Query 002132
Match_columns 961
No_of_seqs 552 out of 4660
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 13:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.9E-48 9.9E-53 453.3 19.9 317 186-529 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.2E-38 4.3E-43 372.3 22.0 286 184-521 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-37 7.4E-42 402.8 24.1 313 180-527 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.8E-34 2.7E-38 337.4 27.3 306 182-525 123-450 (591)
5 3rgz_A Protein brassinosteroid 99.9 6.4E-28 2.2E-32 294.8 14.3 369 547-958 269-711 (768)
6 4eco_A Uncharacterized protein 99.9 1.5E-27 5.3E-32 284.4 15.5 326 594-958 200-594 (636)
7 3rgz_A Protein brassinosteroid 99.9 2.5E-27 8.4E-32 289.6 15.3 353 568-959 267-688 (768)
8 4ecn_A Leucine-rich repeat pro 99.9 1.9E-26 6.3E-31 279.0 17.8 325 595-959 443-835 (876)
9 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-25 5.7E-30 267.3 24.0 376 545-959 30-481 (606)
10 4ecn_A Leucine-rich repeat pro 99.9 5.2E-26 1.8E-30 275.1 19.2 353 547-944 448-844 (876)
11 4eco_A Uncharacterized protein 99.9 7.7E-26 2.6E-30 269.8 15.8 356 546-943 205-603 (636)
12 3t6q_A CD180 antigen; protein- 99.9 3.6E-25 1.2E-29 264.4 20.7 370 545-959 31-484 (606)
13 3vq2_A TLR4, TOLL-like recepto 99.9 4.5E-25 1.5E-29 263.6 20.3 351 570-959 32-456 (606)
14 3o6n_A APL1; leucine-rich repe 99.9 9.4E-25 3.2E-29 245.3 19.4 308 567-941 42-353 (390)
15 2z81_A CD282 antigen, TOLL-lik 99.9 2.6E-25 8.8E-30 262.4 15.2 149 546-706 25-178 (549)
16 2z7x_B TOLL-like receptor 1, v 99.9 8.3E-25 2.8E-29 256.0 19.2 367 547-957 21-474 (520)
17 2z63_A TOLL-like receptor 4, v 99.9 1.3E-24 4.5E-29 257.7 20.6 377 545-959 26-478 (570)
18 3v47_A TOLL-like receptor 5B a 99.9 1.3E-24 4.6E-29 249.8 18.7 365 545-944 28-412 (455)
19 1o6v_A Internalin A; bacterial 99.9 4.7E-24 1.6E-28 245.4 22.8 330 547-941 46-389 (466)
20 3t6q_A CD180 antigen; protein- 99.9 2.1E-24 7.1E-29 257.8 20.5 251 672-953 274-526 (606)
21 4fmz_A Internalin; leucine ric 99.9 1.3E-24 4.5E-29 240.1 17.2 305 567-939 41-345 (347)
22 3j0a_A TOLL-like receptor 5; m 99.9 4.7E-24 1.6E-28 263.4 23.7 282 545-852 22-373 (844)
23 3oja_B Anopheles plasmodium-re 99.9 2E-24 6.8E-29 256.2 19.4 308 567-941 48-359 (597)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.6E-24 1.9E-28 251.1 20.8 149 791-958 350-504 (562)
25 1ziw_A TOLL-like receptor 3; i 99.9 6E-24 2E-28 257.4 20.2 381 545-958 23-461 (680)
26 2z63_A TOLL-like receptor 4, v 99.9 2.2E-24 7.4E-29 255.9 14.8 383 546-958 51-525 (570)
27 2z7x_B TOLL-like receptor 1, v 99.9 2.2E-24 7.5E-29 252.4 14.4 346 546-941 44-482 (520)
28 3v47_A TOLL-like receptor 5B a 99.9 1.1E-23 3.7E-28 242.2 18.1 352 570-959 30-403 (455)
29 2id5_A Lingo-1, leucine rich r 99.9 1.4E-23 4.8E-28 242.6 18.8 296 570-914 32-331 (477)
30 3bz5_A Internalin-J, INLJ; leu 99.9 6.1E-23 2.1E-27 233.8 22.9 305 565-939 37-351 (457)
31 4fmz_A Internalin; leucine ric 99.9 1.8E-23 6.1E-28 231.0 17.7 302 596-959 40-341 (347)
32 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-22 4.6E-27 250.4 26.6 274 545-852 46-392 (844)
33 1o6v_A Internalin A; bacterial 99.9 7.2E-23 2.5E-27 235.4 21.5 307 546-922 67-393 (466)
34 3o6n_A APL1; leucine-rich repe 99.9 1.7E-23 5.7E-28 235.1 14.9 301 598-958 43-346 (390)
35 4fcg_A Uncharacterized protein 99.9 7.4E-23 2.5E-27 223.0 17.7 233 598-937 79-311 (328)
36 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-22 4.1E-27 246.0 21.3 251 570-852 25-283 (680)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.3E-23 1.1E-27 244.4 16.0 344 546-941 51-511 (562)
38 3oja_B Anopheles plasmodium-re 99.9 2.9E-23 1E-27 246.2 15.2 301 598-958 49-352 (597)
39 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-23 1.3E-27 243.9 13.4 354 546-940 49-510 (549)
40 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-22 7.6E-27 229.2 19.1 300 596-958 38-346 (457)
41 2id5_A Lingo-1, leucine rich r 99.9 5.5E-22 1.9E-26 229.2 22.4 316 572-941 13-334 (477)
42 2ft3_A Biglycan; proteoglycan, 99.9 9.3E-22 3.2E-26 215.5 15.6 290 571-938 34-331 (332)
43 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-22 7.7E-27 217.9 9.7 250 570-852 50-302 (313)
44 1xku_A Decorin; proteoglycan, 99.9 1.7E-21 5.7E-26 213.3 15.9 271 600-937 52-329 (330)
45 1ogq_A PGIP-2, polygalacturona 99.9 4.2E-22 1.4E-26 215.7 10.4 252 600-920 50-308 (313)
46 2ft3_A Biglycan; proteoglycan, 99.8 2.4E-20 8.1E-25 204.3 20.9 293 548-914 34-331 (332)
47 4g8a_A TOLL-like receptor 4; l 99.8 6.9E-21 2.4E-25 229.0 17.4 148 545-704 50-201 (635)
48 1xku_A Decorin; proteoglycan, 99.8 2.9E-20 9.8E-25 203.5 18.4 294 548-913 32-329 (330)
49 4fcg_A Uncharacterized protein 99.8 7.7E-21 2.6E-25 207.0 12.9 124 569-706 80-212 (328)
50 1jl5_A Outer protein YOPM; leu 99.8 1.1E-19 3.9E-24 206.7 20.8 305 545-941 89-410 (454)
51 1jl5_A Outer protein YOPM; leu 99.8 2E-19 7E-24 204.6 22.1 309 548-950 72-382 (454)
52 2z80_A TOLL-like receptor 2, v 99.8 5.4E-20 1.9E-24 203.3 10.8 258 600-942 52-316 (353)
53 3g06_A SSPH2 (leucine-rich rep 99.8 6.7E-19 2.3E-23 206.2 19.8 261 601-944 41-301 (622)
54 4g8a_A TOLL-like receptor 4; l 99.8 6.4E-19 2.2E-23 211.8 19.2 142 570-728 52-197 (635)
55 2z66_A Variable lymphocyte rec 99.8 5.9E-19 2E-23 190.8 11.5 124 570-706 28-156 (306)
56 3zyi_A Leucine-rich repeat-con 99.8 1.2E-18 4E-23 199.4 14.5 241 571-852 55-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 1.8E-18 6E-23 197.2 15.1 242 571-852 44-290 (440)
58 2z66_A Variable lymphocyte rec 99.8 1.5E-18 5.2E-23 187.6 12.9 99 600-706 28-132 (306)
59 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-19 4.8E-24 196.5 4.6 276 590-943 24-302 (317)
60 1z7x_W Ribonuclease inhibitor; 99.8 3.4E-21 1.2E-25 221.8 -9.0 368 546-941 2-412 (461)
61 1ozn_A Reticulon 4 receptor; N 99.8 1.8E-18 6E-23 184.9 11.4 202 599-852 31-236 (285)
62 3g06_A SSPH2 (leucine-rich rep 99.7 3.3E-17 1.1E-21 191.9 20.3 254 548-881 41-294 (622)
63 2z80_A TOLL-like receptor 2, v 99.7 1.8E-18 6.3E-23 191.0 8.1 251 570-852 52-312 (353)
64 1z7x_W Ribonuclease inhibitor; 99.7 9.4E-21 3.2E-25 218.1 -11.5 363 570-958 3-405 (461)
65 3zyj_A Leucine-rich repeat-con 99.7 5.1E-17 1.8E-21 185.1 19.1 97 601-706 44-142 (440)
66 3zyi_A Leucine-rich repeat-con 99.7 5.7E-17 1.9E-21 185.4 18.8 97 601-706 55-153 (452)
67 1ozn_A Reticulon 4 receptor; N 99.7 8E-18 2.7E-22 179.8 10.8 205 569-832 31-239 (285)
68 3o53_A Protein LRIM1, AGAP0063 99.7 6.1E-19 2.1E-23 191.4 1.5 266 600-944 10-279 (317)
69 3ogk_B Coronatine-insensitive 99.7 7.4E-19 2.5E-23 209.2 2.3 140 792-942 376-528 (592)
70 3ogk_B Coronatine-insensitive 99.7 7.9E-19 2.7E-23 208.9 -0.8 377 547-958 112-520 (592)
71 3oja_A Leucine-rich immune mol 99.7 1.9E-17 6.4E-22 190.3 10.2 214 599-852 33-248 (487)
72 1wwl_A Monocyte differentiatio 99.7 6.2E-18 2.1E-22 183.0 5.4 202 596-852 39-264 (312)
73 2p1m_B Transport inhibitor res 99.7 1.3E-18 4.4E-23 207.2 -3.2 367 547-942 105-521 (594)
74 3oja_A Leucine-rich immune mol 99.7 3.2E-17 1.1E-21 188.4 7.6 80 620-706 21-105 (487)
75 1wwl_A Monocyte differentiatio 99.7 8E-17 2.7E-21 174.3 9.1 222 602-852 65-307 (312)
76 1w5s_A Origin recognition comp 99.7 3.3E-15 1.1E-19 168.8 21.6 318 182-516 21-387 (412)
77 2o6q_A Variable lymphocyte rec 99.7 1.4E-15 4.7E-20 160.8 17.1 63 790-852 153-216 (270)
78 1h6u_A Internalin H; cell adhe 99.7 4.1E-16 1.4E-20 168.1 13.0 190 598-852 39-228 (308)
79 2qen_A Walker-type ATPase; unk 99.6 7.8E-15 2.7E-19 161.8 23.0 297 180-521 9-349 (350)
80 1p9a_G Platelet glycoprotein I 99.6 1.5E-15 5E-20 161.9 16.2 62 790-852 144-206 (290)
81 2z62_A TOLL-like receptor 4, v 99.6 9.1E-16 3.1E-20 162.9 13.7 203 600-852 28-235 (276)
82 3qfl_A MLA10; coiled-coil, (CC 99.6 3.7E-16 1.3E-20 138.2 8.3 80 9-88 2-83 (115)
83 2z62_A TOLL-like receptor 4, v 99.6 8E-16 2.7E-20 163.4 11.4 205 570-831 28-237 (276)
84 2fna_A Conserved hypothetical 99.6 2.5E-14 8.6E-19 158.2 23.7 293 181-520 11-356 (357)
85 4ay9_X Follicle-stimulating ho 99.6 8E-16 2.7E-20 169.2 10.7 99 795-912 155-255 (350)
86 3rfs_A Internalin B, repeat mo 99.6 1.8E-15 6.2E-20 160.0 12.9 81 598-687 39-120 (272)
87 1p9a_G Platelet glycoprotein I 99.6 2.4E-15 8.1E-20 160.3 13.6 199 567-830 7-207 (290)
88 2xwt_C Thyrotropin receptor; s 99.6 4.7E-15 1.6E-19 153.6 15.0 130 792-940 103-239 (239)
89 4ay9_X Follicle-stimulating ho 99.6 3.1E-15 1.1E-19 164.5 14.3 241 603-939 12-258 (350)
90 3rfs_A Internalin B, repeat mo 99.6 1.1E-15 3.7E-20 161.7 9.8 153 566-739 37-192 (272)
91 2ast_B S-phase kinase-associat 99.6 1.2E-16 4E-21 175.4 1.8 222 571-881 48-282 (336)
92 2o6q_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 154.1 16.4 196 600-882 16-216 (270)
93 2ast_B S-phase kinase-associat 99.6 6.2E-16 2.1E-20 169.6 5.3 221 549-851 49-282 (336)
94 2xwt_C Thyrotropin receptor; s 99.6 3.6E-15 1.2E-19 154.5 8.8 79 601-686 32-115 (239)
95 1h6u_A Internalin H; cell adhe 99.6 8.6E-15 2.9E-19 157.7 11.7 193 567-831 38-230 (308)
96 4glp_A Monocyte differentiatio 99.6 2.4E-14 8.2E-19 154.6 14.4 128 568-706 62-203 (310)
97 2p1m_B Transport inhibitor res 99.5 5.2E-17 1.8E-21 193.3 -7.9 359 567-958 102-513 (594)
98 2ca6_A RAN GTPase-activating p 99.5 2.2E-16 7.7E-21 176.6 -3.3 250 562-852 24-314 (386)
99 2ca6_A RAN GTPase-activating p 99.5 1.5E-16 5E-21 178.0 -5.1 225 593-852 25-285 (386)
100 3m19_A Variable lymphocyte rec 99.5 2.5E-13 8.7E-18 141.6 14.5 174 600-852 14-190 (251)
101 3m19_A Variable lymphocyte rec 99.5 2.6E-13 8.7E-18 141.6 14.4 176 570-832 14-193 (251)
102 4glp_A Monocyte differentiatio 99.5 1.2E-13 4E-18 149.2 10.5 105 600-706 64-175 (310)
103 3goz_A Leucine-rich repeat-con 99.5 2.2E-15 7.7E-20 166.6 -3.1 249 592-881 14-294 (362)
104 2qby_B CDC6 homolog 3, cell di 99.4 7.8E-12 2.7E-16 139.5 24.7 299 182-501 19-341 (384)
105 2v1u_A Cell division control p 99.4 1.2E-11 4.1E-16 138.2 25.6 299 182-500 18-352 (387)
106 3goz_A Leucine-rich repeat-con 99.4 3E-14 1E-18 157.5 3.7 240 567-852 19-295 (362)
107 1m9s_A Internalin B; cell inva 99.4 1.3E-13 4.5E-18 161.3 8.8 79 598-686 41-119 (605)
108 1fnn_A CDC6P, cell division co 99.4 6.5E-12 2.2E-16 140.5 21.7 324 182-524 16-384 (389)
109 4b8c_D Glucose-repressible alc 99.4 1.2E-13 3.9E-18 166.2 7.8 167 547-727 173-339 (727)
110 3cvr_A Invasion plasmid antige 99.4 5.6E-13 1.9E-17 154.1 12.5 88 600-706 59-146 (571)
111 1h6t_A Internalin B; cell adhe 99.4 4.1E-13 1.4E-17 143.1 10.4 169 597-852 43-211 (291)
112 1h6t_A Internalin B; cell adhe 99.4 6.4E-13 2.2E-17 141.6 11.8 121 566-706 42-162 (291)
113 1m9s_A Internalin B; cell inva 99.4 5.3E-13 1.8E-17 156.2 11.9 103 567-687 40-142 (605)
114 4ezg_A Putative uncharacterize 99.4 6.2E-13 2.1E-17 132.9 8.3 78 626-706 41-118 (197)
115 1xeu_A Internalin C; cellular 99.4 5.7E-13 2E-17 139.6 7.2 167 598-852 17-183 (263)
116 2o6s_A Variable lymphocyte rec 99.4 1.6E-12 5.6E-17 131.2 10.2 100 599-706 27-130 (208)
117 4ezg_A Putative uncharacterize 99.3 1.7E-12 5.7E-17 129.8 9.4 124 567-706 41-165 (197)
118 2qby_A CDC6 homolog 1, cell di 99.3 3.6E-11 1.2E-15 134.3 21.2 298 181-500 18-349 (386)
119 1dce_A Protein (RAB geranylger 99.3 1.6E-14 5.6E-19 168.0 -8.6 120 795-933 442-566 (567)
120 3cvr_A Invasion plasmid antige 99.3 2.3E-12 7.9E-17 148.9 9.3 188 571-835 60-247 (571)
121 1njg_A DNA polymerase III subu 99.3 3.7E-11 1.3E-15 124.8 16.5 199 183-398 23-231 (250)
122 1dce_A Protein (RAB geranylger 99.3 8.3E-14 2.8E-18 162.0 -5.1 82 791-877 483-566 (567)
123 2v9t_B SLIT homolog 2 protein 99.3 8.5E-12 2.9E-16 126.8 10.1 125 570-706 32-158 (220)
124 2ell_A Acidic leucine-rich nuc 99.3 9.3E-12 3.2E-16 120.8 9.4 129 599-739 23-158 (168)
125 3e6j_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 126.1 11.1 123 570-706 40-165 (229)
126 2o6s_A Variable lymphocyte rec 99.2 1.6E-11 5.4E-16 123.9 10.3 152 569-745 27-182 (208)
127 2v9t_B SLIT homolog 2 protein 99.2 2.8E-11 9.7E-16 122.9 11.6 100 600-706 32-134 (220)
128 2je0_A Acidic leucine-rich nuc 99.2 9.7E-12 3.3E-16 117.9 6.6 123 570-706 17-146 (149)
129 2chg_A Replication factor C sm 99.2 2.1E-10 7.2E-15 117.1 17.0 188 182-396 16-205 (226)
130 1xeu_A Internalin C; cellular 99.2 4E-11 1.4E-15 125.5 11.8 98 596-706 37-134 (263)
131 2v70_A SLIT-2, SLIT homolog 2 99.2 4E-11 1.4E-15 121.8 11.0 143 573-734 14-159 (220)
132 2v70_A SLIT-2, SLIT homolog 2 99.2 3.9E-11 1.3E-15 121.9 10.5 148 551-715 15-164 (220)
133 2xot_A Amphoterin-induced prot 99.2 1.3E-11 4.4E-16 136.1 7.2 80 601-687 40-123 (361)
134 3e6j_A Variable lymphocyte rec 99.2 3.7E-11 1.3E-15 122.9 10.1 130 599-740 39-171 (229)
135 2ell_A Acidic leucine-rich nuc 99.2 3.2E-11 1.1E-15 117.0 8.1 125 569-707 23-154 (168)
136 1a9n_A U2A', U2A'; complex (nu 99.2 3.9E-11 1.3E-15 117.3 8.2 126 565-706 14-146 (176)
137 2xot_A Amphoterin-induced prot 99.2 3.3E-11 1.1E-15 132.8 8.2 169 551-738 22-199 (361)
138 2je0_A Acidic leucine-rich nuc 99.2 2.2E-11 7.5E-16 115.5 5.7 126 598-735 15-147 (149)
139 4b8c_D Glucose-repressible alc 99.1 7E-12 2.4E-16 150.7 1.4 121 563-697 217-337 (727)
140 1w8a_A SLIT protein; signaling 99.1 9.4E-11 3.2E-15 116.3 9.3 100 601-706 30-132 (192)
141 1a9n_A U2A', U2A'; complex (nu 99.1 5.3E-11 1.8E-15 116.3 7.1 130 596-739 15-151 (176)
142 2wfh_A SLIT homolog 2 protein 99.1 1.5E-10 5E-15 114.8 10.1 99 600-706 31-132 (193)
143 1ds9_A Outer arm dynein; leuci 99.1 2.4E-12 8.2E-17 128.7 -5.7 104 593-706 41-146 (198)
144 1w8a_A SLIT protein; signaling 99.0 3.1E-10 1.1E-14 112.5 9.0 105 571-687 30-137 (192)
145 1sxj_B Activator 1 37 kDa subu 99.0 1.2E-09 4E-14 118.6 13.6 187 183-396 21-211 (323)
146 1hqc_A RUVB; extended AAA-ATPa 99.0 9E-10 3.1E-14 119.5 12.4 278 182-498 11-324 (324)
147 2wfh_A SLIT homolog 2 protein 99.0 1.6E-09 5.6E-14 107.2 10.0 104 570-687 31-137 (193)
148 3sb4_A Hypothetical leucine ri 99.0 1.1E-09 3.6E-14 119.1 9.4 289 569-933 24-327 (329)
149 2o6r_A Variable lymphocyte rec 98.9 2.1E-09 7.3E-14 105.0 9.3 99 600-706 28-130 (177)
150 1ds9_A Outer arm dynein; leuci 98.9 2.7E-11 9.2E-16 121.0 -4.7 115 563-693 41-157 (198)
151 3te6_A Regulatory protein SIR3 98.9 3.3E-08 1.1E-12 104.2 17.3 175 184-362 21-212 (318)
152 2o6r_A Variable lymphocyte rec 98.9 6.1E-09 2.1E-13 101.7 10.6 125 602-740 9-136 (177)
153 1iqp_A RFCS; clamp loader, ext 98.8 1.3E-08 4.6E-13 110.4 13.1 186 183-398 25-215 (327)
154 2r9u_A Variable lymphocyte rec 98.8 1.2E-08 4E-13 99.1 9.6 81 600-687 33-116 (174)
155 2r9u_A Variable lymphocyte rec 98.8 7.9E-09 2.7E-13 100.3 8.2 101 603-717 15-118 (174)
156 3g39_A Variable lymphocyte rec 98.8 1.4E-08 4.9E-13 98.1 9.7 94 603-706 12-108 (170)
157 3g39_A Variable lymphocyte rec 98.7 1.9E-08 6.4E-13 97.3 7.7 101 572-688 11-114 (170)
158 3sb4_A Hypothetical leucine ri 98.7 8.8E-09 3E-13 111.8 5.5 126 816-958 200-328 (329)
159 1jr3_A DNA polymerase III subu 98.7 1.4E-07 4.9E-12 104.3 15.0 196 183-395 16-221 (373)
160 2chq_A Replication factor C sm 98.6 1.2E-07 4E-12 102.4 12.4 183 183-395 17-204 (319)
161 4fdw_A Leucine rich hypothetic 98.6 2.7E-06 9.2E-11 94.2 20.4 124 795-938 249-381 (401)
162 3pfi_A Holliday junction ATP-d 98.5 1.9E-06 6.4E-11 93.7 17.6 181 182-395 28-227 (338)
163 4fdw_A Leucine rich hypothetic 98.5 1.1E-06 3.8E-11 97.3 15.9 234 569-881 112-355 (401)
164 1sxj_D Activator 1 41 kDa subu 98.5 1E-06 3.5E-11 96.6 15.6 196 182-394 36-234 (353)
165 1jbk_A CLPB protein; beta barr 98.5 3.3E-07 1.1E-11 90.6 10.4 152 183-357 22-194 (195)
166 3bos_A Putative DNA replicatio 98.5 4.7E-07 1.6E-11 93.2 11.9 175 183-396 28-218 (242)
167 2ifg_A High affinity nerve gro 98.5 2.9E-07 9.9E-12 100.6 9.2 85 596-687 27-114 (347)
168 4fs7_A Uncharacterized protein 98.4 1.4E-05 4.6E-10 88.9 19.8 324 564-955 65-392 (394)
169 3pvs_A Replication-associated 98.3 7.4E-06 2.5E-10 91.5 17.0 180 182-394 25-214 (447)
170 2ifg_A High affinity nerve gro 98.3 7.9E-07 2.7E-11 97.1 8.6 95 604-706 12-109 (347)
171 1sxj_E Activator 1 40 kDa subu 98.3 1.6E-06 5.4E-11 95.0 10.1 198 183-396 14-238 (354)
172 3uk6_A RUVB-like 2; hexameric 98.3 1.6E-05 5.6E-10 87.4 17.3 199 182-394 43-302 (368)
173 3u61_B DNA polymerase accessor 98.2 7.1E-06 2.4E-10 88.5 13.5 182 182-394 25-215 (324)
174 2z4s_A Chromosomal replication 98.2 4.5E-06 1.5E-10 93.5 12.0 162 210-394 130-305 (440)
175 3h4m_A Proteasome-activating n 98.2 1.1E-05 3.9E-10 85.1 14.7 186 182-393 16-229 (285)
176 1a5t_A Delta prime, HOLB; zinc 98.2 1.3E-05 4.3E-10 86.6 14.7 172 189-394 8-204 (334)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.9E-05 9.8E-10 80.8 16.8 189 183-394 6-221 (262)
178 3un9_A NLR family member X1; l 98.1 2.1E-07 7.2E-12 102.1 -0.8 112 570-687 101-222 (372)
179 4fs7_A Uncharacterized protein 98.1 1.9E-05 6.6E-10 87.6 14.7 316 547-932 71-393 (394)
180 1sxj_A Activator 1 95 kDa subu 98.1 1.6E-05 5.4E-10 91.3 14.0 197 182-394 38-252 (516)
181 2p65_A Hypothetical protein PF 98.1 4.3E-06 1.5E-10 81.9 7.9 45 183-233 22-66 (187)
182 1l8q_A Chromosomal replication 98.1 4.1E-05 1.4E-09 82.4 16.1 156 210-391 37-204 (324)
183 3syl_A Protein CBBX; photosynt 98.1 2.8E-05 9.5E-10 83.2 14.6 163 184-362 32-218 (309)
184 3un9_A NLR family member X1; l 98.1 8E-07 2.7E-11 97.5 2.1 130 569-706 71-217 (372)
185 1sxj_C Activator 1 40 kDa subu 98.1 2.1E-05 7.1E-10 85.3 13.2 177 183-392 25-209 (340)
186 1d2n_A N-ethylmaleimide-sensit 98.1 3.7E-05 1.3E-09 80.4 14.5 174 183-387 33-229 (272)
187 3n70_A Transport activator; si 98.0 6.8E-06 2.3E-10 76.6 6.5 115 184-329 2-116 (145)
188 2ra8_A Uncharacterized protein 97.9 2.8E-06 9.5E-11 92.3 3.0 15 596-610 135-149 (362)
189 2ra8_A Uncharacterized protein 97.9 5E-06 1.7E-10 90.2 4.3 115 566-688 135-264 (362)
190 3eie_A Vacuolar protein sortin 97.9 0.00015 5.1E-09 77.7 15.7 189 182-395 17-228 (322)
191 1io0_A Tropomodulin; LRR prote 97.9 9.3E-06 3.2E-10 79.3 5.6 120 565-687 31-162 (185)
192 3ec2_A DNA replication protein 97.9 1.9E-05 6.5E-10 76.8 7.7 121 189-329 20-143 (180)
193 2gno_A DNA polymerase III, gam 97.9 9.1E-05 3.1E-09 78.2 13.2 148 187-361 1-152 (305)
194 3d8b_A Fidgetin-like protein 1 97.9 0.00013 4.4E-09 79.4 14.7 189 183-396 84-296 (357)
195 2qp9_X Vacuolar protein sortin 97.9 0.00011 3.8E-09 79.7 13.8 189 183-395 51-261 (355)
196 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00031 1E-08 75.1 16.8 192 182-396 11-224 (322)
197 2w58_A DNAI, primosome compone 97.8 4E-05 1.4E-09 76.1 8.7 119 191-329 37-159 (202)
198 1io0_A Tropomodulin; LRR prote 97.8 7.4E-06 2.5E-10 80.0 3.0 99 590-688 26-135 (185)
199 1in4_A RUVB, holliday junction 97.8 0.001 3.6E-08 71.5 20.0 180 183-395 25-223 (334)
200 3rw6_A Nuclear RNA export fact 97.8 3.2E-05 1.1E-09 79.3 7.4 83 596-682 166-257 (267)
201 3e4g_A ATP synthase subunit S, 97.8 6E-06 2E-10 78.4 1.6 92 818-917 61-153 (176)
202 3b9p_A CG5977-PA, isoform A; A 97.8 0.00064 2.2E-08 71.9 17.4 187 183-394 21-232 (297)
203 4gt6_A Cell surface protein; l 97.7 0.00064 2.2E-08 75.2 17.9 325 565-960 58-387 (394)
204 1qvr_A CLPB protein; coiled co 97.7 0.00014 4.9E-09 88.8 13.2 155 183-360 170-344 (854)
205 3vfd_A Spastin; ATPase, microt 97.7 0.00035 1.2E-08 77.0 15.3 189 182-394 114-325 (389)
206 3pxg_A Negative regulator of g 97.7 7.2E-05 2.5E-09 84.5 9.5 147 183-361 180-338 (468)
207 3co5_A Putative two-component 97.7 1.6E-05 5.6E-10 73.8 3.4 111 183-328 4-115 (143)
208 3rw6_A Nuclear RNA export fact 97.7 1.2E-05 4E-10 82.6 2.3 80 626-707 167-258 (267)
209 4fcw_A Chaperone protein CLPB; 97.7 0.00017 5.7E-09 77.1 11.2 136 184-328 18-169 (311)
210 2zan_A Vacuolar protein sortin 97.7 0.00061 2.1E-08 76.3 16.0 191 182-395 133-345 (444)
