Query 002132
Match_columns 961
No_of_seqs 552 out of 4660
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 17:13:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-89 3.2E-94 808.4 47.0 771 13-845 8-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.7E-65 1E-69 637.3 46.6 730 138-943 133-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.7E-43 1E-47 377.4 14.9 279 188-474 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 7E-27 1.5E-31 294.7 17.7 375 548-958 70-482 (968)
5 PLN00113 leucine-rich repeat r 99.9 5E-26 1.1E-30 287.0 15.6 376 547-959 164-555 (968)
6 KOG0444 Cytoskeletal regulator 99.9 3.4E-26 7.3E-31 242.9 -4.0 333 547-955 55-390 (1255)
7 KOG4194 Membrane glycoprotein 99.9 6.3E-24 1.4E-28 224.8 2.9 350 571-961 79-449 (873)
8 KOG4194 Membrane glycoprotein 99.9 5.2E-23 1.1E-27 217.9 4.0 345 548-940 103-452 (873)
9 KOG0444 Cytoskeletal regulator 99.8 2.8E-23 6E-28 220.9 -6.0 336 546-957 31-368 (1255)
10 PLN03210 Resistant to P. syrin 99.8 2.7E-20 5.8E-25 234.5 19.3 319 591-958 549-900 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 8.7E-22 1.9E-26 199.9 -5.3 142 550-706 71-212 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 3.8E-20 8.2E-25 188.1 -8.5 267 598-939 43-309 (565)
13 KOG0618 Serine/threonine phosp 99.6 3.4E-18 7.3E-23 191.8 -6.3 104 569-686 44-147 (1081)
14 KOG0618 Serine/threonine phosp 99.6 7.6E-18 1.6E-22 189.0 -4.3 321 593-939 38-395 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 3.9E-15 8.4E-20 173.6 12.3 261 600-943 201-461 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 3.6E-14 7.8E-19 166.9 9.7 90 601-706 179-268 (754)
17 PRK04841 transcriptional regul 99.4 9.2E-12 2E-16 156.9 25.9 295 182-524 13-332 (903)
18 PRK15387 E3 ubiquitin-protein 99.4 3.4E-13 7.5E-18 157.5 11.4 78 599-693 241-318 (788)
19 PRK00411 cdc6 cell division co 99.4 7.3E-11 1.6E-15 133.0 28.0 319 180-513 27-374 (394)
20 PRK15370 E3 ubiquitin-protein 99.4 7.8E-13 1.7E-17 155.7 11.1 130 550-706 181-310 (754)
21 KOG4658 Apoptotic ATPase [Sign 99.4 9.8E-14 2.1E-18 165.8 2.7 330 566-946 519-866 (889)
22 KOG0617 Ras suppressor protein 99.3 6E-14 1.3E-18 126.6 -4.2 83 598-687 31-113 (264)
23 KOG0617 Ras suppressor protein 99.3 5.7E-14 1.2E-18 126.8 -4.8 161 566-745 29-190 (264)
24 KOG4237 Extracellular matrix p 99.3 9.3E-14 2E-18 142.0 -4.3 285 571-915 68-358 (498)
25 TIGR03015 pepcterm_ATPase puta 99.3 2E-10 4.3E-15 122.3 20.9 184 210-398 43-242 (269)
26 TIGR02928 orc1/cdc6 family rep 99.3 1.8E-09 3.9E-14 120.4 28.4 304 181-500 13-351 (365)
27 cd00116 LRR_RI Leucine-rich re 99.2 1.7E-12 3.7E-17 142.4 -1.4 12 903-914 307-318 (319)
28 PRK00080 ruvB Holliday junctio 99.2 2.2E-10 4.8E-15 124.8 13.4 280 182-499 24-310 (328)
29 PF01637 Arch_ATPase: Archaeal 99.2 1.6E-10 3.4E-15 120.5 11.5 198 185-393 1-233 (234)
30 TIGR00635 ruvB Holliday juncti 99.1 1.4E-09 3E-14 118.0 17.5 277 183-499 4-289 (305)
31 cd00116 LRR_RI Leucine-rich re 99.1 1.6E-12 3.5E-17 142.5 -5.6 95 592-687 15-119 (319)
32 COG2909 MalT ATP-dependent tra 99.1 8.2E-09 1.8E-13 117.3 21.5 299 182-526 18-340 (894)
33 PF05729 NACHT: NACHT domain 99.0 2.4E-09 5.2E-14 104.8 12.4 145 211-361 1-163 (166)
34 KOG4237 Extracellular matrix p 99.0 3E-11 6.4E-16 124.0 -2.9 131 544-687 64-199 (498)
35 PTZ00112 origin recognition co 99.0 1.6E-07 3.5E-12 107.7 25.9 217 181-398 753-986 (1164)
36 COG3899 Predicted ATPase [Gene 99.0 1.8E-08 3.9E-13 121.7 19.6 316 184-523 1-385 (849)
37 COG2256 MGS1 ATPase related to 98.8 2E-08 4.3E-13 104.8 11.1 171 181-389 28-207 (436)
38 PRK06893 DNA replication initi 98.8 1.4E-07 3E-12 96.7 16.0 156 210-398 39-207 (229)
39 KOG3207 Beta-tubulin folding c 98.8 2.3E-09 4.9E-14 112.0 2.0 213 626-914 118-337 (505)
40 KOG0532 Leucine-rich repeat (L 98.7 5.3E-10 1.2E-14 120.2 -3.5 102 596-706 94-195 (722)
41 KOG1259 Nischarin, modulator o 98.7 5.5E-09 1.2E-13 103.5 2.8 115 788-920 301-415 (490)
42 COG1474 CDC6 Cdc6-related prot 98.7 7.2E-06 1.6E-10 89.2 26.7 179 182-362 16-204 (366)
43 PF13401 AAA_22: AAA domain; P 98.7 3.4E-08 7.4E-13 92.2 7.7 118 209-328 3-125 (131)
44 PF14580 LRR_9: Leucine-rich r 98.7 1.2E-08 2.6E-13 97.9 4.5 127 567-709 16-149 (175)
45 KOG0532 Leucine-rich repeat (L 98.7 6.6E-10 1.4E-14 119.5 -4.6 125 600-738 75-199 (722)
46 PRK13342 recombination factor 98.7 3.2E-07 6.8E-12 103.2 15.8 178 183-396 12-198 (413)
47 TIGR03420 DnaA_homol_Hda DnaA 98.7 4.9E-07 1.1E-11 93.4 15.4 170 189-397 23-204 (226)
48 PRK14961 DNA polymerase III su 98.6 1E-06 2.3E-11 97.0 18.0 193 183-392 16-218 (363)
49 PRK05564 DNA polymerase III su 98.6 7E-07 1.5E-11 96.7 16.0 179 183-393 4-189 (313)
50 KOG1909 Ran GTPase-activating 98.6 2.8E-09 6.1E-14 108.4 -2.7 263 593-914 23-309 (382)
51 PF05496 RuvB_N: Holliday junc 98.6 4.7E-07 1E-11 88.5 12.6 184 182-398 23-225 (233)
52 COG4886 Leucine-rich repeat (L 98.6 3.6E-08 7.9E-13 111.3 5.6 103 596-706 112-215 (394)
53 PRK07003 DNA polymerase III su 98.6 4.1E-06 8.8E-11 96.2 21.1 182 183-395 16-222 (830)
54 PF13191 AAA_16: AAA ATPase do 98.6 1.3E-07 2.9E-12 94.3 8.4 77 184-265 1-82 (185)
55 TIGR02903 spore_lon_C ATP-depe 98.6 9E-06 1.9E-10 95.3 24.5 173 183-362 154-367 (615)
56 PRK04195 replication factor C 98.6 5.2E-06 1.1E-10 95.4 21.9 249 182-473 13-271 (482)
57 PF14580 LRR_9: Leucine-rich r 98.6 3.3E-08 7.2E-13 94.9 3.3 130 596-739 15-151 (175)
58 PRK12402 replication factor C 98.6 1.4E-06 3.1E-11 96.1 16.7 198 183-394 15-226 (337)
59 PRK14963 DNA polymerase III su 98.6 3E-07 6.6E-12 104.3 11.2 196 183-391 14-214 (504)
60 PTZ00202 tuzin; Provisional 98.6 3.3E-06 7.3E-11 90.1 17.9 170 178-361 257-434 (550)
61 PRK14960 DNA polymerase III su 98.5 1.6E-06 3.4E-11 98.5 15.9 193 183-393 15-218 (702)
62 PRK14949 DNA polymerase III su 98.5 1.7E-06 3.6E-11 101.4 16.5 183 183-394 16-220 (944)
63 PF13173 AAA_14: AAA domain 98.5 5.3E-07 1.2E-11 83.3 10.1 121 211-353 3-127 (128)
64 COG4886 Leucine-rich repeat (L 98.5 9.7E-08 2.1E-12 107.9 5.2 123 603-738 96-219 (394)
65 KOG1909 Ran GTPase-activating 98.5 2.1E-08 4.6E-13 102.2 -1.0 250 564-852 24-309 (382)
66 cd00009 AAA The AAA+ (ATPases 98.4 1.4E-06 3E-11 83.2 11.2 125 186-330 1-131 (151)
67 PLN03025 replication factor C 98.4 3.3E-06 7.1E-11 91.7 15.2 183 183-391 13-197 (319)
68 KOG2028 ATPase related to the 98.4 3.1E-06 6.8E-11 86.6 13.6 159 207-389 159-331 (554)
69 PRK08727 hypothetical protein; 98.4 7.4E-06 1.6E-10 84.2 16.7 148 211-391 42-201 (233)
70 PRK12323 DNA polymerase III su 98.4 3.7E-06 8.1E-11 95.2 15.3 200 183-394 16-225 (700)
71 KOG1259 Nischarin, modulator o 98.4 3.7E-08 7.9E-13 97.7 -0.6 130 598-741 282-412 (490)
72 PRK00440 rfc replication facto 98.4 5.2E-06 1.1E-10 90.8 16.3 183 183-393 17-202 (319)
73 PRK14957 DNA polymerase III su 98.4 6.4E-06 1.4E-10 93.8 16.6 185 183-395 16-222 (546)
74 PRK09112 DNA polymerase III su 98.4 4.3E-06 9.2E-11 90.7 14.4 198 182-395 22-241 (351)
75 TIGR00678 holB DNA polymerase 98.4 6.7E-06 1.5E-10 81.9 14.7 92 288-390 95-187 (188)
76 PRK06645 DNA polymerase III su 98.4 9.9E-06 2.1E-10 91.7 17.4 195 183-391 21-226 (507)
77 PRK14956 DNA polymerase III su 98.4 1.6E-06 3.4E-11 95.9 10.6 196 183-391 18-219 (484)
78 PRK07994 DNA polymerase III su 98.4 5.9E-06 1.3E-10 95.4 15.5 195 183-394 16-220 (647)
79 PRK07471 DNA polymerase III su 98.4 1E-05 2.2E-10 88.3 16.6 193 182-394 18-238 (365)
80 cd01128 rho_factor Transcripti 98.4 4.9E-07 1.1E-11 92.7 5.9 91 209-300 15-114 (249)
81 KOG3207 Beta-tubulin folding c 98.4 1.8E-07 4E-12 98.1 2.8 149 547-706 121-277 (505)
82 PRK08084 DNA replication initi 98.4 1.5E-05 3.2E-10 82.1 16.7 155 210-397 45-212 (235)
83 PRK07940 DNA polymerase III su 98.4 6.5E-06 1.4E-10 90.5 14.8 181 183-394 5-213 (394)
84 PRK08691 DNA polymerase III su 98.3 2.7E-06 6E-11 97.6 11.9 195 183-394 16-220 (709)
85 PRK14962 DNA polymerase III su 98.3 8E-06 1.7E-10 92.1 15.5 202 183-412 14-240 (472)
86 PRK14964 DNA polymerase III su 98.3 1.1E-05 2.4E-10 90.4 16.4 182 183-391 13-214 (491)
87 PRK05896 DNA polymerase III su 98.3 9.4E-06 2E-10 92.3 15.9 195 183-395 16-222 (605)
88 PRK08903 DnaA regulatory inact 98.3 1.4E-05 3.1E-10 82.3 16.0 152 210-398 42-203 (227)
89 PRK05642 DNA replication initi 98.3 1.9E-05 4.2E-10 81.1 16.7 156 210-398 45-212 (234)
90 PRK14951 DNA polymerase III su 98.3 1.2E-05 2.5E-10 92.9 15.9 197 183-394 16-225 (618)
91 TIGR02397 dnaX_nterm DNA polym 98.3 2.6E-05 5.7E-10 86.7 18.4 186 182-395 13-219 (355)
92 KOG2120 SCF ubiquitin ligase, 98.3 1.7E-08 3.6E-13 100.2 -6.5 143 721-882 227-374 (419)
93 PRK14958 DNA polymerase III su 98.3 1.2E-05 2.7E-10 91.6 15.4 184 183-393 16-219 (509)
94 PRK09376 rho transcription ter 98.3 2E-06 4.4E-11 91.6 8.3 101 194-300 158-267 (416)
95 PRK13341 recombination factor 98.3 4.9E-06 1.1E-10 98.3 12.3 174 183-390 28-213 (725)
96 PRK09087 hypothetical protein; 98.3 2E-05 4.3E-10 80.2 15.2 142 210-395 44-196 (226)
97 PF00308 Bac_DnaA: Bacterial d 98.3 2.2E-05 4.9E-10 79.6 15.4 188 182-394 8-208 (219)
98 PF05621 TniB: Bacterial TniB 98.3 1.4E-05 2.9E-10 82.4 13.7 196 190-389 44-256 (302)
99 KOG2227 Pre-initiation complex 98.3 2E-05 4.2E-10 84.3 14.9 214 181-396 148-374 (529)
100 PF13855 LRR_8: Leucine rich r 98.2 1.5E-06 3.2E-11 68.3 4.8 57 601-663 2-60 (61)
101 COG2255 RuvB Holliday junction 98.2 4.8E-05 1E-09 76.1 16.3 181 183-396 26-225 (332)
102 PRK14955 DNA polymerase III su 98.2 1.7E-05 3.7E-10 88.6 15.0 201 183-393 16-227 (397)
103 PLN03150 hypothetical protein; 98.2 2.6E-06 5.6E-11 100.8 8.3 93 601-698 419-512 (623)
104 PLN03150 hypothetical protein; 98.2 1.8E-06 3.9E-11 102.1 6.7 76 631-706 420-496 (623)
105 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.6E-11 68.0 4.2 58 629-687 1-60 (61)
106 PRK14969 DNA polymerase III su 98.2 3.6E-05 7.9E-10 88.5 16.9 180 183-394 16-221 (527)
107 KOG0989 Replication factor C, 98.2 1.8E-05 4E-10 79.9 12.2 187 182-389 35-225 (346)
108 PRK14087 dnaA chromosomal repl 98.2 4.2E-05 9.1E-10 86.3 16.5 170 210-397 141-322 (450)
109 COG3903 Predicted ATPase [Gene 98.2 3.8E-06 8.3E-11 88.8 7.2 292 209-524 13-314 (414)
110 KOG4341 F-box protein containi 98.2 1.2E-07 2.5E-12 99.0 -4.0 294 600-943 138-442 (483)
111 PF14516 AAA_35: AAA-like doma 98.1 0.00049 1.1E-08 74.8 23.6 204 181-401 9-246 (331)
112 PRK07764 DNA polymerase III su 98.1 4.8E-05 1E-09 91.2 16.8 192 183-391 15-218 (824)
113 PRK09111 DNA polymerase III su 98.1 4.5E-05 9.8E-10 88.4 16.1 198 183-394 24-233 (598)
114 PRK14952 DNA polymerase III su 98.1 6.9E-05 1.5E-09 86.3 17.2 199 183-398 13-224 (584)
115 PRK14959 DNA polymerase III su 98.1 4.7E-05 1E-09 87.3 15.7 199 183-398 16-225 (624)
116 KOG2543 Origin recognition com 98.1 9.7E-05 2.1E-09 77.0 16.4 171 182-360 5-192 (438)
117 PRK07133 DNA polymerase III su 98.1 7.4E-05 1.6E-09 87.0 17.3 190 183-393 18-218 (725)
118 PRK14970 DNA polymerase III su 98.1 7.2E-05 1.6E-09 83.2 16.8 182 183-391 17-206 (367)
119 KOG4341 F-box protein containi 98.1 1.7E-07 3.8E-12 97.7 -3.7 309 570-934 138-459 (483)
120 PRK14950 DNA polymerase III su 98.1 3.7E-05 8.1E-10 90.1 14.9 196 183-394 16-221 (585)
121 PRK08451 DNA polymerase III su 98.1 0.00012 2.7E-09 83.0 17.7 181 183-394 14-218 (535)
122 PRK11331 5-methylcytosine-spec 98.0 3.8E-05 8.1E-10 84.1 12.5 120 183-314 175-298 (459)
123 PRK14954 DNA polymerase III su 98.0 0.00013 2.9E-09 84.6 17.7 197 183-389 16-223 (620)
124 PRK14953 DNA polymerase III su 98.0 0.00016 3.6E-09 82.1 18.1 185 183-395 16-221 (486)
125 PHA02544 44 clamp loader, smal 98.0 5.3E-05 1.1E-09 82.6 13.6 149 182-359 20-171 (316)
126 TIGR00362 DnaA chromosomal rep 98.0 0.00026 5.6E-09 79.8 19.1 160 210-393 136-309 (405)
127 TIGR00767 rho transcription te 98.0 8.6E-06 1.9E-10 87.4 6.6 91 209-300 167-266 (415)
128 TIGR01242 26Sp45 26S proteasom 98.0 3.5E-05 7.5E-10 85.4 11.7 182 181-388 120-328 (364)
129 PRK14971 DNA polymerase III su 98.0 0.00019 4.1E-09 84.0 17.9 182 183-392 17-220 (614)
130 CHL00181 cbbX CbbX; Provisiona 98.0 0.00039 8.4E-09 73.6 18.3 137 211-363 60-211 (287)
131 KOG2120 SCF ubiquitin ligase, 98.0 2.5E-07 5.5E-12 92.0 -5.3 83 601-687 186-271 (419)
132 PRK14948 DNA polymerase III su 98.0 0.00023 5E-09 83.2 17.6 197 183-394 16-222 (620)
133 PRK06305 DNA polymerase III su 98.0 0.00016 3.5E-09 81.6 15.8 178 183-389 17-217 (451)
134 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 57.9 4.0 40 629-669 1-40 (44)
135 TIGR03345 VI_ClpV1 type VI sec 97.9 9.5E-05 2.1E-09 90.0 14.6 156 183-360 187-362 (852)
136 KOG0531 Protein phosphatase 1, 97.9 1.1E-06 2.5E-11 99.2 -1.9 101 596-706 91-192 (414)
137 KOG2982 Uncharacterized conser 97.9 4.1E-06 8.8E-11 83.6 1.9 205 594-849 65-287 (418)
138 PF05673 DUF815: Protein of un 97.9 0.00046 1E-08 69.0 16.3 122 180-328 24-149 (249)
139 PRK06620 hypothetical protein; 97.9 0.00033 7.2E-09 70.7 15.7 138 211-394 45-189 (214)
140 COG0593 DnaA ATPase involved i 97.9 0.00057 1.2E-08 74.2 17.7 162 182-365 87-261 (408)
141 PRK14088 dnaA chromosomal repl 97.9 0.00056 1.2E-08 77.2 18.6 162 210-393 130-304 (440)
142 PRK07399 DNA polymerase III su 97.9 0.00072 1.6E-08 72.4 18.3 195 184-394 5-221 (314)
143 KOG0531 Protein phosphatase 1, 97.9 2.9E-06 6.2E-11 96.0 -0.0 81 597-686 115-196 (414)
144 PRK12422 chromosomal replicati 97.9 0.00052 1.1E-08 77.2 17.8 154 210-387 141-306 (445)
145 PRK05707 DNA polymerase III su 97.9 0.00025 5.5E-09 76.3 14.7 97 288-394 105-203 (328)
146 TIGR02881 spore_V_K stage V sp 97.9 0.00028 6E-09 74.3 14.8 163 184-362 7-192 (261)
147 PRK06647 DNA polymerase III su 97.9 0.0004 8.7E-09 80.3 17.2 194 183-393 16-219 (563)
148 PRK14086 dnaA chromosomal repl 97.9 0.0009 1.9E-08 76.6 19.5 160 211-392 315-486 (617)
149 PRK00149 dnaA chromosomal repl 97.8 0.00071 1.5E-08 77.3 18.8 160 210-393 148-321 (450)
150 TIGR02639 ClpA ATP-dependent C 97.8 0.00016 3.5E-09 87.4 14.2 157 183-361 182-358 (731)
151 PRK14965 DNA polymerase III su 97.8 0.00029 6.3E-09 82.2 15.6 195 183-394 16-221 (576)
152 TIGR02880 cbbX_cfxQ probable R 97.8 0.00042 9E-09 73.5 14.9 135 212-362 60-209 (284)
153 PRK15386 type III secretion pr 97.8 8.2E-05 1.8E-09 80.5 9.3 64 596-670 48-112 (426)
154 PRK05563 DNA polymerase III su 97.8 0.00075 1.6E-08 78.4 17.8 193 183-392 16-218 (559)
155 PF12799 LRR_4: Leucine Rich r 97.8 2.6E-05 5.6E-10 55.8 3.5 41 600-646 1-41 (44)
156 PRK03992 proteasome-activating 97.7 0.00019 4.2E-09 79.7 11.8 180 182-387 130-336 (389)
157 COG3267 ExeA Type II secretory 97.7 0.0014 3.1E-08 65.2 16.1 181 209-396 50-247 (269)
158 CHL00095 clpC Clp protease ATP 97.7 0.0003 6.6E-09 86.1 13.9 157 183-360 179-353 (821)
159 PF00004 AAA: ATPase family as 97.7 0.00012 2.6E-09 68.2 7.7 97 213-329 1-112 (132)
160 KOG1859 Leucine-rich repeat pr 97.7 2.6E-06 5.6E-11 94.9 -4.4 82 596-686 183-264 (1096)
161 KOG3665 ZYG-1-like serine/thre 97.6 3.4E-05 7.5E-10 90.9 3.8 129 547-688 122-262 (699)
162 TIGR00763 lon ATP-dependent pr 97.6 0.0022 4.8E-08 78.1 19.2 166 183-361 320-505 (775)
163 PRK06871 DNA polymerase III su 97.6 0.0017 3.8E-08 69.3 15.6 176 192-391 11-200 (325)
164 PRK08769 DNA polymerase III su 97.6 0.0012 2.6E-08 70.5 14.3 96 288-395 112-209 (319)
165 PRK08116 hypothetical protein; 97.6 0.0004 8.7E-09 72.8 10.6 104 211-329 115-221 (268)
166 PRK11034 clpA ATP-dependent Cl 97.6 0.00063 1.4E-08 81.2 13.4 158 183-361 186-362 (758)
167 KOG0991 Replication factor C, 97.6 0.00088 1.9E-08 64.9 11.7 104 182-312 26-136 (333)
168 COG0466 Lon ATP-dependent Lon 97.6 0.0021 4.6E-08 73.0 16.3 167 181-361 321-508 (782)
169 PRK06090 DNA polymerase III su 97.5 0.0021 4.5E-08 68.5 15.5 164 192-394 12-201 (319)
170 PRK15386 type III secretion pr 97.5 0.0003 6.5E-09 76.3 9.2 32 903-937 156-187 (426)
171 PRK10536 hypothetical protein; 97.5 0.0012 2.6E-08 67.0 12.8 135 182-329 54-213 (262)
172 PF13177 DNA_pol3_delta2: DNA 97.5 0.0014 3E-08 63.0 12.3 139 187-349 1-162 (162)
173 TIGR03689 pup_AAA proteasome A 97.5 0.0023 4.9E-08 72.5 15.5 167 183-361 182-378 (512)
174 smart00382 AAA ATPases associa 97.5 0.00052 1.1E-08 64.7 9.1 88 211-302 3-91 (148)
175 TIGR00602 rad24 checkpoint pro 97.5 0.00066 1.4E-08 78.9 11.3 53 181-234 82-134 (637)
176 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0012 2.6E-08 81.2 13.9 156 183-361 173-349 (852)
177 PRK10787 DNA-binding ATP-depen 97.4 0.0015 3.3E-08 78.7 14.4 167 182-361 321-506 (784)
178 PRK08058 DNA polymerase III su 97.4 0.0016 3.6E-08 70.7 13.3 163 185-360 7-181 (329)
179 PRK10865 protein disaggregatio 97.4 0.0017 3.6E-08 79.7 14.4 157 183-361 178-354 (857)
180 PRK08181 transposase; Validate 97.4 0.00059 1.3E-08 71.0 8.7 101 211-329 107-209 (269)
181 PRK07952 DNA replication prote 97.4 0.0011 2.5E-08 67.8 10.4 103 210-328 99-204 (244)
182 PRK08939 primosomal protein Dn 97.3 0.00089 1.9E-08 71.4 9.6 122 187-328 135-260 (306)
183 PF10443 RNA12: RNA12 protein; 97.3 0.01 2.2E-07 64.4 17.5 205 188-405 1-289 (431)
184 CHL00176 ftsH cell division pr 97.3 0.0033 7.3E-08 73.7 14.8 179 183-386 183-386 (638)
185 KOG2982 Uncharacterized conser 97.3 9.2E-05 2E-09 74.2 1.6 87 757-852 69-157 (418)
186 COG1373 Predicted ATPase (AAA+ 97.3 0.0027 5.9E-08 70.6 13.3 148 212-393 39-191 (398)
187 COG0542 clpA ATP-binding subun 97.3 0.0087 1.9E-07 70.2 17.6 123 183-316 491-620 (786)
188 PTZ00361 26 proteosome regulat 97.3 0.00088 1.9E-08 74.6 9.3 160 183-362 183-368 (438)
189 PRK12377 putative replication 97.3 0.00058 1.3E-08 70.1 7.2 101 211-328 102-205 (248)
190 PRK10865 protein disaggregatio 97.3 0.0029 6.3E-08 77.5 14.5 138 183-328 568-720 (857)
191 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0029 6.2E-08 78.0 14.4 136 183-328 565-717 (852)
192 KOG2004 Mitochondrial ATP-depe 97.3 0.011 2.3E-07 67.2 17.1 167 181-361 409-596 (906)
193 PF04665 Pox_A32: Poxvirus A32 97.3 0.0036 7.8E-08 63.3 12.4 36 211-248 14-49 (241)
194 TIGR02639 ClpA ATP-dependent C 97.2 0.0031 6.8E-08 76.4 13.9 121 183-316 454-580 (731)
195 PF01695 IstB_IS21: IstB-like 97.2 0.00047 1E-08 67.3 5.5 102 210-329 47-150 (178)
196 PRK07993 DNA polymerase III su 97.2 0.0059 1.3E-07 66.1 14.5 177 192-392 11-202 (334)
197 PTZ00454 26S protease regulato 97.2 0.0027 5.8E-08 70.3 12.0 160 182-361 144-329 (398)
198 PRK06526 transposase; Provisio 97.2 0.00076 1.6E-08 69.8 7.3 100 211-329 99-201 (254)
199 PRK06964 DNA polymerase III su 97.2 0.0072 1.6E-07 65.1 14.7 94 288-395 131-226 (342)
200 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0086 1.9E-07 62.9 15.1 111 212-329 23-161 (262)
201 COG5238 RNA1 Ran GTPase-activa 97.2 9.4E-05 2E-09 73.2 0.0 91 596-687 26-131 (388)
202 PRK08118 topology modulation p 97.2 0.0002 4.3E-09 69.3 2.2 34 212-245 3-37 (167)
203 PRK06921 hypothetical protein; 97.1 0.0025 5.4E-08 66.7 10.2 100 210-329 117-225 (266)
204 PF07693 KAP_NTPase: KAP famil 97.1 0.019 4.2E-07 62.8 17.7 169 189-360 2-262 (325)
205 KOG3665 ZYG-1-like serine/thre 97.1 0.00024 5.1E-09 84.0 2.4 109 569-687 121-231 (699)
206 KOG2228 Origin recognition com 97.1 0.0063 1.4E-07 62.8 12.1 176 182-361 23-219 (408)
207 COG5238 RNA1 Ran GTPase-activa 97.1 0.0001 2.2E-09 73.0 -0.6 98 565-667 25-134 (388)
208 KOG4579 Leucine-rich repeat (L 97.1 0.0001 2.2E-09 65.3 -0.5 73 592-671 69-141 (177)
209 PF02562 PhoH: PhoH-like prote 97.1 0.0018 3.9E-08 63.9 8.0 131 187-329 4-156 (205)
210 PRK04296 thymidine kinase; Pro 97.1 0.0017 3.7E-08 64.5 7.8 113 211-330 3-117 (190)
211 PRK08699 DNA polymerase III su 97.1 0.0036 7.7E-08 67.5 10.8 72 288-360 112-184 (325)
212 TIGR03345 VI_ClpV1 type VI sec 97.0 0.002 4.4E-08 78.6 9.8 136 183-328 566-718 (852)
213 PRK12608 transcription termina 97.0 0.0051 1.1E-07 66.1 11.3 103 191-299 119-230 (380)
214 PRK09183 transposase/IS protei 97.0 0.0032 6.9E-08 65.7 9.5 101 211-329 103-206 (259)
215 PRK13531 regulatory ATPase Rav 97.0 0.0031 6.6E-08 70.1 9.6 153 184-360 21-193 (498)
216 COG0470 HolB ATPase involved i 97.0 0.0051 1.1E-07 67.4 11.7 145 184-349 2-169 (325)
217 PHA00729 NTP-binding motif con 97.0 0.0049 1.1E-07 61.6 10.2 25 209-233 16-40 (226)
218 KOG1644 U2-associated snRNP A' 97.0 0.00084 1.8E-08 64.0 4.5 105 818-937 42-150 (233)
219 KOG4579 Leucine-rich repeat (L 97.0 0.00016 3.5E-09 64.1 -0.2 84 596-686 49-133 (177)
220 KOG1859 Leucine-rich repeat pr 97.0 4.2E-05 9.1E-10 85.6 -5.0 128 545-688 162-291 (1096)
221 PRK04132 replication factor C 96.9 0.017 3.8E-07 69.2 16.1 156 218-394 574-731 (846)
222 KOG1644 U2-associated snRNP A' 96.9 0.00094 2E-08 63.7 4.2 92 787-881 57-150 (233)
223 PF07728 AAA_5: AAA domain (dy 96.9 0.00048 1E-08 64.7 2.4 89 213-314 2-90 (139)
224 TIGR01241 FtsH_fam ATP-depende 96.9 0.013 2.8E-07 67.9 14.2 180 183-387 55-259 (495)
225 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0011 2.3E-08 71.0 4.6 52 183-234 51-102 (361)
226 COG1484 DnaC DNA replication p 96.8 0.0026 5.6E-08 66.0 7.2 81 210-307 105-185 (254)
227 KOG1514 Origin recognition com 96.8 0.037 7.9E-07 63.0 16.3 209 183-396 396-623 (767)
228 PRK11034 clpA ATP-dependent Cl 96.8 0.01 2.2E-07 71.2 12.8 122 184-316 459-584 (758)
229 TIGR02902 spore_lonB ATP-depen 96.8 0.0052 1.1E-07 71.2 10.1 45 183-233 65-109 (531)
230 PRK06835 DNA replication prote 96.8 0.0044 9.5E-08 66.7 8.8 103 211-329 184-289 (329)
231 COG2607 Predicted ATPase (AAA+ 96.8 0.045 9.8E-07 54.0 14.6 122 181-329 58-183 (287)
232 TIGR02237 recomb_radB DNA repa 96.8 0.0044 9.6E-08 62.9 8.4 48 209-259 11-58 (209)
233 PRK11889 flhF flagellar biosyn 96.8 0.018 3.8E-07 62.2 12.7 104 209-314 240-347 (436)
234 PRK07261 topology modulation p 96.8 0.0026 5.7E-08 61.9 6.1 66 212-300 2-68 (171)
235 CHL00095 clpC Clp protease ATP 96.7 0.0052 1.1E-07 75.5 9.9 136 183-328 509-661 (821)
236 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.013 2.8E-07 55.4 9.9 114 211-330 3-139 (159)
237 COG2812 DnaX DNA polymerase II 96.7 0.0037 8.1E-08 70.2 7.5 189 183-389 16-215 (515)
238 PRK09361 radB DNA repair and r 96.7 0.0083 1.8E-07 61.6 9.4 46 209-257 22-67 (225)
239 COG1222 RPT1 ATP-dependent 26S 96.7 0.014 3.1E-07 61.0 10.7 191 183-399 151-372 (406)
240 COG1875 NYN ribonuclease and A 96.6 0.0095 2.1E-07 62.3 9.0 136 186-330 227-389 (436)
241 PRK05541 adenylylsulfate kinas 96.6 0.0039 8.5E-08 61.2 6.2 37 209-247 6-42 (176)
242 KOG1969 DNA replication checkp 96.5 0.0083 1.8E-07 68.2 8.9 88 207-314 323-412 (877)
243 KOG0741 AAA+-type ATPase [Post 96.5 0.045 9.7E-07 60.0 13.9 152 207-384 535-704 (744)
244 cd01120 RecA-like_NTPases RecA 96.5 0.014 3E-07 56.5 9.6 40 212-253 1-40 (165)
245 PF00448 SRP54: SRP54-type pro 96.5 0.01 2.2E-07 58.9 8.5 88 211-300 2-94 (196)
246 PF00158 Sigma54_activat: Sigm 96.5 0.0051 1.1E-07 59.4 6.2 131 185-329 1-144 (168)
247 cd00983 recA RecA is a bacter 96.5 0.0098 2.1E-07 63.3 8.7 84 209-299 54-143 (325)
248 KOG2123 Uncharacterized conser 96.5 0.00019 4.1E-09 71.4 -3.8 99 600-707 19-124 (388)
249 cd01394 radB RadB. The archaea 96.5 0.015 3.2E-07 59.5 9.7 43 209-253 18-60 (218)
250 TIGR03499 FlhF flagellar biosy 96.5 0.014 3E-07 61.9 9.6 88 209-298 193-281 (282)
251 cd01393 recA_like RecA is a b 96.4 0.019 4.1E-07 59.1 10.3 88 209-299 18-124 (226)
252 PF14532 Sigma54_activ_2: Sigm 96.4 0.002 4.3E-08 60.3 2.6 108 186-329 1-110 (138)
253 KOG0744 AAA+-type ATPase [Post 96.4 0.043 9.4E-07 56.4 12.0 80 210-299 177-260 (423)
254 PF13207 AAA_17: AAA domain; P 96.4 0.0023 5E-08 58.4 2.9 22 212-233 1-22 (121)
255 COG2884 FtsE Predicted ATPase 96.4 0.054 1.2E-06 51.6 11.7 124 210-336 28-204 (223)
256 PF08423 Rad51: Rad51; InterP 96.4 0.0084 1.8E-07 62.4 7.3 57 210-267 38-98 (256)
257 COG1136 SalX ABC-type antimicr 96.4 0.035 7.6E-07 55.5 11.2 82 255-336 119-210 (226)
258 PRK07132 DNA polymerase III su 96.3 0.17 3.7E-06 53.7 16.9 157 209-393 17-184 (299)
259 KOG2035 Replication factor C, 96.3 0.015 3.2E-07 58.5 8.2 198 185-394 15-228 (351)
260 COG4608 AppF ABC-type oligopep 96.3 0.024 5.2E-07 57.6 10.0 127 209-338 38-179 (268)
261 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.012 2.7E-07 60.9 8.4 56 209-265 18-77 (235)
262 TIGR02238 recomb_DMC1 meiotic 96.3 0.016 3.4E-07 62.1 9.1 59 209-268 95-157 (313)
263 TIGR02012 tigrfam_recA protein 96.3 0.014 3.1E-07 62.0 8.8 84 209-299 54-143 (321)
264 COG0542 clpA ATP-binding subun 96.3 0.016 3.5E-07 68.1 9.8 156 183-360 170-345 (786)
265 PRK11608 pspF phage shock prot 96.3 0.024 5.3E-07 61.5 10.7 134 184-329 7-151 (326)
266 COG1126 GlnQ ABC-type polar am 96.3 0.04 8.7E-07 53.7 10.7 125 210-337 28-204 (240)
267 cd03214 ABC_Iron-Siderophores_ 96.3 0.037 8.1E-07 54.5 11.0 120 210-333 25-162 (180)
268 PRK12723 flagellar biosynthesi 96.3 0.029 6.3E-07 61.6 11.1 91 209-301 173-266 (388)
269 PRK05703 flhF flagellar biosyn 96.3 0.05 1.1E-06 61.0 13.2 89 210-300 221-310 (424)
270 PRK14722 flhF flagellar biosyn 96.3 0.016 3.4E-07 63.1 8.9 90 210-301 137-227 (374)
271 PRK12724 flagellar biosynthesi 96.3 0.027 5.8E-07 61.7 10.5 86 209-298 222-308 (432)
272 cd01133 F1-ATPase_beta F1 ATP 96.3 0.025 5.4E-07 58.5 9.8 88 210-299 69-173 (274)
273 TIGR01243 CDC48 AAA family ATP 96.2 0.027 5.8E-07 68.7 11.8 181 183-388 178-381 (733)
274 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.034 7.3E-07 52.4 10.0 105 211-334 27-132 (144)
275 PLN00020 ribulose bisphosphate 96.2 0.09 1.9E-06 56.2 13.9 27 208-234 146-172 (413)
276 PTZ00494 tuzin-like protein; P 96.2 0.68 1.5E-05 50.4 20.2 169 179-361 367-544 (664)
277 PRK14974 cell division protein 96.2 0.06 1.3E-06 58.0 12.8 89 209-301 139-234 (336)
278 PRK06067 flagellar accessory p 96.2 0.026 5.5E-07 58.4 9.8 86 209-299 24-130 (234)
279 PRK09354 recA recombinase A; P 96.2 0.021 4.5E-07 61.4 9.1 84 209-299 59-148 (349)
280 PRK15455 PrkA family serine pr 96.2 0.0033 7.1E-08 70.7 3.0 50 184-233 77-126 (644)
281 PF13671 AAA_33: AAA domain; P 96.1 0.015 3.3E-07 54.8 7.2 21 212-232 1-21 (143)
282 PF13604 AAA_30: AAA domain; P 96.1 0.0064 1.4E-07 60.7 4.7 104 211-329 19-131 (196)
283 PRK12727 flagellar biosynthesi 96.1 0.026 5.6E-07 63.5 9.6 90 209-300 349-439 (559)
284 TIGR02239 recomb_RAD51 DNA rep 96.1 0.033 7.1E-07 59.9 10.2 58 209-267 95-156 (316)
285 PF05659 RPW8: Arabidopsis bro 96.1 0.089 1.9E-06 49.0 11.6 83 2-84 3-86 (147)
286 PLN03187 meiotic recombination 96.1 0.033 7.1E-07 60.1 10.1 59 209-268 125-187 (344)
287 PF03215 Rad17: Rad17 cell cyc 96.1 0.049 1.1E-06 62.4 12.0 60 183-247 19-78 (519)
288 KOG2739 Leucine-rich acidic nu 96.1 0.0031 6.8E-08 63.0 2.1 60 627-687 63-127 (260)
289 TIGR01243 CDC48 AAA family ATP 96.1 0.096 2.1E-06 63.9 15.3 181 183-388 453-657 (733)
290 PRK06696 uridine kinase; Valid 96.1 0.015 3.4E-07 59.4 7.3 43 188-233 3-45 (223)
291 PRK13695 putative NTPase; Prov 96.1 0.011 2.4E-07 57.9 5.9 23 212-234 2-24 (174)
292 TIGR02974 phageshock_pspF psp 96.0 0.028 6.1E-07 61.0 9.5 132 185-328 1-143 (329)
293 TIGR01817 nifA Nif-specific re 96.0 0.037 7.9E-07 64.9 11.1 136 181-329 194-341 (534)
294 cd03247 ABCC_cytochrome_bd The 96.0 0.032 6.9E-07 54.9 9.0 117 211-333 29-161 (178)
295 PRK00771 signal recognition pa 96.0 0.066 1.4E-06 59.9 12.1 88 209-299 94-185 (437)
296 CHL00195 ycf46 Ycf46; Provisio 95.9 0.069 1.5E-06 60.8 12.3 133 210-362 259-406 (489)
297 cd03222 ABC_RNaseL_inhibitor T 95.9 0.053 1.1E-06 52.8 9.9 103 211-334 26-137 (177)
298 PF00560 LRR_1: Leucine Rich R 95.9 0.004 8.7E-08 36.9 1.3 19 631-649 2-20 (22)
299 cd03115 SRP The signal recogni 95.9 0.055 1.2E-06 52.9 10.2 87 212-300 2-93 (173)
300 COG0468 RecA RecA/RadA recombi 95.9 0.032 7E-07 58.0 8.7 89 208-299 58-151 (279)
301 cd03228 ABCC_MRP_Like The MRP 95.9 0.041 9E-07 53.6 9.2 117 211-334 29-160 (171)
302 KOG1947 Leucine rich repeat pr 95.9 0.00097 2.1E-08 77.8 -2.8 34 628-661 187-223 (482)
303 PRK05800 cobU adenosylcobinami 95.9 0.01 2.3E-07 57.3 4.7 80 212-298 3-85 (170)
304 KOG1532 GTPase XAB1, interacts 95.8 0.035 7.6E-07 55.6 8.2 91 207-298 16-124 (366)
305 KOG2739 Leucine-rich acidic nu 95.8 0.0049 1.1E-07 61.7 2.3 110 626-739 40-154 (260)
306 COG1121 ZnuC ABC-type Mn/Zn tr 95.8 0.087 1.9E-06 53.6 11.1 122 211-334 31-204 (254)
307 PRK04301 radA DNA repair and r 95.8 0.051 1.1E-06 58.9 10.3 57 209-266 101-161 (317)
308 cd03281 ABC_MSH5_euk MutS5 hom 95.8 0.021 4.6E-07 57.7 6.8 122 210-336 29-161 (213)
309 TIGR00959 ffh signal recogniti 95.8 0.069 1.5E-06 59.6 11.4 91 209-300 98-193 (428)
310 cd03216 ABC_Carb_Monos_I This 95.8 0.028 6.1E-07 54.3 7.3 116 211-333 27-146 (163)
311 PRK12726 flagellar biosynthesi 95.8 0.097 2.1E-06 56.5 11.7 90 209-300 205-296 (407)
312 PLN03186 DNA repair protein RA 95.8 0.059 1.3E-06 58.3 10.3 59 209-268 122-184 (342)
313 cd03223 ABCD_peroxisomal_ALDP 95.7 0.066 1.4E-06 51.9 9.8 115 211-333 28-152 (166)
314 PRK05917 DNA polymerase III su 95.7 0.19 4.1E-06 52.7 13.5 130 192-348 6-154 (290)
315 cd01131 PilT Pilus retraction 95.7 0.019 4.1E-07 57.5 6.0 111 211-333 2-113 (198)
316 TIGR00708 cobA cob(I)alamin ad 95.7 0.09 2E-06 50.4 10.2 119 210-330 5-141 (173)
317 cd03238 ABC_UvrA The excision 95.7 0.036 7.9E-07 53.9 7.7 114 210-333 21-153 (176)
318 PTZ00035 Rad51 protein; Provis 95.7 0.059 1.3E-06 58.5 10.1 58 209-267 117-178 (337)
319 PF07724 AAA_2: AAA domain (Cd 95.7 0.0078 1.7E-07 58.3 3.0 92 210-315 3-105 (171)
320 PRK08533 flagellar accessory p 95.7 0.081 1.8E-06 54.2 10.6 48 210-261 24-71 (230)
321 PRK15429 formate hydrogenlyase 95.7 0.038 8.3E-07 66.9 9.5 135 183-329 376-521 (686)
322 PRK10867 signal recognition pa 95.7 0.057 1.2E-06 60.2 10.0 26 209-234 99-124 (433)
323 cd00544 CobU Adenosylcobinamid 95.7 0.039 8.4E-07 53.3 7.7 78 213-298 2-82 (169)
324 TIGR00064 ftsY signal recognit 95.6 0.072 1.6E-06 56.0 10.1 90 209-300 71-165 (272)
325 PF00485 PRK: Phosphoribulokin 95.6 0.049 1.1E-06 54.4 8.3 80 212-293 1-87 (194)
326 KOG2123 Uncharacterized conser 95.5 0.0018 4E-08 64.6 -1.8 100 569-683 18-124 (388)
327 cd01125 repA Hexameric Replica 95.5 0.11 2.3E-06 54.0 11.1 145 212-356 3-199 (239)
328 cd01122 GP4d_helicase GP4d_hel 95.5 0.12 2.7E-06 54.7 11.9 53 210-265 30-82 (271)
329 cd02025 PanK Pantothenate kina 95.5 0.049 1.1E-06 55.3 8.3 75 212-287 1-76 (220)
330 TIGR02236 recomb_radA DNA repa 95.5 0.073 1.6E-06 57.6 10.1 58 209-267 94-155 (310)
331 TIGR00554 panK_bact pantothena 95.5 0.067 1.4E-06 56.4 9.3 80 208-289 60-141 (290)
332 PHA02244 ATPase-like protein 95.5 0.051 1.1E-06 58.4 8.3 22 212-233 121-142 (383)
333 PRK05439 pantothenate kinase; 95.4 0.07 1.5E-06 56.6 9.3 80 207-290 83-166 (311)
334 PRK08233 hypothetical protein; 95.4 0.038 8.3E-07 54.6 7.1 24 210-233 3-26 (182)
335 KOG0735 AAA+-type ATPase [Post 95.4 0.047 1E-06 62.1 8.1 73 209-299 430-504 (952)
336 cd03230 ABC_DR_subfamily_A Thi 95.4 0.083 1.8E-06 51.6 9.2 119 210-334 26-160 (173)
337 COG1618 Predicted nucleotide k 95.4 0.018 4E-07 53.1 4.0 24 211-234 6-29 (179)
338 cd03246 ABCC_Protease_Secretio 95.4 0.051 1.1E-06 53.1 7.6 116 211-333 29-160 (173)
339 TIGR01650 PD_CobS cobaltochela 95.3 0.32 6.9E-06 51.8 13.7 61 184-257 46-106 (327)
340 COG1223 Predicted ATPase (AAA+ 95.3 0.16 3.5E-06 50.7 10.5 158 183-361 121-297 (368)
341 cd01124 KaiC KaiC is a circadi 95.3 0.054 1.2E-06 53.7 7.7 44 213-260 2-45 (187)
342 COG0572 Udk Uridine kinase [Nu 95.3 0.036 7.7E-07 54.8 6.1 78 209-290 7-85 (218)
343 PRK07667 uridine kinase; Provi 95.3 0.041 9E-07 54.8 6.7 39 192-234 3-41 (193)
344 PRK14721 flhF flagellar biosyn 95.2 0.11 2.3E-06 57.7 10.2 89 209-299 190-279 (420)
345 PRK05022 anaerobic nitric oxid 95.2 0.057 1.2E-06 62.7 8.6 136 182-329 186-332 (509)
346 COG4088 Predicted nucleotide k 95.2 0.069 1.5E-06 51.4 7.3 24 211-234 2-25 (261)
347 TIGR03877 thermo_KaiC_1 KaiC d 95.2 0.14 3.1E-06 52.8 10.6 49 209-261 20-68 (237)
348 KOG1051 Chaperone HSP104 and r 95.2 0.13 2.8E-06 61.7 11.2 122 184-316 563-687 (898)
349 TIGR03881 KaiC_arch_4 KaiC dom 95.2 0.12 2.7E-06 53.1 10.2 115 209-328 19-165 (229)
350 COG1102 Cmk Cytidylate kinase 95.2 0.038 8.3E-07 51.0 5.3 44 212-268 2-45 (179)
351 PRK06995 flhF flagellar biosyn 95.1 0.098 2.1E-06 59.0 9.7 88 210-299 256-344 (484)
352 PF12775 AAA_7: P-loop contain 95.1 0.017 3.6E-07 60.7 3.5 96 193-307 23-118 (272)
353 PTZ00301 uridine kinase; Provi 95.1 0.042 9E-07 55.1 6.0 25 209-233 2-26 (210)
354 PRK09270 nucleoside triphospha 95.1 0.092 2E-06 54.0 8.8 27 208-234 31-57 (229)
355 KOG0733 Nuclear AAA ATPase (VC 95.1 0.067 1.5E-06 59.8 7.9 98 183-300 190-293 (802)
356 PF01583 APS_kinase: Adenylyls 95.1 0.037 7.9E-07 52.1 5.1 36 210-247 2-37 (156)
357 PF00006 ATP-synt_ab: ATP synt 95.1 0.067 1.5E-06 53.7 7.4 82 211-298 16-114 (215)
358 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.11 2.5E-06 51.2 9.1 22 212-233 1-22 (183)
359 PRK00889 adenylylsulfate kinas 95.0 0.059 1.3E-06 52.8 6.9 26 209-234 3-28 (175)
360 PF08298 AAA_PrkA: PrkA AAA do 95.0 0.024 5.1E-07 60.2 4.1 52 182-233 60-111 (358)
361 PRK14723 flhF flagellar biosyn 95.0 0.13 2.7E-06 61.1 10.4 88 210-299 185-273 (767)
362 PRK05986 cob(I)alamin adenolsy 95.0 0.15 3.2E-06 49.7 9.1 119 210-330 22-159 (191)
363 PF13238 AAA_18: AAA domain; P 95.0 0.016 3.6E-07 53.3 2.6 21 213-233 1-21 (129)
364 cd01121 Sms Sms (bacterial rad 94.9 0.15 3.3E-06 56.0 10.3 83 209-299 81-168 (372)
365 cd00267 ABC_ATPase ABC (ATP-bi 94.9 0.076 1.6E-06 50.9 7.1 117 211-335 26-146 (157)
366 TIGR03878 thermo_KaiC_2 KaiC d 94.9 0.1 2.3E-06 54.6 8.6 41 209-251 35-75 (259)
367 cd03263 ABC_subfamily_A The AB 94.9 0.16 3.6E-06 51.8 9.9 53 282-334 144-197 (220)
368 cd03229 ABC_Class3 This class 94.8 0.083 1.8E-06 51.9 7.4 121 210-333 26-165 (178)
369 cd03235 ABC_Metallic_Cations A 94.8 0.25 5.4E-06 50.2 11.1 23 211-233 26-48 (213)
370 cd02027 APSK Adenosine 5'-phos 94.8 0.075 1.6E-06 50.4 6.7 22 212-233 1-22 (149)
371 KOG0731 AAA+-type ATPase conta 94.8 0.21 4.6E-06 58.5 11.4 181 184-389 312-519 (774)
372 PF00154 RecA: recA bacterial 94.8 0.077 1.7E-06 56.4 7.3 85 209-300 52-142 (322)
373 PF12061 DUF3542: Protein of u 94.8 0.036 7.8E-07 56.4 4.5 76 9-84 297-373 (402)
374 cd03282 ABC_MSH4_euk MutS4 hom 94.8 0.087 1.9E-06 52.8 7.4 119 210-337 29-159 (204)
375 PRK11388 DNA-binding transcrip 94.8 0.17 3.7E-06 60.9 11.3 131 183-329 325-467 (638)
376 cd03269 ABC_putative_ATPase Th 94.7 0.22 4.7E-06 50.5 10.4 23 211-233 27-49 (210)
377 cd02019 NK Nucleoside/nucleoti 94.7 0.022 4.7E-07 45.7 2.3 22 212-233 1-22 (69)
378 TIGR00390 hslU ATP-dependent p 94.7 0.06 1.3E-06 58.8 6.4 81 183-265 12-104 (441)
379 COG1124 DppF ABC-type dipeptid 94.7 0.3 6.5E-06 48.8 10.5 128 210-337 33-210 (252)
380 TIGR00235 udk uridine kinase. 94.7 0.027 5.8E-07 57.0 3.5 26 208-233 4-29 (207)
381 COG1120 FepC ABC-type cobalami 94.7 0.31 6.7E-06 50.0 11.0 128 210-337 28-207 (258)
382 cd03237 ABC_RNaseL_inhibitor_d 94.7 0.24 5.2E-06 51.4 10.6 126 210-335 25-182 (246)
383 cd03215 ABC_Carb_Monos_II This 94.7 0.31 6.8E-06 48.0 11.0 53 282-334 115-169 (182)
384 PRK09519 recA DNA recombinatio 94.6 0.11 2.5E-06 61.7 8.9 84 209-299 59-148 (790)
385 PF07726 AAA_3: ATPase family 94.6 0.032 6.9E-07 50.0 3.3 27 213-241 2-28 (131)
386 PRK05480 uridine/cytidine kina 94.6 0.028 6.1E-07 56.9 3.4 25 209-233 5-29 (209)
387 COG1428 Deoxynucleoside kinase 94.6 0.021 4.5E-07 55.6 2.3 25 210-234 4-28 (216)
388 PF08433 KTI12: Chromatin asso 94.6 0.058 1.3E-06 56.4 5.8 24 211-234 2-25 (270)
389 cd02028 UMPK_like Uridine mono 94.6 0.063 1.4E-06 52.6 5.7 22 212-233 1-22 (179)
390 PRK06547 hypothetical protein; 94.5 0.046 9.9E-07 53.0 4.6 26 208-233 13-38 (172)
391 PRK13540 cytochrome c biogenes 94.5 0.2 4.3E-06 50.3 9.4 54 282-335 138-193 (200)
392 PF03205 MobB: Molybdopterin g 94.5 0.051 1.1E-06 50.7 4.7 39 211-250 1-39 (140)
393 TIGR02329 propionate_PrpR prop 94.5 0.18 3.8E-06 58.2 10.1 133 183-329 212-358 (526)
394 cd03369 ABCC_NFT1 Domain 2 of 94.5 0.34 7.5E-06 48.9 11.2 53 282-334 136-189 (207)
395 TIGR01425 SRP54_euk signal rec 94.5 0.18 3.8E-06 56.0 9.6 38 209-248 99-136 (429)
396 KOG1947 Leucine rich repeat pr 94.5 0.0054 1.2E-07 71.5 -2.3 37 650-686 186-224 (482)
397 PF00910 RNA_helicase: RNA hel 94.5 0.021 4.5E-07 50.6 2.0 22 213-234 1-22 (107)
398 cd03264 ABC_drug_resistance_li 94.5 0.27 5.8E-06 49.9 10.4 22 212-233 27-48 (211)
399 cd03217 ABC_FeS_Assembly ABC-t 94.5 0.2 4.4E-06 50.2 9.3 121 210-333 26-168 (200)
400 PRK09280 F0F1 ATP synthase sub 94.4 0.17 3.8E-06 56.4 9.4 89 210-299 144-248 (463)
401 TIGR03522 GldA_ABC_ATP gliding 94.4 0.31 6.8E-06 52.4 11.3 54 282-335 144-198 (301)
402 TIGR03740 galliderm_ABC gallid 94.4 0.36 7.7E-06 49.4 11.2 53 282-334 135-189 (223)
403 PRK06731 flhF flagellar biosyn 94.4 0.38 8.1E-06 50.3 11.2 102 210-313 75-180 (270)
404 cd03266 ABC_NatA_sodium_export 94.4 0.25 5.5E-06 50.3 10.0 23 211-233 32-54 (218)
405 PTZ00088 adenylate kinase 1; P 94.4 0.037 7.9E-07 56.4 3.6 21 213-233 9-29 (229)
406 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.4 0.29 6.3E-06 50.1 10.4 23 211-233 49-71 (224)
407 cd03244 ABCC_MRP_domain2 Domai 94.4 0.3 6.4E-06 50.0 10.4 53 282-334 150-203 (221)
408 cd03245 ABCC_bacteriocin_expor 94.3 0.29 6.3E-06 50.0 10.3 24 210-233 30-53 (220)
409 PF10236 DAP3: Mitochondrial r 94.3 1.4 3E-05 47.4 15.8 49 342-391 258-306 (309)
410 PRK09544 znuC high-affinity zi 94.3 0.26 5.7E-06 51.4 10.1 24 210-233 30-53 (251)
411 PRK04328 hypothetical protein; 94.3 0.17 3.6E-06 52.7 8.5 53 209-266 22-74 (249)
412 COG0396 sufC Cysteine desulfur 94.3 0.51 1.1E-05 46.7 11.0 63 276-338 149-213 (251)
413 PF03308 ArgK: ArgK protein; 94.3 0.079 1.7E-06 53.7 5.7 64 191-258 14-77 (266)
414 KOG0734 AAA+-type ATPase conta 94.3 0.13 2.8E-06 56.7 7.6 97 184-300 305-407 (752)
415 PF03969 AFG1_ATPase: AFG1-lik 94.3 0.048 1.1E-06 59.5 4.6 105 209-332 61-170 (362)
416 COG0563 Adk Adenylate kinase a 94.3 0.061 1.3E-06 52.4 4.8 22 212-233 2-23 (178)
417 KOG0473 Leucine-rich repeat pr 94.3 0.0018 3.9E-08 62.9 -5.6 86 596-688 38-123 (326)
418 cd01135 V_A-ATPase_B V/A-type 94.2 0.14 3E-06 53.0 7.5 90 210-299 69-176 (276)
419 smart00534 MUTSac ATPase domai 94.2 0.054 1.2E-06 53.5 4.5 119 212-336 1-129 (185)
420 cd03283 ABC_MutS-like MutS-lik 94.2 0.2 4.3E-06 50.1 8.5 23 211-233 26-48 (199)
421 TIGR00150 HI0065_YjeE ATPase, 94.2 0.054 1.2E-06 49.5 4.0 41 190-234 6-46 (133)
422 COG1703 ArgK Putative periplas 94.2 0.066 1.4E-06 54.9 4.9 64 193-260 38-101 (323)
423 PRK06762 hypothetical protein; 94.2 0.036 7.7E-07 53.8 3.0 23 211-233 3-25 (166)
424 PRK03839 putative kinase; Prov 94.2 0.033 7.1E-07 54.9 2.8 22 212-233 2-23 (180)
425 COG0464 SpoVK ATPases of the A 94.2 0.39 8.5E-06 55.8 12.2 134 209-362 275-424 (494)
426 PRK03846 adenylylsulfate kinas 94.2 0.15 3.2E-06 51.1 7.5 25 209-233 23-47 (198)
427 cd03240 ABC_Rad50 The catalyti 94.2 0.24 5.3E-06 49.7 9.1 53 282-334 132-188 (204)
428 PRK08006 replicative DNA helic 94.1 4.4 9.6E-05 46.3 20.0 55 209-266 223-277 (471)
429 COG0467 RAD55 RecA-superfamily 94.1 0.11 2.4E-06 54.7 6.8 51 209-263 22-72 (260)
430 PF00560 LRR_1: Leucine Rich R 94.1 0.027 5.8E-07 33.4 1.2 21 653-674 1-21 (22)
431 PRK05973 replicative DNA helic 94.1 0.26 5.7E-06 50.2 9.2 49 209-261 63-111 (237)
432 PRK10820 DNA-binding transcrip 94.1 0.11 2.3E-06 60.5 7.2 133 183-329 204-349 (520)
433 KOG0730 AAA+-type ATPase [Post 94.1 0.64 1.4E-05 53.1 12.8 51 183-233 434-491 (693)
434 TIGR03498 FliI_clade3 flagella 94.1 0.19 4.2E-06 55.8 8.8 87 210-299 140-240 (418)
435 cd03254 ABCC_Glucan_exporter_l 94.1 0.34 7.4E-06 49.8 10.3 54 281-334 149-203 (229)
436 cd03233 ABC_PDR_domain1 The pl 94.1 0.43 9.3E-06 47.9 10.7 24 210-233 33-56 (202)
437 KOG0733 Nuclear AAA ATPase (VC 94.1 0.3 6.4E-06 54.9 9.9 132 211-362 546-693 (802)
438 TIGR02858 spore_III_AA stage I 94.1 0.21 4.6E-06 52.2 8.6 129 191-334 97-234 (270)
439 TIGR01360 aden_kin_iso1 adenyl 94.1 0.04 8.7E-07 54.8 3.2 25 209-233 2-26 (188)
440 PRK06002 fliI flagellum-specif 94.0 0.19 4.1E-06 56.0 8.4 87 210-299 165-264 (450)
441 PRK00625 shikimate kinase; Pro 94.0 0.036 7.9E-07 53.7 2.6 22 212-233 2-23 (173)
442 PRK07276 DNA polymerase III su 94.0 1.2 2.5E-05 47.1 13.9 71 287-359 102-173 (290)
443 cd03298 ABC_ThiQ_thiamine_tran 94.0 0.17 3.8E-06 51.2 7.8 53 282-334 139-194 (211)
444 PRK13543 cytochrome c biogenes 94.0 0.4 8.6E-06 48.7 10.3 23 211-233 38-60 (214)
445 KOG0743 AAA+-type ATPase [Post 94.0 1.1 2.4E-05 49.1 13.8 24 211-234 236-259 (457)
446 PRK12597 F0F1 ATP synthase sub 94.0 0.16 3.6E-06 56.8 8.0 89 210-299 143-247 (461)
447 cd03231 ABC_CcmA_heme_exporter 93.9 0.34 7.4E-06 48.6 9.6 24 210-233 26-49 (201)
448 PRK10416 signal recognition pa 93.9 0.37 8E-06 51.8 10.3 26 209-234 113-138 (318)
449 PRK05201 hslU ATP-dependent pr 93.9 0.1 2.2E-06 57.1 6.0 81 183-265 15-107 (443)
450 PRK04040 adenylate kinase; Pro 93.9 0.044 9.5E-07 54.1 3.0 23 211-233 3-25 (188)
451 COG4618 ArpD ABC-type protease 93.9 0.61 1.3E-05 51.6 11.7 55 281-335 482-538 (580)
452 PRK15453 phosphoribulokinase; 93.8 0.31 6.7E-06 50.5 9.0 77 209-287 4-88 (290)
453 TIGR01188 drrA daunorubicin re 93.8 0.39 8.5E-06 51.7 10.5 23 211-233 20-42 (302)
454 PRK12678 transcription termina 93.8 0.052 1.1E-06 61.1 3.7 96 194-299 405-513 (672)
455 PRK08972 fliI flagellum-specif 93.8 0.16 3.5E-06 56.2 7.5 86 210-299 162-262 (444)
456 cd03251 ABCC_MsbA MsbA is an e 93.8 0.66 1.4E-05 47.9 11.9 54 281-334 148-202 (234)
457 PRK13650 cbiO cobalt transport 93.8 0.29 6.4E-06 52.0 9.4 53 281-333 150-205 (279)
458 cd03253 ABCC_ATM1_transporter 93.8 0.48 1E-05 49.0 10.8 54 281-334 147-201 (236)
459 PRK10733 hflB ATP-dependent me 93.8 0.33 7.2E-06 57.9 10.7 130 212-361 187-335 (644)
460 COG1066 Sms Predicted ATP-depe 93.8 0.18 4E-06 54.1 7.5 82 210-300 93-179 (456)
461 PF13481 AAA_25: AAA domain; P 93.7 0.27 5.9E-06 49.0 8.6 42 211-252 33-82 (193)
462 cd03232 ABC_PDR_domain2 The pl 93.7 0.21 4.6E-06 49.7 7.7 23 210-232 33-55 (192)
463 PRK15177 Vi polysaccharide exp 93.7 0.37 7.9E-06 48.9 9.5 24 210-233 13-36 (213)
464 PRK08927 fliI flagellum-specif 93.7 0.27 5.9E-06 54.7 9.0 86 210-299 158-258 (442)
465 TIGR03575 selen_PSTK_euk L-ser 93.7 0.19 4.1E-06 54.1 7.6 37 213-250 2-38 (340)
466 cd03213 ABCG_EPDR ABCG transpo 93.7 0.33 7E-06 48.4 8.9 116 210-330 35-172 (194)
467 cd03243 ABC_MutS_homologs The 93.7 0.079 1.7E-06 53.3 4.5 23 211-233 30-52 (202)
468 TIGR00968 3a0106s01 sulfate AB 93.6 0.4 8.6E-06 49.6 9.8 24 210-233 26-49 (237)
469 KOG0729 26S proteasome regulat 93.6 0.11 2.3E-06 51.8 5.0 96 183-299 177-280 (435)
470 COG2274 SunT ABC-type bacterio 93.6 0.48 1E-05 56.6 11.4 53 281-333 619-673 (709)
471 cd02029 PRK_like Phosphoribulo 93.6 0.18 3.9E-06 51.7 6.8 76 212-289 1-84 (277)
472 KOG2170 ATPase of the AAA+ sup 93.6 0.61 1.3E-05 48.0 10.4 114 184-314 83-203 (344)
473 PRK13647 cbiO cobalt transport 93.6 0.41 8.8E-06 50.7 9.9 54 281-334 148-203 (274)
474 cd03300 ABC_PotA_N PotA is an 93.6 0.37 8.1E-06 49.6 9.4 23 211-233 27-49 (232)
475 PRK13765 ATP-dependent proteas 93.5 0.093 2E-06 61.6 5.4 76 182-267 30-105 (637)
476 PRK13537 nodulation ABC transp 93.5 0.51 1.1E-05 50.8 10.7 23 211-233 34-56 (306)
477 PRK11823 DNA repair protein Ra 93.5 0.47 1E-05 53.8 10.8 41 209-251 79-119 (446)
478 COG1117 PstB ABC-type phosphat 93.5 0.095 2.1E-06 51.0 4.4 24 209-232 32-55 (253)
479 cd03252 ABCC_Hemolysin The ABC 93.5 0.65 1.4E-05 48.0 11.2 53 282-334 149-202 (237)
480 COG1419 FlhF Flagellar GTP-bin 93.5 0.32 6.9E-06 52.8 8.8 89 209-300 202-292 (407)
481 PF13479 AAA_24: AAA domain 93.5 0.19 4.2E-06 50.8 7.0 31 211-251 4-34 (213)
482 TIGR03771 anch_rpt_ABC anchore 93.5 0.51 1.1E-05 48.3 10.2 54 281-334 123-178 (223)
483 PF06745 KaiC: KaiC; InterPro 93.5 0.1 2.3E-06 53.5 5.1 49 209-260 18-66 (226)
484 TIGR02314 ABC_MetN D-methionin 93.5 0.36 7.8E-06 52.6 9.4 56 281-336 150-208 (343)
485 cd03287 ABC_MSH3_euk MutS3 hom 93.4 0.11 2.4E-06 52.7 5.1 118 210-335 31-160 (222)
486 PRK00279 adk adenylate kinase; 93.4 0.39 8.5E-06 48.8 9.2 22 212-233 2-23 (215)
487 COG4181 Predicted ABC-type tra 93.4 1.4 3E-05 41.5 11.5 86 252-337 121-215 (228)
488 cd03280 ABC_MutS2 MutS2 homolo 93.4 0.17 3.8E-06 50.7 6.5 22 210-231 28-49 (200)
489 cd03236 ABC_RNaseL_inhibitor_d 93.4 0.58 1.3E-05 48.8 10.5 24 210-233 26-49 (255)
490 cd01134 V_A-ATPase_A V/A-type 93.4 0.47 1E-05 50.7 9.7 60 194-262 146-206 (369)
491 PRK08840 replicative DNA helic 93.4 7.8 0.00017 44.2 20.2 56 209-267 216-271 (464)
492 TIGR01039 atpD ATP synthase, F 93.4 0.45 9.7E-06 53.1 9.9 89 210-299 143-247 (461)
493 PRK10771 thiQ thiamine transpo 93.3 0.26 5.7E-06 50.8 7.9 24 210-233 25-48 (232)
494 PRK05922 type III secretion sy 93.3 0.44 9.6E-06 53.0 9.8 85 211-299 158-257 (434)
495 COG0714 MoxR-like ATPases [Gen 93.3 0.16 3.5E-06 55.4 6.5 109 184-315 25-138 (329)
496 cd02023 UMPK Uridine monophosp 93.3 0.05 1.1E-06 54.6 2.3 22 212-233 1-22 (198)
497 TIGR02322 phosphon_PhnN phosph 93.3 0.06 1.3E-06 53.0 2.9 23 211-233 2-24 (179)
498 PRK13409 putative ATPase RIL; 93.3 0.53 1.1E-05 55.6 11.1 124 210-336 365-521 (590)
499 PF13245 AAA_19: Part of AAA d 93.3 0.18 3.8E-06 41.3 5.0 22 211-232 11-32 (76)
500 cd02024 NRK1 Nicotinamide ribo 93.3 0.052 1.1E-06 53.2 2.3 22 212-233 1-22 (187)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-89 Score=808.45 Aligned_cols=771 Identities=25% Similarity=0.373 Sum_probs=577.2
Q ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhHhhhHhHHHHHHHHHHHHHh
Q 002132 13 LISFVAKEIKQQVKLVIGVEKEVKGITSHLRAIRAVLDDAEEKQVKDEAVRLWLGRLKYASYDIEDVLDEWITARHKLQI 92 (961)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~~d~ed~lD~~~~~~~~~~~ 92 (961)
.+.++.+.+.+++....+.++.+..|++.|..++++++||+.++.....+..|.+.+++++|++||.++.|..+..+.+.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~ 87 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKA 87 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888999999999999999999999999999999998888899999999999999999999999988876543
Q ss_pred hcCCCCcccccccccc-cccccCCCCccCCcccccccccccchhhHHHHHHHHHHHHHHHHhccccccccccCC-CC--C
Q 002132 93 EGGADDNALVAPHKKK-KVCFCFPASCFGFRKEEFGLKQVFPRHDIAVKVKEINEALHDIAAQKDMFDLVKSGN-KS--S 168 (961)
Q Consensus 93 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~-~~--~ 168 (961)
.... ..+ ...+.. |+ ..+++..+..+..+.+++..+.+....+.....-. .. .
T Consensus 88 ~~~l---------~~~~~~~~~~---c~-----------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~ 144 (889)
T KOG4658|consen 88 NDLL---------STRSVERQRL---CL-----------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESL 144 (889)
T ss_pred hHHh---------hhhHHHHHHH---hh-----------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccc
Confidence 3220 000 011111 10 12344555555555556555555555544332111 11 1
Q ss_pred CCCCcccccccCCCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchh-hHhcCCeEEEEE
Q 002132 169 ERPRRVQSTSLIDEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE-VKRKFDKLLWVC 247 (961)
Q Consensus 169 ~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~ 247 (961)
......+..+...... ||.+..++++.+.|...+ ..+++|+||||+||||||+.++|+.. ++.+||.++||+
T Consensus 145 ~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~ 217 (889)
T KOG4658|consen 145 DPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV 217 (889)
T ss_pred cchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE
Confidence 1112234444444445 999999999999998654 38999999999999999999999987 999999999999
Q ss_pred eCCcccHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEE
Q 002132 248 VSDPFEQFRVAKAIAEALGIPSSNLGE--FQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVT 325 (961)
Q Consensus 248 ~s~~~~~~~~~~~i~~~l~~~~~~~~~--~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 325 (961)
||+.++..+++.+|++.++.......+ .++++..|.+.|++|||+|||||||+. .+|+.+..++|....||||++|
T Consensus 218 VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlT 295 (889)
T KOG4658|consen 218 VSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLT 295 (889)
T ss_pred EcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEE
Confidence 999999999999999999875544333 468899999999999999999999997 5799999999999999999999
Q ss_pred ccchhhhhh-hccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCCCH
Q 002132 326 TRKKSVASM-MGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQIE 404 (961)
Q Consensus 326 tR~~~~~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~ 404 (961)
||+..|+.. ++.. ..++++.|+++|||+||.+.+|.... ...+.++++|++++++|+|+|||++++|+.|+.+.+.
