BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002132
(961 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 117/306 (38%), Gaps = 65/306 (21%)
Query: 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNL 272
++I GM G GK+ LA A + LL C V K L + NL
Sbjct: 150 VTIHGMAGCGKSVLAAEAV-------RDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNL 202
Query: 273 -------GEFQSLLKLISESITGK----------RFLLVLDDVWDGDCIKWEPFYLCLKN 315
F L L E + R LL+LDDVWD W LK
Sbjct: 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKA 253
Query: 316 GLHGSKILVTTRKKSVASMMGSTDTDIITVMELTEE---ECWSLFKRLAFFGPSINDCEK 372
+IL+TTR KSV + + L +E E SLF +
Sbjct: 254 FDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK--------KAD 305
Query: 373 LEQIGRRIAGKFKGLPLAAKTIGSLMRS---------KQIE-EEWERISNSDLWRVEEME 422
L + I + KG PL IG+L+R KQ++ ++++RI S + E ++
Sbjct: 306 LPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALD 365
Query: 423 KGVLSSLLLSYNDLPSKVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAKQNKEMETI 482
+ ++ +S L +K ++ ++ K+ + L LW + +E+E I
Sbjct: 366 E----AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW-------DMETEEVEDI 414
Query: 483 GEEYFS 488
+E+ +
Sbjct: 415 LQEFVN 420
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 112/282 (39%), Gaps = 56/282 (19%)
Query: 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNL 272
++I GM G GK+ LA A + LL C S + K L + NL
Sbjct: 150 VTIYGMAGCGKSVLAAEAV-------RDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202
Query: 273 G-------EFQSLLKLISESITGK----------RFLLVLDDVWDGDCIKWEPFYLCLKN 315
F L L E + R LL+LDDVWD P+ LK
Sbjct: 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-------PW--VLKA 253
Query: 316 GLHGSKILVTTRKKSVA-SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSIN-DCEKL 373
+ +IL+TTR KSV S+MG ++ V E K L +N E L
Sbjct: 254 FDNQCQILLTTRDKSVTDSVMGP--KHVVPVESGLGRE-----KGLEILSLFVNMKKEDL 306
Query: 374 EQIGRRIAGKFKGLPLAAKTIGSLMRS---------KQIE-EEWERISNSDLWRVEEMEK 423
I + KG PL IG+L+R +Q++ ++++RI S + E +++
Sbjct: 307 PAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDE 366
Query: 424 GVLSSLLLSYNDLPSKVKICFSYCAVFPKNYNIKKDELLTLW 465
++ +S L +K ++ ++ K+ + L LW
Sbjct: 367 ----AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 117/306 (38%), Gaps = 65/306 (21%)
Query: 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNL 272
++I GM G GK+ LA A + LL C V K L + NL
Sbjct: 156 VTIHGMAGCGKSVLAAEAV-------RDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNL 208
Query: 273 G-------EFQSLLKLISESITGK----------RFLLVLDDVWDGDCIKWEPFYLCLKN 315
F L L E + R LL+LDDVWD W LK
Sbjct: 209 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----W-----VLKA 259
Query: 316 GLHGSKILVTTRKKSVASMMGSTDTDIITVMELTEE---ECWSLFKRLAFFGPSINDCEK 372
+IL+TTR KSV + + L +E E SLF +
Sbjct: 260 FDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK--------AD 311
Query: 373 LEQIGRRIAGKFKGLPLAAKTIGSLMRS---------KQIE-EEWERISNSDLWRVEEME 422
L + I + KG PL IG+L+R KQ++ ++++RI S + E ++
Sbjct: 312 LPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALD 371
Query: 423 KGVLSSLLLSYNDLPSKVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAKQNKEMETI 482
+ ++ +S L +K ++ ++ K+ + L LW + +E+E I
Sbjct: 372 E----AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW-------DMETEEVEDI 420
Query: 483 GEEYFS 488
+E+ +
Sbjct: 421 LQEFVN 426
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 111/282 (39%), Gaps = 56/282 (19%)
Query: 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNL 272
++I GM G GK+ LA A + LL C S + K L + NL
Sbjct: 157 VTIYGMAGCGKSVLAAEAV-------RDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 209
Query: 273 G-------EFQSLLKLISESITGK----------RFLLVLDDVWDGDCIKWEPFYLCLKN 315
F L L E + R LL+LDDVWD P+ LK