211 3cf0_A Transitional endoplasmi 97.6 0.00059 2E-08 72.2 15.1 182 183-389 15-222 (301)
212 2bjv_A PSP operon transcriptio 97.6 0.00013 4.5E-09 75.8 8.7 133 183-328 6-150 (265)
213 2kjq_A DNAA-related protein; s 97.5 6.4E-05 2.2E-09 70.1 5.1 86 211-328 37-124 (149)
214 1ofh_A ATP-dependent HSL prote 97.5 0.00045 1.6E-08 73.6 12.6 157 183-359 15-213 (310)
215 3e4g_A ATP synthase subunit S, 97.5 1.4E-05 4.8E-10 75.8 0.4 89 794-887 61-155 (176)
216 1ojl_A Transcriptional regulat 97.5 0.00015 5E-09 76.8 7.7 163 183-359 2-188 (304)
217 3hu3_A Transitional endoplasmi 97.4 0.00055 1.9E-08 77.2 11.8 186 183-393 204-413 (489)
218 2c9o_A RUVB-like 1; hexameric 97.4 0.00057 2E-08 77.0 11.6 97 291-394 297-409 (456)
219 4gt6_A Cell surface protein; l 97.4 0.0024 8.3E-08 70.5 16.4 142 549-704 66-209 (394)
220 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0011 3.8E-08 80.1 14.2 159 183-361 186-362 (758)
221 1lv7_A FTSH; alpha/beta domain 97.3 0.003 1E-07 65.1 15.2 187 182-393 11-223 (257)
222 4b4t_L 26S protease subunit RP 97.3 0.005 1.7E-07 67.6 16.9 181 182-388 180-387 (437)
223 4b4t_J 26S protease regulatory 97.3 0.0056 1.9E-07 66.0 16.9 180 183-388 148-354 (405)
224 3pxi_A Negative regulator of g 97.2 0.00044 1.5E-08 83.5 8.8 158 183-361 491-675 (758)
225 3pxi_A Negative regulator of g 97.2 0.00054 1.8E-08 82.7 9.5 149 183-361 180-338 (758)
226 2ce7_A Cell division protein F 97.2 0.0042 1.4E-07 69.3 15.0 181 183-388 16-221 (476)
227 2cvh_A DNA repair and recombin 97.1 0.0022 7.5E-08 64.3 10.7 86 210-301 20-117 (220)
228 4b4t_K 26S protease regulatory 97.1 0.0072 2.5E-07 66.2 15.4 181 181-387 170-378 (428)
229 2r44_A Uncharacterized protein 97.1 0.0022 7.4E-08 69.0 11.1 154 183-362 27-199 (331)
230 2qgz_A Helicase loader, putati 97.0 0.00049 1.7E-08 72.9 5.3 56 190-249 135-190 (308)
231 4h09_A Hypothetical leucine ri 97.0 0.0082 2.8E-07 65.8 15.5 127 790-936 213-342 (379)
232 4b4t_H 26S protease regulatory 97.0 0.011 3.9E-07 64.6 16.0 179 183-387 209-414 (467)
233 3m6a_A ATP-dependent protease 97.0 0.0017 5.8E-08 74.6 10.2 165 183-361 81-266 (543)
234 2r62_A Cell division protease 96.9 0.00028 9.7E-09 73.4 2.3 160 182-361 10-196 (268)
235 1qvr_A CLPB protein; coiled co 96.9 0.0016 5.4E-08 79.6 9.2 135 184-328 559-710 (854)
236 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0019 6.6E-08 78.0 9.4 133 183-328 458-607 (758)
237 4b4t_M 26S protease regulatory 96.8 0.0052 1.8E-07 67.4 11.3 179 183-387 181-386 (434)
238 3t15_A Ribulose bisphosphate c 96.8 0.0082 2.8E-07 63.0 12.4 25 209-233 35-59 (293)
239 4b4t_I 26S protease regulatory 96.8 0.017 5.8E-07 62.5 14.9 179 183-387 182-387 (437)
240 4h09_A Hypothetical leucine ri 96.7 0.019 6.3E-07 63.0 15.5 14 595-608 64-77 (379)
241 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00069 2.4E-08 70.4 3.5 69 210-300 123-193 (331)
242 1jr3_D DNA polymerase III, del 96.6 0.034 1.1E-06 59.9 16.0 158 210-394 18-184 (343)
243 2b8t_A Thymidine kinase; deoxy 96.6 0.0022 7.5E-08 63.7 5.8 114 209-330 11-127 (223)
244 1n0w_A DNA repair protein RAD5 96.4 0.0058 2E-07 62.2 7.9 90 210-300 24-130 (243)
245 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0085 2.9E-07 60.5 8.6 114 211-329 24-168 (235)
246 1g5t_A COB(I)alamin adenosyltr 96.3 0.016 5.5E-07 55.6 9.8 118 211-330 29-164 (196)
247 1um8_A ATP-dependent CLP prote 96.2 0.017 5.9E-07 63.1 11.1 23 211-233 73-95 (376)
248 3hr8_A Protein RECA; alpha and 96.2 0.011 3.7E-07 63.2 8.9 85 209-300 60-150 (356)
249 3io5_A Recombination and repai 96.1 0.02 6.8E-07 59.2 9.9 85 212-301 30-123 (333)
250 3cf2_A TER ATPase, transitiona 96.1 0.045 1.5E-06 64.8 14.0 181 183-388 204-407 (806)
251 1xp8_A RECA protein, recombina 96.1 0.02 6.7E-07 61.7 10.1 84 210-300 74-163 (366)
252 2x8a_A Nuclear valosin-contain 96.0 0.049 1.7E-06 56.3 12.8 128 213-361 47-191 (274)
253 1v5w_A DMC1, meiotic recombina 96.0 0.021 7.3E-07 61.2 9.9 58 209-267 121-182 (343)
254 2zr9_A Protein RECA, recombina 96.0 0.021 7.1E-07 61.2 9.8 84 210-300 61-150 (349)
255 2dhr_A FTSH; AAA+ protein, hex 95.9 0.049 1.7E-06 61.1 12.9 178 182-388 30-236 (499)
256 1ye8_A Protein THEP1, hypothet 95.8 0.023 7.9E-07 54.4 8.6 23 212-234 2-24 (178)
257 1u94_A RECA protein, recombina 95.8 0.014 4.7E-07 62.7 7.6 84 210-300 63-152 (356)
258 1ypw_A Transitional endoplasmi 95.8 0.02 7E-07 68.9 9.6 158 183-361 204-385 (806)
259 2z43_A DNA repair and recombin 95.7 0.019 6.6E-07 61.1 8.3 57 210-267 107-167 (324)
260 2i1q_A DNA repair and recombin 95.7 0.016 5.5E-07 61.8 7.6 58 209-267 97-168 (322)
261 1ixz_A ATP-dependent metallopr 95.6 0.06 2.1E-06 55.0 11.4 150 213-388 52-221 (254)
262 2px0_A Flagellar biosynthesis 95.5 0.027 9.4E-07 58.8 8.3 86 210-298 105-191 (296)
263 1rz3_A Hypothetical protein rb 95.2 0.017 5.8E-07 56.7 5.0 43 188-233 3-45 (201)
264 1iy2_A ATP-dependent metallopr 95.1 0.038 1.3E-06 57.4 7.8 181 182-388 39-245 (278)
265 2cbz_A Multidrug resistance-as 95.0 0.064 2.2E-06 54.0 9.0 23 211-233 32-54 (237)
266 1cr0_A DNA primase/helicase; R 95.0 0.07 2.4E-06 55.9 9.7 38 211-249 36-73 (296)
267 3dm5_A SRP54, signal recogniti 95.0 0.34 1.2E-05 53.1 15.1 26 209-234 99-124 (443)
268 2pze_A Cystic fibrosis transme 94.9 0.12 4.1E-06 51.7 10.4 23 211-233 35-57 (229)
269 3ice_A Transcription terminati 94.9 0.04 1.4E-06 58.5 7.0 53 194-252 163-216 (422)
270 1sky_E F1-ATPase, F1-ATP synth 94.8 0.069 2.4E-06 58.7 8.9 51 211-262 152-203 (473)
271 2orw_A Thymidine kinase; TMTK, 94.8 0.0071 2.4E-07 58.4 1.0 108 211-329 4-113 (184)
272 1odf_A YGR205W, hypothetical 3 94.8 0.15 5.2E-06 52.9 11.1 81 208-288 29-117 (290)
273 1vma_A Cell division protein F 94.7 0.1 3.5E-06 54.6 9.5 90 209-300 103-197 (306)
274 3tqc_A Pantothenate kinase; bi 94.6 0.054 1.8E-06 56.9 7.4 100 186-289 70-171 (321)
275 3bh0_A DNAB-like replicative h 94.6 0.21 7.2E-06 52.7 12.0 52 210-265 68-119 (315)
276 1pgv_A TMD-1, tropomodulin TMD 94.5 0.031 1.1E-06 53.9 4.8 37 627-663 68-109 (197)
277 2r6a_A DNAB helicase, replicat 94.5 0.83 2.8E-05 50.9 17.3 50 210-262 203-252 (454)
278 2ck3_D ATP synthase subunit be 94.4 0.19 6.5E-06 55.0 11.2 65 194-264 142-207 (482)
279 1pgv_A TMD-1, tropomodulin TMD 94.4 0.039 1.3E-06 53.2 5.1 119 566-687 37-168 (197)
280 4a1f_A DNAB helicase, replicat 94.4 0.1 3.5E-06 55.2 8.8 52 210-265 46-97 (338)
281 4a74_A DNA repair and recombin 94.3 0.09 3.1E-06 52.6 8.1 57 209-266 24-84 (231)
282 1nlf_A Regulatory protein REPA 94.2 0.078 2.7E-06 55.0 7.6 118 211-330 31-182 (279)
283 3lda_A DNA repair protein RAD5 94.2 0.094 3.2E-06 57.1 8.4 57 210-267 178-238 (400)
284 2pjz_A Hypothetical protein ST 94.2 0.16 5.4E-06 51.9 9.6 120 211-334 31-190 (263)
285 1pzn_A RAD51, DNA repair and r 94.2 0.1 3.4E-06 56.0 8.4 91 209-300 130-242 (349)
286 3c8u_A Fructokinase; YP_612366 94.1 0.031 1E-06 55.2 3.9 39 192-234 8-46 (208)
287 1zp6_A Hypothetical protein AT 94.1 0.027 9.1E-07 54.7 3.4 24 210-233 9-32 (191)
288 1qhx_A CPT, protein (chloramph 94.0 0.024 8.3E-07 54.3 2.9 23 211-233 4-26 (178)
289 3nbx_X ATPase RAVA; AAA+ ATPas 94.0 0.028 9.5E-07 63.2 3.7 42 184-233 23-64 (500)
290 3lw7_A Adenylate kinase relate 94.0 0.024 8.4E-07 54.0 2.8 20 211-230 2-21 (179)
291 3rfe_A Platelet glycoprotein I 93.9 0.068 2.3E-06 47.9 5.5 52 604-663 12-66 (130)
292 1ly1_A Polynucleotide kinase; 93.8 0.029 9.8E-07 53.8 3.1 22 211-232 3-24 (181)
293 3kb2_A SPBC2 prophage-derived 93.8 0.027 9.3E-07 53.5 2.9 23 211-233 2-24 (173)
294 3tui_C Methionine import ATP-b 93.8 0.14 4.9E-06 54.5 8.5 126 211-336 55-231 (366)
295 3vaa_A Shikimate kinase, SK; s 93.8 0.026 8.9E-07 55.3 2.6 24 210-233 25-48 (199)
296 2ga8_A Hypothetical 39.9 kDa p 93.7 0.047 1.6E-06 57.7 4.7 45 187-233 3-47 (359)
297 3kl4_A SRP54, signal recogniti 93.7 0.26 8.8E-06 54.0 10.6 90 209-300 96-190 (433)
298 2yvu_A Probable adenylyl-sulfa 93.7 0.071 2.4E-06 51.4 5.6 26 209-234 12-37 (186)
299 3uie_A Adenylyl-sulfate kinase 93.6 0.037 1.3E-06 54.2 3.4 26 209-234 24-49 (200)
300 3e70_C DPA, signal recognition 93.5 0.31 1.1E-05 51.4 10.7 57 208-266 127-184 (328)
301 2ffh_A Protein (FFH); SRP54, s 93.5 0.23 7.7E-06 54.4 9.8 37 210-248 98-134 (425)
302 3trf_A Shikimate kinase, SK; a 93.4 0.032 1.1E-06 53.9 2.5 24 210-233 5-28 (185)
303 1kgd_A CASK, peripheral plasma 93.4 0.032 1.1E-06 53.6 2.5 23 211-233 6-28 (180)
304 1j8m_F SRP54, signal recogniti 93.4 0.23 7.8E-06 51.7 9.2 89 210-300 98-191 (297)
305 2rhm_A Putative kinase; P-loop 93.3 0.042 1.4E-06 53.3 3.4 25 209-233 4-28 (193)
306 2j37_W Signal recognition part 93.3 0.5 1.7E-05 52.9 12.4 39 208-248 99-137 (504)
307 1kag_A SKI, shikimate kinase I 93.3 0.03 1E-06 53.3 2.2 23 211-233 5-27 (173)
308 3hws_A ATP-dependent CLP prote 93.3 0.044 1.5E-06 59.5 3.8 50 184-233 16-74 (363)
309 2xxa_A Signal recognition part 93.2 0.25 8.6E-06 54.4 9.7 39 209-249 99-138 (433)
310 1ls1_A Signal recognition part 93.2 0.23 8E-06 51.7 9.0 87 210-298 98-189 (295)
311 1knq_A Gluconate kinase; ALFA/ 93.2 0.047 1.6E-06 52.0 3.4 25 209-233 7-31 (175)
312 1nks_A Adenylate kinase; therm 93.2 0.042 1.4E-06 53.3 3.0 23 211-233 2-24 (194)
313 1gvn_B Zeta; postsegregational 93.1 0.066 2.2E-06 55.7 4.6 25 208-232 31-55 (287)
314 3upu_A ATP-dependent DNA helic 93.1 0.12 4.1E-06 57.9 7.0 24 211-234 46-69 (459)
315 1xjc_A MOBB protein homolog; s 93.0 0.085 2.9E-06 49.5 4.7 26 209-234 3-28 (169)
316 4gp7_A Metallophosphoesterase; 93.0 0.045 1.5E-06 52.0 2.9 23 210-232 9-31 (171)
317 3umf_A Adenylate kinase; rossm 93.0 0.052 1.8E-06 53.5 3.4 26 208-233 27-52 (217)
318 2bdt_A BH3686; alpha-beta prot 93.0 0.051 1.7E-06 52.6 3.3 22 211-232 3-24 (189)
319 4eun_A Thermoresistant glucoki 92.9 0.044 1.5E-06 53.7 2.8 24 210-233 29-52 (200)
320 2p5t_B PEZT; postsegregational 92.9 0.071 2.4E-06 54.4 4.4 41 192-233 15-55 (253)
321 3fwy_A Light-independent proto 92.9 0.11 3.6E-06 54.7 5.8 40 209-250 47-86 (314)
322 1fx0_B ATP synthase beta chain 92.9 0.25 8.7E-06 54.3 8.9 65 194-264 154-219 (498)
323 3tau_A Guanylate kinase, GMP k 92.8 0.046 1.6E-06 53.9 2.8 24 210-233 8-31 (208)
324 3t61_A Gluconokinase; PSI-biol 92.8 0.04 1.4E-06 54.1 2.3 24 210-233 18-41 (202)
325 3iij_A Coilin-interacting nucl 92.8 0.041 1.4E-06 52.8 2.3 24 210-233 11-34 (180)
326 2ze6_A Isopentenyl transferase 92.8 0.051 1.7E-06 55.4 3.1 23 211-233 2-24 (253)
327 2z0h_A DTMP kinase, thymidylat 92.8 0.16 5.5E-06 49.2 6.7 22 212-233 2-23 (197)
328 1kht_A Adenylate kinase; phosp 92.8 0.048 1.7E-06 52.8 2.8 23 211-233 4-26 (192)
329 1uf9_A TT1252 protein; P-loop, 92.8 0.057 2E-06 52.9 3.3 25 208-232 6-30 (203)
330 3tr0_A Guanylate kinase, GMP k 92.7 0.051 1.7E-06 53.4 3.0 22 211-232 8-29 (205)
331 1zuh_A Shikimate kinase; alpha 92.7 0.046 1.6E-06 51.7 2.5 25 209-233 6-30 (168)
332 1y63_A LMAJ004144AAA protein; 92.7 0.05 1.7E-06 52.4 2.8 24 209-232 9-32 (184)
333 3asz_A Uridine kinase; cytidin 92.7 0.059 2E-06 53.2 3.4 25 209-233 5-29 (211)
334 2plr_A DTMP kinase, probable t 92.7 0.13 4.6E-06 50.6 6.1 24 211-234 5-28 (213)
335 1ukz_A Uridylate kinase; trans 92.7 0.062 2.1E-06 52.7 3.5 24 209-232 14-37 (203)
336 1q57_A DNA primase/helicase; d 92.7 0.33 1.1E-05 55.0 10.1 53 210-265 242-294 (503)
337 2qt1_A Nicotinamide riboside k 92.7 0.064 2.2E-06 52.8 3.6 24 209-232 20-43 (207)
338 3l0o_A Transcription terminati 92.6 0.43 1.5E-05 50.6 9.7 53 193-251 163-216 (427)
339 1tev_A UMP-CMP kinase; ploop, 92.6 0.059 2E-06 52.4 3.1 24 210-233 3-26 (196)
340 3a00_A Guanylate kinase, GMP k 92.6 0.043 1.5E-06 53.0 2.1 23 211-233 2-24 (186)
341 2jaq_A Deoxyguanosine kinase; 92.5 0.055 1.9E-06 53.1 2.8 22 212-233 2-23 (205)
342 2pbr_A DTMP kinase, thymidylat 92.5 0.19 6.6E-06 48.5 6.8 22 212-233 2-23 (195)
343 2if2_A Dephospho-COA kinase; a 92.5 0.055 1.9E-06 53.1 2.8 21 212-232 3-23 (204)
344 2c95_A Adenylate kinase 1; tra 92.5 0.055 1.9E-06 52.7 2.7 24 210-233 9-32 (196)
345 2qor_A Guanylate kinase; phosp 92.5 0.046 1.6E-06 53.7 2.2 25 209-233 11-35 (204)
346 1via_A Shikimate kinase; struc 92.5 0.048 1.6E-06 52.0 2.2 22 212-233 6-27 (175)
347 1uj2_A Uridine-cytidine kinase 92.5 0.063 2.1E-06 54.8 3.3 25 209-233 21-45 (252)
348 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.062 2.1E-06 55.1 3.2 24 210-233 4-27 (260)
349 3cm0_A Adenylate kinase; ATP-b 92.4 0.067 2.3E-06 51.5 3.3 24 210-233 4-27 (186)
350 3hjn_A DTMP kinase, thymidylat 92.4 0.26 8.8E-06 47.9 7.5 51 212-264 2-52 (197)
351 2j41_A Guanylate kinase; GMP, 92.4 0.057 2E-06 53.1 2.8 23 211-233 7-29 (207)
352 1jjv_A Dephospho-COA kinase; P 92.4 0.067 2.3E-06 52.6 3.3 22 211-232 3-24 (206)
353 1nn5_A Similar to deoxythymidy 92.3 0.18 6.3E-06 49.7 6.5 24 210-233 9-32 (215)
354 3cmu_A Protein RECA, recombina 92.3 0.19 6.5E-06 65.1 7.9 84 209-299 1426-1515(2050)
355 1htw_A HI0065; nucleotide-bind 92.2 0.085 2.9E-06 49.1 3.5 25 209-233 32-56 (158)
356 2iyv_A Shikimate kinase, SK; t 92.2 0.045 1.6E-06 52.7 1.7 23 211-233 3-25 (184)
357 1g8p_A Magnesium-chelatase 38 92.2 0.045 1.5E-06 59.0 1.9 45 183-233 24-68 (350)
358 1cke_A CK, MSSA, protein (cyti 92.2 0.064 2.2E-06 53.7 2.9 22 211-232 6-27 (227)
359 2hf9_A Probable hydrogenase ni 92.1 0.099 3.4E-06 52.2 4.2 25 209-233 37-61 (226)
360 1lvg_A Guanylate kinase, GMP k 92.0 0.055 1.9E-06 52.8 2.1 23 211-233 5-27 (198)
361 3llm_A ATP-dependent RNA helic 92.0 0.59 2E-05 46.8 9.9 100 192-300 66-187 (235)
362 1qf9_A UMP/CMP kinase, protein 91.9 0.077 2.6E-06 51.4 3.1 25 209-233 5-29 (194)
363 2bbw_A Adenylate kinase 4, AK4 91.9 0.073 2.5E-06 54.0 3.0 23 210-232 27-49 (246)
364 3aez_A Pantothenate kinase; tr 91.9 0.084 2.9E-06 55.5 3.5 25 209-233 89-113 (312)
365 2q6t_A DNAB replication FORK h 91.9 0.49 1.7E-05 52.6 10.0 53 210-265 200-252 (444)
366 2cdn_A Adenylate kinase; phosp 91.9 0.075 2.6E-06 52.0 3.0 25 209-233 19-43 (201)
367 3ney_A 55 kDa erythrocyte memb 91.9 0.072 2.5E-06 51.5 2.7 25 209-233 18-42 (197)
368 1tue_A Replication protein E1; 91.9 0.1 3.4E-06 50.3 3.6 37 192-233 45-81 (212)
369 2bwj_A Adenylate kinase 5; pho 91.9 0.073 2.5E-06 51.9 2.8 23 211-233 13-35 (199)
370 2grj_A Dephospho-COA kinase; T 91.8 0.09 3.1E-06 50.8 3.4 24 209-232 11-34 (192)
371 1ex7_A Guanylate kinase; subst 91.8 0.056 1.9E-06 51.8 1.9 22 211-232 2-23 (186)
372 1znw_A Guanylate kinase, GMP k 91.8 0.08 2.7E-06 52.1 3.0 24 210-233 20-43 (207)
373 2pt5_A Shikimate kinase, SK; a 91.8 0.077 2.6E-06 50.1 2.8 22 212-233 2-23 (168)
374 1e6c_A Shikimate kinase; phosp 91.7 0.066 2.3E-06 50.8 2.3 23 211-233 3-25 (173)
375 3bgw_A DNAB-like replicative h 91.7 0.72 2.5E-05 51.0 11.0 53 209-265 196-248 (444)
376 2jeo_A Uridine-cytidine kinase 91.7 0.095 3.3E-06 53.1 3.5 25 209-233 24-48 (245)
377 3tlx_A Adenylate kinase 2; str 91.6 0.11 3.8E-06 52.5 3.9 25 209-233 28-52 (243)
378 2vli_A Antibiotic resistance p 91.6 0.062 2.1E-06 51.6 1.9 24 210-233 5-28 (183)
379 2yhs_A FTSY, cell division pro 91.6 0.55 1.9E-05 52.0 9.5 42 209-253 292-333 (503)
380 1rj9_A FTSY, signal recognitio 91.5 0.081 2.8E-06 55.4 2.8 26 209-234 101-126 (304)
381 1aky_A Adenylate kinase; ATP:A 91.4 0.082 2.8E-06 52.6 2.7 23 211-233 5-27 (220)
382 2wsm_A Hydrogenase expression/ 91.4 0.1 3.6E-06 51.8 3.4 25 209-233 29-53 (221)
383 1z6g_A Guanylate kinase; struc 91.3 0.075 2.6E-06 52.8 2.3 23 211-233 24-46 (218)
384 3jvv_A Twitching mobility prot 91.3 0.48 1.6E-05 50.6 8.7 110 211-333 124-235 (356)
385 4e22_A Cytidylate kinase; P-lo 91.3 0.094 3.2E-06 53.4 3.0 23 210-232 27-49 (252)
386 2pez_A Bifunctional 3'-phospho 91.3 0.11 3.7E-06 49.7 3.2 25 209-233 4-28 (179)
387 3e1s_A Exodeoxyribonuclease V, 91.2 0.32 1.1E-05 55.9 7.6 104 211-327 205-314 (574)
388 2i3b_A HCR-ntpase, human cance 91.2 0.086 2.9E-06 50.8 2.4 23 212-234 3-25 (189)
389 1ny5_A Transcriptional regulat 91.2 0.87 3E-05 49.5 10.8 132 184-328 138-281 (387)
390 1sq5_A Pantothenate kinase; P- 91.2 0.19 6.4E-06 52.9 5.3 25 209-233 79-103 (308)
391 3rfe_A Platelet glycoprotein I 91.2 0.25 8.7E-06 44.1 5.4 53 632-687 11-66 (130)
392 1s96_A Guanylate kinase, GMP k 91.2 0.094 3.2E-06 51.9 2.8 25 209-233 15-39 (219)
393 3b9q_A Chloroplast SRP recepto 91.1 0.18 6.1E-06 52.7 5.0 26 209-234 99-124 (302)
394 2f1r_A Molybdopterin-guanine d 91.1 0.083 2.8E-06 49.9 2.2 24 211-234 3-26 (171)
395 1zu4_A FTSY; GTPase, signal re 91.1 0.2 6.9E-06 52.7 5.4 39 209-249 104-142 (320)
396 1m7g_A Adenylylsulfate kinase; 91.1 0.12 4E-06 51.0 3.4 26 209-234 24-49 (211)
397 3end_A Light-independent proto 91.1 0.23 7.8E-06 52.3 5.8 43 208-252 39-81 (307)
398 1zd8_A GTP:AMP phosphotransfer 91.0 0.099 3.4E-06 52.3 2.8 23 210-232 7-29 (227)
399 2wwf_A Thymidilate kinase, put 91.0 0.1 3.5E-06 51.4 2.9 25 210-234 10-34 (212)
400 3b5x_A Lipid A export ATP-bind 91.0 0.66 2.2E-05 53.6 10.1 24 210-233 369-392 (582)
401 2f6r_A COA synthase, bifunctio 91.0 0.12 4.2E-06 53.4 3.6 24 209-232 74-97 (281)
402 2pt7_A CAG-ALFA; ATPase, prote 90.8 0.25 8.4E-06 52.4 5.8 106 211-331 172-277 (330)
403 3fb4_A Adenylate kinase; psych 90.8 0.11 3.7E-06 51.5 2.9 22 212-233 2-23 (216)
404 1gtv_A TMK, thymidylate kinase 90.8 0.073 2.5E-06 52.6 1.6 23 212-234 2-24 (214)
405 2qe7_A ATP synthase subunit al 90.8 0.24 8.1E-06 54.6 5.7 96 194-298 151-263 (502)
406 1zak_A Adenylate kinase; ATP:A 90.6 0.093 3.2E-06 52.3 2.2 24 210-233 5-28 (222)
407 3dl0_A Adenylate kinase; phosp 90.6 0.12 4E-06 51.3 2.9 21 212-232 2-22 (216)
408 1tf7_A KAIC; homohexamer, hexa 90.6 0.16 5.6E-06 57.9 4.5 115 210-329 281-417 (525)
409 2v54_A DTMP kinase, thymidylat 90.6 0.12 4E-06 50.6 2.9 23 211-233 5-27 (204)
410 1vht_A Dephospho-COA kinase; s 90.5 0.14 4.7E-06 50.8 3.4 23 210-232 4-26 (218)
411 3mfy_A V-type ATP synthase alp 90.5 0.47 1.6E-05 52.7 7.7 59 194-261 216-275 (588)
412 4eaq_A DTMP kinase, thymidylat 90.5 0.27 9.3E-06 49.0 5.5 26 209-234 25-50 (229)
413 2onk_A Molybdate/tungstate ABC 90.5 0.12 4E-06 52.1 2.7 22 211-232 25-46 (240)
414 3p32_A Probable GTPase RV1496/ 90.5 0.38 1.3E-05 51.7 7.0 38 192-233 65-102 (355)
415 2r8r_A Sensor protein; KDPD, P 90.5 0.34 1.2E-05 47.5 5.9 105 211-329 7-127 (228)
416 2j9r_A Thymidine kinase; TK1, 90.5 0.33 1.1E-05 47.2 5.8 111 209-330 27-139 (214)
417 2ehv_A Hypothetical protein PH 90.4 0.13 4.3E-06 52.3 3.0 39 210-249 30-68 (251)
418 3vr4_D V-type sodium ATPase su 90.4 0.22 7.4E-06 54.3 4.9 98 194-298 140-257 (465)
419 2ged_A SR-beta, signal recogni 90.4 0.16 5.6E-06 49.0 3.7 25 209-233 47-71 (193)
420 2pcj_A ABC transporter, lipopr 90.3 0.12 4.2E-06 51.3 2.8 22 211-232 31-52 (224)
421 3tif_A Uncharacterized ABC tra 90.3 0.13 4.3E-06 51.7 2.9 22 211-232 32-53 (235)
422 2og2_A Putative signal recogni 90.3 0.23 7.7E-06 53.1 4.9 26 209-234 156-181 (359)
423 3sr0_A Adenylate kinase; phosp 90.3 0.13 4.6E-06 50.2 2.9 75 212-300 2-85 (206)
424 3vr4_A V-type sodium ATPase ca 90.2 0.59 2E-05 52.2 8.2 58 194-260 221-279 (600)
425 3nwj_A ATSK2; P loop, shikimat 90.1 0.11 3.8E-06 52.5 2.3 23 211-233 49-71 (250)
426 2dr3_A UPF0273 protein PH0284; 90.1 0.25 8.6E-06 49.9 5.0 39 211-251 24-62 (247)
427 3d3q_A TRNA delta(2)-isopenten 90.1 0.14 4.9E-06 53.8 3.1 23 211-233 8-30 (340)
428 3a8t_A Adenylate isopentenyltr 90.1 0.17 5.8E-06 53.1 3.6 25 209-233 39-63 (339)
429 3lnc_A Guanylate kinase, GMP k 90.1 0.1 3.6E-06 52.3 2.0 22 211-232 28-50 (231)
430 1np6_A Molybdopterin-guanine d 90.0 0.29 1E-05 46.3 5.0 25 209-233 5-29 (174)
431 1yrb_A ATP(GTP)binding protein 90.0 0.17 5.7E-06 51.8 3.6 27 208-234 12-38 (262)
432 3r20_A Cytidylate kinase; stru 89.9 0.14 5E-06 50.9 2.9 23 211-233 10-32 (233)