T Consensus 296 TRs~~V~~~~m~~~--~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~ 372 (889)
T KOG4658|consen 296 TRSEEVCGRAMGVD--YPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTV 372 (889)
T ss_pred eccHhhhhccccCC--ccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcH
Confidence 999999998 6554 78999999999999999999986533 3345589999999999999999999999999999999
Q ss_pred HHHHHHhcCcccc----hhhhhhhHHHHHHHhhcCCChhhHHHHhhhccCCCCCccChHHHHHHHHHcCCcccC-CCCcH
Q 002132 405 EEWERISNSDLWR----VEEMEKGVLSSLLLSYNDLPSKVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAK-QNKEM 479 (961)
Q Consensus 405 ~~w~~~~~~~~~~----~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~~-~~~~~ 479 (961)
++|+++.+...+. .+++.+.+++++++||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+. .+..+
T Consensus 373 ~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~ 452 (889)
T KOG4658|consen 373 QEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA 452 (889)
T ss_pred HHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch
Confidence 9999998865443 345567899999999999999999999999999999999999999999999999985 57889
Q ss_pred HHHHHHHHHHHHhCCCcccccccCCCceeeEeechhHHHHHHhhcc-----ccceEEecCCCCCCCcccccccceeEEEE
Q 002132 480 ETIGEEYFSILASRSFFQEFEKSYDNRIIECKMHDIVHDFARFVSQ-----NECFSMEINGSEEPNTINSLDEKVRHLML 554 (961)
Q Consensus 480 ~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mHdlv~~~a~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~r~lsl 554 (961)
+++|+.|+.+|++++|++..... ++..+|+|||+|||+|.++++ +++.+...............+..+|++++
T Consensus 453 ~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~ 530 (889)
T KOG4658|consen 453 EDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSL 530 (889)
T ss_pred hcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEE
Confidence 99999999999999999976543 667899999999999999999 66655554311111222335678999999
Q ss_pred EeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceE
Q 002132 555 IIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYL 634 (961)
Q Consensus 555 ~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L 634 (961)
.++..... ..-..+++|++|.+.++.. ....+...+|..++.||||||++|.. ..++|.+|++|.|||||
T Consensus 531 ~~~~~~~~-~~~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~-----l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 531 MNNKIEHI-AGSSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSS-----LSKLPSSIGELVHLRYL 600 (889)
T ss_pred eccchhhc-cCCCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCc-----cCcCChHHhhhhhhhcc
Confidence 99877643 2334567899999998752 12355677899999999999999874 78899999999999999
Q ss_pred EecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCC
Q 002132 635 NLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGG 714 (961)
Q Consensus 635 ~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~ 714 (961)
+|+++.|..||..+.+|..|++|++..+..+..+|..+..|++||+|.+.... ...-...++.+.+|++|..+.....+
T Consensus 601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch
Confidence 99999999999999999999999999998777777777779999999987653 11111224455555555544332221
Q ss_pred CcCCCcccccccccCCCcCCc-cccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCC
Q 002132 715 GVDGRKACWFESLKNLKHLQV-CGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPP 793 (961)
Q Consensus 715 ~~~~~~~~~l~~L~~L~~L~~-~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 793 (961)
. .....+..+..|..+.. ..... .......+.+..+.+|+.|.+..+...+........ ..... .+
T Consensus 680 ~---~~~e~l~~~~~L~~~~~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~--~~~~~---~f 746 (889)
T KOG4658|consen 680 V---LLLEDLLGMTRLRSLLQSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES--LIVLL---CF 746 (889)
T ss_pred h---HhHhhhhhhHHHHHHhHhhhhcc-----cccceeecccccccCcceEEEEcCCCchhhcccccc--cchhh---hH
Confidence 0 00011111222211111 00000 011222335667788888888876654211000000 00000 23
Q ss_pred CCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCc-CCCCCCccccce
Q 002132 794 PDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQ-LPPLGKLQSLEK 845 (961)
Q Consensus 794 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~ 845 (961)
+++.++.+.++.... .+.|....++|+.|.+..|...+. +|....+..++.
T Consensus 747 ~~l~~~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred HHHHHHHhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 455566666666555 677777788888888888876554 444555555554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.7e-65 Score=637.28 Aligned_cols=730 Identities=20% Similarity=0.227 Sum_probs=485.9
Q ss_pred HHHHHHHHHHHHHHHhccccccccccCC-------CCCCCCCcccccccCCCCceecccchHHHHHHHHhcCCcccCCCe
Q 002132 138 AVKVKEINEALHDIAAQKDMFDLVKSGN-------KSSERPRRVQSTSLIDEEEICGRVGERNELLSKLLCESSEQQKGL 210 (961)
Q Consensus 138 ~~~i~~~~~~l~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~ 210 (961)
..++++|++++.+++...+ +....... ............+..+...+|||+..++++..+|.... +++
T Consensus 133 ~~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----~~~ 207 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----EEV 207 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----Cce
Confidence 3578999999999977543 22211000 00111111222334456789999999999999886433 368
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEe---CCc-----------cc-HHHHHHHHHHHcCCCC-CCCCC
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCV---SDP-----------FE-QFRVAKAIAEALGIPS-SNLGE 274 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~-----------~~-~~~~~~~i~~~l~~~~-~~~~~ 274 (961)
++|+||||||+||||||+++|+ ++..+|+..+|+.. +.. +. ...+..+++.++.... .....
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 9999999999999999999999 57789998888742 111 01 1233444444442221 11111
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhhhhccCCcceEEcCCCCHHHHH
Q 002132 275 FQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMMGSTDTDIITVMELTEEECW 354 (961)
Q Consensus 275 ~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~~~~~~~~~~l~~L~~~~~~ 354 (961)
. ..+++.++++|+||||||||+. ..|+.+.......++||+||||||+..++...+.. ++|+++.+++++||
T Consensus 286 ~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~--~~~~v~~l~~~ea~ 357 (1153)
T PLN03210 286 L----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID--HIYEVCLPSNELAL 357 (1153)
T ss_pred H----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC--eEEEecCCCHHHHH
Confidence 1 3567788999999999999875 46888876666667899999999999998876655 78999999999999
Q ss_pred HHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCCCHHHHHHHhcCcccchhhhhhhHHHHHHHhhc
Q 002132 355 SLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQIEEEWERISNSDLWRVEEMEKGVLSSLLLSYN 434 (961)
Q Consensus 355 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~ 434 (961)
+||++.||+... ++..+.+++++|+++|+|+|||++++|++|+.+ +.++|+.++...... .+..+.++|++||+
T Consensus 358 ~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd 431 (1153)
T PLN03210 358 EMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYD 431 (1153)
T ss_pred HHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhh
Confidence 999999997543 345688999999999999999999999999987 589999988764432 23469999999999
Q ss_pred CCCh-hhHHHHhhhccCCCCCccChHHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHHhCCCcccccccCCCceeeEeec
Q 002132 435 DLPS-KVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAKQNKEMETIGEEYFSILASRSFFQEFEKSYDNRIIECKMH 513 (961)
Q Consensus 435 ~L~~-~~k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mH 513 (961)
.|++ ..|.||+++|+|+.+..+ +.+..|++.+.... +..++.|+++|||+... ..++||
T Consensus 432 ~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~----------~~~l~~L~~ksLi~~~~-------~~~~MH 491 (1153)
T PLN03210 432 GLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV----------NIGLKNLVDKSLIHVRE-------DIVEMH 491 (1153)
T ss_pred ccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc----------hhChHHHHhcCCEEEcC-------CeEEhh
Confidence 9987 599999999999988654 45778888765432 22388999999998632 248999
Q ss_pred hhHHHHHHhhccccc-------eEEecCCCCCCCcccccccceeEEEEEeccccc---cccccccCCCccEEEecCCCCC
Q 002132 514 DIVHDFARFVSQNEC-------FSMEINGSEEPNTINSLDEKVRHLMLIIGREAS---FRVPICRVKRIRSLLIDNSRTS 583 (961)
Q Consensus 514 dlv~~~a~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~ 583 (961)
|++|+||+.+++++. +.............+.....++.+++..+.... ....+..+++|+.|.+..+...
T Consensus 492 dLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~ 571 (1153)
T PLN03210 492 SLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWD 571 (1153)
T ss_pred hHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccc
Confidence 999999999987653 211111000000012234567777776554332 2345778889998888654311
Q ss_pred C-CccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCc
Q 002132 584 C-SYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRC 662 (961)
Q Consensus 584 ~-~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~ 662 (961)
. .......+..+..-...||.|++.++. +..+|..+ .+.+|++|+++++.+..+|..+..+++|++|+|++|
T Consensus 572 ~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~------l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~ 644 (1153)
T PLN03210 572 QKKEVRWHLPEGFDYLPPKLRLLRWDKYP------LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGS 644 (1153)
T ss_pred ccccceeecCcchhhcCcccEEEEecCCC------CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCC
Confidence 0 001112222222222457777777666 66666655 356666666666666666666666666666666666
Q ss_pred ccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCC
Q 002132 663 LYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLG 742 (961)
Q Consensus 663 ~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~ 742 (961)
..+..+|. ++.+++|++|++++|..+..+|..++++++|+.|+. ..+......+..+ .+++|+.|.+.+|..+.
T Consensus 645 ~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L----~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~ 718 (1153)
T PLN03210 645 KNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM----SRCENLEILPTGI-NLKSLYRLNLSGCSRLK 718 (1153)
T ss_pred CCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC----CCCCCcCccCCcC-CCCCCCEEeCCCCCCcc
Confidence 55556653 566666666666666656666666666666666652 2211111122222 34555555555544333
Q ss_pred CCCChhh-hh-----------ccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCC
Q 002132 743 DVSDVGE-AK-----------RLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVF 810 (961)
Q Consensus 743 ~~~~~~~-~~-----------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l 810 (961)
..+.... .. ......+.+|+.|.+..+...... .............+++|+.|+|++|.....+
T Consensus 719 ~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~----~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 719 SFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW----ERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred ccccccCCcCeeecCCCccccccccccccccccccccccchhhcc----ccccccchhhhhccccchheeCCCCCCcccc
Confidence 2221000 00 000002334444444321110000 0000000011223578999999998776668
Q ss_pred CCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccc
Q 002132 811 PNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYG 890 (961)
Q Consensus 811 p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~ 890 (961)
|.++.++++|+.|+|++|...+.+|...++++|+.|+|++|..+..++. ..++|+.|+|+++ .++.++..
T Consensus 795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---------~~~nL~~L~Ls~n-~i~~iP~s 864 (1153)
T PLN03210 795 PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---------ISTNISDLNLSRT-GIEEVPWW 864 (1153)
T ss_pred ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---------cccccCEeECCCC-CCccChHH
Confidence 9999999999999999998888888766899999999999987765542 3468999999886 56666654
Q ss_pred cccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEccccccccc
Q 002132 891 ITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKH 943 (961)
Q Consensus 891 ~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~ 943 (961)
.. .+++|+.|++.+|++++.+|..+..+++|+.+++++|+.+...
T Consensus 865 i~--------~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 865 IE--------KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred Hh--------cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 33 8999999999999999999988889999999999999988754
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.7e-43 Score=377.38 Aligned_cols=279 Identities=39% Similarity=0.616 Sum_probs=225.5
Q ss_pred ccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCC
Q 002132 188 RVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGI 267 (961)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (961)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998643 378999999999999999999999987789999999999999999999999999999988
Q ss_pred CCC---CCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhhhhccCCcceEE
Q 002132 268 PSS---NLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMMGSTDTDIIT 344 (961)
Q Consensus 268 ~~~---~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~~~~~~~~~~ 344 (961)
... ...+.+.....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..+... ...++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~ 153 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIE 153 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEE
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccc-ccccc
Confidence 743 3466788999999999999999999999986 47888888888777899999999999988877652 37899
Q ss_pred cCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCCCHHHHHHHhcCcccchh---hh
Q 002132 345 VMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQIEEEWERISNSDLWRVE---EM 421 (961)
Q Consensus 345 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~---~~ 421 (961)
+++|+.+||++||.+.++... ....+.+++.+++|+++|+|+||||+++|++|+.+.+..+|+.+.+....... +.
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999987654 12334556789999999999999999999999776567889888765444332 23
Q ss_pred hhhHHHHHHHhhcCCChhhHHHHhhhccCCCCCccChHHHHHHHHHcCCcccC
Q 002132 422 EKGVLSSLLLSYNDLPSKVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAK 474 (961)
Q Consensus 422 ~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~~ 474 (961)
...+..++.+||+.||+++|.||+|||+||+++.|+++.|+++|+++|||...
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 46799999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=7e-27 Score=294.73 Aligned_cols=375 Identities=20% Similarity=0.238 Sum_probs=196.6
Q ss_pred ceeEEEEEeccccc-cccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCc----------
Q 002132 548 KVRHLMLIIGREAS-FRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPF---------- 616 (961)
Q Consensus 548 ~~r~lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~---------- 616 (961)
.++.|.+..+.... .+..+..+++|++|.++++.. .+.++..++..+++||+|+|++|......
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~-----~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-----SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc-----CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCE
Confidence 45555555544322 233455566666666665542 22344444555666666666655410000
Q ss_pred ------cc-cccCccccccCccceEEecCCccc-ccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccc
Q 002132 617 ------WT-LKIPRNIEKLVHLRYLNLSCQNIR-KLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDS 688 (961)
Q Consensus 617 ------~~-~~lp~~i~~L~~Lr~L~L~~~~i~-~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 688 (961)
.+ ..+|..++++.+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 02 134445555555555555555543 4455555555555555555554445555555555555555555544
Q ss_pred cccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEe
Q 002132 689 LRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSF 768 (961)
Q Consensus 689 ~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 768 (961)
...+|..++++++|++|+ ...+.+.+..+..+..+++|+.|++..+...+..+. .+.++.+|+.|++++
T Consensus 225 ~~~~p~~l~~l~~L~~L~----L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLD----LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-------SIFSLQKLISLDLSD 293 (968)
T ss_pred CCcCChhHhcCCCCCEEE----CcCceeccccChhHhCCCCCCEEECcCCeeeccCch-------hHhhccCcCEEECcC
Confidence 444555555555555555 333333333444555555555555544443332221 234455666666655
Q ss_pred ecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceee
Q 002132 769 DEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLS 847 (961)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~ 847 (961)
|... ..++..+..+++|+.|++++|.+...+|.++..+++|+.|+|++|.+.+.+|. ++.+++|+.|+
T Consensus 294 n~l~-----------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 294 NSLS-----------GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred Ceec-----------cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 4432 12234455566777777777776665666777777777777777776655554 66777777777
Q ss_pred cccccCceEeCCcccCC------------------cccCcCcccceeeccccccccccccccccccccccccccccceec
Q 002132 848 LTIMRSVKRVGDECLGI------------------EIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLT 909 (961)
Q Consensus 848 L~~~~~l~~~~~~~~~~------------------~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~ 909 (961)
+++|.....++..+... ..+..+++|+.|++++|.--... +..+..+++|+.|+
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--------p~~~~~l~~L~~L~ 434 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--------PSEFTKLPLVYFLD 434 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--------ChhHhcCCCCCEEE
Confidence 77665322333221100 00123445555555544211111 12233566777777
Q ss_pred ccccccCcCCCCCCCCCCCccEEEEcccccccccccCCCCcccceEEec
Q 002132 910 IARCPKLKALPDHIHQTTTLKELRIWACELLGKHYRGGTEKTGLKYHTF 958 (961)
Q Consensus 910 l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~ 958 (961)
+++|.....+|..+..+++|+.|++++|......+... ..++|+.+.+
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~l 482 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDL 482 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEEC
Confidence 77766444555555667777777777777665555432 2344555443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=5e-26 Score=287.01 Aligned_cols=376 Identities=18% Similarity=0.156 Sum_probs=218.0
Q ss_pred cceeEEEEEeccccc-cccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccc
Q 002132 547 EKVRHLMLIIGREAS-FRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNI 625 (961)
Q Consensus 547 ~~~r~lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 625 (961)
.+++.|.+..+.... .+..+.++++|++|.+.++... +. .+..+.++++|++|+|++|.. ...+|..+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-----~~-~p~~l~~l~~L~~L~L~~n~l-----~~~~p~~l 232 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-----GQ-IPRELGQMKSLKWIYLGYNNL-----SGEIPYEI 232 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc-----Cc-CChHHcCcCCccEEECcCCcc-----CCcCChhH
Confidence 456666666554432 3445566667777777665432 12 223356677777777776651 22466667
Q ss_pred cccCccceEEecCCccc-ccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCc
Q 002132 626 EKLVHLRYLNLSCQNIR-KLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRT 704 (961)
Q Consensus 626 ~~L~~Lr~L~L~~~~i~-~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 704 (961)
+++++|++|++++|.+. .+|..++++++|++|++++|.....+|..+.++++|++|++++|.....+|..+.++++|+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 77777777777777665 56667777777777777777655566767777777777777776655556666667777777
Q ss_pred CCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCc--------
Q 002132 705 LDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGE-------- 776 (961)
Q Consensus 705 L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-------- 776 (961)
|+ ...+.+.+..+..+..+++|+.|++.++...+..+. .+..+.+|+.|++++|......+
T Consensus 313 L~----l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-------~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 313 LH----LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-------NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred EE----CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-------HHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence 66 444545444555566666777666666555433332 34455667777776554321000
Q ss_pred -----cCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeeccc
Q 002132 777 -----RRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTI 850 (961)
Q Consensus 777 -----~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~ 850 (961)
...+.....++..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|. +..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 000000111122233344444444444444433444444444444444444444433332 33444555555554
Q ss_pred ccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCcc
Q 002132 851 MRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLK 930 (961)
Q Consensus 851 ~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~ 930 (961)
|.....++.. ...++|+.|+++++.-.... +..+..+++|+.|++++|.....+|..+.++++|+
T Consensus 462 n~~~~~~p~~-------~~~~~L~~L~ls~n~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 526 (968)
T PLN00113 462 NKFFGGLPDS-------FGSKRLENLDLSRNQFSGAV--------PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526 (968)
T ss_pred ceeeeecCcc-------cccccceEEECcCCccCCcc--------ChhhhhhhccCEEECcCCcceeeCChHHcCccCCC
Confidence 4422222211 12345666666655321122 22344788999999999986678898888999999
Q ss_pred EEEEcccccccccccCCCCcccceEEecc
Q 002132 931 ELRIWACELLGKHYRGGTEKTGLKYHTFP 959 (961)
Q Consensus 931 ~L~l~~~~~l~~~~~~~~~~~~l~~~~~p 959 (961)
.|+|++|......+..+..+++|+.+.+.
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECC
Confidence 99999999988888877788888877654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=3.4e-26 Score=242.88 Aligned_cols=333 Identities=22% Similarity=0.251 Sum_probs=199.5
Q ss_pred cceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcccc
Q 002132 547 EKVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIE 626 (961)
Q Consensus 547 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 626 (961)
.++.||++..+........+..++.||++++..|....+ .+|+++| .++.|.+|||++|. +.+.|..+.
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns----GiP~diF-~l~dLt~lDLShNq------L~EvP~~LE 123 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS----GIPTDIF-RLKDLTILDLSHNQ------LREVPTNLE 123 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC----CCCchhc-ccccceeeecchhh------hhhcchhhh
Confidence 467788888777776677778888888888887775432 4566644 57888888888888 888888888
Q ss_pred ccCccceEEecCCcccccchhh-hccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcC
Q 002132 627 KLVHLRYLNLSCQNIRKLPETL-CELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTL 705 (961)
Q Consensus 627 ~L~~Lr~L~L~~~~i~~Lp~~i-~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 705 (961)
.-+++-.|+||+|+|..+|.++ -+|..|-.||||+|. +..+|+.+..|.+|+.|.+++|.....--..+..|++|++|
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 8888888888888888888774 578888888888887 88888888888888888888886433222234456666666
Q ss_pred CceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHH
Q 002132 706 DEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQL 785 (961)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 785 (961)
+. .+.+.-....|.++..|.+|..++++.+... .
T Consensus 203 hm---s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-------------------------------------------~ 236 (1255)
T KOG0444|consen 203 HM---SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-------------------------------------------I 236 (1255)
T ss_pred hc---ccccchhhcCCCchhhhhhhhhccccccCCC-------------------------------------------c
Confidence 62 2222222233555666666666665554321 1
Q ss_pred HHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCC
Q 002132 786 LLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGI 864 (961)
Q Consensus 786 ~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 864 (961)
+++.+..+++|+.|+|++|.++. +........+|++|+|+.|++. .+|. +.+|++|+.|.+.+|. +..- |.
T Consensus 237 vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk-L~Fe-----Gi 308 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK-LTFE-----GI 308 (1255)
T ss_pred chHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc-cccc-----CC
Confidence 23334444444444444444444 3333333444444555444332 2222 4444455554444433 1110 00
Q ss_pred -cccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEccccccccc
Q 002132 865 -EIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKH 943 (961)
Q Consensus 865 -~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~ 943 (961)
..++.+-+|+.+...++ .|+-.|.... .++.|++|.+..| .|-.+|..|.-++.|+.|++.+||++.-.
T Consensus 309 PSGIGKL~~Levf~aanN-~LElVPEglc--------RC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANN-KLELVPEGLC--------RCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ccchhhhhhhHHHHhhcc-ccccCchhhh--------hhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCC
Confidence 01133444555555443 3444443322 5667777776544 36667777766777777777777777665
Q ss_pred ccCCCCcccceE
Q 002132 944 YRGGTEKTGLKY 955 (961)
Q Consensus 944 ~~~~~~~~~l~~ 955 (961)
|......+.+.+
T Consensus 379 PKP~da~~~lef 390 (1255)
T KOG0444|consen 379 PKPNDARKKLEF 390 (1255)
T ss_pred CCcchhhhccee
Confidence 544433344433
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=6.3e-24 Score=224.76 Aligned_cols=350 Identities=19% Similarity=0.200 Sum_probs=196.8
Q ss_pred CccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccccc-chhhh
Q 002132 571 RIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKL-PETLC 649 (961)
Q Consensus 571 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~L-p~~i~ 649 (961)
..++|++++|..+ .+-..+|.++++|+.+++..|. +..+|...+...||+.|+|.+|.|.++ .+++.
T Consensus 79 ~t~~LdlsnNkl~------~id~~~f~nl~nLq~v~l~~N~------Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~ 146 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS------HIDFEFFYNLPNLQEVNLNKNE------LTRIPRFGHESGHLEKLDLRHNLISSVTSEELS 146 (873)
T ss_pred ceeeeeccccccc------cCcHHHHhcCCcceeeeeccch------hhhcccccccccceeEEeeeccccccccHHHHH
Confidence 4456666666543 2233346667777777777666 666666666666677777766666655 23456
Q ss_pred ccCCCcEEeecCcccccccch-hhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCccccccccc
Q 002132 650 ELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLK 728 (961)
Q Consensus 650 ~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~ 728 (961)
-++.|++|||+.|. +.++|. .+..=.++++|++++|.....--..+..+.+|-+|. .+.|.++......|+.|+
T Consensus 147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk----LsrNrittLp~r~Fk~L~ 221 (873)
T KOG4194|consen 147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK----LSRNRITTLPQRSFKRLP 221 (873)
T ss_pred hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeee----cccCcccccCHHHhhhcc
Confidence 66666666666665 555543 233335566666666643332223355555555555 444545444444555556
Q ss_pred CCCcCCccccccCCC--C-----CC----------hhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCC
Q 002132 729 NLKHLQVCGIRRLGD--V-----SD----------VGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQ 791 (961)
Q Consensus 729 ~L~~L~~~~~~~~~~--~-----~~----------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 791 (961)
+|+.|++..|..-.. . ++ +.......+..+.++++|+|..|.... ---.++-
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-----------vn~g~lf 290 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-----------VNEGWLF 290 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-----------hhccccc
Confidence 665555533322100 0 00 000001123334455555555443321 1112344
Q ss_pred CCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCCcccCcC
Q 002132 792 PPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAF 870 (961)
Q Consensus 792 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f 870 (961)
.+..|+.|++++|.+...-++.....++|+.|+|++|.+..--+. +..|..|+.|.|++|. +..+.+..+ .++
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af-----~~l 364 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAF-----VGL 364 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHH-----HHh
Confidence 455666666666666553344445566666666666655433222 5566666666666665 444443322 456
Q ss_pred cccceeeccccccccccccccccccccccccccccceecccccccCcCCCC-CCCCCCCccEEEEcccccccccccCCCC
Q 002132 871 PKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPD-HIHQTTTLKELRIWACELLGKHYRGGTE 949 (961)
Q Consensus 871 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 949 (961)
.+|++|+|+.+. + .|..+. ....+..||+|++|.+.+| +++.+|. .+..+++|++|++.+|+.....+..++.
T Consensus 365 ssL~~LdLr~N~-l-s~~IED---aa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 365 SSLHKLDLRSNE-L-SWCIED---AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred hhhhhhcCcCCe-E-EEEEec---chhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 788888887763 1 233322 2233456888888888887 4888874 4567888888888888887777777776
Q ss_pred cccceEEeccCC
Q 002132 950 KTGLKYHTFPTS 961 (961)
Q Consensus 950 ~~~l~~~~~p~s 961 (961)
+ .|+.+++.+|
T Consensus 439 m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 439 M-ELKELVMNSS 449 (873)
T ss_pred c-hhhhhhhccc
Confidence 6 6777776554
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=5.2e-23 Score=217.86 Aligned_cols=345 Identities=19% Similarity=0.217 Sum_probs=253.5
Q ss_pred ceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCc-ccc
Q 002132 548 KVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPR-NIE 626 (961)
Q Consensus 548 ~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~ 626 (961)
++..+.+..+.....+.-.....+|..|.+..|.+. .+-.+.+.-++.||+|||+.|. +..+|. ++.
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~------sv~se~L~~l~alrslDLSrN~------is~i~~~sfp 170 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS------SVTSEELSALPALRSLDLSRNL------ISEIPKPSFP 170 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeeccccc------cccHHHHHhHhhhhhhhhhhch------hhcccCCCCC
Confidence 455555555555544444445556777777776543 3344557778999999999998 777773 455
Q ss_pred ccCccceEEecCCcccccc-hhhhccCCCcEEeecCcccccccch-hhhcccCCceeecCCccccccc-cccCCCCCCCC
Q 002132 627 KLVHLRYLNLSCQNIRKLP-ETLCELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTDSLRYM-PVGIGRLTGLR 703 (961)
Q Consensus 627 ~L~~Lr~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~ 703 (961)
.-.++++|+|++|.|+.+- ..|.+|.+|-+|.|+.|. +..+|. .|.+|++|+.|++..|. +..+ -..+..|.+|+
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQ 248 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhh
Confidence 6689999999999999774 458889999999999998 778876 45569999999999885 3333 23477888898
Q ss_pred cCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchH
Q 002132 704 TLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDD 783 (961)
Q Consensus 704 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 783 (961)
.|. ...|.+.......|-.+.++++|++..|..... ....+-++..|+.|++++|.+..
T Consensus 249 nlk----lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v-------n~g~lfgLt~L~~L~lS~NaI~r---------- 307 (873)
T KOG4194|consen 249 NLK----LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV-------NEGWLFGLTSLEQLDLSYNAIQR---------- 307 (873)
T ss_pred hhh----hhhcCcccccCcceeeecccceeecccchhhhh-------hcccccccchhhhhccchhhhhe----------
Confidence 888 555555554455677889999999876654322 23367788999999999987642
Q ss_pred HHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCccc
Q 002132 784 QLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECL 862 (961)
Q Consensus 784 ~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~ 862 (961)
....+++..++|+.|+|++|.++..-+..+..+..|+.|.|+.|.+...-.. +..+.+|+.|+|++|..--.+.+..
T Consensus 308 -ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa- 385 (873)
T KOG4194|consen 308 -IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA- 385 (873)
T ss_pred -eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch-
Confidence 2355677889999999999999994456677899999999999976433222 7789999999999988433333321
Q ss_pred CCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEcccccc
Q 002132 863 GIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELL 940 (961)
Q Consensus 863 ~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l 940 (961)
....++|+|+.|.|.++ +++.++-.. +..+++|++|++.+|+.-.--|..+..+ .|++|.+..-..+
T Consensus 386 --~~f~gl~~LrkL~l~gN-qlk~I~krA-------fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 386 --VAFNGLPSLRKLRLTGN-QLKSIPKRA-------FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred --hhhccchhhhheeecCc-eeeecchhh-------hccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence 12257999999999998 788777532 3469999999999998444446677766 8999887655443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.8e-23 Score=220.93 Aligned_cols=336 Identities=21% Similarity=0.259 Sum_probs=245.3
Q ss_pred ccceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccc
Q 002132 546 DEKVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNI 625 (961)
Q Consensus 546 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 625 (961)
...++.|.+........+..+..+.+|..|.+..|... ++..+ ++.++.||.+++..|.. . ...+|..|
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~------~vhGE-Ls~Lp~LRsv~~R~N~L-K---nsGiP~di 99 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI------SVHGE-LSDLPRLRSVIVRDNNL-K---NSGIPTDI 99 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH------hhhhh-hccchhhHHHhhhcccc-c---cCCCCchh
Confidence 34567777766666666777777888888877776532 22222 56778888888888761 1 23578888
Q ss_pred cccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhh-hcccCCceeecCCccccccccccCCCCCCCCc
Q 002132 626 EKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGI-GKLINMKHLLNYRTDSLRYMPVGIGRLTGLRT 704 (961)
Q Consensus 626 ~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 704 (961)
..|..|..|+||.|.+++.|..+.+-.++-+|+||+|+ +..+|..+ .+|..|-.|++++|. +..+|+.+..|.+||+
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQT 177 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhh
Confidence 88888888888888888888888888888888888887 77888754 578888888888884 6778888888888888
Q ss_pred CCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHH
Q 002132 705 LDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQ 784 (961)
Q Consensus 705 L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 784 (961)
|. .++|.+.. ..+.+|++++.| +.|.++.... ...
T Consensus 178 L~----Ls~NPL~h---fQLrQLPsmtsL----------------------------~vLhms~TqR----------Tl~ 212 (1255)
T KOG0444|consen 178 LK----LSNNPLNH---FQLRQLPSMTSL----------------------------SVLHMSNTQR----------TLD 212 (1255)
T ss_pred hh----cCCChhhH---HHHhcCccchhh----------------------------hhhhcccccc----------hhh
Confidence 88 66653211 123334443333 3333333221 123
Q ss_pred HHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccCC
Q 002132 785 LLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGI 864 (961)
Q Consensus 785 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 864 (961)
.++.++..+.+|..++++.|.+.. +|..+.++++|+.|+|++|.+.+---..+.-.+|+.|++++|. +..+|...
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~av--- 287 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAV--- 287 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHH---
Confidence 445667777899999999999887 9999999999999999999876544456777899999999988 77777643
Q ss_pred cccCcCcccceeeccccc-cccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEccccccccc
Q 002132 865 EIIDAFPKLKSLTISSML-ELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKH 943 (961)
Q Consensus 865 ~~~~~f~~L~~L~l~~~~-~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~ 943 (961)
-.+++|+.|++.++. ..+.+|.. ++.+.+|+.+...+| +|.-+|.++..|+.|+.|.++.|..+ .+
T Consensus 288 ---cKL~kL~kLy~n~NkL~FeGiPSG--------IGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi-TL 354 (1255)
T KOG0444|consen 288 ---CKLTKLTKLYANNNKLTFEGIPSG--------IGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI-TL 354 (1255)
T ss_pred ---hhhHHHHHHHhccCcccccCCccc--------hhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee-ec
Confidence 478999999998762 22334443 448899999999887 59999999999999999999877654 46
Q ss_pred ccCCCCcccceEEe
Q 002132 944 YRGGTEKTGLKYHT 957 (961)
Q Consensus 944 ~~~~~~~~~l~~~~ 957 (961)
|++.-.++.++.+.
T Consensus 355 PeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLD 368 (1255)
T ss_pred hhhhhhcCCcceee
Confidence 66655566665553
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2.7e-20 Score=234.49 Aligned_cols=319 Identities=21% Similarity=0.255 Sum_probs=234.0
Q ss_pred hhHHHhhcCCceeEEecCCCCCCC-CccccccCccccccC-ccceEEecCCcccccchhhhccCCCcEEeecCccccccc
Q 002132 591 ILEELFRESTSLRALDFWGSYDVS-PFWTLKIPRNIEKLV-HLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEEL 668 (961)
Q Consensus 591 ~~~~~~~~~~~Lr~L~L~~~~~~~-~~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~l 668 (961)
+....|..|++|+.|.+..+.... ......+|..+..++ +||+|++.++.++.+|..+ .+.+|+.|++++|. +..+
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L 626 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKL 626 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-cccc
Confidence 345568999999999997653100 001235677777775 6999999999999999988 68999999999998 8889
Q ss_pred chhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChh
Q 002132 669 PEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVG 748 (961)
Q Consensus 669 p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~ 748 (961)
|.++..+++|+.|+++++..+..+|. ++.+++|++|. ..++......+..+..+++|+.|++.+|..++.++.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~----L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-- 699 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK----LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-- 699 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE----ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC--
Confidence 99999999999999999877777774 88899999998 333333334567788899999999988877666553
Q ss_pred hhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCcc--------------
Q 002132 749 EAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWL-------------- 814 (961)
Q Consensus 749 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~-------------- 814 (961)
.+ ++++|+.|.+++|.... .++ ..+++|+.|+|+++.+.. +|..+
T Consensus 700 -----~i-~l~sL~~L~Lsgc~~L~-----------~~p---~~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 700 -----GI-NLKSLYRLNLSGCSRLK-----------SFP---DISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMK 758 (1153)
T ss_pred -----cC-CCCCCCEEeCCCCCCcc-----------ccc---cccCCcCeeecCCCcccc-ccccccccccccccccccc
Confidence 11 56788888887764321 011 113466666666666554 55432
Q ss_pred ----------------ccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCCcccCcCcccceee
Q 002132 815 ----------------MSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLT 877 (961)
Q Consensus 815 ----------------~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~ 877 (961)
..+++|+.|+|++|.....+|. ++++++|+.|+|++|..++.+|... .+++|+.|+
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~ 831 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLD 831 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEE
Confidence 1235677777777776666665 7788888888888887777776532 467888888
Q ss_pred ccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEcccccccccccCCCCcccceEEe
Q 002132 878 ISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKHYRGGTEKTGLKYHT 957 (961)
Q Consensus 878 l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~ 957 (961)
|++|..+..++. ..++|+.|++.++ .++.+|..+..+++|+.|++.+|+++..++.....+++|+.+.
T Consensus 832 Ls~c~~L~~~p~-----------~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 832 LSGCSRLRTFPD-----------ISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred CCCCCccccccc-----------cccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 888877665542 3467888888886 4788898888999999999999999998877666666665554
Q ss_pred c
Q 002132 958 F 958 (961)
Q Consensus 958 ~ 958 (961)
+
T Consensus 900 l 900 (1153)
T PLN03210 900 F 900 (1153)
T ss_pred c
Confidence 3
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=8.7e-22 Score=199.88 Aligned_cols=142 Identities=26% Similarity=0.334 Sum_probs=88.2
Q ss_pred eEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccC
Q 002132 550 RHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLV 629 (961)
Q Consensus 550 r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~ 629 (961)
..+.++.+.....+..+.++..+..+.++.+..+ ..++ -..+...|+.|++++|. ...+|++|+.+.
T Consensus 71 ~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls------~lp~-~i~s~~~l~~l~~s~n~------~~el~~~i~~~~ 137 (565)
T KOG0472|consen 71 TVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS------ELPE-QIGSLISLVKLDCSSNE------LKELPDSIGRLL 137 (565)
T ss_pred eEEEeccchhhhCCHHHHHHHHHHHhhcccchHh------hccH-HHhhhhhhhhhhccccc------eeecCchHHHHh
Confidence 3344444444444555555666666665555422 2233 24556667777777776 666777777777
Q ss_pred ccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 630 HLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 630 ~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
.|..|+..+|++..+|..+.++..|..|++.+|. +..+|+....++.|+||++..| .+..+|+.++.|.+|..|.
T Consensus 138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLY 212 (565)
T ss_pred hhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHH
Confidence 7777777777777777777777777777777766 5566665555777777776665 3566666666666666555
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=3.8e-20 Score=188.09 Aligned_cols=267 Identities=24% Similarity=0.282 Sum_probs=197.8
Q ss_pred cCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 598 ESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 598 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
.-..|..|++++|. +..+.+.+.+|..|.+|++..|.+..+|++|+.+..++.|+.++|+ +.++|+.++.+.+
T Consensus 43 ~qv~l~~lils~N~------l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~ 115 (565)
T KOG0472|consen 43 EQVDLQKLILSHND------LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLIS 115 (565)
T ss_pred hhcchhhhhhccCc------hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhh
Confidence 34556677777776 6666677777777888888888777888888888888888888777 7777877888888
Q ss_pred CceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCC
Q 002132 678 MKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDK 757 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~ 757 (961)
|++|+++.|. ...+|++|+.+..|..|+ ..++.+... +..+..+.+|..|...++......++
T Consensus 116 l~~l~~s~n~-~~el~~~i~~~~~l~dl~----~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~~l~~~----------- 178 (565)
T KOG0472|consen 116 LVKLDCSSNE-LKELPDSIGRLLDLEDLD----ATNNQISSL-PEDMVNLSKLSKLDLEGNKLKALPEN----------- 178 (565)
T ss_pred hhhhhccccc-eeecCchHHHHhhhhhhh----ccccccccC-chHHHHHHHHHHhhccccchhhCCHH-----------
Confidence 8888877775 566777777777777776 444444332 34455555555555555443222111
Q ss_pred CCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCC
Q 002132 758 KKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPL 837 (961)
Q Consensus 758 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l 837 (961)
.-.+..|++|+...|.... +|..++.+.+|..|+|..|++ ..+|.|
T Consensus 179 --------------------------------~i~m~~L~~ld~~~N~L~t-lP~~lg~l~~L~~LyL~~Nki-~~lPef 224 (565)
T KOG0472|consen 179 --------------------------------HIAMKRLKHLDCNSNLLET-LPPELGGLESLELLYLRRNKI-RFLPEF 224 (565)
T ss_pred --------------------------------HHHHHHHHhcccchhhhhc-CChhhcchhhhHHHHhhhccc-ccCCCC
Confidence 1113456777777777666 899999999999999999876 467789
Q ss_pred CCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCc
Q 002132 838 GKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLK 917 (961)
Q Consensus 838 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 917 (961)
+++..|++|.+..|. ++.++.+.. +.+++|..|++.++ ++++.|.+.. .+.+|++|+++++. +.
T Consensus 225 ~gcs~L~Elh~g~N~-i~~lpae~~-----~~L~~l~vLDLRdN-klke~Pde~c--------lLrsL~rLDlSNN~-is 288 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQ-IEMLPAEHL-----KHLNSLLVLDLRDN-KLKEVPDEIC--------LLRSLERLDLSNND-IS 288 (565)
T ss_pred CccHHHHHHHhcccH-HHhhHHHHh-----cccccceeeecccc-ccccCchHHH--------HhhhhhhhcccCCc-cc
Confidence 999999999998776 666665432 57899999999998 7888887655 78899999999885 89
Q ss_pred CCCCCCCCCCCccEEEEccccc
Q 002132 918 ALPDHIHQTTTLKELRIWACEL 939 (961)
Q Consensus 918 ~lp~~~~~l~~L~~L~l~~~~~ 939 (961)
.+|..++++ +|+.|.+.|||.
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cCCcccccc-eeeehhhcCCch
Confidence 999999999 999999999986
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=3.4e-18 Score=191.79 Aligned_cols=104 Identities=24% Similarity=0.348 Sum_probs=84.6
Q ss_pred CCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhh
Q 002132 569 VKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETL 648 (961)
Q Consensus 569 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i 648 (961)
.-+|++|.++++.... .+. -+..+.+|+.|+++.|. +..+|.++.++.+|+||+|.+|.+..+|.++
T Consensus 44 ~v~L~~l~lsnn~~~~------fp~-~it~l~~L~~ln~s~n~------i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~ 110 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISS------FPI-QITLLSHLRQLNLSRNY------IRSVPSSCSNMRNLQYLNLKNNRLQSLPASI 110 (1081)
T ss_pred eeeeEEeecccccccc------CCc-hhhhHHHHhhcccchhh------HhhCchhhhhhhcchhheeccchhhcCchhH
Confidence 4458888888887542 122 25667889999999998 8889988999999999999999999999999
Q ss_pred hccCCCcEEeecCcccccccchhhhcccCCceeecCCc
Q 002132 649 CELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRT 686 (961)
Q Consensus 649 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 686 (961)
..+.+|+.||+++|. ...+|..+..+..+..+..++|
T Consensus 111 ~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred Hhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcc
Confidence 999999999999988 7778887777777777777776
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=7.6e-18 Score=189.02 Aligned_cols=321 Identities=22% Similarity=0.210 Sum_probs=198.7
Q ss_pred HHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhh
Q 002132 593 EELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGI 672 (961)
Q Consensus 593 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i 672 (961)
-++..+.-.|++||+++|. +...|..|..+.+|+.|++++|.|..+|.+++++.+|++|.|.+|. +..+|.++
T Consensus 38 l~~~~~~v~L~~l~lsnn~------~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~ 110 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQ------ISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASI 110 (1081)
T ss_pred hHHhhheeeeEEeeccccc------cccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhH
Confidence 3445555569999999999 8999999999999999999999999999999999999999999987 89999999
Q ss_pred hcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCC----------------cccccccccCCCc-CCc
Q 002132 673 GKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGR----------------KACWFESLKNLKH-LQV 735 (961)
Q Consensus 673 ~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~----------------~~~~l~~L~~L~~-L~~ 735 (961)
..+++|++|+++.|. ...+|.-|..++.+..+. ..+|..... ....+.+..+|++ |++
T Consensus 111 ~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~----~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldL 185 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELA----ASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDL 185 (1081)
T ss_pred Hhhhcccccccchhc-cCCCchhHHhhhHHHHHh----hhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeec
Confidence 999999999999996 566777666666655554 222200000 0011112222332 333
Q ss_pred cccccCCCCCChhhhh--ccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCc
Q 002132 736 CGIRRLGDVSDVGEAK--RLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNW 813 (961)
Q Consensus 736 ~~~~~~~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~ 813 (961)
..+... +.+..... .........|..+.+++....... ...+... ....-..+.+|+.++++.+.+.. +|.|
T Consensus 186 r~N~~~--~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~-a~~n~l~--~~~~~p~p~nl~~~dis~n~l~~-lp~w 259 (1081)
T KOG0618|consen 186 RYNEME--VLDLSNLANLEVLHCERNQLSELEISGPSLTALY-ADHNPLT--TLDVHPVPLNLQYLDISHNNLSN-LPEW 259 (1081)
T ss_pred ccchhh--hhhhhhccchhhhhhhhcccceEEecCcchheee-eccCcce--eeccccccccceeeecchhhhhc-chHH
Confidence 333222 00000000 001111222333333322111000 0001111 01111235689999999999888 9999
Q ss_pred cccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccc-
Q 002132 814 LMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGIT- 892 (961)
Q Consensus 814 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~- 892 (961)
+..+.+|+.|....|.+...+..+....+|+.|.+..|. +++++... +++.+|+.|+|..+ +|.+++...-
T Consensus 260 i~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~l------e~~~sL~tLdL~~N-~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFL------EGLKSLRTLDLQSN-NLPSLPDNFLA 331 (1081)
T ss_pred HHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcc------cccceeeeeeehhc-cccccchHHHh
Confidence 999999999999988774433336666777777777666 66665432 34666666666544 2333322100
Q ss_pred -----------------cccccccccccccceecccccccCcCCCCCCCCCCCccEEEEccccc
Q 002132 893 -----------------RTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACEL 939 (961)
Q Consensus 893 -----------------~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~ 939 (961)
.........++.|+.|++.+|..-...-+.+.+.++|+.|++++|..
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 00011123678899999998863333323357789999999999843
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=3.9e-15 Score=173.60 Aligned_cols=261 Identities=21% Similarity=0.217 Sum_probs=177.6
Q ss_pred CceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCc
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMK 679 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 679 (961)
..-.+|+|+++. +..+|..+. .+|+.|++++|.++.+|.. +++|++|++++|. +..+|.. .++|+
T Consensus 201 ~~~~~LdLs~~~------LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESG------LTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLL 265 (788)
T ss_pred CCCcEEEcCCCC------CCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccc
Confidence 446678888887 777887765 3788888888888888753 5788888888886 6677753 35778
Q ss_pred eeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCC
Q 002132 680 HLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKK 759 (961)
Q Consensus 680 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 759 (961)
+|++++|. +..+|... ++|+.|. ...|.+... +. .+++|+.|++++|.... ++.. ..
T Consensus 266 ~L~Ls~N~-L~~Lp~lp---~~L~~L~----Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l----------p~ 322 (788)
T PRK15387 266 ELSIFSNP-LTHLPALP---SGLCKLW----IFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL----------PS 322 (788)
T ss_pred eeeccCCc-hhhhhhch---hhcCEEE----CcCCccccc-cc---cccccceeECCCCcccc-CCCC----------cc
Confidence 88888875 45555432 3455554 344433322 21 23567777777765432 2211 13
Q ss_pred CCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCC
Q 002132 760 YLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGK 839 (961)
Q Consensus 760 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 839 (961)
+|+.|.++.|.... ++ ..+++|+.|+|++|.+.. +|.. .++|+.|++++|.+. .+|.+
T Consensus 323 ~L~~L~Ls~N~L~~------------LP---~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l-- 380 (788)
T PRK15387 323 ELCKLWAYNNQLTS------------LP---TLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL-- 380 (788)
T ss_pred cccccccccCcccc------------cc---ccccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc--
Confidence 46667777655431 11 123589999999999887 7763 457888899988765 35543
Q ss_pred ccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcCC
Q 002132 840 LQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKAL 919 (961)
Q Consensus 840 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l 919 (961)
.++|+.|++++|. ++.++. .+++|+.|+++++ .+..++. .+.+|+.|++++|. ++.+
T Consensus 381 ~~~L~~LdLs~N~-Lt~LP~---------l~s~L~~LdLS~N-~LssIP~-----------l~~~L~~L~Ls~Nq-Lt~L 437 (788)
T PRK15387 381 PSGLKELIVSGNR-LTSLPV---------LPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRNQ-LTRL 437 (788)
T ss_pred ccccceEEecCCc-ccCCCC---------cccCCCEEEccCC-cCCCCCc-----------chhhhhhhhhccCc-cccc
Confidence 3578999999886 554442 2468999999987 4665543 24578899999875 8899
Q ss_pred CCCCCCCCCccEEEEccccccccc
Q 002132 920 PDHIHQTTTLKELRIWACELLGKH 943 (961)
Q Consensus 920 p~~~~~l~~L~~L~l~~~~~l~~~ 943 (961)
|..+.++++|+.|++++|+.-...
T Consensus 438 P~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred ChHHhhccCCCeEECCCCCCCchH
Confidence 998888999999999999875543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=3.6e-14 Score=166.91 Aligned_cols=90 Identities=21% Similarity=0.281 Sum_probs=53.5
Q ss_pred ceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCce
Q 002132 601 SLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKH 680 (961)
Q Consensus 601 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 680 (961)
+..+|+++++. +..+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++|. +..+|..+. .+|+.
T Consensus 179 ~~~~L~L~~~~------LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 179 NKTELRLKILG------LTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQE 245 (754)
T ss_pred CceEEEeCCCC------cCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccE
Confidence 45666666665 566665543 366777777777777766554 467777777665 556665443 35677
Q ss_pred eecCCccccccccccCCCCCCCCcCC
Q 002132 681 LLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 681 L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
|++++|. +..+|..+. ++|+.|+
T Consensus 246 L~Ls~N~-L~~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 246 MELSINR-ITELPERLP--SALQSLD 268 (754)
T ss_pred EECcCCc-cCcCChhHh--CCCCEEE
Confidence 7776664 345554432 2444444
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.44 E-value=9.2e-12 Score=156.86 Aligned_cols=295 Identities=15% Similarity=0.161 Sum_probs=182.3
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeC-CcccHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVS-DPFEQFRVAKA 260 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~ 260 (961)
.+.+|-|.. |.+.|... ...+++.|.|++|.||||++..+... ++.++|+++. ...++..+...
T Consensus 13 ~~~~~~R~r----l~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRER----LLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchH----HHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 445666664 44444322 25689999999999999999998862 2269999996 44566677777
Q ss_pred HHHHcCCCCCC-------------CCCHHHHHHHHHHHhC--CceEEEEEeCCCCCCccChhhhHHhh-hCCCCCcEEEE
Q 002132 261 IAEALGIPSSN-------------LGEFQSLLKLISESIT--GKRFLLVLDDVWDGDCIKWEPFYLCL-KNGLHGSKILV 324 (961)
Q Consensus 261 i~~~l~~~~~~-------------~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l-~~~~~gs~iiv 324 (961)
++..+...... ..+...+...+...+. +.+++|||||+...+......+..++ .....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77777421111 0122333333333333 67899999999887544544444444 44456678889
Q ss_pred Eccchhhhh--hhccCCcceEEcC----CCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhh
Q 002132 325 TTRKKSVAS--MMGSTDTDIITVM----ELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLM 398 (961)
Q Consensus 325 TtR~~~~~~--~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 398 (961)
|||...-.. ..... ....++. +|+.+|+.++|....... -..+...+|.+.|+|.|+++..++..+
T Consensus 158 ~sR~~~~~~~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 158 LSRNLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EeCCCCCCchHhHHhc-CcceecCHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999842111 11111 1345555 999999999998754211 113457889999999999999988777
Q ss_pred ccCCCHHHHHHHhcCcccchhh-hhhhHHHHHH-HhhcCCChhhHHHHhhhccCCCCCccChHHHHHHHHHcCCcccCCC
Q 002132 399 RSKQIEEEWERISNSDLWRVEE-MEKGVLSSLL-LSYNDLPSKVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAKQN 476 (961)
Q Consensus 399 ~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~-~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~ 476 (961)
......... . .+.+.. ....+...+. -.++.||++.+..+...|+++ .++.+-+-... | .
T Consensus 230 ~~~~~~~~~--~----~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~---~--- 291 (903)
T PRK04841 230 RQNNSSLHD--S----ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G---E--- 291 (903)
T ss_pred hhCCCchhh--h----hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C---C---
Confidence 544311000 0 011111 1123444443 347899999999999999986 34433222111 1 1
Q ss_pred CcHHHHHHHHHHHHHhCCCcccccccCCCceeeEeechhHHHHHHhhc
Q 002132 477 KEMETIGEEYFSILASRSFFQEFEKSYDNRIIECKMHDIVHDFARFVS 524 (961)
Q Consensus 477 ~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mHdlv~~~a~~~~ 524 (961)
+.+...+++|.+.+++..... +....|+.|++++++.+...
T Consensus 292 ----~~~~~~L~~l~~~~l~~~~~~---~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ----ENGQMRLEELERQGLFIQRMD---DSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CcHHHHHHHHHHCCCeeEeec---CCCCEEehhHHHHHHHHHHH
Confidence 124677999999999753211 11235788999999998764
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=3.4e-13 Score=157.49 Aligned_cols=78 Identities=24% Similarity=0.260 Sum_probs=43.7
Q ss_pred CCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCC
Q 002132 599 STSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINM 678 (961)
Q Consensus 599 ~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 678 (961)
+++|++|+|++|. +..+|.. .++|++|+|++|.++.+|... .+|+.|++++|. +..+|.. +++|
T Consensus 241 p~~Lk~LdLs~N~------LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L 304 (788)
T PRK15387 241 PPELRTLEVSGNQ------LTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGL 304 (788)
T ss_pred CCCCcEEEecCCc------cCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCCc-ccccccc---cccc
Confidence 4566666666665 5555542 245666666666666665422 445566666665 5555542 3556
Q ss_pred ceeecCCcccccccc
Q 002132 679 KHLLNYRTDSLRYMP 693 (961)
Q Consensus 679 ~~L~l~~~~~~~~~p 693 (961)
++|++++|. +..+|
T Consensus 305 ~~LdLS~N~-L~~Lp 318 (788)
T PRK15387 305 QELSVSDNQ-LASLP 318 (788)
T ss_pred ceeECCCCc-cccCC
Confidence 666666663 33344
No 19
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.41 E-value=7.3e-11 Score=133.04 Aligned_cols=319 Identities=16% Similarity=0.103 Sum_probs=184.8
Q ss_pred CCCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 180 IDEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
..+..++||+++++++...+...-. ......+.|+|++|+|||++++.++++.......-.++++++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3556899999999999999854321 12345678999999999999999999653332223567777777778889999
Q ss_pred HHHHHcCCC-C-CCCCCHHHHHHHHHHHhC--CceEEEEEeCCCCCC-ccChhhhHHhhh--CCCCCcE--EEEEccchh
Q 002132 260 AIAEALGIP-S-SNLGEFQSLLKLISESIT--GKRFLLVLDDVWDGD-CIKWEPFYLCLK--NGLHGSK--ILVTTRKKS 330 (961)
Q Consensus 260 ~i~~~l~~~-~-~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~-~~~~~~l~~~l~--~~~~gs~--iivTtR~~~ 330 (961)
.+++++... . ....+.+++...+.+.+. ++..+||||+++... ....+.+...+. ....+++ +|.++....
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 999999762 2 222345667777777765 457899999998743 112223332222 1122333 566665544
Q ss_pred hhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHHcCCC--CCCChhhHHHHHHHHHhhcCCCchhHHHHHHhh--c--
Q 002132 331 VASMMG-----STDTDIITVMELTEEECWSLFKRLAFFGP--SINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLM--R-- 399 (961)
Q Consensus 331 ~~~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l--~-- 399 (961)
+..... ......+.+.+++.++..+++..++.... ..-.+..++.+++......|..+.|+..+-... .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 322211 11125689999999999999988763221 111222333333333333455677776654322 1
Q ss_pred c-CC--CHHHHHHHhcCcccchhhhhhhHHHHHHHhhcCCChhhHHHHhhhccCCC--CCccChHHHHHH--HHHcCCcc
Q 002132 400 S-KQ--IEEEWERISNSDLWRVEEMEKGVLSSLLLSYNDLPSKVKICFSYCAVFPK--NYNIKKDELLTL--WMAQGYLS 472 (961)
Q Consensus 400 ~-~~--~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~--~~~i~~~~Li~~--w~a~g~i~ 472 (961)
. .. +.+......+.. -.....-.+..||.+.|..+..++..-+ ...+...++... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 1 11 233443332221 1223345688999988877665553321 134555555533 22222111
Q ss_pred cCCCCcHHHHHHHHHHHHHhCCCcccccc--cCCCceeeEeec
Q 002132 473 AKQNKEMETIGEEYFSILASRSFFQEFEK--SYDNRIIECKMH 513 (961)
Q Consensus 473 ~~~~~~~~~~~~~~~~~L~~~~li~~~~~--~~~~~~~~~~mH 513 (961)
.. .+ ...-..|+.+|...|+|+.... +..|+.+.++++
T Consensus 335 ~~--~~-~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~~~~ 374 (394)
T PRK00411 335 EP--RT-HTRFYEYINKLDMLGIINTRYSGKGGRGRTRLISLS 374 (394)
T ss_pred Cc--Cc-HHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEEEec
Confidence 10 11 1224569999999999986532 334566666554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=7.8e-13 Score=155.75 Aligned_cols=130 Identities=24% Similarity=0.359 Sum_probs=80.0
Q ss_pred eEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccC
Q 002132 550 RHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLV 629 (961)
Q Consensus 550 r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~ 629 (961)
..+.+........+..+ .+.|+.|.+.+|.+. .++..+ +++|++|++++|. +..+|..+. .
T Consensus 181 ~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lt------sLP~~l---~~nL~~L~Ls~N~------LtsLP~~l~--~ 241 (754)
T PRK15370 181 TELRLKILGLTTIPACI--PEQITTLILDNNELK------SLPENL---QGNIKTLYANSNQ------LTSIPATLP--D 241 (754)
T ss_pred eEEEeCCCCcCcCCccc--ccCCcEEEecCCCCC------cCChhh---ccCCCEEECCCCc------cccCChhhh--c
Confidence 44445444444333322 246777777777543 223332 2478888888877 667776553 3
Q ss_pred ccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 630 HLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 630 ~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
+|+.|+|++|.++.+|..+. .+|++|++++|. +..+|..+. ++|++|++++|. +..+|..+. ++|+.|+
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~ 310 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLN 310 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHH
Confidence 68888888888888877664 478888888776 566776553 478888887774 445554332 2444444
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.39 E-value=9.8e-14 Score=165.78 Aligned_cols=330 Identities=26% Similarity=0.314 Sum_probs=218.8
Q ss_pred cccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcc-ccccCccceEEecCC-cccc
Q 002132 566 ICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRN-IEKLVHLRYLNLSCQ-NIRK 643 (961)
Q Consensus 566 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~-~i~~ 643 (961)
.......|...+.++.... ... -..++.|++|-+.+|.. ++..++.. |..+++|++|||++| .+.+
T Consensus 519 ~~~~~~~rr~s~~~~~~~~-------~~~-~~~~~~L~tLll~~n~~----~l~~is~~ff~~m~~LrVLDLs~~~~l~~ 586 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEH-------IAG-SSENPKLRTLLLQRNSD----WLLEISGEFFRSLPLLRVLDLSGNSSLSK 586 (889)
T ss_pred ccchhheeEEEEeccchhh-------ccC-CCCCCccceEEEeecch----hhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence 3445667877777765321 111 23456799999988852 14455543 677999999999966 4889
Q ss_pred cchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccc
Q 002132 644 LPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACW 723 (961)
Q Consensus 644 Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 723 (961)
||++|++|.+|++|+++++. +..+|.++.+|++|.+|++..+..+..+|..+..|++|++|..+.....+ ....
T Consensus 587 LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-----~~~~ 660 (889)
T KOG4658|consen 587 LPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-----DKLL 660 (889)
T ss_pred CChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-----chhh
Confidence 99999999999999999998 88999999999999999999987666666556669999999976543111 2445
Q ss_pred cccccCCCcCCccccccCCCCCChhhhhccccCCCCCCC----eEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceE
Q 002132 724 FESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS----CLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKEL 799 (961)
Q Consensus 724 l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 799 (961)
+.++.+|++|....+..... ...+ .+..+..|. .+.+..+. .......+..+.+|+.|
T Consensus 661 l~el~~Le~L~~ls~~~~s~--~~~e----~l~~~~~L~~~~~~l~~~~~~------------~~~~~~~~~~l~~L~~L 722 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISSV--LLLE----DLLGMTRLRSLLQSLSIEGCS------------KRTLISSLGSLGNLEEL 722 (889)
T ss_pred HHhhhcccchhhheeecchh--HhHh----hhhhhHHHHHHhHhhhhcccc------------cceeecccccccCcceE
Confidence 67777777777765543222 0000 112222222 22222111 12234456678899999
Q ss_pred EEeeecCCCCCCCccc-----c-ccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccC---Cc-ccCc
Q 002132 800 EIRFYRGNTVFPNWLM-----S-LTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLG---IE-IIDA 869 (961)
Q Consensus 800 ~l~~~~~~~~lp~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~---~~-~~~~ 869 (961)
.+.++.+......|.. . ++++..+.+.+|.....+.+.-..|+|+.|.+..|..++.+-...-. .. ..-.
T Consensus 723 ~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~ 802 (889)
T KOG4658|consen 723 SILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILP 802 (889)
T ss_pred EEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEec
Confidence 9999988652233322 2 56778888888877777766667899999999999877654322111 11 1135
Q ss_pred Cccccee-eccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEccc-ccccccccC
Q 002132 870 FPKLKSL-TISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWAC-ELLGKHYRG 946 (961)
Q Consensus 870 f~~L~~L-~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~-~~l~~~~~~ 946 (961)
|+++..+ .+.+.+.+..+....- .+++|+.+.+..||+++.+|. +.++.+.+| +.+...+..
T Consensus 803 f~~~~~l~~~~~l~~l~~i~~~~l--------~~~~l~~~~ve~~p~l~~~P~-------~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 803 FNKLEGLRMLCSLGGLPQLYWLPL--------SFLKLEELIVEECPKLGKLPL-------LSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred ccccccceeeecCCCCceeEeccc--------CccchhheehhcCcccccCcc-------ccccceeccccceeecCCc
Confidence 6677777 4666666666554433 577799999999998776654 555667775 555555543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=6e-14 Score=126.65 Aligned_cols=83 Identities=27% Similarity=0.359 Sum_probs=57.9
Q ss_pred cCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 598 ESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 598 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
.+.+...|-|++|. +..+|..|..|.+|+.|++.+|+|+++|.+|+.|++|+.|+++-|. +..+|.+|+.++-
T Consensus 31 ~~s~ITrLtLSHNK------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~ 103 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPA 103 (264)
T ss_pred chhhhhhhhcccCc------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCch
Confidence 45566667777776 6667777777777777777777777777777777777777776665 6667777777777
Q ss_pred CceeecCCcc
Q 002132 678 MKHLLNYRTD 687 (961)
Q Consensus 678 L~~L~l~~~~ 687 (961)
|+.|++.+|+
T Consensus 104 levldltynn 113 (264)
T KOG0617|consen 104 LEVLDLTYNN 113 (264)
T ss_pred hhhhhccccc
Confidence 7777776664
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=5.7e-14 Score=126.80 Aligned_cols=161 Identities=20% Similarity=0.288 Sum_probs=127.3
Q ss_pred cccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccc
Q 002132 566 ICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLP 645 (961)
Q Consensus 566 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp 645 (961)
+..+.++..|.++.+... .+++. +..+++|.+|++++|. +.++|.+|..|+.||.|+++-|.+..+|
T Consensus 29 Lf~~s~ITrLtLSHNKl~------~vppn-ia~l~nlevln~~nnq------ie~lp~~issl~klr~lnvgmnrl~~lp 95 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT------VVPPN-IAELKNLEVLNLSNNQ------IEELPTSISSLPKLRILNVGMNRLNILP 95 (264)
T ss_pred ccchhhhhhhhcccCcee------ecCCc-HHHhhhhhhhhcccch------hhhcChhhhhchhhhheecchhhhhcCc
Confidence 344566666667666532 22343 6778999999999999 9999999999999999999999999999
Q ss_pred hhhhccCCCcEEeecCcccc-cccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCccccc
Q 002132 646 ETLCELYNLEKLYITRCLYL-EELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWF 724 (961)
Q Consensus 646 ~~i~~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l 724 (961)
..++.++-|+.|||++|+.. ..+|..|..|.-|+-|+++.|. ...+|..+++|++||.|. ...+.+.. .+..+
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~----lrdndll~-lpkei 169 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILS----LRDNDLLS-LPKEI 169 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEe----eccCchhh-CcHHH
Confidence 99999999999999998733 4689999999999999999985 678999999999999988 55543322 35567
Q ss_pred ccccCCCcCCccccccCCCCC
Q 002132 725 ESLKNLKHLQVCGIRRLGDVS 745 (961)
Q Consensus 725 ~~L~~L~~L~~~~~~~~~~~~ 745 (961)
+.|..|+.|.+.++...-..|
T Consensus 170 g~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred HHHHHHHHHhcccceeeecCh
Confidence 778888888887776544333
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=9.3e-14 Score=142.04 Aligned_cols=285 Identities=21% Similarity=0.221 Sum_probs=171.5
Q ss_pred CccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecC-Ccccccchh-
Q 002132 571 RIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSC-QNIRKLPET- 647 (961)
Q Consensus 571 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~-~~i~~Lp~~- 647 (961)
....+.+..|.+. .+++.+|+.++.||.|||++|. +..| |..|..|..|-.|-+.+ |.|+.+|..
T Consensus 68 ~tveirLdqN~I~------~iP~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS------SIPPGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cceEEEeccCCcc------cCChhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 3455666666543 5788889999999999999998 7766 77888888887776655 889999876
Q ss_pred hhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccc-cCCCCCCCCcCCceEeCCCCCcCCCccccccc
Q 002132 648 LCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPV-GIGRLTGLRTLDEFHVIGGGGVDGRKACWFES 726 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~ 726 (961)
|++|..||.|.+..|+.....+..++.|++|..|.+..|. ...++. .+..+.++++++. ..+ .+..
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhl----A~n--------p~ic 202 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHL----AQN--------PFIC 202 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhh----hcC--------cccc
Confidence 7899999999999988555556678899999999988874 556666 4777888888772 222 1222
Q ss_pred ccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecC
Q 002132 727 LKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRG 806 (961)
Q Consensus 727 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 806 (961)
..+|+.+.-..-.. +. .+..........+.+... .+.....+.+.+...++ .+. +.+..
T Consensus 203 dCnL~wla~~~a~~---~i--------etsgarc~~p~rl~~~Ri-------~q~~a~kf~c~~esl~s--~~~-~~d~~ 261 (498)
T KOG4237|consen 203 DCNLPWLADDLAMN---PI--------ETSGARCVSPYRLYYKRI-------NQEDARKFLCSLESLPS--RLS-SEDFP 261 (498)
T ss_pred ccccchhhhHHhhc---hh--------hcccceecchHHHHHHHh-------cccchhhhhhhHHhHHH--hhc-cccCc
Confidence 33443332100000 00 000001111111111100 01111222222111110 001 11111
Q ss_pred CCCCCC-ccccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccc
Q 002132 807 NTVFPN-WLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLEL 884 (961)
Q Consensus 807 ~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L 884 (961)
....|. .|..+++|++|+|++|++...-+. +..+..|+.|.|.+|. ++.+...++ .++..|+.|+|.++ ++
T Consensus 262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f-----~~ls~L~tL~L~~N-~i 334 (498)
T KOG4237|consen 262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMF-----QGLSGLKTLSLYDN-QI 334 (498)
T ss_pred CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhh-----hccccceeeeecCC-ee
Confidence 121232 355788999999999887765544 7888888899888877 555544433 46778888888887 44
Q ss_pred cccccccccccccccccccccceeccccccc
Q 002132 885 EEWDYGITRTGNTVINIMPRLSSLTIARCPK 915 (961)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 915 (961)
+.+... .+..+.+|.+|.+..||-
T Consensus 335 t~~~~~-------aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 335 TTVAPG-------AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred EEEecc-------cccccceeeeeehccCcc
Confidence 443321 133567788888877663
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=2e-10 Score=122.31 Aligned_cols=184 Identities=17% Similarity=0.140 Sum_probs=118.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH----HH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLIS----ES 285 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~----~~ 285 (961)
.+++.|+|++|+|||||++.+++.... ..+ .++|+ +....+..+++..|+..++.+... .+...+...+. ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 467899999999999999999985421 111 22333 334457788999999998776433 22222333333 22
Q ss_pred -hCCceEEEEEeCCCCCCccChhhhHHhhhC---CCCCcEEEEEccchhhhhhhc--------cCCcceEEcCCCCHHHH
Q 002132 286 -ITGKRFLLVLDDVWDGDCIKWEPFYLCLKN---GLHGSKILVTTRKKSVASMMG--------STDTDIITVMELTEEEC 353 (961)
Q Consensus 286 -l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtR~~~~~~~~~--------~~~~~~~~l~~L~~~~~ 353 (961)
..+++.+||+||++..+...++.+...... ......|++|.... ....+. ......+.+.+++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 367889999999998765566666533221 11223445555432 222211 11124678999999999
Q ss_pred HHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhh
Q 002132 354 WSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLM 398 (961)
Q Consensus 354 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 398 (961)
.+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988764332211112235788999999999999999998776
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.28 E-value=1.8e-09 Score=120.43 Aligned_cols=304 Identities=13% Similarity=0.075 Sum_probs=175.4
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhH-hcC---CeEEEEEeCCcccHHH
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK-RKF---DKLLWVCVSDPFEQFR 256 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~s~~~~~~~ 256 (961)
.+..++||++++++|..+|..... ....+.+.|+|++|+|||++++.+++..... ... -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345799999999999999875322 1244578999999999999999999864211 111 2467888877777888
Q ss_pred HHHHHHHHcC---CCCC-CCCCHHHHHHHHHHHhC--CceEEEEEeCCCCCCccChhhhHHhhhC-----CC--CCcEEE
Q 002132 257 VAKAIAEALG---IPSS-NLGEFQSLLKLISESIT--GKRFLLVLDDVWDGDCIKWEPFYLCLKN-----GL--HGSKIL 323 (961)
Q Consensus 257 ~~~~i~~~l~---~~~~-~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~-----~~--~gs~ii 323 (961)
++..|++++. ...+ ...+..++...+.+.+. +++++||||+++.... ....+...+.. .. ....+|
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~-~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG-DDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc-CCcHHHHhHhccccccCCCCCeEEEE
Confidence 9999999983 3222 22234555556666653 5688999999987621 11222222211 11 223445
Q ss_pred EEccchhhhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHHcCC-CCCCChhhHHHHHHHHHhhcCCCchhHHHHH-H
Q 002132 324 VTTRKKSVASMMG-----STDTDIITVMELTEEECWSLFKRLAFFG-PSINDCEKLEQIGRRIAGKFKGLPLAAKTIG-S 396 (961)
Q Consensus 324 vTtR~~~~~~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~-~ 396 (961)
.+|........+. ......+.+.|++.++..+++..++... ....-.++..+....++..+.|.|..+..+. .
