Q Consensus 526 elEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eEleeei~--eleKeIa~Lq~~Ik~lEKtI 590 (961)
+++.+..++..++.++.++.++|.-+..+++++|+.......+.. .+++-+..|.--++.++.-+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl 126 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERAL 126 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344566667777777777777777777788888777766555543 34455666666666666554
No 224
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.01 E-value=2.5e+02 Score=22.18 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 002131 569 CKDLQKSITRLLRT 582 (961)
Q Consensus 569 i~eleKeIa~Lq~~ 582 (961)
+.=++++|+.++..
T Consensus 33 iaylekeianlrkk 46 (49)
T 3he5_A 33 IAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 225
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.57 E-value=1.3e+02 Score=26.88 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002131 621 QMRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLKGNG 660 (961)
Q Consensus 621 lerLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq~~~ 660 (961)
|.........|+.+...+..+++.|+.++..|..+|+.+.
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555666666666666666677777777777776654
No 226
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=24.31 E-value=6.8e+02 Score=26.79 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=11.2
Q ss_pred ChHHHHHHHHHHhhhhHHHH
Q 002131 402 LTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 402 ~~edRR~i~EEaaGi~Kyk~ 421 (961)
+-+.-..+.+|.+.+++=|.
T Consensus 37 r~~~g~~~~~el~~f~keRa 56 (350)
T 3aco_A 37 RIDDGHRLCSDLMNCLHERA 56 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666544
No 227
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.30 E-value=2.7e+02 Score=22.19 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002131 566 EMECKDLQKSITRLLRTCSEQE 587 (961)
Q Consensus 566 eeei~eleKeIa~Lq~~Ik~lE 587 (961)
+.....++|-|+.|+..|..++
T Consensus 23 erdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 23 ERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHHHHHHHHHHHHHHHH
Confidence 3333334444444444333333
No 228
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=24.24 E-value=3e+02 Score=26.51 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002131 438 LESRTRRLEREKVELQSGL 456 (961)
Q Consensus 438 Le~QLepLEkQaekAK~yL 456 (961)
++..+..|+++...+...+
T Consensus 11 l~~KvAElekkv~~lek~l 29 (125)
T 2pms_C 11 PQAKIAELENQVHRLEQEL 29 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 229
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.24 E-value=1.2e+02 Score=24.89 Aligned_cols=29 Identities=14% Similarity=0.011 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 621 QMRLTGVEMSLRREIESYRVEVDSLRHEN 649 (961)
Q Consensus 621 lerLt~~eE~LReELEsle~EIEsLReEl 649 (961)
++.|..+...|+.+++.+..++++|+.++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 230
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.14 E-value=1.7e+02 Score=28.12 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 501 TFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGDLRQNLSELGEKFRAAEADLYCIKRNFEEKEM 567 (961)
Q Consensus 501 ~leeKi~El~~kIe~leeqIe~ltselEeleeELeeleqeleEl~ee~qeaeEeld~iR~e~eElee 567 (961)
.+...+.++..-|-....+|+.+-..+-.+...-+.....+.++.++...+..++....++-+.+-.
T Consensus 54 ~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~ 120 (132)
T 1ykh_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMR 120 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555555444443333333444444445555554444444444443333
No 231
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.02 E-value=2.9e+02 Score=24.92 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002131 483 ERVRELAEQNVSLQREVSTFN 503 (961)
Q Consensus 483 ERlreLeEknvsLqrEIe~le 503 (961)
.++.+|+..|..|..+|+.++
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLS 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333
No 232
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=23.49 E-value=6.5e+02 Score=26.31 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=12.0
Q ss_pred cChHHHHHHHHHHhhhhHHHH
Q 002131 401 ILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 401 ~~~edRR~i~EEaaGi~Kyk~ 421 (961)
.+-..-..+.+|.+.+++=|.