433 2r9v_A ATP synthase subunit al 89.9 0.37 1.3E-05 53.1 6.2 96 194-298 164-276 (515)
434 3gqb_B V-type ATP synthase bet 89.9 0.23 8E-06 54.0 4.6 99 195-298 137-260 (464)
435 3cmu_A Protein RECA, recombina 89.9 0.52 1.8E-05 61.2 8.5 85 210-301 383-473 (2050)
436 3be4_A Adenylate kinase; malar 89.9 0.12 4.2E-06 51.1 2.3 23 211-233 6-28 (217)
437 3b85_A Phosphate starvation-in 89.8 0.11 3.9E-06 50.8 2.0 23 211-233 23-45 (208)
438 3ake_A Cytidylate kinase; CMP 89.8 0.15 5.1E-06 50.0 2.9 22 212-233 4-25 (208)
439 3gfo_A Cobalt import ATP-bindi 89.8 0.15 5E-06 52.5 2.8 22 211-232 35-56 (275)
440 2eyu_A Twitching motility prot 89.7 0.3 1E-05 49.8 5.1 109 210-332 25-136 (261)
441 2wji_A Ferrous iron transport 89.7 0.2 6.8E-06 47.0 3.6 23 211-233 4-26 (165)
442 1b0u_A Histidine permease; ABC 89.7 0.15 5.1E-06 52.1 2.8 22 211-232 33-54 (262)
443 2xb4_A Adenylate kinase; ATP-b 89.7 0.15 5.2E-06 50.7 2.8 22 212-233 2-23 (223)
444 1e4v_A Adenylate kinase; trans 89.6 0.16 5.3E-06 50.3 2.9 22 212-233 2-23 (214)
445 3ld9_A DTMP kinase, thymidylat 89.6 0.55 1.9E-05 46.3 6.8 26 209-234 20-45 (223)
446 3crm_A TRNA delta(2)-isopenten 89.6 0.16 5.6E-06 53.1 3.1 23 211-233 6-28 (323)
447 2ck3_A ATP synthase subunit al 89.6 0.53 1.8E-05 52.0 7.2 101 194-299 151-272 (510)
448 1oix_A RAS-related protein RAB 89.6 0.16 5.5E-06 49.1 2.8 24 210-233 29-52 (191)
449 1ji0_A ABC transporter; ATP bi 89.5 0.16 5.5E-06 51.1 2.9 22 211-232 33-54 (240)
450 1sgw_A Putative ABC transporte 89.5 0.14 4.7E-06 50.5 2.3 23 211-233 36-58 (214)
451 2zej_A Dardarin, leucine-rich 89.5 0.16 5.3E-06 48.8 2.7 22 212-233 4-25 (184)
452 1g6h_A High-affinity branched- 89.4 0.16 5.6E-06 51.7 2.9 22 211-232 34-55 (257)
453 4edh_A DTMP kinase, thymidylat 89.4 0.61 2.1E-05 45.8 7.0 25 210-234 6-30 (213)
454 2olj_A Amino acid ABC transpor 89.4 0.16 5.6E-06 51.8 2.8 22 211-232 51-72 (263)
455 3cmw_A Protein RECA, recombina 89.4 0.55 1.9E-05 60.1 8.1 85 210-301 383-473 (1706)
456 3exa_A TRNA delta(2)-isopenten 89.4 0.19 6.4E-06 52.1 3.2 24 210-233 3-26 (322)
457 1g41_A Heat shock protein HSLU 89.3 0.17 5.8E-06 55.5 3.1 51 183-233 15-73 (444)
458 2d2e_A SUFC protein; ABC-ATPas 89.3 0.18 6E-06 51.2 3.0 22 211-232 30-51 (250)
459 4g1u_C Hemin import ATP-bindin 89.3 0.16 5.6E-06 51.9 2.8 22 211-232 38-59 (266)
460 2c61_A A-type ATP synthase non 89.3 0.19 6.6E-06 55.0 3.4 100 194-298 141-258 (469)
461 1mv5_A LMRA, multidrug resista 89.3 0.19 6.6E-06 50.7 3.3 23 210-232 28-50 (243)
462 2zu0_C Probable ATP-dependent 89.2 0.18 6.2E-06 51.6 3.0 23 211-233 47-69 (267)
463 1vpl_A ABC transporter, ATP-bi 89.2 0.18 6E-06 51.3 2.8 22 211-232 42-63 (256)
464 2ff7_A Alpha-hemolysin translo 89.1 0.18 6.1E-06 51.0 2.9 23 211-233 36-58 (247)
465 1ak2_A Adenylate kinase isoenz 89.1 0.18 6.1E-06 50.6 2.9 24 210-233 16-39 (233)
466 2dyk_A GTP-binding protein; GT 89.0 0.21 7.3E-06 46.3 3.1 23 211-233 2-24 (161)
467 1cp2_A CP2, nitrogenase iron p 89.0 0.41 1.4E-05 49.1 5.6 39 211-251 2-40 (269)
468 3k1j_A LON protease, ATP-depen 89.0 0.18 6E-06 58.7 3.1 43 183-233 41-83 (604)
469 2qi9_C Vitamin B12 import ATP- 88.9 0.19 6.4E-06 50.9 2.8 23 211-233 27-49 (249)
470 2fz4_A DNA repair protein RAD2 88.9 0.79 2.7E-05 45.9 7.5 103 213-326 111-226 (237)
471 1ltq_A Polynucleotide kinase; 88.9 0.2 6.7E-06 52.6 3.1 22 211-232 3-24 (301)
472 2ixe_A Antigen peptide transpo 88.8 0.19 6.5E-06 51.6 2.9 22 211-232 46-67 (271)
473 3foz_A TRNA delta(2)-isopenten 88.8 0.24 8.1E-06 51.2 3.5 24 209-232 9-32 (316)
474 2ghi_A Transport protein; mult 88.7 0.2 6.7E-06 51.2 2.9 23 211-233 47-69 (260)
475 2f9l_A RAB11B, member RAS onco 88.7 0.19 6.3E-06 49.0 2.6 24 210-233 5-28 (199)
476 2nq2_C Hypothetical ABC transp 88.7 0.2 6.8E-06 50.8 2.9 23 211-233 32-54 (253)
477 2yz2_A Putative ABC transporte 88.6 0.2 6.8E-06 51.3 2.9 22 211-232 34-55 (266)
478 2ihy_A ABC transporter, ATP-bi 88.6 0.2 6.8E-06 51.6 2.8 23 211-233 48-70 (279)
479 3zvl_A Bifunctional polynucleo 88.6 0.2 7E-06 55.1 3.1 25 209-233 257-281 (416)
480 2wjg_A FEOB, ferrous iron tran 88.5 0.27 9.1E-06 47.2 3.6 25 209-233 6-30 (188)
481 3vkw_A Replicase large subunit 88.4 0.64 2.2E-05 50.7 6.7 26 207-232 158-183 (446)
482 3lv8_A DTMP kinase, thymidylat 88.4 0.68 2.3E-05 46.2 6.5 37 210-247 27-63 (236)
483 3cmw_A Protein RECA, recombina 88.3 0.57 2E-05 59.9 7.2 84 209-299 1430-1519(1706)
484 3v9p_A DTMP kinase, thymidylat 88.3 0.57 1.9E-05 46.4 5.8 25 210-234 25-49 (227)
485 2afh_E Nitrogenase iron protei 88.3 0.5 1.7E-05 49.1 5.8 39 211-251 3-41 (289)
486 3dzd_A Transcriptional regulat 88.3 0.78 2.7E-05 49.4 7.4 162 183-359 129-314 (368)
487 1xx6_A Thymidine kinase; NESG, 88.3 0.16 5.4E-06 48.9 1.7 109 210-329 8-118 (191)
488 4akg_A Glutathione S-transfera 88.2 2.3 7.7E-05 57.4 13.0 126 213-361 1270-1431(2695)
489 3b60_A Lipid A export ATP-bind 88.2 0.71 2.4E-05 53.3 7.5 23 211-233 370-392 (582)
490 4dzz_A Plasmid partitioning pr 88.2 0.52 1.8E-05 45.9 5.5 44 211-256 2-46 (206)
491 2vp4_A Deoxynucleoside kinase; 88.1 0.22 7.4E-06 49.9 2.7 24 209-232 19-42 (230)
492 2iw3_A Elongation factor 3A; a 88.1 1.5 5E-05 53.1 10.1 120 211-336 462-612 (986)
493 2ce2_X GTPase HRAS; signaling 88.0 0.23 7.7E-06 46.3 2.6 22 212-233 5-26 (166)
494 2v9p_A Replication protein E1; 88.0 0.24 8.3E-06 51.5 3.0 24 210-233 126-149 (305)
495 2zts_A Putative uncharacterize 88.0 0.58 2E-05 47.2 5.9 49 210-261 30-78 (251)
496 3oaa_A ATP synthase subunit al 87.9 1.5 5E-05 48.3 9.1 94 195-299 152-264 (513)
497 1fx0_A ATP synthase alpha chai 87.9 0.36 1.2E-05 53.2 4.4 83 211-299 164-265 (507)
498 1a7j_A Phosphoribulokinase; tr 87.8 0.13 4.3E-06 53.6 0.8 25 209-233 4-28 (290)
499 3nh6_A ATP-binding cassette SU 87.6 0.25 8.5E-06 51.6 2.8 22 211-232 81-102 (306)
500 2lkc_A Translation initiation 87.6 0.3 1E-05 46.2 3.3 25 209-233 7-31 (178)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.9e-48 Score=453.27 Aligned_cols=317 Identities=20% Similarity=0.275 Sum_probs=256.0
Q ss_pred ecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhc--chhhHhcCCeEEEEEeCCcc--cHHHHHHHH
Q 002132 186 CGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN--HVEVKRKFDKLLWVCVSDPF--EQFRVAKAI 261 (961)
Q Consensus 186 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i 261 (961)
|||++++++|.++|.... ++..++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ ++..++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997543 23679999999999999999999998 56789999999999999985 899999999
Q ss_pred HHHcCCCCC-------CCCCHHHHHHHHHHHhCCc-eEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhh
Q 002132 262 AEALGIPSS-------NLGEFQSLLKLISESITGK-RFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVAS 333 (961)
Q Consensus 262 ~~~l~~~~~-------~~~~~~~l~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~ 333 (961)
+++++.... +..+.+.+...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 2234577889999999996 9999999999863222321 17999999999999998
Q ss_pred hhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCCCHHHHHHHhcC
Q 002132 334 MMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQIEEEWERISNS 413 (961)
Q Consensus 334 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~~~~~ 413 (961)
.++.. ..+|++++|++++||+||.+.+|+.. .++.+.+++++|+++|+|+||||+++|+.++.+. . +|...+.+
T Consensus 280 ~~~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w-~~~~~l~~ 353 (549)
T 2a5y_B 280 AASQT-CEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-F-EKMAQLNN 353 (549)
T ss_dssp GCCSC-EEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-H-HHHHHHHH
T ss_pred HcCCC-CeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-H-HHHHHhHH
Confidence 77532 25799999999999999999987543 2467888999999999999999999999997762 2 22222222
Q ss_pred cccchhhhhhhHHHHHHHhhcCCChhhHHHHh-----------hhccCCCCCccChHHHHHHHHHc--CCcccCC-CCcH
Q 002132 414 DLWRVEEMEKGVLSSLLLSYNDLPSKVKICFS-----------YCAVFPKNYNIKKDELLTLWMAQ--GYLSAKQ-NKEM 479 (961)
Q Consensus 414 ~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-----------~~~~fp~~~~i~~~~Li~~w~a~--g~i~~~~-~~~~ 479 (961)
..+.. ....+.+++.+||++||.++|.||+ |||+||+++.|+ +.+|+|+ ||+...+ +...
T Consensus 354 ~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 354 KLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred Hhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 22211 2345888999999999999999999 999999999998 8999999 9998775 6778
Q ss_pred HHHHHHHHHHHHhCCCcccccccCCCceeeEeechhHHHHHHhhccccce
Q 002132 480 ETIGEEYFSILASRSFFQEFEKSYDNRIIECKMHDIVHDFARFVSQNECF 529 (961)
Q Consensus 480 ~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~~ 529 (961)
+++++ ||++|+++||+++...+ ...+|+|||+||+||++++.++++
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 88888 99999999999986543 456799999999999999988765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.2e-38 Score=372.26 Aligned_cols=286 Identities=20% Similarity=0.219 Sum_probs=228.1
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCe-EEEEEeCCcccHHHHHHHHH
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDK-LLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~ 262 (961)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999997532 4689999999999999999999998778899986 99999999999888888887
Q ss_pred HHcCCCC------CCC-----CCHHHHHHHHHHHh---CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccc
Q 002132 263 EALGIPS------SNL-----GEFQSLLKLISESI---TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRK 328 (961)
Q Consensus 263 ~~l~~~~------~~~-----~~~~~l~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 328 (961)
+.++... .+. .+.+.+...+++.+ .+||+||||||||+. ..|+.+ + .||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 7542210 010 12345566677655 789999999999983 345443 2 68999999999
Q ss_pred hhhhhhhccCCcceEEcC------CCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCC
Q 002132 329 KSVASMMGSTDTDIITVM------ELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQ 402 (961)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~ 402 (961)
+.++..+... ..|.++ +|+.+|||+||.+.. +.. . .++..+| |+|+||||+++|+.|+.+.
T Consensus 275 ~~Va~~l~g~--~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~ 341 (1221)
T 1vt4_I 275 KQVTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGL 341 (1221)
T ss_dssp SHHHHHHHHH--SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSC
T ss_pred hHHHHhcCCC--eEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCC
Confidence 9988755433 356666 999999999999984 322 1 1223333 9999999999999999884
Q ss_pred -CHHHHHHHhcCcccchhhhhhhHHHHHHHhhcCCChhh-HHHHhhhccCCCCCccChHHHHHHHHHcCCcccCCCCcHH
Q 002132 403 -IEEEWERISNSDLWRVEEMEKGVLSSLLLSYNDLPSKV-KICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAKQNKEME 480 (961)
Q Consensus 403 -~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~ 480 (961)
..++|... ....+..+|.+||+.||+++ |.||+|||+||+++.|+++.++.+|+++| +
T Consensus 342 ~s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------e 401 (1221)
T 1vt4_I 342 ATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------K 401 (1221)
T ss_dssp SSHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------S
T ss_pred CCHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------H
Confidence 67889763 13469999999999999999 99999999999999999999999998887 1
Q ss_pred HHHHHHHHHHHhCCCcccccccCCCceeeEeechhHHHHHH
Q 002132 481 TIGEEYFSILASRSFFQEFEKSYDNRIIECKMHDIVHDFAR 521 (961)
Q Consensus 481 ~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mHdlv~~~a~ 521 (961)
+.++.+|++|+++|||+.. +...+|+|||++++++.
T Consensus 402 edAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 3588999999999999973 22347999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-37 Score=402.82 Aligned_cols=313 Identities=20% Similarity=0.263 Sum_probs=247.2
Q ss_pred CCCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhh-HhcC-CeEEEEEeCCccc--HH
Q 002132 180 IDEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV-KRKF-DKLLWVCVSDPFE--QF 255 (961)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~--~~ 255 (961)
...+.||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||+++...+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997543 36799999999999999999999998644 3444 6788999998543 44
Q ss_pred HHHHHHHHHcCCCCC----CCCCHHHHHHHHHHHhCCc--eEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccch
Q 002132 256 RVAKAIAEALGIPSS----NLGEFQSLLKLISESITGK--RFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKK 329 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~----~~~~~~~l~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 329 (961)
..+..++..+..... ...+.+.+.+.++..+.++ ||||||||||+. ..|.. ..+|++||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCH
Confidence 557778888765432 2356788899999999877 999999999975 23333 25789999999999
Q ss_pred hhhhhhccCCcceEEcCC-CCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCCCHHHHH
Q 002132 330 SVASMMGSTDTDIITVME-LTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQIEEEWE 408 (961)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~ 408 (961)
.++..+... ...+.+.+ |++++|++||...++... +.+++++++|+++|+|+||||+++|++|+.+. ..|.
T Consensus 268 ~~~~~~~~~-~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~ 339 (1249)
T 3sfz_A 268 SVTDSVMGP-KHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWA 339 (1249)
T ss_dssp TTTTTCCSC-BCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHH
T ss_pred HHHHhhcCC-ceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHH
Confidence 998543322 26799996 999999999999884322 23445789999999999999999999998875 2455
Q ss_pred HHhc----Ccccch----hhhhhhHHHHHHHhhcCCChhhHHHHhhhccCCCCCccChHHHHHHHHHcCCcccCCCCcHH
Q 002132 409 RISN----SDLWRV----EEMEKGVLSSLLLSYNDLPSKVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAKQNKEME 480 (961)
Q Consensus 409 ~~~~----~~~~~~----~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~ 480 (961)
..+. .....+ ......+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ +
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~ 408 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------T 408 (1249)
T ss_dssp HHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------H
Confidence 4432 221111 11224699999999999999999999999999999999999999999543 4
Q ss_pred HHHHHHHHHHHhCCCcccccccCCCceeeEeechhHHHHHHhhcccc
Q 002132 481 TIGEEYFSILASRSFFQEFEKSYDNRIIECKMHDIVHDFARFVSQNE 527 (961)
Q Consensus 481 ~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e 527 (961)
+.++.++++|+++||++... .++..+|+||++||+||+..+.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 66899999999999998643 345567999999999999987765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.8e-34 Score=337.38 Aligned_cols=306 Identities=21% Similarity=0.251 Sum_probs=233.2
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhh-HhcC-CeEEEEEeCCcccHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEV-KRKF-DKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~ 259 (961)
++.||||+.++++|.++|.... ++.++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4579999999999999997542 25789999999999999999999998766 7889 58999999875 2333333
Q ss_pred ---HHHHHcCCC----CCCCCCHHHHHHHHHHHhCC--ceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh
Q 002132 260 ---AIAEALGIP----SSNLGEFQSLLKLISESITG--KRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 260 ---~i~~~l~~~----~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 330 (961)
.++..++.. .....+.+.+...+...+.+ +++||||||+|+.. .+ .....|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----~l----~~l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----VL----KAFDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----HH----HTTCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----HH----HHhcCCCeEEEECCCcH
Confidence 344455421 12334567777788887765 78999999998632 22 12256899999999998
Q ss_pred hhhhhccCCcceEEc---CCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccCCCHHHH
Q 002132 331 VASMMGSTDTDIITV---MELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSKQIEEEW 407 (961)
Q Consensus 331 ~~~~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w 407 (961)
++..+.. ..+++ .+|+.+|+++||...++.. .....+.+.+|+++|+|+||||..+|+.++.+. ..|
T Consensus 269 ~~~~~~~---~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w 338 (591)
T 1z6t_A 269 VTDSVMG---PKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (591)
T ss_dssp GGTTCCS---CEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH
T ss_pred HHHhcCC---CceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhH
Confidence 8776542 34444 5899999999999988542 122345789999999999999999999998775 356
Q ss_pred HHHhcCcc----cch----hhhhhhHHHHHHHhhcCCChhhHHHHhhhccCCCCCccChHHHHHHHHHcCCcccCCCCcH
Q 002132 408 ERISNSDL----WRV----EEMEKGVLSSLLLSYNDLPSKVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAKQNKEM 479 (961)
Q Consensus 408 ~~~~~~~~----~~~----~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~ 479 (961)
...+.... ..+ ......+..++..||+.||++.|.||++||+||+++.|+.+.+...|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------- 407 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------- 407 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------
Confidence 65543211 111 11234689999999999999999999999999999999999999999532
Q ss_pred HHHHHHHHHHHHhCCCcccccccCCCceeeEeechhHHHHHHhhcc
Q 002132 480 ETIGEEYFSILASRSFFQEFEKSYDNRIIECKMHDIVHDFARFVSQ 525 (961)
Q Consensus 480 ~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mHdlv~~~a~~~~~ 525 (961)
.+.++.++++|+++|||+... ++...+|+||+++|++++....
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhhh
Confidence 245688999999999998543 2345579999999999998743
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=6.4e-28 Score=294.79 Aligned_cols=369 Identities=19% Similarity=0.210 Sum_probs=233.9
Q ss_pred cceeEEEEEecccc-cccccccc-CCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccc-ccCc
Q 002132 547 EKVRHLMLIIGREA-SFRVPICR-VKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTL-KIPR 623 (961)
Q Consensus 547 ~~~r~lsl~~~~~~-~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~-~lp~ 623 (961)
..+++|.+..+... ..+..+.. +++|+.|.+.++... + ..+..|..++.|++|++++|. +. .+|.
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~-----~-~~p~~~~~l~~L~~L~L~~n~------l~~~ip~ 336 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-----G-AVPPFFGSCSLLESLALSSNN------FSGELPM 336 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE-----E-CCCGGGGGCTTCCEEECCSSE------EEEECCH
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC-----C-ccchHHhcCCCccEEECCCCc------ccCcCCH
Confidence 45666666665544 23333333 367777777666422 1 123336677777777777776 44 5665
Q ss_pred c-ccccCccceEEecCCccc-ccchhhhccC-CCcEEeecCcccccccchhhhc--ccCCceeecCCccccccccccCCC
Q 002132 624 N-IEKLVHLRYLNLSCQNIR-KLPETLCELY-NLEKLYITRCLYLEELPEGIGK--LINMKHLLNYRTDSLRYMPVGIGR 698 (961)
Q Consensus 624 ~-i~~L~~Lr~L~L~~~~i~-~Lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~--L~~L~~L~l~~~~~~~~~p~~i~~ 698 (961)
. ++++++|++|++++|.++ .+|..+.++. +|++|++++|.....+|..+.. +++|++|++++|.....+|..+++
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 4 677777777777777766 6677777776 7777777777755566666655 667777777777655566777777
Q ss_pred CCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccC
Q 002132 699 LTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERR 778 (961)
Q Consensus 699 L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 778 (961)
+++|+.|+ ...+.+.+..+..+..+++|+.|++.++...+..+. .+..+++|+.|+++.|....