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5554443221111 1112568999999999999999886311 1111223334455567777788885443322 1
Q ss_pred hh--c--c-C--CCHHHHHHHhcCcccchhhhhhhHHHHHHHhhcCCChhhHHHHhhhccC--CCCCccChHHHHHHH--
Q 002132 397 LM--R--S-K--QIEEEWERISNSDLWRVEEMEKGVLSSLLLSYNDLPSKVKICFSYCAVF--PKNYNIKKDELLTLW-- 465 (961)
Q Consensus 397 ~l--~--~-~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~f--p~~~~i~~~~Li~~w-- 465 (961)
.. . . . -+.+..+...+.. -.....-++..||.+.|..+..++.. ..+..+...++...+
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 1 1 1 1222222221110 11233456778999888666655421 133456667676644
Q ss_pred HHcCCcccCCCCcHHHHHHHHHHHHHhCCCccccc
Q 002132 466 MAQGYLSAKQNKEMETIGEEYFSILASRSFFQEFE 500 (961)
Q Consensus 466 ~a~g~i~~~~~~~~~~~~~~~~~~L~~~~li~~~~ 500 (961)
+++.+ ... ........+++.+|...|+|....
T Consensus 320 ~~~~~-~~~--~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDI-GVD--PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhc-CCC--CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 22211 111 122345577899999999998754
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=1.7e-12 Score=142.42 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=6.8
Q ss_pred cccceecccccc
Q 002132 903 PRLSSLTIARCP 914 (961)
Q Consensus 903 p~L~~L~l~~c~ 914 (961)
+.|++|++.++|
T Consensus 307 ~~~~~~~~~~~~ 318 (319)
T cd00116 307 NELESLWVKDDS 318 (319)
T ss_pred CchhhcccCCCC
Confidence 556666665543
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.17 E-value=2.2e-10 Score=124.76 Aligned_cols=280 Identities=19% Similarity=0.148 Sum_probs=149.1
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
-.+|+|++..++.+..++...... ....+.+.|+|++|+||||||+.+++.. ...+ .++..+ .......+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKR-GEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhc-CCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHH
Confidence 457999999999998877642110 2245678899999999999999999953 2221 222221 11111222333
Q ss_pred HHHcCCCCC-CCCCH----HHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhhhhc
Q 002132 262 AEALGIPSS-NLGEF----QSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMMG 336 (961)
Q Consensus 262 ~~~l~~~~~-~~~~~----~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~~ 336 (961)
+..+....- -..+. ....+.+...+.+.+..+|+|+....... ...+ .+.+-|..|++...+.....
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~-----~~~l---~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSI-----RLDL---PPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccce-----eecC---CCceEEeecCCcccCCHHHH
Confidence 333221100 00000 01122233333444444444443222100 0001 12344556666544333221
Q ss_pred cCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCCCHHHHHHHhcCccc
Q 002132 337 STDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQIEEEWERISNSDLW 416 (961)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~~~~~~~~ 416 (961)
..-...+++.+++.++..+++.+.+..... .-..+.+..|++.|+|.|-.+..+...+ ..|....+.. .
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~-~ 237 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG-V 237 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC-C
Confidence 111146899999999999999988754322 1224568899999999996555444432 2333222111 0
Q ss_pred chhhhhhhHHHHHHHhhcCCChhhHHHHh-hhccCCCCCccChHHHHHHHHHcCCcccCCCCcHHHHHHHHHH-HHHhCC
Q 002132 417 RVEEMEKGVLSSLLLSYNDLPSKVKICFS-YCAVFPKNYNIKKDELLTLWMAQGYLSAKQNKEMETIGEEYFS-ILASRS 494 (961)
Q Consensus 417 ~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~~~-~L~~~~ 494 (961)
-....-......+...+..|++..+..+. ....|+.+ .+..+.+.... | ...+.+++.++ .|++.+
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~~~ 305 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQQG 305 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHHcC
Confidence 00111223445566778889888777775 66677655 46666654443 1 11223444556 799999
Q ss_pred Ccccc
Q 002132 495 FFQEF 499 (961)
Q Consensus 495 li~~~ 499 (961)
||+..
T Consensus 306 li~~~ 310 (328)
T PRK00080 306 FIQRT 310 (328)
T ss_pred CcccC
Confidence 99743
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.16 E-value=1.6e-10 Score=120.52 Aligned_cols=198 Identities=19% Similarity=0.134 Sum_probs=102.1
Q ss_pred eecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH----
Q 002132 185 ICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA---- 260 (961)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~---- 260 (961)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++++.+.. +..-..++|+.............-
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 799999999999998743 24678999999999999999999843 221114555554443332221111
Q ss_pred ---------HHHHcCCCCC------CCCCHHHHHHHHHHHhC--CceEEEEEeCCCCCC-c-----cChhhhHHhhhC--
Q 002132 261 ---------IAEALGIPSS------NLGEFQSLLKLISESIT--GKRFLLVLDDVWDGD-C-----IKWEPFYLCLKN-- 315 (961)
Q Consensus 261 ---------i~~~l~~~~~------~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~-~-----~~~~~l~~~l~~-- 315 (961)
+...+..... ...........+.+.+. +++.+||+||+.... . .-...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 2222211110 11111222222323332 345999999997654 0 111223333333
Q ss_pred CCCCcEEEEEccchhhhhh-hc-----cCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch
Q 002132 316 GLHGSKILVTTRKKSVASM-MG-----STDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL 389 (961)
Q Consensus 316 ~~~gs~iivTtR~~~~~~~-~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 389 (961)
......+|+++........ .. ......+.+++|+.+++++++...+-.. ..- +...+..++|+..+||+|.
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHH
Confidence 1233344555444443332 11 0112459999999999999999976332 111 1234556999999999999
Q ss_pred hHHH
Q 002132 390 AAKT 393 (961)
Q Consensus 390 ai~~ 393 (961)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.13 E-value=1.4e-09 Score=117.95 Aligned_cols=277 Identities=17% Similarity=0.118 Sum_probs=148.6
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+|||++..++++..++...... ......+.++|++|+|||+||+.+++.. ...+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCchh-HHHHH
Confidence 46999999999998888643211 1234568899999999999999999853 2222 1222211111112 22222
Q ss_pred HHcCCCC----CCCCC-HHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhhhhcc
Q 002132 263 EALGIPS----SNLGE-FQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMMGS 337 (961)
Q Consensus 263 ~~l~~~~----~~~~~-~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~~~ 337 (961)
..+.... ++... .....+.+...+.+.+..+|+|+..... .|. ..+ .+.+-|..||+...+......
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~~---~~~---~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SVR---LDL---PPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--cee---ecC---CCeEEEEecCCccccCHHHHh
Confidence 3322111 00000 0112233444455555555665543321 110 011 124445566776544332211
Q ss_pred CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCCCHHHHHHH--hcCcc
Q 002132 338 TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQIEEEWERI--SNSDL 415 (961)
Q Consensus 338 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~~--~~~~~ 415 (961)
.-...+.+.+++.++..+++.+.+..... . -..+....|++.|+|.|-.+..+...+ |... .+...
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~-~---~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV-E---IEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC-C---cCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 11146899999999999999988753221 1 124567889999999997665554432 2111 11100
Q ss_pred cchhhhhhhHHHHHHHhhcCCChhhHHHHh-hhccCCCCCccChHHHHHHHHHcCCcccCCCCcHHHHHHHHHH-HHHhC
Q 002132 416 WRVEEMEKGVLSSLLLSYNDLPSKVKICFS-YCAVFPKNYNIKKDELLTLWMAQGYLSAKQNKEMETIGEEYFS-ILASR 493 (961)
Q Consensus 416 ~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~~~-~L~~~ 493 (961)
-....-......+...|..++++.+..+. ..+.++.+ .+..+.+.... |- ....++..++ .|+++
T Consensus 217 -it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~--------~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 -INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE--------DADTIEDVYEPYLLQI 283 (305)
T ss_pred -cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC--------CcchHHHhhhHHHHHc
Confidence 00111122333356678889988877766 55666533 45554444332 11 1233566677 69999
Q ss_pred CCcccc
Q 002132 494 SFFQEF 499 (961)
Q Consensus 494 ~li~~~ 499 (961)
+||+..
T Consensus 284 ~li~~~ 289 (305)
T TIGR00635 284 GFLQRT 289 (305)
T ss_pred CCcccC
Confidence 999743
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=1.6e-12 Score=142.54 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=56.6
Q ss_pred hHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccc-------cchhhhccCCCcEEeecCccc
Q 002132 592 LEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRK-------LPETLCELYNLEKLYITRCLY 664 (961)
Q Consensus 592 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-------Lp~~i~~L~~L~~L~L~~~~~ 664 (961)
....+..+..|++|+++++. +++.....++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|..
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred hHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 34456667778888888776 1111123455556666777777777765542 334456666777777777664
Q ss_pred ccccchhhhcccC---CceeecCCcc
Q 002132 665 LEELPEGIGKLIN---MKHLLNYRTD 687 (961)
Q Consensus 665 l~~lp~~i~~L~~---L~~L~l~~~~ 687 (961)
....+..+..+.+ |++|++++|.
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCc
Confidence 3344444554444 6777666663
No 32
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.09 E-value=8.2e-09 Score=117.28 Aligned_cols=299 Identities=18% Similarity=0.205 Sum_probs=190.4
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKA 260 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~ 260 (961)
+...|-|. ++++.|.... +.+++.|..++|.|||||+...+. + ...-..+.|.+.+. +.++..+...
T Consensus 18 ~~~~v~R~----rL~~~L~~~~-----~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRAN-----DYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccH----HHHHHHhcCC-----CceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHH
Confidence 34445444 4555565432 679999999999999999999976 1 22335699999865 5678888888
Q ss_pred HHHHcCCCCCCC-------------CCHHHHHHHHHHHhC--CceEEEEEeCCCCCCccChhh-hHHhhhCCCCCcEEEE
Q 002132 261 IAEALGIPSSNL-------------GEFQSLLKLISESIT--GKRFLLVLDDVWDGDCIKWEP-FYLCLKNGLHGSKILV 324 (961)
Q Consensus 261 i~~~l~~~~~~~-------------~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iiv 324 (961)
++..+..-.+.. .+...+...+...+. .++..+||||..-........ +...+.....+-..||
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 888887433322 233445555555444 458999999987654444444 4444555667889999
Q ss_pred EccchhhhhhhccC-CcceEE----cCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhc
Q 002132 325 TTRKKSVASMMGST-DTDIIT----VMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMR 399 (961)
Q Consensus 325 TtR~~~~~~~~~~~-~~~~~~----l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~ 399 (961)
|||+..-...-.-. .....+ .-.|+.+|+.++|....... -.....+.+.+..+|=+-|+..++=.++
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-------Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP-------LDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC-------CChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 99987532211100 012222 23589999999998864211 1134578899999999999999988888
Q ss_pred cCCCHHHHHHHhcCcccchhhhhhhHHHH-HHHhhcCCChhhHHHHhhhccCCCCCccChHHHHHHHHHcCCcccCCCCc
Q 002132 400 SKQIEEEWERISNSDLWRVEEMEKGVLSS-LLLSYNDLPSKVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAKQNKE 478 (961)
Q Consensus 400 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~ 478 (961)
.+.+.+.-...+. +....+..- ..--++.||+++|..++-||+++. + -..|+..- +
T Consensus 239 ~~~~~~q~~~~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f-~~eL~~~L------------t 295 (894)
T COG2909 239 NNTSAEQSLRGLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---F-NDELCNAL------------T 295 (894)
T ss_pred CCCcHHHHhhhcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---h-hHHHHHHH------------h
Confidence 4443332222111 111112211 123468999999999999999853 1 12333322 1
Q ss_pred HHHHHHHHHHHHHhCCCcc-cccccCCCceeeEeechhHHHHHHhhccc
Q 002132 479 METIGEEYFSILASRSFFQ-EFEKSYDNRIIECKMHDIVHDFARFVSQN 526 (961)
Q Consensus 479 ~~~~~~~~~~~L~~~~li~-~~~~~~~~~~~~~~mHdlv~~~a~~~~~~ 526 (961)
-++-+...+++|.+++|+- +.+. ....|+.|.++.||.+...+.
T Consensus 296 g~~ng~amLe~L~~~gLFl~~Ldd----~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 GEENGQAMLEELERRGLFLQRLDD----EGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred cCCcHHHHHHHHHhCCCceeeecC----CCceeehhHHHHHHHHhhhcc
Confidence 1233667899999999865 3222 235799999999999876543
No 33
>PF05729 NACHT: NACHT domain
Probab=99.02 E-value=2.4e-09 Score=104.78 Aligned_cols=145 Identities=19% Similarity=0.279 Sum_probs=90.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhc----CCeEEEEEeCCcccHH---HHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRK----FDKLLWVCVSDPFEQF---RVAKAIAEALGIPSSNLGEFQSLLKLIS 283 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~l~~~l~ 283 (961)
+++.|+|.+|+||||++++++........ +...+|++........ .+...|..+...... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 57899999999999999999986533332 3467777765544332 344444444332211 1111 111
Q ss_pred H-HhCCceEEEEEeCCCCCCcc-------ChhhhH-HhhhC-CCCCcEEEEEccchhhhhhhccC-CcceEEcCCCCHHH
Q 002132 284 E-SITGKRFLLVLDDVWDGDCI-------KWEPFY-LCLKN-GLHGSKILVTTRKKSVASMMGST-DTDIITVMELTEEE 352 (961)
Q Consensus 284 ~-~l~~kr~LlVlDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~iivTtR~~~~~~~~~~~-~~~~~~l~~L~~~~ 352 (961)
. ..+.++++||+|++++.... .+..+. ..+.. ..++.++|||+|........... ....+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 1 22578999999999775331 123333 23333 25689999999987763322211 11579999999999
Q ss_pred HHHHHHHHH
Q 002132 353 CWSLFKRLA 361 (961)
Q Consensus 353 ~~~lf~~~~ 361 (961)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998764
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.98 E-value=3e-11 Score=124.00 Aligned_cols=131 Identities=20% Similarity=0.245 Sum_probs=107.9
Q ss_pred ccccceeEEEEEecccccc-ccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCC-CCCCCCcccccc
Q 002132 544 SLDEKVRHLMLIIGREASF-RVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWG-SYDVSPFWTLKI 621 (961)
Q Consensus 544 ~~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~-~~~~~~~~~~~l 621 (961)
..+.....|.+..+.+..+ +..|..+++||.|++++|.+. .|-++.|..++.|..|-+.+ |. +..+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is------~I~p~AF~GL~~l~~Lvlyg~Nk------I~~l 131 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS------FIAPDAFKGLASLLSLVLYGNNK------ITDL 131 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh------hcChHhhhhhHhhhHHHhhcCCc------hhhh
Confidence 3566777788888877764 456889999999999999754 55677899999998888887 55 8888
Q ss_pred Cc-cccccCccceEEecCCcccccc-hhhhccCCCcEEeecCcccccccch-hhhcccCCceeecCCcc
Q 002132 622 PR-NIEKLVHLRYLNLSCQNIRKLP-ETLCELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTD 687 (961)
Q Consensus 622 p~-~i~~L~~Lr~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 687 (961)
|. .|+.|..|+.|.+.-|.+..++ ..+..|++|..|.+..|. +..++. .+..+..++++.+..|.
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 85 5789999999999999888654 558899999999999988 777777 78899999999988775
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.97 E-value=1.6e-07 Score=107.69 Aligned_cols=217 Identities=13% Similarity=0.050 Sum_probs=128.8
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhH---hcCC--eEEEEEeCCcccHH
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK---RKFD--KLLWVCVSDPFEQF 255 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f~--~~~wv~~s~~~~~~ 255 (961)
.+..+.||++|+++|...|...-.+ .....++.|+|++|.|||++++.|.+..... .... .+++|++....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 3467899999999999988754321 2233678899999999999999998854211 1112 36778777777888
Q ss_pred HHHHHHHHHcCCCCC-CCCCHHHHHHHHHHHhC---CceEEEEEeCCCCCCccChhhhHHhhhC-CCCCcEEEE--Eccc
Q 002132 256 RVAKAIAEALGIPSS-NLGEFQSLLKLISESIT---GKRFLLVLDDVWDGDCIKWEPFYLCLKN-GLHGSKILV--TTRK 328 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~-~~~~~~~l~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv--TtR~ 328 (961)
.++..|.+++....+ ...........+...+. +...+||||+++......-+.|...+.. ...+++|+| +|..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 899999999854433 22233344444544442 2245999999976432111223333332 224555554 3332
Q ss_pred hhhhh----hhcc-CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhh
Q 002132 329 KSVAS----MMGS-TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLM 398 (961)
Q Consensus 329 ~~~~~----~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 398 (961)
..... .+.. .....+...|++.++-.+++..++......-.+..++-+|+.++...|-.=.||.++-.+.
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 22111 1111 1113467799999999999999885432222334444555555544444555666554444
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.97 E-value=1.8e-08 Score=121.74 Aligned_cols=316 Identities=16% Similarity=0.150 Sum_probs=185.6
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEE---eCCcc---cHHHH
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVC---VSDPF---EQFRV 257 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~---~~~~~ 257 (961)
.++||+.+++.|...+..... +...++.+.|..|||||+|+++|..- +.+.+...+--. ...+. ...+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 368999999999999986653 46679999999999999999999884 333322111111 11111 12234
Q ss_pred HHHHHHHc-------------------CCCCC-------------C----C-----CCHH-----HHHHHHHHHh-CCce
Q 002132 258 AKAIAEAL-------------------GIPSS-------------N----L-----GEFQ-----SLLKLISESI-TGKR 290 (961)
Q Consensus 258 ~~~i~~~l-------------------~~~~~-------------~----~-----~~~~-----~l~~~l~~~l-~~kr 290 (961)
+++++.++ +.... + . ...+ ..+..+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 44444443 11100 0 0 0000 1122233333 3569
Q ss_pred EEEEEeCCCCCCccChhhhHHhhhCCC----CCcEEEEEccchhh-hhh-hccCCcceEEcCCCCHHHHHHHHHHHHcCC
Q 002132 291 FLLVLDDVWDGDCIKWEPFYLCLKNGL----HGSKILVTTRKKSV-ASM-MGSTDTDIITVMELTEEECWSLFKRLAFFG 364 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtR~~~~-~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 364 (961)
.++|+||+.+.|....+-+...+.... ....|..+...... ... ........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999998877655444444333321 11123332222221 111 112233689999999999999998876321
Q ss_pred CCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCC------CHHHHHHHhcCcccchhhhhhhHHHHHHHhhcCCCh
Q 002132 365 PSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQ------IEEEWERISNSDLWRVEEMEKGVLSSLLLSYNDLPS 438 (961)
Q Consensus 365 ~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~------~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 438 (961)
. ....+..+.|+++..|+|+.+..+-..+.... +...|..=. .........++ +...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~-~~i~~~~~~~~-vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSI-ASLGILATTDA-VVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccH-HhcCCchhhHH-HHHHHHHHHhcCCH
Confidence 1 22345688999999999999999998887752 233443211 11111122223 66678899999999
Q ss_pred hhHHHHhhhccCCCCCccChHHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHHhCCCcccccccCCC---ceeeE-eech
Q 002132 439 KVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAKQNKEMETIGEEYFSILASRSFFQEFEKSYDN---RIIEC-KMHD 514 (961)
Q Consensus 439 ~~k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~---~~~~~-~mHd 514 (961)
..+..+...|++. ..|+.+.|...|- ......+...++.|....++...+....+ ....| ..||
T Consensus 309 ~t~~Vl~~AA~iG--~~F~l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 309 TTREVLKAAACIG--NRFDLDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHHhC--ccCCHHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 9999999999995 4566777766652 23445566666666665555432211111 11112 4699
Q ss_pred hHHHHHHhh
Q 002132 515 IVHDFARFV 523 (961)
Q Consensus 515 lv~~~a~~~ 523 (961)
.+++.|-..
T Consensus 377 ~vqqaaY~~ 385 (849)
T COG3899 377 RVQQAAYNL 385 (849)
T ss_pred HHHHHHhcc
Confidence 999887554
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.83 E-value=2e-08 Score=104.79 Aligned_cols=171 Identities=20% Similarity=0.237 Sum_probs=103.9
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
...+++|....+.+.++ .+.+.-+.+||++|+||||||+.+... ....| ..++...+-.+-+++
T Consensus 28 GQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkdlr~ 91 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKDLRE 91 (436)
T ss_pred ChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHHHHH
Confidence 34456666666666555 346777889999999999999999884 33333 333333322222232
Q ss_pred HHHHcCCCCCCCCCHHHHHHHH-HHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEE--Eccchhhh---hh
Q 002132 261 IAEALGIPSSNLGEFQSLLKLI-SESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILV--TTRKKSVA---SM 334 (961)
Q Consensus 261 i~~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~~~---~~ 334 (961)
+++ .- .....|++.+|++|.|+.-+..+-+.+. |.-..|.-|+| ||-++... ..
T Consensus 92 i~e-----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 92 IIE-----------------EARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHH-----------------HHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHH
Confidence 322 22 2233489999999999876544444444 33345766666 66666422 11
Q ss_pred hccCCcceEEcCCCCHHHHHHHHHHHHcCCCCC-C-Chh-hHHHHHHHHHhhcCCCch
Q 002132 335 MGSTDTDIITVMELTEEECWSLFKRLAFFGPSI-N-DCE-KLEQIGRRIAGKFKGLPL 389 (961)
Q Consensus 335 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~-~~~-~~~~~~~~i~~~c~G~PL 389 (961)
.+. ..++.+++|+.+|-.+++.+.+...... . ... -.++....|+..++|--.
T Consensus 152 lSR--~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 152 LSR--ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhh--hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 222 3789999999999999999844222111 1 011 123456678888888654
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.79 E-value=1.4e-07 Score=96.75 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=97.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
.+.+.|+|++|+|||+|++.+++.. ......+.|+.+... .....+ +.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~---~~~~~~---------------------~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKS---QYFSPA---------------------VLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHh---hhhhHH---------------------HHhhcc-c
Confidence 3678999999999999999999953 333445677776421 000011 111122 2
Q ss_pred eEEEEEeCCCCCC-ccChhh-hHHhhhCC-CCCcEEEE-Eccc---------hhhhhhhccCCcceEEcCCCCHHHHHHH
Q 002132 290 RFLLVLDDVWDGD-CIKWEP-FYLCLKNG-LHGSKILV-TTRK---------KSVASMMGSTDTDIITVMELTEEECWSL 356 (961)
Q Consensus 290 r~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iiv-TtR~---------~~~~~~~~~~~~~~~~l~~L~~~~~~~l 356 (961)
.-+||+||+|... ...|+. +...+... ..|..+|| |++. +.+...+... ..++++++++++.+++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g--~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG--EIYQLNDLTDEQKIIV 169 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC--CeeeCCCCCHHHHHHH
Confidence 3489999998743 235653 33334322 23555554 5543 3455555544 6899999999999999
Q ss_pred HHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhh
Q 002132 357 FKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLM 398 (961)
Q Consensus 357 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 398 (961)
+++.++..+- . --+++..-|++.+.|..-.+..+-..+
T Consensus 170 L~~~a~~~~l-~---l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 170 LQRNAYQRGI-E---LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHcCC-C---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9998864432 1 124567889999988776665554433
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.3e-09 Score=112.04 Aligned_cols=213 Identities=20% Similarity=0.145 Sum_probs=125.8
Q ss_pred cccCccceEEecCCcccccch--hhhccCCCcEEeecCcccc--cccchhhhcccCCceeecCCccccccccccCCCCCC
Q 002132 626 EKLVHLRYLNLSCQNIRKLPE--TLCELYNLEKLYITRCLYL--EELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTG 701 (961)
Q Consensus 626 ~~L~~Lr~L~L~~~~i~~Lp~--~i~~L~~L~~L~L~~~~~l--~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~ 701 (961)
.++..||...|.++.+...+. ....|++++.|||++|-.- ..+-.-...|++|+.|+++.|.... | +++.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--~--~~s~-- 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN--F--ISSN-- 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--C--cccc--
Confidence 456677777777777766653 4566777777777776421 1222234466666666666663110 0 0000
Q ss_pred CCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcc
Q 002132 702 LRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNE 781 (961)
Q Consensus 702 L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 781 (961)
.+ ..+. +|+.|.++.|...
T Consensus 192 -~~--------------------~~l~-------------------------------~lK~L~l~~CGls--------- 210 (505)
T KOG3207|consen 192 -TT--------------------LLLS-------------------------------HLKQLVLNSCGLS--------- 210 (505)
T ss_pred -ch--------------------hhhh-------------------------------hhheEEeccCCCC---------
Confidence 00 0123 3444444444332
Q ss_pred hHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCC--cCCCCCCccccceeecccccCceEeCC
Q 002132 782 DDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCE--QLPPLGKLQSLEKLSLTIMRSVKRVGD 859 (961)
Q Consensus 782 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~~~~ 859 (961)
...+...+..+|+|+.|.+.+|.+....-.....+..|+.|+|++|.+.+ ..+..+.||.|..|++..|. +.++..
T Consensus 211 -~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~ 288 (505)
T KOG3207|consen 211 -WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAE 288 (505)
T ss_pred -HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcC
Confidence 34455556677889999998885322112222357789999999988754 34668899999999998776 444421
Q ss_pred c-ccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccc
Q 002132 860 E-CLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCP 914 (961)
Q Consensus 860 ~-~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 914 (961)
- .-.......||+|++|.++.+ +..+|+.... ...+++|+.|.+..++
T Consensus 289 ~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~------l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 289 PDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNH------LRTLENLKHLRITLNY 337 (505)
T ss_pred CCccchhhhcccccceeeecccC-ccccccccch------hhccchhhhhhccccc
Confidence 1 111112257999999999887 5666765433 3467788888776554
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=5.3e-10 Score=120.19 Aligned_cols=102 Identities=33% Similarity=0.534 Sum_probs=78.9
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcc
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKL 675 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 675 (961)
+..|-.|..|.|+.|. +..+|..+++|..|.||+|+.|++..+|..++.|+ |+.|.+++|+ +..+|..|+.+
T Consensus 94 ~~~f~~Le~liLy~n~------~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~ 165 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNC------IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLL 165 (722)
T ss_pred HHHHHHHHHHHHHhcc------ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccc
Confidence 5666777778888877 77788888888888888888888888888887776 7888888777 77788888877
Q ss_pred cCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 676 INMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
..|.+|+.+.|. +..+|..++.|++|+.|.
T Consensus 166 ~tl~~ld~s~ne-i~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhHHHhhhhhhh-hhhchHHhhhHHHHHHHH
Confidence 888888887775 556676677777666665
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=5.5e-09 Score=103.45 Aligned_cols=115 Identities=27% Similarity=0.305 Sum_probs=61.4
Q ss_pred hhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccCCccc
Q 002132 788 EALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEII 867 (961)
Q Consensus 788 ~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 867 (961)
++..-.|.++.|+++.|.+.. +.. +..+++|+.|+|++|.+...-.+-.+|.+.+.|.|.+|. ++.+.. +
T Consensus 301 ESvKL~Pkir~L~lS~N~i~~-v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG-------L 370 (490)
T KOG1259|consen 301 ESVKLAPKLRRLILSQNRIRT-VQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLSG-------L 370 (490)
T ss_pred hhhhhccceeEEeccccceee-ehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh-------h
Confidence 444445566666666666554 222 555666666666666543332233345556666666554 332211 1
Q ss_pred CcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCC
Q 002132 868 DAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALP 920 (961)
Q Consensus 868 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp 920 (961)
+.+-+|..|+++++ +++.+....+ ++++|+|+.|.+.+|| +..+|
T Consensus 371 ~KLYSLvnLDl~~N-~Ie~ldeV~~------IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 371 RKLYSLVNLDLSSN-QIEELDEVNH------IGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred Hhhhhheecccccc-chhhHHHhcc------cccccHHHHHhhcCCC-ccccc
Confidence 34445666666655 3444433222 4478888888888887 44444
No 42
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.2e-06 Score=89.21 Aligned_cols=179 Identities=20% Similarity=0.195 Sum_probs=121.8
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
+..+.+|+.+++++...|...-. .....-+.|+|..|+|||+.++.+++..+....=..+++|++-...++.+++..|
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 34599999999999988765543 2233348999999999999999999954322221227999999999999999999
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhC--CceEEEEEeCCCCCCccChhhhHHhhhCCCC-CcEEE--EEccchhhhhhhc
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESIT--GKRFLLVLDDVWDGDCIKWEPFYLCLKNGLH-GSKIL--VTTRKKSVASMMG 336 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~ii--vTtR~~~~~~~~~ 336 (961)
+++++..........+..+.+.+.+. ++.+++|||+++......-+.+...+..... .++|+ ..+-+..+...+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99997544444555566666766665 5799999999976532222444444443332 34443 3333333332222
Q ss_pred c-----CCcceEEcCCCCHHHHHHHHHHHHc
Q 002132 337 S-----TDTDIITVMELTEEECWSLFKRLAF 362 (961)
Q Consensus 337 ~-----~~~~~~~l~~L~~~~~~~lf~~~~~ 362 (961)
. .....+..+|-+.+|-..++..++-
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 1 1224588999999999999988874
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.71 E-value=3.4e-08 Score=92.17 Aligned_cols=118 Identities=22% Similarity=0.250 Sum_probs=82.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHh---cCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKR---KFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISES 285 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~ 285 (961)
+.+++.|+|.+|+|||++++.++++..... .-..++|+.+....+...+...|+++++.......+...+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 347899999999999999999998642110 13457899998888999999999999998876656677777888888
Q ss_pred hCCc-eEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccc
Q 002132 286 ITGK-RFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRK 328 (961)
Q Consensus 286 l~~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~ 328 (961)
+... ..+||+|+++.. +...++.+... .+ ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l-~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSL-LN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHH-TC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHH-Hh-CCCCeEEEEECh
Confidence 7755 459999999775 43334444332 23 566677777665
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=1.2e-08 Score=97.94 Aligned_cols=127 Identities=24% Similarity=0.297 Sum_probs=45.5
Q ss_pred ccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccch
Q 002132 567 CRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPE 646 (961)
Q Consensus 567 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~ 646 (961)
.+..++|.|.+.++.+.. +...-..+.+|++|+|++|. +..++ .+..+++|++|++++|.|+.++.
T Consensus 16 ~n~~~~~~L~L~~n~I~~-------Ie~L~~~l~~L~~L~Ls~N~------I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-------IENLGATLDKLEVLDLSNNQ------ITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--------S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccccccc-------ccchhhhhcCCCEEECCCCC------Ccccc-CccChhhhhhcccCCCCCCcccc
Confidence 344567888887776431 22212256788888888888 76664 47778888888888888888876
Q ss_pred hh-hccCCCcEEeecCcccccccc--hhhhcccCCceeecCCccccccccc----cCCCCCCCCcCCceE
Q 002132 647 TL-CELYNLEKLYITRCLYLEELP--EGIGKLINMKHLLNYRTDSLRYMPV----GIGRLTGLRTLDEFH 709 (961)
Q Consensus 647 ~i-~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~ 709 (961)
.+ ..+++|++|++++|. +..+- ..+..+++|++|++.+|+... .+. -+..+++|+.|+...
T Consensus 82 ~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEE
T ss_pred chHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEE
Confidence 55 468888888888887 44332 246678888888888886432 221 144555555555433
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=6.6e-10 Score=119.51 Aligned_cols=125 Identities=27% Similarity=0.367 Sum_probs=93.9
Q ss_pred CceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCc
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMK 679 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 679 (961)
..-...||+.|. +..+|..++.+..|..|.|..|.|..+|..+++|..|.+|||+.|. +..+|..++.|+ |+
T Consensus 75 tdt~~aDlsrNR------~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 75 TDTVFADLSRNR------FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LK 146 (722)
T ss_pred cchhhhhccccc------cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ce
Confidence 334557888887 8888888888889999999988888999999999999999999888 888888888887 88
Q ss_pred eeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCcccc
Q 002132 680 HLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGI 738 (961)
Q Consensus 680 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~ 738 (961)
.|.+++|. ++.+|..|+.+..|..|+ ...|.+... +..+.++.+|..|.+..+
T Consensus 147 vli~sNNk-l~~lp~~ig~~~tl~~ld----~s~nei~sl-psql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 147 VLIVSNNK-LTSLPEEIGLLPTLAHLD----VSKNEIQSL-PSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred eEEEecCc-cccCCcccccchhHHHhh----hhhhhhhhc-hHHhhhHHHHHHHHHhhh
Confidence 88888874 778888888777777777 444433222 334444555554444443
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.68 E-value=3.2e-07 Score=103.17 Aligned_cols=178 Identities=19% Similarity=0.216 Sum_probs=106.0
Q ss_pred CceecccchHHH---HHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 183 EEICGRVGERNE---LLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 183 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
.++||++..+.. +..++.. .....+.++|++|+||||||+.+++.. ... |+.++......+-++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~--~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGAT--DAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecccccHHHHH
Confidence 458888776555 6666653 244578889999999999999998842 222 233222111111122
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEE--Eccchhhh---h
Q 002132 260 AIAEALGIPSSNLGEFQSLLKLISES-ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILV--TTRKKSVA---S 333 (961)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~~~---~ 333 (961)
.+++ ..... ..+++.+|++|+++.......+.+...+.. +..++| ||.+.... .
T Consensus 79 ~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 2222 22111 246788999999988765555666665543 444444 34443211 1
Q ss_pred hhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHH
Q 002132 334 MMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGS 396 (961)
Q Consensus 334 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~ 396 (961)
.... ...+.+.+++.++.+.++.+.+..... ....-..+..+.|++.|+|.|..+..+..
T Consensus 139 L~SR--~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 139 LLSR--AQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred Hhcc--ceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1112 267999999999999999886532111 00012245678899999999976655443
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.66 E-value=4.9e-07 Score=93.39 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=102.3
Q ss_pred cchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCC
Q 002132 189 VGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIP 268 (961)
Q Consensus 189 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (961)
+..++.+..++.. .....+.|+|+.|+|||+||+.+++.. .......++++++.-.+. ...
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~~---~~~-------- 83 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQA---DPE-------- 83 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHHh---HHH--------
Confidence 4456666666542 234678999999999999999999853 333445666665432110 001
Q ss_pred CCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCcc-Ch-hhhHHhhhC-CCCCcEEEEEccchhh---------hhhhc
Q 002132 269 SSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCI-KW-EPFYLCLKN-GLHGSKILVTTRKKSV---------ASMMG 336 (961)
Q Consensus 269 ~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~iivTtR~~~~---------~~~~~ 336 (961)
+...+++ .-+||+||++..... .| ..+...+.. ...+.++|+||+.... ...+.
T Consensus 84 -------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 84 -------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 1111222 238999999875432 23 335444432 1234578998885431 11221
Q ss_pred cCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHh
Q 002132 337 STDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSL 397 (961)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~ 397 (961)
.. ..+++.++++++...++.+.+-..+- . --.+..+.|++.+.|.|..+..+...
T Consensus 150 ~~--~~i~l~~l~~~e~~~~l~~~~~~~~~-~---~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 150 WG--LVFQLPPLSDEEKIAALQSRAARRGL-Q---LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred cC--eeEecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 12 57999999999999999876532221 1 12345677888899999877766443
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1e-06 Score=97.03 Aligned_cols=193 Identities=17% Similarity=0.184 Sum_probs=112.7
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++...-..... ..++..-...+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 468999999999988886432 235678999999999999999988431100000 00000000011111
Q ss_pred HHcC-----CCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hh
Q 002132 263 EALG-----IPSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VA 332 (961)
Q Consensus 263 ~~l~-----~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~ 332 (961)
.... .........++..+.+... ..+++-++|+|+++..+...++.+...+.......++|++|.+.. +.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 1000 0000001122222111111 124566999999988766667888888877666777777765433 32
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHH
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAK 392 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 392 (961)
..+.. ....+++.+++.++..+++.+.+...+.. -.++.+..|++.++|.|..+.
T Consensus 164 ~tI~S-Rc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 164 KTILS-RCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHHHh-hceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 22211 12689999999999999888866433211 123567789999999886443
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=7e-07 Score=96.65 Aligned_cols=179 Identities=15% Similarity=0.159 Sum_probs=119.2
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcch----hhHhcCCeEEEEEe-CCcccHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHV----EVKRKFDKLLWVCV-SDPFEQFRV 257 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-s~~~~~~~~ 257 (961)
.+++|-+..++.+..++.... -.....++|+.|+||||+|+.+++.. ....|+|...|... +....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357898888888988886432 34577899999999999999988742 12346666556442 22222222
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhh-h-hh
Q 002132 258 AKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVA-S-MM 335 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~-~-~~ 335 (961)
.+++.+.+... -..+++-++|+|+++..+...++.+...+.....++.+|++|.+.+.. . ..
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22333332211 123556688888887777778999999999888889999888765422 1 11
Q ss_pred ccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 336 GSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 336 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
.. ...+++.++++++....+.+...+ . . .+.++.++..++|.|..+..
T Consensus 142 SR--c~~~~~~~~~~~~~~~~l~~~~~~-~---~----~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SR--CQIYKLNRLSKEEIEKFISYKYND-I---K----EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hh--ceeeeCCCcCHHHHHHHHHHHhcC-C---C----HHHHHHHHHHcCCCHHHHHH
Confidence 22 278999999999998888665311 1 1 23367888999999875543
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=2.8e-09 Score=108.44 Aligned_cols=263 Identities=21% Similarity=0.171 Sum_probs=141.1
Q ss_pred HHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCc----ccccchh-------hhccCCCcEEeecC
Q 002132 593 EELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQN----IRKLPET-------LCELYNLEKLYITR 661 (961)
Q Consensus 593 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~----i~~Lp~~-------i~~L~~L~~L~L~~ 661 (961)
......+..+..|+|++|...+. -...+...+.+.++|+.-++++-. ..++|+. +-..++|++||||.
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~E-Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTE-AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccCCchhHH-HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 33467788999999999972110 011244556677788888887532 2245544 33556788888887
Q ss_pred cccccccchh----hhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccc
Q 002132 662 CLYLEELPEG----IGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCG 737 (961)
Q Consensus 662 ~~~l~~lp~~----i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~ 737 (961)
|-+-..-++. +.++..|+||.+.+|... |.+=+.+ +. -|.+|.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg---~~ag~~l---------------------~~------al~~l~--- 148 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLG---PEAGGRL---------------------GR------ALFELA--- 148 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCC---hhHHHHH---------------------HH------HHHHHH---
Confidence 7643333322 345666777777666421 1100000 00 011110
Q ss_pred cccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCC----CCCc
Q 002132 738 IRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTV----FPNW 813 (961)
Q Consensus 738 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----lp~~ 813 (961)
......+...|+.+....|...+. ....+-..++.++.|+.+.+..|.+... +-..
T Consensus 149 -------------~~kk~~~~~~Lrv~i~~rNrlen~-------ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea 208 (382)
T KOG1909|consen 149 -------------VNKKAASKPKLRVFICGRNRLENG-------GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA 208 (382)
T ss_pred -------------HHhccCCCcceEEEEeeccccccc-------cHHHHHHHHHhccccceEEEecccccCchhHHHHHH
Confidence 011223445666666666554432 1344556666777888888877765431 0111
Q ss_pred cccccCccEEEEeCCCCCC----cCCC-CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccc
Q 002132 814 LMSLTNLRSLVLYGCENCE----QLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWD 888 (961)
Q Consensus 814 ~~~l~~L~~L~L~~~~~~~----~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~ 888 (961)
+..+++|+.|+|.+|.+.. .+.. +..+|+|+.|++.+|. ++.-+...+.......+|+|++|.+.++. +.
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe----It 283 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE----IT 283 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch----hH
Confidence 2367788888887776543 1222 5566778888887776 44433322222222457788888877762 11
Q ss_pred cccccccccccccccccceecccccc
Q 002132 889 YGITRTGNTVINIMPRLSSLTIARCP 914 (961)
Q Consensus 889 ~~~~~~~~~~~~~~p~L~~L~l~~c~ 914 (961)
..............|.|.+|+|.+|.
T Consensus 284 ~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 284 RDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHHHHHhcchhhHHhcCCccc
Confidence 11111111112346778888887775
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.61 E-value=4.7e-07 Score=88.54 Aligned_cols=184 Identities=20% Similarity=0.211 Sum_probs=100.2
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
-.+|||.+.-++.+.-++..... ..+.+.-+.+||++|+||||||+-+++.. ...| .+.+.+.-...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~--~~~~---~~~sg~~i~k~------- 89 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANEL--GVNF---KITSGPAIEKA------- 89 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHC--T--E---EEEECCC--SC-------
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhcc--CCCe---EeccchhhhhH-------
Confidence 45799998888876555542211 02357788999999999999999999953 3333 22222110011
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC--------CC-----------cEE
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL--------HG-----------SKI 322 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~--------~g-----------s~i 322 (961)
.++...+.. + +++-+|.+|+++..+...-+.+..++.++. .+ +-|
T Consensus 90 --------------~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 90 --------------GDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp --------------HHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred --------------HHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 112222221 2 235577788888765544455555554431 11 223
Q ss_pred EEEccchhhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhh
Q 002132 323 LVTTRKKSVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLM 398 (961)
Q Consensus 323 ivTtR~~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 398 (961)
=-|||...+.......-..+.+++..+.+|-.++..+.+..- .-+-..+.+.+|+++|.|-|--+.-+-+..
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 457887666555444312345899999999999998876321 122335778999999999997665554443
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=3.6e-08 Score=111.30 Aligned_cols=103 Identities=32% Similarity=0.389 Sum_probs=89.6
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccC-ccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhc
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLV-HLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGK 674 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 674 (961)
...++.+..|++.++. +.++|..++.+. +|++|++++|.+..+|..++.+++|+.|++++|. +..+|...+.
T Consensus 112 ~~~~~~l~~L~l~~n~------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLDNNN------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSN 184 (394)
T ss_pred hhcccceeEEecCCcc------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhh
Confidence 3455789999999998 899999888885 9999999999999999889999999999999998 8889987779
Q ss_pred ccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 675 LINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 675 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
+++|+.|++++|. +..+|..++.+..|++|.
T Consensus 185 ~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 185 LSNLNNLDLSGNK-ISDLPPEIELLSALEELD 215 (394)
T ss_pred hhhhhheeccCCc-cccCchhhhhhhhhhhhh
Confidence 9999999999995 677887666666677776
No 53
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=4.1e-06 Score=96.22 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=116.9
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhc-------------------CCeE
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRK-------------------FDKL 243 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 243 (961)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+.+...-+.. |..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 468999999999999886432 2456679999999999999988874311111 1112
Q ss_pred EEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCC
Q 002132 244 LWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHG 319 (961)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 319 (961)
++++.+.. ..++++.+.+... ..++.-++|||+++..+...|+.++..+......
T Consensus 91 iEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 22222211 1222222222221 2345568999999988777788898888776667
Q ss_pred cEEEEEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch-hHHHHH
Q 002132 320 SKILVTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL-AAKTIG 395 (961)
Q Consensus 320 s~iivTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~~ 395 (961)
.++|+||++.. +...+. .....+.+++++.++..+.+.+.+..++- .-..+....|++.++|... |+..+-
T Consensus 150 v~FILaTtd~~KIp~TIr-SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 150 VKFILATTDPQKIPVTVL-SRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred eEEEEEECChhhccchhh-hheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88888777654 221111 11267999999999999999887643221 1124567889999998664 554433
No 54
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.58 E-value=1.3e-07 Score=94.26 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=43.0
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-----ccHHHHH
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-----FEQFRVA 258 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~ 258 (961)
.||||+++++++...+.... ....+++.|+|.+|+|||+|+++++........+ ++.+.+... .....++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 75 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSAL 75 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHH
Confidence 48999999999999996222 3456899999999999999999999865333222 333333332 1235556
Q ss_pred HHHHHHc
Q 002132 259 KAIAEAL 265 (961)
Q Consensus 259 ~~i~~~l 265 (961)
++++.++
T Consensus 76 ~~l~~~~ 82 (185)
T PF13191_consen 76 RQLIDQL 82 (185)
T ss_dssp HHHS---
T ss_pred HHHHHHh
Confidence 6665554
No 55
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.58 E-value=9e-06 Score=95.33 Aligned_cols=173 Identities=21% Similarity=0.193 Sum_probs=107.4
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC---CeEEEEEeCC---cccHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF---DKLLWVCVSD---PFEQFR 256 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~---~~~~~~ 256 (961)
++++|++..+..+...+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 46899999999888877532 34568999999999999999998854322222 1234554432 112222
Q ss_pred HHHH---------------HHHHcCCCCC----------------CCCC-HHHHHHHHHHHhCCceEEEEEeCCCCCCcc
Q 002132 257 VAKA---------------IAEALGIPSS----------------NLGE-FQSLLKLISESITGKRFLLVLDDVWDGDCI 304 (961)
Q Consensus 257 ~~~~---------------i~~~l~~~~~----------------~~~~-~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~ 304 (961)
+... .+...+.... +... ....+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 2111 1122121100 0011 123567788888899999998888877767
Q ss_pred ChhhhHHhhhCCCCCcEEEE--Eccchhh-hhhhccCCcceEEcCCCCHHHHHHHHHHHHc
Q 002132 305 KWEPFYLCLKNGLHGSKILV--TTRKKSV-ASMMGSTDTDIITVMELTEEECWSLFKRLAF 362 (961)
Q Consensus 305 ~~~~l~~~l~~~~~gs~iiv--TtR~~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 362 (961)
.|+.+...+....+...|++ ||++... ...+.. ....+.+.+++.+|.++++.+.+-
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS-R~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS-RCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHh-ceeEEEeCCCCHHHHHHHHHHHHH
Confidence 78888777766655555555 5664431 111111 124678999999999999998764
No 56
>PRK04195 replication factor C large subunit; Provisional
Probab=98.57 E-value=5.2e-06 Score=95.38 Aligned_cols=249 Identities=14% Similarity=0.118 Sum_probs=140.8
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
-.+++|.++.++++..|+..... ....+.+.|+|++|+||||+|+.+++.. .|+ ++-++.+...+.. .+..+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEcccccccHH-HHHHH
Confidence 45699999999999999875432 1226789999999999999999999953 232 3444555433222 22333
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCc----cChhhhHHhhhCCCCCcEEEEEccchh-hhh-hh
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDC----IKWEPFYLCLKNGLHGSKILVTTRKKS-VAS-MM 335 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtR~~~-~~~-~~ 335 (961)
+....... .....++-+||+|+++.... ..+..+...+... +..||+|+.+.. ... ..
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhH
Confidence 32221110 01113678999999976532 2355566555532 344666664332 111 11
Q ss_pred ccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCC---CHHHHHHHhc
Q 002132 336 GSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQ---IEEEWERISN 412 (961)
Q Consensus 336 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~---~~~~w~~~~~ 412 (961)
.. ....+.+.+++.++....+.+.+...+... ..++...|++.++|..-.+......+.... +.+.-..+..
T Consensus 149 rs-r~~~I~f~~~~~~~i~~~L~~i~~~egi~i----~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~ 223 (482)
T PRK04195 149 RN-ACLMIEFKRLSTRSIVPVLKRICRKEGIEC----DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR 223 (482)
T ss_pred hc-cceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc
Confidence 11 126799999999999998887764433211 135678899999997766654444333321 2333333321
Q ss_pred CcccchhhhhhhHHHHHHHhhc-CCChhhHHHHhhhccCCCCCccChHHHHHHHHHcCCccc
Q 002132 413 SDLWRVEEMEKGVLSSLLLSYN-DLPSKVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSA 473 (961)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~ 473 (961)
. +....++.++..-+. .-+......+.. ..++. ..+-.|+.+.+...
T Consensus 224 ~------d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 R------DREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred C------CCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1 112345666665443 222223222221 12233 45678999998764
No 57
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.57 E-value=3.3e-08 Score=94.85 Aligned_cols=130 Identities=26% Similarity=0.349 Sum_probs=45.9
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCcccc-ccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhh-
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIE-KLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIG- 673 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~-~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~- 673 (961)
+.++..+|.|+|.+|. +..+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|. +..++..+.
T Consensus 15 ~~n~~~~~~L~L~~n~------I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ------ISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHH
T ss_pred cccccccccccccccc------ccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHH
Confidence 4456678999999998 76664 465 6889999999999999986 48889999999999998 777866664
Q ss_pred cccCCceeecCCcccccccc--ccCCCCCCCCcCCceEeCCCCCcCCCc---ccccccccCCCcCCccccc
Q 002132 674 KLINMKHLLNYRTDSLRYMP--VGIGRLTGLRTLDEFHVIGGGGVDGRK---ACWFESLKNLKHLQVCGIR 739 (961)
Q Consensus 674 ~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~---~~~l~~L~~L~~L~~~~~~ 739 (961)
.+++|++|++++|. +..+. ..++.+++|+.|+ ..+|++.... ...+..+++|+.|+...+.
T Consensus 86 ~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~----L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 86 NLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLS----LEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-----TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hCCcCCEEECcCCc-CCChHHhHHHHcCCCcceee----ccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 69999999999985 33221 2244455555555 3344332211 1234556666666654443
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.56 E-value=1.4e-06 Score=96.10 Aligned_cols=198 Identities=16% Similarity=0.083 Sum_probs=112.9
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCC-eEEEEEeCCcccHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFD-KLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i 261 (961)
.+++|++..++.+..++... ..+.+.++|+.|+||||+|+.+++... ...+. ..+.++++...+. ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhhh
Confidence 56899999999998888632 345678999999999999999988531 12222 2344444331100 00000
Q ss_pred H------HHcCCC-CCCCCCHHHHHHHHHHH---h--CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccch
Q 002132 262 A------EALGIP-SSNLGEFQSLLKLISES---I--TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKK 329 (961)
Q Consensus 262 ~------~~l~~~-~~~~~~~~~l~~~l~~~---l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 329 (961)
. ..++.. .......+.....+... . .+.+-+||+||+..........+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000 00001112222222221 1 2345589999997665444555666665555567788877543
Q ss_pred h-hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 330 S-VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 330 ~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
. +...... ....+.+.+++.++...++.+.+...+.. -..+..+.+++.++|.+-.+...
T Consensus 166 ~~~~~~L~s-r~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 166 SKLIPPIRS-RCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred hhCchhhcC-CceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2222211 12578999999999999998876433221 12456788889999877655443
No 59
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3e-07 Score=104.34 Aligned_cols=196 Identities=20% Similarity=0.133 Sum_probs=115.7
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|-+...+.|..++.... -...+.++|++|+||||+|+.+++...-...+...+|.|.+... +.......+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 468998888888888887432 23567999999999999999998854222222223333321100 000000000
Q ss_pred HHcCCCCCCCCCHHH---HHHHHHH-HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccc-hhhhhhhcc
Q 002132 263 EALGIPSSNLGEFQS---LLKLISE-SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRK-KSVASMMGS 337 (961)
Q Consensus 263 ~~l~~~~~~~~~~~~---l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~~~~~~~~ 337 (961)
..+.. ......+. +...+.. -..+++-++|+|+++......+..+...+........+|++|.. ..+...+..
T Consensus 88 ~el~~--~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 88 LEIDA--ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred EEecc--cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00000 01111222 2222211 12356679999999877666788888888776556566665543 333222222
Q ss_pred CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhH
Q 002132 338 TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAA 391 (961)
Q Consensus 338 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 391 (961)
....+++.+++.++..+++.+.+...+.. -..+....|++.++|.+--+
T Consensus 166 -Rc~~~~f~~ls~~el~~~L~~i~~~egi~----i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 166 -RTQHFRFRRLTEEEIAGKLRRLLEAEGRE----AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred -ceEEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 12689999999999999998877433321 12456788999999988644
No 60
>PTZ00202 tuzin; Provisional
Probab=98.55 E-value=3.3e-06 Score=90.06 Aligned_cols=170 Identities=14% Similarity=0.148 Sum_probs=107.1
Q ss_pred ccCCCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHH
Q 002132 178 SLIDEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRV 257 (961)
Q Consensus 178 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 257 (961)
.+.+.+.|+||+.++..+...|...+. ...+++.|.|++|+|||||++.+..... ..+++.-.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHH
Confidence 445677899999999999999975443 2456999999999999999999987431 223333233 67999
Q ss_pred HHHHHHHcCCCCCCCC-C-HHHHHHHHHHHh-C-CceEEEEEeCCCCCCccChhhhH---HhhhCCCCCcEEEEEccchh
Q 002132 258 AKAIAEALGIPSSNLG-E-FQSLLKLISESI-T-GKRFLLVLDDVWDGDCIKWEPFY---LCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~-~-~~~l~~~l~~~l-~-~kr~LlVlDdv~~~~~~~~~~l~---~~l~~~~~gs~iivTtR~~~ 330 (961)
++.++.+|+.+..... + .+.+.+.+.+.- . +++.+||+-==.-. +...+. ..|.....-+.|++---.+.
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~---~l~rvyne~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGS---SLQRVYNEVVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCC---cHHHHHHHHHHHHccchhheeeeeehHhh
Confidence 9999999997433221 1 233444443322 3 67777776532111 222221 12334445667776554443
Q ss_pred hhhhhccC-CcceEEcCCCCHHHHHHHHHHHH
Q 002132 331 VASMMGST-DTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 331 ~~~~~~~~-~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
+....... ....|.+++++.++|.++-.+..
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 32221111 12578999999999999887754
No 61
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.6e-06 Score=98.47 Aligned_cols=193 Identities=18% Similarity=0.177 Sum_probs=115.8
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.++||.+...+.|..++.... -...+.++|+.|+||||+|+.+++...-. -|+... .+..=...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~------~~~~~~-pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCE------TGVTST-PCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCC------cCCCCC-CCccCHHHHHHh
Confidence 468999999999999987432 24678999999999999999988743110 011000 000000111111
Q ss_pred HHc-----CCCCCCCCCHHHHHHHHHH----HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hh
Q 002132 263 EAL-----GIPSSNLGEFQSLLKLISE----SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VA 332 (961)
Q Consensus 263 ~~l-----~~~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~ 332 (961)
..- .....+...++++.+.+.. -..++.-++|+|+++..+...+..+...+.....+.++|++|.+.. +.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 000 0000011123332222221 1235667999999998776677888888877666777887776543 22
Q ss_pred -hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 333 -SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 333 -~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
..... ...+++.+++.++..+.+.+.+...+.. -..+....|++.++|.+..+..
T Consensus 163 ~TIlSR--Cq~feFkpLs~eEI~k~L~~Il~kEgI~----id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 163 ITVISR--CLQFTLRPLAVDEITKHLGAILEKEQIA----ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HHHHHh--hheeeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 11222 2789999999999999998876433221 1244577899999998855443
No 62
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.7e-06 Score=101.36 Aligned_cols=183 Identities=17% Similarity=0.176 Sum_probs=115.8
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhc-------------------CCeE
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRK-------------------FDKL 243 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 243 (961)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999999999988886422 2345689999999999999999885311101 1011
Q ss_pred EEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH-HHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEE
Q 002132 244 LWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLIS-ESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKI 322 (961)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 322 (961)
+++.......+ .++.++...+. ....+++-++|||+++......++.|+..+.......++
T Consensus 91 iEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 22211111111 11222222222 122467789999999988777888888888776666777
Q ss_pred EEEccch-hhhhh-hccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 323 LVTTRKK-SVASM-MGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 323 ivTtR~~-~~~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
|++|.+. .+... ... ...|++.+++.++..+++.+.+-..+. ....+.+..|++.++|.|.-+..+
T Consensus 153 ILaTTe~~kLl~TIlSR--Cq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSR--CLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHh--heEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7666544 33322 222 278999999999999999886633211 122456788999999988654444
No 63
>PF13173 AAA_14: AAA domain
Probab=98.53 E-value=5.3e-07 Score=83.30 Aligned_cols=121 Identities=23% Similarity=0.267 Sum_probs=82.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
+++.|.|+-|+|||||+++++.+.. ....+++++..+......... + +.+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------D-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------h-hHHHHHHhhccCC
Confidence 6899999999999999999998542 345678887776443211100 0 2233333344477
Q ss_pred EEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhhhh----ccCCcceEEcCCCCHHHH
Q 002132 291 FLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMM----GSTDTDIITVMELTEEEC 353 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~----~~~~~~~~~l~~L~~~~~ 353 (961)
.+|+||++... .+|......+.+.....+|++|+........- -......+++.||+-.|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999876 47888777777766678999999987655321 111225689999998774
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.49 E-value=9.7e-08 Score=107.86 Aligned_cols=123 Identities=26% Similarity=0.318 Sum_probs=92.1
Q ss_pred eEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccC-CCcEEeecCcccccccchhhhcccCCcee
Q 002132 603 RALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELY-NLEKLYITRCLYLEELPEGIGKLINMKHL 681 (961)
Q Consensus 603 r~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 681 (961)
..|++..+. +...+..+..+..+..|++.++.++.+|..+..+. +|+.|++++|. +..+|..++.+++|+.|
T Consensus 96 ~~l~~~~~~------~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L 168 (394)
T COG4886 96 PSLDLNLNR------LRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNL 168 (394)
T ss_pred ceeeccccc------cccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhcccccccc
Confidence 457777776 43444556677899999999999999999998885 99999999998 88898889999999999
Q ss_pred ecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCcccc
Q 002132 682 LNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGI 738 (961)
Q Consensus 682 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~ 738 (961)
+++.|. +..+|...+.+++|+.|. .+.+.+... +..+..+..|+.|.+.++
T Consensus 169 ~l~~N~-l~~l~~~~~~~~~L~~L~----ls~N~i~~l-~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 169 DLSFND-LSDLPKLLSNLSNLNNLD----LSGNKISDL-PPEIELLSALEELDLSNN 219 (394)
T ss_pred ccCCch-hhhhhhhhhhhhhhhhee----ccCCccccC-chhhhhhhhhhhhhhcCC
Confidence 999996 677777666788888887 555543322 222223334555555444
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.46 E-value=2.1e-08 Score=102.15 Aligned_cols=250 Identities=20% Similarity=0.184 Sum_probs=136.5
Q ss_pred cccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcc-------ccccCccceEEe
Q 002132 564 VPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRN-------IEKLVHLRYLNL 636 (961)
Q Consensus 564 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~-------i~~L~~Lr~L~L 636 (961)
.....+..+..+.+++|.+... .-......+.+-+.||.-++++-. ++.....+|+. +-.+++|++|+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~E--Aa~~i~~~L~~~~~L~~v~~sd~f--tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTE--AARAIAKVLASKKELREVNLSDMF--TGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred HHhcccCceEEEeccCCchhHH--HHHHHHHHHhhcccceeeehHhhh--cCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 3445677788888888763210 112344457778899999988764 22224455543 456679999999
Q ss_pred cCCccc-----ccchhhhccCCCcEEeecCcccccccchh--------------hhcccCCceeecCCccccccccccCC
Q 002132 637 SCQNIR-----KLPETLCELYNLEKLYITRCLYLEELPEG--------------IGKLINMKHLLNYRTDSLRYMPVGIG 697 (961)
Q Consensus 637 ~~~~i~-----~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~--------------i~~L~~L~~L~l~~~~~~~~~p~~i~ 697 (961)
|.|-+. .+-.-|.+++.|++|.|.+|. +...-.. +..-++||.+...+|. +..-+..
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~-- 175 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGAT-- 175 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHH--
Confidence 998765 333446789999999999998 4322111 1223345555555442 1111100
Q ss_pred CCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCcc
Q 002132 698 RLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGER 777 (961)
Q Consensus 698 ~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 777 (961)
.....+...+.|+.+++..+..... -..+....+.-+++|+.|+|..|....
T Consensus 176 ---------------------~~A~~~~~~~~leevr~~qN~I~~e---G~~al~eal~~~~~LevLdl~DNtft~---- 227 (382)
T KOG1909|consen 176 ---------------------ALAEAFQSHPTLEEVRLSQNGIRPE---GVTALAEALEHCPHLEVLDLRDNTFTL---- 227 (382)
T ss_pred ---------------------HHHHHHHhccccceEEEecccccCc---hhHHHHHHHHhCCcceeeecccchhhh----
Confidence 0111233344555555544332111 112334445566666666666554431
Q ss_pred CCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccc-----cccCccEEEEeCCCCCCc----C-CCCCCccccceee
Q 002132 778 RKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLM-----SLTNLRSLVLYGCENCEQ----L-PPLGKLQSLEKLS 847 (961)
Q Consensus 778 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~-----~l~~L~~L~L~~~~~~~~----l-~~l~~l~~L~~L~ 847 (961)
.-...+...++.+++|+.|++..|.+...-...+. ..|+|+.|.|.+|.+... + ...+..|.|+.|+
T Consensus 228 ---egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 228 ---EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred ---HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence 11223344556666677777776665442111111 456777777777755321 1 1245577888888
Q ss_pred ccccc
Q 002132 848 LTIMR 852 (961)
Q Consensus 848 L~~~~ 852 (961)
|++|.
T Consensus 305 LngN~ 309 (382)
T KOG1909|consen 305 LNGNR 309 (382)
T ss_pred CCccc
Confidence 88776
No 66
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.45 E-value=1.4e-06 Score=83.25 Aligned_cols=125 Identities=20% Similarity=0.159 Sum_probs=74.6
Q ss_pred ecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHc
Q 002132 186 CGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEAL 265 (961)
Q Consensus 186 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 265 (961)
+|++..+..+...+... ..+.+.|+|.+|+|||++++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 37788888888888643 346788999999999999999999542 222456677665543322211111100
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCC------CCCcEEEEEccchh
Q 002132 266 GIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNG------LHGSKILVTTRKKS 330 (961)
Q Consensus 266 ~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtR~~~ 330 (961)
............+..++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999864222333344444432 35778888887653
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=98.44 E-value=3.3e-06 Score=91.66 Aligned_cols=183 Identities=13% Similarity=0.074 Sum_probs=108.3
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCC-eEEEEEeCCcccHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFD-KLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i 261 (961)
.+++|.++.++.|..++.. +..+.+.++|++|+||||+|+.+++.. ....|. .++-++.++..... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 4688988888888877653 234557799999999999999998853 122222 12222223222211 22222
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hhhhhccCCc
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VASMMGSTDT 340 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~~~~~~~~~ 340 (961)
+..+..... ..-.++.-++|+|+++.........+...+......+++|+++.... +....... .
T Consensus 85 i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR-c 150 (319)
T PLN03025 85 IKMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR-C 150 (319)
T ss_pred HHHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh-h
Confidence 221110000 00024567999999988765555666666655455677777765432 21111111 2
Q ss_pred ceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhH
Q 002132 341 DIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAA 391 (961)
Q Consensus 341 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 391 (961)
..+++.++++++....+...+-..+-.-. .+....|++.++|..-.+
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 57999999999999999887743322111 345788899999876443
No 68
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.44 E-value=3.1e-06 Score=86.63 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=100.1
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Q 002132 207 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESI 286 (961)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 286 (961)
+++++-+.+||++|+||||||+.+.+..+... ..||..|....-..-.+.|+++-. =...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH---------------HHHhh
Confidence 44778889999999999999999998542222 557777665444444455544421 11235
Q ss_pred CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEE--Eccchhhh---hhhccCCcceEEcCCCCHHHHHHHHHHHH
Q 002132 287 TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILV--TTRKKSVA---SMMGSTDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~~~---~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
.++|.+|++|.|..-+..+-+. ++|.-.+|.-++| ||-++... ..+... .++.|++|+.++-..++.+..
T Consensus 220 ~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC--~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRC--RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhcc--ceeEeccCCHHHHHHHHHHHH
Confidence 5889999999997654333222 4555556776665 77776532 222233 789999999999999998843
Q ss_pred c---CCCC---CCCh---hhHHHHHHHHHhhcCCCch
Q 002132 362 F---FGPS---INDC---EKLEQIGRRIAGKFKGLPL 389 (961)
Q Consensus 362 ~---~~~~---~~~~---~~~~~~~~~i~~~c~G~PL 389 (961)
. .+.. .-+. .....+.+-++..|.|-..
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 2 1111 1111 1234456667777887553
No 69
>PRK08727 hypothetical protein; Validated
Probab=98.43 E-value=7.4e-06 Score=84.23 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=90.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
..+.|+|..|+|||+|++.+++.. ......+.|+++.+ ....+. +.+ +.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hcC
Confidence 459999999999999999999853 33444567776432 111111 111 111 223
Q ss_pred EEEEEeCCCCCC-ccChhh-hHHhhhC-CCCCcEEEEEccchh---------hhhhhccCCcceEEcCCCCHHHHHHHHH
Q 002132 291 FLLVLDDVWDGD-CIKWEP-FYLCLKN-GLHGSKILVTTRKKS---------VASMMGSTDTDIITVMELTEEECWSLFK 358 (961)
Q Consensus 291 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~~~l~~L~~~~~~~lf~ 358 (961)
-+||+||+.... ...|.. +...+.. ...|..||+|++... +...+... ..+++++++.++-.+++.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~--~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC--IRIGLPVLDDVARAAVLR 172 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC--ceEEecCCCHHHHHHHHH
Confidence 589999997542 123443 2222222 124567999998532 22222223 689999999999999999
Q ss_pred HHHcCCCCCCChhhHHHHHHHHHhhcCCCchhH
Q 002132 359 RLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAA 391 (961)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 391 (961)
+++...+- .-.++...-|++.++|-.-.+
T Consensus 173 ~~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 173 ERAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 87754321 122456778888888766554
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.7e-06 Score=95.24 Aligned_cols=200 Identities=15% Similarity=0.140 Sum_probs=115.6
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.++||-+..++.|..++.... -...+.++|..|+||||+|+.+.+...-... +..--+. +..+..-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~~-~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGIT-AQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccCC-CCCCcccHHHHHHH
Confidence 468999999999999887432 3356789999999999999998874311000 0000000 00000001111111
Q ss_pred H-----HcCCCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEcc-chhhh
Q 002132 263 E-----ALGIPSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTR-KKSVA 332 (961)
Q Consensus 263 ~-----~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~~~ 332 (961)
. -+.........++++.+.+... ..++.-++|+|+++..+...++.++..+.......++|++|. ...+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 0 0000111112233333333221 246667999999998877788888888876555666665554 44443
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
..+.+ ....+.+.+++.++..+.+.+.+...+. . ...+..+.|++.++|.|.....+
T Consensus 169 pTIrS-RCq~f~f~~ls~eei~~~L~~Il~~Egi-~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLS-RCLQFNLKQMPPGHIVSHLDAILGEEGI-A---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHH-HHHhcccCCCChHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22221 1268999999999999998876532221 1 11345678999999999755443
No 71
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=3.7e-08 Score=97.73 Aligned_cols=130 Identities=26% Similarity=0.279 Sum_probs=86.6
Q ss_pred cCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 598 ESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 598 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
..+.|..|||++|. +..+-+++.-++.+|.|++|.|.|..+-. +..|++|+.|||++|. +..+-..-.+|.|
T Consensus 282 TWq~LtelDLS~N~------I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSGNL------ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGN 353 (490)
T ss_pred hHhhhhhccccccc------hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcC
Confidence 45567778888887 77777777777788888888887776654 7777888888888776 5555554556777
Q ss_pred CceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCc-ccccccccCCCcCCccccccC
Q 002132 678 MKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRK-ACWFESLKNLKHLQVCGIRRL 741 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~-~~~l~~L~~L~~L~~~~~~~~ 741 (961)
.+.|.+++|. +.. -+++++|-+|..|+ ...|.+.... ...++.|+.|+++.+.+|...
T Consensus 354 IKtL~La~N~-iE~-LSGL~KLYSLvnLD----l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQNK-IET-LSGLRKLYSLVNLD----LSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred Eeeeehhhhh-Hhh-hhhhHhhhhheecc----ccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 7778777773 222 24566667777776 5555443221 235666777777777666553
No 72
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.42 E-value=5.2e-06 Score=90.84 Aligned_cols=183 Identities=14% Similarity=0.056 Sum_probs=109.0
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEe--CCcccHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCV--SDPFEQFRVAKA 260 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~ 260 (961)
.+++|++..++.+..++... ..+.+.++|..|+||||+|+.+++... ...+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 46899999999999988632 344579999999999999999988531 11221 122222 2221111 1111
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hhhhhccCC
Q 002132 261 IAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VASMMGSTD 339 (961)
Q Consensus 261 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~~~~~~~~ 339 (961)
.+.++....+ .....+-++++|+++.........+...+......+++|+++.... +.......
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr- 152 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR- 152 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH-
Confidence 1111110000 0012356899999976654455667776666555677777764322 11111111
Q ss_pred cceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 340 TDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 340 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
...+++.+++.++...++.+.+...+- . -..+....+++.++|.+.-+..
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~-~---i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGI-E---ITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 257899999999999998887643322 1 1244677889999998865433
No 73
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6.4e-06 Score=93.76 Aligned_cols=185 Identities=19% Similarity=0.167 Sum_probs=114.2
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhH-------------------hcCCeE
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK-------------------RKFDKL 243 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 243 (961)
.+++|-+..++.+...+.... -...+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999998886432 33567899999999999999998743100 011122
Q ss_pred EEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEE
Q 002132 244 LWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISE-SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKI 322 (961)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 322 (961)
+++.......++ +...+.+.+.. -..+++-++|+|+++..+...++.+...+......+.+
T Consensus 91 ieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 222221111111 12222222221 12456779999999887777788888888876666666
Q ss_pred EEEc-cchhhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch-hHHHHH
Q 002132 323 LVTT-RKKSVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL-AAKTIG 395 (961)
Q Consensus 323 ivTt-R~~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~~ 395 (961)
|++| ....+...+.. ....+++.+++.++....+.+.+...+- ...++....|++.++|.+- |+..+-
T Consensus 153 IL~Ttd~~kil~tI~S-Rc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 153 ILATTDYHKIPVTILS-RCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEECChhhhhhhHHH-heeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6544 43333322211 1278999999999998888876533221 1124456789999999774 444443
No 74
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=4.3e-06 Score=90.67 Aligned_cols=198 Identities=16% Similarity=0.134 Sum_probs=119.0
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh--cCCeEEEEEeCCcccHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR--KFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~s~~~~~~~~~~ 259 (961)
-..++|-++..+.+...+.... ....+.|+|+.|+||||+|+.+++..--.. .+... .....+..-...+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 4568999999999999887432 345688999999999999999888531100 01111 0011111111233
Q ss_pred HHHHH-------cCCC--C-----CCCCCHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCc
Q 002132 260 AIAEA-------LGIP--S-----SNLGEFQSLLKLISESI-----TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGS 320 (961)
Q Consensus 260 ~i~~~-------l~~~--~-----~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 320 (961)
.+... +..+ . .....++++. .+.+.+ .+++-++|+|+++..+....+.+...+.......