Sbjct: 210 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-------PW--VLKA 260
Query: 316 GLHGSKILVTTRKKSVA-SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSIN-DCEKL 373
+ +IL+TT KSV S+MG ++ V E K L +N E L
Sbjct: 261 FDNQCQILLTTSDKSVTDSVMGP--KHVVPVESGLGRE-----KGLEILSLFVNMKKEDL 313
Query: 374 EQIGRRIAGKFKGLPLAAKTIGSLMRS---------KQIE-EEWERISNSDLWRVEEMEK 423
I + KG PL IG+L+R +Q++ ++++RI S + E +++
Sbjct: 314 PAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDE 373
Query: 424 GVLSSLLLSYNDLPSKVKICFSYCAVFPKNYNIKKDELLTLW 465
++ +S L +K ++ ++ K+ + L LW
Sbjct: 374 ----AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 411
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 626 EKLVHLRYLNLSCQNIRKLPETLCE-LYNLEKLYITRCLYLEELPEGI-GKLINMKHLLN 683
+KL +L YLNL+ ++ LP+ + + L NL +L ++ L+ LPEG+ KL +K L
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRL 188
Query: 684 YRTDSLRYMPVGI-GRLTGLR 703
Y+ + L+ +P G+ RLT L+
Sbjct: 189 YQ-NQLKSVPDGVFDRLTSLQ 208
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 625 IEKLVHLRYLNLSCQNIRKLPETLCE-LYNLEKLYITRCLYLEELPEGI-GKLINMKHLL 682
+++L +L YL L+ ++ LP + + L NL++L + L+ LP+G+ KL N+ + L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTY-L 138
Query: 683 NYRTDSLRYMPVGI-GRLTGLRTLD 706
N + L+ +P G+ +LT L LD
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELD 163
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 595 LFRESTSLRALDFWGSYDVSPFWTLKIPRNI-EKLVHLRYLNLSCQNIRKLPETLCE-LY 652
+F E TSL L G+ S +P + KL L YLNLS ++ LP + + L
Sbjct: 47 VFDELTSLTQLYLGGNKLQS------LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100
Query: 653 NLEKLYITRCLYLEELPEGI-GKLINMKHLLNYRTDSLRYMPVGI-GRLTGLR 703
L++L + L+ LP+G+ KL +K L Y+ + L+ +P G+ RLT L+
Sbjct: 101 QLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQ 151
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 217 GMGGIGKTTLAQLACNHVEVKRK----FDKLLWVCVSDPFEQFRVAKAIAEALG--IPSS 270
G+ G GKT +A+L +E + K ++V +RVA AIAEA+G +P +
Sbjct: 51 GLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFT 110
Query: 271 NL--GE-FQSLLKLISESITGKRFLLVLDDV 298
L GE ++ L+K +S + G +++VLD++
Sbjct: 111 GLSVGEVYERLVKRLSR-LRGI-YIIVLDEI 139
>pdb|1VT4|I Chain I, Structure Of The Drosophila Apoptosome
pdb|1VT4|J Chain J, Structure Of The Drosophila Apoptosome
pdb|1VT4|K Chain K, Structure Of The Drosophila Apoptosome
pdb|1VT4|L Chain L, Structure Of The Drosophila Apoptosome
pdb|1VT4|M Chain M, Structure Of The Drosophila Apoptosome
pdb|1VT4|N Chain N, Structure Of The Drosophila Apoptosome
pdb|1VT4|O Chain O, Structure Of The Drosophila Apoptosome
pdb|1VT4|P Chain P, Structure Of The Drosophila Apoptosome
pdb|3IZ8|A Chain A, Structure Of The Drosophila Apoptosome
pdb|3IZ8|B Chain B, Structure Of The Drosophila Apoptosome
pdb|3IZ8|C Chain C, Structure Of The Drosophila Apoptosome
pdb|3IZ8|D Chain D, Structure Of The Drosophila Apoptosome
pdb|3IZ8|E Chain E, Structure Of The Drosophila Apoptosome
pdb|3IZ8|F Chain F, Structure Of The Drosophila Apoptosome
pdb|3IZ8|G Chain G, Structure Of The Drosophila Apoptosome
pdb|3IZ8|H Chain H, Structure Of The Drosophila Apoptosome
Length = 1221
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 110/273 (40%), Gaps = 47/273 (17%)
Query: 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFD-KLLWVCVSDPFEQFRVAKAIAEAL------ 265
+ I G+ G GKT +A C +V+ K D K+ W+ + + V + + + L
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 266 ----GIPSSNL----GEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL 317
SSN+ Q+ L+ + +S + LLVL +V + W F L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNL------ 264
Query: 318 HGSKILVTTRKKSVASMMGSTDTDIITV----MELTEEECWSLFKRLAFFGPSINDCEKL 373
KIL+TTR K V + + T I++ M LT +E SL + DC