T Consensus 417 l~~L~~L~----Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~~~~l~~L~~L~L~~N~l~~----- 480 (768)
T 3rgz_A 417 CSELVSLH----LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-------ELMYVKTLETLILDFNDLTG----- 480 (768)
T ss_dssp CTTCCEEE----CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCCEEECCSSCCCS-----
T ss_pred CCCCCEEE----CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH-------HHcCCCCceEEEecCCcccC-----
Confidence 77777776 555555555566677777777777766665544433 45566777777777765542
Q ss_pred CcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEe
Q 002132 779 KNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRV 857 (961)
Q Consensus 779 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~ 857 (961)
.++..+..+++|+.|++++|.+.+.+|.|+..+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++|.....+
T Consensus 481 ------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 481 ------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp ------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred ------cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 1234456677788888888887766778888888888888888877766665 777888888888777643344
Q ss_pred CCcccCC----------------------------------------------------------------cccCcCccc
Q 002132 858 GDECLGI----------------------------------------------------------------EIIDAFPKL 873 (961)
Q Consensus 858 ~~~~~~~----------------------------------------------------------------~~~~~f~~L 873 (961)
|..++.. ..+..+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 4322110 011234667
Q ss_pred ceeecccccccc-ccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEcccccccccccCCCCccc
Q 002132 874 KSLTISSMLELE-EWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKHYRGGTEKTG 952 (961)
Q Consensus 874 ~~L~l~~~~~L~-~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 952 (961)
+.|+|+++. +. .++.. ++.+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|.....+++
T Consensus 635 ~~LdLs~N~-l~g~ip~~--------l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 635 MFLDMSYNM-LSGYIPKE--------IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CEEECCSSC-CBSCCCGG--------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred cEEECcCCc-ccccCCHH--------HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 777777663 22 23322 336666777777766544466666666666777777766666666666666666
Q ss_pred ceEEec
Q 002132 953 LKYHTF 958 (961)
Q Consensus 953 l~~~~~ 958 (961)
|+.+.+
T Consensus 706 L~~L~l 711 (768)
T 3rgz_A 706 LTEIDL 711 (768)
T ss_dssp CSEEEC
T ss_pred CCEEEC
Confidence 655544
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.5e-27 Score=284.43 Aligned_cols=326 Identities=15% Similarity=0.161 Sum_probs=203.6
Q ss_pred HHhhcCCceeEEecCCCCCCCCccccc------------------cCcccc--ccCccceEEecCCccc-ccchhhhccC
Q 002132 594 ELFRESTSLRALDFWGSYDVSPFWTLK------------------IPRNIE--KLVHLRYLNLSCQNIR-KLPETLCELY 652 (961)
Q Consensus 594 ~~~~~~~~Lr~L~L~~~~~~~~~~~~~------------------lp~~i~--~L~~Lr~L~L~~~~i~-~Lp~~i~~L~ 652 (961)
..+.++++|++|+|++|. +.. +|..++ ++++|++|+|++|.+. .+|..+++++
T Consensus 200 ~~l~~l~~L~~L~Ls~n~------l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSP------FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp GGGGGCTTCCEEEEESCC------CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred HHHhcccCCCEEECcCCc------cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 348889999999999998 655 899988 9999999999998855 7899999999
Q ss_pred CCcEEeecCcc-ccc-ccchhhhcc------cCCceeecCCccccccccc--cCCCCCCCCcCCceEeCCCCCcCCCccc
Q 002132 653 NLEKLYITRCL-YLE-ELPEGIGKL------INMKHLLNYRTDSLRYMPV--GIGRLTGLRTLDEFHVIGGGGVDGRKAC 722 (961)
Q Consensus 653 ~L~~L~L~~~~-~l~-~lp~~i~~L------~~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~ 722 (961)
+|++|++++|. ... .+|..+++| ++|++|++++|.. ..+|. .++++++|++|+ ...+.+.+..+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~~ip~~~~l~~l~~L~~L~----L~~N~l~g~ip- 347 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-KTFPVETSLQKMKKLGMLE----CLYNQLEGKLP- 347 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-SSCCCHHHHTTCTTCCEEE----CCSCCCEEECC-
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-CccCchhhhccCCCCCEEe----CcCCcCccchh-
Confidence 99999999997 455 689888887 8999999999864 48888 889999999888 56665554445
Q ss_pred ccccccCCCcCCccccccCCCCCChhhhhccccCCCCC-CCeEEEEeecCCCCCcc--------------CCcchHHHHH
Q 002132 723 WFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKY-LSCLRLSFDEKEQGGER--------------RKNEDDQLLL 787 (961)
Q Consensus 723 ~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~ 787 (961)
.+..+++|+.|++.++... .++. .+..+.+ |+.|+++.|........ ..+......+
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~-------~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPA-------NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCT-------TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred hhCCCCCCCEEECCCCccc-cccH-------hhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch
Confidence 6777777777777666544 2221 3445555 66666666554321000 0000001111
Q ss_pred hhCC-------CCCCCceEEEeeecCCCCCCCccc-cccCccEEEEeCCCCCCcCCC--CC-------Cccccceeeccc
Q 002132 788 EALQ-------PPPDLKELEIRFYRGNTVFPNWLM-SLTNLRSLVLYGCENCEQLPP--LG-------KLQSLEKLSLTI 850 (961)
Q Consensus 788 ~~l~-------~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~--l~-------~l~~L~~L~L~~ 850 (961)
..+. .+++|+.|++++|.+.. +|..+. .+++|+.|+|++|.+. .+|. +. ++++|+.|+|++
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred hhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcC
Confidence 2222 33455566666655554 544433 3566666666666554 3332 11 122566666666
Q ss_pred ccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceeccc------ccccCcCCCCCCC
Q 002132 851 MRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIA------RCPKLKALPDHIH 924 (961)
Q Consensus 851 ~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~------~c~~L~~lp~~~~ 924 (961)
|. ++.++..+.. ..+++|+.|+|+++ .+..++.. +..+++|+.|+++ +|.....+|..+.
T Consensus 498 N~-l~~lp~~~~~----~~l~~L~~L~Ls~N-~l~~ip~~--------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 498 NK-LTKLSDDFRA----TTLPYLVGIDLSYN-SFSKFPTQ--------PLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp SC-CCBCCGGGST----TTCTTCCEEECCSS-CCSSCCCG--------GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred Cc-CCccChhhhh----ccCCCcCEEECCCC-CCCCcChh--------hhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 55 3344432210 14566666666665 34433332 2367777777774 3444556677777
Q ss_pred CCCCccEEEEcccccccccccCCCCcccceEEec
Q 002132 925 QTTTLKELRIWACELLGKHYRGGTEKTGLKYHTF 958 (961)
Q Consensus 925 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~ 958 (961)
++++|+.|++++|.. ..++.... ++|+.+.+
T Consensus 564 ~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~L 594 (636)
T 4eco_A 564 LCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDI 594 (636)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCC--TTCCEEEC
T ss_pred cCCCCCEEECCCCcC-CccCHhHh--CcCCEEEC
Confidence 777777777777776 45554332 45555544
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=2.5e-27 Score=289.58 Aligned_cols=353 Identities=19% Similarity=0.178 Sum_probs=260.2
Q ss_pred cCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccc-ccCccccccCccceEEecCCccc-ccc
Q 002132 568 RVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTL-KIPRNIEKLVHLRYLNLSCQNIR-KLP 645 (961)
Q Consensus 568 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~-~lp~~i~~L~~Lr~L~L~~~~i~-~Lp 645 (961)
.+++|+.|.+.++.. .+.++..++..++.|++|+|++|. +. .+|..++++++|++|+|++|.++ .+|
T Consensus 267 ~l~~L~~L~L~~n~l-----~~~ip~~~~~~~~~L~~L~Ls~n~------l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip 335 (768)
T 3rgz_A 267 PLKSLQYLSLAENKF-----TGEIPDFLSGACDTLTGLDLSGNH------FYGAVPPFFGSCSLLESLALSSNNFSGELP 335 (768)
T ss_dssp CCTTCCEEECCSSEE-----EESCCCCSCTTCTTCSEEECCSSE------EEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred ccCCCCEEECcCCcc-----CCccCHHHHhhcCcCCEEECcCCc------CCCccchHHhcCCCccEEECCCCcccCcCC
Confidence 455555555555431 122233323334777777777776 43 56677777777777777777776 677
Q ss_pred hh-hhccCCCcEEeecCcccccccchhhhccc-CCceeecCCccccccccccCCC--CCCCCcCCceEeCCCCCcCCCcc
Q 002132 646 ET-LCELYNLEKLYITRCLYLEELPEGIGKLI-NMKHLLNYRTDSLRYMPVGIGR--LTGLRTLDEFHVIGGGGVDGRKA 721 (961)
Q Consensus 646 ~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~i~~--L~~L~~L~~~~~~~~~~~~~~~~ 721 (961)
.. +.++++|++|++++|.....+|..+.+++ +|++|++++|.....+|..+.. +++|+.|. ...+.+.+..+
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~----L~~n~l~~~~p 411 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY----LQNNGFTGKIP 411 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE----CCSSEEEEECC
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE----CCCCccccccC
Confidence 65 77777777777777775557777777776 7888887777655566666655 67777777 55565555566
Q ss_pred cccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEE
Q 002132 722 CWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEI 801 (961)
Q Consensus 722 ~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 801 (961)
..+..+++|+.|++.++...+..+. .+..+++|+.|+++.|.... .++..+..+++|+.|++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~L~~n~l~~-----------~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPS-------SLGSLSKLRDLKLWLNMLEG-----------EIPQELMYVKTLETLIL 473 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCG-------GGGGCTTCCEEECCSSCCCS-----------CCCGGGGGCTTCCEEEC
T ss_pred HHHhcCCCCCEEECcCCcccCcccH-------HHhcCCCCCEEECCCCcccC-----------cCCHHHcCCCCceEEEe
Confidence 7788888898888888776655443 46678899999999876542 12445677899999999
Q ss_pred eeecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccc
Q 002132 802 RFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISS 880 (961)
Q Consensus 802 ~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~ 880 (961)
++|.+.+.+|.++..+++|+.|+|++|.+.+.+|. ++.+++|++|+|++|.....++..+ ..+++|+.|++++
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l------~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL------GDCRSLIWLDLNT 547 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG------GGCTTCCEEECCS
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH------cCCCCCCEEECCC
Confidence 99999977899999999999999999999877776 8999999999999998544555443 5789999999998
Q ss_pred cccccccccccc--------------------------------------------------------------cccccc
Q 002132 881 MLELEEWDYGIT--------------------------------------------------------------RTGNTV 898 (961)
Q Consensus 881 ~~~L~~~~~~~~--------------------------------------------------------------~~~~~~ 898 (961)
+.-...++.... +..+..
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 743223322110 011223
Q ss_pred cccccccceecccccccCcCCCCCCCCCCCccEEEEcccccccccccCCCCcccceEEecc
Q 002132 899 INIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKHYRGGTEKTGLKYHTFP 959 (961)
Q Consensus 899 ~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~p 959 (961)
+..+++|+.|++++|.....+|..+.++++|+.|++++|...+.++.....+++|+.+.+.
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 4457899999999998666899999999999999999999999999888888998888764
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1.9e-26 Score=279.04 Aligned_cols=325 Identities=15% Similarity=0.144 Sum_probs=215.0
Q ss_pred HhhcCCceeEEecCCCCCCCCccccc------------------cCcccc--ccCccceEEecCCcc-cccchhhhccCC
Q 002132 595 LFRESTSLRALDFWGSYDVSPFWTLK------------------IPRNIE--KLVHLRYLNLSCQNI-RKLPETLCELYN 653 (961)
Q Consensus 595 ~~~~~~~Lr~L~L~~~~~~~~~~~~~------------------lp~~i~--~L~~Lr~L~L~~~~i-~~Lp~~i~~L~~ 653 (961)
.+.++++|++|+|++|. +.. +|..++ ++++|++|+|++|.+ ..+|..+++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~------Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSP------FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp GGGGCTTCCEEEEESCC------CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred HHhcCCCCCEEECcCCc------CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 47778888888888887 554 788777 888888888888764 477888888888
Q ss_pred CcEEeecCcc-ccc-ccchhhhccc-------CCceeecCCccccccccc--cCCCCCCCCcCCceEeCCCCCcCCCccc
Q 002132 654 LEKLYITRCL-YLE-ELPEGIGKLI-------NMKHLLNYRTDSLRYMPV--GIGRLTGLRTLDEFHVIGGGGVDGRKAC 722 (961)
Q Consensus 654 L~~L~L~~~~-~l~-~lp~~i~~L~-------~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~ 722 (961)
|++|+|++|. ... .+|..+++++ +|++|++++|.. ..+|. .++++++|+.|+ ...+.+. ..+
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~l~~L~~L~~L~----Ls~N~l~-~lp- 589 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLD----CVHNKVR-HLE- 589 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-CBCCCHHHHTTCTTCCEEE----CTTSCCC-BCC-
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-CccCChhhhhcCCCCCEEE----CCCCCcc-cch-
Confidence 8888888886 444 5777777766 888888888764 37777 778888888777 5555555 334
Q ss_pred ccccccCCCcCCccccccCCCCCChhhhhccccCCCCC-CCeEEEEeecCCCCCccC--------------CcchHHH--
Q 002132 723 WFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKY-LSCLRLSFDEKEQGGERR--------------KNEDDQL-- 785 (961)
Q Consensus 723 ~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~--------------~~~~~~~-- 785 (961)
.+..+++|+.|++.++... .++. .+..+.+ |+.|+++.|......... .+.....
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~-------~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPE-------DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCT-------TSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred hhcCCCcceEEECcCCccc-cchH-------HHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 5666667777776666544 2222 2444555 666666555433110000 0000000
Q ss_pred -HHhhCC--CCCCCceEEEeeecCCCCCCCccc-cccCccEEEEeCCCCCCcCCC-C--------CCccccceeeccccc
Q 002132 786 -LLEALQ--PPPDLKELEIRFYRGNTVFPNWLM-SLTNLRSLVLYGCENCEQLPP-L--------GKLQSLEKLSLTIMR 852 (961)
Q Consensus 786 -~~~~l~--~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~-l--------~~l~~L~~L~L~~~~ 852 (961)
+...+. ..++|+.|++++|.+.. +|.++. .+++|+.|+|++|.+. .+|. + +++++|+.|+|++|.
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred cchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC
Confidence 001111 23478888888888876 777665 7888888888888776 4443 2 234588888888886
Q ss_pred CceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccc------cccCcCCCCCCCCC
Q 002132 853 SVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIAR------CPKLKALPDHIHQT 926 (961)
Q Consensus 853 ~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~------c~~L~~lp~~~~~l 926 (961)
+..++..+.. ..+++|+.|+|+++ .+..++.. +..+++|+.|++++ |.....+|..+.++
T Consensus 740 -L~~lp~~l~~----~~l~~L~~L~Ls~N-~L~~lp~~--------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 740 -LTSLSDDFRA----TTLPYLSNMDVSYN-CFSSFPTQ--------PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp -CCCCCGGGST----TTCTTCCEEECCSS-CCSSCCCG--------GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred -CccchHHhhh----ccCCCcCEEEeCCC-CCCccchh--------hhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 5555544321 26788999999887 45555443 33789999999976 54456788888889
Q ss_pred CCccEEEEcccccccccccCCCCcccceEEecc
Q 002132 927 TTLKELRIWACELLGKHYRGGTEKTGLKYHTFP 959 (961)
Q Consensus 927 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~p 959 (961)
++|+.|++++|.. ..++.... ++|+.+.+.
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs 835 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT--PQLYILDIA 835 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC--SSSCEEECC
T ss_pred CCCCEEECCCCCC-CccCHhhc--CCCCEEECC
Confidence 9999999999987 66665432 466666543
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.7e-25 Score=267.29 Aligned_cols=376 Identities=15% Similarity=0.109 Sum_probs=242.5
Q ss_pred cccceeEEEEEeccccccc-cccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-C
Q 002132 545 LDEKVRHLMLIIGREASFR-VPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-P 622 (961)
Q Consensus 545 ~~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p 622 (961)
.+..+++|.+..+...... ..+.++++|++|.+.++.+. .+.+..|.++++|++|+|++|. +..+ |
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~i~~~~~~~l~~L~~L~Ls~n~------l~~~~p 97 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE------TIEDKAWHGLHHLSNLILTGNP------IQSFSP 97 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCC------CCCCCT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc------ccCHHHhhchhhcCEeECCCCc------ccccCh
Confidence 4578899999888776533 36788999999999988653 3345568899999999999998 7666 7
Q ss_pred ccccccCccceEEecCCcccccc-hhhhccCCCcEEeecCccccc-ccchhhhcccCCceeecCCccccccccccCCCCC
Q 002132 623 RNIEKLVHLRYLNLSCQNIRKLP-ETLCELYNLEKLYITRCLYLE-ELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLT 700 (961)
Q Consensus 623 ~~i~~L~~Lr~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~ 700 (961)
..++++++|++|+|++|.++.+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.++
T Consensus 98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177 (606)
T ss_dssp TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence 88999999999999999998886 679999999999999998443 5799999999999999999975555556677777
Q ss_pred CCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCC---------------------------CC---------
Q 002132 701 GLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLG---------------------------DV--------- 744 (961)
Q Consensus 701 ~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~---------------------------~~--------- 744 (961)
+|+.+-..-....+.+....+..+... +|+.|++.++.... ..
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~ 256 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT
T ss_pred ccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhh
Confidence 666311111144444433322222222 45555444332110 00
Q ss_pred ---------------CChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCC
Q 002132 745 ---------------SDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTV 809 (961)
Q Consensus 745 ---------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 809 (961)
....... ..+..+.+|+.|+++.+.... ...+..+++|++|++++|.+..
T Consensus 257 ~l~~l~l~~l~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-------------l~~l~~~~~L~~L~l~~n~l~~- 321 (606)
T 3vq2_A 257 GLCDVTIDEFRLTYTNDFSDDI-VKFHCLANVSAMSLAGVSIKY-------------LEDVPKHFKWQSLSIIRCQLKQ- 321 (606)
T ss_dssp TGGGSEEEEEEECCCTTCCGGG-GSCGGGTTCSEEEEESCCCCC-------------CCCCCTTCCCSEEEEESCCCSS-
T ss_pred hhhhccHhheeccccccccccc-cccccCCCCCEEEecCccchh-------------hhhccccccCCEEEcccccCcc-
Confidence 0000000 114456677777777665432 1145666788888888888744
Q ss_pred CCCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEe---CCcccCCcccCcCcccceeeccccccccc
Q 002132 810 FPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRV---GDECLGIEIIDAFPKLKSLTISSMLELEE 886 (961)
Q Consensus 810 lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~---~~~~~~~~~~~~f~~L~~L~l~~~~~L~~ 886 (961)
+|.+ .+++|+.|++++|...... .++.+++|++|++++|. +..+ +..+ ..+++|+.|+++++. +..
T Consensus 322 lp~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~------~~~~~L~~L~L~~n~-l~~ 390 (606)
T 3vq2_A 322 FPTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSD------LGTNSLRHLDLSFNG-AII 390 (606)
T ss_dssp CCCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHH------HCCSCCCEEECCSCS-EEE
T ss_pred cccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhh------ccCCcccEeECCCCc-ccc
Confidence 7754 7778888888877544433 45667777777777765 3333 1111 234445555444431 222
Q ss_pred cccccc----------------cccc-cccccccccceecccccccCcCCCCCCCCCCCccEEEEcccccccc-cccCCC
Q 002132 887 WDYGIT----------------RTGN-TVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGK-HYRGGT 948 (961)
Q Consensus 887 ~~~~~~----------------~~~~-~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~-~~~~~~ 948 (961)
++.... +..+ ..+..+++|+.|++++|......|..+..+++|+.|++++|..... .+....
T Consensus 391 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 470 (606)
T 3vq2_A 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470 (606)
T ss_dssp ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc
Confidence 111000 0011 1244677888888888875555677777788888888888877653 455566
Q ss_pred CcccceEEecc
Q 002132 949 EKTGLKYHTFP 959 (961)
Q Consensus 949 ~~~~l~~~~~p 959 (961)
.+++|+.+.+.
T Consensus 471 ~l~~L~~L~Ls 481 (606)
T 3vq2_A 471 NTTNLTFLDLS 481 (606)
T ss_dssp TCTTCCEEECT
T ss_pred cCCCCCEEECC
Confidence 67777776654
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=5.2e-26 Score=275.11 Aligned_cols=353 Identities=12% Similarity=0.131 Sum_probs=237.5
Q ss_pred cceeEEEEEeccccc------------------cccccc--cCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEe
Q 002132 547 EKVRHLMLIIGREAS------------------FRVPIC--RVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALD 606 (961)
Q Consensus 547 ~~~r~lsl~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~ 606 (961)
.+++.|.+..+.+.. .+..+. .+++|+.|.+.++... +.++ ..|.++++|++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-----~~iP-~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-----TQLP-DFLYDLPELQSLN 521 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-----CSCC-GGGGGCSSCCEEE
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-----ccCh-HHHhCCCCCCEEE
Confidence 467777777776654 455554 7777777777776532 1223 3467777777777
Q ss_pred cCCCCCCCCcccc-ccCccccccC-------ccceEEecCCcccccch--hhhccCCCcEEeecCcccccccchhhhccc
Q 002132 607 FWGSYDVSPFWTL-KIPRNIEKLV-------HLRYLNLSCQNIRKLPE--TLCELYNLEKLYITRCLYLEELPEGIGKLI 676 (961)
Q Consensus 607 L~~~~~~~~~~~~-~lp~~i~~L~-------~Lr~L~L~~~~i~~Lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 676 (961)
|++|..+ .. .+|..++++. +|++|+|++|.++.+|. .++++++|++|++++|. +..+| .+++++
T Consensus 522 Ls~N~~l----sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~ 595 (876)
T 4ecn_A 522 IACNRGI----SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNV 595 (876)
T ss_dssp CTTCTTS----CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTS
T ss_pred CcCCCCc----ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCC
Confidence 7777421 12 3566555554 77777777777777777 77777777777777777 44777 677777
Q ss_pred CCceeecCCccccccccccCCCCCC-CCcCCceEeCCCCCcCCCccccccccc--CCCcCCccccccCCCCCChhhhhcc
Q 002132 677 NMKHLLNYRTDSLRYMPVGIGRLTG-LRTLDEFHVIGGGGVDGRKACWFESLK--NLKHLQVCGIRRLGDVSDVGEAKRL 753 (961)
Q Consensus 677 ~L~~L~l~~~~~~~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~~~l~~L~--~L~~L~~~~~~~~~~~~~~~~~~~~ 753 (961)
+|++|++++|.. ..+|..+..+++ |+.|+ ...+.+. ..+..+..+. +|+.|++.++...+.++.... ..
T Consensus 596 ~L~~L~Ls~N~l-~~lp~~l~~l~~~L~~L~----Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~--~l 667 (876)
T 4ecn_A 596 KLTDLKLDYNQI-EEIPEDFCAFTDQVEGLG----FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC--SM 667 (876)
T ss_dssp EESEEECCSSCC-SCCCTTSCEECTTCCEEE----CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS--CT
T ss_pred cceEEECcCCcc-ccchHHHhhccccCCEEE----CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchh--hh
Confidence 777777777753 367777777777 77776 5555554 3344444443 367777766665443332110 01
Q ss_pred ccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCcccc--------ccCccEEEE
Q 002132 754 ELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMS--------LTNLRSLVL 825 (961)
Q Consensus 754 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~--------l~~L~~L~L 825 (961)
....+.+|+.|+++.|..... .. ..+..+++|+.|+|++|.+.. +|.++.. +++|+.|+|
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~l--------p~---~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKF--------PT---ELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSC--------CH---HHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred ccccCCCcCEEEccCCcCCcc--------CH---HHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEEC
Confidence 111345788888888765421 11 123357899999999999986 8877653 349999999
Q ss_pred eCCCCCCcCCC-CC--CccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccc
Q 002132 826 YGCENCEQLPP-LG--KLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIM 902 (961)
Q Consensus 826 ~~~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~ 902 (961)
++|.+. .+|. +. .+++|+.|+|++|. +..++..+ ..+++|+.|+|+++..+..-.. .+..+..+..+
T Consensus 736 s~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l------~~L~~L~~L~Ls~N~~ls~N~l--~~~ip~~l~~L 805 (876)
T 4ecn_A 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQP------LNSSQLKAFGIRHQRDAEGNRI--LRQWPTGITTC 805 (876)
T ss_dssp CSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGG------GGCTTCCEEECCCCBCTTCCBC--CCCCCTTGGGC
T ss_pred CCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchhh------hcCCCCCEEECCCCCCcccccc--cccChHHHhcC
Confidence 999887 5554 65 99999999999997 44455433 5789999999987542211110 11223345589
Q ss_pred cccceecccccccCcCCCCCCCCCCCccEEEEcccccccccc
Q 002132 903 PRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKHY 944 (961)
Q Consensus 903 p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~~ 944 (961)
++|+.|++++|. +..+|..+. ++|+.|+|++|+...-.+
T Consensus 806 ~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 806 PSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp SSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred CCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCCCccCh
Confidence 999999999997 599999755 899999999999755443
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=7.7e-26 Score=269.81 Aligned_cols=356 Identities=13% Similarity=0.103 Sum_probs=264.8
Q ss_pred ccceeEEEEEeccccc------------------cccccc--cCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEE
Q 002132 546 DEKVRHLMLIIGREAS------------------FRVPIC--RVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRAL 605 (961)
Q Consensus 546 ~~~~r~lsl~~~~~~~------------------~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L 605 (961)
...++.|.+..+.... .+..+. .+++|++|.+.++... +.++ ..+.++++|++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-----~~~p-~~l~~l~~L~~L 278 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-----TKLP-TFLKALPEMQLI 278 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC-----SSCC-TTTTTCSSCCEE
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC-----ccCh-HHHhcCCCCCEE
Confidence 4578999999988776 677777 8999999999988643 2233 447889999999
Q ss_pred ecCCCCCCCCcccc-ccCcccccc------CccceEEecCCcccccch--hhhccCCCcEEeecCcccccccchhhhccc
Q 002132 606 DFWGSYDVSPFWTL-KIPRNIEKL------VHLRYLNLSCQNIRKLPE--TLCELYNLEKLYITRCLYLEELPEGIGKLI 676 (961)
Q Consensus 606 ~L~~~~~~~~~~~~-~lp~~i~~L------~~Lr~L~L~~~~i~~Lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 676 (961)
++++|..+ .. .+|..++++ ++|++|+|++|.++.+|. .++++++|++|++++|.....+| .++.++
T Consensus 279 ~Ls~n~~l----~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 279 NVACNRGI----SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp ECTTCTTS----CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred ECcCCCCC----ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 99999621 22 578888876 899999999999999998 89999999999999998544899 899999
Q ss_pred CCceeecCCccccccccccCCCCCC-CCcCCceEeCCCCCcCCCccccccccc--CCCcCCccccccCCCCCChhhhhcc
Q 002132 677 NMKHLLNYRTDSLRYMPVGIGRLTG-LRTLDEFHVIGGGGVDGRKACWFESLK--NLKHLQVCGIRRLGDVSDVGEAKRL 753 (961)
Q Consensus 677 ~L~~L~l~~~~~~~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~~~l~~L~--~L~~L~~~~~~~~~~~~~~~~~~~~ 753 (961)
+|++|++++|. +..+|..++.+++ |++|+ ...+.+. ..+..+..+. +|+.|++.++...+..+..-.....
T Consensus 354 ~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~----Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 354 KLASLNLAYNQ-ITEIPANFCGFTEQVENLS----FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EESEEECCSSE-EEECCTTSEEECTTCCEEE----CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCEEECCCCc-cccccHhhhhhcccCcEEE----ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 99999999996 4588888999998 99988 6666665 3455555543 7888888887765544331000011
Q ss_pred ccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCcccc--------ccCccEEEE
Q 002132 754 ELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMS--------LTNLRSLVL 825 (961)
Q Consensus 754 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~--------l~~L~~L~L 825 (961)
....+.+|+.|+++.|...... ...+..+++|+.|++++|.+.. +|..+.. +++|+.|+|
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp-----------~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFP-----------KELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCC-----------THHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEEC
T ss_pred ccccCCCCCEEECcCCccCcCC-----------HHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEEC
Confidence 1125678999999988765211 1123457899999999999986 8876543 239999999
Q ss_pred eCCCCCCcCCC-CC--CccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccc
Q 002132 826 YGCENCEQLPP-LG--KLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIM 902 (961)
Q Consensus 826 ~~~~~~~~l~~-l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~ 902 (961)
++|.+. .+|. +. .+++|+.|+|++|. +..++..+ ..+++|+.|+|+++..+..-.. .+..+..+..+
T Consensus 496 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~------~~l~~L~~L~Ls~N~~ls~N~l--~~~~p~~l~~l 565 (636)
T 4eco_A 496 RFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQP------LNSSTLKGFGIRNQRDAQGNRT--LREWPEGITLC 565 (636)
T ss_dssp CSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCCGG------GGCSSCCEEECCSCBCTTCCBC--CCCCCTTGGGC
T ss_pred cCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcChhh------hcCCCCCEEECCCCcccccCcc--cccChHHHhcC
Confidence 999887 5655 65 99999999999998 44465443 4789999999976431111000 11222334589
Q ss_pred cccceecccccccCcCCCCCCCCCCCccEEEEccccccccc
Q 002132 903 PRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKH 943 (961)
Q Consensus 903 p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~ 943 (961)
++|++|++++|. ++.+|..+. ++|+.|++++|+...-.