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33222 1100 0 0112234433 333333 3567799999999888777788888887755555
Q ss_pred EEEEEccch-hhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHH
Q 002132 321 KILVTTRKK-SVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIG 395 (961)
Q Consensus 321 ~iivTtR~~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 395 (961)
.+|++|... .+...... ....+++.+++.++..+++.+..... . ...+.+..|++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~---~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQ---G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhccc---C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555555433 33222221 23689999999999999998843211 1 113446789999999998665443
No 75
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.39 E-value=6.7e-06 Score=81.90 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=66.6
Q ss_pred CceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccch-hhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCC
Q 002132 288 GKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKK-SVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPS 366 (961)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 366 (961)
+.+-++|+||++......++.+...+......+.+|++|++. .+...+.. ....+++.+++.++..+++.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s-r~~~~~~~~~~~~~~~~~l~~~--g--- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS-RCQVLPFPPLSEEALLQWLIRQ--G--- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh-hcEEeeCCCCCHHHHHHHHHHc--C---
Confidence 556789999998876667788888887766667777777654 22222221 1268999999999999998876 1
Q ss_pred CCChhhHHHHHHHHHhhcCCCchh
Q 002132 367 INDCEKLEQIGRRIAGKFKGLPLA 390 (961)
Q Consensus 367 ~~~~~~~~~~~~~i~~~c~G~PLa 390 (961)
.. .+.+..|++.++|.|..
T Consensus 169 i~-----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS-----EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC-----HHHHHHHHHHcCCCccc
Confidence 11 35688999999998863
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=9.9e-06 Score=91.67 Aligned_cols=195 Identities=16% Similarity=0.131 Sum_probs=114.6
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCe-EEEEEeCCcccHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDK-LLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i 261 (961)
.+++|-+..+..+...+.... -...+.++|+.|+||||+|+.+++...-...... ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 368898888888877765322 2357889999999999999999885311110000 000000000 001111
Q ss_pred HHHcC-----CCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEE-Eccchhh
Q 002132 262 AEALG-----IPSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILV-TTRKKSV 331 (961)
Q Consensus 262 ~~~l~-----~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~~ 331 (961)
..... .........+++...+... ..+++-++|+|+++..+...|+.+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 10000 0000112233333322221 346677999999998777778889888887666666665 5454444
Q ss_pred hhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhH
Q 002132 332 ASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAA 391 (961)
Q Consensus 332 ~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 391 (961)
...+... ...+++.+++.++...++.+.+...+.. -..+....|++.++|.+.-+
T Consensus 172 ~~tI~SR-c~~~ef~~ls~~el~~~L~~i~~~egi~----ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISR-CQRYDLRRLSFEEIFKLLEYITKQENLK----TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhc-ceEEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 4333221 2679999999999999999887543321 12345677999999987544
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.6e-06 Score=95.86 Aligned_cols=196 Identities=13% Similarity=0.069 Sum_probs=113.6
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++...- ..... ...+....+-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNC-ENPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCc-ccccC--ccccCCCcHHHHHHccCC
Confidence 468999988888888887432 2246789999999999999999884311 11100 000111111111111100
Q ss_pred HH---cCC-CCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEcc-chhhhhhhc
Q 002132 263 EA---LGI-PSSNLGEFQSLLKLISE-SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTR-KKSVASMMG 336 (961)
Q Consensus 263 ~~---l~~-~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR-~~~~~~~~~ 336 (961)
.. +.. ...+..++.++.+.+.. ...++.-++|+|+++..+...++.++..+........+|++|. ...+...+.
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00 000 00011122223333322 1245667999999998877788888888866545555554554 344432222
Q ss_pred cCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhH
Q 002132 337 STDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAA 391 (961)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 391 (961)
.. ...|.+.+++.++..+++.+.+...+. .-..+....|++.++|.+.-+
T Consensus 170 SR-Cq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SR-CQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hh-hheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHHH
Confidence 11 267999999999999998887643321 112456788999999988543
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.37 E-value=5.9e-06 Score=95.45 Aligned_cols=195 Identities=15% Similarity=0.151 Sum_probs=115.9
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.++||-+..++.|...+.... -...+.++|..|+||||+|+.+++...-...+. +.++..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 468999999999888886422 234568999999999999999987531110000 00010001111111
Q ss_pred HHc-----CCCCCCCCCHHHHHHHHHH----HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccch-hhh
Q 002132 263 EAL-----GIPSSNLGEFQSLLKLISE----SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKK-SVA 332 (961)
Q Consensus 263 ~~l-----~~~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~~~ 332 (961)
..- .........++++.+.+.. -..+++-++|+|+++..+....+.++..+.......++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 100 0000001122332222211 134677799999999887778888888888766666666655544 332
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
..+.. ....+++.+++.++..+.+.+.+-..+. ....+....|++.++|.+-.+..+
T Consensus 164 ~TI~S-RC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILS-RCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHh-hheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22111 1278999999999999999876532221 112345678999999988755444
No 79
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1e-05 Score=88.31 Aligned_cols=193 Identities=15% Similarity=0.073 Sum_probs=116.4
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeE--------EEEEeCCccc
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKL--------LWVCVSDPFE 253 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~--------~wv~~s~~~~ 253 (961)
-.+++|.+...+.+.+.+.... -...+.++|+.|+||+|+|..+++..--....... .-++ ...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~--~~c- 89 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID--PDH- 89 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC--CCC-
Confidence 3579999999999998887432 23468899999999999998887743111100000 0000 000
Q ss_pred HHHHHHHHHHHcCC-----------CC---CCCCCHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhhHHhhh
Q 002132 254 QFRVAKAIAEALGI-----------PS---SNLGEFQSLLKLISESI-----TGKRFLLVLDDVWDGDCIKWEPFYLCLK 314 (961)
Q Consensus 254 ~~~~~~~i~~~l~~-----------~~---~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 314 (961)
...+.+...-.. .. ...-.++++. .+.+.+ .+.+-++|+||++..+......+...+.
T Consensus 90 --~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 90 --PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred --hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 011111110000 00 0112244433 333333 2556799999999888778888888888
Q ss_pred CCCCCcEEEEEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 315 NGLHGSKILVTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 315 ~~~~gs~iivTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
....++.+|++|.+.. +...+ ......+.+.+++.++..+++.+.... .. .+....+++.++|.|..+..
T Consensus 167 epp~~~~~IL~t~~~~~llpti-~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTI-RSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALR 237 (365)
T ss_pred cCCCCeEEEEEECCchhchHHh-hccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHH
Confidence 7666777777777654 22221 122378999999999999999875311 11 11226789999999986655
Q ss_pred H
Q 002132 394 I 394 (961)
Q Consensus 394 ~ 394 (961)
+
T Consensus 238 l 238 (365)
T PRK07471 238 L 238 (365)
T ss_pred H
Confidence 4
No 80
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.36 E-value=4.9e-07 Score=92.68 Aligned_cols=91 Identities=20% Similarity=0.126 Sum_probs=62.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc--ccHHHHHHHHHHHcCCCCCCCCCHH------HHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP--FEQFRVAKAIAEALGIPSSNLGEFQ------SLLK 280 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~l~~ 280 (961)
....+.|+|++|+|||||+++++++.... +|+.++|+.+... +++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999976443 8999999998776 7999999998332222111111111 1222
Q ss_pred HHHHH-hCCceEEEEEeCCCC
Q 002132 281 LISES-ITGKRFLLVLDDVWD 300 (961)
Q Consensus 281 ~l~~~-l~~kr~LlVlDdv~~ 300 (961)
..... -.+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 348999999999954
No 81
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.8e-07 Score=98.08 Aligned_cols=149 Identities=18% Similarity=0.123 Sum_probs=89.0
Q ss_pred cceeEEEEEeccccccc--cccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCc-
Q 002132 547 EKVRHLMLIIGREASFR--VPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPR- 623 (961)
Q Consensus 547 ~~~r~lsl~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~- 623 (961)
+++|.+++.+....... .....|+++|.|+++.|-.. .-.....+...+++|+.|+|+.|. +...-+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~----nw~~v~~i~eqLp~Le~LNls~Nr------l~~~~~s 190 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH----NWFPVLKIAEQLPSLENLNLSSNR------LSNFISS 190 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHH----hHHHHHHHHHhcccchhccccccc------ccCCccc
Confidence 34555666555443322 24566888888888776432 123344556778888888888886 322111
Q ss_pred -cccccCccceEEecCCccc--ccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCcccccccc--ccCCC
Q 002132 624 -NIEKLVHLRYLNLSCQNIR--KLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMP--VGIGR 698 (961)
Q Consensus 624 -~i~~L~~Lr~L~L~~~~i~--~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~ 698 (961)
.-..+.||+.|.|+.|+++ .+-..+..+++|+.|+|.+|..+..--....-++.|+.|++++|.. ...+ ..++.
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~ 269 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGT 269 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-ccccccccccc
Confidence 1235778888888888876 3333345678888888888753322222334566788888888753 3333 33556
Q ss_pred CCCCCcCC
Q 002132 699 LTGLRTLD 706 (961)
Q Consensus 699 L~~L~~L~ 706 (961)
++.|..|.
T Consensus 270 l~~L~~Ln 277 (505)
T KOG3207|consen 270 LPGLNQLN 277 (505)
T ss_pred ccchhhhh
Confidence 66666655
No 82
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.35 E-value=1.5e-05 Score=82.14 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=93.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
.+.+.|+|+.|+|||+|++.+++.. ......+.++.+..... ...+..+.+ ..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~----~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW--------------------FVPEVLEGM----EQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh--------------------hhHHHHHHh----hh-
Confidence 3578999999999999999999853 33334566776643110 001111111 11
Q ss_pred eEEEEEeCCCCCCc-cChhhhH-HhhhCC-CCC-cEEEEEccchh---------hhhhhccCCcceEEcCCCCHHHHHHH
Q 002132 290 RFLLVLDDVWDGDC-IKWEPFY-LCLKNG-LHG-SKILVTTRKKS---------VASMMGSTDTDIITVMELTEEECWSL 356 (961)
Q Consensus 290 r~LlVlDdv~~~~~-~~~~~l~-~~l~~~-~~g-s~iivTtR~~~---------~~~~~~~~~~~~~~l~~L~~~~~~~l 356 (961)
--+|++||+..... ..|+... ..+... ..| .++|+||+... ....+... .+++++++++++-.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g--~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG--QIYKLQPLSDEEKLQA 175 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC--ceeeecCCCHHHHHHH
Confidence 23789999976421 3454422 222221 123 37999998553 33344444 6899999999999999
Q ss_pred HHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHh
Q 002132 357 FKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSL 397 (961)
Q Consensus 357 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~ 397 (961)
+.+++...+- .--+++..-|++.+.|..-++..+-..
T Consensus 176 l~~~a~~~~~----~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 176 LQLRARLRGF----ELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHHHcCC----CCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9886643221 122567788888888876655544433
No 83
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=6.5e-06 Score=90.55 Aligned_cols=181 Identities=14% Similarity=0.094 Sum_probs=110.7
Q ss_pred CceecccchHHHHHHHHhcCCcc----cCCCeEEEEEEcCCCchHHHHHHHHhcchhhH-------------------hc
Q 002132 183 EEICGRVGERNELLSKLLCESSE----QQKGLHIISIVGMGGIGKTTLAQLACNHVEVK-------------------RK 239 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 239 (961)
.+++|-+..++.+..++...... ...-..-+.++|+.|+|||++|+.+++..--. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 35889899999999988754210 00023568899999999999999987632100 01
Q ss_pred CCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH----HhCCceEEEEEeCCCCCCccChhhhHHhhhC
Q 002132 240 FDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISE----SITGKRFLLVLDDVWDGDCIKWEPFYLCLKN 315 (961)
Q Consensus 240 f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 315 (961)
.| +.++.... ....++++...+.. -..+++-++|+|+++..+......+...+..
T Consensus 85 pD-~~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 85 PD-VRVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CC-EEEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 11 11111100 01112222222211 1235566888999998876667778888877
Q ss_pred CCCCcEEEEEccch-hhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 316 GLHGSKILVTTRKK-SVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 316 ~~~gs~iivTtR~~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
...+..+|++|.+. .+...+.. ....+.+.+++.++..+.+.+.. + .. .+.+..++..++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrS-Rc~~i~f~~~~~~~i~~~L~~~~-~-----~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRS-RCRHVALRTPSVEAVAEVLVRRD-G-----VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHh-hCeEEECCCCCHHHHHHHHHHhc-C-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 66677677666654 33322221 13789999999999998887532 1 11 345778999999999755444
No 84
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=2.7e-06 Score=97.56 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=112.5
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.... -+..+... ...+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C----~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVC----QSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCccc----HHHHHHh
Confidence 468999999999999987432 23568999999999999999887742111000 00000000 0000000
Q ss_pred HH-----cCCCCCCCCCHHHHHHHHHH----HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hh
Q 002132 263 EA-----LGIPSSNLGEFQSLLKLISE----SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VA 332 (961)
Q Consensus 263 ~~-----l~~~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~ 332 (961)
.. +.........++.+.+.+.. -..+++-++|+|+++..+......++..+.......++|++|.+.. +.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 00000111122222222221 1235667999999987765556777777776555667777765432 22
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
..+. .....+.+.+++.++....+.+.+-..+. .-..+....|++.++|.+.-+..+
T Consensus 164 ~TIr-SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 164 VTVL-SRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred hHHH-HHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHHHH
Confidence 1111 11256888999999999999887643322 112456788999999988544433
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=8e-06 Score=92.11 Aligned_cols=202 Identities=16% Similarity=0.152 Sum_probs=115.5
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhc-------------------CCeE
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRK-------------------FDKL 243 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 243 (961)
.++||.+...+.+...+.... -...+.++|++|+||||+|+.+++...-... +..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468998888787777776322 2356789999999999999999874311100 0012
Q ss_pred EEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEE
Q 002132 244 LWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISE-SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKI 322 (961)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 322 (961)
..++.+.......+ +.+.+ .+.. ...+++-++|+|+++.......+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~~-----------------~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRD-----------------AVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHHH-----------------HHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222211111111 11111 1111 12356779999999776555566677777664444555
Q ss_pred EEEccc-hhhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCC-CchhHHHHHHhhcc
Q 002132 323 LVTTRK-KSVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKG-LPLAAKTIGSLMRS 400 (961)
Q Consensus 323 ivTtR~-~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~~~~~l~~ 400 (961)
|++|.+ ..+...+... ...+++.+++.++....+.+.+...+.. -..+....|++.++| .+.|+..+-.+...
T Consensus 151 Ilattn~~kl~~~L~SR-~~vv~f~~l~~~el~~~L~~i~~~egi~----i~~eal~~Ia~~s~GdlR~aln~Le~l~~~ 225 (472)
T PRK14962 151 VLATTNLEKVPPTIISR-CQVIEFRNISDELIIKRLQEVAEAEGIE----IDREALSFIAKRASGGLRDALTMLEQVWKF 225 (472)
T ss_pred EEEeCChHhhhHHHhcC-cEEEEECCccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 544443 3333332222 2689999999999999988876432211 113456778887765 46676666554322
Q ss_pred ---CCCHHHHHHHhc
Q 002132 401 ---KQIEEEWERISN 412 (961)
Q Consensus 401 ---~~~~~~w~~~~~ 412 (961)
+-+.+....+..
T Consensus 226 ~~~~It~e~V~~~l~ 240 (472)
T PRK14962 226 SEGKITLETVHEALG 240 (472)
T ss_pred cCCCCCHHHHHHHHc
Confidence 124455554443
No 86
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=90.41 Aligned_cols=182 Identities=16% Similarity=0.124 Sum_probs=113.9
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchh------------------hH-hcCCeE
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE------------------VK-RKFDKL 243 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------------------~~-~~f~~~ 243 (961)
.++||.+..++.+...+.... -...+.++|+.|+||||+|+.+++... +. ..+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468998888888887776322 234788999999999999998876310 00 011123
Q ss_pred EEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEE
Q 002132 244 LWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKIL 323 (961)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (961)
+.++.+....+++ .+++++.... .-..++.-++|+|+++..+....+.+...+......+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3444333222222 2222222110 0123566689999998877667788888888766677777
Q ss_pred EEccc-hhhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhH
Q 002132 324 VTTRK-KSVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAA 391 (961)
Q Consensus 324 vTtR~-~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 391 (961)
++|.. ..+...+.. ....+++.+++.++..+.+.+.+...+.. -..+....|++.++|.+..+
T Consensus 151 latte~~Kl~~tI~S-Rc~~~~f~~l~~~el~~~L~~ia~~Egi~----i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIIS-RCQRFDLQKIPTDKLVEHLVDIAKKENIE----HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHH-hheeeecccccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 66643 344332221 12679999999999999998877443221 12455778999999987643
No 87
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=9.4e-06 Score=92.34 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=113.1
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|++..++.+..++.... -.+.+.++|+.|+||||+|+.+++... |.-|.... .+..-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHH
Confidence 478999999999999886432 235688999999999999999987431 11121110 111111111111
Q ss_pred HHcCC-----CCCCCCCHHHHHHH---HHHH-hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccc-hhhh
Q 002132 263 EALGI-----PSSNLGEFQSLLKL---ISES-ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRK-KSVA 332 (961)
Q Consensus 263 ~~l~~-----~~~~~~~~~~l~~~---l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~~~ 332 (961)
..... ........+++... +... ..+++-++|+|+++..+...+..+...+........+|++|.. ..+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 11000 00011122222222 1111 1234447999999887666788888888776556666655543 3332
Q ss_pred hh-hccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch-hHHHHH
Q 002132 333 SM-MGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL-AAKTIG 395 (961)
Q Consensus 333 ~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~~ 395 (961)
.. .... ..+++.+++.++....+...+...+..- ..+.+..+++.++|.+. |+..+-
T Consensus 164 ~TI~SRc--q~ieF~~Ls~~eL~~~L~~il~kegi~I----s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 164 LTIISRC--QRYNFKKLNNSELQELLKSIAKKEKIKI----EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHhhh--hhcccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 22 2222 6899999999999998888664322111 13457789999999765 444433
No 88
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.33 E-value=1.4e-05 Score=82.33 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=90.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
.+.+.|+|..|+|||+||+.+++... ... ..+.+++...... . + ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~----~------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A----F------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H----H------------------hhc-cc
Confidence 45788999999999999999998531 222 2455555433110 0 0 011 22
Q ss_pred eEEEEEeCCCCCCccChhhhHHhhhCC-CCCc-EEEEEccchhhhh--------hhccCCcceEEcCCCCHHHHHHHHHH
Q 002132 290 RFLLVLDDVWDGDCIKWEPFYLCLKNG-LHGS-KILVTTRKKSVAS--------MMGSTDTDIITVMELTEEECWSLFKR 359 (961)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~~~~~~--------~~~~~~~~~~~l~~L~~~~~~~lf~~ 359 (961)
.-+||+||+...+...-..+...+... ..+. .||+|++...... .+... ..+++.++++++-..++.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~--~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWG--LVYELKPLSDADKIAALKA 168 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcC--eEEEecCCCHHHHHHHHHH
Confidence 347899999765433333454444331 2343 4677776543222 12112 6799999999887777766
Q ss_pred HHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhh
Q 002132 360 LAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLM 398 (961)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 398 (961)
.+-..+ .. -.++....+++.+.|.+..+..+...+
T Consensus 169 ~~~~~~-v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAERG-LQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHcC-CC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 542211 11 124567788889999999887776654
No 89
>PRK05642 DNA replication initiation factor; Validated
Probab=98.32 E-value=1.9e-05 Score=81.13 Aligned_cols=156 Identities=15% Similarity=0.206 Sum_probs=95.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
...+.|+|..|+|||.|++.+++.. ...-..++|++... +... .. .+.+.+++-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 3578999999999999999998843 33334577776532 2111 01 122222222
Q ss_pred eEEEEEeCCCCCC-ccChhh-hHHhhhC-CCCCcEEEEEccchh---------hhhhhccCCcceEEcCCCCHHHHHHHH
Q 002132 290 RFLLVLDDVWDGD-CIKWEP-FYLCLKN-GLHGSKILVTTRKKS---------VASMMGSTDTDIITVMELTEEECWSLF 357 (961)
Q Consensus 290 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~~~l~~L~~~~~~~lf 357 (961)
. +||+||+.... ...|.. +...+.. ...|..||+|++... ....+... .++++++++.++-.+++
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g--l~~~l~~~~~e~~~~il 175 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA--LVFQMRGLSDEDKLRAL 175 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC--eeeecCCCCHHHHHHHH
Confidence 2 68899997432 234544 4444432 224667899887543 12222222 67899999999999999
Q ss_pred HHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhh
Q 002132 358 KRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLM 398 (961)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 398 (961)
+.++...+- .- -+++..-|++.+.|..-.+..+-..|
T Consensus 176 ~~ka~~~~~-~l---~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 176 QLRASRRGL-HL---TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHcCC-CC---CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 976643321 11 14678888998888776665554443
No 90
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.2e-05 Score=92.94 Aligned_cols=197 Identities=14% Similarity=0.166 Sum_probs=113.6
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC--CeEEEEEeCCcccHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF--DKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~ 260 (961)
.++||-+..++.|..++.... -...+.++|..|+||||+|+.+++...-.... ...-. ..+..-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 468998888888888887432 33567899999999999999986642100000 00000 00010111111
Q ss_pred HHHH-----cCCCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccc-hh
Q 002132 261 IAEA-----LGIPSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRK-KS 330 (961)
Q Consensus 261 i~~~-----l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~ 330 (961)
|... +.........++++.+.+... ..++.-++|+|+++..+...++.+...+.......++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 1100 000001112233333322221 1345568999999988777788888888776556666665543 33
Q ss_pred hhh-hhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 331 VAS-MMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 331 ~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
+.. ..... ..+++++++.++..+.+.+.+...+.. -..+....|++.++|.+.-+..+
T Consensus 167 il~TIlSRc--~~~~f~~Ls~eei~~~L~~i~~~egi~----ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRC--LQFNLRPMAPETVLEHLTQVLAAENVP----AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhc--eeeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 322 22222 789999999999999998876433221 12356788899999987554443
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.30 E-value=2.6e-05 Score=86.70 Aligned_cols=186 Identities=13% Similarity=0.100 Sum_probs=113.3
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhH--------------------hcCC
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK--------------------RKFD 241 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~ 241 (961)
-.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+.....-. .+++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 3468999999999999886432 23578899999999999999887743100 1222
Q ss_pred eEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcE
Q 002132 242 KLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSK 321 (961)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 321 (961)
. +++..+...... -.+++++.+.. .-..+++-++|+|+++.........+...+......+.
T Consensus 88 ~-~~~~~~~~~~~~-~~~~l~~~~~~----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 V-IEIDAASNNGVD-DIREILDNVKY----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred E-EEeeccccCCHH-HHHHHHHHHhc----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 2 222222111111 11222222111 01224556899999977655566777777766555667
Q ss_pred EEEEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHH
Q 002132 322 ILVTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIG 395 (961)
Q Consensus 322 iivTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 395 (961)
+|++|.+.. +...+... ...+++.++++++..+++...+-..+. . -..+.+..|++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr-~~~~~~~~~~~~~l~~~l~~~~~~~g~-~---i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSR-CQRFDFKRIPLEDIVERLKKILDKEGI-K---IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhh-eeEEEcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCChHHHHHHH
Confidence 777765443 22222211 257899999999999999887643221 1 113567889999999987665443
No 92
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.7e-08 Score=100.23 Aligned_cols=143 Identities=20% Similarity=0.187 Sum_probs=84.5
Q ss_pred ccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEE
Q 002132 721 ACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELE 800 (961)
Q Consensus 721 ~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 800 (961)
...++.-.+|..|+++.+.... +.+....+.+|+.|..|+|+|+...+ +........+ -++|+.|+
T Consensus 227 ~~~iAkN~~L~~lnlsm~sG~t-----~n~~~ll~~scs~L~~LNlsWc~l~~-------~~Vtv~V~hi--se~l~~LN 292 (419)
T KOG2120|consen 227 VNTIAKNSNLVRLNLSMCSGFT-----ENALQLLLSSCSRLDELNLSWCFLFT-------EKVTVAVAHI--SETLTQLN 292 (419)
T ss_pred HHHHhccccceeeccccccccc-----hhHHHHHHHhhhhHhhcCchHhhccc-------hhhhHHHhhh--chhhhhhh
Confidence 3445555667777776555432 23344567788999999999987653 1111112222 25788899
Q ss_pred EeeecCCC---CCCCccccccCccEEEEeCCCCCCc--CCCCCCccccceeecccccCceEeCCcccCCcccCcCcccce
Q 002132 801 IRFYRGNT---VFPNWLMSLTNLRSLVLYGCENCEQ--LPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKS 875 (961)
Q Consensus 801 l~~~~~~~---~lp~~~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~ 875 (961)
|+||.-.- ++..-...+|+|..|+|++|..... ...+-+++.|++|+++.|..+ +|..+... ...|+|.+
T Consensus 293 lsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l---~s~psl~y 367 (419)
T KOG2120|consen 293 LSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLEL---NSKPSLVY 367 (419)
T ss_pred hhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeee---ccCcceEE
Confidence 98876321 1111123688888888888854332 122667888888888887643 22222221 45677777
Q ss_pred eeccccc
Q 002132 876 LTISSML 882 (961)
Q Consensus 876 L~l~~~~ 882 (961)
|++.+|.
T Consensus 368 Ldv~g~v 374 (419)
T KOG2120|consen 368 LDVFGCV 374 (419)
T ss_pred EEecccc
Confidence 7776663
No 93
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.2e-05 Score=91.63 Aligned_cols=184 Identities=14% Similarity=0.119 Sum_probs=112.6
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh-------------------cCCeE
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-------------------KFDKL 243 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 243 (961)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.. .|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999996432 234678999999999999998887431111 11112
Q ss_pred EEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEE
Q 002132 244 LWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKIL 323 (961)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 323 (961)
+.++.+....++++ +++++.+.. .-..++.-++|+|+++..+....+.+...+......+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 23322222222211 222221111 1123566789999999887777888888888766667777
Q ss_pred EEccch-hhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 324 VTTRKK-SVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 324 vTtR~~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
++|.+. .+...+.. ....+++.+++.++....+.+.+-..+..- ..+....|++.++|.+.-+..
T Consensus 154 lattd~~kl~~tI~S-Rc~~~~f~~l~~~~i~~~l~~il~~egi~~----~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 154 LATTDHHKLPVTVLS-RCLQFHLAQLPPLQIAAHCQHLLKEENVEF----ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEECChHhchHHHHH-HhhhhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHH
Confidence 665443 32222111 126789999999998887776653322111 134567888999998864443
No 94
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.28 E-value=2e-06 Score=91.55 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=67.4
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc--cHHHHHHHHHHHcCCCCCC
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF--EQFRVAKAIAEALGIPSSN 271 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~ 271 (961)
++++.+..-. +-+...|+|++|+||||||+++|++.... +|+.++||.+.+.. ++.++++.+...+-....+
T Consensus 158 rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 5566665433 34567899999999999999999986544 89999999999887 7778887776322212222
Q ss_pred CCCHHH------HHHHHHHH-hCCceEEEEEeCCCC
Q 002132 272 LGEFQS------LLKLISES-ITGKRFLLVLDDVWD 300 (961)
Q Consensus 272 ~~~~~~------l~~~l~~~-l~~kr~LlVlDdv~~ 300 (961)
.....+ ..+.-+.. -.+++.+|++|++..
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 211111 11111111 358999999999953
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.27 E-value=4.9e-06 Score=98.29 Aligned_cols=174 Identities=19% Similarity=0.247 Sum_probs=98.4
Q ss_pred CceecccchHH---HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 183 EEICGRVGERN---ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 183 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
.+|+|.+..+. .+...+.. .....+.++|++|+||||||+.+++. ...+|. .++.+. ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh-----
Confidence 46889887764 45555542 24566789999999999999999984 333431 111110 000
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHh--CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEE--ccchh--hhh
Q 002132 260 AIAEALGIPSSNLGEFQSLLKLISESI--TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVT--TRKKS--VAS 333 (961)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT--tR~~~--~~~ 333 (961)
.+...........+ .+++.+|||||++..+...++.+...+. .|+.++|+ |.+.. +..
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 01111112222222 2467899999998765555556655443 35555553 44432 111
Q ss_pred hhccCCcceEEcCCCCHHHHHHHHHHHHcCCC---CCCChhhHHHHHHHHHhhcCCCchh
Q 002132 334 MMGSTDTDIITVMELTEEECWSLFKRLAFFGP---SINDCEKLEQIGRRIAGKFKGLPLA 390 (961)
Q Consensus 334 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~---~~~~~~~~~~~~~~i~~~c~G~PLa 390 (961)
.... ....+.+++++.++...++.+.+-... ......-.++....|++.+.|..-.
T Consensus 155 aL~S-R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 155 ALVS-RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred Hhhc-cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 1111 126799999999999999987653100 0001112245667888888886543
No 96
>PRK09087 hypothetical protein; Validated
Probab=98.27 E-value=2e-05 Score=80.25 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=87.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
.+.+.|+|..|+|||+|++.+++.. ...+++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHhh---------------------hc-
Confidence 3678999999999999999888742 12233321 1111121111 11
Q ss_pred eEEEEEeCCCCCC--ccChhhhHHhhhCCCCCcEEEEEccc---------hhhhhhhccCCcceEEcCCCCHHHHHHHHH
Q 002132 290 RFLLVLDDVWDGD--CIKWEPFYLCLKNGLHGSKILVTTRK---------KSVASMMGSTDTDIITVMELTEEECWSLFK 358 (961)
Q Consensus 290 r~LlVlDdv~~~~--~~~~~~l~~~l~~~~~gs~iivTtR~---------~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~ 358 (961)
-+|++||+.... +..+..+...+.. .|..||+|++. +.....+... .++++++++.++-.++++
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~g--l~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAA--TVVEIGEPDDALLSQVIF 163 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCC--ceeecCCCCHHHHHHHHH
Confidence 278889996532 2222223322332 36679998874 2333444444 789999999999999999
Q ss_pred HHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHH
Q 002132 359 RLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIG 395 (961)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 395 (961)
+.+...+- . --+++..-|++.+.|..-++..+-
T Consensus 164 ~~~~~~~~-~---l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 164 KLFADRQL-Y---VDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHHcCC-C---CCHHHHHHHHHHhhhhHHHHHHHH
Confidence 88743221 1 124567788888888776666443
No 97
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.27 E-value=2.2e-05 Score=79.61 Aligned_cols=188 Identities=14% Similarity=0.188 Sum_probs=103.2
Q ss_pred CCceecccch-HHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 182 EEEICGRVGE-RNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 182 ~~~~vGr~~~-~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
++-++|...+ .-.....+.... +.....+.|+|..|+|||.|.+.+++.......-..+++++ ..++...
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~ 78 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIRE 78 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHH
Confidence 3344565333 233444444333 22344578999999999999999999642221222466664 3455666
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCcc-Chhh-hHHhhhC-CCCCcEEEEEccchh-------
Q 002132 261 IAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCI-KWEP-FYLCLKN-GLHGSKILVTTRKKS------- 330 (961)
Q Consensus 261 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~~-l~~~l~~-~~~gs~iivTtR~~~------- 330 (961)
+...+.. ...+ .+++.+++ -=+|++||++..... .|.. +...+.. ...|.+||+|++...
T Consensus 79 ~~~~~~~-----~~~~----~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~ 148 (219)
T PF00308_consen 79 FADALRD-----GEIE----EFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL 148 (219)
T ss_dssp HHHHHHT-----TSHH----HHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-
T ss_pred HHHHHHc-----ccch----hhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC
Confidence 6655533 1122 23344442 348899999764322 2333 2222221 124668999996542
Q ss_pred --hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 331 --VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 331 --~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
....+..+ -++++++.++++..+++.+++...+-. --+++++-|++.+.+..-.+..+
T Consensus 149 ~~L~SRl~~G--l~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 149 PDLRSRLSWG--LVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHHCS--EEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhhhHhhc--chhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHH
Confidence 33334444 689999999999999999988543321 22456777887777665555444
No 98
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.26 E-value=1.4e-05 Score=82.41 Aligned_cols=196 Identities=17% Similarity=0.113 Sum_probs=121.4
Q ss_pred chHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh----cCCeEEEEEeCCcccHHHHHHHHHHHc
Q 002132 190 GERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR----KFDKLLWVCVSDPFEQFRVAKAIAEAL 265 (961)
Q Consensus 190 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l 265 (961)
+.++++.+++..+. ..+.+-+.|||..|.|||++++++++.--... .--.++.|.+...++...++..|++++
T Consensus 44 ~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 45566667676554 44677899999999999999999986421110 011478888899999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHhCC-ceEEEEEeCCCCC---C---ccChhhhHHhhhCCCCCcEEEEEccchhhhhhhccC
Q 002132 266 GIPSSNLGEFQSLLKLISESITG-KRFLLVLDDVWDG---D---CIKWEPFYLCLKNGLHGSKILVTTRKKSVASMMGST 338 (961)
Q Consensus 266 ~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~---~---~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~~~~ 338 (961)
+.+.........+.......++. +-=+||+|++++. . +.+.-.....+.+.-.-+-|.+-|+..--+-..+..
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 99876666666665555555553 3348899999763 1 112223333444444456666666654322111110
Q ss_pred ---CcceEEcCCCCHH-HHHHHHHHHH--cCCCCCCChhhHHHHHHHHHhhcCCCch
Q 002132 339 ---DTDIITVMELTEE-ECWSLFKRLA--FFGPSINDCEKLEQIGRRIAGKFKGLPL 389 (961)
Q Consensus 339 ---~~~~~~l~~L~~~-~~~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~G~PL 389 (961)
...++.+++...+ +...|+.... .+-.. ...-...++++.|...++|+.=
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchH
Confidence 1256777777654 4444543322 11111 1112346789999999999764
No 99
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=2e-05 Score=84.25 Aligned_cols=214 Identities=14% Similarity=0.086 Sum_probs=126.5
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
.+..++||+.|+..+.+++...-+ ....+-+.|.|.+|.|||.+...++.+..-...=-.+++++.-.--....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 345799999999999999986654 345678899999999999999999987532222124577777665667777777
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHhCCc--eEEEEEeCCCCCCccChhhhHHhhhCC-CCCcEEEEEccch--hhh---
Q 002132 261 IAEALGIPSSNLGEFQSLLKLISESITGK--RFLLVLDDVWDGDCIKWEPFYLCLKNG-LHGSKILVTTRKK--SVA--- 332 (961)
Q Consensus 261 i~~~l~~~~~~~~~~~~l~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~--~~~--- 332 (961)
|...+...........+.++.+.++..+. -+|+|+|.++......-..+...|.+. -+++|+|+.---. +..
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 77776211111111145555666665533 689999998754222223333333332 2566665542211 111
Q ss_pred ----hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCC-ChhhHHHHHHHHHhhcCCCchhHHHHHH
Q 002132 333 ----SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSIN-DCEKLEQIGRRIAGKFKGLPLAAKTIGS 396 (961)
Q Consensus 333 ----~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~~~i~~~c~G~PLai~~~~~ 396 (961)
..-....+..+..+|.+.++..++|..+.-...... .+..++-.|++++.-.|.+--|+.+.-+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 110122347889999999999999998874332211 1123333333443333444444444433
No 100
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=1.5e-06 Score=68.29 Aligned_cols=57 Identities=28% Similarity=0.416 Sum_probs=30.5
Q ss_pred ceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCcccccch-hhhccCCCcEEeecCcc
Q 002132 601 SLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCL 663 (961)
Q Consensus 601 ~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~ 663 (961)
+|++|++++|. +..+| ..+..+++|++|++++|.++.+|. .+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~------l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK------LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST------ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC------CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555 55554 244555555555555555555543 34555555555555554
No 101
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.24 E-value=4.8e-05 Score=76.11 Aligned_cols=181 Identities=22% Similarity=0.193 Sum_probs=105.4
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+|+|.++.++++.-++..... .++.+..+.++|++|.||||||.-+++.. ...+ -+.-.....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Em--gvn~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANEL--GVNL----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHh--cCCe----EecccccccChhhHHHHH
Confidence 5799998888887766654332 14567789999999999999999999953 2222 111111111111122222
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhC--------CCCCcE-----------EE
Q 002132 263 EALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKN--------GLHGSK-----------IL 323 (961)
Q Consensus 263 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--------~~~gs~-----------ii 323 (961)
..+ + ..=++.+|.++......-+.+..++.+ .++++| |=
T Consensus 99 t~L---------------------e-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 99 TNL---------------------E-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred hcC---------------------C-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 222 2 233555676655433222223222222 123333 33
Q ss_pred EEccchhhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHH
Q 002132 324 VTTRKKSVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGS 396 (961)
Q Consensus 324 vTtR~~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~ 396 (961)
-|||.-.+.......-..+.+++-.+.+|-.++..+.+..-.- .-.++-+.+|+++..|-|.-+.-+-+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 5888765555444332256889999999999999888732111 12245688999999999975544433
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.7e-05 Score=88.55 Aligned_cols=201 Identities=14% Similarity=0.162 Sum_probs=113.8
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEE-eCCcccHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVC-VSDPFEQFRVAKAI 261 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i 261 (961)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-........|.. +..++..=...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 478998888888888886322 224578999999999999999887431111111111110 00000000111111
Q ss_pred HHHcCC-----CCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEc-cchhh
Q 002132 262 AEALGI-----PSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTT-RKKSV 331 (961)
Q Consensus 262 ~~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~~ 331 (961)
...... ........+++.+..... ..+++-++|+|+++......++.+...+.+....+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 110000 000111233333222111 23556689999998876667888888888766677766555 43444
Q ss_pred hhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 332 ASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 332 ~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
...+... ...+++.++++++..+.+...+-..+. .-..+.+..|++.++|.+--+..
T Consensus 171 ~~tl~sR-~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 171 PATIASR-CQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHH-HHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3322211 257899999999999888876632221 11245678999999998854433
No 103
>PLN03150 hypothetical protein; Provisional
Probab=98.21 E-value=2.6e-06 Score=100.77 Aligned_cols=93 Identities=27% Similarity=0.374 Sum_probs=73.7
Q ss_pred ceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc-ccchhhhccCCCcEEeecCcccccccchhhhcccCCc
Q 002132 601 SLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR-KLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMK 679 (961)
Q Consensus 601 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 679 (961)
.++.|+|++|.. ...+|..+++|.+|++|+|++|.+. .+|..++++++|++|+|++|.....+|..+++|++|+
T Consensus 419 ~v~~L~L~~n~L-----~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGL-----RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCc-----cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 477788888761 2357778888888888888888876 7788888888888888888886667888888888888
Q ss_pred eeecCCccccccccccCCC
Q 002132 680 HLLNYRTDSLRYMPVGIGR 698 (961)
Q Consensus 680 ~L~l~~~~~~~~~p~~i~~ 698 (961)
+|++++|.....+|..++.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred EEECcCCcccccCChHHhh
Confidence 8888888776777777654
No 104
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=1.8e-06 Score=102.14 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=40.4
Q ss_pred cceEEecCCccc-ccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 631 LRYLNLSCQNIR-KLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 631 Lr~L~L~~~~i~-~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
++.|+|++|.+. .+|..+++|++|+.|+|++|.....+|..++.+++|+.|++++|.....+|..+++|++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 445555555544 4455555555555555555553345555555555555555555544444555555555555555
No 105
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=1.6e-06 Score=68.00 Aligned_cols=58 Identities=26% Similarity=0.415 Sum_probs=51.1
Q ss_pred CccceEEecCCcccccch-hhhccCCCcEEeecCcccccccc-hhhhcccCCceeecCCcc
Q 002132 629 VHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLEELP-EGIGKLINMKHLLNYRTD 687 (961)
Q Consensus 629 ~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 687 (961)
++|++|++++|.++.+|. .+.++++|++|++++|. +..+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 579999999999999985 67899999999999998 56665 578999999999999985
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.6e-05 Score=88.52 Aligned_cols=180 Identities=15% Similarity=0.155 Sum_probs=111.3
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh-------------------cCCeE
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-------------------KFDKL 243 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 243 (961)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++...-.. .|.-+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999988887432 234568999999999999999877431100 01112
Q ss_pred EEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH----HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCC
Q 002132 244 LWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISE----SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHG 319 (961)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 319 (961)
+++..+.. ...+++.+.+.. -..+++-++|+|+++..+....+.+...+......
T Consensus 91 ~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 22222111 122222222211 12356779999999887766677788888776566
Q ss_pred cEEEEEccch-hhhhh-hccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch-hHHHH
Q 002132 320 SKILVTTRKK-SVASM-MGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL-AAKTI 394 (961)
Q Consensus 320 s~iivTtR~~-~~~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~ 394 (961)
+.+|++|.+. .+... ... ...+++.+++.++..+.+.+.+...+. . ...+....|++.++|.+- |+..+
T Consensus 150 ~~fIL~t~d~~kil~tI~SR--c~~~~f~~l~~~~i~~~L~~il~~egi-~---~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSR--CLQFNLKQMPPPLIVSHLQHILEQENI-P---FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEEeCChhhCchhHHHH--HHHHhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666665443 22211 111 267999999999999888776533221 1 123456788999999875 33333
No 107
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.18 E-value=1.8e-05 Score=79.93 Aligned_cols=187 Identities=16% Similarity=0.076 Sum_probs=115.9
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCe-EEEEEeCCcccHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDK-LLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~ 260 (961)
-.+++|-+..+..+...+.. ...++...+|++|.|||+-|..+++..--.+-|.+ +.-.++|...... +.++
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh
Confidence 34689999999999888875 25688999999999999999988875322233433 3333444322111 1000
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHh--CCce-EEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhhhhcc
Q 002132 261 IAEALGIPSSNLGEFQSLLKLISESI--TGKR-FLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMMGS 337 (961)
Q Consensus 261 i~~~l~~~~~~~~~~~~l~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~~~ 337 (961)
...+.+.+.....+.. ..++ -++|||+++....+.|..++..+.+....++.|+.+..-..--..-.
T Consensus 108 ----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 ----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0111111111110000 0123 48899999999889999999999887777777766654432111111
Q ss_pred CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch
Q 002132 338 TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL 389 (961)
Q Consensus 338 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 389 (961)
.....+..++|.+++...-++..+-.++-.. ..+..+.|++.++|--.
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~----d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDI----DDDALKLIAKISDGDLR 225 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCcHH
Confidence 1125689999999999888888775443322 24556788899988543
No 108
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.17 E-value=4.2e-05 Score=86.29 Aligned_cols=170 Identities=18% Similarity=0.138 Sum_probs=103.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
...+.|+|..|+|||+|++.+++.......-..+++++ ..++...+...+.... .....+++.++ +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 34589999999999999999998532222223445543 3456667666654211 11223333333 3
Q ss_pred eEEEEEeCCCCCCc-cCh-hhhHHhhhC-CCCCcEEEEEccchh---------hhhhhccCCcceEEcCCCCHHHHHHHH
Q 002132 290 RFLLVLDDVWDGDC-IKW-EPFYLCLKN-GLHGSKILVTTRKKS---------VASMMGSTDTDIITVMELTEEECWSLF 357 (961)
Q Consensus 290 r~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~~~l~~L~~~~~~~lf 357 (961)
.-+||+||+..... ..| +.+...+.. ...|..||+|+.... +...+..+ -++.+++++.++-.+++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G--l~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG--LSIAIQKLDNKTATAII 284 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC--ceeccCCcCHHHHHHHH
Confidence 44889999976432 122 334333332 123457888876432 22233333 67899999999999999
Q ss_pred HHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHh
Q 002132 358 KRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSL 397 (961)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~ 397 (961)
.+++-..+. . ..-.+++..-|++.++|.|-.+..+...
T Consensus 285 ~~~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 285 KKEIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 998743221 0 1123567889999999999877766543
No 109
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.15 E-value=3.8e-06 Score=88.82 Aligned_cols=292 Identities=21% Similarity=0.213 Sum_probs=182.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcC-CeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKF-DKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
..+.+.++|.|||||||++-.+.. ++..| +.+.++....--+...+.-.+...++..... .+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 457899999999999999998888 34556 5677777777777777777667667665432 1223345566777
Q ss_pred CceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhhhhccCCcceEEcCCCCHH-HHHHHHHHHHcCCCC
Q 002132 288 GKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMMGSTDTDIITVMELTEE-ECWSLFKRLAFFGPS 366 (961)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~ 366 (961)
++|.++|+||-.+.- ..-..+...+-.+...-.|+.|+|...... +...+.+.+|+.. ++.++|...+.....
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~~-----ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILVA-----GEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhccc-----ccccccCCccccCCchhHHHHHHHHHhcc
Confidence 889999999985431 122333444555556667888988764322 2256778888765 788888666522111
Q ss_pred -CCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCCCH-------HHHHHHhcCcccchhhhhhhHHHHHHHhhcCCCh
Q 002132 367 -INDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQIE-------EEWERISNSDLWRVEEMEKGVLSSLLLSYNDLPS 438 (961)
Q Consensus 367 -~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~-------~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 438 (961)
.--..........|.++..|.|++|..+++..+.-... +.|..+-+- .....--.......+.+||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhh
Confidence 11112234567899999999999999999988765321 223222111 000011134577889999999999
Q ss_pred hhHHHHhhhccCCCCCccChHHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHHhCCCcccccccCCCceeeEeechhHHH
Q 002132 439 KVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAKQNKEMETIGEEYFSILASRSFFQEFEKSYDNRIIECKMHDIVHD 518 (961)
Q Consensus 439 ~~k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mHdlv~~ 518 (961)
..+-.|--++.|...+... ...|.+-|-.... ..-....-+..+++.+++-..... + ...|+.-+-++.
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~----~~y~~~~a~~ll~~kslv~a~~~~--~-~a~~Rl~eT~r~ 308 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVDV----PRYLVLLALTLLVDKSLVVALDLL--G-RARYRLLETGRR 308 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCcccc----chHHHHHHHHHHhhccchhhhhhh--h-HHHHHHHHHHHH
Confidence 9999999999997765443 3455554432210 111223336677888876543221 1 123555666666
Q ss_pred HHHhhc
Q 002132 519 FARFVS 524 (961)
Q Consensus 519 ~a~~~~ 524 (961)
|+..+.
T Consensus 309 YalaeL 314 (414)
T COG3903 309 YALAEL 314 (414)
T ss_pred HHHHHH
Confidence 665543
No 110
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.15 E-value=1.2e-07 Score=99.01 Aligned_cols=294 Identities=18% Similarity=0.167 Sum_probs=169.0
Q ss_pred CceeEEecCCCCCCCCccccccCccccccCccceEEecCCc-cc--ccchhhhccCCCcEEeecCcccccccc-h-hhhc
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQN-IR--KLPETLCELYNLEKLYITRCLYLEELP-E-GIGK 674 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~-i~--~Lp~~i~~L~~L~~L~L~~~~~l~~lp-~-~i~~ 674 (961)
..||.|.+.|+..+.. ..+-..-.++++++.|++.++. |+ .+-..-..+++|++|++..|..+...- . -...
T Consensus 138 g~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 4689999999985432 2222334567788888877664 43 122222467888888888876543321 1 2346
Q ss_pred ccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccc
Q 002132 675 LINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLE 754 (961)
Q Consensus 675 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 754 (961)
+++|.+|++++|..+.. .+++. ...++++++.+...++...+. ++....
T Consensus 215 C~kL~~lNlSwc~qi~~--------~gv~~------------------~~rG~~~l~~~~~kGC~e~~l-----e~l~~~ 263 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISG--------NGVQA------------------LQRGCKELEKLSLKGCLELEL-----EALLKA 263 (483)
T ss_pred hhhHHHhhhccCchhhc--------CcchH------------------HhccchhhhhhhhcccccccH-----HHHHHH
Confidence 78888888888854322 11222 122333344443334332211 000000
Q ss_pred cCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCc-cc-cccCccEEEEeCCCCCC
Q 002132 755 LDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNW-LM-SLTNLRSLVLYGCENCE 832 (961)
Q Consensus 755 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~-~~-~l~~L~~L~L~~~~~~~ 832 (961)
-..+.-+..+++..+... .+..+...-..+..|+.|+.+++....+.+-| ++ +.++|+.|-+..|+...
T Consensus 264 ~~~~~~i~~lnl~~c~~l---------TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 264 AAYCLEILKLNLQHCNQL---------TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred hccChHhhccchhhhccc---------cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh
Confidence 011112223333222211 12333344445678899999887764434433 22 68999999999998544
Q ss_pred cC--CCC-CCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceec
Q 002132 833 QL--PPL-GKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLT 909 (961)
Q Consensus 833 ~l--~~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~ 909 (961)
.. ..+ .+.+.|+.+++.+|..+... .+.... .++|.|++|.++.|...+.-.. .........+..|+.|.
T Consensus 335 d~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls--~~C~~lr~lslshce~itD~gi---~~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 335 DRGFTMLGRNCPHLERLDLEECGLITDG--TLASLS--RNCPRLRVLSLSHCELITDEGI---RHLSSSSCSLEGLEVLE 407 (483)
T ss_pred hhhhhhhhcCChhhhhhcccccceehhh--hHhhhc--cCCchhccCChhhhhhhhhhhh---hhhhhccccccccceee
Confidence 32 224 37899999999988744322 121111 4789999999998854443311 00111123688999999
Q ss_pred ccccccCcC-CCCCCCCCCCccEEEEccccccccc
Q 002132 910 IARCPKLKA-LPDHIHQTTTLKELRIWACELLGKH 943 (961)
Q Consensus 910 l~~c~~L~~-lp~~~~~l~~L~~L~l~~~~~l~~~ 943 (961)
+.+||.+.. .-..+..+++|+.+++.+|....+-
T Consensus 408 L~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 408 LDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred ecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 999997763 2234466899999999999886553
No 111
>PF14516 AAA_35: AAA-like domain
Probab=98.15 E-value=0.00049 Score=74.82 Aligned_cols=204 Identities=13% Similarity=0.131 Sum_probs=122.5
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-----ccHH
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-----FEQF 255 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~ 255 (961)
+.+..|.|....+++.+.+..+ ...+.|.|+-.+|||+|...+.+.. +..-..++++++..- .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l--~~~~~~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERL--QQQGYRCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHH--HHCCCEEEEEEeecCCCcccCCHH
Confidence 4456778887777778777643 3578999999999999999998854 333345678887542 2355
Q ss_pred HHHHHH----HHHcCCCCC-------CCCCHHHHHHHHHHHh---CCceEEEEEeCCCCCCc--cChhhhHHhhhC----
Q 002132 256 RVAKAI----AEALGIPSS-------NLGEFQSLLKLISESI---TGKRFLLVLDDVWDGDC--IKWEPFYLCLKN---- 315 (961)
Q Consensus 256 ~~~~~i----~~~l~~~~~-------~~~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~---- 315 (961)
++++.+ .++++.... ...........+.+++ .+++.+|++|+++..-. .-...+...++.
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 455444 445544321 1112233344444432 26899999999975421 112334333332
Q ss_pred CC-----CCcEEEEEccchh-hhhhhccCC---cceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCC
Q 002132 316 GL-----HGSKILVTTRKKS-VASMMGSTD---TDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKG 386 (961)
Q Consensus 316 ~~-----~gs~iivTtR~~~-~~~~~~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 386 (961)
.. ..-++++....+. ........+ ...++|.+++.+|...|+.+.-.. .. ....++|...++|
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~---~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FS---QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CC---HHHHHHHHHHHCC
Confidence 11 1112222222111 111111111 257899999999999999876421 11 1228899999999
Q ss_pred CchhHHHHHHhhccC
Q 002132 387 LPLAAKTIGSLMRSK 401 (961)
Q Consensus 387 ~PLai~~~~~~l~~~ 401 (961)
+|.-+..++..+..+
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999764
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=4.8e-05 Score=91.24 Aligned_cols=192 Identities=13% Similarity=0.078 Sum_probs=112.5
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.++||.+..++.|..++.... -...+.++|..|+||||+|+.+++...-....... .+... ...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHH
Confidence 468999999999999887432 23567899999999999999998753111110000 00000 0001110
Q ss_pred HH-------cCCCCCCCCCHHHHHHHHH----HHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccc-hh
Q 002132 263 EA-------LGIPSSNLGEFQSLLKLIS----ESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRK-KS 330 (961)
Q Consensus 263 ~~-------l~~~~~~~~~~~~l~~~l~----~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~ 330 (961)
.. +.........++++.+... .-..++.-++|||+++..+...++.|+..+.+....+.+|++|.+ ..
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 00 0000001112233222111 123456668999999988877888899999886666666665543 33
Q ss_pred hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhH
Q 002132 331 VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAA 391 (961)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 391 (961)
+...+... ...|++.+++.++..+++.+.+-..+. . ...+....|++.++|.+..+
T Consensus 163 Ll~TIrSR-c~~v~F~~l~~~~l~~~L~~il~~EGv-~---id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 163 VIGTIRSR-THHYPFRLVPPEVMRGYLERICAQEGV-P---VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhHHHHhh-eeEEEeeCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 43322211 278999999999999888776532221 1 12345678899999988433
No 113
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=4.5e-05 Score=88.38 Aligned_cols=198 Identities=13% Similarity=0.106 Sum_probs=115.7
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCC--eEEEEEeCCcccHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFD--KLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~ 260 (961)
.+++|.+..++.|...+.... -..-+.++|+.|+||||+|+.+++...-..... ...+- .+..-.-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHH
Confidence 468999999999999887432 234688999999999999999988431111000 00000 0000011111
Q ss_pred HHHHcCC-----CCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEc-cchh
Q 002132 261 IAEALGI-----PSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTT-RKKS 330 (961)
Q Consensus 261 i~~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 330 (961)
|...-.. .......++++...+... ..+++-++|+|+++..+....+.+...+......+++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2211110 001112233333222111 23455689999998876667788888887766677776655 3333
Q ss_pred hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 331 VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
+...+.. ....+++.+++.++....+.+.+-..+.. -..+....|++.++|.+.-+...
T Consensus 175 ll~tI~S-Rcq~~~f~~l~~~el~~~L~~i~~kegi~----i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLS-RCQRFDLRRIEADVLAAHLSRIAAKEGVE----VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322221 12679999999999999998876433211 11356788999999988655443
No 114
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=6.9e-05 Score=86.32 Aligned_cols=199 Identities=14% Similarity=0.093 Sum_probs=115.0
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-....+ +-.+... ...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhh
Confidence 468999999999999887432 234578999999999999999887431000000 0000000 0111111
Q ss_pred HHc-------CCCCCCCCCHHH---HHHHHHHH-hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEc-cchh
Q 002132 263 EAL-------GIPSSNLGEFQS---LLKLISES-ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTT-RKKS 330 (961)
Q Consensus 263 ~~l-------~~~~~~~~~~~~---l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~ 330 (961)
..- .........+++ +.+.+... ..+++-++|+|+++..+....+.|+..+........+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 000 000001111222 22222211 23556689999998887777888888888766666666555 4444
Q ss_pred hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch-hHHHHHHhh
Q 002132 331 VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL-AAKTIGSLM 398 (961)
Q Consensus 331 ~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~~~~l 398 (961)
+...+... ...+++.+++.++..+.+.+.+...+.. -..+....|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SR-c~~~~F~~l~~~~i~~~L~~i~~~egi~----i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSR-THHYPFRLLPPRTMRALIARICEQEGVV----VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHh-ceEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33322211 2789999999999998888766433221 113456788999999874 444444433
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.7e-05 Score=87.29 Aligned_cols=199 Identities=13% Similarity=0.133 Sum_probs=114.2
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|-+..++.|...+.... -...+.++|+.|+||||+|+.+++...-....+. ..+..=...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 467898888888888776322 2467889999999999999998875311100000 0000001111111
Q ss_pred HHcCC-----CCCCCCCHHHH---HHHHHH-HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccc-hhhh
Q 002132 263 EALGI-----PSSNLGEFQSL---LKLISE-SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRK-KSVA 332 (961)
Q Consensus 263 ~~l~~-----~~~~~~~~~~l---~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~~~ 332 (961)
..... .......++++ .+.+.. -..+++-++|+|+++..+...+..|...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 10000 00001112222 211211 12456679999999887766777888888765455666665554 3333
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc-hhHHHHHHhh
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP-LAAKTIGSLM 398 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P-Lai~~~~~~l 398 (961)
..+.. ....+++.+++.++....+...+...+.. -..+.++.|++.++|.+ .|+..+..++
T Consensus 164 ~TI~S-Rcq~i~F~pLs~~eL~~~L~~il~~egi~----id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVS-RCQHFTFTRLSEAGLEAHLTKVLGREGVD----YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHh-hhhccccCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22211 12678999999999999998866433211 12456788999999965 5666665544
No 116
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.12 E-value=9.7e-05 Score=77.04 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=109.3
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
.+.+.+|+.++..+..++..... --...|.|+|..|.|||.+.+++.+.. . -..+|+++-..++.+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHH
Confidence 56788999999999998875542 134556999999999999999999954 1 236899999999999999999
Q ss_pred HHHcCCC-CCCC-CC-----HHHHHHHHHH--HhC--CceEEEEEeCCCCCCccChhhhHHhh--hC-CCCCcEEEEEcc
Q 002132 262 AEALGIP-SSNL-GE-----FQSLLKLISE--SIT--GKRFLLVLDDVWDGDCIKWEPFYLCL--KN-GLHGSKILVTTR 327 (961)
Q Consensus 262 ~~~l~~~-~~~~-~~-----~~~l~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l--~~-~~~gs~iivTtR 327 (961)
+.+.... .+.. .+ .......+.+ ... ++.++||||+++...+-+-.-+...+ .. .....-+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 9998522 2211 11 1122223333 122 46899999999765322211111111 11 112233444444
Q ss_pred chhhhhh---hccCCcceEEcCCCCHHHHHHHHHHH
Q 002132 328 KKSVASM---MGSTDTDIITVMELTEEECWSLFKRL 360 (961)
Q Consensus 328 ~~~~~~~---~~~~~~~~~~l~~L~~~~~~~lf~~~ 360 (961)
....... ++.....++..+..+.+|..+++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3322222 34444467888999999999999774
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=7.4e-05 Score=87.02 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=110.8
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEE-------eCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVC-------VSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-------~s~~~~~~ 255 (961)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..- ..+.. ..+-. ....+++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~-~~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALN-CSHKT-DLLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhc-ccccC-CCCCchhHHHHhhcCCCcEE
Confidence 468999998999999887432 345678999999999999999887421 10100 00000 00000000
Q ss_pred HHHHHHHHHcCCCC-CCCCCHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEc-cchhhh
Q 002132 256 RVAKAIAEALGIPS-SNLGEFQSLLKLISES-ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTT-RKKSVA 332 (961)
Q Consensus 256 ~~~~~i~~~l~~~~-~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~~~ 332 (961)
.+.... ....+++++.+.+... ..+++-++|+|+++......+..+...+........+|++| +...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 000000 0011122222222211 23666799999998877677888888887755555555444 444443
Q ss_pred hh-hccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 333 SM-MGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 333 ~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
.. .... ..+++.+++.++....+...+...+.. ...+.++.|++.++|.+.-+..
T Consensus 163 ~TI~SRc--q~ieF~~L~~eeI~~~L~~il~kegI~----id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 163 LTILSRV--QRFNFRRISEDEIVSRLEFILEKENIS----YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHHHhhc--eeEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 22 2222 689999999999998888765332211 1134577899999997754433
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=7.2e-05 Score=83.23 Aligned_cols=182 Identities=17% Similarity=0.190 Sum_probs=106.5
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhH------hcCCe-EEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK------RKFDK-LLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~-~~wv~~s~~~~~~ 255 (961)
.+++|.+...+.+...+.... -.+.+.++|+.|+||||+|+.+.+...-. ..|.. ++-+........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 468999999999999886422 34688899999999999999997743110 11111 111111111111
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEc-cchhhhhh
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTT-RKKSVASM 334 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~~~~~ 334 (961)
+..+.+++++.. .-..+++-++|+|+++......+..+...+......+.+|++| ....+...
T Consensus 91 ~~i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 91 DDIRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111111211110 0122455689999997665555677777676544455566555 33333222
Q ss_pred hccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhH
Q 002132 335 MGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAA 391 (961)
Q Consensus 335 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 391 (961)
.... ...++..++++++....+...+...+-. -..+.+..|++.++|.+-.+
T Consensus 155 l~sr-~~~v~~~~~~~~~l~~~l~~~~~~~g~~----i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 155 ILSR-CQIFDFKRITIKDIKEHLAGIAVKEGIK----FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHhc-ceeEecCCccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhCCCCHHHH
Confidence 2111 2579999999999999888876433221 11356788888999876533
No 119
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.11 E-value=1.7e-07 Score=97.74 Aligned_cols=309 Identities=17% Similarity=0.118 Sum_probs=184.9
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecC-Ccccc--cch
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSC-QNIRK--LPE 646 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~-~~i~~--Lp~ 646 (961)
..||.|.+.+...- ....+..+...++++..|++.+|..+++.....+ -..++.|++|+|.. ..|+. |-.
T Consensus 138 g~lk~LSlrG~r~v----~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl---a~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAV----GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSL---ARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccC----CcchhhHHhhhCCchhhhhhhcceeccHHHHHHH---HHhcchhhhhhhcccchhHHHHHHH
Confidence 46888888887522 2233555667899999999999986543222222 24688999999987 45662 222
Q ss_pred hhhccCCCcEEeecCcccccc--cchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCccccc
Q 002132 647 TLCELYNLEKLYITRCLYLEE--LPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWF 724 (961)
Q Consensus 647 ~i~~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l 724 (961)
-...+++|.+|+++.|..+.. +..-..+.++|+.+.+.||... .|+.|.. .-
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-----------~le~l~~---------------~~ 264 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-----------ELEALLK---------------AA 264 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-----------cHHHHHH---------------Hh
Confidence 345789999999999985443 1111233444555544444211 0111110 00
Q ss_pred ccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhC-CCCCCCceEEEee
Q 002132 725 ESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEAL-QPPPDLKELEIRF 803 (961)
Q Consensus 725 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~ 803 (961)
.+...+..+++..+....+.. ....-..+..|+.|..+.+... ...++..+ ...++|+.|.+.+
T Consensus 265 ~~~~~i~~lnl~~c~~lTD~~-----~~~i~~~c~~lq~l~~s~~t~~----------~d~~l~aLg~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLTDED-----LWLIACGCHALQVLCYSSCTDI----------TDEVLWALGQHCHNLQVLELSG 329 (483)
T ss_pred ccChHhhccchhhhccccchH-----HHHHhhhhhHhhhhcccCCCCC----------chHHHHHHhcCCCceEEEeccc
Confidence 111222233333332222111 1112234667788887765432 23344443 4568999999999
Q ss_pred ecCCCCC-CCccc-cccCccEEEEeCCCCCCc--CCC-CCCccccceeecccccCceEeCCcccCCcccCcCcccceeec
Q 002132 804 YRGNTVF-PNWLM-SLTNLRSLVLYGCENCEQ--LPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTI 878 (961)
Q Consensus 804 ~~~~~~l-p~~~~-~l~~L~~L~L~~~~~~~~--l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l 878 (961)
|....+. -..++ +.+.|+.+++.+|....+ +.. -.++|.|+.|.|++|..+++.+...+... ..+...|+.|.|
T Consensus 330 c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~-~c~~~~l~~lEL 408 (483)
T KOG4341|consen 330 CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS-SCSLEGLEVLEL 408 (483)
T ss_pred cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc-cccccccceeee
Confidence 8743322 11222 789999999999975432 333 34789999999999997776543222211 146778999999
Q ss_pred cccccccccccccccccccccccccccceecccccccCcCCC--CCCCCCCCccEEEE
Q 002132 879 SSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALP--DHIHQTTTLKELRI 934 (961)
Q Consensus 879 ~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp--~~~~~l~~L~~L~l 934 (961)
++++.+++-..+. ...+++|+.+++.+|.....-| ..-.++|+++...+
T Consensus 409 ~n~p~i~d~~Le~-------l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 409 DNCPLITDATLEH-------LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cCCCCchHHHHHH-------HhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 9998776644332 2368899999999998776433 22356777766543
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=3.7e-05 Score=90.13 Aligned_cols=196 Identities=14% Similarity=0.135 Sum_probs=114.9
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-..... ....+..-...+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 478999999999988886432 235678999999999999999987431000000 001111112233332
Q ss_pred HHcCCC-----CCCCCCHHHHHHHH---HH-HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccc-hhhh
Q 002132 263 EALGIP-----SSNLGEFQSLLKLI---SE-SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRK-KSVA 332 (961)
Q Consensus 263 ~~l~~~-----~~~~~~~~~l~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~~~ 332 (961)
...... .......+++...+ .. -..+++-++|+|+++.......+.|...+......+.+|++|.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 221110 00112233322222 11 12255679999999877656677788777776556666666543 3333
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
..+... ...+.+.+++.++....+...+...+.. -..+.+..|++.++|.+..+...
T Consensus 165 ~tI~SR-~~~i~f~~l~~~el~~~L~~~a~~egl~----i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSR-CQRFDFHRHSVADMAAHLRKIAAAEGIN----LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhc-cceeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222111 2578899999999998888776432211 11356789999999988655444
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=0.00012 Score=82.96 Aligned_cols=181 Identities=14% Similarity=0.116 Sum_probs=114.1
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh--c----------------CC-eE
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR--K----------------FD-KL 243 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~----------------f~-~~ 243 (961)
.+++|-+...+.+...+.... -..++.++|+.|+||||+|+.+++..--.. . +. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 468998888888888886432 335678999999999999998876421000 0 00 11
Q ss_pred EEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCC
Q 002132 244 LWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHG 319 (961)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 319 (961)
+++..+.. ...+++...+... ..+++-++|+|+++..+....+.++..+......
T Consensus 89 ~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 22211111 1123333333221 1255668999999888777778888888776666
Q ss_pred cEEEEEccch-hhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 320 SKILVTTRKK-SVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 320 s~iivTtR~~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
+++|++|.+. .+...... ....+++.+++.++....+.+.+...+.. -..+.+..|++.++|.+.-+...
T Consensus 148 t~FIL~ttd~~kL~~tI~S-Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~----i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILS-RTQHFRFKQIPQNSIISHLKTILEKEGVS----YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHh-hceeEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHH
Confidence 7777776553 22211111 12689999999999999988766433221 12456789999999998655444
No 122
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.05 E-value=3.8e-05 Score=84.06 Aligned_cols=120 Identities=11% Similarity=0.179 Sum_probs=78.3
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.++++.+...+.+...|.. .+.|.++|++|+|||++|+.+++.......|+.+.||.++...+..+++..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 4578889999999998873 24578899999999999999998654445778899999999888777654221
Q ss_pred HHcCCCCCCCCCH-HHHHHHHHHHhC--CceEEEEEeCCCCCCccC-hhhhHHhhh
Q 002132 263 EALGIPSSNLGEF-QSLLKLISESIT--GKRFLLVLDDVWDGDCIK-WEPFYLCLK 314 (961)
Q Consensus 263 ~~l~~~~~~~~~~-~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~-~~~l~~~l~ 314 (961)
- ...+-.-. .-..+.+.+... +++++||+|++...+... +..+...+.
T Consensus 247 P----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 P----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred C----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 0 00000000 111222223222 468999999998765433 444444444
No 123
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00013 Score=84.63 Aligned_cols=197 Identities=15% Similarity=0.184 Sum_probs=111.1
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEE-eCCcccHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVC-VSDPFEQFRVAKAI 261 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i 261 (961)
.+++|-+..++.+...+.... -...+.++|+.|+||||+|+.+++...-....+...|-. +...+..=...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468998888888888886322 234588999999999999998887531111111001110 00000000111111
Q ss_pred HHHcCC-----CCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEc-cchhh
Q 002132 262 AEALGI-----PSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTT-RKKSV 331 (961)
Q Consensus 262 ~~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~~ 331 (961)
...-.. ........+++...+... ..+.+-++|+|+++.......+.|...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 110000 000112233333322222 23556688999998876667788888888765566655544 44444
Q ss_pred hhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch
Q 002132 332 ASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL 389 (961)
Q Consensus 332 ~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 389 (961)
...+.. ....+++.+++.++....+.+.+...+. . -..+.++.|++.++|..-
T Consensus 171 l~TI~S-Rc~~vef~~l~~~ei~~~L~~i~~~egi-~---I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIAS-RCQRFNFKRIPLDEIQSQLQMICRAEGI-Q---IDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHh-hceEEecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHhCCCHH
Confidence 332221 1278999999999998888776533221 1 124567889999999665
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00016 Score=82.08 Aligned_cols=185 Identities=16% Similarity=0.130 Sum_probs=110.0
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhh--Hh-----------------cCCeE
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV--KR-----------------KFDKL 243 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-----------------~f~~~ 243 (961)
.+++|-+...+.+..++.... -...+.++|+.|+||||+|+.++....- .. .|..+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468899999999988886432 2355678999999999999998774210 00 01111
Q ss_pred EEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEE
Q 002132 244 LWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISE-SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKI 322 (961)
Q Consensus 244 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 322 (961)
+++..+....+ .+.+.+.+.+.. -..+++-++|+|+++.......+.+...+........+
T Consensus 91 ~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 22211111100 111222222211 12366779999999877655667787777765555556
Q ss_pred EEEc-cchhhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHH
Q 002132 323 LVTT-RKKSVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIG 395 (961)
Q Consensus 323 ivTt-R~~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 395 (961)
|++| +...+....... ...+.+.+++.++....+.+.+-..+-. ...+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SR-c~~i~f~~ls~~el~~~L~~i~k~egi~----id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSR-CQRFIFSKPTKEQIKEYLKRICNEEKIE----YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHh-ceEEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555 433333222111 2678999999999998888876433221 123556788889999776554443
No 125
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.04 E-value=5.3e-05 Score=82.62 Aligned_cols=149 Identities=19% Similarity=0.158 Sum_probs=87.5
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
-.+++|.+...+.+..++.... -..++.++|++|+||||+|+.+++.. .. .+..++.+. .... ..+..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~~~-~i~~~ 87 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CRID-FVRNR 87 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-ccHH-HHHHH
Confidence 3578999999999999887422 34677789999999999999998842 11 233444443 1111 11111
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhh-hhhhccC
Q 002132 262 AEALGIPSSNLGEFQSLLKLISE-SITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSV-ASMMGST 338 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~-~~~~~~~ 338 (961)
+..+ ... ...+.+-++|+||++.. .......+...+.....++++|+||..... ......