T Consensus 36 ~r~~~g~~~~~el~~f~keRa 56 (312)
T 3abh_A 36 KRIDDGHRLCSDLMNCLHERA 56 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666554
No 233
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.46 E-value=3e+02 Score=31.88 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=22.7
Q ss_pred HHH-HHHHHHHHHHHHHHHhhhhchhHHhhhhcCCCCC
Q 002131 910 NSE-VNVLKKKIEVLDEDLLLKEGQITILKDTIGSKPF 946 (961)
Q Consensus 910 k~E-v~~lkk~ie~Leedi~~kEgqIsil~D~I~~~~~ 946 (961)
..+ +..++.+|..|++.+...+.++..+--.|.|-|-
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~ 146 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILH 146 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 444 5666666666666666666666666666665543
No 234
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.17 E-value=1.4e+02 Score=23.05 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 627 VEMSLRREIESYRVEVDSLRHENISLL 653 (961)
Q Consensus 627 ~eE~LReELEsle~EIEsLReEl~~L~ 653 (961)
+-++|..+|+....+|..|++++..|.
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456788889999999999999888764
No 235
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=23.10 E-value=6.9e+02 Score=26.44 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=15.1
Q ss_pred HHhcChHHHHHHHHHHhhhhHHHH
Q 002131 398 TIRILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 398 ~i~~~~edRR~i~EEaaGi~Kyk~ 421 (961)
.+..+-+.-..+.+|.+.+++-|.
T Consensus 24 ~l~~r~~~g~~~~~el~~f~keRa 47 (337)
T 2x3v_A 24 RTVKRIDDGHRLCNDLMSCVQERA 47 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777777776555
No 236
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=22.91 E-value=5.2e+02 Score=24.94 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 486 RELAEQNVSLQREVSTFNEREAESRSM 512 (961)
Q Consensus 486 reLeEknvsLqrEIe~leeKi~El~~k 512 (961)
..+-.++..|+.+|......+..+...
T Consensus 36 ~~ll~kh~~~~~ei~~~~~~v~~v~~~ 62 (213)
T 1cun_A 36 QNLRKKHKRLEAELAAHEPAIQSVLDT 62 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444555555555555554444433
No 237
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=22.80 E-value=67 Score=36.40 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 559 KRNFEEKEMECKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 559 R~e~eEleeei~eleKeIa~Lq~~Ik~lEK 588 (961)
+.+...+..++..++.++..++..+...=-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555444333
No 238
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=22.70 E-value=6.5e+02 Score=26.01 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 430 ELRMVKADLESRTRRLEREKVELQSGLEKEL 460 (961)
Q Consensus 430 nL~Ri~~ELe~QLepLEkQaekAK~yLEKEL 460 (961)
.+..-+.+|..+...|..-+..-+..|+..+
T Consensus 80 ~i~~~l~~l~~~w~~L~~~~~~R~~~Le~~l 110 (326)
T 3kbt_A 80 QIIRLQGQVDKHYAGLKDVAEERKRKLENMY 110 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666666666666666664443
No 239
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.70 E-value=1.5e+02 Score=26.05 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002131 622 MRLTGVEMSLRREIESYRVEVDSLRHENISLLNRLK 657 (961)
Q Consensus 622 erLt~~eE~LReELEsle~EIEsLReEl~~L~rRLq 657 (961)
.........|+.+...+..+++.|+.++..|..+|.
T Consensus 43 ~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 43 TKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555555555555555554
No 240
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.43 E-value=2e+02 Score=26.05 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 616 LLQREQMRLTGVEMSLRREIESYRVEVDSLRHENIS 651 (961)
Q Consensus 616 ~lq~ElerLt~~eE~LReELEsle~EIEsLReEl~~ 651 (961)
.++.+.+.|..+=..|+.+|+.++.|+..|+.-+..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666666666555443
No 241
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=22.37 E-value=5.3e+02 Score=27.87 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=23.6
Q ss_pred HHHHHHhcChHHHHHHHHHHhhhhHHHH
Q 002131 394 AMIQTIRILTEEKMSLALEVSGLLQSRI 421 (961)
Q Consensus 394 ~~~~~i~~~~edRR~i~EEaaGi~Kyk~ 421 (961)
.+...+...|.+||.+++.+.|+..|..