T Consensus 566 ~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 566 PSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp SSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCCcccc
Confidence 999999999997 599998765 89999999999876543
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=3.6e-25 Score=264.45 Aligned_cols=370 Identities=15% Similarity=0.117 Sum_probs=220.0
Q ss_pred cccceeEEEEEecccccc-ccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-C
Q 002132 545 LDEKVRHLMLIIGREASF-RVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-P 622 (961)
Q Consensus 545 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p 622 (961)
.+..+++|.+..+..... +..+..+++|++|.+.++.+. .+.+..|.++++|++|+|++|. +..+ |
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~ 98 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------WIHEDTFQSQHRLDTLVLTANP------LIFMAE 98 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCC------CSEECT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc------eeChhhccCccccCeeeCCCCc------ccccCh
Confidence 456789999998877764 457889999999999988643 2345558899999999999998 6554 6
Q ss_pred ccccccCccceEEecCCccccc-chhhhccCCCcEEeecCccccccc--chhhhcccCCceeecCCccccccccccCCCC
Q 002132 623 RNIEKLVHLRYLNLSCQNIRKL-PETLCELYNLEKLYITRCLYLEEL--PEGIGKLINMKHLLNYRTDSLRYMPVGIGRL 699 (961)
Q Consensus 623 ~~i~~L~~Lr~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L 699 (961)
..++++++|++|++++|.++.+ |..++++++|++|++++|. +..+ |. +..+++|++|++++|......|..++.+
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc-ccCCcccCEEEcccCcccccChhhhhhh
Confidence 7899999999999999999987 6778999999999999998 4444 44 4559999999999987554445667788
Q ss_pred CCCC--cCCceEeCCCCCcCCCccccccc-------------------------------------------------cc
Q 002132 700 TGLR--TLDEFHVIGGGGVDGRKACWFES-------------------------------------------------LK 728 (961)
Q Consensus 700 ~~L~--~L~~~~~~~~~~~~~~~~~~l~~-------------------------------------------------L~ 728 (961)
++|+ .|+ ...+.+....+..+.. +.
T Consensus 177 ~~L~~l~L~----l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 177 QQATNLSLN----LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp TTCCSEEEE----CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred cccceeEEe----cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 8887 333 3333332221111111 00
Q ss_pred --CCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecC
Q 002132 729 --NLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRG 806 (961)
Q Consensus 729 --~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 806 (961)
+|+.|++.++...+. ....+..+++|+.|+++.+.... ++..+..+++|++|++++|.+
T Consensus 253 ~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~------------lp~~l~~l~~L~~L~l~~n~l 313 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNI-------SSNTFHCFSGLQELDLTATHLSE------------LPSGLVGLSTLKKLVLSANKF 313 (606)
T ss_dssp GSEEEEEECTTCCCSSC-------CTTTTTTCTTCSEEECTTSCCSC------------CCSSCCSCTTCCEEECTTCCC
T ss_pred cCceeEEEeecCccCcc-------CHHHhccccCCCEEeccCCccCC------------CChhhcccccCCEEECccCCc
Confidence 112222222211111 01124455666666666554331 122344455566666655555
Q ss_pred CCCCCCccccccCccEEEEeCCCCCCcCCC--CCCccccceeecccccCceEeC---CcccC------------------
Q 002132 807 NTVFPNWLMSLTNLRSLVLYGCENCEQLPP--LGKLQSLEKLSLTIMRSVKRVG---DECLG------------------ 863 (961)
Q Consensus 807 ~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~---~~~~~------------------ 863 (961)
....|..+..+++|+.|++++|.+...++. ++.+++|++|++++|. +...+ ..+..
T Consensus 314 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 392 (606)
T 3t6q_A 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392 (606)
T ss_dssp SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCC
Confidence 542344555555555555555554433332 5555555555555554 22221 10000
Q ss_pred CcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEccccccccc
Q 002132 864 IEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKH 943 (961)
Q Consensus 864 ~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~ 943 (961)
...+..+++|+.|+++++. +..... +..+..+++|+.|++++|..-...|..+..+++|++|++++|+.....
T Consensus 393 ~~~~~~l~~L~~L~l~~n~-l~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTR-LKVKDA------QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp TTTTTTCTTCSEEECTTCC-EECCTT------CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred HHHhcCCccCCeEECCCCc-CCCccc------chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence 0001234445555554442 211110 111446788888888888644445666777888888888888765532
Q ss_pred c---cCCCCcccceEEecc
Q 002132 944 Y---RGGTEKTGLKYHTFP 959 (961)
Q Consensus 944 ~---~~~~~~~~l~~~~~p 959 (961)
+ .....+++|+.+.+.
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp ECSSCGGGGCTTCCEEECT
T ss_pred cccchhhccCCCccEEECC
Confidence 2 234456667666553
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=4.5e-25 Score=263.58 Aligned_cols=351 Identities=17% Similarity=0.097 Sum_probs=245.6
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCccccc-chh
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKL-PET 647 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~L-p~~ 647 (961)
++++.|.+.++... .+++..|.++++|++|+|++|. +..+ |..++++++|++|+|++|.++.+ |..
T Consensus 32 ~~l~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK------ILKSYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCcCEEECCCCCcC------EeChhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 78999999998754 2344458899999999999998 7776 56789999999999999999987 888
Q ss_pred hhccCCCcEEeecCcccccccc-hhhhcccCCceeecCCccccc-cccccCCCCCCCCcCCceEeCCCCCcCCCcccccc
Q 002132 648 LCELYNLEKLYITRCLYLEELP-EGIGKLINMKHLLNYRTDSLR-YMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFE 725 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~ 725 (961)
++++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|+ ...+.+....+..+.
T Consensus 100 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~----Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 100 FSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD----LSYNYIQTITVNDLQ 174 (606)
T ss_dssp STTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE----CCSSCCCEECTTTTH
T ss_pred cCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE----ccCCcceecChhhhh
Confidence 9999999999999998 55554 779999999999999997543 5789999999999998 666766665566677
Q ss_pred cccCCC----cCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCC-------------------------CCCc
Q 002132 726 SLKNLK----HLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKE-------------------------QGGE 776 (961)
Q Consensus 726 ~L~~L~----~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-------------------------~~~~ 776 (961)
.+.+|+ .|++..+......+. .+. ..+|+.|+++++... ....
T Consensus 175 ~l~~L~~~l~~L~l~~n~l~~~~~~-------~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 175 FLRENPQVNLSLDMSLNPIDFIQDQ-------AFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp HHHHCTTCCCEEECTTCCCCEECTT-------TTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred hhhccccccceeeccCCCcceeCcc-------ccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 777665 355555443221111 111 124555555554321 0000
Q ss_pred c----------------------CCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcC
Q 002132 777 R----------------------RKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQL 834 (961)
Q Consensus 777 ~----------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 834 (961)
. ..+......+ .+..+++|+.|+++++.+.. +| ++..+++|+.|++++|.+ ..+
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~l 322 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQF 322 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSC
T ss_pred ccccChHHhhhhhhccHhheecccccccccccc-ccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-ccc
Confidence 0 0001111112 25667899999999999877 88 888999999999999988 778
Q ss_pred CCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccc---cccc---------------cccc
Q 002132 835 PPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWD---YGIT---------------RTGN 896 (961)
Q Consensus 835 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~---~~~~---------------~~~~ 896 (961)
|.+ .+++|+.|++++|..+...+ ...+++|+.|+++++ .+.... .... ...+
T Consensus 323 p~~-~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 392 (606)
T 3vq2_A 323 PTL-DLPFLKSLTLTMNKGSISFK--------KVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392 (606)
T ss_dssp CCC-CCSSCCEEEEESCSSCEECC--------CCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEEC
T ss_pred ccC-CCCccceeeccCCcCccchh--------hccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccccch
Confidence 888 99999999999997555431 257899999999987 333331 1111 0111
Q ss_pred cccccccccceecccccccCcCCC-CCCCCCCCccEEEEcccccccccccCCCCcccceEEecc
Q 002132 897 TVINIMPRLSSLTIARCPKLKALP-DHIHQTTTLKELRIWACELLGKHYRGGTEKTGLKYHTFP 959 (961)
Q Consensus 897 ~~~~~~p~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~p 959 (961)
..+..+++|+.|++++|......| ..+..+++|+.|++++|......+......++|+.+.+.
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 234455666666666665333333 355667777777777777666555556666666666553
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=9.4e-25 Score=245.30 Aligned_cols=308 Identities=18% Similarity=0.153 Sum_probs=240.2
Q ss_pred ccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCcccccc
Q 002132 567 CRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIRKLP 645 (961)
Q Consensus 567 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~Lp 645 (961)
..+++++.|.+.++... .++..+|..+++|++|+|++|. +..+| ..+..+++|++|+|++|.++.+|
T Consensus 42 ~~l~~l~~l~l~~~~l~------~l~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR------KLPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGGCCCSEEEEESCEES------EECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cccCCceEEEecCCchh------hCChhHhcccccCcEEECCCCc------ccccChhhccCCCCcCEEECCCCCCCcCC
Confidence 35688999999887532 4566678899999999999998 77765 47899999999999999999875
Q ss_pred h-hhhccCCCcEEeecCcccccccchhh-hcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccc
Q 002132 646 E-TLCELYNLEKLYITRCLYLEELPEGI-GKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACW 723 (961)
Q Consensus 646 ~-~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 723 (961)
. .++++++|++|++++|. +..+|..+ .++++|++|++++|......|..++.+++|++|+ ...+.+... .
T Consensus 110 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~----l~~n~l~~~---~ 181 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ----LSSNRLTHV---D 181 (390)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE----CCSSCCSBC---C
T ss_pred HHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE----CCCCcCCcc---c
Confidence 4 58999999999999998 77888764 8899999999999975544455688899999988 555544432 3
Q ss_pred cccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEee
Q 002132 724 FESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRF 803 (961)
Q Consensus 724 l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 803 (961)
+..+++|+.|++.++... .+....+|+.|+++.+..... ....+++|+.|++++
T Consensus 182 ~~~l~~L~~L~l~~n~l~------------~~~~~~~L~~L~l~~n~l~~~--------------~~~~~~~L~~L~l~~ 235 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLS------------TLAIPIAVEELDASHNSINVV--------------RGPVNVELTILKLQH 235 (390)
T ss_dssp GGGCTTCSEEECCSSCCS------------EEECCSSCSEEECCSSCCCEE--------------ECCCCSSCCEEECCS
T ss_pred cccccccceeeccccccc------------ccCCCCcceEEECCCCeeeec--------------cccccccccEEECCC
Confidence 556677777777655332 123345789999988765421 112357999999999
Q ss_pred ecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccc
Q 002132 804 YRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSML 882 (961)
Q Consensus 804 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 882 (961)
|.+.. +.++..+++|+.|+|++|.+....|. ++.+++|+.|+|++|. ++.++... ..+|+|+.|+++++
T Consensus 236 n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------~~l~~L~~L~L~~n- 305 (390)
T 3o6n_A 236 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------QPIPTLKVLDLSHN- 305 (390)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSS------SCCTTCCEEECCSS-
T ss_pred CCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCccc------CCCCCCCEEECCCC-
Confidence 99887 46888999999999999988766554 8999999999999987 66654322 47899999999998
Q ss_pred cccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEccccccc
Q 002132 883 ELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLG 941 (961)
Q Consensus 883 ~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~ 941 (961)
.+..++.... .+++|+.|++.+|+ ++.+| +..+++|+.|++++|+.-.
T Consensus 306 ~l~~~~~~~~--------~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 306 HLLHVERNQP--------QFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCCCCGGGHH--------HHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred cceecCcccc--------ccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCccc
Confidence 5666654433 78999999999997 77777 4678999999999998643
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2.6e-25 Score=262.40 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=119.2
Q ss_pred ccceeEEEEEecccccc-ccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcc
Q 002132 546 DEKVRHLMLIIGREASF-RVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRN 624 (961)
Q Consensus 546 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 624 (961)
...+++|.+..+..... +..+..+++|++|.+.++.+. .+++..|..+++|++|+|++|. +..+|..
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~ 92 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNH------LSSLSSS 92 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSC------CCSCCHH
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCc------cCccCHH
Confidence 46789999988876653 456788999999999988753 2344558889999999999998 7777654
Q ss_pred -ccccCccceEEecCCcccc--cchhhhccCCCcEEeecCcccccccc-hhhhcccCCceeecCCccccccccccCCCCC
Q 002132 625 -IEKLVHLRYLNLSCQNIRK--LPETLCELYNLEKLYITRCLYLEELP-EGIGKLINMKHLLNYRTDSLRYMPVGIGRLT 700 (961)
Q Consensus 625 -i~~L~~Lr~L~L~~~~i~~--Lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~ 700 (961)
++++++|++|+|++|.++. .|..++++++|++|++++|..+..+| ..+.++++|++|++++|......|..++.++
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc
Confidence 8899999999999999884 46788999999999999988667776 4788999999999998876666777777777
Q ss_pred CCCcCC
Q 002132 701 GLRTLD 706 (961)
Q Consensus 701 ~L~~L~ 706 (961)
+|++|+
T Consensus 173 ~L~~L~ 178 (549)
T 2z81_A 173 DIHHLT 178 (549)
T ss_dssp EEEEEE
T ss_pred cCceEe
Confidence 666665
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=8.3e-25 Score=256.02 Aligned_cols=367 Identities=17% Similarity=0.145 Sum_probs=189.6
Q ss_pred cceeEEEEEeccccccc-cccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccc
Q 002132 547 EKVRHLMLIIGREASFR-VPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNI 625 (961)
Q Consensus 547 ~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 625 (961)
..+++|.+..+...... ..+..+++|++|.+.++.+. .+.+..|..+++|++|+|++|. +..+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~N~------l~~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ------YLDISVFKFNQELEYLDLSHNK------LVKISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC------EEEGGGGTTCTTCCEEECCSSC------CCEEECC-
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccC------CcChHHhhcccCCCEEecCCCc------eeecCcc-
Confidence 56777777777665432 35667777777777776543 2234446777777777777776 6667665
Q ss_pred cccCccceEEecCCcccc--cchhhhccCCCcEEeecCcccccccchhhhcccCC--ceeecCCccc--cccccccCCCC
Q 002132 626 EKLVHLRYLNLSCQNIRK--LPETLCELYNLEKLYITRCLYLEELPEGIGKLINM--KHLLNYRTDS--LRYMPVGIGRL 699 (961)
Q Consensus 626 ~~L~~Lr~L~L~~~~i~~--Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~p~~i~~L 699 (961)
.+++|++|+|++|.++. +|..++++++|++|++++|. +.. ..+..+++| ++|++++|.. ....|..+..+
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccc
Confidence 67777777777777764 46677777777777777776 332 345666666 7777777754 34444444442
Q ss_pred --------------------------CCCCcCCceEeCCCCC---cCCCccccccccc----------------------
Q 002132 700 --------------------------TGLRTLDEFHVIGGGG---VDGRKACWFESLK---------------------- 728 (961)
Q Consensus 700 --------------------------~~L~~L~~~~~~~~~~---~~~~~~~~l~~L~---------------------- 728 (961)
++|+.|+......... +.+.. ..+..++
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~ 242 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQ 242 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHH
Confidence 2233332111000000 00000 0112222
Q ss_pred -----CCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHh---------------
Q 002132 729 -----NLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLE--------------- 788 (961)
Q Consensus 729 -----~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--------------- 788 (961)
+|+.|++.++...+.++..- ......++++|+.++++.+... .. .........
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~~~l~~L~~l~l~~n~~~-~p----~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRD--FDYSGTSLKALSIHQVVSDVFG-FP----QSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCC--CCCCSCCCCEEEEEEEEECCCC-SC----THHHHHHHHTCCCSEEEEESSCCC
T ss_pred HhhhCcccEEEeecccccCccccch--hhcccccCceeEecccccccee-cc----hhhhhcccccCceeEEEcCCCccc
Confidence 23333333322221211100 0000033344444444433320 00 000000000
Q ss_pred ---hCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCC--cCCC-CCCccccceeecccccCceE-eCCcc
Q 002132 789 ---ALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCE--QLPP-LGKLQSLEKLSLTIMRSVKR-VGDEC 861 (961)
Q Consensus 789 ---~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~l~~-l~~l~~L~~L~L~~~~~l~~-~~~~~ 861 (961)
....+++|++|++++|.+...+|.++..+++|+.|+|++|.+.. .+|. ++.+++|++|++++|. +.. ++...
T Consensus 316 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~ 394 (520)
T 2z7x_B 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGD 394 (520)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCS
T ss_pred cccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccch
Confidence 01456778888888887776667777778888888888887654 3333 6777888888888776 333 44321
Q ss_pred cCCcccCcCcccceeeccccccccccccccccccccccccc-cccceecccccccCcCCCCCCCCCCCccEEEEcccccc
Q 002132 862 LGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIM-PRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELL 940 (961)
Q Consensus 862 ~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~-p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l 940 (961)
+ ..+++|+.|+++++. +...... .+ ++|+.|++++|. ++.+|..+..+++|+.|++++|+..
T Consensus 395 ~-----~~l~~L~~L~Ls~N~-l~~~~~~----------~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 395 C-----SWTKSLLSLNMSSNI-LTDTIFR----------CLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp C-----CCCTTCCEEECCSSC-CCGGGGG----------SCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred h-----ccCccCCEEECcCCC-CCcchhh----------hhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcCC
Confidence 1 345666666666652 2111100 11 455555555553 4455554455555555555555433
Q ss_pred cccccC-CCCcccceEEe
Q 002132 941 GKHYRG-GTEKTGLKYHT 957 (961)
Q Consensus 941 ~~~~~~-~~~~~~l~~~~ 957 (961)
.++.. ...+++|+.+.
T Consensus 458 -~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 458 -SVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp -CCCTTTTTTCTTCCEEE
T ss_pred -ccCHHHhccCCcccEEE
Confidence 33332 33444444443
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=257.74 Aligned_cols=377 Identities=16% Similarity=0.130 Sum_probs=237.0
Q ss_pred cccceeEEEEEecccccc-ccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-
Q 002132 545 LDEKVRHLMLIIGREASF-RVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP- 622 (961)
Q Consensus 545 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp- 622 (961)
.+..+++|.+..+..... ...+..+++|++|.+.++.+. .+++..|.++++|++|+|++|. +..+|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~i~~~~~~~l~~L~~L~L~~n~------l~~~~~ 93 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNP------IQSLAL 93 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCC------CCEECT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC------ccCcccccCchhCCEEeCcCCc------CCccCH
Confidence 456789999988877653 346788999999999988643 2345568899999999999998 76665
Q ss_pred ccccccCccceEEecCCcccccch-hhhccCCCcEEeecCccccc-ccchhhhcccCCceeecCCccccccccccCCCCC
Q 002132 623 RNIEKLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLE-ELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLT 700 (961)
Q Consensus 623 ~~i~~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~ 700 (961)
..++++.+|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.++
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 679999999999999999998876 68999999999999998443 4799999999999999999975544556677777
Q ss_pred CCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccC---------------------------C---CCC-----
Q 002132 701 GLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRL---------------------------G---DVS----- 745 (961)
Q Consensus 701 ~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~---------------------------~---~~~----- 745 (961)
+|+.+...-....+.+....+..+..+ +|+.|++.++... . .++
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred ccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 773322111144444433323333222 3333333222100 0 000
Q ss_pred ----------------ChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCC
Q 002132 746 ----------------DVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTV 809 (961)
Q Consensus 746 ----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 809 (961)
.........+..+++|+.|+++.+.... ++..+..+ +|++|++++|.+..
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~------------l~~~~~~~-~L~~L~l~~n~~~~- 318 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER------------VKDFSYNF-GWQHLELVNCKFGQ- 318 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS------------CCBCCSCC-CCSEEEEESCBCSS-
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh------------hhhhhccC-CccEEeeccCcccc-
Confidence 0000011123445667777776654331 12233444 66777777666654
Q ss_pred CCCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeC---CcccCC-----------------cccCc
Q 002132 810 FPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVG---DECLGI-----------------EIIDA 869 (961)
Q Consensus 810 lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~---~~~~~~-----------------~~~~~ 869 (961)
+|. ..+++|+.|++++|......+. ..+++|+.|++++|. +...+ ..+... ..+..
T Consensus 319 l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 394 (570)
T 2z63_A 319 FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394 (570)
T ss_dssp CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEET
T ss_pred cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccc
Confidence 554 3556666666666655444433 566777777776665 32221 100000 00123
Q ss_pred CcccceeeccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEcccccc-cccccCCC
Q 002132 870 FPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELL-GKHYRGGT 948 (961)
Q Consensus 870 f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l-~~~~~~~~ 948 (961)
+++|+.|+++++. +..... ...+..+++|+.|++++|......|..+..+++|+.|++++|... ..++....
T Consensus 395 l~~L~~L~l~~n~-l~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 395 LEQLEHLDFQHSN-LKQMSE------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp CTTCCEEECTTSE-EESCTT------SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred cCCCCEEEccCCc-cccccc------hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 4444444444431 221111 112447888999999998755566777788899999999999876 35666777
Q ss_pred CcccceEEecc
Q 002132 949 EKTGLKYHTFP 959 (961)
Q Consensus 949 ~~~~l~~~~~p 959 (961)
.+++|+.+.+.
T Consensus 468 ~l~~L~~L~l~ 478 (570)
T 2z63_A 468 ELRNLTFLDLS 478 (570)
T ss_dssp TCTTCCEEECT
T ss_pred cccCCCEEECC
Confidence 77888877664
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.3e-24 Score=249.80 Aligned_cols=365 Identities=15% Similarity=0.143 Sum_probs=229.7
Q ss_pred cccceeEEEEEecccccc-ccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-C
Q 002132 545 LDEKVRHLMLIIGREASF-RVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-P 622 (961)
Q Consensus 545 ~~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p 622 (961)
.+..+++|.+..+..... +..+..+++|++|.+.++... ..+++..|..+++|++|+|++|. +..+ |
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-----~~i~~~~~~~l~~L~~L~Ls~n~------l~~~~~ 96 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-----LVIRNNTFRGLSSLIILKLDYNQ------FLQLET 96 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-----CEECTTTTTTCTTCCEEECTTCT------TCEECT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-----ceECcccccccccCCEEeCCCCc------cCccCh
Confidence 445677777777665543 445667777777777766432 12334456677777777777776 5444 5
Q ss_pred ccccccCccceEEecCCcccc-cchh--hhccCCCcEEeecCcccccccchh-hhcccCCceeecCCccccccccccCCC
Q 002132 623 RNIEKLVHLRYLNLSCQNIRK-LPET--LCELYNLEKLYITRCLYLEELPEG-IGKLINMKHLLNYRTDSLRYMPVGIGR 698 (961)
Q Consensus 623 ~~i~~L~~Lr~L~L~~~~i~~-Lp~~--i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~ 698 (961)
..++++++|++|+|++|.++. +|.. +.++++|++|++++|......|.. +.++++|++|++++|......|..+..
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 667777777777777777764 3444 677777777777777743333554 667777777777777654444555554
Q ss_pred C--CCCCcCCceEeCCCCCcCCCcccc--------cccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEe
Q 002132 699 L--TGLRTLDEFHVIGGGGVDGRKACW--------FESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSF 768 (961)
Q Consensus 699 L--~~L~~L~~~~~~~~~~~~~~~~~~--------l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 768 (961)
+ .+|+.|+ ...+.+....+.. +..+++|+.|++.++...+..+ . .........+|+.|.++.
T Consensus 177 l~~~~L~~L~----l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~-~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 177 FQGKHFTLLR----LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA---K-RFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp GTTCEEEEEE----CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH---H-HHHHHTTTCCEEEEECTT
T ss_pred cccccccccc----cccCcccccchhhccccccccccccceeeeEecCCCcccccch---h-hhhccccccceeeEeecc
Confidence 4 3344444 3333332221111 2234556666665554322111 0 111112235667777665
Q ss_pred ecCCCCCccCC--cchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCC-CCCCccccce
Q 002132 769 DEKEQGGERRK--NEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLP-PLGKLQSLEK 845 (961)
Q Consensus 769 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~ 845 (961)
+.......... .......... ..+++|+.|++++|.+....|.++..+++|+.|+|++|.+.+..| .++++++|++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccccccchhhhccCccccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 53221000000 0000000000 123689999999999988678889999999999999998877666 4899999999
Q ss_pred eecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCCC-CCC
Q 002132 846 LSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPD-HIH 924 (961)
Q Consensus 846 L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~~~ 924 (961)
|+|++|. +..++...+ ..+++|+.|+|+++ .+..+.. ..+..+++|++|++++|. ++.+|. .+.
T Consensus 328 L~Ls~N~-l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~-------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 392 (455)
T 3v47_A 328 LNLSQNF-LGSIDSRMF-----ENLDKLEVLDLSYN-HIRALGD-------QSFLGLPNLKELALDTNQ-LKSVPDGIFD 392 (455)
T ss_dssp EECCSSC-CCEECGGGG-----TTCTTCCEEECCSS-CCCEECT-------TTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred EECCCCc-cCCcChhHh-----cCcccCCEEECCCC-cccccCh-------hhccccccccEEECCCCc-cccCCHhHhc
Confidence 9999997 555544332 57899999999998 4544422 224479999999999985 777776 457
Q ss_pred CCCCccEEEEcccccccccc
Q 002132 925 QTTTLKELRIWACELLGKHY 944 (961)
Q Consensus 925 ~l~~L~~L~l~~~~~l~~~~ 944 (961)
.+++|+.|++++|+.....+
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTT
T ss_pred cCCcccEEEccCCCcccCCC
Confidence 89999999999998766544
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=4.7e-24 Score=245.36 Aligned_cols=330 Identities=18% Similarity=0.211 Sum_probs=175.0
Q ss_pred cceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcccc
Q 002132 547 EKVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIE 626 (961)
Q Consensus 547 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 626 (961)
..++.+.+..+..... +.+..+++|+.|.+.++.... +++ +..+++|++|++++|. +..++. ++
T Consensus 46 ~~l~~L~l~~~~i~~l-~~~~~l~~L~~L~Ls~n~l~~------~~~--~~~l~~L~~L~l~~n~------l~~~~~-~~ 109 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTD------ITP--LKNLTKLVDILMNNNQ------IADITP-LA 109 (466)
T ss_dssp HTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCC------CGG--GTTCTTCCEEECCSSC------CCCCGG-GT
T ss_pred ccccEEecCCCCCccC-cchhhhcCCCEEECCCCccCC------chh--hhccccCCEEECCCCc------cccChh-hc
Confidence 3456666655544432 235556667777766665331 111 5666667777776666 555554 66
Q ss_pred ccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 627 KLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 627 ~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
++++|++|++++|.++.+|. +.++++|++|++++|. +..+|. +.++++|++|+++++ ...++. ++++++|+.|+
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~ 183 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLD 183 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEE
T ss_pred CCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEEE
Confidence 66677777776666666654 6666667777766665 444443 555555555555422 122221 44455555544
Q ss_pred ceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhh--------------hccccCCCCCCCeEEEEeecCC
Q 002132 707 EFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEA--------------KRLELDKKKYLSCLRLSFDEKE 772 (961)
Q Consensus 707 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~--------------~~~~l~~~~~L~~L~l~~~~~~ 772 (961)
...+.+... ..+..+++|+.|++.++...+..+ .... ....+..+++|+.|+++.|...
T Consensus 184 ----l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 184 ----ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp ----CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred ----CcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccc
Confidence 222322221 123344444444443333221100 0000 0012334555566665555433
Q ss_pred CCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeeccccc
Q 002132 773 QGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMR 852 (961)
Q Consensus 773 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 852 (961)
. ...+..+++|+.|++++|.+.. +|. +..+++|+.|+|++|.+.+ ++.++.+++|+.|++++|.
T Consensus 257 ~-------------~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 257 N-------------LAPLSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp C-------------CGGGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSC
T ss_pred c-------------chhhhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccC-chhhcCCCCCCEEECcCCc
Confidence 2 0114455666666666666655 433 5566666666666665543 3336666666666666665
Q ss_pred CceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEE
Q 002132 853 SVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKEL 932 (961)
Q Consensus 853 ~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L 932 (961)
+..++. +..+++|+.|+++++ .+...+ .+..+++|+.|++++|+ +..++. +..+++|+.|
T Consensus 321 -l~~~~~-------~~~l~~L~~L~l~~n-~l~~~~---------~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 380 (466)
T 1o6v_A 321 -ISDISP-------VSSLTKLQRLFFYNN-KVSDVS---------SLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQL 380 (466)
T ss_dssp -CSCCGG-------GGGCTTCCEEECCSS-CCCCCG---------GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEE
T ss_pred -CCCchh-------hccCccCCEeECCCC-ccCCch---------hhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEE
Confidence 222211 245677777777766 344332 13367778888887775 444433 5677788888
Q ss_pred EEccccccc
Q 002132 933 RIWACELLG 941 (961)
Q Consensus 933 ~l~~~~~l~ 941 (961)
++++|+...