T Consensus 88 l~~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s- 150 (316)
T PHA02544 88 LTRF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS- 150 (316)
T ss_pred HHHH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh-
Confidence 1111 000 01234568999999765 222234455555555567789988875431 111111
Q ss_pred CcceEEcCCCCHHHHHHHHHH
Q 002132 339 DTDIITVMELTEEECWSLFKR 359 (961)
Q Consensus 339 ~~~~~~l~~L~~~~~~~lf~~ 359 (961)
....+.+...+.++..+++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 114677777788887766554
No 126
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.02 E-value=0.00026 Score=79.81 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=94.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcC--CeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKF--DKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
...+.|+|..|+|||+|++.+++.. .... ..+++++. .++...+...+... ..+.. .+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEEF----KEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHH----HHHHH
Confidence 3568899999999999999999964 3322 34666643 33444555544321 22222 22332
Q ss_pred CceEEEEEeCCCCCCccC-h-hhhHHhhhCC-CCCcEEEEEccchh---------hhhhhccCCcceEEcCCCCHHHHHH
Q 002132 288 GKRFLLVLDDVWDGDCIK-W-EPFYLCLKNG-LHGSKILVTTRKKS---------VASMMGSTDTDIITVMELTEEECWS 355 (961)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~-~-~~l~~~l~~~-~~gs~iivTtR~~~---------~~~~~~~~~~~~~~l~~L~~~~~~~ 355 (961)
+ .-+|||||++.....+ + +.+...+... ..+..||+|+.... +...+... ..+.+.+.+.++-.+
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g--~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWG--LVVDIEPPDLETRLA 275 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCC--eEEEeCCCCHHHHHH
Confidence 2 3489999997643221 1 2233333221 23456888876432 11122222 478999999999999
Q ss_pred HHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 356 LFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 356 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
++.+.+..... .-.+++...|++.+.|.+-.+.-
T Consensus 276 il~~~~~~~~~----~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 276 ILQKKAEEEGL----ELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHHcCC----CCCHHHHHHHHHhcCCCHHHHHH
Confidence 99988754322 11246677888888887665443
No 127
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.02 E-value=8.6e-06 Score=87.41 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=62.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc--ccHHHHHHHHHHHcCCCCCCCCCH------HHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP--FEQFRVAKAIAEALGIPSSNLGEF------QSLLK 280 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~l~~ 280 (961)
.-..++|+|++|+|||||++.+++... ..+|+..+||.+.+. .++.++++.+...+-....+.... ....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 346789999999999999999999753 337999999999866 789999999854332222221111 11122
Q ss_pred HHHHH-hCCceEEEEEeCCCC
Q 002132 281 LISES-ITGKRFLLVLDDVWD 300 (961)
Q Consensus 281 ~l~~~-l~~kr~LlVlDdv~~ 300 (961)
..... -+|++.+|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 22222 358999999999954
No 128
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.01 E-value=3.5e-05 Score=85.41 Aligned_cols=182 Identities=16% Similarity=0.077 Sum_probs=99.6
Q ss_pred CCCceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCccc
Q 002132 181 DEEEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFE 253 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 253 (961)
...++.|++..++++.+.+...-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3457899999999998877432110 0012355889999999999999999984 33332 22221
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCCCC-----------ccChhhhHHhh---hC--C
Q 002132 254 QFRVAKAIAEALGIPSSNLGEFQSLLKLISES-ITGKRFLLVLDDVWDGD-----------CIKWEPFYLCL---KN--G 316 (961)
Q Consensus 254 ~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l---~~--~ 316 (961)
..+. .... .+.....+.+.+. -.....+|++||++... ......+...+ .. .
T Consensus 190 -~~l~----~~~~------g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELV----RKYI------GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHH----HHhh------hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 1110 0111122222222 23456899999986531 01112232332 21 1
Q ss_pred CCCcEEEEEccchhhhh-hhcc--CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc
Q 002132 317 LHGSKILVTTRKKSVAS-MMGS--TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP 388 (961)
Q Consensus 317 ~~gs~iivTtR~~~~~~-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 388 (961)
..+.+||.||....... .+.. .-...+.+...+.++..++|...+.+.... ..-. ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 24667888887553211 1110 012578999999999999998877433211 1112 356677777654
No 129
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00019 Score=83.98 Aligned_cols=182 Identities=17% Similarity=0.163 Sum_probs=113.0
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchh---------------------hHhcCC
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE---------------------VKRKFD 241 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~f~ 241 (961)
.+++|.+...+.+..++.... -...+.++|+.|+||||+|+.+++... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999987432 235688999999999999998877431 011232
Q ss_pred eEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcE
Q 002132 242 KLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSK 321 (961)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 321 (961)
. ..++.+....+.+ ++++++++... -..+++=++|+|+++..+...++.+...+......+.
T Consensus 92 ~-~~ld~~~~~~vd~-Ir~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 I-HELDAASNNSVDD-IRNLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred e-EEecccccCCHHH-HHHHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 1 2222221111111 11111211110 0124556889999988877778889888887666666
Q ss_pred EEEEc-cchhhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHH
Q 002132 322 ILVTT-RKKSVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAK 392 (961)
Q Consensus 322 iivTt-R~~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 392 (961)
+|++| ....+...+... ..++++.+++.++....+.+.+...+- . -..+.+..|++.++|..--+.
T Consensus 154 fIL~tt~~~kIl~tI~SR-c~iv~f~~ls~~ei~~~L~~ia~~egi-~---i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 154 FILATTEKHKILPTILSR-CQIFDFNRIQVADIVNHLQYVASKEGI-T---AEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EEEEeCCchhchHHHHhh-hheeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 66544 444443332221 268999999999999998876643321 1 113467889999999775443
No 130
>CHL00181 cbbX CbbX; Provisional
Probab=97.98 E-value=0.00039 Score=73.60 Aligned_cols=137 Identities=15% Similarity=0.078 Sum_probs=74.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
..+.++|++|+||||+|+.+++.......-...-|+.++. .++ ...+.+.. .......+.+. . .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~~-----~~~~~~~l~~a-~--g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGHT-----APKTKEVLKKA-M--G 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhccc-----hHHHHHHHHHc-c--C
Confidence 4578999999999999999988431111111112444442 122 22221111 11122223322 2 2
Q ss_pred EEEEEeCCCCC---------CccChhhhHHhhhCCCCCcEEEEEccchhhhhhh------ccCCcceEEcCCCCHHHHHH
Q 002132 291 FLLVLDDVWDG---------DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMM------GSTDTDIITVMELTEEECWS 355 (961)
Q Consensus 291 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~------~~~~~~~~~l~~L~~~~~~~ 355 (961)
-+|++|++... ..+.-..+...+.+...+.+||+++....+.... ...-...+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 49999999652 1112233444444444556777777544332211 11112579999999999999
Q ss_pred HHHHHHcC
Q 002132 356 LFKRLAFF 363 (961)
Q Consensus 356 lf~~~~~~ 363 (961)
++...+-.
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 99887743
No 131
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.5e-07 Score=92.01 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=52.3
Q ss_pred ceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc-ccchhhhccCCCcEEeecCcccccccc--hhhhcccC
Q 002132 601 SLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR-KLPETLCELYNLEKLYITRCLYLEELP--EGIGKLIN 677 (961)
Q Consensus 601 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-~Lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~ 677 (961)
.|+.|||+.... + ...+-..+.+|.+|+.|+|.++.+. .+-..|.+-.+|+.|+|+.|..+.+.. --+.+++.
T Consensus 186 Rlq~lDLS~s~i-t---~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVI-T---VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhhe-e---HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 577788876651 1 1123334566777788888777765 445566777778888888776544322 22456777
Q ss_pred CceeecCCcc
Q 002132 678 MKHLLNYRTD 687 (961)
Q Consensus 678 L~~L~l~~~~ 687 (961)
|..|+++.|.
T Consensus 262 L~~LNlsWc~ 271 (419)
T KOG2120|consen 262 LDELNLSWCF 271 (419)
T ss_pred HhhcCchHhh
Confidence 7777777774
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00023 Score=83.23 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=114.1
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.+++..-- ...+... ...+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c-~~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNC-LNSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcC-CCcCCCC----CCCCcccHHHHHHh
Confidence 468899999999988887432 2356789999999999999999885311 1110000 01111112222222
Q ss_pred HHcCC-----CCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccch-hhh
Q 002132 263 EALGI-----PSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKK-SVA 332 (961)
Q Consensus 263 ~~l~~-----~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~~~ 332 (961)
..... .......++++.+.+... ..+++-++|+|+++......++.|...+........+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 21111 011112233333333221 13556689999998877667888888887755556666555433 222
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
..+.. ....+++.+++.++....+...+...+..- ..+.+..|++.++|.+..+...
T Consensus 166 pTIrS-Rc~~~~f~~l~~~ei~~~L~~ia~kegi~i----s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIIS-RCQRFDFRRIPLEAMVQHLSEIAEKESIEI----EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHh-heeEEEecCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 22211 126788899999998888877653322111 1345788999999988655443
No 133
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00016 Score=81.63 Aligned_cols=178 Identities=16% Similarity=0.149 Sum_probs=106.9
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhH---------------------hcCC
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK---------------------RKFD 241 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~ 241 (961)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 478999999999998886422 23567899999999999999887743110 0111
Q ss_pred eEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCc
Q 002132 242 KLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISE-SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGS 320 (961)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 320 (961)
.+++........ .++.++.+.+.. ...+++-++|+|+++.......+.+...+.+.....
T Consensus 92 -~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111111111001 111111111111 123566789999997765555667777777755566
Q ss_pred EEEEEccc-hhhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch
Q 002132 321 KILVTTRK-KSVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL 389 (961)
Q Consensus 321 ~iivTtR~-~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 389 (961)
.+|++|.. ..+...+.. ....+++.++++++....+.+.+-..+. .-..+.+..|++.++|.+-
T Consensus 153 ~~Il~t~~~~kl~~tI~s-Rc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 153 KFFLATTEIHKIPGTILS-RCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLR 217 (451)
T ss_pred eEEEEeCChHhcchHHHH-hceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 67766643 222222111 1267999999999999888876533221 1124567889999999764
No 134
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=1.1e-05 Score=57.85 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=26.4
Q ss_pred CccceEEecCCcccccchhhhccCCCcEEeecCcccccccc
Q 002132 629 VHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELP 669 (961)
Q Consensus 629 ~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp 669 (961)
++|++|++++|.|+.+|..+++|++|++|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 35777777777777777777777777777777776 44443
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.94 E-value=9.5e-05 Score=89.97 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=86.6
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh----cCCeEEE-EEeCCcccHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR----KFDKLLW-VCVSDPFEQFRV 257 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~w-v~~s~~~~~~~~ 257 (961)
..++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+++...-.. -.+..+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 468999999999999987543 23456999999999999999998431110 0122232 22221
Q ss_pred HHHHHHHcCCCCCCCCCHH-HHHHHHHHHh-CCceEEEEEeCCCCCC-------ccChh-hhHHhhhCCCCCcEEEEEcc
Q 002132 258 AKAIAEALGIPSSNLGEFQ-SLLKLISESI-TGKRFLLVLDDVWDGD-------CIKWE-PFYLCLKNGLHGSKILVTTR 327 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~-~l~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~-~l~~~l~~~~~gs~iivTtR 327 (961)
+........+.+ .+...+.+.- .+++.+|++|+++... ..+-. .+...+..+ .-++|-||.
T Consensus 254 -------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT 324 (852)
T TIGR03345 254 -------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATT 324 (852)
T ss_pred -------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecC
Confidence 000000111121 2222222222 2568999999986531 11211 233333322 345666666
Q ss_pred chhhhhhhccC-----CcceEEcCCCCHHHHHHHHHHH
Q 002132 328 KKSVASMMGST-----DTDIITVMELTEEECWSLFKRL 360 (961)
Q Consensus 328 ~~~~~~~~~~~-----~~~~~~l~~L~~~~~~~lf~~~ 360 (961)
..+....+... ....+.+++++.++..++++..
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 54332211110 2368999999999999997544
No 136
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=1.1e-06 Score=99.19 Aligned_cols=101 Identities=28% Similarity=0.348 Sum_probs=65.7
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcc
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKL 675 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 675 (961)
+..++.|..|++.+|. +..+...+..+.+|++|+|++|.|+.+.. +..|..|+.|++++|. +..++. +..+
T Consensus 91 l~~~~~l~~l~l~~n~------i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~~-~~~l 161 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK------IEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDISG-LESL 161 (414)
T ss_pred cccccceeeeeccccc------hhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhccC-Cccc
Confidence 5667777777777777 66665556777778888887777777643 6667777777777776 555543 5557
Q ss_pred cCCceeecCCcccccccccc-CCCCCCCCcCC
Q 002132 676 INMKHLLNYRTDSLRYMPVG-IGRLTGLRTLD 706 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~ 706 (961)
++|+.+++++|.. ..+... +..+.+|+.+.
T Consensus 162 ~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~ 192 (414)
T KOG0531|consen 162 KSLKLLDLSYNRI-VDIENDELSELISLEELD 192 (414)
T ss_pred hhhhcccCCcchh-hhhhhhhhhhccchHHHh
Confidence 7777777777753 222221 34455555544
No 137
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=4.1e-06 Score=83.65 Aligned_cols=205 Identities=20% Similarity=0.175 Sum_probs=113.6
Q ss_pred HHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc----ccchhhhccCCCcEEeecCcccc-ccc
Q 002132 594 ELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR----KLPETLCELYNLEKLYITRCLYL-EEL 668 (961)
Q Consensus 594 ~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~----~Lp~~i~~L~~L~~L~L~~~~~l-~~l 668 (961)
.+-..+..++.|||.+|.. ++ ..++-..+.+|++|++|+|++|.+. .+| -.+.+|++|.|+++..- ...
T Consensus 65 ~~~~~~~~v~elDL~~N~i-Sd--WseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLI-SD--WSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred HHHHHhhhhhhhhcccchh-cc--HHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhh
Confidence 3345678888899988872 11 2334445678888999999888754 444 34678888888877621 223
Q ss_pred chhhhcccCCceeecCCcccccccc---ccCCC-CCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCC
Q 002132 669 PEGIGKLINMKHLLNYRTDSLRYMP---VGIGR-LTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDV 744 (961)
Q Consensus 669 p~~i~~L~~L~~L~l~~~~~~~~~p---~~i~~-L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~ 744 (961)
...+..+|.++.|+++.|+. ..+- ..+.. -+.+.+|+ .++++..++..-+...
T Consensus 139 ~s~l~~lP~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh-------------------~~~c~~~~w~~~~~l~--- 195 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLH-------------------QLPCLEQLWLNKNKLS--- 195 (418)
T ss_pred hhhhhcchhhhhhhhccchh-hhhccccccccccchhhhhhh-------------------cCCcHHHHHHHHHhHH---
Confidence 34456677777777766631 1110 00000 00111111 1111111111111111
Q ss_pred CChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCC--CCccccccCccE
Q 002132 745 SDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVF--PNWLMSLTNLRS 822 (961)
Q Consensus 745 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~ 822 (961)
.-.+++..+.+..++..+ ...-.+..++|.+..|+|..+++.. . -..+.+++.|..
T Consensus 196 -----------r~Fpnv~sv~v~e~PlK~----------~s~ek~se~~p~~~~LnL~~~~ids-wasvD~Ln~f~~l~d 253 (418)
T KOG2982|consen 196 -----------RIFPNVNSVFVCEGPLKT----------ESSEKGSEPFPSLSCLNLGANNIDS-WASVDALNGFPQLVD 253 (418)
T ss_pred -----------hhcccchheeeecCcccc----------hhhcccCCCCCcchhhhhccccccc-HHHHHHHcCCchhhe
Confidence 112445555555554432 2223456677778888888776433 1 112447899999
Q ss_pred EEEeCCCCCCcCCC-------CCCccccceeecc
Q 002132 823 LVLYGCENCEQLPP-------LGKLQSLEKLSLT 849 (961)
Q Consensus 823 L~L~~~~~~~~l~~-------l~~l~~L~~L~L~ 849 (961)
|.+.++++++.+.. ++.|++++.|+=+
T Consensus 254 lRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 254 LRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred eeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 99999988876643 5678888887654
No 138
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.92 E-value=0.00046 Score=68.96 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=71.1
Q ss_pred CCCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 180 IDEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
+.-.+++|.+.+++.|++-...--. .....-+.+||..|.|||++++.+.+.. ...-=.. |.|..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y--~~~GLRl--Iev~k--------- 88 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEY--ADQGLRL--IEVSK--------- 88 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHH--hhcCceE--EEECH---------
Confidence 3455799999999888764322111 1233557789999999999999998843 2221112 22222
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC---CCCcEEEEEccc
Q 002132 260 AIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG---LHGSKILVTTRK 328 (961)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs~iivTtR~ 328 (961)
.+..++..+.+.++. ...||+|++||+.-. ....+..+++.+..+ .+...+|.+|.+
T Consensus 89 ----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 89 ----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred ----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 122333444444442 356999999998643 334567777766542 233344444443
No 139
>PRK06620 hypothetical protein; Validated
Probab=97.91 E-value=0.00033 Score=70.70 Aligned_cols=138 Identities=17% Similarity=0.072 Sum_probs=80.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 5689999999999999998877431 1 1111 00000 0 011 123
Q ss_pred EEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhh-------hhhhccCCcceEEcCCCCHHHHHHHHHHHHcC
Q 002132 291 FLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSV-------ASMMGSTDTDIITVMELTEEECWSLFKRLAFF 363 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~-------~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 363 (961)
-++++||++..+......+...+. ..|..||+|++.... ...+... -+++++++++++-..++++.+..
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHHHHHHHH
Confidence 478899997432111222222222 346689999885432 2223333 58999999999988888877642
Q ss_pred CCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 364 GPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 364 ~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
.+- . --+++.+-|++.+.|.--.+.-+
T Consensus 163 ~~l-~---l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 163 SSV-T---ISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred cCC-C---CCHHHHHHHHHHccCCHHHHHHH
Confidence 211 1 12456777888887765544433
No 140
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00057 Score=74.24 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=93.2
Q ss_pred CCceecccchHH-HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 182 EEEICGRVGERN-ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 182 ~~~~vGr~~~~~-~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
+.-++|-..... .+...+.... ......+.|||..|.|||.|++.+.+. ..........+.++. +.....
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~---g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~s----e~f~~~ 157 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENP---GGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLTS----EDFTND 157 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhcc---CCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEeccH----HHHHHH
Confidence 334566554433 2233333222 124678999999999999999999995 444444333333332 334444
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCc-cChhh-hHHhhhC-CCCCcEEEEEccch--------
Q 002132 261 IAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDC-IKWEP-FYLCLKN-GLHGSKILVTTRKK-------- 329 (961)
Q Consensus 261 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtR~~-------- 329 (961)
++..+.. .-...+++.. .-=++++||++.... +.|+. +...+.. ...|..||+|++..
T Consensus 158 ~v~a~~~---------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~ 226 (408)
T COG0593 158 FVKALRD---------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLE 226 (408)
T ss_pred HHHHHHh---------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcccc
Confidence 4444321 1122344444 334889999976321 12222 3333322 12344899998654
Q ss_pred -hhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCC
Q 002132 330 -SVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGP 365 (961)
Q Consensus 330 -~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 365 (961)
.+...+..+ -++.+.+.+.+....++.+++...+
T Consensus 227 ~rL~SR~~~G--l~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 227 DRLRSRLEWG--LVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred HHHHHHHhce--eEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 244444554 7899999999999999999775433
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.89 E-value=0.00056 Score=77.20 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=95.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCC-eEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFD-KLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITG 288 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 288 (961)
..-+.|+|..|+|||+|++.+++... +.+.. .++|++. .++..++...+... ..+. +.+....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHHHh
Confidence 34589999999999999999999542 22233 4666654 34566666655321 1222 2233333
Q ss_pred ceEEEEEeCCCCCCc-cCh-hhhHHhhhC-CCCCcEEEEEcc-chhhh--------hhhccCCcceEEcCCCCHHHHHHH
Q 002132 289 KRFLLVLDDVWDGDC-IKW-EPFYLCLKN-GLHGSKILVTTR-KKSVA--------SMMGSTDTDIITVMELTEEECWSL 356 (961)
Q Consensus 289 kr~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtR-~~~~~--------~~~~~~~~~~~~l~~L~~~~~~~l 356 (961)
+.-+|++||++.... ..+ +.+...+.. ...|..||+||. .+... ..+... .++.+++.+.++-.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g--l~v~i~~pd~e~r~~I 271 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG--LVAKLEPPDEETRKKI 271 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC--ceEeeCCCCHHHHHHH
Confidence 455899999975311 112 223333321 113456888875 33211 112222 5789999999999999
Q ss_pred HHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 357 FKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 357 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
+++.+..... . --.++...|++.+.|..-.+.-
T Consensus 272 L~~~~~~~~~-~---l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 272 ARKMLEIEHG-E---LPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHhcCC-C---CCHHHHHHHHhccccCHHHHHH
Confidence 9988743221 1 1245678888888876554443
No 142
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00072 Score=72.45 Aligned_cols=195 Identities=17% Similarity=0.130 Sum_probs=114.3
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhH--------------hcCCeEEEEEeC
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK--------------RKFDKLLWVCVS 249 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------~~f~~~~wv~~s 249 (961)
+++|.+..++.+...+.... -.....++|+.|+||+++|..+++..--. .|.| ..|+.-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~ 78 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPT 78 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecc
Confidence 57899999999998886432 24789999999999999998887643100 1112 2333211
Q ss_pred CcccHHHHHHHHHHHcC--CCCCCCCCHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEE
Q 002132 250 DPFEQFRVAKAIAEALG--IPSSNLGEFQSLLKLISESI-----TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKI 322 (961)
Q Consensus 250 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 322 (961)
...+-..+-..-++..+ ......-.+++.. .+.+.+ .+.+-++|+|+++..+......+...+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000001011111221 1111122233322 233332 3567799999998887777888888887765 4455
Q ss_pred EEEccch-hhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 323 LVTTRKK-SVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 323 ivTtR~~-~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
|++|.+. .+...+.+ ....+++.++++++..+.+.+...... .......++..++|.|..+...
T Consensus 157 ILi~~~~~~Ll~TI~S-Rcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVS-RCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHh-hceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHH
Confidence 5555443 33222222 127899999999999999988642111 0111357889999999766543
No 143
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.87 E-value=2.9e-06 Score=95.97 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=36.0
Q ss_pred hcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchh-hhcc
Q 002132 597 RESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEG-IGKL 675 (961)
Q Consensus 597 ~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L 675 (961)
..+++|++|++++|. +..+. .+..+..|+.|++++|.|..++. +..+.+|+.+++++|. +..++.. +..+
T Consensus 115 ~~~~~L~~L~ls~N~------I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~~~~~ 185 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNK------ITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNR-IVDIENDELSEL 185 (414)
T ss_pred hhhhcchheeccccc------ccccc-chhhccchhhheeccCcchhccC-CccchhhhcccCCcch-hhhhhhhhhhhc
Confidence 344555555555554 33332 23344445555555555444432 2334555555555544 3333222 2444
Q ss_pred cCCceeecCCc
Q 002132 676 INMKHLLNYRT 686 (961)
Q Consensus 676 ~~L~~L~l~~~ 686 (961)
.+|+.+++.+|
T Consensus 186 ~~l~~l~l~~n 196 (414)
T KOG0531|consen 186 ISLEELDLGGN 196 (414)
T ss_pred cchHHHhccCC
Confidence 44555544444
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00052 Score=77.21 Aligned_cols=154 Identities=19% Similarity=0.135 Sum_probs=88.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
...+.|+|+.|+|||+|++.+++.. ......+++++. ..+...+...+... .. ..++..++ +
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 3568899999999999999999954 333334566643 34445555554321 11 12333333 3
Q ss_pred eEEEEEeCCCCCCccCh--hhhHHhhhC-CCCCcEEEEEccch-h--------hhhhhccCCcceEEcCCCCHHHHHHHH
Q 002132 290 RFLLVLDDVWDGDCIKW--EPFYLCLKN-GLHGSKILVTTRKK-S--------VASMMGSTDTDIITVMELTEEECWSLF 357 (961)
Q Consensus 290 r~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~gs~iivTtR~~-~--------~~~~~~~~~~~~~~l~~L~~~~~~~lf 357 (961)
.-+|++||+.......| +.+...+.. ...|..||+||... . +...+..+ .++.+.+++.++-..++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~G--l~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWG--IAIPLHPLTKEGLRSFL 280 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCC--eEEecCCCCHHHHHHHH
Confidence 45888999976432222 223333221 11355788888642 1 22223222 67899999999999999
Q ss_pred HHHHcCCCCCCChhhHHHHHHHHHhhcCCC
Q 002132 358 KRLAFFGPSINDCEKLEQIGRRIAGKFKGL 387 (961)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 387 (961)
.+++-..+. .- -+++..-|++.+.|.
T Consensus 281 ~~k~~~~~~-~l---~~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSI-RI---EETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCC-CC---CHHHHHHHHHhcCCC
Confidence 888743321 11 134555566666543
No 145
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00025 Score=76.34 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=68.8
Q ss_pred CceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhh-h-hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCC
Q 002132 288 GKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSV-A-SMMGSTDTDIITVMELTEEECWSLFKRLAFFGP 365 (961)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~-~-~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 365 (961)
+++-++|+|+++..+......+...+.....++.+|+||.+... . ...+.. ..+.+.+++.+++.+.+.... +..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc--~~~~~~~~~~~~~~~~L~~~~-~~~ 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRC--QQQACPLPSNEESLQWLQQAL-PES 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhc--eeeeCCCcCHHHHHHHHHHhc-ccC
Confidence 44455678999998888888899988887677888888877642 2 222222 679999999999999987653 111
Q ss_pred CCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 366 SINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 366 ~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
..+.+..++..++|.|..+..+
T Consensus 182 -------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -------ChHHHHHHHHHcCCCHHHHHHH
Confidence 1233567788999999765544
No 146
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.86 E-value=0.00028 Score=74.26 Aligned_cols=163 Identities=13% Similarity=0.060 Sum_probs=81.6
Q ss_pred ceecccchHHHHHHHHhcC---------CcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccH
Q 002132 184 EICGRVGERNELLSKLLCE---------SSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQ 254 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~---------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 254 (961)
.++|.+..++++.+..... .-...+....+.++|++|+||||+|+.+++.......-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 4788877776665432111 000123456788999999999999999987431111111112333322
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCc--------cChhhhHHhhhCCCCCcEEEEEc
Q 002132 255 FRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDC--------IKWEPFYLCLKNGLHGSKILVTT 326 (961)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--------~~~~~l~~~l~~~~~gs~iivTt 326 (961)
.++.. ..-+ .........+.+. . .-+|++|+++.... ...+.+...+........+|+++
T Consensus 83 ~~l~~----~~~g-----~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLVG----EYIG-----HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhhh----hhcc-----chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 11111 1100 0011222222222 2 24899999975321 12233444443333334555665
Q ss_pred cchhhhh------hhccCCcceEEcCCCCHHHHHHHHHHHHc
Q 002132 327 RKKSVAS------MMGSTDTDIITVMELTEEECWSLFKRLAF 362 (961)
Q Consensus 327 R~~~~~~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 362 (961)
....... .....-...+.+++++.++-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4432211 11111124689999999999999988764
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.0004 Score=80.28 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=113.4
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++..--...... ..+....+- +.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 468999999999999887432 3456889999999999999999885311110000 000000000 1111
Q ss_pred HHcCC-----CCCCCCCHHHHHHHH---HH-HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccc-hhhh
Q 002132 263 EALGI-----PSSNLGEFQSLLKLI---SE-SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRK-KSVA 332 (961)
Q Consensus 263 ~~l~~-----~~~~~~~~~~l~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~-~~~~ 332 (961)
..-.. ........+++.... .. -..+++-++|+|+++..+...++.+...+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 10000 000011223322222 11 12456668999999887766778888888776666677666543 3333
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
..+.. ....++..+++.++..+.+.+.+...+.. -..+.+..|++.++|.+..+..
T Consensus 164 ~tI~S-Rc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKS-RCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHH-hceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 22211 12678999999999998888776433221 1245677889999998854443
No 148
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.0009 Score=76.62 Aligned_cols=160 Identities=12% Similarity=0.058 Sum_probs=93.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
..+.|+|..|+|||.|++.+++.......-..+++++. .++..++...+... ..+ .+++.+++ -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~----~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGD----SFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHH----HHHHHhhc-C
Confidence 45899999999999999999995321111234566643 33444444443211 112 22233332 3
Q ss_pred EEEEEeCCCCCCcc-Chhh-hHHhhhCC-CCCcEEEEEccch---------hhhhhhccCCcceEEcCCCCHHHHHHHHH
Q 002132 291 FLLVLDDVWDGDCI-KWEP-FYLCLKNG-LHGSKILVTTRKK---------SVASMMGSTDTDIITVMELTEEECWSLFK 358 (961)
Q Consensus 291 ~LlVlDdv~~~~~~-~~~~-l~~~l~~~-~~gs~iivTtR~~---------~~~~~~~~~~~~~~~l~~L~~~~~~~lf~ 358 (961)
=+|||||+...... .|.. +...+... ..+..|||||+.. .+...+... -++.+.+.+.+.-.++++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G--Lvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG--LITDVQPPELETRIAILR 456 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC--ceEEcCCCCHHHHHHHHH
Confidence 47899999765322 2322 33333221 2355688888753 133333334 689999999999999999
Q ss_pred HHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHH
Q 002132 359 RLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAK 392 (961)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 392 (961)
+++....-.- -.++++-|++.+.+..-.+.
T Consensus 457 kka~~r~l~l----~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 457 KKAVQEQLNA----PPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHhcCCCC----CHHHHHHHHHhccCCHHHHH
Confidence 8875432211 24566777777766544333
No 149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.84 E-value=0.00071 Score=77.26 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=95.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcC--CeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKF--DKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
...+.|+|..|+|||+|++.+++.. ...+ ..+++++.. ++..++...+... ..+. +.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI--LEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TMEE----FKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHHh
Confidence 3568999999999999999999953 3333 235566443 3344444444211 1222 233333
Q ss_pred CceEEEEEeCCCCCCccC-h-hhhHHhhhC-CCCCcEEEEEccchh---------hhhhhccCCcceEEcCCCCHHHHHH
Q 002132 288 GKRFLLVLDDVWDGDCIK-W-EPFYLCLKN-GLHGSKILVTTRKKS---------VASMMGSTDTDIITVMELTEEECWS 355 (961)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~~~l~~L~~~~~~~ 355 (961)
+.-+|||||++...... + +.+...+.. ...|..||+||.... +...+... .++++++.+.++-.+
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g--l~v~i~~pd~~~r~~ 287 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG--LTVDIEPPDLETRIA 287 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC--eeEEecCCCHHHHHH
Confidence 24489999997542211 1 233332221 113445888876542 12223222 579999999999999
Q ss_pred HHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 356 LFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 356 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
++++.+...+. .--+++...|++.+.|..-.+..
T Consensus 288 il~~~~~~~~~----~l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 288 ILKKKAEEEGI----DLPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred HHHHHHHHcCC----CCCHHHHHHHHcCcCCCHHHHHH
Confidence 99998753221 12245788899999887765443
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.84 E-value=0.00016 Score=87.40 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=86.9
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh---cC-CeEEEEEeCCcccHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR---KF-DKLLWVCVSDPFEQFRVA 258 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~f-~~~~wv~~s~~~~~~~~~ 258 (961)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++...... .+ +..+|. + +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh
Confidence 368999999999999887543 23457999999999999999988531111 11 233332 1 111111
Q ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCCCC---------ccChhhhHHhhhCCCCCcEEEEEccc
Q 002132 259 KAIAEALGIPSSNLGEFQSLLKLISESI-TGKRFLLVLDDVWDGD---------CIKWEPFYLCLKNGLHGSKILVTTRK 328 (961)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~iivTtR~ 328 (961)
.. . .-..+.++..+.+.+.+ +.++.+|++|+++... .+.-+.+...+..+ .-++|-+|..
T Consensus 251 ----a~---~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~ 320 (731)
T TIGR02639 251 ----AG---T-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTY 320 (731)
T ss_pred ----hh---c-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCH
Confidence 00 0 00112233333333333 3457899999996421 01112233333321 2345555544
Q ss_pred hhhhhh------hccCCcceEEcCCCCHHHHHHHHHHHH
Q 002132 329 KSVASM------MGSTDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 329 ~~~~~~------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
.+.... ... ....+++++++.++..++++...
T Consensus 321 ~e~~~~~~~d~al~r-Rf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSR-RFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHH-hCceEEeCCCCHHHHHHHHHHHH
Confidence 322111 111 12679999999999999998654
No 151
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00029 Score=82.23 Aligned_cols=195 Identities=13% Similarity=0.138 Sum_probs=110.1
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|.+...+.|...+.... -...+.++|+.|+||||+|+.+++..--....+ ..++..-...++|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 478999988899988886432 235678999999999999999887431000000 00000001111111
Q ss_pred HH-------cCCC-CCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEc-cchhhh
Q 002132 263 EA-------LGIP-SSNLGEFQSLLKLISES-ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTT-RKKSVA 332 (961)
Q Consensus 263 ~~-------l~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~~~ 332 (961)
.. +... .....++.++...+... ..+++-++|+|+++..+....+.+...+......+.+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000 00011122222222111 23456689999998877667788888887765566666555 444443
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch-hHHHH
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL-AAKTI 394 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~ 394 (961)
..+... ...+++.+++.++....+...+-..+.. -..+....|++.++|..- |+..+
T Consensus 164 ~tI~SR-c~~~~f~~l~~~~i~~~L~~i~~~egi~----i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSR-CQRFDFRRIPLQKIVDRLRYIADQEGIS----ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHh-hhhhhcCCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 322211 2678999999999988887655322211 113457788999998664 44444
No 152
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.80 E-value=0.00042 Score=73.47 Aligned_cols=135 Identities=15% Similarity=0.087 Sum_probs=74.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceE
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRF 291 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~ 291 (961)
-+.++|++|+||||+|+.+++...........-|+.++. .+ ++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 478999999999999988877432111111112444442 12 222222211 11222223322 235
Q ss_pred EEEEeCCCCC---------CccChhhhHHhhhCCCCCcEEEEEccchhhhhhhcc------CCcceEEcCCCCHHHHHHH
Q 002132 292 LLVLDDVWDG---------DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMMGS------TDTDIITVMELTEEECWSL 356 (961)
Q Consensus 292 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~~~------~~~~~~~l~~L~~~~~~~l 356 (961)
+|+||++... ....+..+...+.....+.+||+++........... .-...+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 111234455556555556677777654322211111 1125699999999999999
Q ss_pred HHHHHc
Q 002132 357 FKRLAF 362 (961)
Q Consensus 357 f~~~~~ 362 (961)
+.+.+-
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 988763
No 153
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=8.2e-05 Score=80.47 Aligned_cols=64 Identities=23% Similarity=0.322 Sum_probs=36.8
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecC-CcccccchhhhccCCCcEEeecCcccccccch
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSC-QNIRKLPETLCELYNLEKLYITRCLYLEELPE 670 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~-~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~ 670 (961)
+..+..++.|++++|. +..+|. -..+|+.|.+++ +.++.+|..+ ..+|+.|++++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c~------L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD------IESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCC------CcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 3446777777777775 556652 122466666664 3355666544 24666666666644555554
No 154
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00075 Score=78.41 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=109.9
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|.+...+.+..++.... -...+.++|+.|+||||+|+.+++...-...-+ ..++..-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 478999999999999887532 345677899999999999998876421000000 00111111111111
Q ss_pred HHcCC-----CCCCCCCHHHHHHHHHH----HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEc-cchhhh
Q 002132 263 EALGI-----PSSNLGEFQSLLKLISE----SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTT-RKKSVA 332 (961)
Q Consensus 263 ~~l~~-----~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt-R~~~~~ 332 (961)
..... ........+++...+.. -..++.-++|+|+++......+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 11000 00011122222222111 124567788999998876667778888777655555555554 433332
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHH
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAK 392 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 392 (961)
..+.. ....+...+++.++....+...+-..+-. -..+.+..|++.++|.+..+.
T Consensus 164 ~tI~S-Rc~~~~f~~~~~~ei~~~L~~i~~~egi~----i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILS-RCQRFDFKRISVEDIVERLKYILDKEGIE----YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHh-HheEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 22211 12678899999999988888766432211 113557788889988776443
No 155
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.6e-05 Score=55.84 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=35.4
Q ss_pred CceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccch
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPE 646 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~ 646 (961)
++|++|++++|. +..+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N~------i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ------ITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-------SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCC------CcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 479999999998 89999889999999999999999987754
No 156
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.74 E-value=0.00019 Score=79.75 Aligned_cols=180 Identities=16% Similarity=0.064 Sum_probs=97.3
Q ss_pred CCceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccH
Q 002132 182 EEEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQ 254 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 254 (961)
..++.|++..++++.+.+...-.. +-...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh----
Confidence 457899999999998876421110 01234568899999999999999999842 222 233221
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCCCC-----------ccChhhhHHhhhC-----CC
Q 002132 255 FRVAKAIAEALGIPSSNLGEFQSLLKLISES-ITGKRFLLVLDDVWDGD-----------CIKWEPFYLCLKN-----GL 317 (961)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~-----~~ 317 (961)
.++ .....+ +.....+.+.+. -.....+|+|||++... ......+...+.. ..
T Consensus 199 ~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SEL----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHH----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 111110 111222222222 23457899999996531 0111223333321 12
Q ss_pred CCcEEEEEccchhhhhh-hc-c-CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCC
Q 002132 318 HGSKILVTTRKKSVASM-MG-S-TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGL 387 (961)
Q Consensus 318 ~gs~iivTtR~~~~~~~-~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 387 (961)
.+..||.||........ +- . .-...+++++.+.++..++|+.+..+-.- ..... ...+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 35677777776542221 11 0 01256899999999999999887643221 11112 34566666664
No 157
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.0014 Score=65.16 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=109.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeC-CcccHHHHHHHHHHHcCCCCCCC--CCHHHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVS-DPFEQFRVAKAIAEALGIPSSNL--GEFQSLLKLISES 285 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~--~~~~~l~~~l~~~ 285 (961)
+.+++.|+|.-|.|||.+++...... . =+.++=|.++ +..+...+...|+..+....... ...++..+.+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~--~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASL--N--EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhc--C--CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 45799999999999999999443321 1 1222224443 34667788888888887732111 1223333444433
Q ss_pred h-CCce-EEEEEeCCCCCCccChhhhHHhhhCCCCCc---EEEEEccc--------hhhhhhhccCCcce-EEcCCCCHH
Q 002132 286 I-TGKR-FLLVLDDVWDGDCIKWEPFYLCLKNGLHGS---KILVTTRK--------KSVASMMGSTDTDI-ITVMELTEE 351 (961)
Q Consensus 286 l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs---~iivTtR~--------~~~~~~~~~~~~~~-~~l~~L~~~ 351 (961)
. +++| ..+++||..+......+.++-...-...++ +|+..-.. ......-.. ... |++.|++.+
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R--~~ir~~l~P~~~~ 203 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQR--IDIRIELPPLTEA 203 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhhe--EEEEEecCCcChH
Confidence 3 4777 999999998876666666554433222222 23332221 111111111 134 999999999
Q ss_pred HHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHH
Q 002132 352 ECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGS 396 (961)
Q Consensus 352 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~ 396 (961)
+...+++.+..+...+. +--..+....|..+..|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~-~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPE-PLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCc-ccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999988876553322 212245567889999999999988765
No 158
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.71 E-value=0.0003 Score=86.14 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=87.3
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh---c-CCeEEEEEeCCcccHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR---K-FDKLLWVCVSDPFEQFRVA 258 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~s~~~~~~~~~ 258 (961)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++....... . -+..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999997543 23456999999999999999988531110 0 1234442 1 111111
Q ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCCCC-------ccChhh-hHHhhhCCCCCcEEEEEccch
Q 002132 259 KAIAEALGIPSSNLGEFQSLLKLISE-SITGKRFLLVLDDVWDGD-------CIKWEP-FYLCLKNGLHGSKILVTTRKK 329 (961)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~-------~~~~~~-l~~~l~~~~~gs~iivTtR~~ 329 (961)
.+... ..+.++....+.+ .-..++.+|++|+++..- ..+... +...+..+ .-++|.+|...
T Consensus 248 -------ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~l~~IgaTt~~ 317 (821)
T CHL00095 248 -------AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--ELQCIGATTLD 317 (821)
T ss_pred -------ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--CcEEEEeCCHH
Confidence 11111 1223333333333 223568999999995310 111222 23233222 24566666655
Q ss_pred hhhhhhcc-----CCcceEEcCCCCHHHHHHHHHHH
Q 002132 330 SVASMMGS-----TDTDIITVMELTEEECWSLFKRL 360 (961)
Q Consensus 330 ~~~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~ 360 (961)
+....... .....+.+...+.++...+++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 44322111 12356888999999988887653
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.68 E-value=0.00012 Score=68.19 Aligned_cols=97 Identities=19% Similarity=0.127 Sum_probs=53.7
Q ss_pred EEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC-ceE
Q 002132 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITG-KRF 291 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~-kr~ 291 (961)
|.|+|++|+||||+|+.++++. . ..++.++.+.-.+. ........+...+.+.-+. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~---~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--G---FPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--T---SEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--c---cccccccccccccc---------------cccccccccccccccccccccce
Confidence 5799999999999999999953 2 12344443331100 1111122233333333223 479
Q ss_pred EEEEeCCCCCCccC-----------hhhhHHhhhCCC---CCcEEEEEccch
Q 002132 292 LLVLDDVWDGDCIK-----------WEPFYLCLKNGL---HGSKILVTTRKK 329 (961)
Q Consensus 292 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtR~~ 329 (961)
+|++||++...... ...+...+.... .+..||.||...
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 99999997643322 344444454433 235666676653
No 160
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=2.6e-06 Score=94.87 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=44.2
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcc
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKL 675 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 675 (961)
+.-++.|+.|+|++|. +.+.- .+..|++|++|||+.|.+..+|.-=..--+|+.|.+++|. +..+- +|.+|
T Consensus 183 Lqll~ale~LnLshNk------~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~-gie~L 253 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNK------FTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTLR-GIENL 253 (1096)
T ss_pred HHHHHHhhhhccchhh------hhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhhh-hHHhh
Confidence 4445556666666665 44332 4555666666666666666555421111226666666655 44443 35666
Q ss_pred cCCceeecCCc
Q 002132 676 INMKHLLNYRT 686 (961)
Q Consensus 676 ~~L~~L~l~~~ 686 (961)
.+|++||+++|
T Consensus 254 ksL~~LDlsyN 264 (1096)
T KOG1859|consen 254 KSLYGLDLSYN 264 (1096)
T ss_pred hhhhccchhHh
Confidence 66666666655
No 161
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=3.4e-05 Score=90.88 Aligned_cols=129 Identities=21% Similarity=0.167 Sum_probs=92.0
Q ss_pred cceeEEEEEeccccc---cccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCc
Q 002132 547 EKVRHLMLIIGREAS---FRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPR 623 (961)
Q Consensus 547 ~~~r~lsl~~~~~~~---~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~ 623 (961)
.+++||.+.+...-. .......+|.|++|.+.+-.... ......+.+|++|+.||++++. +..+ .
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-----~dF~~lc~sFpNL~sLDIS~Tn------I~nl-~ 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-----DDFSQLCASFPNLRSLDISGTN------ISNL-S 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-----hhHHHHhhccCccceeecCCCC------ccCc-H
Confidence 355666665533221 11233568999999998865332 2255668899999999999998 7766 7
Q ss_pred cccccCccceEEecCCccccc--chhhhccCCCcEEeecCcccccccchh-------hhcccCCceeecCCccc
Q 002132 624 NIEKLVHLRYLNLSCQNIRKL--PETLCELYNLEKLYITRCLYLEELPEG-------IGKLINMKHLLNYRTDS 688 (961)
Q Consensus 624 ~i~~L~~Lr~L~L~~~~i~~L--p~~i~~L~~L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~~ 688 (961)
.+++|++|+.|.+++=.+..- -..+.+|.+|++||+|..... ..+.. -..||+||.||++++..
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence 899999999999998776632 245789999999999987632 22211 12489999999998854
No 162
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.61 E-value=0.0022 Score=78.15 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=86.3
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|.+..++++.+++.........+.+++.++|++|+|||++|+.+++. ....| .-++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe---EEEeCCCcccHHHHcCC--
Confidence 458899999999988765321100123458999999999999999999984 33333 22233332233222110
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccC----hhhhHHhhhC--------C-------CCCcEEE
Q 002132 263 EALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIK----WEPFYLCLKN--------G-------LHGSKIL 323 (961)
Q Consensus 263 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~--------~-------~~gs~ii 323 (961)
...........+.+.+... ..++-+|+||+++...... ...+...+.. . ....-+|
T Consensus 393 ----~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ----RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ----CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0000011112233333333 2334588999997653211 1223322211 0 0223344
Q ss_pred EEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHHH
Q 002132 324 VTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 324 vTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
.||.... +...+.. ...++++.+++.++-.+++++..
T Consensus 468 ~TtN~~~~i~~~L~~-R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLD-RMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhC-CeeEEecCCCCHHHHHHHHHHHH
Confidence 4554332 1111111 12578999999998888887654
No 163
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0017 Score=69.30 Aligned_cols=176 Identities=7% Similarity=0.007 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCC------e--EEEEEeCCcccHHHHHHHHHH
Q 002132 192 RNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFD------K--LLWVCVSDPFEQFRVAKAIAE 263 (961)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~------~--~~wv~~s~~~~~~~~~~~i~~ 263 (961)
-+.+...+.... -...+.+.|+.|+||+++|+.++...-=..... | .-++..+..+|+..+
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 344555554321 235677999999999999998876431000000 0 000001111111100
Q ss_pred HcCCCCCCCCCHHHHHHHHHH----HhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hh-hhhcc
Q 002132 264 ALGIPSSNLGEFQSLLKLISE----SITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VA-SMMGS 337 (961)
Q Consensus 264 ~l~~~~~~~~~~~~l~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~-~~~~~ 337 (961)
.........+++..+.... -..+++=++|+|+++..+......+...+.....++.+|++|.+.. +. +..+.
T Consensus 80 --~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 80 --EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred --ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 0000011223333332221 1236667889999999888888899999988878888888877653 32 22222
Q ss_pred CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhH
Q 002132 338 TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAA 391 (961)
Q Consensus 338 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 391 (961)
. ..+.+.++++++..+.+..... .. ...+...+..++|.|..+
T Consensus 158 C--~~~~~~~~~~~~~~~~L~~~~~-----~~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 C--QTWLIHPPEEQQALDWLQAQSS-----AE----ISEILTALRINYGRPLLA 200 (325)
T ss_pred c--eEEeCCCCCHHHHHHHHHHHhc-----cC----hHHHHHHHHHcCCCHHHH
Confidence 2 7899999999999998887541 11 112556788899999644
No 164
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0012 Score=70.45 Aligned_cols=96 Identities=9% Similarity=0.076 Sum_probs=68.8
Q ss_pred CceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hh-hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCC
Q 002132 288 GKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VA-SMMGSTDTDIITVMELTEEECWSLFKRLAFFGP 365 (961)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~-~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 365 (961)
+++-++|+|+++..+...-..+...+.....++.+|++|.+.. +. +..+.. ..+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC--q~i~~~~~~~~~~~~~L~~~~---- 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC--QRLEFKLPPAHEALAWLLAQG---- 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh--eEeeCCCcCHHHHHHHHHHcC----
Confidence 5667999999998877777888888888777887877776543 22 222222 678999999999998887531
Q ss_pred CCCChhhHHHHHHHHHhhcCCCchhHHHHH
Q 002132 366 SINDCEKLEQIGRRIAGKFKGLPLAAKTIG 395 (961)
Q Consensus 366 ~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 395 (961)
.+ ...+..++..++|.|+.+..+.
T Consensus 186 --~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 --VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred --CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1236678999999998665443
No 165
>PRK08116 hypothetical protein; Validated
Probab=97.58 E-value=0.0004 Score=72.76 Aligned_cols=104 Identities=23% Similarity=0.260 Sum_probs=61.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
..+.++|..|+|||.||..+++.. ..+...++++++ .+++..+........ ...... +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEH------HHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 358899999999999999999964 333445666653 345556655543221 111112 223344333
Q ss_pred EEEEEeCCCCCCccChhh--hHHhhhCC-CCCcEEEEEccch
Q 002132 291 FLLVLDDVWDGDCIKWEP--FYLCLKNG-LHGSKILVTTRKK 329 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~~ 329 (961)
||||||+......+|.. +...+... ..+..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996544445544 33333321 2456799998754
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00063 Score=81.21 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=88.0
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhc-----CCeEEEEEeCCcccHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRK-----FDKLLWVCVSDPFEQFRV 257 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~~~~~~~~ 257 (961)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|+.++... +... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHHH
Confidence 358999999999999998643 1334689999999999999998743 1111 13444421 11111
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCCC--------CccChhhhHHhhhCCCCCcEEEEEccc
Q 002132 258 AKAIAEALGIPSSNLGEFQSLLKLISESI-TGKRFLLVLDDVWDG--------DCIKWEPFYLCLKNGLHGSKILVTTRK 328 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~iivTtR~ 328 (961)
+ .+. .-..+.+...+.+.+.+ +..+.+|++|+++.. ...+...+..++...+ .-++|-+|..
T Consensus 254 ----l---aG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~ 324 (758)
T PRK11034 254 ----L---AGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTY 324 (758)
T ss_pred ----h---ccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCCh
Confidence 1 010 01112222222232323 345789999999642 1112222333332222 3455555554
Q ss_pred hhhhhhhcc-----CCcceEEcCCCCHHHHHHHHHHHH
Q 002132 329 KSVASMMGS-----TDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 329 ~~~~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
.+....+.. .....+.+++.+.+++.++++...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 443221111 123679999999999999998653
No 167
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.57 E-value=0.00088 Score=64.94 Aligned_cols=104 Identities=16% Similarity=0.106 Sum_probs=63.9
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
-.++||-++.++++.-... ++..+-+.|.||+|+||||-+..+++..--...-+.+.-.++|+
T Consensus 26 l~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd----------- 88 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD----------- 88 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc-----------
Confidence 3579999999888876665 34667889999999999999988887431111223333333333
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHh-------CCceEEEEEeCCCCCCccChhhhHHh
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESI-------TGKRFLLVLDDVWDGDCIKWEPFYLC 312 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l-------~~kr~LlVlDdv~~~~~~~~~~l~~~ 312 (961)
....+.....++.+- .++.-++|||.+++.....-..++..
T Consensus 89 ----------eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRt 136 (333)
T KOG0991|consen 89 ----------ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRT 136 (333)
T ss_pred ----------ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHH
Confidence 233334444444332 25566899999987654333334433
No 168
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0021 Score=72.99 Aligned_cols=167 Identities=17% Similarity=0.211 Sum_probs=94.2
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
-+.+.+|-++.+++|+++|.-..-...-+-+++++||++|||||+|++.+++ ...+.| +-+.++.-.|..+|-..
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIRGH 395 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhccc
Confidence 3457899999999999998643211133458999999999999999999998 445555 22344443333322110
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCcc----ChhhhHHhhhC-------------CCCCcEEE
Q 002132 261 IAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCI----KWEPFYLCLKN-------------GLHGSKIL 323 (961)
Q Consensus 261 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~-------------~~~gs~ii 323 (961)
....-+.. ...+.+.+++ .+.++-+++||.++....+ .-..++..|.+ .--=|.|+
T Consensus 396 -----RRTYIGam-PGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 -----RRTYIGAM-PGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred -----cccccccC-ChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 00000111 1122222322 2456889999999653211 11122222211 01124444
Q ss_pred -EEccch-h--hhhhhccCCcceEEcCCCCHHHHHHHHHHHH
Q 002132 324 -VTTRKK-S--VASMMGSTDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 324 -vTtR~~-~--~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
|||-+. . -+..+... .++++.+.+++|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRM--EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRM--EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcce--eeeeecCCChHHHHHHHHHhc
Confidence 444432 1 12223333 789999999999998887765
No 169
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0021 Score=68.50 Aligned_cols=164 Identities=10% Similarity=0.058 Sum_probs=102.6
Q ss_pred HHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhh-------------------HhcCCeEEEEEeCCcc
Q 002132 192 RNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV-------------------KRKFDKLLWVCVSDPF 252 (961)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~f~~~~wv~~s~~~ 252 (961)
.+++...+... .-...+.+.|+.|+||+++|+.++...-= ..|.| ..|+.-..
T Consensus 12 ~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~-- 83 (319)
T PRK06090 12 WQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEK-- 83 (319)
T ss_pred HHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCc--
Confidence 44555555432 23457889999999999999988764210 01112 11111000
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh-----CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEcc
Q 002132 253 EQFRVAKAIAEALGIPSSNLGEFQSLLKLISESI-----TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTR 327 (961)
Q Consensus 253 ~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 327 (961)
....-.++++.+ +.+.+ .+.+=++|+|+++..+......+...+.....++.+|++|.
T Consensus 84 ----------------~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 84 ----------------EGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred ----------------CCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 001122334332 22222 34566899999999888888999999988777888877777
Q ss_pred chh-h-hhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 328 KKS-V-ASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 328 ~~~-~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
+.+ + .+..+.. ..+.+.+++.+++.+.+.... . . .+..++..++|.|+.+..+
T Consensus 147 ~~~~lLpTI~SRC--q~~~~~~~~~~~~~~~L~~~~----~-~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 147 NQKRLLPTIVSRC--QQWVVTPPSTAQAMQWLKGQG----I-T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChhhChHHHHhcc--eeEeCCCCCHHHHHHHHHHcC----C-c-------hHHHHHHHcCCCHHHHHHH
Confidence 654 3 3333333 789999999999999886531 1 1 1346788999999876554
No 170
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=0.0003 Score=76.26 Aligned_cols=32 Identities=22% Similarity=0.626 Sum_probs=20.2
Q ss_pred cccceecccccccCcCCCCCCCCCCCccEEEEccc
Q 002132 903 PRLSSLTIARCPKLKALPDHIHQTTTLKELRIWAC 937 (961)
Q Consensus 903 p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~ 937 (961)
++|+.|.+.+|..+ .+|..+- .+|+.|.++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 56888888877644 3454322 57777777654
No 171
>PRK10536 hypothetical protein; Provisional
Probab=97.54 E-value=0.0012 Score=67.00 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=76.4
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC----------c
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD----------P 251 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~----------~ 251 (961)
...+.+|......++.++.. ..++.+.|.+|.|||+||..+..+.-..+.|+.++ +.-+. +
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi-I~RP~v~~ge~LGfLP 124 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII-VTRPVLQADEDLGFLP 124 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE-EeCCCCCchhhhCcCC
Confidence 34577888999999998862 24899999999999999999887532234444333 32111 0
Q ss_pred ccHHH----HHHHHHHHcCCCCCCCCCHHHHHH----H----HHHHhCCceE---EEEEeCCCCCCccChhhhHHhhhCC
Q 002132 252 FEQFR----VAKAIAEALGIPSSNLGEFQSLLK----L----ISESITGKRF---LLVLDDVWDGDCIKWEPFYLCLKNG 316 (961)
Q Consensus 252 ~~~~~----~~~~i~~~l~~~~~~~~~~~~l~~----~----l~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (961)
-+.++ .++-+.+.+..-. +....+.+.. . =..+++|+.+ +||+|++...+. ..+...+...
T Consensus 125 G~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~ 200 (262)
T PRK10536 125 GDIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA---AQMKMFLTRL 200 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH---HHHHHHHhhc
Confidence 01111 1122222221100 0001111100 0 0135667654 999999988754 4455555556
Q ss_pred CCCcEEEEEccch
Q 002132 317 LHGSKILVTTRKK 329 (961)
Q Consensus 317 ~~gs~iivTtR~~ 329 (961)
+.+|++|+|--..
T Consensus 201 g~~sk~v~~GD~~ 213 (262)
T PRK10536 201 GENVTVIVNGDIT 213 (262)
T ss_pred CCCCEEEEeCChh
Confidence 6899999987554
No 172
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.50 E-value=0.0014 Score=63.04 Aligned_cols=139 Identities=15% Similarity=0.171 Sum_probs=79.2
Q ss_pred cccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh------------------cCCeEEEEEe
Q 002132 187 GRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR------------------KFDKLLWVCV 248 (961)
Q Consensus 187 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~f~~~~wv~~ 248 (961)
|-+...+.+...+.... -...+.++|..|+||+++|..+++..--.. ...-+.|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 44556666766665322 234678999999999999998877431111 1112333332
Q ss_pred CCc---ccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEE
Q 002132 249 SDP---FEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVT 325 (961)
Q Consensus 249 s~~---~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 325 (961)
... ..++++ +++.+.+.... ..++.=++|+||++......+..++..+......+++|++
T Consensus 76 ~~~~~~i~i~~i-r~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQI-REIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHH-HHHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHH-HHHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 222222 13333332221 1245668999999998888899999999988889999998
Q ss_pred ccchh-h-hhhhccCCcceEEcCCCC
Q 002132 326 TRKKS-V-ASMMGSTDTDIITVMELT 349 (961)
Q Consensus 326 tR~~~-~-~~~~~~~~~~~~~l~~L~ 349 (961)
|++.. + ....... ..+.+.++|
T Consensus 139 t~~~~~il~TI~SRc--~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRC--QVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTS--EEEEE----
T ss_pred ECChHHChHHHHhhc--eEEecCCCC
Confidence 88765 2 2222222 567777664
No 173
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.48 E-value=0.0023 Score=72.46 Aligned_cols=167 Identities=13% Similarity=0.147 Sum_probs=89.0
Q ss_pred CceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhc-----CCeEEEEEeCC
Q 002132 183 EEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRK-----FDKLLWVCVSD 250 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~s~ 250 (961)
.++.|.+..++++.+.+..+-.. .-...+-+.++|++|+|||++|+.+++.. ... .....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL--~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL--AQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh--ccccccccCCceeEEeccc
Confidence 45788999998888876421100 01123458899999999999999999953 222 12344554443
Q ss_pred cccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCCCC-------ccCh-----hhhHHhhhCC-
Q 002132 251 PFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISES-ITGKRFLLVLDDVWDGD-------CIKW-----EPFYLCLKNG- 316 (961)
Q Consensus 251 ~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~~-----~~l~~~l~~~- 316 (961)
. ++ +....+. ....+..+....+.. -.+++++|+||+++..- ..+. ..+...+...
T Consensus 260 ~----eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 260 P----EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred h----hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 11 1111000 000111222222222 23578999999997421 0111 1232222221
Q ss_pred -CCCcEEEEEccchhhhh-hh-ccCC-cceEEcCCCCHHHHHHHHHHHH
Q 002132 317 -LHGSKILVTTRKKSVAS-MM-GSTD-TDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 317 -~~gs~iivTtR~~~~~~-~~-~~~~-~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
..+..||.||....... .+ .... ...+++...+.++..++|+.+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13445556665543222 11 1111 2468999999999999999876
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.47 E-value=0.00052 Score=64.68 Aligned_cols=88 Identities=23% Similarity=0.176 Sum_probs=48.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc-
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK- 289 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k- 289 (961)
..+.|+|++|+||||+|+.++... ......++++..+........... ......... ..........+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKA-SGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH-hhhhhccCC-CCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999853 222224666665544332222211 111111111 122222233344444433
Q ss_pred eEEEEEeCCCCCC
Q 002132 290 RFLLVLDDVWDGD 302 (961)
Q Consensus 290 r~LlVlDdv~~~~ 302 (961)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999998764
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.47 E-value=0.00066 Score=78.87 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=41.4
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...+++|-++.++++..++....-. ....+++.|+|++|+||||+++.++...
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4467999999999999988754321 1234679999999999999999999853
No 176
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.44 E-value=0.0012 Score=81.24 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=84.9
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhc------CCeEEE-EEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRK------FDKLLW-VCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~s~~~~~~ 255 (961)
..++||+.++.++++.|.... ..-+.++|++|+|||++|+.++... ... ....+| +.++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i--~~~~~p~~l~~~~~~~l~~~------ 238 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRI--VNGDVPESLKNKRLLALDMG------ 238 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHH--hccCCchhhcCCeEEEeeHH------
Confidence 359999999999999997543 2345689999999999999988843 221 122333 2211
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh-C-CceEEEEEeCCCCCCc-------cChhhhHHhhhCCCCCcEEEEEc
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESI-T-GKRFLLVLDDVWDGDC-------IKWEPFYLCLKNGLHGSKILVTT 326 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~-~kr~LlVlDdv~~~~~-------~~~~~l~~~l~~~~~gs~iivTt 326 (961)
.++ . .. .-..+.+.....+.+.+ + +++.+|++|+++.... .+...+..+....+ .-++|-+|
T Consensus 239 ~l~----a---~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaT 309 (852)
T TIGR03346 239 ALI----A---GA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGAT 309 (852)
T ss_pred HHh----h---cc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeC
Confidence 111 0 00 00112222222222222 2 4689999999974310 01112221211111 23555555
Q ss_pred cchhhhhhhcc-----CCcceEEcCCCCHHHHHHHHHHHH
Q 002132 327 RKKSVASMMGS-----TDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 327 R~~~~~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
...+....+.. .....+.+...+.++..+++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 54443221110 122568899999999999887653
No 177
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.44 E-value=0.0015 Score=78.65 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=90.3
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
+.+++|.++.+++|+++|............++.++|++|+||||+|+.++.. ....| +-+.++...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 4468999999999998887322111224468999999999999999999973 22233 223344433332221111
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccC----hhhhHHhhhCC--------------C-CCcEE
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIK----WEPFYLCLKNG--------------L-HGSKI 322 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~--------------~-~gs~i 322 (961)
.... +.. ...+...+... ...+-+++||+++...... ...+...+... . ...-+
T Consensus 396 -~~~~----g~~-~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTYI----GSM-PGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hccC----CCC-CcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 0010 011 11233333332 2234578999997653221 23444444321 1 22333
Q ss_pred EEEccchhhhhhhccCCcceEEcCCCCHHHHHHHHHHHH
Q 002132 323 LVTTRKKSVASMMGSTDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 323 ivTtR~~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
|.|+....+...+-. ...++.+.+++.++-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~-R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLD-RMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhc-ceeeeecCCCCHHHHHHHHHHhh
Confidence 444443322221111 12578999999999988887765
No 178
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0016 Score=70.66 Aligned_cols=163 Identities=12% Similarity=0.059 Sum_probs=91.6
Q ss_pred eec-ccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHH
Q 002132 185 ICG-RVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAE 263 (961)
Q Consensus 185 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 263 (961)
++| -+..++.+...+.... -.....++|+.|+||||+|+.+.+..--....... .+... ...+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHhc
Confidence 455 5556667777765322 34567899999999999999887642100100000 00000 00000000
Q ss_pred HcCC------CCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hh
Q 002132 264 ALGI------PSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VA 332 (961)
Q Consensus 264 ~l~~------~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~ 332 (961)
.-.. .......++++.+.+... ..+.+=++|+|+++..+....+.+...+......+.+|++|.+.. +.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 0000 000112233333332221 235566899999988777677888888888777888887776543 22
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHH
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRL 360 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 360 (961)
..+.. ....+++.+++.++..+.+...
T Consensus 155 ~TIrS-Rc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTILS-RCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHHh-hceeeeCCCCCHHHHHHHHHHc
Confidence 22211 1278999999999998888653
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.41 E-value=0.0017 Score=79.66 Aligned_cols=157 Identities=15% Similarity=0.176 Sum_probs=84.2
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh---c-CCe-EEEEEeCCcccHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR---K-FDK-LLWVCVSDPFEQFRV 257 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~-~~wv~~s~~~~~~~~ 257 (961)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|+.++....... . ... ++++.++. +
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h
Confidence 459999999999999997543 23466999999999999999988431100 0 122 23332222 1
Q ss_pred HHHHHHHcCCCCCCCCCHHH-HHHHHHHHh-CCceEEEEEeCCCCCCcc-------Chhh-hHHhhhCCCCCcEEEEEcc
Q 002132 258 AKAIAEALGIPSSNLGEFQS-LLKLISESI-TGKRFLLVLDDVWDGDCI-------KWEP-FYLCLKNGLHGSKILVTTR 327 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~-l~~~l~~~l-~~kr~LlVlDdv~~~~~~-------~~~~-l~~~l~~~~~gs~iivTtR 327 (961)
+. +. ....+.+. +...+.+.- .+++.+|++|+++..... +-.. +...+..+ .-++|-||.
T Consensus 246 ~a-------g~-~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~l~~IgaTt 315 (857)
T PRK10865 246 VA-------GA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATT 315 (857)
T ss_pred hh-------cc-chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--CCeEEEcCC
Confidence 10 00 00112222 222222221 256899999999653100 1122 22222221 345666665
Q ss_pred chhhhhhhcc-----CCcceEEcCCCCHHHHHHHHHHHH
Q 002132 328 KKSVASMMGS-----TDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 328 ~~~~~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
..+....+.. .....+.+..-+.++..++++...
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5543221110 112456677778899988886543
No 180
>PRK08181 transposase; Validated
Probab=97.38 E-value=0.00059 Score=70.97 Aligned_cols=101 Identities=19% Similarity=0.150 Sum_probs=57.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
.-+.++|++|+|||.||..+.+.. ......++|+.+ .+++..+..... ....+...+ . + .+-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~---~-l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIA---K-L-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHH---H-H-hcC
Confidence 458999999999999999999843 333445666653 345555543321 112222222 2 2 234
Q ss_pred EEEEEeCCCCCCccChh--hhHHhhhCCCCCcEEEEEccch
Q 002132 291 FLLVLDDVWDGDCIKWE--PFYLCLKNGLHGSKILVTTRKK 329 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtR~~ 329 (961)
-|||+||+.......|. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 59999999755433332 2444443322223588888764
No 181
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.36 E-value=0.0011 Score=67.80 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=59.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
...+.++|.+|+|||+||..+++.. ...-..++++++ .+++..+-..... .....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 3578999999999999999999964 333345666643 4455544443321 1111222 223344 3
Q ss_pred eEEEEEeCCCCCCccChhh--hHHhhhCC-CCCcEEEEEccc
Q 002132 290 RFLLVLDDVWDGDCIKWEP--FYLCLKNG-LHGSKILVTTRK 328 (961)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 328 (961)
.=+||+||+......+|.. +...+... ...-.+||||..
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488999997765566664 33333221 123347777764
No 182
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.34 E-value=0.00089 Score=71.36 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=73.0
Q ss_pred cccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcC
Q 002132 187 GRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALG 266 (961)
Q Consensus 187 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (961)
+|....+...+++..-.. ....+-+.++|..|+|||.||..+++.. ...-..+.+++++ +++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 455555555666653221 1134568999999999999999999964 3333446677654 45555555442
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhh--hHHhh-hCC-CCCcEEEEEccc
Q 002132 267 IPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEP--FYLCL-KNG-LHGSKILVTTRK 328 (961)
Q Consensus 267 ~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtR~ 328 (961)
. .... +.+.. + .+-=||||||+..+...+|.. +...+ ... ..+-.+|+||..
T Consensus 205 ~-----~~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 1122 22222 2 345699999998776667864 44444 322 244568888864
No 183
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.33 E-value=0.01 Score=64.40 Aligned_cols=205 Identities=15% Similarity=0.098 Sum_probs=124.5
Q ss_pred ccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHH-HHHhcchhhHhcCCeEEEEEeCCc---ccHHHHHHHHHH
Q 002132 188 RVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLA-QLACNHVEVKRKFDKLLWVCVSDP---FEQFRVAKAIAE 263 (961)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~ 263 (961)
|.+..++|..||..... ..|.|.|+-|+||+.|+ .++.++. ..+..+++.+- .+-..++..++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHH
Confidence 56778999999986543 79999999999999999 7777652 22666665332 223344555555
Q ss_pred HcCC-----------------------CCCCC-CC-HHHHHHH-------HHH-------------------HhC---Cc
Q 002132 264 ALGI-----------------------PSSNL-GE-FQSLLKL-------ISE-------------------SIT---GK 289 (961)
Q Consensus 264 ~l~~-----------------------~~~~~-~~-~~~l~~~-------l~~-------------------~l~---~k 289 (961)
++|- ...+. .. ..++... |++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 5432 11111 11 1122211 111 111 23
Q ss_pred eEEEEEeCCCCCCcc---ChhhhHH---hhhCCCCCcEEEEEccchhhhhh----hccCCcceEEcCCCCHHHHHHHHHH
Q 002132 290 RFLLVLDDVWDGDCI---KWEPFYL---CLKNGLHGSKILVTTRKKSVASM----MGSTDTDIITVMELTEEECWSLFKR 359 (961)
Q Consensus 290 r~LlVlDdv~~~~~~---~~~~l~~---~l~~~~~gs~iivTtR~~~~~~~----~~~~~~~~~~l~~L~~~~~~~lf~~ 359 (961)
+-+||+|+.-..... -|+.+.. .+- ..+-.+||++|-+...... +.......+.|...+.+.|..+...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 679999998653221 1222221 111 2345679988887665543 3333446789999999999999988
Q ss_pred HHcCCCCC------------CC----hhhHHHHHHHHHhhcCCCchhHHHHHHhhccCCCHH
Q 002132 360 LAFFGPSI------------ND----CEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQIEE 405 (961)
Q Consensus 360 ~~~~~~~~------------~~----~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~ 405 (961)
+....... .. ...........++..||--.-+..+++.++...+++
T Consensus 228 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 228 QLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 87432110 00 012444566778899999999999999998876543
No 184
>CHL00176 ftsH cell division protein; Validated
Probab=97.31 E-value=0.0033 Score=73.73 Aligned_cols=179 Identities=17% Similarity=0.109 Sum_probs=96.0
Q ss_pred CceecccchHHHHHH---HHhcCCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHH
Q 002132 183 EEICGRVGERNELLS---KLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFR 256 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~---~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (961)
.+++|.++.++++.+ ++..... -.....+-+.++|++|+|||+||+.++... . +-|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 457887766655544 4432211 001123468999999999999999998843 1 123333211 1
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCC----------ccChhhh-HHhhhC-----CCCCc
Q 002132 257 VAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGD----------CIKWEPF-YLCLKN-----GLHGS 320 (961)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l-~~~l~~-----~~~gs 320 (961)
+.. .... .....+...+.......+++|++||++... ...+... ...+.. ...+.