Sbjct: 265 -SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQ 316
Query: 374 EQIGRRIAGKFKGLPLAAKTIGSLMRSKQIEEEWERISNSDLWRVEEMEKGVLSSLLLSY 433
+ + + L + A++I + + + W+ ++ L + E VL
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLE------ 367
Query: 434 NDLPSKVKICFSYCAVFPKNYNIKKDELLTLWM 466
P++ + F +VFP + +I L +W
Sbjct: 368 ---PAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.69, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 626 EKLVHLRYLNLSCQNIRKLPETLCE-LYNLEKLYITRCLYLEELPEGIGKLINMKHLLNY 684
+ L L L+L + LP + + L +L++L++ C L ELP GI +L ++ HL
Sbjct: 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLA-L 142
Query: 685 RTDSLRYMPVG-IGRLTGL 702
+ L+ +P G RL+ L
Sbjct: 143 DQNQLKSIPHGAFDRLSSL 161
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.7 bits (73), Expect = 0.97, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 626 EKLVHLRYLNLSCQNIRKLPETLCE-LYNLEKLYITRCLYLEELPEGI-GKLINMKHLLN 683
+KL +L YL L ++ LP+ + + L NL +L + L+ LPEG+ KL +K L+
Sbjct: 130 DKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN-QLQSLPEGVFDKLTQLKQ-LS 187
Query: 684 YRTDSLRYMPVGI-GRLTGL 702
+ L+ +P G+ RLT L
Sbjct: 188 LNDNQLKSVPDGVFDRLTSL 207
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 12/99 (12%)
Query: 4 AIVSPLVEQLISFVAKEIKQQVKLVIGVEKEVKGITSHLRAIRAVLDDAEE--KQVKDEA 61
A +S L+ +L + +E K L GV+K ++ + L + A L E ++ D
Sbjct: 1 AAISNLIPKLGELLTEEFK----LHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQ 56
Query: 62 VRLWLGRLKYASYDIEDVLDEWITARHKLQIEG-GADDN 99
+LW ++ SY IEDV+D+++ +Q++G +DDN
Sbjct: 57 DKLWADEVRELSYVIEDVVDKFL-----VQVDGIKSDDN 90
>pdb|3KJO|A Chain A, Crystal Structure Of Hpot1v2-Dtrud(Agggttag)
pdb|3KJP|A Chain A, Crystal Structure Of Hpot1v2-Ggttagggttag
Length = 299
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 581 RTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQN 640
RTS YFN + E AL W S +SP WTL +++ ++Y +L+CQ
Sbjct: 117 RTSSKYFNFTTEDHKMVE-----ALRVWASTHMSPSWTLLKLCDVQP---MQYFDLTCQL 168
Query: 641 IRK 643
+ K
Sbjct: 169 LGK 171
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 23/104 (22%)
Query: 626 EKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITR-----------------------C 662
+ LV+L+ L L IR LP ++ L NL+ L I C
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 663 LYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706
L P G +K L+ +L +P+ I RLT L LD
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 86/226 (38%), Gaps = 55/226 (24%)
Query: 620 KIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKL-INM 678
++P ++ L L L+ +R LP ++ L L +L I C L ELPE + +
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 679 KH--LLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVC 736
+H L+N ++ L + TG+R+L +L+NLK L++
Sbjct: 178 EHQGLVNLQSLRLEW--------TGIRSL---------------PASIANLQNLKSLKI- 213
Query: 737 GIRRLGDVSDVGEA-----KRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQ 791
R +S +G A K ELD + C L GG
Sbjct: 214 ---RNSPLSALGPAIHHLPKLEELDLR---GCTALRNYPPIFGGRA-------------- 253
Query: 792 PPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPL 837
LK L ++ P + LT L L L GC N +LP L
Sbjct: 254 ---PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 561 SFRVPICRVKRIRSLLIDNSRTSC---SYFNGEILEEL-FRESTSLRALDFWGSYDVSPF 616
S I ++ ++SL I NS S + + LEEL R T+LR + P
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR--------NYPPI 248
Query: 617 WTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKL 675
+ + P R + C N+ LP + L LEKL + C+ L LP I +L
Sbjct: 249 FGGRAPLK-------RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|1XJV|A Chain A, Crystal Structure Of Human Pot1 Bound To Telomeric Single-
Stranded Dna (Ttagggttag)
Length = 294