T Consensus 381 ~l~~n~~~~ 389 (466)
T 1o6v_A 381 GLNDQAWTN 389 (466)
T ss_dssp ECCCEEEEC
T ss_pred eccCCcccC
Confidence 888776554
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2.1e-24 Score=257.82 Aligned_cols=251 Identities=16% Similarity=0.163 Sum_probs=146.6
Q ss_pred hhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhh
Q 002132 672 IGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAK 751 (961)
Q Consensus 672 i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~ 751 (961)
+..+++|++|++++|. +..+|..++.+++|++|+ ...+.+....+..+..+++|+.|++.++.....++.
T Consensus 274 ~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~----l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----- 343 (606)
T 3t6q_A 274 FHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLV----LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT----- 343 (606)
T ss_dssp TTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEE----CTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS-----
T ss_pred hccccCCCEEeccCCc-cCCCChhhcccccCCEEE----CccCCcCcCchhhhhccCcCCEEECCCCCcccccch-----
Confidence 4555666666666664 345666666666666665 444544444444556666666666655543322211
Q ss_pred ccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCC
Q 002132 752 RLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENC 831 (961)
Q Consensus 752 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~ 831 (961)
..+..+++|+.|+++.+...... .....+..+++|++|++++|.+....|..+..+++|+.|+|++|.+.
T Consensus 344 -~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 344 -GCLENLENLRELDLSHDDIETSD---------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp -STTTTCTTCCEEECCSSCCCEEE---------ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred -hhhhccCcCCEEECCCCcccccc---------CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 13556677777777766543200 00224556677777777777766544666667777777777777665
Q ss_pred CcCCC--CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceec
Q 002132 832 EQLPP--LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLT 909 (961)
Q Consensus 832 ~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~ 909 (961)
...+. ++.+++|+.|++++|. +...+... +..+++|+.|+++++. +...... .+..+..+++|+.|+
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----~~~l~~L~~L~L~~n~-l~~~~~~----~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSL-LDISSEQL-----FDGLPALQHLNLQGNH-FPKGNIQ----KTNSLQTLGRLEILV 482 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCC-CBTTCTTT-----TTTCTTCCEEECTTCB-CGGGEEC----SSCGGGGCTTCCEEE
T ss_pred CcccchhhhCcccCCEEECCCCc-cCCcCHHH-----HhCCCCCCEEECCCCC-CCccccc----cchhhccCCCccEEE
Confidence 44332 6677777777777765 32222111 1456777888877763 3221110 011234677788888
Q ss_pred ccccccCcCCCCCCCCCCCccEEEEcccccccccccCCCCcccc
Q 002132 910 IARCPKLKALPDHIHQTTTLKELRIWACELLGKHYRGGTEKTGL 953 (961)
Q Consensus 910 l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l 953 (961)
+++|......|..+..+++|+.|++++|......+.....++.|
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 87775333445666777788888888777666666555555555
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.3e-24 Score=240.09 Aligned_cols=305 Identities=17% Similarity=0.231 Sum_probs=214.2
Q ss_pred ccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccch
Q 002132 567 CRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPE 646 (961)
Q Consensus 567 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~ 646 (961)
..+++|++|.+.++.... ++. +..+++|++|++++|. +..+|. +..+++|++|++++|.++.+|
T Consensus 41 ~~l~~L~~L~l~~~~i~~-------~~~-~~~~~~L~~L~l~~n~------i~~~~~-~~~l~~L~~L~L~~n~i~~~~- 104 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-------IQG-IEYLTNLEYLNLNGNQ------ITDISP-LSNLVKLTNLYIGTNKITDIS- 104 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-------CTT-GGGCTTCCEEECCSSC------CCCCGG-GTTCTTCCEEECCSSCCCCCG-
T ss_pred hhcccccEEEEeCCcccc-------chh-hhhcCCccEEEccCCc------cccchh-hhcCCcCCEEEccCCcccCch-
Confidence 356677777777765431 122 5667788888888776 666665 777788888888887777765
Q ss_pred hhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCccccccc
Q 002132 647 TLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFES 726 (961)
Q Consensus 647 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~ 726 (961)
.+.++++|++|++++|. +..+|. +..+++|++|++++|.....++ .+..+++|++|+ ...+.+.... .+..
T Consensus 105 ~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~----l~~~~~~~~~--~~~~ 175 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT----VTESKVKDVT--PIAN 175 (347)
T ss_dssp GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEE----CCSSCCCCCG--GGGG
T ss_pred HHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEE----ecCCCcCCch--hhcc
Confidence 47778888888888777 556665 7777888888887775444433 367777777776 4444333322 2566
Q ss_pred ccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecC
Q 002132 727 LKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRG 806 (961)
Q Consensus 727 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 806 (961)
+++|+.|++.++..... . .+..+++|+.|+++.+..... ..+..+++|++|++++|.+
T Consensus 176 l~~L~~L~l~~n~l~~~----~-----~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDI----S-----PLASLTSLHYFTAYVNQITDI-------------TPVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp CTTCSEEECTTSCCCCC----G-----GGGGCTTCCEEECCSSCCCCC-------------GGGGGCTTCCEEECCSSCC
T ss_pred CCCCCEEEccCCccccc----c-----cccCCCccceeecccCCCCCC-------------chhhcCCcCCEEEccCCcc
Confidence 77777777766543221 1 155677888888887765431 1156678999999999998
Q ss_pred CCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccc
Q 002132 807 NTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEE 886 (961)
Q Consensus 807 ~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~ 886 (961)
.. +|. +..+++|+.|+|++|.+.. ++.+..+++|+.|++++|. +..++ .+..+++|+.|++++|. +..
T Consensus 234 ~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~L~~n~-l~~ 301 (347)
T 4fmz_A 234 TD-LSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDIS-------VLNNLSQLNSLFLNNNQ-LGN 301 (347)
T ss_dssp CC-CGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG-------GGGGCTTCSEEECCSSC-CCG
T ss_pred CC-Ccc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCCh-------hhcCCCCCCEEECcCCc-CCC
Confidence 87 655 7789999999999997654 5678899999999999986 44442 12578999999999984 433
Q ss_pred cccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEccccc
Q 002132 887 WDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACEL 939 (961)
Q Consensus 887 ~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~ 939 (961)
... ..+..+++|+.|++++|+ ++.++. +..+++|+.|++++|+.
T Consensus 302 ~~~-------~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 302 EDM-------EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGH-------HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC--
T ss_pred cCh-------hHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhcc
Confidence 221 123378999999999997 666655 67889999999999975
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=4.7e-24 Score=263.38 Aligned_cols=282 Identities=17% Similarity=0.167 Sum_probs=193.0
Q ss_pred cccceeEEEEEeccccc-cccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-C
Q 002132 545 LDEKVRHLMLIIGREAS-FRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-P 622 (961)
Q Consensus 545 ~~~~~r~lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p 622 (961)
.+..+++|.++.+.+.. .+..+..+++|++|.+.++.. ...+.+..|.++++|++|+|++|. +..+ |
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-----~~~i~~~~f~~L~~L~~L~Ls~N~------l~~~~p 90 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-----PLTIDKEAFRNLPNLRILDLGSSK------IYFLHP 90 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-----CCEECTTTTSSCTTCCEEECTTCC------CCEECT
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-----ccccCHHHhcCCCCCCEEECCCCc------CcccCH
Confidence 56789999999988765 356788999999999998842 224445668999999999999998 6665 8
Q ss_pred ccccccCccceEEecCCcccc-cchh--hhccCCCcEEeecCccccccc-chhhhcccCCceeecCCccccccccccCCC
Q 002132 623 RNIEKLVHLRYLNLSCQNIRK-LPET--LCELYNLEKLYITRCLYLEEL-PEGIGKLINMKHLLNYRTDSLRYMPVGIGR 698 (961)
Q Consensus 623 ~~i~~L~~Lr~L~L~~~~i~~-Lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 698 (961)
..++++.+|++|+|++|.++. +|.. +++|++|++|++++|...... +..+++|++|++|++++|......|..++.
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 889999999999999999885 5665 899999999999999844433 357899999999999999765556666666
Q ss_pred C--CCCCcCCceEeCCCCCcCCCcccccccccC------CCcCCccccccCCCCCCh-----------------------
Q 002132 699 L--TGLRTLDEFHVIGGGGVDGRKACWFESLKN------LKHLQVCGIRRLGDVSDV----------------------- 747 (961)
Q Consensus 699 L--~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~------L~~L~~~~~~~~~~~~~~----------------------- 747 (961)
+ ++|+.|. ...+.+....+..+..+.+ |+.|++.++......+..
T Consensus 171 l~~~~L~~L~----L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 171 LQGKTLSFFS----LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp HHHCSSCCCE----ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred ccCCccceEE----CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 6 6777776 4444444333333333332 555555544221111100
Q ss_pred --------------------------------hhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCC
Q 002132 748 --------------------------------GEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPD 795 (961)
Q Consensus 748 --------------------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 795 (961)
.......+..+++|+.|+++.|.... .....+..+++
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-----------~~~~~~~~l~~ 315 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-----------IADEAFYGLDN 315 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-----------ECTTTTTTCSS
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-----------CChHHhcCCCC
Confidence 00001123445566666666554431 11234566777
Q ss_pred CceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeeccccc
Q 002132 796 LKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 796 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 852 (961)
|++|++++|.+....|.++..+++|+.|+|++|.+....+. ++++++|+.|+|++|.
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 88888888777664466777788888888888766544443 6777888888887765
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2e-24 Score=256.22 Aligned_cols=308 Identities=18% Similarity=0.141 Sum_probs=243.8
Q ss_pred ccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCcccccc
Q 002132 567 CRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIRKLP 645 (961)
Q Consensus 567 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~Lp 645 (961)
..+.+++.+.+.++... .+++.+|..+++|++|+|++|. +..+| ..++.+++|++|+|++|.++.+|
T Consensus 48 l~l~~l~~l~l~~~~l~------~lp~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMR------KLPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGGCCCSEEEESSCEES------EECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCCCceEEEeeCCCCC------CcCHHHHccCCCCcEEECCCCC------CCCCChHHhcCCCCCCEEECCCCcCCCCC
Confidence 35678999999887532 4567778999999999999998 77765 48999999999999999999886
Q ss_pred hh-hhccCCCcEEeecCcccccccchh-hhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccc
Q 002132 646 ET-LCELYNLEKLYITRCLYLEELPEG-IGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACW 723 (961)
Q Consensus 646 ~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 723 (961)
.. ++++++|++|+|++|. +..+|.. ++++++|++|++++|......|..++.+++|++|+ ...+.+... .
T Consensus 116 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~----L~~N~l~~~---~ 187 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ----LSSNRLTHV---D 187 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE----CTTSCCSBC---C
T ss_pred HHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE----CcCCCCCCc---C
Confidence 64 6999999999999998 6678776 48999999999999976555566799999999998 566655433 3
Q ss_pred cccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEee
Q 002132 724 FESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRF 803 (961)
Q Consensus 724 l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 803 (961)
+..+++|+.|++.++... .+....+|+.|++++|..... ....+++|+.|++++
T Consensus 188 ~~~l~~L~~L~l~~n~l~------------~l~~~~~L~~L~ls~n~l~~~--------------~~~~~~~L~~L~L~~ 241 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLS------------TLAIPIAVEELDASHNSINVV--------------RGPVNVELTILKLQH 241 (597)
T ss_dssp GGGCTTCSEEECCSSCCS------------EEECCTTCSEEECCSSCCCEE--------------ECSCCSCCCEEECCS
T ss_pred hhhhhhhhhhhcccCccc------------cccCCchhheeeccCCccccc--------------ccccCCCCCEEECCC
Confidence 556777777777665432 223446799999988765421 112246899999999
Q ss_pred ecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccc
Q 002132 804 YRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSML 882 (961)
Q Consensus 804 ~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 882 (961)
|.+.. +.++..+++|+.|+|++|.+....|. ++.+++|+.|+|++|. +..++... ..+|+|+.|+|+++
T Consensus 242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------~~l~~L~~L~Ls~N- 311 (597)
T 3oja_B 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYG------QPIPTLKVLDLSHN- 311 (597)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSS------SCCTTCCEEECCSS-
T ss_pred CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccc------ccCCCCcEEECCCC-
Confidence 99887 67889999999999999998776664 8999999999999987 56654332 46899999999998
Q ss_pred cccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEccccccc
Q 002132 883 ELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLG 941 (961)
Q Consensus 883 ~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~ 941 (961)
.+..++... ..+++|+.|++++|+ +..+|. ..+++|+.|++++|+...
T Consensus 312 ~l~~i~~~~--------~~l~~L~~L~L~~N~-l~~~~~--~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 312 HLLHVERNQ--------PQFDRLENLYLDHNS-IVTLKL--STHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCCCGGGH--------HHHTTCSEEECCSSC-CCCCCC--CTTCCCSEEECCSSCEEH
T ss_pred CCCccCccc--------ccCCCCCEEECCCCC-CCCcCh--hhcCCCCEEEeeCCCCCC
Confidence 566555433 379999999999997 777763 678999999999998643
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=5.6e-24 Score=251.06 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=96.0
Q ss_pred CCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCc--CC-CCCCccccceeecccccCceE-eCCcccCCcc
Q 002132 791 QPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQ--LP-PLGKLQSLEKLSLTIMRSVKR-VGDECLGIEI 866 (961)
Q Consensus 791 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~--l~-~l~~l~~L~~L~L~~~~~l~~-~~~~~~~~~~ 866 (961)
..+++|++|++++|.+....|.++..+++|+.|+|++|.+... +| .++++++|+.|++++|. +.. ++...+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~---- 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTC---- 424 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCC----
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhh----
Confidence 5567888888888888776788888888888888888876542 22 37788888888888887 333 443322
Q ss_pred cCcCcccceeeccccccccccccccccccccccccc-cccceecccccccCcCCCCCCCCCCCccEEEEccccccccccc
Q 002132 867 IDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIM-PRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKHYR 945 (961)
Q Consensus 867 ~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~-p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~~~ 945 (961)
..+++|+.|+++++. +....+ ..+ ++|+.|++++| .++.+|..+..+++|+.|++++|... .++.
T Consensus 425 -~~l~~L~~L~l~~n~-l~~~~~----------~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 490 (562)
T 3a79_B 425 -AWAESILVLNLSSNM-LTGSVF----------RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK-SVPD 490 (562)
T ss_dssp -CCCTTCCEEECCSSC-CCGGGG----------SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC-CCCT
T ss_pred -cCcccCCEEECCCCC-CCcchh----------hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC-CCCH
Confidence 356777777777763 322111 123 46777777776 36667766666777777777776544 3443
Q ss_pred C-CCCcccceEEec
Q 002132 946 G-GTEKTGLKYHTF 958 (961)
Q Consensus 946 ~-~~~~~~l~~~~~ 958 (961)
. ...+++|+.+.+
T Consensus 491 ~~~~~l~~L~~L~l 504 (562)
T 3a79_B 491 GVFDRLTSLQYIWL 504 (562)
T ss_dssp TSTTTCTTCCCEEC
T ss_pred HHHhcCCCCCEEEe
Confidence 3 444555555443
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=6e-24 Score=257.44 Aligned_cols=381 Identities=15% Similarity=0.150 Sum_probs=234.3
Q ss_pred cccceeEEEEEeccccccc-cccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCc
Q 002132 545 LDEKVRHLMLIIGREASFR-VPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPR 623 (961)
Q Consensus 545 ~~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~ 623 (961)
.+.++++|.+..+.....+ ..+..+++|++|.+.++... .+.+..|.++++|++|+|++|. +..+|.
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~------l~~l~~ 90 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS------KLEPELCQKLPMLKVLNLQHNE------LSQLSD 90 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC------CCCTTHHHHCTTCCEEECCSSC------CCCCCT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC------ccCHHHHhcccCcCEEECCCCc------cCccCh
Confidence 4568999999988776543 35788999999999988653 2344568899999999999998 778886
Q ss_pred -cccccCccceEEecCCcccccc-hhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccC--CCC
Q 002132 624 -NIEKLVHLRYLNLSCQNIRKLP-ETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGI--GRL 699 (961)
Q Consensus 624 -~i~~L~~Lr~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i--~~L 699 (961)
.++++++|++|+|++|.++.+| ..++++++|++|++++|......|..++++++|++|++++|......|..+ ..+
T Consensus 91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 5899999999999999999886 568999999999999998656667778899999999999986433333333 345
Q ss_pred CCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCC-------------CC-------ChhhhhccccCCC-
Q 002132 700 TGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGD-------------VS-------DVGEAKRLELDKK- 758 (961)
Q Consensus 700 ~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~-------------~~-------~~~~~~~~~l~~~- 758 (961)
++|+.|+ ...+.+....+..+..+.+|+.|.+..+..... +. .........+..+
T Consensus 171 ~~L~~L~----L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 171 SSLKKLE----LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp CEESEEE----CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred ccccEEE----CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 7788877 555656555555566555555444322211000 00 0000000122222
Q ss_pred -CCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCC-----
Q 002132 759 -KYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCE----- 832 (961)
Q Consensus 759 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~----- 832 (961)
.+|+.|+++.|..... ....+..+++|++|++++|.+....|.++..+++|+.|+|++|....
T Consensus 247 ~~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 315 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVV-----------GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315 (680)
T ss_dssp GSCCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----
T ss_pred cCCCCEEECCCCCcCcc-----------CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc
Confidence 2366666666543310 12335556677777777776665445566666666666666554322
Q ss_pred cCC-----CCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccc-----------------cccccccc
Q 002132 833 QLP-----PLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSML-----------------ELEEWDYG 890 (961)
Q Consensus 833 ~l~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~-----------------~L~~~~~~ 890 (961)
.+| .++.+++|++|++++|. +..++...+ ..+++|+.|+++++. .++.+...
T Consensus 316 ~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~ 389 (680)
T 1ziw_A 316 SLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMF-----TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389 (680)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSCC-BCCCCTTTT-----TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred cccccChhhcccCCCCCEEECCCCc-cCCCChhHh-----ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence 222 35566666666666665 333322211 355666666666542 11111100
Q ss_pred ---cccccccccccccccceecccccccCcCCC-CCCCCCCCccEEEEcccccccccccCCCCcccceEEec
Q 002132 891 ---ITRTGNTVINIMPRLSSLTIARCPKLKALP-DHIHQTTTLKELRIWACELLGKHYRGGTEKTGLKYHTF 958 (961)
Q Consensus 891 ---~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~ 958 (961)
..+..+..+..+++|+.|++++|.....+| ..+..+++|+.|++++|.........+...++|+.+.+
T Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 001112234466777777777776444455 34566777777777777755444445555566665544
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=255.88 Aligned_cols=383 Identities=15% Similarity=0.091 Sum_probs=218.8
Q ss_pred ccceeEEEEEecccccc-ccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCc-
Q 002132 546 DEKVRHLMLIIGREASF-RVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPR- 623 (961)
Q Consensus 546 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~- 623 (961)
...+++|.+..+..... +..+..+++|++|.+.++... .+++..|..+++|++|++++|. +..+|.
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~------l~~l~~~ 118 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------SLALGAFSGLSSLQKLVAVETN------LASLENF 118 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTSC------CCCSTTC
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC------ccCHhhhcCccccccccccccc------cccCCCc
Confidence 45788999988876653 345788999999999998753 2344568899999999999998 777765
Q ss_pred cccccCccceEEecCCcccc--cchhhhccCCCcEEeecCcccccccchhhhcccCC----ceeecCCccccccccccCC
Q 002132 624 NIEKLVHLRYLNLSCQNIRK--LPETLCELYNLEKLYITRCLYLEELPEGIGKLINM----KHLLNYRTDSLRYMPVGIG 697 (961)
Q Consensus 624 ~i~~L~~Lr~L~L~~~~i~~--Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L----~~L~l~~~~~~~~~p~~i~ 697 (961)
.++++++|++|++++|.++. +|..++++++|++|++++|......|..++.+++| ++|++++|......|..+.
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhc
Confidence 68999999999999999985 79999999999999999998544456778888888 8889988864332232222
Q ss_pred CCCCCCcCCceEe------------------------------------------------------CCCCCcCCCcccc
Q 002132 698 RLTGLRTLDEFHV------------------------------------------------------IGGGGVDGRKACW 723 (961)
Q Consensus 698 ~L~~L~~L~~~~~------------------------------------------------------~~~~~~~~~~~~~ 723 (961)
. .+|+.|+.... .....+....+..
T Consensus 199 ~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~ 277 (570)
T 2z63_A 199 E-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277 (570)
T ss_dssp T-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT
T ss_pred c-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhh
Confidence 2 23333321000 0000111112233
Q ss_pred cccccCCCcCCccccccCCCCCC-hhhh------------hccccCCCCCCCeEEEEeecCCCCCcc-----------CC
Q 002132 724 FESLKNLKHLQVCGIRRLGDVSD-VGEA------------KRLELDKKKYLSCLRLSFDEKEQGGER-----------RK 779 (961)
Q Consensus 724 l~~L~~L~~L~~~~~~~~~~~~~-~~~~------------~~~~l~~~~~L~~L~l~~~~~~~~~~~-----------~~ 779 (961)
+..+++|+.|++.++.... ++. .... .......+.+|+.|++..+........ ..
T Consensus 278 ~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~ 356 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356 (570)
T ss_dssp TGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCS
T ss_pred hcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcC
Confidence 4455555555554443321 111 0000 000001233444444443322110000 00
Q ss_pred cch--HHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCC--CCCCccccceeecccccCce
Q 002132 780 NED--DQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLP--PLGKLQSLEKLSLTIMRSVK 855 (961)
Q Consensus 780 ~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~ 855 (961)
+.. .......+..+++|++|++++|.+.. +|..+..+++|+.|++++|.+....+ .++++++|++|++++|. +.
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~ 434 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TR 434 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CE
T ss_pred CccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-cc
Confidence 000 00001223345566666666666555 44445666777777777766554443 36677777777777765 33
Q ss_pred EeCCcccCCcccCcCcccceeecccccccc--ccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEE
Q 002132 856 RVGDECLGIEIIDAFPKLKSLTISSMLELE--EWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELR 933 (961)
Q Consensus 856 ~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~--~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~ 933 (961)
...... +..+++|+.|+++++. +. .++. .+..+++|+.|++++|......|..+.++++|+.|+
T Consensus 435 ~~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~p~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 435 VAFNGI-----FNGLSSLEVLKMAGNS-FQENFLPD--------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp ECCTTT-----TTTCTTCCEEECTTCE-EGGGEECS--------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccchhh-----hhcCCcCcEEECcCCc-Cccccchh--------hhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 322211 1456677777777663 22 1221 133566666666666653333355566666666666
Q ss_pred EcccccccccccCCCCcccceEEec
Q 002132 934 IWACELLGKHYRGGTEKTGLKYHTF 958 (961)
Q Consensus 934 l~~~~~l~~~~~~~~~~~~l~~~~~ 958 (961)
+++|......+..+..+++|+.+.+
T Consensus 501 l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 501 MASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcCCCCCHHHhhcccCCcEEEe
Confidence 6666544433334445555555544
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=252.43 Aligned_cols=346 Identities=17% Similarity=0.150 Sum_probs=236.6
Q ss_pred ccceeEEEEEecccccc-ccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccc--cC
Q 002132 546 DEKVRHLMLIIGREASF-RVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLK--IP 622 (961)
Q Consensus 546 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~--lp 622 (961)
...+++|.+..+..... +..+..+++|++|.++++.+. .++.. .+++|++|+|++|. +.. +|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------~lp~~---~l~~L~~L~L~~N~------l~~~~~p 108 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV------KISCH---PTVNLKHLDLSFNA------FDALPIC 108 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC------EEECC---CCCCCSEEECCSSC------CSSCCCC
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee------ecCcc---ccCCccEEeccCCc------cccccch
Confidence 45789999999887764 567889999999999998754 22222 78999999999998 665 57
Q ss_pred ccccccCccceEEecCCcccccchhhhccCCC--cEEeecCccc--ccccchhhhc------------------------
Q 002132 623 RNIEKLVHLRYLNLSCQNIRKLPETLCELYNL--EKLYITRCLY--LEELPEGIGK------------------------ 674 (961)
Q Consensus 623 ~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L--~~L~L~~~~~--l~~lp~~i~~------------------------ 674 (961)
..++++++|++|++++|.++. ..+..+.+| ++|++++|.. ....|..+..
T Consensus 109 ~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~ 186 (520)
T 2z7x_B 109 KEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186 (520)
T ss_dssp GGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCC
T ss_pred hhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhh
Confidence 899999999999999999886 457888888 9999999985 3455555544
Q ss_pred --ccCCceeecCCcc-------ccccccccCCCCCCCCcCCceEe-----------------------CCCCCcCCCccc
Q 002132 675 --LINMKHLLNYRTD-------SLRYMPVGIGRLTGLRTLDEFHV-----------------------IGGGGVDGRKAC 722 (961)
Q Consensus 675 --L~~L~~L~l~~~~-------~~~~~p~~i~~L~~L~~L~~~~~-----------------------~~~~~~~~~~~~ 722 (961)
+++|+.|++++|. ....+| .++.+++|+.|..... ...+.+.+..+.
T Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 265 (520)
T 2z7x_B 187 KTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF 265 (520)
T ss_dssp TTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred hcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence 4455555555542 111111 2333333333321110 111111112222
Q ss_pred cc-----ccccCCCcCCccccccCCCCCC--hhhh----------------hccc-cCCCCCCCeEEEEeecCCCCCccC
Q 002132 723 WF-----ESLKNLKHLQVCGIRRLGDVSD--VGEA----------------KRLE-LDKKKYLSCLRLSFDEKEQGGERR 778 (961)
Q Consensus 723 ~l-----~~L~~L~~L~~~~~~~~~~~~~--~~~~----------------~~~~-l~~~~~L~~L~l~~~~~~~~~~~~ 778 (961)
.+ ..+++|+.+++..+.. .++. .... .... ...+++|+.|+++.|....
T Consensus 266 ~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~----- 338 (520)
T 2z7x_B 266 RDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD----- 338 (520)
T ss_dssp CCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT-----
T ss_pred chhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccCh-----
Confidence 22 3344444333333222 1110 0000 0001 1567888899998876542
Q ss_pred CcchHHHHHhhCCCCCCCceEEEeeecCCC--CCCCccccccCccEEEEeCCCCCCcCCC--CCCccccceeecccccCc
Q 002132 779 KNEDDQLLLEALQPPPDLKELEIRFYRGNT--VFPNWLMSLTNLRSLVLYGCENCEQLPP--LGKLQSLEKLSLTIMRSV 854 (961)
Q Consensus 779 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l 854 (961)
..+..+..+++|+.|++++|.+.. .+|.++..+++|+.|+|++|.+...+|. +..+++|+.|++++|...
T Consensus 339 ------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 339 ------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp ------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred ------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 234567888999999999999885 2456788999999999999998875553 788999999999998732
Q ss_pred eEeCCcccCCcccCcC-cccceeeccccccccccccccccccccccccccccceecccccccCcCCCCC-CCCCCCccEE
Q 002132 855 KRVGDECLGIEIIDAF-PKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDH-IHQTTTLKEL 932 (961)
Q Consensus 855 ~~~~~~~~~~~~~~~f-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~-~~~l~~L~~L 932 (961)
..++ ..+ ++|+.|+++++ .++.++.... .+++|++|++++|. ++.+|.. +..+++|+.|
T Consensus 413 ~~~~---------~~l~~~L~~L~Ls~N-~l~~ip~~~~--------~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 413 DTIF---------RCLPPRIKVLDLHSN-KIKSIPKQVV--------KLEALQELNVASNQ-LKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp GGGG---------GSCCTTCCEEECCSS-CCCCCCGGGG--------GCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred cchh---------hhhcccCCEEECCCC-cccccchhhh--------cCCCCCEEECCCCc-CCccCHHHhccCCcccEE
Confidence 2111 233 69999999998 5666655433 79999999999995 8889986 7889999999
Q ss_pred EEccccccc
Q 002132 933 RIWACELLG 941 (961)
Q Consensus 933 ~l~~~~~l~ 941 (961)
++++|+...