T Consensus 136 ~~~~~~~~~~~~Rr~~ld~~~~~~~~~~ 163 (371)
T 3auy_A 136 EIAKFLSLKPSEKLETVAKLLGIDEFEK 163 (371)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHhcCHHHHHHHHHHHhChHHHHH
Confidence 4567788999999999999999976654
No 242
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.35 E-value=1.5e+02 Score=23.57 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 560 RNFEEKEMECKDLQKSITRLLRTCSEQEK 588 (961)
Q Consensus 560 ~e~eEleeei~eleKeIa~Lq~~Ik~lEK 588 (961)
..+.....+|.+.++.|+.++..+..++.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666666555555543
No 243
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=22.27 E-value=4.1e+02 Score=27.57 Aligned_cols=108 Identities=11% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 002131 569 CKDLQKSITRLLRTCSEQ----EKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQ-MRLTGVEMSLRREIESYRVEVD 643 (961)
Q Consensus 569 i~eleKeIa~Lq~~Ik~l----EKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~El-erLt~~eE~LReELEsle~EIE 643 (961)
...+...+..++..+.-. ..++..-.+++.+.+.++ ++++..+++-...++ ..+....+.+|.+|.-+-.++
T Consensus 50 ~~~l~~~~~~l~~~l~p~~ee~~~~l~~~~~~lr~~l~kd--~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel- 126 (243)
T 2a01_A 50 WDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKD--LEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAEL- 126 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--SSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHhhhcCCchhhhHhhhhHHHHHHHHHHHhc
Q 002131 644 SLRHENISLLNRLKGNGKESAALTMKLDKELWTRICCLQNQ 684 (961)
Q Consensus 644 sLReEl~~L~rRLq~~~ne~~~~~~kl~~El~~~I~~lq~q 684 (961)
...+...+..++....+.+..+...+..+|..++.+
T Consensus 127 -----~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~ 162 (243)
T 2a01_A 127 -----QEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTH 162 (243)
T ss_dssp -----HHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 244
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=22.25 E-value=6.5e+02 Score=25.79 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhh--hhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 434 VKADLESRTRRLEREKVELQSGL--EKELDRRS--SDWSFKLEKYQME-----EQRLRERVRELAEQNVSLQREVSTFNE 504 (961)
Q Consensus 434 i~~ELe~QLepLEkQaekAK~yL--EKEL~rrq--nE~~~kI~~~EsE-----kk~LrERlreLeEknvsLqrEIe~lee 504 (961)
.+.++...+..|.....+...-+ =..|..++ .-+-..|+....= .-.--++||.|+++-...-.+|...-.
T Consensus 50 ~~~~~~~~~~~l~~~s~~I~~i~~~I~~IA~QTNLLALNAaIEAARAGE~GrGFAVVA~EVRkLA~~t~~at~~I~~~i~ 129 (227)
T 1qu7_A 50 VVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIE 129 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555554444444444 33444444 3334444333221 123356677777777777777665543
No 245
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=21.97 E-value=4e+02 Score=23.29 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 486 RELAEQNVSLQREVSTFNEREAESRSM 512 (961)
Q Consensus 486 reLeEknvsLqrEIe~leeKi~El~~k 512 (961)
..+-.++..|..+|..-...+..+...
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~v~~~ 65 (118)
T 3uul_A 39 KEQFATHETFMMELSAHQSSVGSVLQA 65 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333
No 246
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=21.91 E-value=4.1e+02 Score=23.37 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 497 REVSTFNEREAESRSMITHSEQQLKDLTRRAEQYTEENGD 536 (961)
Q Consensus 497 rEIe~leeKi~El~~kIe~leeqIe~ltselEeleeELee 536 (961)
..++-+.=+.+-+.++|.+++.+++.+......+=+.+..