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 581 RTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQN 640
RTS YFN + E AL W S +SP WTL +++ ++Y +L+CQ
Sbjct: 112 RTSSKYFNFTTEDHKMVE-----ALRVWASTHMSPSWTLLKLCDVQP---MQYFDLTCQL 163
Query: 641 IRK 643
+ K
Sbjct: 164 LGK 166
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 7 SPLVEQLISFVAKEIKQQVKLVIGVEKEVKGITSHLRAIRAVLDDAEEKQVKDEAVRLWL 66
SP+++ L++ V+ +GV + + H R + ++++ +E QV+ +A R WL
Sbjct: 187 SPIMKALMNTVS---------ALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWL 237
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 803 FYRGNTVFPNWLMSLTNLRSLVLYGCEN-CEQLPPLGK-----LQSLEKLSLTIMRSVKR 856
F+ G++ N L L +L L+ EN EQ+ K LQ L +L + +++
Sbjct: 312 FFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLH--ALPHVGDIRQ 369
Query: 857 VGDECLGIEII------DAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTI 910
+G C G E++ + +P + + L++ E +TR VI +P L+S
Sbjct: 370 LGFMC-GAELVRSKETKEPYPADRRIGYKVSLKMRELGM-LTRPLGDVIAFLPPLASTAE 427
Query: 911 ARCPKLKALPDHIHQTTTLKE 931
+ + IH+ T+L++
Sbjct: 428 ELSEMVAIMKQAIHEVTSLED 448
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 803 FYRGNTVFPNWLMSLTNLRSLVLYGCEN-CEQLPPLGK-----LQSLEKLSLTIMRSVKR 856
F+ G++ N L L +L L+ EN EQ+ K LQ L +L + +++
Sbjct: 312 FFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLH--ALPHVGDIRQ 369
Query: 857 VGDECLGIEII------DAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTI 910
+G C G E++ + +P + + L++ E +TR VI +P L+S
Sbjct: 370 LGFMC-GAELVRSKETKEPYPADRRIGYKVSLKMRELGM-LTRPLGDVIAFLPPLASTAE 427
Query: 911 ARCPKLKALPDHIHQTTTLKE 931
+ + IH+ T+L++
Sbjct: 428 ELSEMVAIMKQAIHEVTSLED 448
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 608 WGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEE 667
W + D+S I NI K L L L+ ++ +LP + L NL L ++ L
Sbjct: 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTS 284
Query: 668 LPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTL 705
LP +G +K+ + + + +P G L L+ L
Sbjct: 285 LPAELGSCFQLKYFY-FFDNMVTTLPWEFGNLCNLQFL 321
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 644 LPETLCELYNLEKLYITRCLYLEEL-PEGIGKLINMKHLLNYRTDSLRYMPVGI-GRLTG 701
LP+ EL NL L +++C LE+L P L +++ +LN ++ L+ +P GI RLT
Sbjct: 462 LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ-VLNMASNQLKSVPDGIFDRLTS 519
Query: 702 LR 703
L+
Sbjct: 520 LQ 521
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 566 ICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGS--YDVSPFWTLKIPR 623
+ ++I++LL++ S S S +G+ L EL + +TSL L+F+ + +SP I R
Sbjct: 160 VTHCRKIKTLLMEES--SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217
Query: 624 NIEKLVHLR 632
N LV ++
Sbjct: 218 NCRSLVSVK 226
>pdb|2P51|A Chain A, Crystal Structure Of The S. Pombe Pop2p Deadenylation
Subunit
pdb|3G0Z|A Chain A, Structure Of S. Pombe Pop2p - Zn2+ And Mn2+ Bound Form
pdb|3G10|A Chain A, Structure Of S. Pombe Pop2p - Mg2+ And Mn2+ Bound Form
Length = 333
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 447 CAVFPKNYNIKKDELLTLWMAQGYLSAKQNKEMETIGEEYF----SILASRSFFQ----E 498
C FPKNY+IK L ++G + ++ IG ++ ++L +R FF+
Sbjct: 197 CIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRY 256
Query: 499 FEKSYDNRII 508
F+ S D+R++
Sbjct: 257 FDGSIDSRML 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,925,525
Number of Sequences: 62578
Number of extensions: 1158772
Number of successful extensions: 3020
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2994
Number of HSP's gapped (non-prelim): 38
length of query: 961
length of database: 14,973,337
effective HSP length: 108
effective length of query: 853
effective length of database: 8,214,913
effective search space: 7007320789
effective search space used: 7007320789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)