T Consensus 474 ~l~~N~~~c 482 (520)
T 2z7x_B 474 WLHTNPWDC 482 (520)
T ss_dssp ECCSSCBCC
T ss_pred ECcCCCCcc
Confidence 999998754
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.1e-23 Score=242.23 Aligned_cols=352 Identities=16% Similarity=0.110 Sum_probs=256.2
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccc-cc-CccccccCccceEEecCCccccc-ch
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTL-KI-PRNIEKLVHLRYLNLSCQNIRKL-PE 646 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~-~l-p~~i~~L~~Lr~L~L~~~~i~~L-p~ 646 (961)
++|+.|.++++.+. .+.+..|..+++|++|+|++|. +. .+ |..+.++++|++|+|++|.++.+ |.
T Consensus 30 ~~l~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~n~------~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 30 AHVNYVDLSLNSIA------ELNETSFSRLQDLQFLKVEQQT------PGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp TTCCEEECCSSCCC------EECTTTTSSCTTCCEEECCCCS------TTCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred CccCEEEecCCccC------cCChhHhccCccccEEECcCCc------ccceECcccccccccCCEEeCCCCccCccChh
Confidence 78999999998753 2334558899999999999997 43 44 56789999999999999999876 78
Q ss_pred hhhccCCCcEEeecCcccccccchh--hhcccCCceeecCCcccccccccc-CCCCCCCCcCCceEeCCCCCcCCCcccc
Q 002132 647 TLCELYNLEKLYITRCLYLEELPEG--IGKLINMKHLLNYRTDSLRYMPVG-IGRLTGLRTLDEFHVIGGGGVDGRKACW 723 (961)
Q Consensus 647 ~i~~L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 723 (961)
.++++++|++|++++|.....+|.. +.++++|++|++++|......|.. ++++++|++|+ ...+.+....+..
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~----L~~n~l~~~~~~~ 173 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD----LTFNKVKSICEED 173 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE----CTTCCBSCCCTTT
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe----CCCCcccccChhh
Confidence 8999999999999999854455655 889999999999999755545655 78999999998 6677666665656
Q ss_pred cccc--cCCCcCCccccccCCCCCC-hhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEE
Q 002132 724 FESL--KNLKHLQVCGIRRLGDVSD-VGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELE 800 (961)
Q Consensus 724 l~~L--~~L~~L~~~~~~~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 800 (961)
+..+ .+|+.|++.++......+. ........+..+.+|+.|++++|.... .....+. .....++|+.|+
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------~~~~~~~-~~~~~~~L~~L~ 245 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-------SMAKRFF-DAIAGTKIQSLI 245 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-------HHHHHHH-HHTTTCCEEEEE
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-------cchhhhh-ccccccceeeEe
Confidence 6555 5667777766655432211 111111234466789999998876541 1112222 223357899999
Q ss_pred EeeecCCCCC----------CCccc--cccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCCccc
Q 002132 801 IRFYRGNTVF----------PNWLM--SLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEII 867 (961)
Q Consensus 801 l~~~~~~~~l----------p~~~~--~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 867 (961)
+++|...... +..+. ..++|+.|+|++|.+....|. ++.+++|+.|+|++|. +..++...+
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~----- 319 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAF----- 319 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTT-----
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHh-----
Confidence 9987543310 11122 347999999999998877665 8999999999999998 555543322
Q ss_pred CcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEcccccccccccCC
Q 002132 868 DAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKHYRGG 947 (961)
Q Consensus 868 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~ 947 (961)
..+++|+.|+++++ .+..+.. ..+..+++|++|++++|..-...|..+..+++|+.|++++|....-.....
T Consensus 320 ~~l~~L~~L~Ls~N-~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 320 WGLTHLLKLNLSQN-FLGSIDS-------RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp TTCTTCCEEECCSS-CCCEECG-------GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cCcccCCEEECCCC-ccCCcCh-------hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 57899999999998 4544432 123479999999999997444457788899999999999998765444445
Q ss_pred CCcccceEEecc
Q 002132 948 TEKTGLKYHTFP 959 (961)
Q Consensus 948 ~~~~~l~~~~~p 959 (961)
..+++|+.+.+.
T Consensus 392 ~~l~~L~~L~l~ 403 (455)
T 3v47_A 392 DRLTSLQKIWLH 403 (455)
T ss_dssp TTCTTCCEEECC
T ss_pred ccCCcccEEEcc
Confidence 677888877654
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=242.65 Aligned_cols=296 Identities=19% Similarity=0.168 Sum_probs=172.7
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCcccccchh-
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKLPET- 647 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~Lp~~- 647 (961)
++++.|.+.++.+. .+.+..|..+++|++|+|++|. +..+ |..+.++++|++|+|++|.++.+|..
T Consensus 32 ~~l~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 99 (477)
T 2id5_A 32 TETRLLDLGKNRIK------TLNQDEFASFPHLEELELNENI------VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99 (477)
T ss_dssp TTCSEEECCSSCCC------EECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred CCCcEEECCCCccc------eECHhHccCCCCCCEEECCCCc------cCEeChhhhhCCccCCEEECCCCcCCccCccc
Confidence 57788888877643 2233457788888888888887 6555 66788888888888888888888764
Q ss_pred hhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccc
Q 002132 648 LCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESL 727 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L 727 (961)
+.++++|++|+|++|......|..+.++++|++|++++|......|..+..+++|++|+ ...+.+....+..+..+
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT----LEKCNLTSIPTEALSHL 175 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE----EESCCCSSCCHHHHTTC
T ss_pred ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE----CCCCcCcccChhHhccc
Confidence 67888888888888875555566778888888888888865444455677777777776 44444443333445556
Q ss_pred cCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCC
Q 002132 728 KNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGN 807 (961)
Q Consensus 728 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 807 (961)
++|+.|++.++......+ ..+..+.+|+.|+++.+..... +........+|++|++++|.+.
T Consensus 176 ~~L~~L~l~~n~i~~~~~-------~~~~~l~~L~~L~l~~~~~~~~-----------~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRD-------YSFKRLYRLKVLEISHWPYLDT-----------MTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp TTCCEEEEESCCCCEECT-------TCSCSCTTCCEEEEECCTTCCE-----------ECTTTTTTCCCSEEEEESSCCC
T ss_pred CCCcEEeCCCCcCcEeCh-------hhcccCcccceeeCCCCccccc-----------cCcccccCccccEEECcCCccc
Confidence 666666555443322111 1344555666666655432210 0111112235666666666555
Q ss_pred CCCC-CccccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCCcccCcCcccceeecccccccc
Q 002132 808 TVFP-NWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELE 885 (961)
Q Consensus 808 ~~lp-~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~ 885 (961)
. +| ..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|. +..++...+ ..+++|+.|+|+++ .++
T Consensus 238 ~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-----~~l~~L~~L~L~~N-~l~ 309 (477)
T 2id5_A 238 A-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAF-----RGLNYLRVLNVSGN-QLT 309 (477)
T ss_dssp S-CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTB-----TTCTTCCEEECCSS-CCS
T ss_pred c-cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHh-----cCcccCCEEECCCC-cCc
Confidence 4 44 2344556666666666654433332 5556666666666554 333322211 34556666666555 333
Q ss_pred ccccccccccccccccccccceecccccc
Q 002132 886 EWDYGITRTGNTVINIMPRLSSLTIARCP 914 (961)
Q Consensus 886 ~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 914 (961)
.++.. .+..+++|+.|++.+|+
T Consensus 310 ~~~~~-------~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 310 TLEES-------VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCCGG-------GBSCGGGCCEEECCSSC
T ss_pred eeCHh-------HcCCCcccCEEEccCCC
Confidence 33221 12245566666665554
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=6.1e-23 Score=233.83 Aligned_cols=305 Identities=18% Similarity=0.130 Sum_probs=199.4
Q ss_pred ccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccccc
Q 002132 565 PICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKL 644 (961)
Q Consensus 565 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~L 644 (961)
.+..+++|++|.+.++.+.. + + .+..+++|++|+|++|. +..+| ++.+++|++|++++|.++.+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~------~-~-~l~~l~~L~~L~Ls~n~------l~~~~--~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD------M-T-GIEKLTGLTKLICTSNN------ITTLD--LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC------C-T-TGGGCTTCSEEECCSSC------CSCCC--CTTCTTCSEEECCSSCCSCC
T ss_pred ChhHcCCCCEEEccCCCccc------C-h-hhcccCCCCEEEccCCc------CCeEc--cccCCCCCEEECcCCCCcee
Confidence 34567778888887775431 1 2 26777888888888887 66665 77788888888888888777
Q ss_pred chhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCccccc
Q 002132 645 PETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWF 724 (961)
Q Consensus 645 p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l 724 (961)
| ++++++|++|++++|. +..+| ++.+++|++|++++|. +..++ ++.+++|+.|+ ...+...+.. .+
T Consensus 101 ~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~----l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELD----CHLNKKITKL--DV 166 (457)
T ss_dssp C--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEE----CTTCSCCCCC--CC
T ss_pred e--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEE----CCCCCccccc--cc
Confidence 5 7778888888888876 55565 7778888888888775 33343 66777777776 4444222221 35
Q ss_pred ccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeee
Q 002132 725 ESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFY 804 (961)
Q Consensus 725 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 804 (961)
..+++|+.|++.++...+ + .+..+++|+.|+++.|..... .+..+++|+.|++++|
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l---------~l~~l~~L~~L~l~~N~l~~~--------------~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-L---------DVSQNKLLNRLNCDTNNITKL--------------DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-C---------CCTTCTTCCEEECCSSCCSCC--------------CCTTCTTCSEEECCSS
T ss_pred ccCCcCCEEECCCCccce-e---------ccccCCCCCEEECcCCcCCee--------------ccccCCCCCEEECcCC
Confidence 566777777776654432 1 145667788888877765420 2566778888888888
Q ss_pred cCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCcccccee----------ecccccCceEeCCcccCCcccCcCcccc
Q 002132 805 RGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKL----------SLTIMRSVKRVGDECLGIEIIDAFPKLK 874 (961)
Q Consensus 805 ~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L----------~L~~~~~l~~~~~~~~~~~~~~~f~~L~ 874 (961)
.+.. +| +..+++|+.|++++|.+.+.. ++.+++|+.| ++++|..+..++ .+.+++|+
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--------~~~l~~L~ 289 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--------AEGCRKIK 289 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--------CTTCTTCC
T ss_pred cccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--------ccccccCC
Confidence 8877 66 667888888888888765532 3444544444 444443333222 14678888
Q ss_pred eeeccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEccccc
Q 002132 875 SLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACEL 939 (961)
Q Consensus 875 ~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~ 939 (961)
.|++++|..+..++..........+..+|+|+.|++++|. ++.+| +.++++|+.|++++|..
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSCC
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCCC
Confidence 8888888766666543222222234466777777777774 66664 56788888888887764
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.8e-23 Score=231.00 Aligned_cols=302 Identities=20% Similarity=0.261 Sum_probs=235.8
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcc
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKL 675 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 675 (961)
+..++.|++|+++++. +..+|. +..+++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+.++
T Consensus 40 ~~~l~~L~~L~l~~~~------i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l 109 (347)
T 4fmz_A 40 QEELESITKLVVAGEK------VASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNL 109 (347)
T ss_dssp HHHHTTCSEEECCSSC------CCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTC
T ss_pred chhcccccEEEEeCCc------cccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCC
Confidence 4568899999999998 777764 8899999999999999999988 9999999999999997 67776 59999
Q ss_pred cCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhcccc
Q 002132 676 INMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLEL 755 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l 755 (961)
++|++|++++|. +..+|. +..+++|++|+ ...+..... ...+..+++|+.|++.++...... .+
T Consensus 110 ~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~----l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---------~~ 173 (347)
T 4fmz_A 110 TNLRELYLNEDN-ISDISP-LANLTKMYSLN----LGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVT---------PI 173 (347)
T ss_dssp TTCSEEECTTSC-CCCCGG-GTTCTTCCEEE----CTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCG---------GG
T ss_pred CcCCEEECcCCc-ccCchh-hccCCceeEEE----CCCCCCccc-ccchhhCCCCcEEEecCCCcCCch---------hh
Confidence 999999999996 455555 88888898887 444433222 234777788888887766543221 26
Q ss_pred CCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCC
Q 002132 756 DKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLP 835 (961)
Q Consensus 756 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~ 835 (961)
..+++|+.|++++|.... ...+..+++|+.|++++|.+.. ++. +..+++|+.|+|++|.+.. ++
T Consensus 174 ~~l~~L~~L~l~~n~l~~-------------~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~l~~-~~ 237 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIED-------------ISPLASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNKITD-LS 237 (347)
T ss_dssp GGCTTCSEEECTTSCCCC-------------CGGGGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CG
T ss_pred ccCCCCCEEEccCCcccc-------------cccccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCccCC-Cc
Confidence 678999999999887653 1126678899999999999887 444 7789999999999998755 44
Q ss_pred CCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceeccccccc
Q 002132 836 PLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPK 915 (961)
Q Consensus 836 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 915 (961)
.++.+++|+.|++++|. +..++ .+..+++|+.|+++++ .+..++. +..+++|+.|++++|+.
T Consensus 238 ~~~~l~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~l~~n-~l~~~~~---------~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 238 PLANLSQLTWLEIGTNQ-ISDIN-------AVKDLTKLKMLNVGSN-QISDISV---------LNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp GGTTCTTCCEEECCSSC-CCCCG-------GGTTCTTCCEEECCSS-CCCCCGG---------GGGCTTCSEEECCSSCC
T ss_pred chhcCCCCCEEECCCCc-cCCCh-------hHhcCCCcCEEEccCC-ccCCChh---------hcCCCCCCEEECcCCcC
Confidence 48999999999999986 44432 2368899999999998 5666542 33799999999999975
Q ss_pred CcCCCCCCCCCCCccEEEEcccccccccccCCCCcccceEEecc
Q 002132 916 LKALPDHIHQTTTLKELRIWACELLGKHYRGGTEKTGLKYHTFP 959 (961)
Q Consensus 916 L~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~p 959 (961)
....|..+..+++|+.|++++|+.....+ ....++|+.+.+.
T Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp CGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 44555667789999999999999655433 5566777776654
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=250.36 Aligned_cols=274 Identities=16% Similarity=0.118 Sum_probs=187.2
Q ss_pred cccceeEEEEEeccccc--cccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccc-c
Q 002132 545 LDEKVRHLMLIIGREAS--FRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLK-I 621 (961)
Q Consensus 545 ~~~~~r~lsl~~~~~~~--~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~-l 621 (961)
....++.|.+..+.... .+..+..+++|++|.+.++.+. .+.+..|.++++|++|+|++|. +.. +
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~------~~~p~~~~~l~~L~~L~Ls~n~------l~~~~ 113 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY------FLHPDAFQGLFHLFELRLYFCG------LSDAV 113 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC------EECTTSSCSCSSCCCEECTTCC------CSSCC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc------ccCHhHccCCcccCEeeCcCCC------CCccc
Confidence 34578899998874332 2566889999999999998754 2345568899999999999998 544 4
Q ss_pred Ccc--ccccCccceEEecCCccccc--chhhhccCCCcEEeecCcccccccchhhhcc--cCCceeecCCcccccccccc
Q 002132 622 PRN--IEKLVHLRYLNLSCQNIRKL--PETLCELYNLEKLYITRCLYLEELPEGIGKL--INMKHLLNYRTDSLRYMPVG 695 (961)
Q Consensus 622 p~~--i~~L~~Lr~L~L~~~~i~~L--p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L--~~L~~L~l~~~~~~~~~p~~ 695 (961)
|.. ++++++|++|+|++|.++.+ +..++++++|++|++++|......|..+..+ ++|+.|++++|......|..
T Consensus 114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~ 193 (844)
T 3j0a_A 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193 (844)
T ss_dssp STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC
T ss_pred ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc
Confidence 554 89999999999999999866 3579999999999999998666667778777 78888888887665555555
Q ss_pred CCCCCC------CCcCCceEe----------------------------------------------------------C
Q 002132 696 IGRLTG------LRTLDEFHV----------------------------------------------------------I 711 (961)
Q Consensus 696 i~~L~~------L~~L~~~~~----------------------------------------------------------~ 711 (961)
++.+.+ |+.|+.... .
T Consensus 194 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~L 273 (844)
T 3j0a_A 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273 (844)
T ss_dssp CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEEC
T ss_pred hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEEC
Confidence 554443 554442110 1
Q ss_pred CCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCC
Q 002132 712 GGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQ 791 (961)
Q Consensus 712 ~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 791 (961)
..+.+....+..+..+++|+.|++.++...... ...+..+++|+.|+++.|..... ....+.
T Consensus 274 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~ 335 (844)
T 3j0a_A 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-------DEAFYGLDNLQVLNLSYNLLGEL-----------YSSNFY 335 (844)
T ss_dssp TTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-------TTTTTTCSSCCEEEEESCCCSCC-----------CSCSCS
T ss_pred CCCcccccChhhhhcCCCCCEEECCCCcCCCCC-------hHHhcCCCCCCEEECCCCCCCcc-----------CHHHhc
Confidence 111111111223344444444444444332211 12467789999999999876431 134577
Q ss_pred CCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeeccccc
Q 002132 792 PPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMR 852 (961)
Q Consensus 792 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 852 (961)
.+++|+.|++++|.+....+..+..+++|+.|+|++|.+.. +..+++|+.|.+++|.
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----i~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----IHFIPSIPDIFLSGNK 392 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC----CSSCCSCSEEEEESCC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc----ccCCCCcchhccCCCC
Confidence 88999999999999888445568899999999999997643 2224444444444443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=7.2e-23 Score=235.44 Aligned_cols=307 Identities=19% Similarity=0.272 Sum_probs=211.5
Q ss_pred ccceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccc
Q 002132 546 DEKVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNI 625 (961)
Q Consensus 546 ~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i 625 (961)
...+++|.+..+.....+. +..+++|+.|.+.++.... .++ +..+++|++|++++|. +..+|. +
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------~~~--~~~l~~L~~L~L~~n~------l~~~~~-~ 130 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD------ITP--LANLTNLTGLTLFNNQ------ITDIDP-L 130 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC------CGG--GTTCTTCCEEECCSSC------CCCCGG-G
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCcccc------Chh--hcCCCCCCEEECCCCC------CCCChH-H
Confidence 4567888887776665443 7778888888888776432 122 6778888888888887 666654 7
Q ss_pred cccCccceEEecCCcccccch--------------------hhhccCCCcEEeecCcccccccchhhhcccCCceeecCC
Q 002132 626 EKLVHLRYLNLSCQNIRKLPE--------------------TLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYR 685 (961)
Q Consensus 626 ~~L~~Lr~L~L~~~~i~~Lp~--------------------~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 685 (961)
.++++|++|++++|.+..+|. .+.++++|++|++++|. +..++. +.++++|++|++++
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATN 208 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCS
T ss_pred cCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecC
Confidence 778888888888777766553 14455566666666665 444443 56666666666666
Q ss_pred ccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEE
Q 002132 686 TDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLR 765 (961)
Q Consensus 686 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 765 (961)
|... .++. ++.+++|++|+ ...+.+... ..+..+++|+.|++.++...... .+..+++|+.|+
T Consensus 209 n~l~-~~~~-~~~l~~L~~L~----l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~---------~~~~l~~L~~L~ 271 (466)
T 1o6v_A 209 NQIS-DITP-LGILTNLDELS----LNGNQLKDI--GTLASLTNLTDLDLANNQISNLA---------PLSGLTKLTELK 271 (466)
T ss_dssp SCCC-CCGG-GGGCTTCCEEE----CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG---------GGTTCTTCSEEE
T ss_pred Cccc-cccc-ccccCCCCEEE----CCCCCcccc--hhhhcCCCCCEEECCCCccccch---------hhhcCCCCCEEE
Confidence 6432 2222 55566666665 344433332 24556667777776665443221 266789999999
Q ss_pred EEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccce
Q 002132 766 LSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEK 845 (961)
Q Consensus 766 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 845 (961)
+++|..... ..+..+++|+.|++++|.+.. ++. +..+++|+.|+|++|.+.+..| ++.+++|+.
T Consensus 272 l~~n~l~~~-------------~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 335 (466)
T 1o6v_A 272 LGANQISNI-------------SPLAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 335 (466)
T ss_dssp CCSSCCCCC-------------GGGTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCE
T ss_pred CCCCccCcc-------------ccccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCE
Confidence 998876531 126678999999999999887 554 7789999999999998766544 889999999
Q ss_pred eecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCCCC
Q 002132 846 LSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDH 922 (961)
Q Consensus 846 L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~ 922 (961)
|++++|. +..++ .+..+++|+.|++++| .+..+.. ...+++|+.|++.+|+ +..+|..
T Consensus 336 L~l~~n~-l~~~~-------~l~~l~~L~~L~l~~n-~l~~~~~---------~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 336 LFFYNNK-VSDVS-------SLANLTNINWLSAGHN-QISDLTP---------LANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp EECCSSC-CCCCG-------GGTTCTTCCEEECCSS-CCCBCGG---------GTTCTTCCEEECCCEE-EECCCBC
T ss_pred eECCCCc-cCCch-------hhccCCCCCEEeCCCC-ccCccch---------hhcCCCCCEEeccCCc-ccCCchh
Confidence 9999986 44432 2367899999999998 4555443 3379999999999997 5556643
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.7e-23 Score=235.10 Aligned_cols=301 Identities=18% Similarity=0.178 Sum_probs=239.9
Q ss_pred cCCceeEEecCCCCCCCCccccccCcc-ccccCccceEEecCCcccccch-hhhccCCCcEEeecCcccccccchhhhcc
Q 002132 598 ESTSLRALDFWGSYDVSPFWTLKIPRN-IEKLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLEELPEGIGKL 675 (961)
Q Consensus 598 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 675 (961)
.+++|++|+++++. +..+|.. +..+++|++|+|++|.++.+|. .+.++++|++|++++|......|..+.++
T Consensus 43 ~l~~l~~l~l~~~~------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNST------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GGCCCSEEEEESCE------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCceEEEecCCc------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 46899999999998 8889876 5889999999999999998865 79999999999999998444445668999
Q ss_pred cCCceeecCCcccccccccc-CCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccc
Q 002132 676 INMKHLLNYRTDSLRYMPVG-IGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLE 754 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 754 (961)
++|++|++++|. +..+|.. ++.+++|++|+ ...+.+....+..+..+++|+.|++.++..... .
T Consensus 117 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~----L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~ 181 (390)
T 3o6n_A 117 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLS----MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------D 181 (390)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE----CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----------C
T ss_pred CCCCEEECCCCc-cCcCCHHHhcCCCCCcEEE----CCCCccCccChhhccCCCCCCEEECCCCcCCcc----------c
Confidence 999999999996 5677776 58899999998 667767666666788889999998877755332 2
Q ss_pred cCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcC
Q 002132 755 LDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQL 834 (961)
Q Consensus 755 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 834 (961)
+..+++|+.|+++++... .+..+++|+.|++++|.+.. +|... +++|+.|+|++|.+.+ .
T Consensus 182 ~~~l~~L~~L~l~~n~l~----------------~~~~~~~L~~L~l~~n~l~~-~~~~~--~~~L~~L~l~~n~l~~-~ 241 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD-T 241 (390)
T ss_dssp GGGCTTCSEEECCSSCCS----------------EEECCSSCSEEECCSSCCCE-EECCC--CSSCCEEECCSSCCCC-C
T ss_pred cccccccceeeccccccc----------------ccCCCCcceEEECCCCeeee-ccccc--cccccEEECCCCCCcc-c
Confidence 456788999999887643 34556799999999999877 65543 5899999999998764 4
Q ss_pred CCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccc
Q 002132 835 PPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCP 914 (961)
Q Consensus 835 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 914 (961)
+.++.+++|+.|++++|. +..+....+ ..+++|+.|+++++ .+..++.... .+|+|+.|++++|.
T Consensus 242 ~~l~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~~--------~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNE-LEKIMYHPF-----VKMQRLERLYISNN-RLVALNLYGQ--------PIPTLKVLDLSHNH 306 (390)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEESGGG-----TTCSSCCEEECCSS-CCCEEECSSS--------CCTTCCEEECCSSC
T ss_pred HHHcCCCCccEEECCCCc-CCCcChhHc-----cccccCCEEECCCC-cCcccCcccC--------CCCCCCEEECCCCc
Confidence 678999999999999997 444432222 57899999999998 5666654433 79999999999995
Q ss_pred cCcCCCCCCCCCCCccEEEEcccccccccccCCCCcccceEEec
Q 002132 915 KLKALPDHIHQTTTLKELRIWACELLGKHYRGGTEKTGLKYHTF 958 (961)
Q Consensus 915 ~L~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~ 958 (961)
++.+|..+..+++|+.|++++|+..... ....++|+.+.+
T Consensus 307 -l~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l 346 (390)
T 3o6n_A 307 -LLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 346 (390)
T ss_dssp -CCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred -ceecCccccccCcCCEEECCCCccceeC---chhhccCCEEEc
Confidence 8889887788999999999999865432 344556666554
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=7.4e-23 Score=222.99 Aligned_cols=233 Identities=21% Similarity=0.277 Sum_probs=183.4
Q ss_pred cCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 598 ESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 598 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
....+++|+|++|. +..+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..++++++
T Consensus 79 ~~~~l~~L~L~~n~------l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 79 TQPGRVALELRSVP------LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNR 151 (328)
T ss_dssp TSTTCCEEEEESSC------CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTT
T ss_pred cccceeEEEccCCC------chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcC
Confidence 46889999999998 8899999999999999999999999999999999999999999998 6689999999999
Q ss_pred CceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCC
Q 002132 678 MKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDK 757 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~ 757 (961)
|++|++++|.....+|..++... . .
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~----------------------------------~---------~------------ 176 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTD----------------------------------A---------S------------ 176 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC--------------------------------------------C------------
T ss_pred CCEEECCCCCCccccChhHhhcc----------------------------------c---------h------------
Confidence 99999999876665554332100 0 0
Q ss_pred CCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCC
Q 002132 758 KKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPL 837 (961)
Q Consensus 758 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l 837 (961)
..+..+++|++|++++|.+.. +|.++..+++|+.|+|++|.+....+.+
T Consensus 177 ------------------------------~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~l 225 (328)
T 4fcg_A 177 ------------------------------GEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAI 225 (328)
T ss_dssp ------------------------------CCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred ------------------------------hhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcCchhh
Confidence 011224567777777777765 7888888888888888888776544457
Q ss_pred CCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCc
Q 002132 838 GKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLK 917 (961)
Q Consensus 838 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 917 (961)
+.+++|++|+|++|.....++..+ ..+++|+.|+|++|..+..++.... .+++|+.|+|++|+.++
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~------~~l~~L~~L~L~~n~~~~~~p~~~~--------~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIF------GGRAPLKRLILKDCSNLLTLPLDIH--------RLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCT------TCCCCCCEEECTTCTTCCBCCTTGG--------GCTTCCEEECTTCTTCC
T ss_pred ccCCCCCEEECcCCcchhhhHHHh------cCCCCCCEEECCCCCchhhcchhhh--------cCCCCCEEeCCCCCchh
Confidence 788888888888877665554432 4678888888888766666654433 78999999999999999
Q ss_pred CCCCCCCCCCCccEEEEccc
Q 002132 918 ALPDHIHQTTTLKELRIWAC 937 (961)
Q Consensus 918 ~lp~~~~~l~~L~~L~l~~~ 937 (961)
.+|..+.++++|+.+.+..+
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGG
T ss_pred hccHHHhhccCceEEeCCHH
Confidence 99999999999999988754
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.2e-22 Score=246.01 Aligned_cols=251 Identities=18% Similarity=0.090 Sum_probs=171.1
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCcccccch-h
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKLPE-T 647 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~Lp~-~ 647 (961)
++++.|.+.++.+. .+++..|.++++|++|+|++|. +..+ |..++++++|++|+|++|.++.+|. .