T Consensus 252 f~~----~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVE----MFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHH----Hhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 111 1000 112233444555556778999999996431 1122222 222211 23455
Q ss_pred EEEEEccchhhhhh-hc-cC-CcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCC
Q 002132 321 KILVTTRKKSVASM-MG-ST-DTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKG 386 (961)
Q Consensus 321 ~iivTtR~~~~~~~-~~-~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 386 (961)
.||.||........ +. .. -...+.+...+.++-.++++.++..... ........+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-----SPDVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-----chhHHHHHHHhcCCC
Confidence 67777766543221 11 11 1256888888999999999887643111 112235677777777
No 185
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=9.2e-05 Score=74.24 Aligned_cols=87 Identities=21% Similarity=0.160 Sum_probs=58.5
Q ss_pred CCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCC-cCC
Q 002132 757 KKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCE-QLP 835 (961)
Q Consensus 757 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~l~ 835 (961)
.++.++.++|.||.+.+ .+++...+..+|.|+.|+|+.|.....+-.--..+.+|+.|.|.+..+.- ...
T Consensus 69 ~~~~v~elDL~~N~iSd---------WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISD---------WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred Hhhhhhhhhcccchhcc---------HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh
Confidence 45677788888877654 56677778888888888888887665322111345688888888776532 222
Q ss_pred C-CCCccccceeeccccc
Q 002132 836 P-LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 836 ~-l~~l~~L~~L~L~~~~ 852 (961)
. +..+|.++.|.++.|.
T Consensus 140 s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNS 157 (418)
T ss_pred hhhhcchhhhhhhhccch
Confidence 2 6677788888777663
No 186
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.30 E-value=0.0027 Score=70.64 Aligned_cols=148 Identities=21% Similarity=0.187 Sum_probs=88.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceE
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRF 291 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~ 291 (961)
++.|.|+-++||||+++.+.... .+. .+++...+......-+.+. ...+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCc
Confidence 99999999999999997666532 111 5666544322111111111 1111111122788
Q ss_pred EEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhhh-----hccCCcceEEcCCCCHHHHHHHHHHHHcCCCC
Q 002132 292 LLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASM-----MGSTDTDIITVMELTEEECWSLFKRLAFFGPS 366 (961)
Q Consensus 292 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 366 (961)
.|+||.|... .+|......+.+.++. +|++|+.+...... ..+ ....+++.|||..|...+-...+.
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~G-R~~~~~l~PlSF~Efl~~~~~~~~---- 168 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAG-RGKDLELYPLSFREFLKLKGEEIE---- 168 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCC-CceeEEECCCCHHHHHhhcccccc----
Confidence 9999999876 5799988888887666 89999887654322 222 136799999999998775431110
Q ss_pred CCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 367 INDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 367 ~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
...... .-+-.-..||.|-++..
T Consensus 169 ---~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 169 ---PSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred ---hhHHHH-HHHHHHHhCCCcHHHhC
Confidence 001111 22233457888877654
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0087 Score=70.19 Aligned_cols=123 Identities=15% Similarity=0.272 Sum_probs=78.7
Q ss_pred CceecccchHHHHHHHHhcCCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC---CeEEEEEeCCcccHHH
Q 002132 183 EEICGRVGERNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF---DKLLWVCVSDPFEQFR 256 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~~~~~~ 256 (961)
..++|-+..++.+.+.+..... +.+....+...+|+.|||||-||+.++.. -| +..+-++.|.....-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~EkH- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYMEKH- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHHHH-
Confidence 4688999999999888765432 11445678888999999999999999884 24 345555555432211
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceE-EEEEeCCCCCCccChhhhHHhhhCC
Q 002132 257 VAKAIAEALGIPSSNLGEFQSLLKLISESITGKRF-LLVLDDVWDGDCIKWEPFYLCLKNG 316 (961)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (961)
. ++.|-+.+++-...++ .-.|.+..+.++| +|.||++.....+-.+.+...|.++
T Consensus 565 ---s-VSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 ---S-VSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ---H-HHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 1 2223233322211111 2234556677777 8889999888777777788777764
No 188
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.29 E-value=0.00088 Score=74.60 Aligned_cols=160 Identities=15% Similarity=0.091 Sum_probs=87.8
Q ss_pred CceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
.++.|.+..++++.+.+.-.-.. .-...+-+.++|++|+|||++|+.+++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 45788998888888776421100 0113356789999999999999999994 33333 2222111
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCc----------cCh-hhhHHhhh---C--CCCC
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDC----------IKW-EPFYLCLK---N--GLHG 319 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----------~~~-~~l~~~l~---~--~~~g 319 (961)
+. ....+ .....+...+.....+.+.+|+||+++.... .+. ..+...+. . ...+
T Consensus 253 -L~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 11 11100 0111122223333345678999999753200 001 11222221 1 1245
Q ss_pred cEEEEEccchhhhhhhc--c-CCcceEEcCCCCHHHHHHHHHHHHc
Q 002132 320 SKILVTTRKKSVASMMG--S-TDTDIITVMELTEEECWSLFKRLAF 362 (961)
Q Consensus 320 s~iivTtR~~~~~~~~~--~-~~~~~~~l~~L~~~~~~~lf~~~~~ 362 (961)
.+||+||.........- . .-...+++...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 67888887655433211 1 1125789999999999999987753
No 189
>PRK12377 putative replication protein; Provisional
Probab=97.28 E-value=0.00058 Score=70.11 Aligned_cols=101 Identities=21% Similarity=0.120 Sum_probs=59.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
..+.++|..|+|||+||..+++.. ......++++++. +++..+-..... ...... +.+.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cCC
Confidence 578999999999999999999954 3444456777554 344444443321 111111 22222 346
Q ss_pred EEEEEeCCCCCCccChhh--hHHhhhCCC-CCcEEEEEccc
Q 002132 291 FLLVLDDVWDGDCIKWEP--FYLCLKNGL-HGSKILVTTRK 328 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~--l~~~l~~~~-~gs~iivTtR~ 328 (961)
-||||||+......+|.. +...+.... +.--+||||..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 699999996654445543 333333321 22347777764
No 190
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.28 E-value=0.0029 Score=77.55 Aligned_cols=138 Identities=14% Similarity=0.199 Sum_probs=78.0
Q ss_pred CceecccchHHHHHHHHhcCCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++.. -..-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-h----
Confidence 4689999999999888764321 002233578899999999999999998742 11222344555443211 1
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHhC-CceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEcc
Q 002132 260 AIAEALGIPSSNLGEFQSLLKLISESIT-GKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTR 327 (961)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 327 (961)
.....+.+..+.....+. ...+.+.++ ...-+|+|||+...+...+..+...+..+. ..+.||+||.
T Consensus 641 ~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 112222222221111110 111222222 223599999998877777888877775531 2233777776
Q ss_pred c
Q 002132 328 K 328 (961)
Q Consensus 328 ~ 328 (961)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 191
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.27 E-value=0.0029 Score=77.97 Aligned_cols=136 Identities=17% Similarity=0.261 Sum_probs=80.3
Q ss_pred CceecccchHHHHHHHHhcCCcc---cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
..++|.+..++.+...+.....+ .+....++.++|+.|+|||++|+.+.... ...-...+.++++...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccch---
Confidence 45899999999999888753210 01234678899999999999999998842 22223345555554322111
Q ss_pred HHHHHcCCCCCCC---CCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEE
Q 002132 260 AIAEALGIPSSNL---GEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVT 325 (961)
Q Consensus 260 ~i~~~l~~~~~~~---~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 325 (961)
....++.+ ++- .+...+...++. ....+|+||++...+...+..+...+..+. ..+-||+|
T Consensus 640 -~~~l~g~~-~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 -VARLIGAP-PGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred -HHHhcCCC-CCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 11112222 111 111223222222 233599999999888778888888876541 23447777
Q ss_pred ccc
Q 002132 326 TRK 328 (961)
Q Consensus 326 tR~ 328 (961)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 192
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.011 Score=67.17 Aligned_cols=167 Identities=16% Similarity=0.176 Sum_probs=93.3
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
-+.+.+|.++-+++|++++.-..-...-+-++++.+|++|||||++|+.++.- ....| +-++|+.-.|+.+|-..
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhccc
Confidence 35678999999999999986433212346689999999999999999999984 34444 23355555554443110
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCC----------------ccChhhhHHhhhCC-CCCcEEE
Q 002132 261 IAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGD----------------CIKWEPFYLCLKNG-LHGSKIL 323 (961)
Q Consensus 261 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~~~l~~~l~~~-~~gs~ii 323 (961)
....-..-...+++.+++. +-.+-|+.+|.|+... .++-..|.+...+- -.=|||+
T Consensus 484 ------RRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 484 ------RRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ------ceeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 0000001112333333333 3457789999986421 11111222221111 1236676
Q ss_pred EEccchhhhhh----hccCCcceEEcCCCCHHHHHHHHHHHH
Q 002132 324 VTTRKKSVASM----MGSTDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 324 vTtR~~~~~~~----~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
+...-..+... .... .++++.+...+|-..+-.++.
T Consensus 557 FicTAN~idtIP~pLlDRM--EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRM--EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhh--heeeccCccHHHHHHHHHHhh
Confidence 43322211111 1122 678999999888888776654
No 193
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.26 E-value=0.0036 Score=63.28 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=29.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEe
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCV 248 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 248 (961)
-.++|+|..|+|||||+..+..+ ....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 35789999999999999999884 5678877777654
No 194
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.22 E-value=0.0031 Score=76.42 Aligned_cols=121 Identities=18% Similarity=0.255 Sum_probs=72.6
Q ss_pred CceecccchHHHHHHHHhcCCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
..++|.+..++.+...+..... ..+....++.++|+.|+|||+||+.++... +...+.++.+...+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----
Confidence 3588999999988888764311 002234578999999999999999998842 3345666655432211
Q ss_pred HHHHHcCCCCC--CCCCHHHHHHHHHHHhC-CceEEEEEeCCCCCCccChhhhHHhhhCC
Q 002132 260 AIAEALGIPSS--NLGEFQSLLKLISESIT-GKRFLLVLDDVWDGDCIKWEPFYLCLKNG 316 (961)
Q Consensus 260 ~i~~~l~~~~~--~~~~~~~l~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (961)
.+...++.+.. +..+...+ .+.++ ...-+++||+++......+..+...+..+
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l----~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred cHHHHhcCCCCCcccchhhHH----HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 11112222111 11112223 23333 33469999999988777777777776553
No 195
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.22 E-value=0.00047 Score=67.33 Aligned_cols=102 Identities=21% Similarity=0.314 Sum_probs=52.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
..-+.++|..|+|||.||..+.+.. ..+-..+.|+.+ .+++..+-. .. .....+.. +... . +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~--~~~g~~v~f~~~------~~L~~~l~~----~~-~~~~~~~~---~~~l-~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA--IRKGYSVLFITA------SDLLDELKQ----SR-SDGSYEEL---LKRL-K-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEH------HHHHHHHHC----CH-CCTTHCHH---HHHH-H-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh--ccCCcceeEeec------Cceeccccc----cc-cccchhhh---cCcc-c-c
Confidence 3568999999999999999999854 223345677754 334444432 11 11122222 2222 2 2
Q ss_pred eEEEEEeCCCCCCccChhh--hHHhhhCCCCCcEEEEEccch
Q 002132 290 RFLLVLDDVWDGDCIKWEP--FYLCLKNGLHGSKILVTTRKK 329 (961)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~--l~~~l~~~~~gs~iivTtR~~ 329 (961)
-=||||||+......+|.. +...+........+||||...
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 3588899997654444432 222222211122588888754
No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0059 Score=66.07 Aligned_cols=177 Identities=10% Similarity=0.052 Sum_probs=103.7
Q ss_pred HHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCC---e-----EEEEEeCCcccHHHHHHHHHH
Q 002132 192 RNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFD---K-----LLWVCVSDPFEQFRVAKAIAE 263 (961)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~-----~~wv~~s~~~~~~~~~~~i~~ 263 (961)
-+++...+... .-..-+.+.|+.|+||+++|..++...-=...-+ | .-++.....+|+..+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (334)
T PRK07993 11 YEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL------ 79 (334)
T ss_pred HHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 45566666532 2345778999999999999998766421000000 0 000001111111100
Q ss_pred HcCCCC-CCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hh-hhhc
Q 002132 264 ALGIPS-SNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VA-SMMG 336 (961)
Q Consensus 264 ~l~~~~-~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~-~~~~ 336 (961)
.... ...-.++++.+..... ..+++=++|+|+++..+......+...+.....++.+|++|.+.+ +. +..+
T Consensus 80 --~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 80 --TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred --ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0000 0112334433322221 236677999999998887788889999988777888887777654 33 2233
Q ss_pred cCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHH
Q 002132 337 STDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAK 392 (961)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 392 (961)
.. ..+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|..+.
T Consensus 158 RC--q~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RC--RLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cc--ccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 33 678999999999998886542 1 11 2236688999999996443
No 197
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.21 E-value=0.0027 Score=70.35 Aligned_cols=160 Identities=13% Similarity=0.073 Sum_probs=87.0
Q ss_pred CCceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccH
Q 002132 182 EEEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQ 254 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 254 (961)
-.++.|.+..++++.+.+..+-.. +-...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~------ 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVG------ 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEeh------
Confidence 346889888888887765321100 01234668899999999999999999842 2222 22211
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCC----------ccChh-hhHHhhh---C--CCC
Q 002132 255 FRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGD----------CIKWE-PFYLCLK---N--GLH 318 (961)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~-~l~~~l~---~--~~~ 318 (961)
..+ .....+ .....+.+.+.......+.+|++|+++..- ..... .+...+. . ...
T Consensus 213 s~l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEF----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHH----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111 111111 011122223333334668999999986421 00111 1222222 1 124
Q ss_pred CcEEEEEccchhhhhh--hccC-CcceEEcCCCCHHHHHHHHHHHH
Q 002132 319 GSKILVTTRKKSVASM--MGST-DTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 319 gs~iivTtR~~~~~~~--~~~~-~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
+..||+||...+.... .... -...+++...+.++..++|+...
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 5678888876553322 1111 12568898889999888888665
No 198
>PRK06526 transposase; Provisional
Probab=97.21 E-value=0.00076 Score=69.85 Aligned_cols=100 Identities=22% Similarity=0.204 Sum_probs=54.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
..+.|+|++|+|||+||..+.+.. ...-..+.|+ +..+++..+..... .. .+...+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a--~~~g~~v~f~------t~~~l~~~l~~~~~-----~~---~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA--CQAGHRVLFA------TAAQWVARLAAAHH-----AG---RLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH--HHCCCchhhh------hHHHHHHHHHHHHh-----cC---cHHHHHHHh--ccC
Confidence 458999999999999999998853 2222234443 33344444443311 11 112223322 234
Q ss_pred EEEEEeCCCCCCccChh--hhHHhhhCC-CCCcEEEEEccch
Q 002132 291 FLLVLDDVWDGDCIKWE--PFYLCLKNG-LHGSKILVTTRKK 329 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 329 (961)
-+||+||+.......|. .+...+... ..++ +|+||..+
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 58999999764322332 233333321 2344 88888765
No 199
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.0072 Score=65.15 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hh-hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCC
Q 002132 288 GKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VA-SMMGSTDTDIITVMELTEEECWSLFKRLAFFGP 365 (961)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~-~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 365 (961)
+++=++|+|+++..+...+..+...+.....++.+|++|.+.+ +. +..+.. ..+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRc--q~i~~~~~~~~~~~~~L~~~~---~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRC--RQFPMTVPAPEAAAAWLAAQG---V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcC--EEEEecCCCHHHHHHHHHHcC---C
Confidence 5566899999999988889999999988777887776666644 33 223223 789999999999999987641 1
Q ss_pred CCCChhhHHHHHHHHHhhcCCCchhHHHHH
Q 002132 366 SINDCEKLEQIGRRIAGKFKGLPLAAKTIG 395 (961)
Q Consensus 366 ~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 395 (961)
. + ...++..++|.|..+..+.
T Consensus 206 --~--~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --A--D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --C--h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1235777899997555443
No 200
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.19 E-value=0.0086 Score=62.86 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=58.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH------------HHcCCCCCCCCCHHHHH
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA------------EALGIPSSNLGEFQSLL 279 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~------------~~l~~~~~~~~~~~~l~ 279 (961)
-|.+.|++|+|||+||+.+++. .. ...+.+++....+..+++.... ........ .....-..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RD---RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLED-IVRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hC---CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhc-ccceeecC
Confidence 4569999999999999999872 21 2345666666555555443211 00000000 00000000
Q ss_pred HHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCC----------------CCCcEEEEEccch
Q 002132 280 KLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNG----------------LHGSKILVTTRKK 329 (961)
Q Consensus 280 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iivTtR~~ 329 (961)
..+.... .+...+++|++...+.+.+..+...+..+ .++.+||+|+...
T Consensus 97 g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 97 NRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred chHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 0111111 13468999999887665666666655331 1255788887753
No 201
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.17 E-value=9.4e-05 Score=73.18 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=65.2
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc----ccch-------hhhccCCCcEEeecCccc
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR----KLPE-------TLCELYNLEKLYITRCLY 664 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~----~Lp~-------~i~~L~~L~~L~L~~~~~ 664 (961)
+..+..+..++||||...+. -...+...|.+-.+|+..+++.-... ++|+ .+-++++||+.+||.|-+
T Consensus 26 l~~~d~~~evdLSGNtigtE-A~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTE-AMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHH-HHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 44588999999999983221 12235566777789999999854322 4443 356889999999999986
Q ss_pred ccccchh----hhcccCCceeecCCcc
Q 002132 665 LEELPEG----IGKLINMKHLLNYRTD 687 (961)
Q Consensus 665 l~~lp~~----i~~L~~L~~L~l~~~~ 687 (961)
-...|+. |++-+.|.||.+++|.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCC
Confidence 6666654 5567789999999885
No 202
>PRK08118 topology modulation protein; Reviewed
Probab=97.16 E-value=0.0002 Score=69.32 Aligned_cols=34 Identities=35% Similarity=0.725 Sum_probs=27.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhH-hcCCeEEE
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVK-RKFDKLLW 245 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 245 (961)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999865333 45676765
No 203
>PRK06921 hypothetical protein; Provisional
Probab=97.13 E-value=0.0025 Score=66.66 Aligned_cols=100 Identities=23% Similarity=0.350 Sum_probs=56.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhc-CCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRK-FDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITG 288 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 288 (961)
...+.++|..|+|||+||..+++.. ... ...++|+... +++..+.... +.....+.. + .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l--~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~-~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL--MRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNR-M-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--hhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHHH-h-c
Confidence 4568999999999999999999953 333 3456777642 2333332221 111112222 2 2
Q ss_pred ceEEEEEeCCCC-----CCccChhh--hHHhhhCC-CCCcEEEEEccch
Q 002132 289 KRFLLVLDDVWD-----GDCIKWEP--FYLCLKNG-LHGSKILVTTRKK 329 (961)
Q Consensus 289 kr~LlVlDdv~~-----~~~~~~~~--l~~~l~~~-~~gs~iivTtR~~ 329 (961)
+--||||||+.. +...+|.. +...+... ..+..+||||...
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 346999999933 22234543 44333322 1344588888653
No 204
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.11 E-value=0.019 Score=62.82 Aligned_cols=169 Identities=9% Similarity=0.093 Sum_probs=95.1
Q ss_pred cchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhH-hcCCeEEEEEe----CCcccHHHHHHHHHH
Q 002132 189 VGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK-RKFDKLLWVCV----SDPFEQFRVAKAIAE 263 (961)
Q Consensus 189 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~----s~~~~~~~~~~~i~~ 263 (961)
+.-.+.+.+.+.... .....+|+|.|.=|+||||+.+++.+..+.. ..--.++|.+. ....-...++.+|..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~ 78 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFD 78 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHH
Confidence 344566777776543 1367899999999999999999998854322 00112333333 222223444555554
Q ss_pred HcCCCCC-----------------------------C-------------------------------------CCCHHH
Q 002132 264 ALGIPSS-----------------------------N-------------------------------------LGEFQS 277 (961)
Q Consensus 264 ~l~~~~~-----------------------------~-------------------------------------~~~~~~ 277 (961)
++..... . ..+.++
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (325)
T PF07693_consen 79 QLEKHFGSKKIKLYAKKKLKSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEE 158 (325)
T ss_pred HHHHhcCccchhHHHhhhhhhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHH
Confidence 4421100 0 001111
Q ss_pred HHHHHHHHhC--CceEEEEEeCCCCCCccChhhhHHhhhC--CCCCcEEEEEccchhhhhhhccC---------------
Q 002132 278 LLKLISESIT--GKRFLLVLDDVWDGDCIKWEPFYLCLKN--GLHGSKILVTTRKKSVASMMGST--------------- 338 (961)
Q Consensus 278 l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~--~~~gs~iivTtR~~~~~~~~~~~--------------- 338 (961)
....+.+.+. ++|.++|+||++..+.+...++...+.. ..++..+|+..-...+.......
T Consensus 159 ~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLe 238 (325)
T PF07693_consen 159 LISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLE 238 (325)
T ss_pred HHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHH
Confidence 2333444443 5799999999988765544444444332 23677777777666555543321
Q ss_pred --CcceEEcCCCCHHHHHHHHHHH
Q 002132 339 --DTDIITVMELTEEECWSLFKRL 360 (961)
Q Consensus 339 --~~~~~~l~~L~~~~~~~lf~~~ 360 (961)
-..++.+++.+..+-..+|...
T Consensus 239 Kiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 239 KIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred hhcCeEEEeCCCCHHHHHHHHHHH
Confidence 0135777777777766666554
No 205
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.10 E-value=0.00024 Score=83.97 Aligned_cols=109 Identities=22% Similarity=0.197 Sum_probs=81.1
Q ss_pred CCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhh
Q 002132 569 VKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETL 648 (961)
Q Consensus 569 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i 648 (961)
-.+|+.|.+.+... +...-+..+...+|.||.|.+++-... ..++..-..++++|+.||+|+|+|+.+ ..+
T Consensus 121 r~nL~~LdI~G~~~----~s~~W~~kig~~LPsL~sL~i~~~~~~----~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI 191 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL----FSNGWPKKIGTMLPSLRSLVISGRQFD----NDDFSQLCASFPNLRSLDISGTNISNL-SGI 191 (699)
T ss_pred HHhhhhcCccccch----hhccHHHHHhhhCcccceEEecCceec----chhHHHHhhccCccceeecCCCCccCc-HHH
Confidence 45788888887652 233446666778999999999986521 223344566889999999999999998 779
Q ss_pred hccCCCcEEeecCcccccccc--hhhhcccCCceeecCCcc
Q 002132 649 CELYNLEKLYITRCLYLEELP--EGIGKLINMKHLLNYRTD 687 (961)
Q Consensus 649 ~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 687 (961)
++|++||+|.+.+=. ...-+ .++.+|++|++||++...
T Consensus 192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccc
Confidence 999999999988744 22211 357889999999998764
No 206
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.09 E-value=0.0063 Score=62.83 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=96.9
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHH-HHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFR-VAKA 260 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~-~~~~ 260 (961)
...++|-.++..++-.++..... .+...-+.|+|+.|.|||+|...+..+ .+..-+..+-|........++ .++.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHH
Confidence 34688999999998888875543 223345789999999999999888876 233334455555555443322 3444
Q ss_pred HHHHc----CCCCCCCCCHHHHHHHHHHHhC------CceEEEEEeCCCCCCccChhhh-HHhh---hC-CCCCcEEEEE
Q 002132 261 IAEAL----GIPSSNLGEFQSLLKLISESIT------GKRFLLVLDDVWDGDCIKWEPF-YLCL---KN-GLHGSKILVT 325 (961)
Q Consensus 261 i~~~l----~~~~~~~~~~~~l~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~l-~~~l---~~-~~~gs~iivT 325 (961)
|..++ ........+..+....+...|+ +-++++|+|.++-...-.-..+ ...| .. ..+-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 44444 3322222223333334444443 2357888887754321111111 1112 11 2345667799
Q ss_pred ccchhhhh---hhccC-Ccc-eEEcCCCCHHHHHHHHHHHH
Q 002132 326 TRKKSVAS---MMGST-DTD-IITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 326 tR~~~~~~---~~~~~-~~~-~~~l~~L~~~~~~~lf~~~~ 361 (961)
||-..... .+... ... ++-+++++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99654322 12111 113 45556677788888887765
No 207
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.09 E-value=0.0001 Score=73.02 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=65.9
Q ss_pred ccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-------ccccccCccceEEec
Q 002132 565 PICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP-------RNIEKLVHLRYLNLS 637 (961)
Q Consensus 565 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-------~~i~~L~~Lr~L~L~ 637 (961)
.+..+..+..+.+++|.+... ....+...+.+-++||+.+++.-.. +.....+| +.+-+|++|+..+||
T Consensus 25 el~~~d~~~evdLSGNtigtE--A~e~l~~~ia~~~~L~vvnfsd~ft--gr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTE--AMEELCNVIANVRNLRVVNFSDAFT--GRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HHHhhcceeEEeccCCcccHH--HHHHHHHHHhhhcceeEeehhhhhh--cccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 344577888999999874311 1122334466778999999987641 11122333 445689999999999
Q ss_pred CCccc-ccc----hhhhccCCCcEEeecCcccccc
Q 002132 638 CQNIR-KLP----ETLCELYNLEKLYITRCLYLEE 667 (961)
Q Consensus 638 ~~~i~-~Lp----~~i~~L~~L~~L~L~~~~~l~~ 667 (961)
.|-+. ..| ..|++-.+|.+|.+++|. +..
T Consensus 101 DNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp 134 (388)
T COG5238 101 DNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGP 134 (388)
T ss_pred ccccCcccchHHHHHHhcCCCceeEEeecCC-CCc
Confidence 99876 333 446788999999999987 443
No 208
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.09 E-value=0.0001 Score=65.34 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=44.3
Q ss_pred hHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchh
Q 002132 592 LEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEG 671 (961)
Q Consensus 592 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 671 (961)
++.+..+++.++.|+|++|. +.++|..+..++.||.|+++.|.+...|+-|..|.+|-.||..+|. ..++|-+
T Consensus 69 p~kft~kf~t~t~lNl~~ne------isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 69 PKKFTIKFPTATTLNLANNE------ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred CHHHhhccchhhhhhcchhh------hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 44444455566666666666 6666666666666666666666666666666666666666666555 4455543
No 209
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.07 E-value=0.0018 Score=63.92 Aligned_cols=131 Identities=21% Similarity=0.207 Sum_probs=66.1
Q ss_pred cccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc--cc-------HH--
Q 002132 187 GRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP--FE-------QF-- 255 (961)
Q Consensus 187 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~-------~~-- 255 (961)
.+..+....++.|. ...++.+.|++|.|||.||-..+-+.-..+.|+.++++.-.-. .+ .+
T Consensus 4 p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 45566777777776 2358999999999999999988877545578888877752111 00 00
Q ss_pred --HHHHHHHHHcCCCCCCCCCHHHHHHH------HHHHhCCc---eEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEE
Q 002132 256 --RVAKAIAEALGIPSSNLGEFQSLLKL------ISESITGK---RFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILV 324 (961)
Q Consensus 256 --~~~~~i~~~l~~~~~~~~~~~~l~~~------l~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 324 (961)
-.+.-+.+.+..-. .....+.+... -..+++|+ ..+||+|++.+.... ++...+-..+.+||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~---~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPE---ELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HH---HHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHH---HHHHHHcccCCCcEEEE
Confidence 01111222221111 11122222211 01345565 469999999887544 44455566678999999
Q ss_pred Eccch
Q 002132 325 TTRKK 329 (961)
Q Consensus 325 TtR~~ 329 (961)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 87554
No 210
>PRK04296 thymidine kinase; Provisional
Probab=97.06 E-value=0.0017 Score=64.45 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=65.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCC--CCCHHHHHHHHHHHhCC
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSN--LGEFQSLLKLISESITG 288 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~l~~~l~~ 288 (961)
.++.|+|..|.||||+|..++.. ...+...++.+. ..++.+.....+++.++..... ....+++.+.+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57889999999999999988884 333433444442 1112222233455555543221 2334455555555 334
Q ss_pred ceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh
Q 002132 289 KRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 289 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 330 (961)
+.-+||+|.+...+.++..++...+ ...|..||+|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999654322223333333 235778999998854
No 211
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.0036 Score=67.46 Aligned_cols=72 Identities=8% Similarity=0.086 Sum_probs=49.5
Q ss_pred CceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHH
Q 002132 288 GKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRL 360 (961)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 360 (961)
+++-++|+|++...+...-..+...+.....+..+|++|.+.. +...+. .....+.+.+++.++..+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~-SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK-SRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH-HHhhhhcCCCCCHHHHHHHHHhc
Confidence 4445566798888776667777777776555666777777754 332221 12367999999999999888654
No 212
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.04 E-value=0.002 Score=78.57 Aligned_cols=136 Identities=21% Similarity=0.275 Sum_probs=78.4
Q ss_pred CceecccchHHHHHHHHhcCCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.||+.++... -......+-++++...+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l--~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL--YGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH--hCCCcceEEEeHHHhhhhh----
Confidence 4689999999999988864311 112345689999999999999999887742 1112223333333221111
Q ss_pred HHHHHcCCCCCCC---CCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEE
Q 002132 260 AIAEALGIPSSNL---GEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVT 325 (961)
Q Consensus 260 ~i~~~l~~~~~~~---~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 325 (961)
.+ ..+-+..++- .+...+...+++ ...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 640 ~~-~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 TV-SRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hh-ccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 11 1221221111 111223333332 445699999998877777777777776542 34556666
Q ss_pred ccc
Q 002132 326 TRK 328 (961)
Q Consensus 326 tR~ 328 (961)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 654
No 213
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.02 E-value=0.0051 Score=66.13 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=66.8
Q ss_pred hHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCe-EEEEEeCC-cccHHHHHHHHHHHcCCC
Q 002132 191 ERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDK-LLWVCVSD-PFEQFRVAKAIAEALGIP 268 (961)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~-~~~~~~~~~~i~~~l~~~ 268 (961)
...++++.+..-. +-+.+.|+|.+|+|||||++.+++.. ...+-+. ++|+.+.+ ..++.++.+.+...+...
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i-~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAV-AANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 4456788877543 23456999999999999999998854 2223344 47767665 457788888888877654
Q ss_pred CCCCCCHHH-----HHHHHHHHh--CCceEEEEEeCCC
Q 002132 269 SSNLGEFQS-----LLKLISESI--TGKRFLLVLDDVW 299 (961)
Q Consensus 269 ~~~~~~~~~-----l~~~l~~~l--~~kr~LlVlDdv~ 299 (961)
..+...... ....+.+++ ++++.+||+|++.
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 433222211 111122222 4899999999984
No 214
>PRK09183 transposase/IS protein; Provisional
Probab=97.00 E-value=0.0032 Score=65.73 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=54.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
..+.|+|++|+|||+||..+++.. ...-..+.++++ .++...+...... .. +...+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a--~~~G~~v~~~~~------~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA--VRAGIKVRFTTA------ADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEeH------HHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 457799999999999999998743 222233445432 2333333222111 11 122222222 344
Q ss_pred EEEEEeCCCCCCccChh--hhHHhhhCC-CCCcEEEEEccch
Q 002132 291 FLLVLDDVWDGDCIKWE--PFYLCLKNG-LHGSKILVTTRKK 329 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 329 (961)
-++|+||+.......+. .+...+... ..++ +|+||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 69999999764333333 244433321 2344 88888754
No 215
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.99 E-value=0.0031 Score=70.06 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=83.3
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH-H
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI-A 262 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i-~ 262 (961)
.++||++.++.+...+.... -|.|.|++|+|||++|+.+.........|.. +.+.-. ++.+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcCcHHH
Confidence 58999999999988887443 4789999999999999999874221123321 111100 122322211 1
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhCC---ceEEEEEeCCCCCCccChhhhHHhhhCCC---------CCcEEEEEccchh
Q 002132 263 EALGIPSSNLGEFQSLLKLISESITG---KRFLLVLDDVWDGDCIKWEPFYLCLKNGL---------HGSKILVTTRKKS 330 (961)
Q Consensus 263 ~~l~~~~~~~~~~~~l~~~l~~~l~~---kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---------~gs~iivTtR~~~ 330 (961)
..... .. .+.+...| ..-++++|+++......-..+...+.... -..++++++.++-
T Consensus 89 ~~~~~----~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 89 QALKD----EG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred hhhhh----cC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 11100 00 01111112 12289999999877666666766664321 1235665555532
Q ss_pred hh------hhhccCCcceEEcCCCCHH-HHHHHHHHH
Q 002132 331 VA------SMMGSTDTDIITVMELTEE-ECWSLFKRL 360 (961)
Q Consensus 331 ~~------~~~~~~~~~~~~l~~L~~~-~~~~lf~~~ 360 (961)
.. ..+... ...+.+++++++ +-.+++...
T Consensus 158 PE~g~~leAL~DRF-liri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 158 PEADSSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cccCCchHHhHhhE-EEEEECCCCCchHHHHHHHHcc
Confidence 21 111111 145789999854 447777653
No 216
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0051 Score=67.41 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=88.2
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh-------------------cCCeEE
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-------------------KFDKLL 244 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 244 (961)
.++|-+....++..+...... ....+.++|+.|+||||+|..+++...-.. ....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 356777778888888774331 233589999999999999999988541000 112344
Q ss_pred EEEeCCccc---HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcE
Q 002132 245 WVCVSDPFE---QFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSK 321 (961)
Q Consensus 245 wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 321 (961)
.+..+.... ..+..+++.+....... .++.-++++|+++..+...-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444444433 23333333333322211 35678999999988776666667777777777888
Q ss_pred EEEEccchh-hhhhhccCCcceEEcCCCC
Q 002132 322 ILVTTRKKS-VASMMGSTDTDIITVMELT 349 (961)
Q Consensus 322 iivTtR~~~-~~~~~~~~~~~~~~l~~L~ 349 (961)
+|++|.... +...+.. ....+++.+.+
T Consensus 142 ~il~~n~~~~il~tI~S-Rc~~i~f~~~~ 169 (325)
T COG0470 142 FILITNDPSKILPTIRS-RCQRIRFKPPS 169 (325)
T ss_pred EEEEcCChhhccchhhh-cceeeecCCch
Confidence 888887443 2222211 12567777633
No 217
>PHA00729 NTP-binding motif containing protein
Probab=96.99 E-value=0.0049 Score=61.61 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+...|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999884
No 218
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.00084 Score=63.97 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=53.9
Q ss_pred cCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeecccccccccccccccccccc
Q 002132 818 TNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNT 897 (961)
Q Consensus 818 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 897 (961)
.+...++|++|.+ ..++.|..++.|..|.|.+|. |..+..... ..+|+|+.|.|.++ ++.++.....
T Consensus 42 d~~d~iDLtdNdl-~~l~~lp~l~rL~tLll~nNr-It~I~p~L~-----~~~p~l~~L~LtnN-si~~l~dl~p----- 108 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL-RKLDNLPHLPRLHTLLLNNNR-ITRIDPDLD-----TFLPNLKTLILTNN-SIQELGDLDP----- 108 (233)
T ss_pred cccceecccccch-hhcccCCCccccceEEecCCc-ceeeccchh-----hhccccceEEecCc-chhhhhhcch-----
Confidence 4555566666643 234445566666666666655 445543221 24566666666665 2333322111
Q ss_pred ccccccccceecccccccCcCCCC----CCCCCCCccEEEEccc
Q 002132 898 VINIMPRLSSLTIARCPKLKALPD----HIHQTTTLKELRIWAC 937 (961)
Q Consensus 898 ~~~~~p~L~~L~l~~c~~L~~lp~----~~~~l~~L~~L~l~~~ 937 (961)
...+|.|+.|.+.++| .+..+. .+..+|+|+.|+..+-
T Consensus 109 -La~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 -LASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred -hccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 2356666666666665 222221 2334566666666543
No 219
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.98 E-value=0.00016 Score=64.08 Aligned_cols=84 Identities=21% Similarity=0.267 Sum_probs=51.1
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccc-cCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhc
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEK-LVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGK 674 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~-L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 674 (961)
+.....|...+|++|. +.++|..+.. .+-++.|+|++|.|..+|.++..++.|+.|+++.|. +...|.-|..
T Consensus 49 l~~~~el~~i~ls~N~------fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~ 121 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNG------FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAP 121 (177)
T ss_pred HhCCceEEEEecccch------hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHH
Confidence 3444556666666666 5566655433 335666666666666666666666666666666666 5556666666
Q ss_pred ccCCceeecCCc
Q 002132 675 LINMKHLLNYRT 686 (961)
Q Consensus 675 L~~L~~L~l~~~ 686 (961)
|.+|-.|+..+|
T Consensus 122 L~~l~~Lds~~n 133 (177)
T KOG4579|consen 122 LIKLDMLDSPEN 133 (177)
T ss_pred HHhHHHhcCCCC
Confidence 666666665555
No 220
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.96 E-value=4.2e-05 Score=85.57 Aligned_cols=128 Identities=18% Similarity=0.139 Sum_probs=95.7
Q ss_pred cccceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcc
Q 002132 545 LDEKVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRN 624 (961)
Q Consensus 545 ~~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 624 (961)
.|..+...++..|........+.-++.|++|+++.|...+ -+.+..++.|+.|||++|. +..+|..
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~--------v~~Lr~l~~LkhLDlsyN~------L~~vp~l 227 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK--------VDNLRRLPKLKHLDLSYNC------LRHVPQL 227 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh--------hHHHHhcccccccccccch------hcccccc
Confidence 4555555666666554444556668899999999987432 2257889999999999998 8888753
Q ss_pred ccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccc--hhhhcccCCceeecCCccc
Q 002132 625 IEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELP--EGIGKLINMKHLLNYRTDS 688 (961)
Q Consensus 625 i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~ 688 (961)
-..=.+|..|+|++|.++.| ..|.+|.+|+.||+++|- +...- .-++.|..|+.|++.||..
T Consensus 228 ~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 228 SMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhhhhheeeeecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 22223599999999999988 458999999999999986 33221 2378899999999999864
No 221
>PRK04132 replication factor C small subunit; Provisional
Probab=96.94 E-value=0.017 Score=69.22 Aligned_cols=156 Identities=13% Similarity=-0.007 Sum_probs=99.0
Q ss_pred CCCchHHHHHHHHhcchhhHhcC-CeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEe
Q 002132 218 MGGIGKTTLAQLACNHVEVKRKF-DKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLD 296 (961)
Q Consensus 218 ~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlD 296 (961)
+.++||||+|..++++. ..+.+ ..++-+++++..... ..++++..+....+. -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 77899999999999953 12222 246777777754444 333333332111000 01245799999
Q ss_pred CCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHH
Q 002132 297 DVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQ 375 (961)
Q Consensus 297 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~ 375 (961)
+++..+......++..+.......++|++|.+.. +.....+ ....+++.+++.++....+...+...+- .. ..+
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS-RC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i---~~e 712 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS-RCAIFRFRPLRDEDIAKRLRYIAENEGL-EL---TEE 712 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh-hceEEeCCCCCHHHHHHHHHHHHHhcCC-CC---CHH
Confidence 9999877778888888876555667777666543 3222221 1378999999999998888776533221 11 134
Q ss_pred HHHHHHhhcCCCchhHHHH
Q 002132 376 IGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 376 ~~~~i~~~c~G~PLai~~~ 394 (961)
....|++.|+|.+..+..+
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 6789999999988654443
No 222
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.92 E-value=0.00094 Score=63.67 Aligned_cols=92 Identities=24% Similarity=0.272 Sum_probs=70.0
Q ss_pred HhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCC--CcCCCCCCccccceeecccccCceEeCCcccCC
Q 002132 787 LEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENC--EQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGI 864 (961)
Q Consensus 787 ~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 864 (961)
+..|..++.|.+|.+.+|.++..-|.--..+++|..|.|.+|.+. +++.++..+|+|++|.+-+|+.-..-.-..+.
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv- 135 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV- 135 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEE-
Confidence 456777899999999999998833444447899999999999875 47788999999999999998832222222222
Q ss_pred cccCcCcccceeecccc
Q 002132 865 EIIDAFPKLKSLTISSM 881 (961)
Q Consensus 865 ~~~~~f~~L~~L~l~~~ 881 (961)
+..+|+|+.|++...
T Consensus 136 --l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 136 --LYKLPSLRTLDFQKV 150 (233)
T ss_pred --EEecCcceEeehhhh
Confidence 257899999999864
No 223
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.92 E-value=0.00048 Score=64.75 Aligned_cols=89 Identities=20% Similarity=0.201 Sum_probs=50.3
Q ss_pred EEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEE
Q 002132 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFL 292 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~L 292 (961)
|.++|.+|+|||+||+.++... =....-+.++...+..+++...--. .... ...+ ..+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~-~~~~-~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPS-NGQF-EFKD-GPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET--TTTT-CEEE--CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeec-cccc-cccc-ccccccc-----cceeE
Confidence 6799999999999999999842 1234556777777777665432211 0000 0000 0000000 17899
Q ss_pred EEEeCCCCCCccChhhhHHhhh
Q 002132 293 LVLDDVWDGDCIKWEPFYLCLK 314 (961)
Q Consensus 293 lVlDdv~~~~~~~~~~l~~~l~ 314 (961)
+|||++...+..-+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999998765445555555554
No 224
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.89 E-value=0.013 Score=67.93 Aligned_cols=180 Identities=14% Similarity=0.067 Sum_probs=92.2
Q ss_pred CceecccchHHHHHHHHh---cCCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHH
Q 002132 183 EEICGRVGERNELLSKLL---CESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFR 256 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (961)
.+++|-+..++++.+++. .... -.....+-+.++|++|+|||+||+.+++.. ... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HH
Confidence 467888776666554432 2110 001123458899999999999999998842 111 222221 11
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCC----------ccChhhhHHh----hh--CCCCCc
Q 002132 257 VAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGD----------CIKWEPFYLC----LK--NGLHGS 320 (961)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~l~~~----l~--~~~~gs 320 (961)
+. ..... .....+...+.......+.+|++||++... ...+...... +. ....+.
T Consensus 124 ~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11100 112233334444445567899999995421 1112222221 11 122344
Q ss_pred EEEEEccchhhhh-hhc-c-CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCC
Q 002132 321 KILVTTRKKSVAS-MMG-S-TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGL 387 (961)
Q Consensus 321 ~iivTtR~~~~~~-~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 387 (961)
.||.||....... .+. . .-...+.+...+.++-.++|+........ .... ....+++.+.|.
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~~----~l~~la~~t~G~ 259 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APDV----DLKAVARRTPGF 259 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccch----hHHHHHHhCCCC
Confidence 5666676543211 111 1 11256889888998889998877632211 1111 234777777773
No 225
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.87 E-value=0.0011 Score=70.95 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=43.4
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
.+++|.++.++++++++.....+.....+++.++|++|+||||||+.+++..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999976543223456899999999999999999999864
No 226
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0026 Score=66.01 Aligned_cols=81 Identities=21% Similarity=0.202 Sum_probs=50.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
..-+.++|.+|+|||.||.++.+..- ..--.+.++++. +++.++...... .. ....+.+.+ .+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~~------el~~~Lk~~~~~----~~----~~~~l~~~l-~~ 167 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITAP------DLLSKLKAAFDE----GR----LEEKLLREL-KK 167 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEHH------HHHHHHHHHHhc----Cc----hHHHHHHHh-hc
Confidence 34588999999999999999999653 333456666544 466666655533 11 111222222 22
Q ss_pred eEEEEEeCCCCCCccChh
Q 002132 290 RFLLVLDDVWDGDCIKWE 307 (961)
Q Consensus 290 r~LlVlDdv~~~~~~~~~ 307 (961)
-=||||||+.......|.
T Consensus 168 ~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 168 VDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CCEEEEecccCccCCHHH
Confidence 348999999776555554
No 227
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.83 E-value=0.037 Score=63.04 Aligned_cols=209 Identities=16% Similarity=0.079 Sum_probs=122.8
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchh---hHhcCCe--EEEEEeCCcccHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE---VKRKFDK--LLWVCVSDPFEQFRV 257 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f~~--~~wv~~s~~~~~~~~ 257 (961)
..+-+|+.|..+|-.++...-+. +.....+.|.|.+|.|||..+..|.+... .++.-.. .+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 34678999999998888755442 23456999999999999999999998653 1122222 344454445578999
Q ss_pred HHHHHHHcCCCCCCC-CCHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhhHHhhhC-CCCCcEEEEEccch-----
Q 002132 258 AKAIAEALGIPSSNL-GEFQSLLKLISES-ITGKRFLLVLDDVWDGDCIKWEPFYLCLKN-GLHGSKILVTTRKK----- 329 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~-~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~----- 329 (961)
+..|..++.+..... ..++.+...+... -+.+..++++|+++..=...-+.+...|.+ ..++||++|-+-..
T Consensus 475 Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 475 YEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred HHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCH
Confidence 999999998764322 2223222222200 124468899998854211112334444444 34677776654211
Q ss_pred ------hhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHH
Q 002132 330 ------SVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGS 396 (961)
Q Consensus 330 ------~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~ 396 (961)
.++..+ +..-+...|.+.++-.++...+..+... -.....+-++++++.-.|-.-.|+.+.-+
T Consensus 555 Er~l~nrvsSRl---g~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 555 ERLLMNRVSSRL---GLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred HHHhccchhhhc---cceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 122222 2256788889999988888777643311 12223344556666555555555554433
No 228
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.82 E-value=0.01 Score=71.17 Aligned_cols=122 Identities=17% Similarity=0.272 Sum_probs=70.7
Q ss_pred ceecccchHHHHHHHHhcCCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 184 EICGRVGERNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
.++|-++.++.+...+..... ........+.++|+.|+|||++|+.++... . ...+.++++...+.. .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhcccc----c
Confidence 589999999999888763211 002234578999999999999999998843 2 234445554322211 1
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHhC-CceEEEEEeCCCCCCccChhhhHHhhhCC
Q 002132 261 IAEALGIPSSNLGEFQSLLKLISESIT-GKRFLLVLDDVWDGDCIKWEPFYLCLKNG 316 (961)
Q Consensus 261 i~~~l~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (961)
+.+-++.+ +.-...+ ....+.+.++ ....+|+||+++....+.+..+...+..+
T Consensus 530 ~~~LiG~~-~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 530 VSRLIGAP-PGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred HHHHcCCC-CCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 11222222 1111000 0111222333 33469999999988777777777776543
No 229
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.81 E-value=0.0052 Score=71.21 Aligned_cols=45 Identities=29% Similarity=0.356 Sum_probs=36.1
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|.+..++.+...+... ...-+.|+|..|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999998776532 2245679999999999999999864
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.80 E-value=0.0044 Score=66.66 Aligned_cols=103 Identities=16% Similarity=0.258 Sum_probs=57.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
..+.++|..|+|||+||..+++.. ...-..++++++.. ++..+...-. . ...+.... + +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~~---~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTADE------LIEILREIRF-N--NDKELEEV---Y-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHHH------HHHHHHHHHh-c--cchhHHHH---H-HHhc-cC
Confidence 568999999999999999999954 33334567765533 3333332111 0 11111111 1 2222 23
Q ss_pred EEEEEeCCCCCCccChhh--hHHhhhCC-CCCcEEEEEccch
Q 002132 291 FLLVLDDVWDGDCIKWEP--FYLCLKNG-LHGSKILVTTRKK 329 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~~ 329 (961)
=||||||+.......|.. +...+... ..+..+||||...
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 489999997654444433 33333322 2345688888753
No 231
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.045 Score=54.00 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=71.5
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
+-..++|-+...+.+++--..-.. ....--|.+||.-|.|||+|++++.+. +....-..+-| ...
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glrLVEV--~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNE--YADEGLRLVEV--DKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHH--HHhcCCeEEEE--cHH---------
Confidence 445689999888888764332111 112345789999999999999999994 44444333322 221
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC---CCCcEEEEEccch
Q 002132 261 IAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG---LHGSKILVTTRKK 329 (961)
Q Consensus 261 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs~iivTtR~~ 329 (961)
+..++..+...|+. ..+||+|..||+.-+ +...+..+++.+..+ .+...++..|.++
T Consensus 123 ----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11111222222221 367999999999643 345677777777643 2344455555544
No 232
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.79 E-value=0.0044 Score=62.86 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=37.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
.-.++.|+|.+|+|||++|.+++.. .......++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4589999999999999999998874 334457899999976 66655443
No 233
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.018 Score=62.21 Aligned_cols=104 Identities=11% Similarity=0.147 Sum_probs=58.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
+.++|+++|++|+||||++.+++... ...-..+..+..... ....+-++..++.++.+.....+...+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999998743 233234555655432 123333444555555443333455556555544432
Q ss_pred C-ceEEEEEeCCCCCC--ccChhhhHHhhh
Q 002132 288 G-KRFLLVLDDVWDGD--CIKWEPFYLCLK 314 (961)
Q Consensus 288 ~-kr~LlVlDdv~~~~--~~~~~~l~~~l~ 314 (961)
. +.=+|++|-..... .....++...+.
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 2 23477888875432 122444444443
No 234
>PRK07261 topology modulation protein; Provisional
Probab=96.75 E-value=0.0026 Score=61.87 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=40.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhH-hcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVK-RKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
.|.|+|++|+||||||+.+....... -+.|...|-... ...+.++..+.+...+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 47899999999999999987642111 133444442111 11223455556666666656
Q ss_pred EEEEEeCCCC
Q 002132 291 FLLVLDDVWD 300 (961)
Q Consensus 291 ~LlVlDdv~~ 300 (961)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 67788743
No 235
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.74 E-value=0.0052 Score=75.53 Aligned_cols=136 Identities=16% Similarity=0.241 Sum_probs=78.1
Q ss_pred CceecccchHHHHHHHHhcCCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
..++|-+..++.+...+..... ..+.....+.++|+.|+|||+||+.+++.. -..-...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhccccccH--
Confidence 4689999999999887753221 112234567799999999999999998732 111123444444432221111
Q ss_pred HHHHHcCCCC--CCCCCHHHHHHHHHHHhCCce-EEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEE
Q 002132 260 AIAEALGIPS--SNLGEFQSLLKLISESITGKR-FLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVT 325 (961)
Q Consensus 260 ~i~~~l~~~~--~~~~~~~~l~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 325 (961)
...++.+. .+..+... +.+.++.++ -+++||+++..+...++.+...+..+. ..+-||+|
T Consensus 585 --~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11122211 01112222 333444344 589999999887777888887776541 34556666
Q ss_pred ccc
Q 002132 326 TRK 328 (961)
Q Consensus 326 tR~ 328 (961)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 654
No 236
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.69 E-value=0.013 Score=55.41 Aligned_cols=114 Identities=18% Similarity=0.097 Sum_probs=66.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC---cccHHHHHHHHHHHcCC--------CC-CCCCC----
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD---PFEQFRVAKAIAEALGI--------PS-SNLGE---- 274 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~~--------~~-~~~~~---- 274 (961)
..|-|++..|.||||+|-..+- +...+-..+.++-+-. ......+ ++.+.. .. ....+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~----l~~l~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKA----LERLPNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHH----HHhCCCcEEEECCCCCccCCCChHHH
Confidence 4678889999999999987776 3333333455544322 2222233 333310 00 00011
Q ss_pred ---HHHHHHHHHHHhCC-ceEEEEEeCCCCC---CccChhhhHHhhhCCCCCcEEEEEccchh
Q 002132 275 ---FQSLLKLISESITG-KRFLLVLDDVWDG---DCIKWEPFYLCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 275 ---~~~l~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 330 (961)
.....+..++.+.. +-=|||||++-.. ...+.+.+...+.....+.-||+|.|+..
T Consensus 77 ~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 77 IAAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223334444544 4459999998432 33466778888887777889999999865
No 237
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.69 E-value=0.0037 Score=70.20 Aligned_cols=189 Identities=16% Similarity=0.146 Sum_probs=113.7
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
+++||-+.-...|...+.... -..-....|+-|+||||+|+-++.-.- |.-| ....++..=...++|-
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalN------C~~~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALN------CENG-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhc------CCCC-CCCCcchhhhhhHhhh
Confidence 357999988888888887432 234567899999999999998876421 1111 1111111111112221
Q ss_pred HH-----cCCCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-h-
Q 002132 263 EA-----LGIPSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-V- 331 (961)
Q Consensus 263 ~~-----l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~- 331 (961)
.. +..+......+++..+.+.+. .++|-=+.|+|+|+-.+...|..+...+.......+.|+.|.+.. +
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 11 001111112233333333222 235556899999988877889999988887777777777777654 2
Q ss_pred hhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch
Q 002132 332 ASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL 389 (961)
Q Consensus 332 ~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 389 (961)
....+.. +.|.++.++.++-...+...+..+.-. ..++....|++...|...
T Consensus 164 ~TIlSRc--q~f~fkri~~~~I~~~L~~i~~~E~I~----~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRC--QRFDFKRLDLEEIAKHLAAILDKEGIN----IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhcc--ccccccCCCHHHHHHHHHHHHHhcCCc----cCHHHHHHHHHHcCCChh
Confidence 2223333 789999999999998888877433322 224456677777777654
No 238
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.66 E-value=0.0083 Score=61.63 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=36.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRV 257 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 257 (961)
.-.++.|+|.+|+|||++|.+++... ...-..++|++.. .++.+.+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 45799999999999999999998753 3345678999988 5655544
No 239
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.014 Score=60.96 Aligned_cols=191 Identities=16% Similarity=0.091 Sum_probs=105.0
Q ss_pred CceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
..+=|-++.+++|.+.+.-+-.. +=...+=|.+||++|.|||-||++|++. .... |+.|...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~At-----FIrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDAT-----FIRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCce-----EEEeccH----
Confidence 34567788888887766433210 0123456789999999999999999994 3333 3333321
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC-ceEEEEEeCCCCCC-----------cc---ChhhhHHhhhCC--CC
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITG-KRFLLVLDDVWDGD-----------CI---KWEPFYLCLKNG--LH 318 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~~--~~ 318 (961)
++.+..- .+...+.+.+.+.-+. ...+|++|.++... .+ ..-++...+... ..
T Consensus 220 ----ElVqKYi------GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ----ELVQKYI------GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred ----HHHHHHh------ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 2222221 2234566666666554 47899999885321 00 122222222221 24
Q ss_pred CcEEEEEccchhhhhhhc--cC-CcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc----hhH
Q 002132 319 GSKILVTTRKKSVASMMG--ST-DTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP----LAA 391 (961)
Q Consensus 319 gs~iivTtR~~~~~~~~~--~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P----Lai 391 (961)
.-|||.+|...++....- .+ -.+.++++.-+.+.-.++|+-++-. -...+.-++ +.|++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd~----e~la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVDL----ELLARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcCH----HHHHHhcCCCchHHHHHH
Confidence 579999888776543321 11 1256788755555556677665522 222222333 35556665543 455
Q ss_pred HHHHHhhc
Q 002132 392 KTIGSLMR 399 (961)
Q Consensus 392 ~~~~~~l~ 399 (961)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 55566554
No 240
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.60 E-value=0.0095 Score=62.28 Aligned_cols=136 Identities=24% Similarity=0.274 Sum_probs=75.3
Q ss_pred ecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcch-hhHhcCCeEEEE----EeCCcc-----cHH
Q 002132 186 CGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHV-EVKRKFDKLLWV----CVSDPF-----EQF 255 (961)
Q Consensus 186 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv----~~s~~~-----~~~ 255 (961)
-+|..+..--+++|. ++.+..|.+.|.+|.|||.||-+..-.. ..++.|..++-. .+++.. +.+
T Consensus 227 ~prn~eQ~~ALdlLl------d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLL------DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhc------CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 346667666778887 4568999999999999999997654432 223444432211 122211 111
Q ss_pred ----HHHHHHHHHcCCCCC-CCCCHHHHHHHHH---------HHhCCc---eEEEEEeCCCCCCccChhhhHHhhhCCCC
Q 002132 256 ----RVAKAIAEALGIPSS-NLGEFQSLLKLIS---------ESITGK---RFLLVLDDVWDGDCIKWEPFYLCLKNGLH 318 (961)
Q Consensus 256 ----~~~~~i~~~l~~~~~-~~~~~~~l~~~l~---------~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 318 (961)
-..+.|.+.+..-.. +....+.+...+. .+.+|+ +-+||+|.+.+.. -.++...+...+.
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT---pheikTiltR~G~ 377 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT---PHELKTILTRAGE 377 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC---HHHHHHHHHhccC
Confidence 122223222211111 1011111111111 234555 4599999998764 3566677777889
Q ss_pred CcEEEEEccchh
Q 002132 319 GSKILVTTRKKS 330 (961)
Q Consensus 319 gs~iivTtR~~~ 330 (961)
||||+.|--..+
T Consensus 378 GsKIVl~gd~aQ 389 (436)
T COG1875 378 GSKIVLTGDPAQ 389 (436)
T ss_pred CCEEEEcCCHHH
Confidence 999999875543
No 241
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.59 E-value=0.0039 Score=61.24 Aligned_cols=37 Identities=30% Similarity=0.506 Sum_probs=29.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEE
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVC 247 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 247 (961)
...+|.+.|+.|+||||+|+.+++. ....+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 4469999999999999999999984 455566666653
No 242
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.55 E-value=0.0083 Score=68.17 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=61.2
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Q 002132 207 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESI 286 (961)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 286 (961)
.+.-+++.++|++|+||||||.-++++. -..++-|++|+..+...+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa-----GYsVvEINASDeRt~~~v~~kI~~avq~~s---------------~l 382 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA-----GYSVVEINASDERTAPMVKEKIENAVQNHS---------------VL 382 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc-----CceEEEecccccccHHHHHHHHHHHHhhcc---------------cc
Confidence 3456899999999999999999998842 235888899998877766666655543221 22
Q ss_pred C--CceEEEEEeCCCCCCccChhhhHHhhh
Q 002132 287 T--GKRFLLVLDDVWDGDCIKWEPFYLCLK 314 (961)
Q Consensus 287 ~--~kr~LlVlDdv~~~~~~~~~~l~~~l~ 314 (961)
. ++..-||+|.++-......+.+.+.+.
T Consensus 383 ~adsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred ccCCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2 677889999997654333444544443
No 243
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.045 Score=60.00 Aligned_cols=152 Identities=23% Similarity=0.323 Sum_probs=89.6
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Q 002132 207 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESI 286 (961)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 286 (961)
...+.-+.+.|++|+|||+||..++.. ..|..+--++- +++ ++. ........+.....+..
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSp------e~m-------iG~--sEsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISP------EDM-------IGL--SESAKCAHIKKIFEDAY 595 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeCh------HHc-------cCc--cHHHHHHHHHHHHHHhh
Confidence 346677889999999999999999874 56764433321 111 011 11112233444455666
Q ss_pred CCceEEEEEeCCCCCCccChhhh------------HHhhhC-CCCCcE--EEEEccchhhhhhhccCC--cceEEcCCCC
Q 002132 287 TGKRFLLVLDDVWDGDCIKWEPF------------YLCLKN-GLHGSK--ILVTTRKKSVASMMGSTD--TDIITVMELT 349 (961)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~~~l------------~~~l~~-~~~gs~--iivTtR~~~~~~~~~~~~--~~~~~l~~L~ 349 (961)
++.--.||+||+... .+|-.+ .-.+.. ...|-| |+-||....+.+.|+... ...|.++.++
T Consensus 596 kS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 777789999999543 234333 222222 123444 455777778887776542 2578999998
Q ss_pred H-HHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhc
Q 002132 350 E-EECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKF 384 (961)
Q Consensus 350 ~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c 384 (961)
. ++..+.+...-. -.+.....++++...+|
T Consensus 674 ~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 7 777777766431 12234455666666666
No 244
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.53 E-value=0.014 Score=56.47 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=30.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCccc
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFE 253 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 253 (961)
++.|+|.+|+||||+++.++... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998853 33445688888776544
No 245
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.51 E-value=0.01 Score=58.92 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=54.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHHHHHHcCCCCC---CCCCH-HHHHHHHHHH
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKAIAEALGIPSS---NLGEF-QSLLKLISES 285 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~---~~~~~-~~l~~~l~~~ 285 (961)
+|+.++|+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++.+.. ...+. +.+.+.+.+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 789999999999999998888754333 45677777653 34566778888888886532 22222 3333334443
Q ss_pred hCCceEEEEEeCCCC
Q 002132 286 ITGKRFLLVLDDVWD 300 (961)
Q Consensus 286 l~~kr~LlVlDdv~~ 300 (961)
-.++.=+|++|-...
T Consensus 80 ~~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGR 94 (196)
T ss_dssp HHTTSSEEEEEE-SS
T ss_pred hhcCCCEEEEecCCc
Confidence 223334788887643
No 246
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.50 E-value=0.0051 Score=59.35 Aligned_cols=131 Identities=19% Similarity=0.148 Sum_probs=68.5
Q ss_pred eecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHH
Q 002132 185 ICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEA 264 (961)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 264 (961)
++|.+..+.++++.+..... ... -|.|+|..|+||+.+|+.+.+.- ...-...+-|+++.- +.+.+-.++.-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~~-pVlI~GE~GtGK~~lA~~IH~~s--~r~~~pfi~vnc~~~-~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SDL-PVLITGETGTGKELLARAIHNNS--PRKNGPFISVNCAAL-PEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---STS--EEEECSTTSSHHHHHHHHHHCS--TTTTS-EEEEETTTS--HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC---CCC-CEEEEcCCCCcHHHHHHHHHHhh--hcccCCeEEEehhhh-hcchhhhhhhcc
Confidence 46888888888887765543 233 45699999999999999999842 112223444555532 333333333322
Q ss_pred cCCCCCCCC--CHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCC------C-----CCcEEEEEccch
Q 002132 265 LGIPSSNLG--EFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNG------L-----HGSKILVTTRKK 329 (961)
Q Consensus 265 l~~~~~~~~--~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs~iivTtR~~ 329 (961)
-.....+.. ... .+... ..=-|+||++.......-..+...+..+ . ...|||.||...
T Consensus 74 ~~~~~~~~~~~~~G----~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDKKG----LLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEBEH----HHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccccCC----ceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 111111110 111 12222 2236889999887655445566666532 1 246888888754
No 247
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.50 E-value=0.0098 Score=63.30 Aligned_cols=84 Identities=25% Similarity=0.276 Sum_probs=57.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCC-----CCCCCHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPS-----SNLGEFQSLLKLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 283 (961)
.-+++-|+|++|+||||||.+++.. ....-..++|++..+.+++. .+++++... ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 5579999999999999999998874 33445678999988877753 344554431 11123455555555
Q ss_pred HHhC-CceEEEEEeCCC
Q 002132 284 ESIT-GKRFLLVLDDVW 299 (961)
Q Consensus 284 ~~l~-~kr~LlVlDdv~ 299 (961)
...+ +.--+||+|.|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 5554 445689999974
No 248
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.00019 Score=71.37 Aligned_cols=99 Identities=25% Similarity=0.341 Sum_probs=54.4
Q ss_pred CceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccch--hhhcccC
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPE--GIGKLIN 677 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~ 677 (961)
.+.+-|+++||. +.++ +.+.+++.|+.|.|+-|.|+.|- .+..+.+|+.|+|+.|. +..+-+ .+.+|++
T Consensus 19 ~~vkKLNcwg~~------L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlps 89 (388)
T KOG2123|consen 19 ENVKKLNCWGCG------LDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPS 89 (388)
T ss_pred HHhhhhcccCCC------ccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCch
Confidence 344556666665 4443 22345666666666666666653 25666666666666665 443322 3456667
Q ss_pred CceeecCCcccccccccc-----CCCCCCCCcCCc
Q 002132 678 MKHLLNYRTDSLRYMPVG-----IGRLTGLRTLDE 707 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~~-----i~~L~~L~~L~~ 707 (961)
||.|.+..|.....-+.. +.-|++|+.|+.
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 777777666443332222 344556665553
No 249
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.46 E-value=0.015 Score=59.46 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=33.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCccc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFE 253 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 253 (961)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 45899999999999999999998743 33345688888766554
No 250
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.45 E-value=0.014 Score=61.93 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=51.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc-cHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF-EQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
+.+++.|+|+.|+||||++..++.....+..-..+..|+..... ...+.+....+.++.+.....+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 45799999999999999999998854322111346666654321 223344444555555443334444555444443 3
Q ss_pred CceEEEEEeCC
Q 002132 288 GKRFLLVLDDV 298 (961)
Q Consensus 288 ~kr~LlVlDdv 298 (961)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777754
No 251
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.43 E-value=0.019 Score=59.10 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=54.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcC------CeEEEEEeCCcccHHHHHHHHHHHcCCCC---------CCCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKF------DKLLWVCVSDPFEQFRVAKAIAEALGIPS---------SNLG 273 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~ 273 (961)
.-.++.|+|.+|+|||+||.+++... .... ..++|++....++...+. ++.+...... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 45799999999999999999987642 2222 568999988877765543 3444332211 0112
Q ss_pred CHHHHHHHHHHHhC----CceEEEEEeCCC
Q 002132 274 EFQSLLKLISESIT----GKRFLLVLDDVW 299 (961)
Q Consensus 274 ~~~~l~~~l~~~l~----~kr~LlVlDdv~ 299 (961)
+.+++...+.+..+ .+--++|+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 34444444444432 344588888874
No 252
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.41 E-value=0.002 Score=60.34 Aligned_cols=108 Identities=16% Similarity=0.105 Sum_probs=63.1
Q ss_pred ecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhh-HhcCCeEEEEEeCCcccHHHHHHHHHHH
Q 002132 186 CGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV-KRKFDKLLWVCVSDPFEQFRVAKAIAEA 264 (961)
Q Consensus 186 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 264 (961)
||+...++++.+.+..-.. ....|.|+|..|+||+++|+.++..... ...|.. +..... . .++++
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~-~-----~~~l~- 66 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASL-P-----AELLE- 66 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCT-C-----HHHHH-
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhC-c-----HHHHH-
Confidence 5777777777776654332 2245689999999999999988874311 111111 011110 0 11111
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCC-CCCcEEEEEccch
Q 002132 265 LGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNG-LHGSKILVTTRKK 329 (961)
Q Consensus 265 l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~~ 329 (961)
+ .+.--|+|+|++..+......+...+... ....|+|.||+..
T Consensus 67 -------------------~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 67 -------------------Q---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -------------------H---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -------------------H---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1 13445789999887766667777777643 5678999998865
No 253
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.043 Score=56.43 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=48.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhh--HhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEV--KRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
-++|.++|++|.|||+|++.+++...+ .+.+....-+.++.. .++.....+ ...-+..+.+.|.+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 379999999999999999999997633 344444344443332 122222211 12234556666777776
Q ss_pred Cce--EEEEEeCCC
Q 002132 288 GKR--FLLVLDDVW 299 (961)
Q Consensus 288 ~kr--~LlVlDdv~ 299 (961)
++. +++.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 554 455678884
No 254
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.39 E-value=0.0023 Score=58.42 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
||.|.|++|+||||+|+.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 255
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.38 E-value=0.054 Score=51.56 Aligned_cols=124 Identities=21% Similarity=0.243 Sum_probs=74.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEe---------------------C-------------------
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCV---------------------S------------------- 249 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---------------------s------------------- 249 (961)
-..+.|+|+.|.|||||.+.+|...+. =...+|+.- -
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 368899999999999999999986421 123344421 0
Q ss_pred -----CcccHHHHHHHHHHHcCCCC------CCCCCHHHHHHHHHHHhCCceEEEEEeCCC-CCCc-cChhhhHHhhhCC
Q 002132 250 -----DPFEQFRVAKAIAEALGIPS------SNLGEFQSLLKLISESITGKRFLLVLDDVW-DGDC-IKWEPFYLCLKNG 316 (961)
Q Consensus 250 -----~~~~~~~~~~~i~~~l~~~~------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~-~~~~-~~~~~l~~~l~~~ 316 (961)
.....++-..+.++..+... ...+..++-.-.|.+.+-++.-+|+-|.=- +.+. ..|+-+.-+-.-+
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 01112222333333333321 223344555556778888888999988631 1222 2455444333335
Q ss_pred CCCcEEEEEccchhhhhhhc
Q 002132 317 LHGSKILVTTRKKSVASMMG 336 (961)
Q Consensus 317 ~~gs~iivTtR~~~~~~~~~ 336 (961)
..|+.||++|.+..+-..+.
T Consensus 185 r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 185 RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hcCcEEEEEeccHHHHHhcc
Confidence 67999999999998766654
No 256
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.38 E-value=0.0084 Score=62.41 Aligned_cols=57 Identities=30% Similarity=0.404 Sum_probs=41.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHh----cCCeEEEEEeCCcccHHHHHHHHHHHcCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKR----KFDKLLWVCVSDPFEQFRVAKAIAEALGI 267 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (961)
-.+.=|+|.+|+|||+||.+++-...+.. .-..++|++....|+.+++. +|++..+.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 35899999999999999988875432222 22469999999999988775 57776543
No 257
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.37 E-value=0.035 Score=55.50 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCC------C-CCCCHHHHHHHHHHHhCCceEEEEEeCCC-CCCccChhhhHHhhhCC--CCCcEEEE
Q 002132 255 FRVAKAIAEALGIPS------S-NLGEFQSLLKLISESITGKRFLLVLDDVW-DGDCIKWEPFYLCLKNG--LHGSKILV 324 (961)
Q Consensus 255 ~~~~~~i~~~l~~~~------~-~~~~~~~l~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~iiv 324 (961)
.+....+++.++... + .....++-.-.+.+.+-..+-+|+.|+=- ..+...-+.+...+... ..|..||+
T Consensus 119 ~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~ 198 (226)
T COG1136 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM 198 (226)
T ss_pred HHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEE
Confidence 334455666655531 1 22334455556778888888889999742 22223334455555442 35778999
Q ss_pred Eccchhhhhhhc
Q 002132 325 TTRKKSVASMMG 336 (961)
Q Consensus 325 TtR~~~~~~~~~ 336 (961)
.|.++.+|..+.
T Consensus 199 VTHd~~lA~~~d 210 (226)
T COG1136 199 VTHDPELAKYAD 210 (226)
T ss_pred EcCCHHHHHhCC
Confidence 999999999764
No 258
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.17 Score=53.73 Aligned_cols=157 Identities=10% Similarity=0.053 Sum_probs=91.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch--------hhHhcCCeEEEEEe-CCcccHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV--------EVKRKFDKLLWVCV-SDPFEQFRVAKAIAEALGIPSSNLGEFQSLL 279 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~ 279 (961)
-..+..++|..|.||+++|+.+.+.. ....|-+.+.++.. +....++++ +++.+.+...+
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCC----------
Confidence 34677799999999999999887742 01112222333321 111222221 12222222111
Q ss_pred HHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccch-hhhhh-hccCCcceEEcCCCCHHHHHHHH
Q 002132 280 KLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKK-SVASM-MGSTDTDIITVMELTEEECWSLF 357 (961)
Q Consensus 280 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~~~~~-~~~~~~~~~~l~~L~~~~~~~lf 357 (961)
.-.+.+=++|+|++...+......+...+......+.+|++|.+. .+... .... ..+++.++++++..+.+
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc--~~~~f~~l~~~~l~~~l 158 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRC--QVFNVKEPDQQKILAKL 158 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCe--EEEECCCCCHHHHHHHH
Confidence 011467789999998777667788998998877788777766543 33322 2223 78999999999998887
Q ss_pred HHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHH
Q 002132 358 KRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKT 393 (961)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~ 393 (961)
.... . + .+.++.++...+|.=-|+..