T Consensus 7 ~~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~ 46 (72)
T 2xu6_A 7 NSLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIAN 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333333333
No 247
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=21.48 E-value=4.2e+02 Score=29.01 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 495 LQREVSTFNEREAESRSMITHSEQQLKDLTRRAEQY 530 (961)
Q Consensus 495 LqrEIe~leeKi~El~~kIe~leeqIe~ltselEel 530 (961)
|...++.+-++..++....+.+..++.+++.....+
T Consensus 8 l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W 43 (302)
T 3ibp_A 8 LSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVW 43 (302)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHH
Confidence 334444444444444444445555554444444333
No 248
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=21.40 E-value=3.1e+02 Score=28.97 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=11.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002131 902 YSEKNMLLNSEVNVLKKKIEVLDEDL 927 (961)
Q Consensus 902 lke~~~~~k~Ev~~lkk~ie~Leedi 927 (961)
.+..+...+.++..++..++.++..+
T Consensus 119 a~~~~~~~~a~l~~~~a~l~~a~a~l 144 (341)
T 3fpp_A 119 AATEMAVKQAQIGTIDAQIKRNQASL 144 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 249
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=21.22 E-value=5.3e+02 Score=24.75 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhch
Q 002131 854 ELQMLKKDESINQLQIDLQDSAKELKIMKGVLPKVSEERDMMWEEVKQYSEKNMLLNSEVNVLKKKIEVLDEDLLLKEGQ 933 (961)
Q Consensus 854 E~q~~K~~D~I~~lq~dlqe~~keis~~~g~L~~v~eerd~~~ee~k~lke~~~~~k~Ev~~lkk~ie~Leedi~~kEgq 933 (961)
+.-+.=.++.+......+.|-+++|+.-..++.+|+++. |..+. ++..++-.+.-.|+=++.++..|..++..
T Consensus 76 ~D~LSFVD~~LSk~~~aldekekqlavaneiirslsdev--mrnei-----ritslqgdltftkkclenarsqisekdak 148 (166)
T 1nyh_A 76 EDGLSFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEV--MRNEI-----RITSLQGDLTFTKKCLENARSQISEKDAK 148 (166)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--Hhhhe-----eeeeeccchhhHHHHHHHHHhhhhhhhHH
Q ss_pred hHHh
Q 002131 934 ITIL 937 (961)
Q Consensus 934 Isil 937 (961)
|-+|
T Consensus 149 inkl 152 (166)
T 1nyh_A 149 INKL 152 (166)
T ss_dssp HHHS
T ss_pred HHHH
No 250
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=21.21 E-value=6.1e+02 Score=25.08 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhhcCCchhhhHhhhhHHHHHHHHHHHh
Q 002131 631 LRREIESYRVEVDSLRHEN-ISLLNRLKGNGKESAALTMKLDKELWTRICCLQN 683 (961)
Q Consensus 631 LReELEsle~EIEsLReEl-~~L~rRLq~~~ne~~~~~~kl~~El~~~I~~lq~ 683 (961)
++..++.++..+.-+-+++ ..+...+..++....+.+..+...+..++.+++.
T Consensus 109 ~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~ 162 (185)
T 3r2p_A 109 WQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRT 162 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333 2445567778888888888888888888888887
No 251
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=21.06 E-value=3.3e+02 Score=22.60 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 538 RQNLSELGEKFRAAEADLYCIKRNFEEKEMECKDLQKSITRLLRTC 583 (961)
Q Consensus 538 eqeleEl~ee~qeaeEeld~iR~e~eEleeei~eleKeIa~Lq~~I 583 (961)
+..+..+..+...++.++...-.++.++-+--..++.+|+.++.-+
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344444445555555555555666666665566666666665544
No 252
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=20.69 E-value=1.6e+02 Score=31.15 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=5.4
Q ss_pred HHHHHHHhc
Q 002131 697 SQLLEFIKG 705 (961)
Q Consensus 697 ~KLL~~IK~ 705 (961)
.++|++-+.