T Consensus 159 ~~~~---~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 159 LSKN---K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHcC---C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 6531 1 1 23355566666662234443
No 259
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.35 E-value=0.015 Score=58.46 Aligned_cols=198 Identities=14% Similarity=0.069 Sum_probs=102.9
Q ss_pred eecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchh----hHhcCCeEEEEEeCCc-ccHHHHHH
Q 002132 185 ICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE----VKRKFDKLLWVCVSDP-FEQFRVAK 259 (961)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~f~~~~wv~~s~~-~~~~~~~~ 259 (961)
+.++++....+..... .+..+-+.++|+.|.||-|.+..+.+..- .+-+-+...|.+-|.. ..+..+-.
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 4555555555555543 23578899999999999999887776431 1122344555543332 00000000
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHh-------C-CceE-EEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh
Q 002132 260 AIAEALGIPSSNLGEFQSLLKLISESI-------T-GKRF-LLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~l~~~l~~~l-------~-~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 330 (961)
.---++..+..+..|---+++.+++.- + .+.| ++|+-.++....+.-..++.....-...+|+|+...+..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~S 168 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTS 168 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcc
Confidence 000000000011111112222222211 1 2344 566666665544444556555554445677776543321
Q ss_pred --hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 331 --VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 331 --~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
+...-... -.+++...+++|....+.+.+-.++-.- + .+++.+|+++++|.-.-...+
T Consensus 169 riIepIrSRC--l~iRvpaps~eeI~~vl~~v~~kE~l~l-p---~~~l~rIa~kS~~nLRrAllm 228 (351)
T KOG2035|consen 169 RIIEPIRSRC--LFIRVPAPSDEEITSVLSKVLKKEGLQL-P---KELLKRIAEKSNRNLRRALLM 228 (351)
T ss_pred cchhHHhhhe--eEEeCCCCCHHHHHHHHHHHHHHhcccC-c---HHHHHHHHHHhcccHHHHHHH
Confidence 22111111 4689999999999999988774433321 1 678999999999875433333
No 260
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.34 E-value=0.024 Score=57.64 Aligned_cols=127 Identities=18% Similarity=0.145 Sum_probs=77.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-----cccHHHHHHHHHHHcCCCC------CCCCCHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-----PFEQFRVAKAIAEALGIPS------SNLGEFQS 277 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~ 277 (961)
+..+++|||..|+||||+++.+..= .+.-.+.++..-.+ .....+-..++++.++... +..-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L---~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL---EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC---cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3468999999999999999999883 23233344443221 2223445666777776542 12222333
Q ss_pred HHH-HHHHHhCCceEEEEEeCCCCCCcc-ChhhhHHhhhC--CCCCcEEEEEccchhhhhhhccC
Q 002132 278 LLK-LISESITGKRFLLVLDDVWDGDCI-KWEPFYLCLKN--GLHGSKILVTTRKKSVASMMGST 338 (961)
Q Consensus 278 l~~-~l~~~l~~kr~LlVlDdv~~~~~~-~~~~l~~~l~~--~~~gs~iivTtR~~~~~~~~~~~ 338 (961)
.++ .+.+.|.-+.-++|.|..-..-+. .-..+...+.+ ...|-..++.|-+-.++..++..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence 333 466788888999999987543211 11223333332 23566788888888888877653
No 261
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.34 E-value=0.012 Score=60.88 Aligned_cols=56 Identities=27% Similarity=0.299 Sum_probs=39.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhc----CCeEEEEEeCCcccHHHHHHHHHHHc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRK----FDKLLWVCVSDPFEQFRVAKAIAEAL 265 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l 265 (961)
.-.++.|+|.+|+|||+||.+++-....... ...++|++....++.+++. ++++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~ 77 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERF 77 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHh
Confidence 4579999999999999999999753222221 3679999998877765443 344443
No 262
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.32 E-value=0.016 Score=62.14 Aligned_cols=59 Identities=25% Similarity=0.402 Sum_probs=43.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhH----hcCCeEEEEEeCCcccHHHHHHHHHHHcCCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVK----RKFDKLLWVCVSDPFEQFRVAKAIAEALGIP 268 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (961)
.-.++-|+|.+|+|||+|+.+++-..... ..-..++||+....|+++++. ++++.++..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 45799999999999999998876432221 112479999999999988865 466776543
No 263
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.32 E-value=0.014 Score=62.01 Aligned_cols=84 Identities=24% Similarity=0.262 Sum_probs=57.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCC-----CCCCCHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPS-----SNLGEFQSLLKLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 283 (961)
.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++... ......++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 5589999999999999999998774 33444668899888876653 355555431 11123455555555
Q ss_pred HHhC-CceEEEEEeCCC
Q 002132 284 ESIT-GKRFLLVLDDVW 299 (961)
Q Consensus 284 ~~l~-~kr~LlVlDdv~ 299 (961)
...+ +.--+||+|.+.
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 5554 456699999985
No 264
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.016 Score=68.07 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=86.1
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC-----CeEEEEEeCCcccHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF-----DKLLWVCVSDPFEQFRV 257 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-----~~~~wv~~s~~~~~~~~ 257 (961)
..++||++|+.++++.|..... .-+ .++|.+|||||++|.-++... +.+.- +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s----------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS----------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----------
Confidence 4589999999999999987653 122 478999999999987766632 11110 111111
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCCC----C----ccChhh-hHHhhhCCCCCcEEEEEcc
Q 002132 258 AKAIAEALGIPSSNLGEFQSLLKLISESI-TGKRFLLVLDDVWDG----D----CIKWEP-FYLCLKNGLHGSKILVTTR 327 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~----~----~~~~~~-l~~~l~~~~~gs~iivTtR 327 (961)
-+|..-..+... ..+.++..+.+.+.+ +..+.+|++|.++.. . .-+-.. +...|..+ .--.|-.||-
T Consensus 232 -LD~g~LvAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~ 308 (786)
T COG0542 232 -LDLGSLVAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTL 308 (786)
T ss_pred -ecHHHHhccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccH
Confidence 011111111111 233444444444444 345899999998652 0 112233 33334333 2233445554
Q ss_pred chhhhhhhcc-----CCcceEEcCCCCHHHHHHHHHHH
Q 002132 328 KKSVASMMGS-----TDTDIITVMELTEEECWSLFKRL 360 (961)
Q Consensus 328 ~~~~~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~ 360 (961)
++ .-..+.. ...+.+.+..-+.+++..+++-.
T Consensus 309 ~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 43 2222111 12378999999999999988654
No 265
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.30 E-value=0.024 Score=61.51 Aligned_cols=134 Identities=12% Similarity=0.057 Sum_probs=74.3
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHH
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAE 263 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 263 (961)
.++|+...+.++.+.+..... ...-|.|+|..|+||+++|+.+...- ...-...+.|++.... ...+...++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s--~r~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhC--CccCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 589999999999888765543 22457899999999999999987631 1111234455555432 2222222221
Q ss_pred HcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEccch
Q 002132 264 ALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTRKK 329 (961)
Q Consensus 264 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 329 (961)
.-......... .....+. ....=.|+||+|..........+...+..+. ...|||.||...
T Consensus 80 ~~~~~~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 80 HEAGAFTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ccccccCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 10000000000 0000111 1122358899998876666677777765432 135888887653
No 266
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.29 E-value=0.04 Score=53.68 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=76.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeC-------------------Ccc------------------
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVS-------------------DPF------------------ 252 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-------------------~~~------------------ 252 (961)
-.|++|+|+.|+|||||.+.+..- ...=++.+|+.-. +.|
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 368999999999999999987653 2222345555321 111
Q ss_pred -------cHHHHHHHHHHHcCCCC------CCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhC-CC
Q 002132 253 -------EQFRVAKAIAEALGIPS------SNLGEFQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKN-GL 317 (961)
Q Consensus 253 -------~~~~~~~~i~~~l~~~~------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~ 317 (961)
..++...++++.++... ...+..++-.-.|.+.|.-++-++.+|..-+. |++...++...+.. ..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 12344444555555432 12233444455677888888889999998553 33333444444443 34
Q ss_pred CCcEEEEEccchhhhhhhcc
Q 002132 318 HGSKILVTTRKKSVASMMGS 337 (961)
Q Consensus 318 ~gs~iivTtR~~~~~~~~~~ 337 (961)
.|-..|+.|.....|..+..
T Consensus 185 eGmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred cCCeEEEEechhHHHHHhhh
Confidence 67778888888888877654
No 267
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.28 E-value=0.037 Score=54.49 Aligned_cols=120 Identities=17% Similarity=0.231 Sum_probs=67.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEE---eCCcccHHHH------HHHHHHHcCCCC------CCCCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVC---VSDPFEQFRV------AKAIAEALGIPS------SNLGE 274 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~------~~~i~~~l~~~~------~~~~~ 274 (961)
-.+++|+|..|.|||||++.++... ......+++. +.. .+.... ..++++.++... .....
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3689999999999999999998742 2334444443 211 122111 112455554431 11122
Q ss_pred HHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCC-C-CcEEEEEccchhhhh
Q 002132 275 FQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGL-H-GSKILVTTRKKSVAS 333 (961)
Q Consensus 275 ~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~-~-gs~iivTtR~~~~~~ 333 (961)
.+...-.+.+.+-...-++++|+-... +....+.+...+..-. . +..||++|.+.....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 223333455666677889999987532 3334445555554322 2 667888888776543
No 268
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.029 Score=61.61 Aligned_cols=91 Identities=19% Similarity=0.281 Sum_probs=57.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhH--hcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVK--RKFDKLLWVCVSDP-FEQFRVAKAIAEALGIPSSNLGEFQSLLKLISES 285 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~ 285 (961)
..++|.++|+.|+||||.+.+++...... .+-..+..+++... ....+-++..++.++.+.......+.+...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35799999999999999999998754322 12234566665542 2233346666777766544444455555555543
Q ss_pred hCCceEEEEEeCCCCC
Q 002132 286 ITGKRFLLVLDDVWDG 301 (961)
Q Consensus 286 l~~kr~LlVlDdv~~~ 301 (961)
...-+|++|.+...
T Consensus 253 --~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 --KDFDLVLVDTIGKS 266 (388)
T ss_pred --CCCCEEEEcCCCCC
Confidence 34568899998654
No 269
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.27 E-value=0.05 Score=61.04 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=52.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc-cHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF-EQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITG 288 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 288 (961)
.+++.++|++|+||||++.+++........-..+..|+..... ...+-++...+.++.+.....+...+...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 3689999999999999999887743212233457777764421 122334444555555443334445555555443 3
Q ss_pred ceEEEEEeCCCC
Q 002132 289 KRFLLVLDDVWD 300 (961)
Q Consensus 289 kr~LlVlDdv~~ 300 (961)
..=+|++|....
T Consensus 299 ~~DlVlIDt~G~ 310 (424)
T PRK05703 299 DCDVILIDTAGR 310 (424)
T ss_pred CCCEEEEeCCCC
Confidence 346788997644
No 270
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.016 Score=63.08 Aligned_cols=90 Identities=14% Similarity=0.248 Sum_probs=54.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITG 288 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 288 (961)
..++.++|+.|+||||++.+++.....+.....+..++... .....+-++...+.++.+.....+...+...+. .+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcC
Confidence 46899999999999999999988532221223566665433 234455666667777765433333333433333 3445
Q ss_pred ceEEEEEeCCCCC
Q 002132 289 KRFLLVLDDVWDG 301 (961)
Q Consensus 289 kr~LlVlDdv~~~ 301 (961)
+ -++++|.....
T Consensus 216 ~-DlVLIDTaG~~ 227 (374)
T PRK14722 216 K-HMVLIDTIGMS 227 (374)
T ss_pred C-CEEEEcCCCCC
Confidence 4 45669988543
No 271
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.027 Score=61.74 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=46.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
...++.++|++|+||||++.+++........+ .+..++... .......++..++.++.+.....+...+...+. .
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---R 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH---h
Confidence 34789999999999999999998743222222 333343322 112234455555555554322222233333222 1
Q ss_pred CceEEEEEeCC
Q 002132 288 GKRFLLVLDDV 298 (961)
Q Consensus 288 ~kr~LlVlDdv 298 (961)
...=+||+|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 22345888954
No 272
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.25 E-value=0.025 Score=58.53 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcC-CeEEEEEeCCc-ccHHHHHHHHHHHcCCC-------CCCCCCHHHH--
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKF-DKLLWVCVSDP-FEQFRVAKAIAEALGIP-------SSNLGEFQSL-- 278 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~l-- 278 (961)
-+.++|+|..|+|||||++.+++. ++.+| +.++++-+... .++.++..++...-... ..+.....+.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 356899999999999999999995 44455 45666666654 34556666655432111 1111111111
Q ss_pred ---HHHHHHHh---CCceEEEEEeCCC
Q 002132 279 ---LKLISESI---TGKRFLLVLDDVW 299 (961)
Q Consensus 279 ---~~~l~~~l---~~kr~LlVlDdv~ 299 (961)
.-.+.+++ +++.+|+|+||+.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 11233444 3899999999983
No 273
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.25 E-value=0.027 Score=68.72 Aligned_cols=181 Identities=13% Similarity=0.082 Sum_probs=92.6
Q ss_pred CceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
.++.|.+..++++.+++...-.. .-...+-+.++|++|+|||+||+.+++.. ...| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecH------
Confidence 35889999999888776422100 01123568899999999999999998842 2222 222211
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCcc-----------ChhhhHHhhhCC-CCCcEEE
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCI-----------KWEPFYLCLKNG-LHGSKIL 323 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~~-~~gs~ii 323 (961)
++. .... ......+...+.........+|++|+++..... ....+...+... ..+..++
T Consensus 247 ~i~----~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EIM----SKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HHh----cccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 111 1100 011122333344444556789999998542100 112233333221 2333444
Q ss_pred E-Eccchh-hhhhhcc--CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc
Q 002132 324 V-TTRKKS-VASMMGS--TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP 388 (961)
Q Consensus 324 v-TtR~~~-~~~~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 388 (961)
| ||.... +...+.. .-...+.+...+.++-.++++...-... .... .....+++.+.|.-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Cccc----cCHHHHHHhCCCCC
Confidence 4 444332 1111111 0014577888888888888886542211 1111 12456777787764
No 274
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.24 E-value=0.034 Score=52.39 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=60.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
.+++|+|..|.|||||++.+.... ......+|+.-.. .+..- .+....+...-.+.+.+-.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~-~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYF-EQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEE-ccCCHHHHHHHHHHHHHhcCC
Confidence 688999999999999999998743 2223444442100 00000 001222222333455666677
Q ss_pred EEEEEeCCCC-CCccChhhhHHhhhCCCCCcEEEEEccchhhhhh
Q 002132 291 FLLVLDDVWD-GDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASM 334 (961)
Q Consensus 291 ~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~ 334 (961)
-++++|+-.. .+......+...+... +..||++|.+......
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 7899998753 2333445555555543 2468888877665543
No 275
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.24 E-value=0.09 Score=56.16 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
.....++|||++|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356889999999999999999999953
No 276
>PTZ00494 tuzin-like protein; Provisional
Probab=96.22 E-value=0.68 Score=50.37 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=107.5
Q ss_pred cCCCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHH
Q 002132 179 LIDEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVA 258 (961)
Q Consensus 179 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (961)
......+|.|++|...+.+.|...+. ...+++.+.|.-|.||++|.+.....+ --..++|++... ++-+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE-----~~paV~VDVRg~---EDtL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVE-----GVALVHVDVGGT---EDTL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHc-----CCCeEEEEecCC---cchH
Confidence 34566799999999888888877663 478999999999999999999887742 235678887764 3568
Q ss_pred HHHHHHcCCCCCCC-CC-HHHHHH---HHHHHhCCceEEEEEeCCCCCCccChhhhH---HhhhCCCCCcEEEEEccchh
Q 002132 259 KAIAEALGIPSSNL-GE-FQSLLK---LISESITGKRFLLVLDDVWDGDCIKWEPFY---LCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 259 ~~i~~~l~~~~~~~-~~-~~~l~~---~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~---~~l~~~~~gs~iivTtR~~~ 330 (961)
+.+.+.++.+..+. .| ++-+.+ .-+....++.-+||+-==.-. +...+. ..|.....-+.|++---.+.
T Consensus 436 rsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGs---sL~RVYnE~vaLacDrRlCHvv~EVplES 512 (664)
T PTZ00494 436 RSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGS---DLGRVYGEVVSLVSDCQACHIVLAVPMKA 512 (664)
T ss_pred HHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCC---cHHHHHHHHHHHHccchhheeeeechHhh
Confidence 88999998876432 22 222222 222334566667776422111 112211 12333445567776554443
Q ss_pred hhhhhccC-CcceEEcCCCCHHHHHHHHHHHH
Q 002132 331 VASMMGST-DTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 331 ~~~~~~~~-~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
+....... ....|.+++++.++|.++-.+..
T Consensus 513 LT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 513 LTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 32221111 12579999999999999987764
No 277
>PRK14974 cell division protein FtsY; Provisional
Probab=96.21 E-value=0.06 Score=58.00 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=50.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc--cHHHHHHHHHHHcCCCCCC---CCCHHH-HHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF--EQFRVAKAIAEALGIPSSN---LGEFQS-LLKLI 282 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~---~~~~~~-l~~~l 282 (961)
+..+|.++|++|+||||++.+++.... ...+ .++.+... .+ ...+-++..++.++.+... ..+... ....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 468999999999999999998887432 2223 34444432 22 2334456667777654321 122222 22333
Q ss_pred HHHh-CCceEEEEEeCCCCC
Q 002132 283 SESI-TGKRFLLVLDDVWDG 301 (961)
Q Consensus 283 ~~~l-~~kr~LlVlDdv~~~ 301 (961)
.... .+.. +|++|-....
T Consensus 216 ~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCC-EEEEECCCcc
Confidence 3222 2333 8999988654
No 278
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.20 E-value=0.026 Score=58.39 Aligned_cols=86 Identities=24% Similarity=0.262 Sum_probs=55.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC------------------
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS------------------ 270 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------------ 270 (961)
.-.++.|+|.+|+|||+||.++.... . ..-..++|++.... +.++.+.+ ++++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~-~-~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA-L-KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH-H-hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 45789999999999999999986632 2 23457899988764 34555543 33332110
Q ss_pred --CCCCHHHHHHHHHHHhCC-ceEEEEEeCCC
Q 002132 271 --NLGEFQSLLKLISESITG-KRFLLVLDDVW 299 (961)
Q Consensus 271 --~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~ 299 (961)
.....+.+...+.+.+.. +.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 112335566666666653 45589999975
No 279
>PRK09354 recA recombinase A; Provisional
Probab=96.18 E-value=0.021 Score=61.39 Aligned_cols=84 Identities=24% Similarity=0.267 Sum_probs=58.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCC-----CCCCCHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPS-----SNLGEFQSLLKLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~l~~~l~ 283 (961)
.-+++-|+|++|+||||||.+++.. ....-..++|++..+.+++. .+++++... ......++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 5689999999999999999998874 33445678999998887763 455555431 11123455555555
Q ss_pred HHhC-CceEEEEEeCCC
Q 002132 284 ESIT-GKRFLLVLDDVW 299 (961)
Q Consensus 284 ~~l~-~kr~LlVlDdv~ 299 (961)
..++ +.--+||+|.|-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 5554 445689999985
No 280
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.16 E-value=0.0033 Score=70.70 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=40.9
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+++|.++.++++++.|.....+...+-+++.++|++|+||||||+.+++-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999994332222345689999999999999999999984
No 281
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.14 E-value=0.015 Score=54.78 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 002132 212 IISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (961)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999886
No 282
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.13 E-value=0.0064 Score=60.65 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=53.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh----
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESI---- 286 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l---- 286 (961)
+++.|.|.+|.||||+++.+.... ...- ..+.+......-... +.+..+... ..+.. .+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~--~~~g-~~v~~~apT~~Aa~~----L~~~~~~~a---~Ti~~---~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEAL--EAAG-KRVIGLAPTNKAAKE----LREKTGIEA---QTIHS---FLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHH--HHTT---EEEEESSHHHHHH----HHHHHTS-E---EEHHH---HTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHH--HhCC-CeEEEECCcHHHHHH----HHHhhCcch---hhHHH---HHhcCCcccc
Confidence 678899999999999999988743 3332 333333333322222 333332211 11111 111000
Q ss_pred -----CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccch
Q 002132 287 -----TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKK 329 (961)
Q Consensus 287 -----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 329 (961)
..++-+||+|++.-.+...+..+...... .|+|+|+.-=..
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12335999999987765566666655554 477888765443
No 283
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.026 Score=63.48 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=50.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
...+|.|+|.+|+||||++.+++.....+.....+..++.... ....+.++...+.++.......+...+...+.+. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 4579999999999999999988874322222334555554321 1122333333344443333333344455444433 3
Q ss_pred CceEEEEEeCCCC
Q 002132 288 GKRFLLVLDDVWD 300 (961)
Q Consensus 288 ~kr~LlVlDdv~~ 300 (961)
+ .=+|++|....
T Consensus 428 ~-~DLVLIDTaG~ 439 (559)
T PRK12727 428 D-YKLVLIDTAGM 439 (559)
T ss_pred c-CCEEEecCCCc
Confidence 3 45888888754
No 284
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.09 E-value=0.033 Score=59.89 Aligned_cols=58 Identities=28% Similarity=0.261 Sum_probs=41.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHh----cCCeEEEEEeCCcccHHHHHHHHHHHcCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKR----KFDKLLWVCVSDPFEQFRVAKAIAEALGI 267 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (961)
...++.|+|.+|+|||||+..++....... .-..++|++....+++++ +.++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 468999999999999999998876322211 113579999988888876 4445666544
No 285
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.08 E-value=0.089 Score=49.03 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHhHhhhHhHH
Q 002132 2 VDAIVSPLVEQLISFVAKEIKQQVKLVIGVEKEVKGITSHLRAIRAVLDDAEEKQV-KDEAVRLWLGRLKYASYDIEDVL 80 (961)
Q Consensus 2 a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~lr~~~~d~ed~l 80 (961)
|+.+.+++++.+++.+...+.+.......++.-.++|...++.|..++++.+.... -+..-+.-++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999999999999886432 12222667888888899999998
Q ss_pred HHHH
Q 002132 81 DEWI 84 (961)
Q Consensus 81 D~~~ 84 (961)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8875
No 286
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.08 E-value=0.033 Score=60.14 Aligned_cols=59 Identities=25% Similarity=0.324 Sum_probs=44.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhH----hcCCeEEEEEeCCcccHHHHHHHHHHHcCCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVK----RKFDKLLWVCVSDPFEQFRVAKAIAEALGIP 268 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (961)
.-.+.-|+|.+|+|||+|+.+++-..... ..-..++||+....|+++++.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 45788999999999999999886433221 1124799999999999888654 66666544
No 287
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.07 E-value=0.049 Score=62.37 Aligned_cols=60 Identities=23% Similarity=0.296 Sum_probs=44.6
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEE
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVC 247 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 247 (961)
.+++--.+-++++..||...-.+ ....+++.+.|++|+||||.++.+++.. .|+.+-|.+
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~-~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSG-SSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhcc-CCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 34555567788888888754321 2345799999999999999999999853 577777875
No 288
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.07 E-value=0.0031 Score=63.00 Aligned_cols=60 Identities=27% Similarity=0.256 Sum_probs=36.0
Q ss_pred ccCccceEEecCC--ccc-ccchhhhccCCCcEEeecCccc--ccccchhhhcccCCceeecCCcc
Q 002132 627 KLVHLRYLNLSCQ--NIR-KLPETLCELYNLEKLYITRCLY--LEELPEGIGKLINMKHLLNYRTD 687 (961)
Q Consensus 627 ~L~~Lr~L~L~~~--~i~-~Lp~~i~~L~~L~~L~L~~~~~--l~~lp~~i~~L~~L~~L~l~~~~ 687 (961)
.|++|++|.+++| .+. .++....++++|++|++++|++ ++.++. +.++.+|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCC
Confidence 5667777777777 333 4555555667777777777762 122222 4556666677776664
No 289
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.06 E-value=0.096 Score=63.92 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=92.8
Q ss_pred CceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
.++.|.+..++.+.+.+.-.-.. .-...+-+.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEehH----
Confidence 45778888777777665421100 01123457899999999999999999842 2222 222211
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCC------cc-C-----hhhhHHhhhC--CCCCcE
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGD------CI-K-----WEPFYLCLKN--GLHGSK 321 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~------~~-~-----~~~l~~~l~~--~~~gs~ 321 (961)
+ ++....+ .....+...+...-.....+|++|+++... .. . ...+...+.. ...+.-
T Consensus 522 ~----l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 E----ILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred H----HhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1 1111111 111222333333334567999999985421 00 1 1112222322 123445
Q ss_pred EEEEccchhhhhhhcc---CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc
Q 002132 322 ILVTTRKKSVASMMGS---TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP 388 (961)
Q Consensus 322 iivTtR~~~~~~~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 388 (961)
||.||...+.....-. .-...+.+...+.++-.++|+....+.. .....+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHcCCCC
Confidence 6667765543221111 1125688888899999999876653211 111122 345666676643
No 290
>PRK06696 uridine kinase; Validated
Probab=96.06 E-value=0.015 Score=59.41 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=34.5
Q ss_pred ccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 188 RVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
|.+-+++|.+.+.... .++..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5666777877776533 236789999999999999999999984
No 291
>PRK13695 putative NTPase; Provisional
Probab=96.05 E-value=0.011 Score=57.88 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcch
Q 002132 212 IISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
.|+|.|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998753
No 292
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.04 E-value=0.028 Score=60.97 Aligned_cols=132 Identities=14% Similarity=0.068 Sum_probs=69.7
Q ss_pred eecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHH
Q 002132 185 ICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEA 264 (961)
Q Consensus 185 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 264 (961)
++|+...+.++.+.+..... .-.-|.|+|..|+||+++|+.+.+.- ...-...+-|++.... ...+-..+.-.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s--~r~~~pfv~vnc~~~~-~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLS--KRWQGPLVKLNCAALS-ENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhc--CccCCCeEEEeCCCCC-hHHHHHHHhcc
Confidence 46777778877777765442 22447899999999999999987632 1111233445554322 11111222110
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEccc
Q 002132 265 LGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTRK 328 (961)
Q Consensus 265 l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 328 (961)
-.+...+... . ..-.+. ....-.|+||++..........+...+..+. ...|||.||..
T Consensus 74 ~~g~~~ga~~-~-~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 74 EAGAFTGAQK-R-HQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred ccccccCccc-c-cCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 0000000000 0 000011 1223468999998876656666777665432 23488888754
No 293
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.02 E-value=0.037 Score=64.94 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=76.4
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
....++|....+.++.+.+..... ....|.|+|..|+|||++|+.+.+.- ...-...+.|++..-.+ ..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s--~r~~~pfv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLS--PRAKRPFVKVNCAALSE--TLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeecCCCCH--HHHHH
Confidence 445799999999999888765432 22456799999999999999998742 11112345555554322 22221
Q ss_pred HHHHcCCCCCCC-CCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEccc
Q 002132 261 IAEALGIPSSNL-GEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTRK 328 (961)
Q Consensus 261 i~~~l~~~~~~~-~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 328 (961)
.+.+..... ..... ...-..-....-.|+||++..........+...+..+. ...|||.||..
T Consensus 266 ---~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred ---HHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 121111000 00000 00000001223468999998877666777777775432 12588888754
Q ss_pred h
Q 002132 329 K 329 (961)
Q Consensus 329 ~ 329 (961)
.
T Consensus 341 ~ 341 (534)
T TIGR01817 341 D 341 (534)
T ss_pred C
Confidence 3
No 294
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.01 E-value=0.032 Score=54.87 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=61.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCC---------------CCCCCCH
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIP---------------SSNLGEF 275 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~---------------~~~~~~~ 275 (961)
.+++|+|..|.|||||++.++.... .-...+++.-. +.......+-+.++.- .......
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 5799999999999999999987421 12233333211 1111101111111100 0111112
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhh
Q 002132 276 QSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVAS 333 (961)
Q Consensus 276 ~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~ 333 (961)
+...-.+.+.+-.++-++++|+-... +....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 22233355566677789999997543 22333444455543334677888888877654
No 295
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.97 E-value=0.066 Score=59.90 Aligned_cols=88 Identities=23% Similarity=0.208 Sum_probs=51.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCCCCC---CCCHHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIPSSN---LGEFQSLLKLISE 284 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~l~~~l~~ 284 (961)
...+|.++|.+|+||||+|.+++.... ..-..++-|++... ....+.++.++++++.+... ..+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 457899999999999999999998543 33224555554331 22345566677777654321 1232232222223
Q ss_pred HhCCceEEEEEeCCC
Q 002132 285 SITGKRFLLVLDDVW 299 (961)
Q Consensus 285 ~l~~kr~LlVlDdv~ 299 (961)
...+. -+||+|...
T Consensus 172 ~~~~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFKKA-DVIIVDTAG 185 (437)
T ss_pred HhhcC-CEEEEECCC
Confidence 33333 567888774
No 296
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.93 E-value=0.069 Score=60.76 Aligned_cols=133 Identities=15% Similarity=0.096 Sum_probs=69.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
.+-|.++|++|+|||.+|+.+++.. ...| +-+..+. +. ... .+ .....+.+.+...-...
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~~------l~----~~~----vG-ese~~l~~~f~~A~~~~ 318 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVGK------LF----GGI----VG-ESESRMRQMIRIAEALS 318 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhHH------hc----ccc----cC-hHHHHHHHHHHHHHhcC
Confidence 4568899999999999999999843 2121 2222211 11 110 00 11122223333333356
Q ss_pred eEEEEEeCCCCCCc-------c-Chh----hhHHhhhCCCCCcEEEEEccchhhh-hhh-ccC-CcceEEcCCCCHHHHH
Q 002132 290 RFLLVLDDVWDGDC-------I-KWE----PFYLCLKNGLHGSKILVTTRKKSVA-SMM-GST-DTDIITVMELTEEECW 354 (961)
Q Consensus 290 r~LlVlDdv~~~~~-------~-~~~----~l~~~l~~~~~gs~iivTtR~~~~~-~~~-~~~-~~~~~~l~~L~~~~~~ 354 (961)
+++|++|+++..-. . .-. .+...+.....+.-||.||.+.... ..+ ... -...+.+..-+.++-.
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 89999999964210 0 011 1222223333344556677655421 111 111 1256788888899999
Q ss_pred HHHHHHHc
Q 002132 355 SLFKRLAF 362 (961)
Q Consensus 355 ~lf~~~~~ 362 (961)
++|+.+..
T Consensus 399 ~Il~~~l~ 406 (489)
T CHL00195 399 KIFKIHLQ 406 (489)
T ss_pred HHHHHHHh
Confidence 99987764
No 297
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.92 E-value=0.053 Score=52.85 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=58.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEE------eCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVC------VSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISE 284 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~ 284 (961)
.+++|+|..|.|||||++.+..-. ......+++. +.+... ....+...-.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHH
Confidence 689999999999999999988742 2223333322 111110 2222233334555
Q ss_pred HhCCceEEEEEeCCCCC-CccChhhhHHhhhCC-CC-CcEEEEEccchhhhhh
Q 002132 285 SITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LH-GSKILVTTRKKSVASM 334 (961)
Q Consensus 285 ~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~~~~~ 334 (961)
.+..+.-++++|+--.. +......+...+... .. +..||++|.+......
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 66667789999987442 222333344444331 12 2567788877765543
No 298
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.92 E-value=0.004 Score=36.95 Aligned_cols=19 Identities=37% Similarity=0.772 Sum_probs=10.0
Q ss_pred cceEEecCCcccccchhhh
Q 002132 631 LRYLNLSCQNIRKLPETLC 649 (961)
Q Consensus 631 Lr~L~L~~~~i~~Lp~~i~ 649 (961)
|++|+|++|.++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 299
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.91 E-value=0.055 Score=52.89 Aligned_cols=87 Identities=23% Similarity=0.306 Sum_probs=45.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCC---CCCCCCHHHHH-HHHHHHh
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIP---SSNLGEFQSLL-KLISESI 286 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~l~-~~l~~~l 286 (961)
++.++|++|+||||++..++... ...-..++.++.... ....+.+...++..+.+ .....+...+. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~--~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL--KKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998843 233223444554322 12233344444444322 11122333333 3333333
Q ss_pred CCceEEEEEeCCCC
Q 002132 287 TGKRFLLVLDDVWD 300 (961)
Q Consensus 287 ~~kr~LlVlDdv~~ 300 (961)
.+..-++|+|....
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 43333566777644
No 300
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.91 E-value=0.032 Score=57.96 Aligned_cols=89 Identities=21% Similarity=0.169 Sum_probs=58.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHH-cCC---CCC-CCCCHHHHHHHH
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEA-LGI---PSS-NLGEFQSLLKLI 282 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~---~~~-~~~~~~~l~~~l 282 (961)
+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++..+.++++.+.. ++.. +.. ..+ ...+..++...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 36689999999999999999998874 445555899999999999877543 3333 221 111 112222333333
Q ss_pred HHHhCCceEEEEEeCCC
Q 002132 283 SESITGKRFLLVLDDVW 299 (961)
Q Consensus 283 ~~~l~~kr~LlVlDdv~ 299 (961)
.+....+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 34433445689999884
No 301
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.041 Score=53.63 Aligned_cols=117 Identities=18% Similarity=0.153 Sum_probs=61.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc--ccHHHHHHHHHHHcCCC--CCC----------CCCHH
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP--FEQFRVAKAIAEALGIP--SSN----------LGEFQ 276 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~--~~~----------~~~~~ 276 (961)
.+++|+|..|.|||||.+.++.-. ......+++.-... ...... .+.++.- ... ....+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHH
Confidence 689999999999999999998742 22334333321110 011111 1111100 000 11112
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhhh
Q 002132 277 SLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASM 334 (961)
Q Consensus 277 ~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~ 334 (961)
...-.+...+-.+.-++++|+-... +......+...+.....+..||++|.+......
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 2222345556667789999997543 223344455555443335678888888776654
No 302
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.89 E-value=0.00097 Score=77.77 Aligned_cols=34 Identities=29% Similarity=0.242 Sum_probs=20.5
Q ss_pred cCccceEEecCC-cccc--cchhhhccCCCcEEeecC
Q 002132 628 LVHLRYLNLSCQ-NIRK--LPETLCELYNLEKLYITR 661 (961)
Q Consensus 628 L~~Lr~L~L~~~-~i~~--Lp~~i~~L~~L~~L~L~~ 661 (961)
++.|+.|.+..+ .+.. +-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 566666666654 3443 334455667777777766
No 303
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.86 E-value=0.01 Score=57.34 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=43.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCC---CHHHHHHHHHHHhCC
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLG---EFQSLLKLISESITG 288 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~---~~~~l~~~l~~~l~~ 288 (961)
++.|.|.+|+||||+|..+.... . ..++++.-...++. +....|............ ....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~---~~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--G---LQVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--C---CCcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 58999999999999999987632 1 12344444444333 344444333322222111 112244444443333
Q ss_pred ceEEEEEeCC
Q 002132 289 KRFLLVLDDV 298 (961)
Q Consensus 289 kr~LlVlDdv 298 (961)
.. ++|+|.+
T Consensus 77 ~~-~VlID~L 85 (170)
T PRK05800 77 GR-CVLVDCL 85 (170)
T ss_pred CC-EEEehhH
Confidence 22 7888986
No 304
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.85 E-value=0.035 Score=55.58 Aligned_cols=91 Identities=21% Similarity=0.284 Sum_probs=52.8
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEE-------EEeCCcccHHHH--HHHHHHHcCCCCCCC-----
Q 002132 207 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLW-------VCVSDPFEQFRV--AKAIAEALGIPSSNL----- 272 (961)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-------v~~s~~~~~~~~--~~~i~~~l~~~~~~~----- 272 (961)
.++..+|.++||+|.||||..|.++.+...+.....++= |...-+.++++. +++.+++....+.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 345678999999999999999999886533332222221 112334455554 567777776654332
Q ss_pred ----CCHHHHHHHHHHHhCCceEEEEEeCC
Q 002132 273 ----GEFQSLLKLISESITGKRFLLVLDDV 298 (961)
Q Consensus 273 ----~~~~~l~~~l~~~l~~kr~LlVlDdv 298 (961)
...++....+.+.-..-.|. ++|--
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~-liDTP 124 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYV-LIDTP 124 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEE-EEcCC
Confidence 12455555555554444444 44544
No 305
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.83 E-value=0.0049 Score=61.66 Aligned_cols=110 Identities=23% Similarity=0.229 Sum_probs=66.8
Q ss_pred cccCccceEEecCCcccccchhhhccCCCcEEeecCc--ccccccchhhhcccCCceeecCCcccccccccc---CCCCC
Q 002132 626 EKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRC--LYLEELPEGIGKLINMKHLLNYRTDSLRYMPVG---IGRLT 700 (961)
Q Consensus 626 ~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~---i~~L~ 700 (961)
-.+..|++|++.+..++.+- .+-.|++|+.|+++.| .....++.-..++++|++|++++|.+ +. +.. +..+.
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-KD-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-cc-ccccchhhhhc
Confidence 34556677777666655442 2446899999999999 55566776677889999999999963 22 333 34455
Q ss_pred CCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccc
Q 002132 701 GLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIR 739 (961)
Q Consensus 701 ~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~ 739 (961)
+|..|..|.+...+ ...--...|.-+++|+.|+...+.
T Consensus 117 nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred chhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 55566655433322 111111234455666666654443
No 306
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.087 Score=53.64 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=69.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchh-----hH------hcC---CeEEEEEe----CC--cccH----------------
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVE-----VK------RKF---DKLLWVCV----SD--PFEQ---------------- 254 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~-----~~------~~f---~~~~wv~~----s~--~~~~---------------- 254 (961)
.+++|+|+.|.|||||.+.+.--.. +. ... ..+.||.= .. +.++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999877211 00 001 24556542 11 1111
Q ss_pred ------HHHHHHHHHHcCCCCC------CCCCHHHHHHHHHHHhCCceEEEEEeCCCC----CCccChhhhHHhhhCCCC
Q 002132 255 ------FRVAKAIAEALGIPSS------NLGEFQSLLKLISESITGKRFLLVLDDVWD----GDCIKWEPFYLCLKNGLH 318 (961)
Q Consensus 255 ------~~~~~~i~~~l~~~~~------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~----~~~~~~~~l~~~l~~~~~ 318 (961)
++...+.++.++...- ..+..+.-.-.|.+.|..+.=|+|||.=.. ......-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 2344445555544321 112233334456688889999999997432 2222333344444443
Q ss_pred CcEEEEEccchhhhhh
Q 002132 319 GSKILVTTRKKSVASM 334 (961)
Q Consensus 319 gs~iivTtR~~~~~~~ 334 (961)
|.-||++|-+-.....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 7889999988765443
No 307
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.81 E-value=0.051 Score=58.91 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=41.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhc----CCeEEEEEeCCcccHHHHHHHHHHHcC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRK----FDKLLWVCVSDPFEQFRVAKAIAEALG 266 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (961)
...++-|+|.+|+|||++|.+++-....... =..++||+....|+++++. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 4578999999999999999998864322111 1479999999988887765 4445554
No 308
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.80 E-value=0.021 Score=57.72 Aligned_cols=122 Identities=15% Similarity=0.110 Sum_probs=60.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC---CCCCHHHHHHHHHH--
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS---NLGEFQSLLKLISE-- 284 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~l~~~l~~-- 284 (961)
.+++.|+|+.|.||||+.+.+...... .+-...+|..-..- ..+.++...+..... .......-.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~----~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATI----GLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEE----eeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 388899999999999999998753211 11122222211000 011122222222111 01111111112222
Q ss_pred HhCCceEEEEEeCCCCCCcc-Chhh----hHHhhhCC-CCCcEEEEEccchhhhhhhc
Q 002132 285 SITGKRFLLVLDDVWDGDCI-KWEP----FYLCLKNG-LHGSKILVTTRKKSVASMMG 336 (961)
Q Consensus 285 ~l~~kr~LlVlDdv~~~~~~-~~~~----l~~~l~~~-~~gs~iivTtR~~~~~~~~~ 336 (961)
.+..++.|++||+....... +... +...+... ..+..+|+||...+.+....
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 22367899999998764321 2112 22233322 23457999999998877653
No 309
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.80 E-value=0.069 Score=59.57 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=48.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCCCC---CCCCHHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIPSS---NLGEFQSLLKLISE 284 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~l~~~l~~ 284 (961)
+..++.++|.+|+||||.|.+++.....+.. ..++-|++... +...+-+....+..+.+.. ...+...+.....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 4679999999999999999988875321222 23444544321 1223334445555554421 11223333333333
Q ss_pred HhCCceE-EEEEeCCCC
Q 002132 285 SITGKRF-LLVLDDVWD 300 (961)
Q Consensus 285 ~l~~kr~-LlVlDdv~~ 300 (961)
....+.| ++|+|-...
T Consensus 177 ~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHhcCCCEEEEeCCCc
Confidence 3333334 677776643
No 310
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.77 E-value=0.028 Score=54.25 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=63.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC--cccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD--PFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITG 288 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 288 (961)
.+++|+|..|.|||||.+.++... ......+++.-.. ..+..+..+ +.++.- .+....+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCHHHHHHHHHHHHHhc
Confidence 589999999999999999998742 2334555543211 111111111 111110 1122223333345566666
Q ss_pred ceEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchhhhh
Q 002132 289 KRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKSVAS 333 (961)
Q Consensus 289 kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~~~~ 333 (961)
+.-++++|+-... +......+...+... ..|..||++|.+.....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7788999997542 333344455555432 24667888888876443
No 311
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.097 Score=56.49 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=57.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc-cHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF-EQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
+.+++.++|+.|+||||++..++... ...-..+.+|+..... ...+-++..++.++.+.....+..++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 46899999999999999999998753 2233457777765432 23445666666666554333455566555544321
Q ss_pred -CceEEEEEeCCCC
Q 002132 288 -GKRFLLVLDDVWD 300 (961)
Q Consensus 288 -~kr~LlVlDdv~~ 300 (961)
+..=+|++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3446788898755
No 312
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.75 E-value=0.059 Score=58.28 Aligned_cols=59 Identities=25% Similarity=0.322 Sum_probs=43.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHh----cCCeEEEEEeCCcccHHHHHHHHHHHcCCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKR----KFDKLLWVCVSDPFEQFRVAKAIAEALGIP 268 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (961)
...++-|+|.+|+|||+||..++-...... .-..++|++....|+++++ .+|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 457899999999999999988875432211 1136999999999998876 4567766543
No 313
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.73 E-value=0.066 Score=51.85 Aligned_cols=115 Identities=14% Similarity=0.059 Sum_probs=61.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEE-------EeCCcccH--HHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWV-------CVSDPFEQ--FRVAKAIAEALGIPSSNLGEFQSLLKL 281 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~l~~~ 281 (961)
.+++|+|..|.|||||++.++.... .....+++ .+.+.... ..+...+.-. ........+...-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 5899999999999999999987432 11222221 12222211 1222222110 11222223333334
Q ss_pred HHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhh
Q 002132 282 ISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVAS 333 (961)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~ 333 (961)
+.+.+-.+.-++++|+--.. +......+...+... +..||++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 55666667788899986432 223344454555443 356888888776543
No 314
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.71 E-value=0.19 Score=52.70 Aligned_cols=130 Identities=11% Similarity=0.013 Sum_probs=74.9
Q ss_pred HHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhh------------HhcCCeEEEEEeCCcccHHHHHH
Q 002132 192 RNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV------------KRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------------~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
-+++...+.... -..-..++|+.|+||+++|..++...-- ..|.|..........
T Consensus 6 ~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-------- 72 (290)
T PRK05917 6 WEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-------- 72 (290)
T ss_pred HHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--------
Confidence 345555555322 3456779999999999999887764310 012221111111000
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHH-----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hhh
Q 002132 260 AIAEALGIPSSNLGEFQSLLKLISES-----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VAS 333 (961)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~l~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~~ 333 (961)
..-.+++..+ +.+. ..+++=++|+|+++..+.+.+..+...+.....++.+|++|.+.. +..
T Consensus 73 -----------~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 73 -----------RLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred -----------CcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 0012333322 2222 235666899999999888889999999988777777777776643 322
Q ss_pred h-hccCCcceEEcCCC
Q 002132 334 M-MGSTDTDIITVMEL 348 (961)
Q Consensus 334 ~-~~~~~~~~~~l~~L 348 (961)
. .+.. ..+.+.++
T Consensus 141 TI~SRc--q~~~~~~~ 154 (290)
T PRK05917 141 TIRSRS--LSIHIPME 154 (290)
T ss_pred HHHhcc--eEEEccch
Confidence 2 2222 56666664
No 315
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.71 E-value=0.019 Score=57.48 Aligned_cols=111 Identities=13% Similarity=0.162 Sum_probs=58.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH-HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF-RVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
.+|.|+|+.|+||||+++.+... ........++.- .++.... .-...+..+-.. ..+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTI-EDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEE-cCCccccccCccceeeeccc----CCCccCHHHHHHHHhcCC
Confidence 47899999999999999988774 223333344432 2221100 000011111000 111223445566777766
Q ss_pred eEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhh
Q 002132 290 RFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVAS 333 (961)
Q Consensus 290 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~ 333 (961)
.=++++|++-+. +.+...... ...|..++.|+.......
T Consensus 75 pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 779999999643 223332222 234556777776655443
No 316
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.70 E-value=0.09 Score=50.35 Aligned_cols=119 Identities=17% Similarity=0.078 Sum_probs=65.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEE---EeCCcccHHHHHHHHHH---HcCCC----CCCC-CC---H
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWV---CVSDPFEQFRVAKAIAE---ALGIP----SSNL-GE---F 275 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv---~~s~~~~~~~~~~~i~~---~l~~~----~~~~-~~---~ 275 (961)
...|-|++..|.||||.|--.+-. ...+--.++.+ .-.........+..+.- +.+.. ..+. .+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~r--a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALR--ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 367888888999999999877763 33332233322 22212233333333200 00110 0010 01 2
Q ss_pred HHHHHHHHHHhCCce-EEEEEeCCCC---CCccChhhhHHhhhCCCCCcEEEEEccchh
Q 002132 276 QSLLKLISESITGKR-FLLVLDDVWD---GDCIKWEPFYLCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 276 ~~l~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 330 (961)
.+..+..++.+...+ =++|||.+-. ....+.+.+...+.....+.-||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 223334445555444 4999999842 223456678888877777889999999874
No 317
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.70 E-value=0.036 Score=53.92 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=62.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcch---hhHhc---C--CeEEEEEeCCcccHHHHHHHHHHHcCCCCC------CCCC-
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHV---EVKRK---F--DKLLWVCVSDPFEQFRVAKAIAEALGIPSS------NLGE- 274 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~---f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~- 274 (961)
-.+++|+|+.|+|||||.+.+..+. ++... | ..+.|+ .+ .+.++.++.... ..-+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3689999999999999999886321 00000 1 012232 11 345666664321 1111
Q ss_pred HHHHHHHHHHHhCCc--eEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchhhhh
Q 002132 275 FQSLLKLISESITGK--RFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKSVAS 333 (961)
Q Consensus 275 ~~~l~~~l~~~l~~k--r~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~~~~ 333 (961)
.+...-.+...+-.+ .-++++|+--.. +......+...+... ..|..||++|.+.....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 222233344555556 678888987442 333344444444432 24667889998887654
No 318
>PTZ00035 Rad51 protein; Provisional
Probab=95.70 E-value=0.059 Score=58.49 Aligned_cols=58 Identities=26% Similarity=0.344 Sum_probs=41.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhH----hcCCeEEEEEeCCcccHHHHHHHHHHHcCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVK----RKFDKLLWVCVSDPFEQFRVAKAIAEALGI 267 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (961)
.-.++.|+|.+|+|||||+..++-..... ..-..++|++....|++++ +.++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 45899999999999999999887543211 1223577999988888877 4455666554
No 319
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.69 E-value=0.0078 Score=58.29 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=53.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
..++.+.|+.|+|||.||+.+++...+ +.....+-++++.-....+.-..+ ..+...... ... . ..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~~~~~~~~~-~~l~~~~~~--~v~-------~---~~ 68 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSEGDDVESSV-SKLLGSPPG--YVG-------A---EE 68 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCSHHHCSCHC-HHHHHHTTC--HHH-------H---HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccccchHHhhh-hhhhhcccc--eee-------c---cc
Confidence 468899999999999999999984321 344566666666543311111100 111000000 000 0 00
Q ss_pred eEEEEEeCCCCCCc-----------cChhhhHHhhhC
Q 002132 290 RFLLVLDDVWDGDC-----------IKWEPFYLCLKN 315 (961)
Q Consensus 290 r~LlVlDdv~~~~~-----------~~~~~l~~~l~~ 315 (961)
.-+|+||+++.... .-|..+...+..
T Consensus 69 ~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~ 105 (171)
T PF07724_consen 69 GGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEG 105 (171)
T ss_dssp HTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcc
Confidence 11999999988876 667777777754
No 320
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.67 E-value=0.081 Score=54.22 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=32.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
..++.|.|..|+||||+|.+++... .+.. ..+++++... +..++++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 4589999999999999987666532 2222 4567776443 455666665
No 321
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.66 E-value=0.038 Score=66.88 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=76.2
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
..++|+...+..+.+.+..... ...-|.|+|..|+|||++|+.+++.- ...-...+.+++.... ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEEEecccCC-hhHhhhhhc
Confidence 4699999999988777664332 22457899999999999999998742 1112244555555432 111222221
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEccch
Q 002132 263 EALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTRKK 329 (961)
Q Consensus 263 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 329 (961)
........+.. ......+. ....=.|+||+|..........+...+..+. .+.|||.||...
T Consensus 449 g~~~~~~~g~~--~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGAS--AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Ccccccccccc--cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 11111101100 00011111 1223469999998876666667777765432 345888888654
No 322
>PRK10867 signal recognition particle protein; Provisional
Probab=95.65 E-value=0.057 Score=60.25 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...+|.++|.+|+||||.|.+++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 45899999999999999998888743
No 323
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.65 E-value=0.039 Score=53.27 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=44.8
Q ss_pred EEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCC---CCHHHHHHHHHHHhCCc
Q 002132 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNL---GEFQSLLKLISESITGK 289 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~l~~~l~~~l~~k 289 (961)
+.|.|..|+|||++|.++... ....++++.-...++.+ ....|........... .....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 679999999999999998763 23467777777666543 3333333222222221 1122333333222 2 2
Q ss_pred eEEEEEeCC
Q 002132 290 RFLLVLDDV 298 (961)
Q Consensus 290 r~LlVlDdv 298 (961)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 324
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.61 E-value=0.072 Score=55.99 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=51.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCCC---CCCCCH-HHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIPS---SNLGEF-QSLLKLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~---~~~~~~-~~l~~~l~ 283 (961)
+.+++.++|++|+||||++.+++... ...-..+++++.... ....+-+...++..+.+. ....+. ......+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 45899999999999999999998743 333345666665431 112233444555555331 111222 22233344
Q ss_pred HHhCCceEEEEEeCCCC
Q 002132 284 ESITGKRFLLVLDDVWD 300 (961)
Q Consensus 284 ~~l~~kr~LlVlDdv~~ 300 (961)
.......=++++|-...
T Consensus 149 ~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 149 KAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHCCCCEEEEeCCCC
Confidence 43334445788887754
No 325
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.55 E-value=0.049 Score=54.35 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=45.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCC---eEEEEEeCCcccHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHH
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFD---KLLWVCVSDPFEQFRVAKAIAEAL----GIPSSNLGEFQSLLKLISE 284 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~i~~~l----~~~~~~~~~~~~l~~~l~~ 284 (961)
||+|.|.+|+||||+|+.+...... .... ....+.............. -... ....+..-+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999885321 1222 2344333333222222221 1111 1122345667778887877
Q ss_pred HhCCceEEE
Q 002132 285 SITGKRFLL 293 (961)
Q Consensus 285 ~l~~kr~Ll 293 (961)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 767665433
No 326
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.0018 Score=64.58 Aligned_cols=100 Identities=19% Similarity=0.165 Sum_probs=75.5
Q ss_pred CCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccch--
Q 002132 569 VKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPE-- 646 (961)
Q Consensus 569 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~-- 646 (961)
+.+.+.|.+.++.+.+ -.+..+|+.|.||.|+-|. +..+ ..+..|.+|+.|.|+.|.|..+-+
T Consensus 18 l~~vkKLNcwg~~L~D--------Isic~kMp~lEVLsLSvNk------IssL-~pl~rCtrLkElYLRkN~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--------ISICEKMPLLEVLSLSVNK------ISSL-APLQRCTRLKELYLRKNCIESLDELE 82 (388)
T ss_pred HHHhhhhcccCCCccH--------HHHHHhcccceeEEeeccc------cccc-hhHHHHHHHHHHHHHhcccccHHHHH
Confidence 4556677777766431 2246789999999999998 6666 347789999999999999987643
Q ss_pred hhhccCCCcEEeecCcccccccch-----hhhcccCCceeec
Q 002132 647 TLCELYNLEKLYITRCLYLEELPE-----GIGKLINMKHLLN 683 (961)
Q Consensus 647 ~i~~L~~L~~L~L~~~~~l~~lp~-----~i~~L~~L~~L~l 683 (961)
.+.+|++|++|.|..|.-...-+. .+.-|+||+.||-
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 478999999999998875544443 2567899999874
No 327
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.54 E-value=0.11 Score=53.98 Aligned_cols=145 Identities=18% Similarity=0.274 Sum_probs=74.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHh----------cCCeEEEEEeCCccc-HHHHHHHHHHHcCCCCC----------
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKR----------KFDKLLWVCVSDPFE-QFRVAKAIAEALGIPSS---------- 270 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~----------~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~---------- 270 (961)
+-.|+|++|+|||+||..++-...... .-..+++++...+.+ +.+-+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 567999999999999998876421111 112466666665442 34444455554421100
Q ss_pred -------C---CCCHHHHHHHHHHHhCCceEEEEEeCCCC------CCccChhhhHHhhhC--CCCCcEEEEEccchhhh
Q 002132 271 -------N---LGEFQSLLKLISESITGKRFLLVLDDVWD------GDCIKWEPFYLCLKN--GLHGSKILVTTRKKSVA 332 (961)
Q Consensus 271 -------~---~~~~~~l~~~l~~~l~~kr~LlVlDdv~~------~~~~~~~~l~~~l~~--~~~gs~iivTtR~~~~~ 332 (961)
. ......+...+......+.-+||+|-+.. .+......+...+.. ...|..||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 00112222222223334567999997632 122233444444432 23466777777654322
Q ss_pred h--------hhc-----cCCcceEEcCCCCHHHHHHH
Q 002132 333 S--------MMG-----STDTDIITVMELTEEECWSL 356 (961)
Q Consensus 333 ~--------~~~-----~~~~~~~~l~~L~~~~~~~l 356 (961)
. ..+ ......+.+.+++++++.++
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 1 000 00124678888888888773
No 328
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.53 E-value=0.12 Score=54.71 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=37.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEAL 265 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 265 (961)
-.++.|.|.+|+||||++.+++... ...+-..++|++... +..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 3588899999999999999988753 223235688988766 3455666665543
No 329
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.52 E-value=0.049 Score=55.34 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=40.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcC-CCCCCCCCHHHHHHHHHHHhC
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALG-IPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~l~~~l~~~l~ 287 (961)
+|+|.|..|+||||+|+.+.........=..+..++...-+.....+.... .+. ...+..-+.+.+.+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 589999999999999999988432100112345555554433222222211 111 112344456666665555544
No 330
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.50 E-value=0.073 Score=57.64 Aligned_cols=58 Identities=24% Similarity=0.341 Sum_probs=42.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHh----cCCeEEEEEeCCcccHHHHHHHHHHHcCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKR----KFDKLLWVCVSDPFEQFRVAKAIAEALGI 267 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (961)
...++-|+|.+|+||||++.+++....... .-..++||+....|+.+++. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 458899999999999999999876432211 11379999999988887654 45555543
No 331
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.49 E-value=0.067 Score=56.35 Aligned_cols=80 Identities=24% Similarity=0.184 Sum_probs=43.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC--CeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF--DKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISES 285 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~ 285 (961)
....+|+|.|..|+||||+|+.+..- ..... ..+..++...-..........--.-....+..-+.+.+.+.+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 35689999999999999999877652 22211 134455544433222222211000001123445666676666666
Q ss_pred hCCc
Q 002132 286 ITGK 289 (961)
Q Consensus 286 l~~k 289 (961)
..++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5554
No 332
>PHA02244 ATPase-like protein
Probab=95.45 E-value=0.051 Score=58.36 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-|.|+|++|+|||+||+.++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999884
No 333
>PRK05439 pantothenate kinase; Provisional
Probab=95.45 E-value=0.07 Score=56.62 Aligned_cols=80 Identities=25% Similarity=0.256 Sum_probs=46.4
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHhcchhhHhc--CCeEEEEEeCCcccHHHHHHH--HHHHcCCCCCCCCCHHHHHHHH
Q 002132 207 QKGLHIISIVGMGGIGKTTLAQLACNHVEVKRK--FDKLLWVCVSDPFEQFRVAKA--IAEALGIPSSNLGEFQSLLKLI 282 (961)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~--i~~~l~~~~~~~~~~~~l~~~l 282 (961)
.+..-+|+|.|.+|+||||+|+.+..- .... ...+.-++...-+-....+.. ++.. ...+..-+.+.+.+.+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~--kg~Pes~D~~~l~~~L 158 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEERGLMKR--KGFPESYDMRALLRFL 158 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhhhhcccc--CCCcccccHHHHHHHH
Confidence 346789999999999999999988773 2222 123444555443322222221 1111 1123445667777777
Q ss_pred HHHhCCce
Q 002132 283 SESITGKR 290 (961)
Q Consensus 283 ~~~l~~kr 290 (961)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 76666654
No 334
>PRK08233 hypothetical protein; Provisional
Probab=95.44 E-value=0.038 Score=54.56 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|+|.|.+|+||||||+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999874
No 335
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.047 Score=62.05 Aligned_cols=73 Identities=25% Similarity=0.179 Sum_probs=48.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc--cHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF--EQFRVAKAIAEALGIPSSNLGEFQSLLKLISESI 286 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 286 (961)
...-|.|.|..|+|||+||+.+++... +...-.+.+|+++.-. ..+.+++. +...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-----------------l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-----------------LNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-----------------HHHHHHHHH
Confidence 346789999999999999999999764 4455556666665421 12222211 122333455
Q ss_pred CCceEEEEEeCCC
Q 002132 287 TGKRFLLVLDDVW 299 (961)
Q Consensus 287 ~~kr~LlVlDdv~ 299 (961)
.-..-+|||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6778899999995
No 336
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.083 Score=51.61 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=63.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCC--CC----CC--------CCCH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGI--PS----SN--------LGEF 275 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~----~~--------~~~~ 275 (961)
-.+++|+|..|.|||||++.++... ......+++.-....+.. ..+...+.. +. .. ....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3689999999999999999998742 122344443211100000 011111110 00 00 1112
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchhhhhh
Q 002132 276 QSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKSVASM 334 (961)
Q Consensus 276 ~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~~~~~ 334 (961)
+...-.+...+..+.-++++|+-... +......+...+... ..|..||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 22223455667778889999997543 223334444444432 236778999888776553
No 337
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.018 Score=53.06 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcch
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
--|+|.|++|+||||+++++.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 457999999999999999999854
No 338
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.36 E-value=0.051 Score=53.08 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=60.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC--cccHHHHHHHHHHHcCCC--CCC----------CCCHH
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD--PFEQFRVAKAIAEALGIP--SSN----------LGEFQ 276 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~--~~~----------~~~~~ 276 (961)
.+++|+|..|.|||||.+.++... ......+++.-.. ....... ...+..- ... ....+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHHH
Confidence 589999999999999999998742 2223333332110 0111111 1111100 000 11122
Q ss_pred HHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchhhhh
Q 002132 277 SLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKSVAS 333 (961)
Q Consensus 277 ~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~~~~ 333 (961)
...-.+...+-.+.-++++|+-... +......+...+... ..|..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2223344555666778999987542 223334444444332 23667888888877654
No 339
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.34 E-value=0.32 Score=51.79 Aligned_cols=61 Identities=10% Similarity=0.146 Sum_probs=39.8
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHH
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRV 257 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 257 (961)
.++-.......++..+... +.|.|.|.+|+||||+|+.++.. .... .+.|..+...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhc
Confidence 4444445556677776521 35899999999999999999984 3322 345566655554443
No 340
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.31 E-value=0.16 Score=50.70 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=86.2
Q ss_pred CceecccchHHH---HHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 183 EEICGRVGERNE---LLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 183 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
.+++|.++.+.+ |++.|..++.=.+-..+-|..+|++|.|||.+|+.+++.. +..| +-|.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~--kvp~---l~vka------t~l-- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL---LLVKA------TEL-- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc--CCce---EEech------HHH--
Confidence 468898766543 5677765543224456889999999999999999999953 2222 11111 111
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHH-HHhCCceEEEEEeCCCCCCc--------cChhhhHHhhh----C--CCCCcEEEE
Q 002132 260 AIAEALGIPSSNLGEFQSLLKLIS-ESITGKRFLLVLDDVWDGDC--------IKWEPFYLCLK----N--GLHGSKILV 324 (961)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~l~~~l~-~~l~~kr~LlVlDdv~~~~~--------~~~~~l~~~l~----~--~~~gs~iiv 324 (961)
|-+.. .+....++.+. +.-+.-.+++.+|.++.... .+..++..+|. . .+.|...|-
T Consensus 188 -iGehV-------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 188 -IGEHV-------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHh-------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 11111 11222222232 23335589999998854210 12222222222 1 235666676
Q ss_pred Eccchhhhhhh-ccCCcceEEcCCCCHHHHHHHHHHHH
Q 002132 325 TTRKKSVASMM-GSTDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 325 TtR~~~~~~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
.|.+....... ...-..-++..--+++|-.+++...+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 77666543322 21111345666667888888887776
No 341
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.30 E-value=0.054 Score=53.73 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=31.2
Q ss_pred EEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
+.|.|.+|+|||+||.++.... ...-..++|++... +.+++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~--~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG--LARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCC--CHHHHHHH
Confidence 6799999999999999987753 23335688887765 34444443
No 342
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.036 Score=54.80 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=43.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCccc-HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFE-QFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
++.+|+|.|.+|+||||+|+.++.. .+.. .++-++-..-+. .+..-.+--....-..+..-+.+-+.+.|...++
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~--~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ--LGVE--KVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH--hCcC--cceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHc
Confidence 5689999999999999999999884 3322 122222111111 0000000000111123344566777777777777
Q ss_pred Cce
Q 002132 288 GKR 290 (961)
Q Consensus 288 ~kr 290 (961)
++.
T Consensus 83 g~~ 85 (218)
T COG0572 83 GKP 85 (218)
T ss_pred CCc
Confidence 776
No 343
>PRK07667 uridine kinase; Provisional
Probab=95.27 E-value=0.041 Score=54.76 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 192 RNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
.+.+.+.+.... +...+|+|-|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666665443 245899999999999999999998843
No 344
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.11 Score=57.68 Aligned_cols=89 Identities=17% Similarity=0.326 Sum_probs=50.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
...+++++|..|+||||++.+++.........+.+..+.... .....+-+....+.++.+.....+..++...+. .+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 447999999999999999998877422222234455554333 223334455566666655443344444433333 344
Q ss_pred CceEEEEEeCCC
Q 002132 288 GKRFLLVLDDVW 299 (961)
Q Consensus 288 ~kr~LlVlDdv~ 299 (961)
++ -++++|-..
T Consensus 269 ~~-d~VLIDTaG 279 (420)
T PRK14721 269 GK-HMVLIDTVG 279 (420)
T ss_pred CC-CEEEecCCC
Confidence 43 456667653
No 345
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.21 E-value=0.057 Score=62.70 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=77.8
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
...++|+...+.++.+.+..... ...-|.|+|..|+|||++|+.+.+.- ...-...+.|++..-.+ ..+..++
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s--~r~~~p~v~v~c~~~~~-~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAAS--PRADKPLVYLNCAALPE-SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhC--CcCCCCeEEEEcccCCh-HHHHHHh
Confidence 45799999999999888876543 23457899999999999999998742 11222455666655332 1111112
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEccch
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTRKK 329 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 329 (961)
.-...+....... +. .-.+. ....=.|+||++..........+...+..+. ...|||.||...
T Consensus 259 fG~~~g~~~ga~~-~~-~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 FGHVKGAFTGAIS-NR-SGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cCccccccCCCcc-cC-Ccchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 1111110000000 00 00011 1122347899998877666677777775432 245888888654
No 346
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.069 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcch
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
+.|.+.|.+|+||||+|++++.-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467899999999999999998843
No 347
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.19 E-value=0.14 Score=52.85 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=36.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
.-.++.|.|.+|+|||++|.++.... . ..-..++||+... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 45799999999999999999876632 2 3456788988765 455555553
No 348
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.13 Score=61.69 Aligned_cols=122 Identities=13% Similarity=0.201 Sum_probs=76.1
Q ss_pred ceecccchHHHHHHHHhcCCcccCC--CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 184 EICGRVGERNELLSKLLCESSEQQK--GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
.++|-++.+..|.+.+.....+-.. ....+.+.|+.|+|||-||+.++.. +-+..+..+-++.|.-.. +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~~e-------v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEFQE-------V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhhhh-------h
Confidence 4788888888888888765432122 5678899999999999999999884 333334455555554221 2
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhCCceE-EEEEeCCCCCCccChhhhHHhhhCC
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESITGKRF-LLVLDDVWDGDCIKWEPFYLCLKNG 316 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (961)
.+.++.+ +.-.. .+-...|.+.++.+.| +|+||||+..+......+...+..+
T Consensus 634 skligsp-~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLIGSP-PGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhccCCC-ccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 2333332 21111 1122356677777765 7779999887666666566666554
No 349
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.17 E-value=0.12 Score=53.08 Aligned_cols=115 Identities=18% Similarity=0.178 Sum_probs=64.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC------------------
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS------------------ 270 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------------ 270 (961)
.-.++.|.|.+|+||||+|.+++... . ..-..++|++..... +.+.+. +++++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~~--~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEESR--ESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCCH--HHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 45789999999999999999877532 2 234578888875543 343332 222221100
Q ss_pred ------CCCCHHHHHHHHHHHhCC---ceEEEEEeCCCCC---CccChhhhHHhhhC--CCCCcEEEEEccc
Q 002132 271 ------NLGEFQSLLKLISESITG---KRFLLVLDDVWDG---DCIKWEPFYLCLKN--GLHGSKILVTTRK 328 (961)
Q Consensus 271 ------~~~~~~~l~~~l~~~l~~---kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtR~ 328 (961)
...+.+++...+++..+. +.-.+|+|.+... +...-..+...+.. ...|..+|+|+..
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 012455666666665543 3458899997532 11111121111211 2357778888763
No 350
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.038 Score=51.04 Aligned_cols=44 Identities=32% Similarity=0.512 Sum_probs=33.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCC
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIP 268 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (961)
+|.|-|++|+||||+|+.++++.... .| +.-.++++|+++.+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999854221 12 2235889999888764
No 351
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.13 E-value=0.098 Score=59.00 Aligned_cols=88 Identities=15% Similarity=0.280 Sum_probs=50.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITG 288 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 288 (961)
.+|++++|+.|+||||++.+++.....+..-..+..|.... .....+-++...+.++.+.....+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 37999999999999999999997543222222455565433 22334445555666655433222222222222 23444
Q ss_pred ceEEEEEeCCC
Q 002132 289 KRFLLVLDDVW 299 (961)
Q Consensus 289 kr~LlVlDdv~ 299 (961)
+ ..+++|-..
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 467777764
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.12 E-value=0.017 Score=60.72 Aligned_cols=96 Identities=24% Similarity=0.277 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCC
Q 002132 193 NELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNL 272 (961)
Q Consensus 193 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 272 (961)
..+++.+... -+-+.++|+.|+|||++++....... ...| .+.-++.+..-+...++.-+-..+.... ..
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~-~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRR-GR 92 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECT-TE
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCC-CC
Confidence 4456655532 24568999999999999999876421 1111 2444555654444433221111111100 00
Q ss_pred CCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChh
Q 002132 273 GEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWE 307 (961)
Q Consensus 273 ~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~ 307 (961)
...--.+|+.++++||+.-...+.|.
T Consensus 93 ---------~~gP~~~k~lv~fiDDlN~p~~d~yg 118 (272)
T PF12775_consen 93 ---------VYGPPGGKKLVLFIDDLNMPQPDKYG 118 (272)
T ss_dssp ---------EEEEESSSEEEEEEETTT-S---TTS
T ss_pred ---------CCCCCCCcEEEEEecccCCCCCCCCC
Confidence 00112478999999999765444443
No 353
>PTZ00301 uridine kinase; Provisional
Probab=95.08 E-value=0.042 Score=55.15 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+..+|+|.|.+|+||||||+.+.+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHH
Confidence 3479999999999999999998873
No 354
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.07 E-value=0.092 Score=53.95 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
.+..+++|.|..|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998843
No 355
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.067 Score=59.81 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=61.0
Q ss_pred CceecccchHHHHHHHHhcCCcc------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFR 256 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (961)
.++=|.++.+.++.+++...... +-...+=|.++|++|+|||.||+.+++.. . +-++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~-----vPf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--G-----VPFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--C-----CceEeecch-----
Confidence 45678888888887776542110 01234567899999999999999999953 2 223333332
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCC
Q 002132 257 VAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWD 300 (961)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 300 (961)
+|+....+ ...+.+.+.+.+....-.+++++|+++-
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 22222222 2234455555566667799999999965
No 356
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.06 E-value=0.037 Score=52.10 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=27.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEE
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVC 247 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 247 (961)
..||.|.|.+|+||||||+.+.+. ....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 368999999999999999999994 444445566664
No 357
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.05 E-value=0.067 Score=53.70 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=51.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCC-------CCCCCCHHH-----
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIP-------SSNLGEFQS----- 277 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 277 (961)
..++|+|.+|+|||+|++.+.++. .-+.++++.+... .++.++.+++...-..+ ..+.....+
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 567999999999999999998853 2355688888754 45566666664331111 111111111
Q ss_pred ----HHHHHHHHhCCceEEEEEeCC
Q 002132 278 ----LLKLISESITGKRFLLVLDDV 298 (961)
Q Consensus 278 ----l~~~l~~~l~~kr~LlVlDdv 298 (961)
..+.++. ++++.|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 1222333 699999999998
No 358
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.04 E-value=0.11 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
||.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998773
No 359
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.02 E-value=0.059 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...+|.|+|.+|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999854
No 360
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.99 E-value=0.024 Score=60.17 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=45.6
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|+|.++.++++++.+...+.+.+.+-+|+.++|+.|.||||||..+.+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999998776555667899999999999999999988874
No 361
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.98 E-value=0.13 Score=61.11 Aligned_cols=88 Identities=19% Similarity=0.312 Sum_probs=54.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITG 288 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 288 (961)
.+|+.++|+.|+||||.+.+++...........+..+.... .....+-++...+.++.+.....+..++.+.+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 47999999999999999999987542222223455655432 1224455666777776655444455555555543 344
Q ss_pred ceEEEEEeCCC
Q 002132 289 KRFLLVLDDVW 299 (961)
Q Consensus 289 kr~LlVlDdv~ 299 (961)
+ =+|++|-..