T Consensus 125 ErILkaaR~ 133 (233)
T 2yko_A 125 EKMLRAARE 133 (233)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 566666653
No 253
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=20.65 E-value=60 Score=33.96 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=0.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002131 457 EKELDRRSSDWSFKLEKYQMEEQRLRERVRELAEQNVSLQREVSTFNEREAESRSMITHSEQQLKDL 523 (961)
Q Consensus 457 EKEL~rrqnE~~~kI~~~EsEkk~LrERlreLeEknvsLqrEIe~leeKi~El~~kIe~leeqIe~l 523 (961)
.++|+.+=.++.+-|+++|..+... +.|..+..+|.++..-++.+-+.....++.+.+....+
T Consensus 13 ~ke~q~~~~~ye~ai~~~qen~~k~----e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~y 75 (267)
T 3tkl_B 13 DKEIQKMLDEYEQAIKRAQENIKKG----EELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDS 75 (267)
T ss_dssp ------------------------------------------------------------------C
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 3455555556666677666643322 55666666666666666666666666666665444433
No 254
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.56 E-value=4.7e+02 Score=23.54 Aligned_cols=88 Identities=11% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhcchhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 002131 562 FEEKEMECKDLQKSITRLLRTCSEQEKTIAGLRDGFSDQIEKKPALDKYDKHVALLQREQMRL---TGVEMSLRREIESY 638 (961)
Q Consensus 562 ~eEleeei~eleKeIa~Lq~~Ik~lEKtIe~LrqEL~eEleke~~vee~ek~Ie~lq~ElerL---t~~eE~LReELEsl 638 (961)
|..-+.+...+..+|...-..+..+.. ....+-+ .+++.. +++...-|..|..|+..+ ......+..+|..+
T Consensus 3 F~~YE~df~~~~~~i~~~l~~~~~~~g--e~Rk~~i-~~ie~~--ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Y 77 (97)
T 3onj_A 3 LISYESDFKTTLEQAKASLAEAPSQPL--SQRNTTL-KHVEQQ--QDELFDLLDQMDVEVNNSIGDASERATYKAKLREW 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCH--HHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCh--HHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHHHHHHHHH
Q 002131 639 RVEVDS-LRHENISLLN 654 (961)
Q Consensus 639 e~EIEs-LReEl~~L~r 654 (961)
+.++.. |+.++..+..
T Consensus 78 k~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 78 KKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
No 255
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.55 E-value=4.7e+02 Score=23.58 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002131 572 LQKSITRLLRTCSEQEKTIA 591 (961)
Q Consensus 572 leKeIa~Lq~~Ik~lEKtIe 591 (961)
..++|..++..|..+++.|.
T Consensus 56 h~~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 256
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=20.44 E-value=95 Score=30.92 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=28.5
Q ss_pred HHHhcChHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002131 397 QTIRILTEEKMSLALEVSGLLQSRIVERASAKEELRMVKADLESRTRRLER 447 (961)
Q Consensus 397 ~~i~~~~edRR~i~EEaaGi~Kyk~aerk~t~enL~Ri~~ELe~QLepLEk 447 (961)
..+... .+|+.+|++++|+..|+.+. +.|...+.+++.++..|+.
T Consensus 145 ~~l~~~-~er~~~l~~i~g~~~~~~~~-----~~l~~~~~~~~~~~~~l~~ 189 (203)
T 3qks_A 145 AILESD-EAREKVVREVLNLDKFETAY-----KKLSELKKTINNRIKEYRD 189 (203)
T ss_dssp HHHHCH-HHHHHHHHHHTCCCTTHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCc-HHHHHHHHHHHCCHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 334444 99999999999999998532 3333344444444444443
Done!