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 4 377778765
No 362
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.96 E-value=0.15 Score=49.68 Aligned_cols=119 Identities=14% Similarity=0.022 Sum_probs=66.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC---cccHHHHHHHHH--HH--cCCCC--CC-C--CC---
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD---PFEQFRVAKAIA--EA--LGIPS--SN-L--GE--- 274 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~--~~--l~~~~--~~-~--~~--- 274 (961)
...|-|+|..|-||||.|.-.+-. ...+--.+..+-+-. .......+..+- .. .+... .. . .+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 467899999999999999877663 333333333333322 122223332210 00 01100 00 0 01
Q ss_pred HHHHHHHHHHHhCCc-eEEEEEeCCCC---CCccChhhhHHhhhCCCCCcEEEEEccchh
Q 002132 275 FQSLLKLISESITGK-RFLLVLDDVWD---GDCIKWEPFYLCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 275 ~~~l~~~l~~~l~~k-r~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 330 (961)
..+..+..++.+.+. -=+||||.+-. ....+.+++...+.....+.-||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 122333444555544 45999999843 223466778888877777889999999874
No 363
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.96 E-value=0.016 Score=53.31 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHhcc
Q 002132 213 ISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~ 233 (961)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999884
No 364
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.91 E-value=0.15 Score=55.98 Aligned_cols=83 Identities=28% Similarity=0.363 Sum_probs=48.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCC-----CCCHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSN-----LGEFQSLLKLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~~l~ 283 (961)
.-.++.|.|.+|+|||||+.+++... ...-..++|++.... ..++ ..-++.++..... ..+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 34789999999999999999998743 333356888876543 3332 2234455443221 123344433332
Q ss_pred HHhCCceEEEEEeCCC
Q 002132 284 ESITGKRFLLVLDDVW 299 (961)
Q Consensus 284 ~~l~~kr~LlVlDdv~ 299 (961)
+.+.-+||+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2344567777763
No 365
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.88 E-value=0.076 Score=50.94 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=64.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCccc--HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFE--QFRVAKAIAEALGIPSSNLGEFQSLLKLISESITG 288 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 288 (961)
.+++|+|..|.|||||++.++... ......+++....... ... ....+..-.. ....+...-.+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~q-lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEE----LRRRIGYVPQ-LSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHH----HHhceEEEee-CCHHHHHHHHHHHHHhc
Confidence 689999999999999999998843 2344555554321111 111 1111111100 12222333335556666
Q ss_pred ceEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchhhhhhh
Q 002132 289 KRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKSVASMM 335 (961)
Q Consensus 289 kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~~~~~~ 335 (961)
..-++++|+.... +......+...+... ..+..+|++|.+.......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 6789999998543 222334444444321 1246788888887766554
No 366
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.87 E-value=0.1 Score=54.55 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=31.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP 251 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 251 (961)
.-.++.|.|.+|+|||++|.+++... . ..-..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a-~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-A-SRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hCCCcEEEEEecCC
Confidence 45789999999999999999986642 2 23457888888753
No 367
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.85 E-value=0.16 Score=51.81 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=32.3
Q ss_pred HHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhhh
Q 002132 282 ISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASM 334 (961)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~ 334 (961)
+...+-.+.-++++|+-... +....+.+...+..-..+..||++|.+......
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~ 197 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEA 197 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 44555667789999997543 233344455555432234568888888776544
No 368
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.083 Score=51.90 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=60.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCC--CCC----C----------CC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGI--PSS----N----------LG 273 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~~----~----------~~ 273 (961)
-.+++|+|..|.|||||++.++-.. ......+.+.-........-.....+.+.. +.+ . ..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 3689999999999999999998632 222334433211000000000001111110 000 0 11
Q ss_pred CHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCC-C-CcEEEEEccchhhhh
Q 002132 274 EFQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGL-H-GSKILVTTRKKSVAS 333 (961)
Q Consensus 274 ~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~-~-gs~iivTtR~~~~~~ 333 (961)
..+...-.+...+..+.=++++|+-... |......+...+.... . |..||++|.+.....
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1122223345566667788999986442 3333344544444321 2 567888888776554
No 369
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.84 E-value=0.25 Score=50.18 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|..|.|||||++.++-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 68999999999999999988764
No 370
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.80 E-value=0.075 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999884
No 371
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.21 Score=58.53 Aligned_cols=181 Identities=16% Similarity=0.068 Sum_probs=95.7
Q ss_pred ceecccc---hHHHHHHHHhcCCccc---CCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHH
Q 002132 184 EICGRVG---ERNELLSKLLCESSEQ---QKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRV 257 (961)
Q Consensus 184 ~~vGr~~---~~~~l~~~L~~~~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 257 (961)
++.|-++ |+++++++|..+..-+ -.-++=+.++|++|.|||-||++++-... +=|+++|..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH------
Confidence 5777765 4455566666543211 12345578999999999999999998542 334444442
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCCCC-----------ccChhh-hHHhhhC---CC--CC
Q 002132 258 AKAIAEALGIPSSNLGEFQSLLKLISES-ITGKRFLLVLDDVWDGD-----------CIKWEP-FYLCLKN---GL--HG 319 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~-----------~~~~~~-l~~~l~~---~~--~g 319 (961)
+.++.+.... ....+.+... -....++|.+|+++... ..+-+. +...+.. .. .+
T Consensus 379 --EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 --EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred --HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 1111221110 1222223322 23557888888875321 011111 2222221 11 22
Q ss_pred cEEEEEccchhhhhhh--ccC-CcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch
Q 002132 320 SKILVTTRKKSVASMM--GST-DTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL 389 (961)
Q Consensus 320 s~iivTtR~~~~~~~~--~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 389 (961)
--++-+|...++.... ... -.+.+.+..-+.....++|..++-.-.. ..+..++++ |+...-|.+=
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~g 519 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSG 519 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcH
Confidence 2333455555543321 111 1256788888888888999888743222 134445555 8888887763
No 372
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.79 E-value=0.077 Score=56.39 Aligned_cols=85 Identities=25% Similarity=0.238 Sum_probs=53.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCC-----CCCHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSN-----LGEFQSLLKLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~~l~ 283 (961)
.-+++-|+|..|+||||||..+... ....-..++||+..+.+++. .++.++.+... -...++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 4579999999999999999998874 44455679999998877664 34555554221 123445555555
Q ss_pred HHhC-CceEEEEEeCCCC
Q 002132 284 ESIT-GKRFLLVLDDVWD 300 (961)
Q Consensus 284 ~~l~-~kr~LlVlDdv~~ 300 (961)
..++ +..-++|+|-|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 5554 3345889998843
No 373
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.79 E-value=0.036 Score=56.43 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHhHhhhHhHHHHHH
Q 002132 9 LVEQLISFVAKEIKQQVKLVIGVEKEVKGITSHLRAIRAVLDDAE-EKQVKDEAVRLWLGRLKYASYDIEDVLDEWI 84 (961)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~-~~~~~~~~~~~wl~~lr~~~~d~ed~lD~~~ 84 (961)
.|..++..|-.........+.-++.+++-++.+++.+|.||+... +.....+....+..++-..||++|.++|.+.
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 456666777666666666677889999999999999999999874 4333334588999999999999999999875
No 374
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.79 E-value=0.087 Score=52.76 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=62.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCC-------CHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLG-------EFQSLLKLI 282 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~l~~~l 282 (961)
.+++.|.|+.|.||||+.+.++-.. +..+.. .+|.+.. .. -.+...|...++....... +..++.. +
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~G--~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~-i 102 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQIG--CFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAY-I 102 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHcC--CCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHH-H
Confidence 3789999999999999999887542 111111 1221111 00 1222333333332211111 1122211 1
Q ss_pred HHHhCCceEEEEEeCCCCCC-ccC----hhhhHHhhhCCCCCcEEEEEccchhhhhhhcc
Q 002132 283 SESITGKRFLLVLDDVWDGD-CIK----WEPFYLCLKNGLHGSKILVTTRKKSVASMMGS 337 (961)
Q Consensus 283 ~~~l~~kr~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~iivTtR~~~~~~~~~~ 337 (961)
.. +..++-|+++|+..... ..+ ...+...+.. .+..+|++|...+++.....
T Consensus 103 l~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 103 LD-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 11 23567899999985532 112 1222333333 37889999999998876653
No 375
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.78 E-value=0.17 Score=60.87 Aligned_cols=131 Identities=18% Similarity=0.124 Sum_probs=73.5
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
+.++|....+.++.+.+..... .. .-|.|+|..|+||+++|+.+.+.- ...-...+.|++..-.. ..+..+++
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~---~~-~pvli~Ge~GtGK~~~A~~ih~~s--~r~~~pfv~vnc~~~~~-~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK---SS-FPVLLCGEEGVGKALLAQAIHNES--ERAAGPYIAVNCQLYPD-EALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC---cC-CCEEEECCCCcCHHHHHHHHHHhC--CccCCCeEEEECCCCCh-HHHHHHhc
Confidence 4588999888888887765442 12 336799999999999999998742 11112344455544321 22223332
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCCCCccChhhhHHhhhCCC---C--------CcEEEEEccch
Q 002132 263 EALGIPSSNLGEFQSLLKLISESI-TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL---H--------GSKILVTTRKK 329 (961)
Q Consensus 263 ~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iivTtR~~ 329 (961)
......... ... ..+ ....=.|+||++..........+...+..+. . ..|||.||...
T Consensus 398 g~~~~~~~~-~~~--------g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 398 GSDRTDSEN-GRL--------SKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred CCCCcCccC-CCC--------CceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence 211100000 000 001 1123469999998877666677777775432 1 34677776643
No 376
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.22 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|..|+|||||++.++-.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 377
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.71 E-value=0.022 Score=45.74 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 378
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.70 E-value=0.06 Score=58.77 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=48.0
Q ss_pred CceecccchHHHHHHHHhcC-------Cc-ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC---CeEEEEEeCC-
Q 002132 183 EEICGRVGERNELLSKLLCE-------SS-EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF---DKLLWVCVSD- 250 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~-------~~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~- 250 (961)
..++|.++.++.+...+... .+ ...-..+.|.++|++|+|||++|+.++.. ....| +..-+...+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 45888888888876555431 00 00112367899999999999999999884 33333 2222222111
Q ss_pred cccHHHHHHHHHHHc
Q 002132 251 PFEQFRVAKAIAEAL 265 (961)
Q Consensus 251 ~~~~~~~~~~i~~~l 265 (961)
..+.+.+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665543
No 379
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.69 E-value=0.3 Score=48.83 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=68.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchh------------h-H-----hcCCe--EEEEEeCCccc----HHHH--------
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVE------------V-K-----RKFDK--LLWVCVSDPFE----QFRV-------- 257 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~------------~-~-----~~f~~--~~wv~~s~~~~----~~~~-------- 257 (961)
-.+++|+|..|+|||||++.++--.+ . . ..|.. .+|-+-....+ +.++
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 35899999999999999998865321 0 0 01211 23332222222 2222
Q ss_pred --------HHHHHHHcCCCC------CCCCCHHHHH-HHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhC--CCCC
Q 002132 258 --------AKAIAEALGIPS------SNLGEFQSLL-KLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKN--GLHG 319 (961)
Q Consensus 258 --------~~~i~~~l~~~~------~~~~~~~~l~-~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~g 319 (961)
..+++++++.+. +..-+..+++ -.|.+.|.-+.-+||+|..-.. |...-..+...|.. ...+
T Consensus 113 ~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~ 192 (252)
T COG1124 113 GLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERG 192 (252)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcC
Confidence 334445555432 1222233333 3466777778889999987442 11111222333322 2345
Q ss_pred cEEEEEccchhhhhhhcc
Q 002132 320 SKILVTTRKKSVASMMGS 337 (961)
Q Consensus 320 s~iivTtR~~~~~~~~~~ 337 (961)
--+|+.|.+-.+...++.
T Consensus 193 lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 193 LTYLFISHDLALVEHMCD 210 (252)
T ss_pred ceEEEEeCcHHHHHHHhh
Confidence 568888888877766654
No 380
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.68 E-value=0.027 Score=56.96 Aligned_cols=26 Identities=38% Similarity=0.364 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+...+|+|+|+.|+||||||+.++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999874
No 381
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.68 E-value=0.31 Score=49.98 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=68.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHh----------------cC-CeEEEEEeC----------------C------
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKR----------------KF-DKLLWVCVS----------------D------ 250 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------~f-~~~~wv~~s----------------~------ 250 (961)
-.+++|+|+.|+|||||.+.++.-..... .+ ..+++|.=+ .
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~ 107 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL 107 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc
Confidence 47899999999999999998877321000 00 012222210 0
Q ss_pred --ccc--HHHHHHHHHHHcCCCC------CCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhC--CC
Q 002132 251 --PFE--QFRVAKAIAEALGIPS------SNLGEFQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKN--GL 317 (961)
Q Consensus 251 --~~~--~~~~~~~i~~~l~~~~------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~ 317 (961)
..+ -.+...+.++.++... ......+.-...+...|..+.=+++||+=-+. |...-.++...+.. ..
T Consensus 108 ~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 108 FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence 001 1223444455554331 12233344444566778888888999974321 11111223333332 13
Q ss_pred CCcEEEEEccchhhhhhhcc
Q 002132 318 HGSKILVTTRKKSVASMMGS 337 (961)
Q Consensus 318 ~gs~iivTtR~~~~~~~~~~ 337 (961)
.|.-||+++.+...|...+.
T Consensus 188 ~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 188 KGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred cCCEEEEEecCHHHHHHhCC
Confidence 46779999999988777654
No 382
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.66 E-value=0.24 Score=51.40 Aligned_cols=126 Identities=15% Similarity=0.121 Sum_probs=64.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhH-h--cCC--eEEEEEeC----CcccHHHHH--------------HHHHHHcC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVK-R--KFD--KLLWVCVS----DPFEQFRVA--------------KAIAEALG 266 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f~--~~~wv~~s----~~~~~~~~~--------------~~i~~~l~ 266 (961)
-.+++|+|..|+|||||++.++...... . .++ .+.++.-. ...++.+.+ .++++.++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 3689999999999999999998753110 1 111 12222211 111233322 22333333
Q ss_pred CCC------CCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC--CCCcEEEEEccchhhhhhh
Q 002132 267 IPS------SNLGEFQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG--LHGSKILVTTRKKSVASMM 335 (961)
Q Consensus 267 ~~~------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~~~~~~ 335 (961)
... ......+...-.+...+..+.-+++||+--.. +...-..+...+... ..+..||++|.+......+
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 321 01111222223355666677789999987442 222233344444332 2356788888887765543
No 383
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.65 E-value=0.31 Score=47.98 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=32.5
Q ss_pred HHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchhhhhh
Q 002132 282 ISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKSVASM 334 (961)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~~~~~ 334 (961)
+...+-.+.-++++|+--.. +......+...+... ..|..||++|.+......
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 55566667789999987442 333444455544432 236678888888754443
No 384
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.63 E-value=0.11 Score=61.65 Aligned_cols=84 Identities=21% Similarity=0.225 Sum_probs=58.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC-----CCCCHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS-----NLGEFQSLLKLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 283 (961)
.-+++-|+|.+|+||||||.+++.. ....-..++|++....+++. .+++++.... .....++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 4688999999999999999887663 23344678999988877743 6777766532 1223455555555
Q ss_pred HHhC-CceEEEEEeCCC
Q 002132 284 ESIT-GKRFLLVLDDVW 299 (961)
Q Consensus 284 ~~l~-~kr~LlVlDdv~ 299 (961)
..++ ++--|||+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 6554 456689999985
No 385
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.62 E-value=0.032 Score=49.99 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHhcchhhHhcCC
Q 002132 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFD 241 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 241 (961)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 3555563
No 386
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.58 E-value=0.028 Score=56.93 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+..+|+|.|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999884
No 387
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.58 E-value=0.021 Score=55.56 Aligned_cols=25 Identities=48% Similarity=0.635 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcch
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
..+|+|-||-|+||||||+.+++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4789999999999999999999854
No 388
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.58 E-value=0.058 Score=56.37 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=19.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcch
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
+.|.|.|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999998854
No 389
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.56 E-value=0.063 Score=52.63 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 390
>PRK06547 hypothetical protein; Provisional
Probab=94.55 E-value=0.046 Score=53.04 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
....+|.|.|..|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999874
No 391
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.54 E-value=0.2 Score=50.28 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=32.3
Q ss_pred HHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchhhhhhh
Q 002132 282 ISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKSVASMM 335 (961)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~~~~~~ 335 (961)
+.+.+-.+.-++++|+--.. +...-+.+...+... ..|..||++|.+......+
T Consensus 138 laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 138 LLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence 44555566779999997543 222233344444431 2466799999887665543
No 392
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.53 E-value=0.051 Score=50.66 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=28.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD 250 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 250 (961)
++|.|+|..|+|||||++.+.+.. .+..+...+..+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 479999999999999999999964 334555555666665
No 393
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.53 E-value=0.18 Score=58.23 Aligned_cols=133 Identities=14% Similarity=0.060 Sum_probs=72.7
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
..++|....+.++.+.+..-.. ...-|.|.|..|+||+++|+.+++.- .+ .-...+-|++..-. +..+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~S-~r-~~~pfv~inC~~l~--e~lle--- 280 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQLS-GR-RDFPFVAINCGAIA--ESLLE--- 280 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHhc-Cc-CCCCEEEeccccCC--hhHHH---
Confidence 3599999999988887754332 22457899999999999999998742 11 11233444444332 12222
Q ss_pred HHcCCCCCCC-CCHH--HHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEccc
Q 002132 263 EALGIPSSNL-GEFQ--SLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTRK 328 (961)
Q Consensus 263 ~~l~~~~~~~-~~~~--~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 328 (961)
..+.+...+. .... ...-.+ + ....=.|+||++.+........+...+.... ...|||.||..
T Consensus 281 seLFG~~~gaftga~~~~~~Gl~-e--~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 281 AELFGYEEGAFTGARRGGRTGLI-E--AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred HHhcCCcccccccccccccccch-h--hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 1222211100 0000 000000 0 0123358999998876666666777765432 12378887754
Q ss_pred h
Q 002132 329 K 329 (961)
Q Consensus 329 ~ 329 (961)
.
T Consensus 358 ~ 358 (526)
T TIGR02329 358 A 358 (526)
T ss_pred C
Confidence 3
No 394
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.53 E-value=0.34 Score=48.88 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhhh
Q 002132 282 ISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASM 334 (961)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~ 334 (961)
+.+.+-.+.-++++|+-... +....+.+...+.....|..||++|.+......
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 44555566778899987543 333344455555543346678888887766543
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.53 E-value=0.18 Score=56.05 Aligned_cols=38 Identities=34% Similarity=0.369 Sum_probs=27.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEe
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCV 248 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 248 (961)
...+|.++|..|+||||+|.+++...+ ..-..++.|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~--~~G~kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ--RKGFKPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEcC
Confidence 458999999999999999999887432 22224555544
No 396
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.52 E-value=0.0054 Score=71.45 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=29.0
Q ss_pred ccCCCcEEeecCcccccc--cchhhhcccCCceeecCCc
Q 002132 650 ELYNLEKLYITRCLYLEE--LPEGIGKLINMKHLLNYRT 686 (961)
Q Consensus 650 ~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~ 686 (961)
..++|+.|.+.+|..+.. +-......++|+.|+++++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 478899999998876665 4355678899999999874
No 397
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.52 E-value=0.021 Score=50.61 Aligned_cols=22 Identities=45% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHhcch
Q 002132 213 ISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~ 234 (961)
|.|+|.+|+|||+||+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988854
No 398
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.27 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+++|+|..|.|||||++.++.-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999998853
No 399
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.46 E-value=0.2 Score=50.20 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=61.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcch--h-hHhc--CC---------------eEEEEEeCCcccHHHHHHHHHHHcCCCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHV--E-VKRK--FD---------------KLLWVCVSDPFEQFRVAKAIAEALGIPS 269 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~--~-~~~~--f~---------------~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 269 (961)
-.+++|+|..|.|||||.+.++... . ..+. |+ .+.++.-....-......+++... .
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~---~ 102 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV---N 102 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc---c
Confidence 3689999999999999999988741 0 0000 00 022221111000001111122111 0
Q ss_pred CCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchhhhh
Q 002132 270 SNLGEFQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKSVAS 333 (961)
Q Consensus 270 ~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~~~~ 333 (961)
......+...-.+...+-.+.-++++|+--.. +......+...+... ..+..||++|.+.....
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 11222233333455666677789999997542 333344444444432 23667888888877655
No 400
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.45 E-value=0.17 Score=56.42 Aligned_cols=89 Identities=21% Similarity=0.216 Sum_probs=55.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCC-------CCCCCCHHHH---
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIP-------SSNLGEFQSL--- 278 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~l--- 278 (961)
-+.++|+|..|+|||||+.+++..... .+-+.++++-+... ..+.+++.++...-... ..+.....+.
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 357899999999999999998775321 22246777777654 45666666666532221 1122222221
Q ss_pred --HHHHHHHh---CCceEEEEEeCCC
Q 002132 279 --LKLISESI---TGKRFLLVLDDVW 299 (961)
Q Consensus 279 --~~~l~~~l---~~kr~LlVlDdv~ 299 (961)
.-.+.+++ +++++||++|++-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 12244454 6899999999983
No 401
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.45 E-value=0.31 Score=52.40 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=32.5
Q ss_pred HHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhhhh
Q 002132 282 ISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMM 335 (961)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~ 335 (961)
+...+-.+.-+++||+-... |......+...+..-..+..||+||.+...+..+
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~ 198 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAI 198 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHh
Confidence 44556667789999987542 2223333444444333356799999988755443
No 402
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.40 E-value=0.36 Score=49.45 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=32.3
Q ss_pred HHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchhhhhh
Q 002132 282 ISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKSVASM 334 (961)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~~~~~ 334 (961)
+...+-...-++++|+-... +....+.+...+..- ..|..||++|.+......
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~ 189 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQ 189 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 44555566789999987543 333344455544432 236678999988876544
No 403
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.39 E-value=0.38 Score=50.25 Aligned_cols=102 Identities=11% Similarity=0.147 Sum_probs=56.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc-cHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC-
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF-EQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT- 287 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~- 287 (961)
..++.++|.+|+||||+++.+.... ...-..+.+++..... ....-++...+.++.+.....+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 3689999999999999999887743 2222356666654332 22223334444444433233344455544443322
Q ss_pred CceEEEEEeCCCCCC--ccChhhhHHhh
Q 002132 288 GKRFLLVLDDVWDGD--CIKWEPFYLCL 313 (961)
Q Consensus 288 ~kr~LlVlDdv~~~~--~~~~~~l~~~l 313 (961)
.+.=++++|...... ....+++...+
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~ 180 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETM 180 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHH
Confidence 245688899886542 22344444433
No 404
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.39 E-value=0.25 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|..|.|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998764
No 405
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.37 E-value=0.037 Score=56.40 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHhcc
Q 002132 213 ISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~ 233 (961)
|.|+|++|+||||+|+.+++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999998774
No 406
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.36 E-value=0.29 Score=50.07 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|.|..|+|||||++.++..
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 407
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.35 E-value=0.3 Score=49.95 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=31.4
Q ss_pred HHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhhh
Q 002132 282 ISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASM 334 (961)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~ 334 (961)
+.+.+-.+.-++++|+.... +......+...+.....+..||++|.+......
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 44455556679999997543 333344455555543334568888877765543
No 408
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.34 E-value=0.29 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-.+++|+|+.|.|||||++.++.-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999988763
No 409
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.34 E-value=1.4 Score=47.42 Aligned_cols=49 Identities=24% Similarity=0.108 Sum_probs=33.1
Q ss_pred eEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhH
Q 002132 342 IITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAA 391 (961)
Q Consensus 342 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 391 (961)
++++++++.+|+..++....-..--.. ....+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987763322111 1223445667777778998543
No 410
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.34 E-value=0.26 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-.+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999864
No 411
>PRK04328 hypothetical protein; Provisional
Probab=94.31 E-value=0.17 Score=52.68 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=36.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALG 266 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (961)
.-.++.|.|.+|+|||+||.++.... . ..-...+|++.... +.++. +.+++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~--~~~i~-~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH--PVQVR-RNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC--HHHHH-HHHHHcC
Confidence 45789999999999999999877642 2 33567889888764 33433 3344444
No 412
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.51 Score=46.73 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCCCC-ccChhhhHHhhhC-CCCCcEEEEEccchhhhhhhccC
Q 002132 276 QSLLKLISESITGKRFLLVLDDVWDGD-CIKWEPFYLCLKN-GLHGSKILVTTRKKSVASMMGST 338 (961)
Q Consensus 276 ~~l~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~-~~~gs~iivTtR~~~~~~~~~~~ 338 (961)
+.-...+.+.+-=++-+.|||..++.- .+....+...+.. ...|+-+++.|..+.++......
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 334445555555667799999987752 1222223222221 23467788888888888877644
No 413
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.30 E-value=0.079 Score=53.66 Aligned_cols=64 Identities=31% Similarity=0.358 Sum_probs=37.7
Q ss_pred hHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHH
Q 002132 191 ERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVA 258 (961)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (961)
+..++++.+.... ++..+|+|.|++|+|||||...+....+.+.+=-.++=|+=|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 4556666665433 256899999999999999999988865433332334445445555543333
No 414
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.13 Score=56.66 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=55.7
Q ss_pred ceeccc---chHHHHHHHHhcCCcc---cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHH
Q 002132 184 EICGRV---GERNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRV 257 (961)
Q Consensus 184 ~~vGr~---~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 257 (961)
++-|-| .|+++|+++|..+..- +..=.+=|.++|++|.|||-||++++-...+ -+|...+..|+..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V------PFF~~sGSEFdEm-- 376 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV------PFFYASGSEFDEM-- 376 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC------CeEeccccchhhh--
Confidence 445654 5677888888755310 0122356889999999999999999985422 2233333333311
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCC
Q 002132 258 AKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWD 300 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 300 (961)
+ -- .........+...-+.-.++|.+|.++.
T Consensus 377 ~----VG--------vGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 377 F----VG--------VGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred h----hc--------ccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 1 00 1112223333333345589999999865
No 415
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.29 E-value=0.048 Score=59.52 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=58.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhh----HhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEV----KRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISE 284 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~ 284 (961)
..+=+-|||..|.|||.|.-.+|+...+ +-||. ....++-+.+..-...... ...+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~----l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDP----LPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCcc----HHHHHH
Confidence 4567899999999999999999996533 22332 2223332222211111112 233445
Q ss_pred HhCCceEEEEEeCCCCCCccChhhhHHhhhC-CCCCcEEEEEccchhhh
Q 002132 285 SITGKRFLLVLDDVWDGDCIKWEPFYLCLKN-GLHGSKILVTTRKKSVA 332 (961)
Q Consensus 285 ~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~~~~ 332 (961)
.+.++..||.||++.-.+..+---+...+.. ...|. |||+|.|....
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~~P~ 170 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSNRPPE 170 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCCCChH
Confidence 5666677999999865544442223333322 13454 66666665443
No 416
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.28 E-value=0.061 Score=52.40 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999885
No 417
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.27 E-value=0.0018 Score=62.92 Aligned_cols=86 Identities=17% Similarity=0.136 Sum_probs=72.1
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcc
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKL 675 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 675 (961)
+..++..++||++.|. +..+-..+..+..|..|+++.|.|..+|..++.+..+..+++..|. .+.+|.+.+++
T Consensus 38 i~~~kr~tvld~~s~r------~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~ 110 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR------LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKE 110 (326)
T ss_pred hhccceeeeehhhhhH------HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcccccc
Confidence 4567888899999888 6677777778888888999988899999999888888888888776 78889889999
Q ss_pred cCCceeecCCccc
Q 002132 676 INMKHLLNYRTDS 688 (961)
Q Consensus 676 ~~L~~L~l~~~~~ 688 (961)
+.+++++..++..
T Consensus 111 ~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 111 PHPKKNEQKKTEF 123 (326)
T ss_pred CCcchhhhccCcc
Confidence 9999988887753
No 418
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.25 E-value=0.14 Score=53.00 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=55.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhh--HhcCCeEEEEEeCCcc-cHHHHHHHHHHHcCCCC-------CCCCCHHHH-
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEV--KRKFDKLLWVCVSDPF-EQFRVAKAIAEALGIPS-------SNLGEFQSL- 278 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~l- 278 (961)
-+.++|+|-.|+|||+|+.++.++... +.+-+.++++-+.+.. ++.++..++...-.... .+.....+.
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 356799999999999999998885321 1234678888887654 55666666655322111 111111111
Q ss_pred ----HHHHHHHh---CCceEEEEEeCCC
Q 002132 279 ----LKLISESI---TGKRFLLVLDDVW 299 (961)
Q Consensus 279 ----~~~l~~~l---~~kr~LlVlDdv~ 299 (961)
.-.+.+++ ++++.|+++||+.
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 11233443 3789999999984
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.24 E-value=0.054 Score=53.55 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=57.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC---CCCCHHHHHHHHHHHhC-
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS---NLGEFQSLLKLISESIT- 287 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~l~~~l~~~l~- 287 (961)
++.|.|..|.||||+.+.+.-.. +-.+-...+|..-..- ....+++..++.... .......-...+...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a~~~~~----~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPAESAEL----PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeeehheEe----cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 46799999999999999988432 1122222222111000 001111111111110 11111111222333343
Q ss_pred -CceEEEEEeCCCCCCcc-Chhhh----HHhhhCCCCCcEEEEEccchhhhhhhc
Q 002132 288 -GKRFLLVLDDVWDGDCI-KWEPF----YLCLKNGLHGSKILVTTRKKSVASMMG 336 (961)
Q Consensus 288 -~kr~LlVlDdv~~~~~~-~~~~l----~~~l~~~~~gs~iivTtR~~~~~~~~~ 336 (961)
.++-++++|+....... +-..+ ...+.. ..+..+|++|...++...+.
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 37889999998653211 11222 222222 23678999999988776654
No 420
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.23 E-value=0.2 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
++++|.|+.|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 78999999999999999998753
No 421
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.21 E-value=0.054 Score=49.51 Aligned_cols=41 Identities=20% Similarity=0.081 Sum_probs=29.3
Q ss_pred chHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 190 GERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 190 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
++.+++-+.|...-. ...+|.+.|.-|.||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l~----~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD----FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCC----CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344555555543221 33589999999999999999999854
No 422
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.20 E-value=0.066 Score=54.95 Aligned_cols=64 Identities=28% Similarity=0.340 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 193 NELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 193 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
.+++..+.... ++..+|+|.|.||+|||||.-.+....+-+.+--.++=|+-|.+++--.++-+
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 45566565443 36789999999999999999998886544444445666666777766555544
No 423
>PRK06762 hypothetical protein; Provisional
Probab=94.19 E-value=0.036 Score=53.82 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998874
No 424
>PRK03839 putative kinase; Provisional
Probab=94.18 E-value=0.033 Score=54.90 Aligned_cols=22 Identities=45% Similarity=0.776 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 425
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.39 Score=55.83 Aligned_cols=134 Identities=15% Similarity=0.073 Sum_probs=74.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITG 288 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 288 (961)
..+.+.++|++|.|||.||+++++. .+..|- .+... +++...-+ .....+.+.+....+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~--~~~~fi-----~v~~~--------~l~sk~vG-----esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALE--SRSRFI-----SVKGS--------ELLSKWVG-----ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhh--CCCeEE-----EeeCH--------HHhccccc-----hHHHHHHHHHHHHHcC
Confidence 4568899999999999999999993 333332 22221 11111111 1122333344445567
Q ss_pred ceEEEEEeCCCCC-----Cc------cChhhhHHhhhC--CCCCcEEEEEccchhhhhhh-cc--CCcceEEcCCCCHHH
Q 002132 289 KRFLLVLDDVWDG-----DC------IKWEPFYLCLKN--GLHGSKILVTTRKKSVASMM-GS--TDTDIITVMELTEEE 352 (961)
Q Consensus 289 kr~LlVlDdv~~~-----~~------~~~~~l~~~l~~--~~~gs~iivTtR~~~~~~~~-~~--~~~~~~~l~~L~~~~ 352 (961)
....|.+|+++.. .. .....+...+.. ...+..||-||-.+...... -. .-...+.+.+-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 8899999998542 00 112223333322 22333345555544332211 11 112578899999999
Q ss_pred HHHHHHHHHc
Q 002132 353 CWSLFKRLAF 362 (961)
Q Consensus 353 ~~~lf~~~~~ 362 (961)
..+.|+.+.-
T Consensus 415 r~~i~~~~~~ 424 (494)
T COG0464 415 RLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 426
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.15 E-value=0.15 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+..+|.|+|++|+||||||+.+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5579999999999999999999884
No 427
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.15 E-value=0.24 Score=49.71 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=33.6
Q ss_pred HHHHhCCceEEEEEeCCCCC-CccChh-hhHHhhhCCC-C-CcEEEEEccchhhhhh
Q 002132 282 ISESITGKRFLLVLDDVWDG-DCIKWE-PFYLCLKNGL-H-GSKILVTTRKKSVASM 334 (961)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~-~l~~~l~~~~-~-gs~iivTtR~~~~~~~ 334 (961)
+...+..+.-++++|+.... +..... .+...+.... . |..||++|.+......
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 45566778889999998543 222334 4555554432 2 5668888888776543
No 428
>PRK08006 replicative DNA helicase; Provisional
Probab=94.13 E-value=4.4 Score=46.31 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=38.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALG 266 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (961)
.-.++.|-|.+|+|||++|..++.+...+. -..++++ |-..+.+++...++....
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~-g~~V~~f--SlEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQ-DKPVLIF--SLEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCeEEEE--eccCCHHHHHHHHHHHhc
Confidence 346888999999999999999887543222 2234444 455677888888887654
No 429
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.13 E-value=0.11 Score=54.67 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=39.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAE 263 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 263 (961)
.-+++.|+|.+|+|||++|.++... ...+...++||+.... .+++.+.+.+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~--~~~l~~~~~~ 72 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEES--PEELLENARS 72 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCC--HHHHHHHHHH
Confidence 5589999999999999999999884 4556888999998874 3444444433
No 430
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.12 E-value=0.027 Score=33.39 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=14.5
Q ss_pred CCcEEeecCcccccccchhhhc
Q 002132 653 NLEKLYITRCLYLEELPEGIGK 674 (961)
Q Consensus 653 ~L~~L~L~~~~~l~~lp~~i~~ 674 (961)
+|++||+++|. +..+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 47778888886 5577776554
No 431
>PRK05973 replicative DNA helicase; Provisional
Probab=94.12 E-value=0.26 Score=50.16 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=34.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
.-.++.|.|.+|+|||++|.++.... ...-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC--HHHHHHHH
Confidence 34688999999999999999987743 223456777776654 44555554
No 432
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.11 E-value=0.11 Score=60.48 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=72.4
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
..++|....+.++++.+..... .-.-|.|+|..|+||+++|+.+.+.- ...-...+.+++..-.+ ..+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s--~r~~~pfv~inca~~~~--~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS--PRGKKPFLALNCASIPD--DVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC--CCCCCCeEEeccccCCH--HHHHH--
Confidence 3689999888888877654332 12347799999999999999976521 11112345566555331 22221
Q ss_pred HHcCCCCCCC-CCHHHHHHHHHHHh-CCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEccch
Q 002132 263 EALGIPSSNL-GEFQSLLKLISESI-TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTRKK 329 (961)
Q Consensus 263 ~~l~~~~~~~-~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 329 (961)
.+.+..... ....... ...+ ....=.|+||+++.........+...+..+. ...|||.||...
T Consensus 274 -elFG~~~~~~~~~~~~~---~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGK---KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred -HhcCCCCCCcCCcccCC---CChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 222211100 0000000 0001 1123357899998876666667777775531 134788877654
No 433
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.64 Score=53.08 Aligned_cols=51 Identities=24% Similarity=0.214 Sum_probs=32.9
Q ss_pred CceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 183 EEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+++=|-++-+.++.+.+.-+... +-...+-|..+|++|.|||++|+.+++.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 44555665555555443321100 0134567889999999999999999994
No 434
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.09 E-value=0.19 Score=55.75 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=49.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCC-------CCCCCHHHH----
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPS-------SNLGEFQSL---- 278 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~l---- 278 (961)
-..++|+|..|+|||||++.++.... ....++...-.....+.++..+.+..-+... .+.....+.
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 35789999999999999999987431 2223333333334455555555444322211 111122211
Q ss_pred -HHHHHHHh--CCceEEEEEeCCC
Q 002132 279 -LKLISESI--TGKRFLLVLDDVW 299 (961)
Q Consensus 279 -~~~l~~~l--~~kr~LlVlDdv~ 299 (961)
.-.+.+++ ++++.|+++||+-
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 11233444 5889999999984
No 435
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.08 E-value=0.34 Score=49.83 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=32.9
Q ss_pred HHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhhh
Q 002132 281 LISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASM 334 (961)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~ 334 (961)
.+...+-.+.-++++|+-... +......+...+.....+..||++|.+......
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 344555667789999987542 333344455555443346678888888766543
No 436
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.43 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 368999999999999999998774
No 437
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.3 Score=54.93 Aligned_cols=132 Identities=15% Similarity=0.180 Sum_probs=73.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
.=|.+||++|+|||-||++|+|.. +-.| ++|-.+ ++ +...-+ .+.......+.+.-..-.
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEa--g~NF-----isVKGP----EL----lNkYVG-----ESErAVR~vFqRAR~saP 605 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEA--GANF-----ISVKGP----EL----LNKYVG-----ESERAVRQVFQRARASAP 605 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhc--cCce-----EeecCH----HH----HHHHhh-----hHHHHHHHHHHHhhcCCC
Confidence 447899999999999999999953 3333 444332 12 221111 111222333334444679
Q ss_pred EEEEEeCCCCC-----CccCh------hhhHHhhhC--CCCCcEEEEEccchhhhhhh--ccCC-cceEEcCCCCHHHHH
Q 002132 291 FLLVLDDVWDG-----DCIKW------EPFYLCLKN--GLHGSKILVTTRKKSVASMM--GSTD-TDIITVMELTEEECW 354 (961)
Q Consensus 291 ~LlVlDdv~~~-----~~~~~------~~l~~~l~~--~~~gs~iivTtR~~~~~~~~--~~~~-~~~~~l~~L~~~~~~ 354 (961)
++|+||.++.. +...| ..++.-+.. ...|.-||-.|..+++-... ..+. .....+..-+.+|-.
T Consensus 606 CVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~ 685 (802)
T KOG0733|consen 606 CVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERV 685 (802)
T ss_pred eEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHH
Confidence 99999998642 11112 122222221 23566677777666543321 1111 245677777888888
Q ss_pred HHHHHHHc
Q 002132 355 SLFKRLAF 362 (961)
Q Consensus 355 ~lf~~~~~ 362 (961)
++++...-
T Consensus 686 ~ILK~~tk 693 (802)
T KOG0733|consen 686 AILKTITK 693 (802)
T ss_pred HHHHHHhc
Confidence 89888764
No 438
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.07 E-value=0.21 Score=52.15 Aligned_cols=129 Identities=16% Similarity=0.088 Sum_probs=66.3
Q ss_pred hHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCC-C
Q 002132 191 ERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIP-S 269 (961)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-~ 269 (961)
..+.++..+... +...-++|+|..|.|||||.+.++... ......+++.-..- ...+-..++......- .
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKV-GIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEe-ecchhHHHHHHHhccccc
Confidence 344555555432 245789999999999999999999843 22233444321110 0001112333222111 1
Q ss_pred C------CCC-CHHHHHHHHHHHhC-CceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhhh
Q 002132 270 S------NLG-EFQSLLKLISESIT-GKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASM 334 (961)
Q Consensus 270 ~------~~~-~~~~l~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~ 334 (961)
. +.. .... ..-+...+. ...-++++|.+... +.+..+...+. .|..||+||....+...
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 0 000 0111 111222222 46779999998543 33444544443 47789999987666443
No 439
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.06 E-value=0.04 Score=54.76 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+.++|.|+|++|+||||+|+.++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999863
No 440
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.00 E-value=0.19 Score=55.97 Aligned_cols=87 Identities=18% Similarity=0.114 Sum_probs=48.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCC------CCCCCCHHHH-----
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIP------SSNLGEFQSL----- 278 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~------~~~~~~~~~l----- 278 (961)
-..++|+|..|+|||||++.+.... .....+++..-....++.++....+...-.. ..+.......
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 3578999999999999999888742 2223455554334445554444443332111 1111111111
Q ss_pred HHHHHHHh--CCceEEEEEeCCC
Q 002132 279 LKLISESI--TGKRFLLVLDDVW 299 (961)
Q Consensus 279 ~~~l~~~l--~~kr~LlVlDdv~ 299 (961)
.-.+.+++ +++.+|+++||+-
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchH
Confidence 11223333 4889999999983
No 441
>PRK00625 shikimate kinase; Provisional
Probab=93.99 E-value=0.036 Score=53.75 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 442
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.99 E-value=1.2 Score=47.05 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=49.8
Q ss_pred CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHH
Q 002132 287 TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKR 359 (961)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 359 (961)
.+++-++|+|+++......+..+...+.....++.+|++|.+.. +...+.+. ...+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SR-cq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSR-TQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHc-ceeeeCCC-cHHHHHHHHHH
Confidence 36677999999999888889999999988777777777776553 33222221 26677766 66666666653
No 443
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.17 Score=51.24 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=32.1
Q ss_pred HHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC--CCCcEEEEEccchhhhhh
Q 002132 282 ISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG--LHGSKILVTTRKKSVASM 334 (961)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~~~~~ 334 (961)
+...+-.+.-++++|+-... +......+...+..- ..|..||++|.+......
T Consensus 139 ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 44455566778999987543 333445555555432 236678888887765543
No 444
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.97 E-value=0.4 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|..|.|||||++.++-.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 57999999999999999998864
No 445
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=1.1 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcch
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
|=-.++|++|.|||+++.+++|..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 346799999999999999999953
No 446
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.95 E-value=0.16 Score=56.84 Aligned_cols=89 Identities=18% Similarity=0.177 Sum_probs=56.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCC-------CCCCCCHHH----
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIP-------SSNLGEFQS---- 277 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 277 (961)
-+.++|+|.+|+|||||+.++++... +.+-+.++++-+... ..+.++..++...-... ..+.....+
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 35789999999999999999988643 235678888877654 45566666665432211 111221221
Q ss_pred -HHHHHHHHh---CCceEEEEEeCCC
Q 002132 278 -LLKLISESI---TGKRFLLVLDDVW 299 (961)
Q Consensus 278 -l~~~l~~~l---~~kr~LlVlDdv~ 299 (961)
..-.+.+++ +++++|+++|++-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccch
Confidence 112234444 4899999999993
No 447
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.91 E-value=0.34 Score=48.61 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-.+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999988764
No 448
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.90 E-value=0.37 Score=51.84 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
+..++.++|++|+||||++.+++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998854
No 449
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.89 E-value=0.1 Score=57.06 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=48.7
Q ss_pred CceecccchHHHHHHHHhcC--------CcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC---CeEEEEEeCC-
Q 002132 183 EEICGRVGERNELLSKLLCE--------SSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF---DKLLWVCVSD- 250 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~- 250 (961)
..++|.+..++.+..++... .....-..+.|.++|+.|+|||+||+.+.... ...| +...|...+.
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l--~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh--CChheeecchhhccCCcc
Confidence 45889998888887777431 00001123678999999999999999998842 3333 2222222111
Q ss_pred cccHHHHHHHHHHHc
Q 002132 251 PFEQFRVAKAIAEAL 265 (961)
Q Consensus 251 ~~~~~~~~~~i~~~l 265 (961)
..+.+.+++.+.+..
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 225556666665544
No 450
>PRK04040 adenylate kinase; Provisional
Probab=93.87 E-value=0.044 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|.|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999884
No 451
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.87 E-value=0.61 Score=51.61 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=31.3
Q ss_pred HHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhC-CCCCcEEEEEccchhhhhhh
Q 002132 281 LISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKN-GLHGSKILVTTRKKSVASMM 335 (961)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~~~~~~ 335 (961)
-+.+.+-+..+|+|||+=... |.+-=..+...+.. ...|.-+|+.|..+.+...+
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 466788899999999976432 11111223334332 33566666666666555443
No 452
>PRK15453 phosphoribulokinase; Provisional
Probab=93.84 E-value=0.31 Score=50.50 Aligned_cols=77 Identities=23% Similarity=0.198 Sum_probs=44.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc--cHHHHHHHHH--HHcC--CCC--CCCCCHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF--EQFRVAKAIA--EALG--IPS--SNLGEFQSLLK 280 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~--~~l~--~~~--~~~~~~~~l~~ 280 (961)
+..+|+|.|.+|+||||+|+.+.+. .+..-...+.++...-. +....-..+. +.-+ ... ++..+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 5689999999999999999988863 22211124444443322 3222222221 1111 122 45566777777
Q ss_pred HHHHHhC
Q 002132 281 LISESIT 287 (961)
Q Consensus 281 ~l~~~l~ 287 (961)
.++.+.+
T Consensus 82 ~l~~l~~ 88 (290)
T PRK15453 82 LFREYGE 88 (290)
T ss_pred HHHHHhc
Confidence 7777655
No 453
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.83 E-value=0.39 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|.|||||++.++.-
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998763
No 454
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.83 E-value=0.052 Score=61.11 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=53.1
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEE-EEeCCcc-cHHHHHHHHHHHcCCC---
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLW-VCVSDPF-EQFRVAKAIAEALGIP--- 268 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~s~~~-~~~~~~~~i~~~l~~~--- 268 (961)
++++.+..-. +-....|+|.+|+|||||++.+++.. ...+-++.++ +-|.... .+.+ |-..+...
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERpeEVtd----m~rsVkgeVVa 474 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERPEEVTD----MQRSVKGEVIA 474 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCchhhHHH----HHHhccceEEE
Confidence 4566665433 33567899999999999999999853 2224444433 3344433 2322 33333111
Q ss_pred -CCCCCC-----HHHHHHHHHHHh--CCceEEEEEeCCC
Q 002132 269 -SSNLGE-----FQSLLKLISESI--TGKRFLLVLDDVW 299 (961)
Q Consensus 269 -~~~~~~-----~~~l~~~l~~~l--~~kr~LlVlDdv~ 299 (961)
..+... ...+.-.+.+++ .++.+||++|++-
T Consensus 475 sT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 475 STFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 111111 111222233444 5899999999983
No 455
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.83 E-value=0.16 Score=56.15 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=51.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc-cHHHHHHHHHHHcCCC-------CCCCCCHHHH---
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF-EQFRVAKAIAEALGIP-------SSNLGEFQSL--- 278 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~l--- 278 (961)
-..++|+|..|+|||||++.+++.. ..+.++.+-+.... .+.++...++..-... ..+.......
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998742 23566666665543 4455655554432211 1111111111
Q ss_pred --HHHHHHHh--CCceEEEEEeCCC
Q 002132 279 --LKLISESI--TGKRFLLVLDDVW 299 (961)
Q Consensus 279 --~~~l~~~l--~~kr~LlVlDdv~ 299 (961)
.-.+.+++ +++++|+++||+-
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChH
Confidence 11133333 5899999999983
No 456
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.66 Score=47.89 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=32.8
Q ss_pred HHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhhh
Q 002132 281 LISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASM 334 (961)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~ 334 (961)
.+...+-.+.-+++||+--.. +....+.+...+..-..+..||++|.+......
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 344555556678999987442 333444555555443346678888888766543
No 457
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.82 E-value=0.29 Score=51.97 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=32.8
Q ss_pred HHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC--CCCcEEEEEccchhhhh
Q 002132 281 LISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG--LHGSKILVTTRKKSVAS 333 (961)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~~~~ 333 (961)
.|.+.+-.++-++++|+.... +......+...+..- ..|..||++|.+.....
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA 205 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 355566667789999997553 222334444444432 23677888888876654
No 458
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.48 Score=49.01 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=33.9
Q ss_pred HHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhhh
Q 002132 281 LISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASM 334 (961)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~ 334 (961)
.+...+-.+.-+++||+-... +......+...+.....|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 345566667789999997543 333344455555443336678888888776643
No 459
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.80 E-value=0.33 Score=57.94 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=69.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceE
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRF 291 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~ 291 (961)
-|.++|++|+|||++|+.+++.. ...| +.++.+. +.. .... .....+...+.......+.
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~~~----~~~g-----~~~~~~~~~f~~a~~~~P~ 246 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------FVE----MFVG-----VGASRVRDMFEQAKKAAPC 246 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------hHH----hhhc-----ccHHHHHHHHHHHHhcCCc
Confidence 48899999999999999998742 2222 2222221 111 1100 1112333334444445678
Q ss_pred EEEEeCCCCCC----------ccChhhhHHhh----hC--CCCCcEEEEEccchhhhhhhcc--C-CcceEEcCCCCHHH
Q 002132 292 LLVLDDVWDGD----------CIKWEPFYLCL----KN--GLHGSKILVTTRKKSVASMMGS--T-DTDIITVMELTEEE 352 (961)
Q Consensus 292 LlVlDdv~~~~----------~~~~~~l~~~l----~~--~~~gs~iivTtR~~~~~~~~~~--~-~~~~~~l~~L~~~~ 352 (961)
+|++|+++... ...+......+ .. ...+.-||.||...+.....-. . -.+.+.+..-+.++
T Consensus 247 IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 247 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred EEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 99999986531 11222222222 11 1234455557776653222111 1 12567888888888
Q ss_pred HHHHHHHHH
Q 002132 353 CWSLFKRLA 361 (961)
Q Consensus 353 ~~~lf~~~~ 361 (961)
-.++++.+.
T Consensus 327 R~~Il~~~~ 335 (644)
T PRK10733 327 REQILKVHM 335 (644)
T ss_pred HHHHHHHHh
Confidence 888887765
No 460
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.18 Score=54.08 Aligned_cols=82 Identities=28% Similarity=0.432 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCC-----CCCHHHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSN-----LGEFQSLLKLISE 284 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~~l~~ 284 (961)
-.+|.|-|-+|||||||.-+++.+. ...- .+++|+-...... .+--++.++....+ ..+++.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~l--A~~~-~vLYVsGEES~~Q---iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARL--AKRG-KVLYVSGEESLQQ---IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHH--HhcC-cEEEEeCCcCHHH---HHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 4789999999999999999999854 3333 7888876654432 23345666654432 2344444443333
Q ss_pred HhCCceEEEEEeCCCC
Q 002132 285 SITGKRFLLVLDDVWD 300 (961)
Q Consensus 285 ~l~~kr~LlVlDdv~~ 300 (961)
.+.-++|+|-+..
T Consensus 167 ---~~p~lvVIDSIQT 179 (456)
T COG1066 167 ---EKPDLVVIDSIQT 179 (456)
T ss_pred ---cCCCEEEEeccce
Confidence 5678999999854
No 461
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.75 E-value=0.27 Score=48.97 Aligned_cols=42 Identities=31% Similarity=0.470 Sum_probs=29.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcC--------CeEEEEEeCCcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKF--------DKLLWVCVSDPF 252 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~s~~~ 252 (961)
.++.|+|.+|+||||++..++........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 478899999999999999888765332222 368888877763
No 462
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.21 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
-.+++|+|..|.|||||++.++-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999985
No 463
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.73 E-value=0.37 Score=48.87 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-.+++|+|..|.|||||.+.++.-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 464
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.73 E-value=0.27 Score=54.68 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=51.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCC-------CCCCCCHHHH---
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIP-------SSNLGEFQSL--- 278 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~l--- 278 (961)
-..++|+|..|+|||||++.+++.. ..+.++++-+... ..+.++..+.+..-+.. ..+.......
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999998843 2345555666554 34445555444432221 1111112211
Q ss_pred --HHHHHHHh--CCceEEEEEeCCC
Q 002132 279 --LKLISESI--TGKRFLLVLDDVW 299 (961)
Q Consensus 279 --~~~l~~~l--~~kr~LlVlDdv~ 299 (961)
.-.+.+++ +++++|+++||+-
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 11233343 5899999999994
No 465
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.70 E-value=0.19 Score=54.14 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=25.7
Q ss_pred EEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC
Q 002132 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD 250 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 250 (961)
+.+.|++|.||||+++.+.+.......+ .+++++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcccc
Confidence 5789999999999999998854322222 355555444
No 466
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.68 E-value=0.33 Score=48.44 Aligned_cols=116 Identities=19% Similarity=0.174 Sum_probs=59.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEE---------------eCCcc---cHHHHHHHHH--HHcCCCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVC---------------VSDPF---EQFRVAKAIA--EALGIPS 269 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------~s~~~---~~~~~~~~i~--~~l~~~~ 269 (961)
-.+++|.|..|.|||||.+.++.-.. .......+++. +.+.. ....+...+. ..+.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--- 110 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---
Confidence 36899999999999999999987420 01112222211 11111 0011111111 1110
Q ss_pred CCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchh
Q 002132 270 SNLGEFQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKS 330 (961)
Q Consensus 270 ~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~ 330 (961)
.....+...-.+...+-.+.-++++|+--.. +......+...+... ..|..||++|.+..
T Consensus 111 -~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 111 -GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 1122222223445556666779999987542 333444455555432 23667888888764
No 467
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.66 E-value=0.079 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|.|..|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 68999999999999999999843
No 468
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.63 E-value=0.4 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-.+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 26 GSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998764
No 469
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.11 Score=51.84 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=56.4
Q ss_pred CceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
+++=|-.+.++++.+....+--. +-+..+-|.++|++|.|||-+|++|+| +....| +.|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf-----irv------- 242 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF-----IRV------- 242 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE-----Eee-------
Confidence 34556677777776654322100 012345678999999999999999999 444444 222
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC-CceEEEEEeCCC
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESIT-GKRFLLVLDDVW 299 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~-~kr~LlVlDdv~ 299 (961)
+-.++.+..- .+.....+.+.+.-+ .|-++|.+|.++
T Consensus 243 -igselvqkyv------gegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 243 -IGSELVQKYV------GEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred -hhHHHHHHHh------hhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 1223333321 123345555555555 456888899884
No 470
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.60 E-value=0.48 Score=56.65 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=31.8
Q ss_pred HHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCC-CCcEEEEEccchhhhh
Q 002132 281 LISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGL-HGSKILVTTRKKSVAS 333 (961)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~-~gs~iivTtR~~~~~~ 333 (961)
.|.+.+-.++-+|+||+.-.. |.+.=..+...+.... ..+.|+||=|...+..
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 456777788899999998543 2222233555555433 3566777777665433
No 471
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.60 E-value=0.18 Score=51.71 Aligned_cols=76 Identities=21% Similarity=0.155 Sum_probs=43.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCccc--HHHHHHHHHHH----cCCCC--CCCCCHHHHHHHHH
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFE--QFRVAKAIAEA----LGIPS--SNLGEFQSLLKLIS 283 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~----l~~~~--~~~~~~~~l~~~l~ 283 (961)
+|+|.|..|+||||+|+.+.... +..-..++.++...-.. -...-..+... ..-.. ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l--~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF--AREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--HhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 58999999999999999888743 22222344554433222 11222122221 12222 45566777777777
Q ss_pred HHhCCc
Q 002132 284 ESITGK 289 (961)
Q Consensus 284 ~~l~~k 289 (961)
.+.+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 776654
No 472
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.57 E-value=0.61 Score=48.01 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=64.7
Q ss_pred ceecccchHHHHHHHH----hcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 184 EICGRVGERNELLSKL----LCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L----~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
.++|..-..+.++..+ .... ..+.-|++.+|..|+||.-+++.++++..-..--. ....
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~---p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S--------------~~V~ 145 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN---PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS--------------PFVH 145 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC---CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc--------------hhHH
Confidence 4667555555555544 3333 45778999999999999999999998642111000 0111
Q ss_pred HHHHHcCCCCCCCC--CHHHHHHHHHHHhC-CceEEEEEeCCCCCCccChhhhHHhhh
Q 002132 260 AIAEALGIPSSNLG--EFQSLLKLISESIT-GKRFLLVLDDVWDGDCIKWEPFYLCLK 314 (961)
Q Consensus 260 ~i~~~l~~~~~~~~--~~~~l~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~ 314 (961)
.......-+..... -.+++...++..++ -+|-|+|+|+++.....-.+.+..++.
T Consensus 146 ~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 146 HFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 11111111111110 01234444444443 468999999998876556666666655
No 473
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.57 E-value=0.41 Score=50.74 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=32.4
Q ss_pred HHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchhhhhh
Q 002132 281 LISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKSVASM 334 (961)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~~~~~ 334 (961)
.+...+-.+.-++++|+.... +......+...+..- ..|..||++|.+...+..
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 355566677789999997543 223334444444332 236678888888776543
No 474
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=0.37 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|..|.|||||.+.++..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998875
No 475
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.54 E-value=0.093 Score=61.59 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
-.+++|.+..++.+...+... +.+.++|.+|+||||+|+.+.+.. ...+++..+|..- ...+...+++.+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v 99 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTV 99 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHH
Confidence 346889888888887766521 368899999999999999998753 2344677888665 344677788888
Q ss_pred HHHcCC
Q 002132 262 AEALGI 267 (961)
Q Consensus 262 ~~~l~~ 267 (961)
+.+++.
T Consensus 100 ~~~~G~ 105 (637)
T PRK13765 100 PAGKGK 105 (637)
T ss_pred HHhcCH
Confidence 776654
No 476
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.53 E-value=0.51 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|.|||||.+.++.-
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 477
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.51 E-value=0.47 Score=53.84 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=31.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP 251 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 251 (961)
.-.++.|.|.+|+|||||+.+++... ...-..++|++....
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~--a~~g~~vlYvs~Ees 119 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARL--AAAGGKVLYVSGEES 119 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcccc
Confidence 34699999999999999999998853 223346788876553
No 478
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.51 E-value=0.095 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.-+|.++.|+.|+||||+.+.+-+
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHh
Confidence 458999999999999999987643
No 479
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=93.50 E-value=0.65 Score=48.02 Aligned_cols=53 Identities=11% Similarity=0.200 Sum_probs=32.7
Q ss_pred HHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhhh
Q 002132 282 ISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASM 334 (961)
Q Consensus 282 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~ 334 (961)
+...+-.+.-++++|+-... +......+...+..-..|..||++|.+......
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 44445556679999997543 333344455555443346678888888876643
No 480
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.48 E-value=0.32 Score=52.76 Aligned_cols=89 Identities=25% Similarity=0.315 Sum_probs=54.9
Q ss_pred CeEEEEEEcCCCchHHH-HHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Q 002132 209 GLHIISIVGMGGIGKTT-LAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESI 286 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l 286 (961)
+.++|.+||+.|||||| ||+..+... ....=..++.|+.... ....+-++..++-++.+-.-..+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 46899999999999965 566555532 1233345777776542 3445556667777777765555666655555443
Q ss_pred CCceEEEEEeCCCC
Q 002132 287 TGKRFLLVLDDVWD 300 (961)
Q Consensus 287 ~~kr~LlVlDdv~~ 300 (961)
++. =+|.+|-+..
T Consensus 280 ~~~-d~ILVDTaGr 292 (407)
T COG1419 280 RDC-DVILVDTAGR 292 (407)
T ss_pred hcC-CEEEEeCCCC
Confidence 332 4566676644
No 481
>PF13479 AAA_24: AAA domain
Probab=93.47 E-value=0.19 Score=50.84 Aligned_cols=31 Identities=39% Similarity=0.368 Sum_probs=24.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP 251 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 251 (961)
-.+.|+|.+|+||||+|..+ +..+++.....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 45789999999999999865 44667766554
No 482
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.47 E-value=0.51 Score=48.27 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=32.7
Q ss_pred HHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC-CCCcEEEEEccchhhhhh
Q 002132 281 LISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG-LHGSKILVTTRKKSVASM 334 (961)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~-~~gs~iivTtR~~~~~~~ 334 (961)
.+.+.+-.+.-++++|+-... +......+...+... ..|..||++|.+......
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 355566667789999987442 333344455554432 246678888888764433
No 483
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.46 E-value=0.1 Score=53.53 Aligned_cols=49 Identities=29% Similarity=0.279 Sum_probs=32.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
.-.++.|.|.+|+|||+||.++.... .+..-+.++|++...+. +++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~~--~~l~~~ 66 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEPP--EELIEN 66 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-H--HHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCCH--HHHHHH
Confidence 34689999999999999999877532 22214568888876643 444444
No 484
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.46 E-value=0.36 Score=52.64 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=34.0
Q ss_pred HHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC--CCCcEEEEEccchhhhhhhc
Q 002132 281 LISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG--LHGSKILVTTRKKSVASMMG 336 (961)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~~~~~~~ 336 (961)
.|.+.|....-++++|+.-.. |...-..+...+..- ..|..||++|.+.++...++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~ 208 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRIC 208 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 355666677889999997543 222233344444432 23667888888887765543
No 485
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.44 E-value=0.11 Score=52.65 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=61.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC---CC----CCHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS---NL----GEFQSLLKLI 282 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~----~~~~~l~~~l 282 (961)
.+++.|.|+.|.||||+.+.+.-.. +..+-...+|..-.. . ..+..|...++.... +. .++.++...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~~-~---~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSAT-L---SIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCceE-E---eccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 4688999999999999999887742 222222333332110 0 011111111111111 11 1222333333
Q ss_pred HHHhCCceEEEEEeCCCCCCc-c---C-hhhhHHhhhCCCCCcEEEEEccchhhhhhh
Q 002132 283 SESITGKRFLLVLDDVWDGDC-I---K-WEPFYLCLKNGLHGSKILVTTRKKSVASMM 335 (961)
Q Consensus 283 ~~~l~~kr~LlVlDdv~~~~~-~---~-~~~l~~~l~~~~~gs~iivTtR~~~~~~~~ 335 (961)
.. .+++-|+++|+...... . . -..+...+... .++.+|++|....++...
T Consensus 106 ~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred Hh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 22 25689999999754321 1 1 11233333332 578899999999887655
No 486
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.42 E-value=0.39 Score=48.78 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.|.|+|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999988763
No 487
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.42 E-value=1.4 Score=41.45 Aligned_cols=86 Identities=19% Similarity=0.175 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHHcCCCC------CCCCCHHHHHHHHHHHhCCceEEEEEeCCC-CCCccChhhhHHhhh--CCCCCcEE
Q 002132 252 FEQFRVAKAIAEALGIPS------SNLGEFQSLLKLISESITGKRFLLVLDDVW-DGDCIKWEPFYLCLK--NGLHGSKI 322 (961)
Q Consensus 252 ~~~~~~~~~i~~~l~~~~------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~-~~~~~~~~~l~~~l~--~~~~gs~i 322 (961)
.+.....+..+.+++... .+....++-.-.|.+.+....-+++-|.-- +.+...=+.+.+.+- +...|+..
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~Tl 200 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTL 200 (228)
T ss_pred ccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceE
Confidence 455666777888877642 223344555666788888888888888642 112222233333322 34578889
Q ss_pred EEEccchhhhhhhcc
Q 002132 323 LVTTRKKSVASMMGS 337 (961)
Q Consensus 323 ivTtR~~~~~~~~~~ 337 (961)
++.|.++.+|..|..
T Consensus 201 VlVTHD~~LA~Rc~R 215 (228)
T COG4181 201 VLVTHDPQLAARCDR 215 (228)
T ss_pred EEEeCCHHHHHhhhh
Confidence 999999999998764
No 488
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.42 E-value=0.17 Score=50.70 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHh
Q 002132 210 LHIISIVGMGGIGKTTLAQLAC 231 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~ 231 (961)
-+++.|.|+.|.|||||.+.+.
T Consensus 28 ~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 28 KRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 3789999999999999999987
No 489
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.38 E-value=0.58 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-.+++|+|..|.|||||.+.++--
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999988764
No 490
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.38 E-value=0.47 Score=50.68 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=41.7
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHH
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIA 262 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~ 262 (961)
++++.+..-. +-+.++|.|..|+|||+|++++++.. +-+.++++-+... ..+.+++.++-
T Consensus 146 rvID~l~Pi~-----kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 146 RVLDTLFPVV-----KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhhcccccc-----CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 4555555433 33578999999999999999999853 3467888888664 44555555543
No 491
>PRK08840 replicative DNA helicase; Provisional
Probab=93.36 E-value=7.8 Score=44.25 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=39.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGI 267 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (961)
.-..+.|-|.+|+|||++|..++.+...+. -..+++. |-..+.+++...++.....
T Consensus 216 ~g~LiviaarPg~GKTafalnia~~~a~~~-~~~v~~f--SlEMs~~ql~~Rlla~~s~ 271 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQ-DKPVLIF--SLEMPAEQLMMRMLASLSR 271 (464)
T ss_pred CCceEEEEeCCCCchHHHHHHHHHHHHHhC-CCeEEEE--eccCCHHHHHHHHHHhhCC
Confidence 346788999999999999988887542222 2345555 4446778888888877643
No 492
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.36 E-value=0.45 Score=53.07 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=55.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCC-------CCCCCCHHHH---
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIP-------SSNLGEFQSL--- 278 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~l--- 278 (961)
-+.++|.|..|+|||||+.++..... ..+-+.++++-+... ..+.+++.++...-... ..+.....+.
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIA-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHH-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999887532 223346777777654 45566766665432111 1112122221
Q ss_pred --HHHHHHHh---CCceEEEEEeCCC
Q 002132 279 --LKLISESI---TGKRFLLVLDDVW 299 (961)
Q Consensus 279 --~~~l~~~l---~~kr~LlVlDdv~ 299 (961)
.-.+.+++ +++++||++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchh
Confidence 12244554 5789999999994
No 493
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.34 E-value=0.26 Score=50.79 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-.+++|+|..|.|||||++.++--
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 25 GERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999988653
No 494
>PRK05922 type III secretion system ATPase; Validated
Probab=93.32 E-value=0.44 Score=52.98 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=48.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHHHHHHcCCCC-------CCCCCHHH-----
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKAIAEALGIPS-------SNLGEFQS----- 277 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~~----- 277 (961)
..++|+|..|+|||||.+.+.+.. ..+....+-++. ..++.+.+.+......... .+......
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 568999999999999999998742 233334433333 2334445544443332221 11111111
Q ss_pred HHHHHHHHh--CCceEEEEEeCCC
Q 002132 278 LLKLISESI--TGKRFLLVLDDVW 299 (961)
Q Consensus 278 l~~~l~~~l--~~kr~LlVlDdv~ 299 (961)
..-.+.+++ +++++|+++||+-
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchh
Confidence 111233444 4899999999994
No 495
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.30 E-value=0.16 Score=55.41 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=66.1
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHH
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAE 263 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 263 (961)
.++|+++....+...+... +-+.+.|.+|+|||+||+.++... . -...+|.+.....+.+++....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~l--~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARAL--G---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHHh--C---CCeEEEecCCCCCHHHhcCchhH
Confidence 4888888888877776643 347899999999999999999842 2 34566677776666665543322
Q ss_pred HcCCCCCCCCCHHHHHHHHHHHhC-----CceEEEEEeCCCCCCccChhhhHHhhhC
Q 002132 264 ALGIPSSNLGEFQSLLKLISESIT-----GKRFLLVLDDVWDGDCIKWEPFYLCLKN 315 (961)
Q Consensus 264 ~l~~~~~~~~~~~~l~~~l~~~l~-----~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 315 (961)
........ ...+.. .-+.++.+|.++......-..+...+..
T Consensus 92 ~~~~~~~~----------~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 92 AALLLEPG----------EFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred hhhhccCC----------eEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 21100000 000011 1115999999988765444445555443
No 496
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.29 E-value=0.05 Score=54.59 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+|+|.|..|+||||||+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998773
No 497
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.27 E-value=0.06 Score=52.97 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
No 498
>PRK13409 putative ATPase RIL; Provisional
Probab=93.27 E-value=0.53 Score=55.59 Aligned_cols=124 Identities=18% Similarity=0.123 Sum_probs=65.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEE--E---eCCc------ccHHHH-------------HHHHHHHc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWV--C---VSDP------FEQFRV-------------AKAIAEAL 265 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv--~---~s~~------~~~~~~-------------~~~i~~~l 265 (961)
-.+++|+|..|+|||||++.++-... ...+.+++ . +.+. .++.+. ..++++.+
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l 441 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL 441 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC
Confidence 36899999999999999999987421 11111211 1 1111 122222 22334444
Q ss_pred CCCC------CCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC--CCCcEEEEEccchhhhhhhc
Q 002132 266 GIPS------SNLGEFQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG--LHGSKILVTTRKKSVASMMG 336 (961)
Q Consensus 266 ~~~~------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~iivTtR~~~~~~~~~ 336 (961)
+... ...+..+...-.+...+..+.-+++||+--.. |...-..+...+..- ..|..||++|.+...+..+.
T Consensus 442 ~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a 521 (590)
T PRK13409 442 QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS 521 (590)
T ss_pred CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 3321 11122223333455666777889999986432 222333344444432 23566888888877665543
No 499
>PF13245 AAA_19: Part of AAA domain
Probab=93.26 E-value=0.18 Score=41.25 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=16.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
+++.|.|.+|.|||+++.....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6788899999999955544444
No 500
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.25 E-value=0.052 Score=53.23 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
Done!