T Consensus 25 ~~l~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 92 (680)
T 1ziw_A 25 TNITVLNLTHNQLR------RLPAANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92 (680)
T ss_dssp TTCSEEECCSSCCC------CCCGGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEECCCCCCC------CcCHHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCEEECCCCccCccChhh
Confidence 78999999998754 2345558899999999999998 6555 6778999999999999999999987 5
Q ss_pred hhccCCCcEEeecCcccccccc-hhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccc-
Q 002132 648 LCELYNLEKLYITRCLYLEELP-EGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFE- 725 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~- 725 (961)
++++++|++|++++|. +..+| ..++++++|++|++++|......|..++++++|++|+ ...+.+....+..+.
T Consensus 93 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~----L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL----LSNNKIQALKSEELDI 167 (680)
T ss_dssp TTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE----CCSSCCCCBCHHHHGG
T ss_pred hccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE----ccCCcccccCHHHhhc
Confidence 9999999999999998 55554 6799999999999999976666677789999999998 566655554444333
Q ss_pred -cccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeee
Q 002132 726 -SLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFY 804 (961)
Q Consensus 726 -~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 804 (961)
.+++|+.|++.++...+..+. .+..+.+|+.|.+..+... ......+...+ ..++|+.|++++|
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~l~~~~l~-------~~~~~~~~~~l-~~~~L~~L~L~~n 232 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPG-------CFHAIGRLFGLFLNNVQLG-------PSLTEKLCLEL-ANTSIRNLSLSNS 232 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTT-------GGGGSSEECEEECTTCCCH-------HHHHHHHHHHH-TTSCCCEEECTTS
T ss_pred cccccccEEECCCCcccccChh-------hhhhhhhhhhhhccccccC-------hhhHHHHHHHh-hhccccEEEccCC
Confidence 457888888877755433222 3444556666665443221 00011111111 2345666666666
Q ss_pred cCCCCCCCccccccC--ccEEEEeCCCCCCcCCC-CCCccccceeeccccc
Q 002132 805 RGNTVFPNWLMSLTN--LRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 805 ~~~~~lp~~~~~l~~--L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 852 (961)
.+....|.++..++. |+.|+|++|.+....|. ++.+++|++|++++|.
T Consensus 233 ~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 555534555554433 66666666655443333 5566666666666554
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=3.3e-23 Score=244.43 Aligned_cols=344 Identities=15% Similarity=0.125 Sum_probs=214.5
Q ss_pred ccceeEEEEEeccccccc-cccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcc
Q 002132 546 DEKVRHLMLIIGREASFR-VPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRN 624 (961)
Q Consensus 546 ~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 624 (961)
+..+++|.+..+.....+ ..+..+++|++|.+.++.+. .+.+..|..+++|++|+|++|. +..+|..
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~------l~~lp~~ 118 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQDLEYLDVSHNR------LQNISCC 118 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTTCTTCCEEECTTSC------CCEECSC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC------cCCHHHhCCCCCCCEEECCCCc------CCccCcc
Confidence 356677777766655433 35666777777777776543 2233446677777777777776 6666665
Q ss_pred ccccCccceEEecCCcccccc--hhhhccCCCcEEeecCcccccccchhhhcccCC--ceeecCCccc--cccccccCCC
Q 002132 625 IEKLVHLRYLNLSCQNIRKLP--ETLCELYNLEKLYITRCLYLEELPEGIGKLINM--KHLLNYRTDS--LRYMPVGIGR 698 (961)
Q Consensus 625 i~~L~~Lr~L~L~~~~i~~Lp--~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~p~~i~~ 698 (961)
.+++|++|+|++|.++.+| ..++++++|++|++++|.. .. ..+..+++| ++|++++|.. ....|..+..
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-cc--CchhhhhhceeeEEEeecccccccccCcccccc
Confidence 6777777777777776543 5677777777777777663 22 234455555 7777766654 2333333332
Q ss_pred CC--------------------------CCCcCCceEeCCCCCcC-CCc---ccccc-----------------------
Q 002132 699 LT--------------------------GLRTLDEFHVIGGGGVD-GRK---ACWFE----------------------- 725 (961)
Q Consensus 699 L~--------------------------~L~~L~~~~~~~~~~~~-~~~---~~~l~----------------------- 725 (961)
+. +|+.|+. ..+... ... ...+.
T Consensus 194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l----~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~ 269 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI----KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEE----ECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHH
T ss_pred cCcceEEEEecCccchhhhhhhcccccceEEEecc----cccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHH
Confidence 22 1222110 000000 000 00000
Q ss_pred ----cccCCCcCCccccccCCCCCChh-------------------------hhhc--------------------cc-c
Q 002132 726 ----SLKNLKHLQVCGIRRLGDVSDVG-------------------------EAKR--------------------LE-L 755 (961)
Q Consensus 726 ----~L~~L~~L~~~~~~~~~~~~~~~-------------------------~~~~--------------------~~-l 755 (961)
...+|+.|++.++...+.++... .... .. .
T Consensus 270 ~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 349 (562)
T 3a79_B 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349 (562)
T ss_dssp HHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCC
T ss_pred HHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCc
Confidence 00134444444443332222100 0000 00 1
Q ss_pred CCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCC---CccccccCccEEEEeCCCCCC
Q 002132 756 DKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFP---NWLMSLTNLRSLVLYGCENCE 832 (961)
Q Consensus 756 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp---~~~~~l~~L~~L~L~~~~~~~ 832 (961)
..+++|+.|+++.|... ...+..+..+++|+.|++++|.+.. +| ..+..+++|+.|+|++|.+..
T Consensus 350 ~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFT-----------DSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCEEECCSSCCC-----------TTTTTTCCSCSSCCEEECCSSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred cCCCCceEEECCCCccc-----------cchhhhhcccCCCCEEECCCCCcCC-cccchhhhcCCCCCCEEECCCCcCCC
Confidence 45567777777766543 2234567888999999999999886 44 567899999999999999887
Q ss_pred cCCC--CCCccccceeecccccCceEeCCcccCCcccCcC-cccceeeccccccccccccccccccccccccccccceec
Q 002132 833 QLPP--LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAF-PKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLT 909 (961)
Q Consensus 833 ~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f-~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~ 909 (961)
.+|. +..+++|+.|++++|. +.. ... ..+ ++|+.|+++++ .++.++.... .+++|+.|+
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~-l~~---~~~-----~~l~~~L~~L~L~~N-~l~~ip~~~~--------~l~~L~~L~ 479 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNM-LTG---SVF-----RCLPPKVKVLDLHNN-RIMSIPKDVT--------HLQALQELN 479 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSC-CCG---GGG-----SSCCTTCSEEECCSS-CCCCCCTTTT--------SSCCCSEEE
T ss_pred ccChhhhcCcccCCEEECCCCC-CCc---chh-----hhhcCcCCEEECCCC-cCcccChhhc--------CCCCCCEEE
Confidence 5554 7899999999999987 321 111 244 69999999998 6776665433 799999999
Q ss_pred ccccccCcCCCCC-CCCCCCccEEEEccccccc
Q 002132 910 IARCPKLKALPDH-IHQTTTLKELRIWACELLG 941 (961)
Q Consensus 910 l~~c~~L~~lp~~-~~~l~~L~~L~l~~~~~l~ 941 (961)
+++|. ++.+|.. +..+++|+.|++++||...
T Consensus 480 L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 480 VASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCSSC-CCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCCC-CCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 99986 8899987 7889999999999998754
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.9e-23 Score=246.18 Aligned_cols=301 Identities=18% Similarity=0.178 Sum_probs=239.8
Q ss_pred cCCceeEEecCCCCCCCCccccccCcc-ccccCccceEEecCCcccccch-hhhccCCCcEEeecCcccccccchhhhcc
Q 002132 598 ESTSLRALDFWGSYDVSPFWTLKIPRN-IEKLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLEELPEGIGKL 675 (961)
Q Consensus 598 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 675 (961)
.+.++++|++++|. +..+|.. +..+++|++|+|++|.++.+|. .++++++|++|+|++|......|..++++
T Consensus 49 ~l~~l~~l~l~~~~------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKNST------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGCCCSEEEESSCE------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCceEEEeeCCC------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 46789999999998 8888876 5789999999999999998865 89999999999999998444445567999
Q ss_pred cCCceeecCCcccccccccc-CCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccc
Q 002132 676 INMKHLLNYRTDSLRYMPVG-IGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLE 754 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 754 (961)
++|++|++++|. +..+|.. ++.+++|++|+ ...+.+....+..+..+++|+.|++.++..... .
T Consensus 123 ~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~----Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~ 187 (597)
T 3oja_B 123 PLLTVLVLERND-LSSLPRGIFHNTPKLTTLS----MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------D 187 (597)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE----CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC----------C
T ss_pred CCCCEEEeeCCC-CCCCCHHHhccCCCCCEEE----eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc----------C
Confidence 999999999996 5567766 58999999998 677777776677788999999999887765332 2
Q ss_pred cCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcC
Q 002132 755 LDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQL 834 (961)
Q Consensus 755 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 834 (961)
+..+++|+.|++++|... .+..+++|+.|++++|.+.. +|..+ .++|+.|+|++|.+.+ +
T Consensus 188 ~~~l~~L~~L~l~~n~l~----------------~l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~-~ 247 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD-T 247 (597)
T ss_dssp GGGCTTCSEEECCSSCCS----------------EEECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC-C
T ss_pred hhhhhhhhhhhcccCccc----------------cccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC-C
Confidence 445788999999887643 34567799999999999876 55544 3799999999998765 4
Q ss_pred CCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccc
Q 002132 835 PPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCP 914 (961)
Q Consensus 835 ~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 914 (961)
+.++.+++|+.|+|++|. +..++...+ ..+++|+.|+|+++ .+..++.... .+|+|+.|++++|.
T Consensus 248 ~~l~~l~~L~~L~Ls~N~-l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~l~~~~~--------~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNE-LEKIMYHPF-----VKMQRLERLYISNN-RLVALNLYGQ--------PIPTLKVLDLSHNH 312 (597)
T ss_dssp GGGGGCTTCSEEECCSSC-CCEEESGGG-----TTCSSCCEEECTTS-CCCEEECSSS--------CCTTCCEEECCSSC
T ss_pred hhhccCCCCCEEECCCCc-cCCCCHHHh-----cCccCCCEEECCCC-CCCCCCcccc--------cCCCCcEEECCCCC
Confidence 668999999999999998 444422222 57899999999998 5666655433 79999999999996
Q ss_pred cCcCCCCCCCCCCCccEEEEcccccccccccCCCCcccceEEec
Q 002132 915 KLKALPDHIHQTTTLKELRIWACELLGKHYRGGTEKTGLKYHTF 958 (961)
Q Consensus 915 ~L~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~ 958 (961)
+..+|..+..+++|+.|++++|+..... ....++|+.+.+
T Consensus 313 -l~~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l 352 (597)
T 3oja_B 313 -LLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 352 (597)
T ss_dssp -CCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred -CCccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence 7789988888999999999999875443 334455555544
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=3.7e-23 Score=243.91 Aligned_cols=354 Identities=17% Similarity=0.161 Sum_probs=205.9
Q ss_pred ccceeEEEEEecccccc-ccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccc--cC
Q 002132 546 DEKVRHLMLIIGREASF-RVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLK--IP 622 (961)
Q Consensus 546 ~~~~r~lsl~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~--lp 622 (961)
...+++|.+..+..... +..+..+++|++|.+.++... ..++..|..+++|++|++++|. +.. .|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~ 116 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS------SLSSSWFGPLSSLKYLNLMGNP------YQTLGVT 116 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC------SCCHHHHTTCTTCCEEECTTCC------CSSSCSS
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccC------ccCHHHhccCCCCcEEECCCCc------ccccchh
Confidence 45788898888876653 356788999999999998754 3356668899999999999998 653 46
Q ss_pred ccccccCccceEEecCCc-ccccc-hhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCcccccccccc-CCCC
Q 002132 623 RNIEKLVHLRYLNLSCQN-IRKLP-ETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVG-IGRL 699 (961)
Q Consensus 623 ~~i~~L~~Lr~L~L~~~~-i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L 699 (961)
..++++++|++|++++|. ++.+| ..+.++++|++|++++|......|..+.++++|++|++++|.. ..+|.. ++.+
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l 195 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADIL 195 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHST
T ss_pred hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-cccchhhHhhc
Confidence 788999999999999987 67776 4788999999999999886566777777777777777666542 223322 1234
Q ss_pred CCCCcCCceEeCCCCCcCCCc-----------------------------------------------------------
Q 002132 700 TGLRTLDEFHVIGGGGVDGRK----------------------------------------------------------- 720 (961)
Q Consensus 700 ~~L~~L~~~~~~~~~~~~~~~----------------------------------------------------------- 720 (961)
++|+.|+. ..+.+.+..
T Consensus 196 ~~L~~L~L----~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 271 (549)
T 2z81_A 196 SSVRYLEL----RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271 (549)
T ss_dssp TTBSEEEE----ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC
T ss_pred ccccEEEc----cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc
Confidence 44444431 111111100
Q ss_pred --ccccccccCCCcCCccccccCC-----CCCC-----------------hhhhhccccCCCCCCCeEEEEeecCCCCCc
Q 002132 721 --ACWFESLKNLKHLQVCGIRRLG-----DVSD-----------------VGEAKRLELDKKKYLSCLRLSFDEKEQGGE 776 (961)
Q Consensus 721 --~~~l~~L~~L~~L~~~~~~~~~-----~~~~-----------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 776 (961)
...+..+++|+.|.+..+.... ..+. ........+..+++|+.|+++.|...
T Consensus 272 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~---- 347 (549)
T 2z81_A 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV---- 347 (549)
T ss_dssp CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC----
T ss_pred cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccc----
Confidence 0001111222222211111000 0000 00000001135778888888877654
Q ss_pred cCCcchHHHH---HhhCCCCCCCceEEEeeecCCCCCC---CccccccCccEEEEeCCCCCCcCCCCCCccccceeeccc
Q 002132 777 RRKNEDDQLL---LEALQPPPDLKELEIRFYRGNTVFP---NWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTI 850 (961)
Q Consensus 777 ~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~lp---~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 850 (961)
..+ ...+..+++|+.|++++|.+.. +| ..+..+++|+.|+|++|.+....+.++.+++|++|++++
T Consensus 348 -------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 348 -------EEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp -------HHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTT
T ss_pred -------cccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCC
Confidence 122 2335667788888888887766 44 346678888888888887653333477778888888887
Q ss_pred ccCceEeCCcccC------------CcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcC
Q 002132 851 MRSVKRVGDECLG------------IEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKA 918 (961)
Q Consensus 851 ~~~l~~~~~~~~~------------~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~ 918 (961)
|. ++.++..... ......+++|+.|+++++ .++.++.. ..+++|+.|++++|. ++.
T Consensus 420 N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~---------~~l~~L~~L~Ls~N~-l~~ 487 (549)
T 2z81_A 420 TG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA---------SLFPVLLVMKISRNQ-LKS 487 (549)
T ss_dssp SC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG---------GGCTTCCEEECCSSC-CCC
T ss_pred CC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc---------ccCccCCEEecCCCc-cCC
Confidence 76 4443321100 000023455555555554 33333321 135556666665553 333
Q ss_pred CCC-CCCCCCCccEEEEcccccc
Q 002132 919 LPD-HIHQTTTLKELRIWACELL 940 (961)
Q Consensus 919 lp~-~~~~l~~L~~L~l~~~~~l 940 (961)
+|. .+..+++|+.|++++|+..
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSCBC
T ss_pred cCHHHHhcCcccCEEEecCCCcc
Confidence 332 3445556666666555543
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.2e-22 Score=229.24 Aligned_cols=300 Identities=19% Similarity=0.150 Sum_probs=225.7
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcc
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKL 675 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 675 (961)
+..++.|++|++++|. +..+| .++.+++|++|+|++|.++.+| ++++++|++|++++|. +..+| ++++
T Consensus 38 ~~~l~~L~~L~Ls~n~------l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l 105 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS------ITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPL 105 (457)
T ss_dssp HHHHTTCCEEECCSSC------CCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTC
T ss_pred hhHcCCCCEEEccCCC------cccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCC
Confidence 5678999999999998 77777 6999999999999999999987 8999999999999998 66675 8999
Q ss_pred cCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhcccc
Q 002132 676 INMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLEL 755 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l 755 (961)
++|++|++++|. +..+| ++.+++|++|+ ...+.+.+. .+..+++|+.|++..+...+.+ .+
T Consensus 106 ~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~----l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---------~~ 166 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD--VSQNPLLTYLN----CARNTLTEI---DVSHNTQLTELDCHLNKKITKL---------DV 166 (457)
T ss_dssp TTCCEEECCSSC-CSCCC--CTTCTTCCEEE----CTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---------CC
T ss_pred CcCCEEECCCCc-CCeec--CCCCCcCCEEE----CCCCcccee---ccccCCcCCEEECCCCCccccc---------cc
Confidence 999999999996 45565 88999999988 666666553 3677888888888777544432 35
Q ss_pred CCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCC
Q 002132 756 DKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLP 835 (961)
Q Consensus 756 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~ 835 (961)
..+++|+.|++++|.... . .+..+++|+.|++++|.+.. ++ +..+++|+.|+|++|.+.+ +|
T Consensus 167 ~~l~~L~~L~ls~n~l~~-------------l-~l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-------------L-DVSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-------------C-CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC
T ss_pred ccCCcCCEEECCCCccce-------------e-ccccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCcccc-cC
Confidence 678899999999887653 1 16778999999999999887 53 7789999999999998876 56
Q ss_pred CCCCccccceeecccccCceEeCCcccCCcccCcCcccceeecccccccccccccccc-ccccccccccccceecccccc
Q 002132 836 PLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITR-TGNTVINIMPRLSSLTIARCP 914 (961)
Q Consensus 836 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~-~~~~~~~~~p~L~~L~l~~c~ 914 (961)
++.+++|+.|++++|. ++.++. +.|++|+.|+++++ +++.+...... .+......+++|+.|++++|+
T Consensus 229 -~~~l~~L~~L~l~~N~-l~~~~~--------~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNP-LTELDV--------STLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT 297 (457)
T ss_dssp -CTTCTTCSEEECCSSC-CSCCCC--------TTCTTCCEEECTTC-CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCT
T ss_pred -ccccCCCCEEEeeCCc-CCCcCH--------HHCCCCCEEeccCC-CCCEEECCCCccCCcccccccccCCEEECCCCc
Confidence 8999999999999987 444431 45666666655543 34433322110 011113468999999999998
Q ss_pred cCcCCCCC--------CCCCCCccEEEEcccccccccccCCCCcccceEEec
Q 002132 915 KLKALPDH--------IHQTTTLKELRIWACELLGKHYRGGTEKTGLKYHTF 958 (961)
Q Consensus 915 ~L~~lp~~--------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~ 958 (961)
.++.+|.. +.++++|+.|++++|.... + .....++|+.+.+
T Consensus 298 ~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l 346 (457)
T 3bz5_A 298 QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L--DVSHNTKLKSLSC 346 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C--CCTTCTTCSEEEC
T ss_pred ccceeccCCCcceEechhhcccCCEEECCCCcccc-c--ccccCCcCcEEEC
Confidence 77766532 3456778888888776544 2 2444555555543
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=5.5e-22 Score=229.23 Aligned_cols=316 Identities=20% Similarity=0.195 Sum_probs=247.4
Q ss_pred ccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCccccc-chhhh
Q 002132 572 IRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKL-PETLC 649 (961)
Q Consensus 572 Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~L-p~~i~ 649 (961)
.+.+.+.+.... .++.. -.+.|++|+|++|. +..+ |..+.++++|++|+|++|.++.+ |..+.
T Consensus 13 ~~~v~c~~~~l~------~ip~~---~~~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 77 (477)
T 2id5_A 13 DRAVLCHRKRFV------AVPEG---IPTETRLLDLGKNR------IKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 77 (477)
T ss_dssp TTEEECCSCCCS------SCCSC---CCTTCSEEECCSSC------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCEEEeCCCCcC------cCCCC---CCCCCcEEECCCCc------cceECHhHccCCCCCCEEECCCCccCEeChhhhh
Confidence 356777665532 12222 24689999999998 7776 56899999999999999999977 77899
Q ss_pred ccCCCcEEeecCcccccccchh-hhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCccccccccc
Q 002132 650 ELYNLEKLYITRCLYLEELPEG-IGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLK 728 (961)
Q Consensus 650 ~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~ 728 (961)
++++|++|+|++|. +..+|.. +.++++|++|++++|......|..+..+++|++|+ ...+.+....+..+..++
T Consensus 78 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 78 NLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE----VGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp TCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE----ECCTTCCEECTTSSTTCT
T ss_pred CCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE----CCCCccceeChhhccCCC
Confidence 99999999999998 6777764 68999999999999986666677899999999998 566666655566788889
Q ss_pred CCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCC
Q 002132 729 NLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNT 808 (961)
Q Consensus 729 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 808 (961)
+|+.|++.++...... ...+..+++|+.|+++.+..... ....+..+++|+.|++++|....
T Consensus 153 ~L~~L~l~~n~l~~~~-------~~~l~~l~~L~~L~l~~n~i~~~-----------~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIP-------TEALSHLHGLIVLRLRHLNINAI-----------RDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp TCCEEEEESCCCSSCC-------HHHHTTCTTCCEEEEESCCCCEE-----------CTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCEEECCCCcCcccC-------hhHhcccCCCcEEeCCCCcCcEe-----------ChhhcccCcccceeeCCCCcccc
Confidence 9999988777553321 12466789999999998876421 12357778999999999988777
Q ss_pred CCCCccccccCccEEEEeCCCCCCcCC--CCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccc
Q 002132 809 VFPNWLMSLTNLRSLVLYGCENCEQLP--PLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEE 886 (961)
Q Consensus 809 ~lp~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~ 886 (961)
.+|.......+|+.|+|++|.+.. +| .++.+++|+.|+|++|. +..++...+ ..+++|+.|+|+++ .+..
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~ 286 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNP-ISTIEGSML-----HELLRLQEIQLVGG-QLAV 286 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSC-CCEECTTSC-----TTCTTCCEEECCSS-CCSE
T ss_pred ccCcccccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCc-CCccChhhc-----cccccCCEEECCCC-ccce
Confidence 678777777799999999997764 44 38899999999999998 666655433 57899999999998 4544
Q ss_pred cccccccccccccccccccceecccccccCcCCCC-CCCCCCCccEEEEccccccc
Q 002132 887 WDYGITRTGNTVINIMPRLSSLTIARCPKLKALPD-HIHQTTTLKELRIWACELLG 941 (961)
Q Consensus 887 ~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~~~~l~ 941 (961)
+.. ..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++|+...
T Consensus 287 ~~~-------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 287 VEP-------YAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp ECT-------TTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ECH-------HHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCccC
Confidence 422 224478999999999995 777775 45778999999999998653
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=9.3e-22 Score=215.47 Aligned_cols=290 Identities=18% Similarity=0.203 Sum_probs=138.8
Q ss_pred CccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCccccc-chhh
Q 002132 571 RIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIRKL-PETL 648 (961)
Q Consensus 571 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~L-p~~i 648 (961)
+++.+.+.++... .++.. -.+.|++|++++|. +..++ ..+.++++|++|+|++|.++.+ |..+
T Consensus 34 ~l~~l~~~~~~l~------~ip~~---~~~~l~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLK------AVPKE---ISPDTTLLDLQNND------ISELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp ETTEEECCSSCCS------SCCSC---CCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred cCCEEECCCCCcc------ccCCC---CCCCCeEEECCCCc------CCccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence 4666666655432 11211 13466677777666 55553 4566677777777777666655 5566
Q ss_pred hccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccc-cCCCCCCCCcCCceEeCCCCCcCC--Ccccccc
Q 002132 649 CELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPV-GIGRLTGLRTLDEFHVIGGGGVDG--RKACWFE 725 (961)
Q Consensus 649 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~--~~~~~l~ 725 (961)
+++++|++|++++|. +..+|..+. ++|++|++++|.. ..+|. .+..+++|++|+ ...+.+.. ..+..+.
T Consensus 99 ~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 99 SPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIE----MGGNPLENSGFEPGAFD 170 (332)
T ss_dssp TTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEE----CCSCCCBGGGSCTTSSC
T ss_pred hCcCCCCEEECCCCc-CCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEE----CCCCccccCCCCccccc
Confidence 667777777777666 556665554 5677777766643 33333 356666666665 33333221 1222333
Q ss_pred cccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeec
Q 002132 726 SLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYR 805 (961)
Q Consensus 726 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 805 (961)
.+ +|+.|++.++.... ++. . .+++|++|++++|.
T Consensus 171 ~l-~L~~L~l~~n~l~~-l~~------------------------------------------~--~~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 171 GL-KLNYLRISEAKLTG-IPK------------------------------------------D--LPETLNELHLDHNK 204 (332)
T ss_dssp SC-CCSCCBCCSSBCSS-CCS------------------------------------------S--SCSSCSCCBCCSSC
T ss_pred CC-ccCEEECcCCCCCc-cCc------------------------------------------c--ccCCCCEEECCCCc
Confidence 33 45555444443222 110 0 01344555555554
Q ss_pred CCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccc
Q 002132 806 GNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLEL 884 (961)
Q Consensus 806 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L 884 (961)
+....|..+..+++|+.|+|++|.+....+. ++.+++|+.|++++|. ++.++..+ ..+++|+.|+++++ .+
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l------~~l~~L~~L~l~~N-~l 276 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGL------PDLKLLQVVYLHTN-NI 276 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTG------GGCTTCCEEECCSS-CC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhh------hcCccCCEEECCCC-CC
Confidence 4442234444555555555555544433332 4455555555555543 33333221 24455555555544 23
Q ss_pred cccccccccccccccccccccceecccccccC--cCCCCCCCCCCCccEEEEcccc
Q 002132 885 EEWDYGITRTGNTVINIMPRLSSLTIARCPKL--KALPDHIHQTTTLKELRIWACE 938 (961)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L--~~lp~~~~~l~~L~~L~l~~~~ 938 (961)
+.++...-. .......+++|+.|++.+|+.. ...|..+..+++|+.+++++|.
T Consensus 277 ~~~~~~~~~-~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 277 TKVGVNDFC-PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBCCTTSSS-CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccChhHcc-ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 333221000 0000012455666666666533 2233444556666666666654
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=2.3e-22 Score=217.86 Aligned_cols=250 Identities=21% Similarity=0.248 Sum_probs=153.3
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCC-CCCCCCccccccCccccccCccceEEecCCccc-ccchh
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWG-SYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR-KLPET 647 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~-~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-~Lp~~ 647 (961)
.+++.|.+.++...... . .+..+..+++|++|++++ |.. ...+|..++++++|++|+|++|.++ .+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~---~-~~~~l~~l~~L~~L~L~~~n~l-----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY---P-IPSSLANLPYLNFLYIGGINNL-----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCE---E-CCGGGGGCTTCSEEEEEEETTE-----ESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCc---c-cChhHhCCCCCCeeeCCCCCcc-----cccCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 46777777766543100 1 223477788888888884 541 3367778888888888888888887 77888
Q ss_pred hhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCC-CCCcCCceEeCCCCCcCCCccccccc
Q 002132 648 LCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLT-GLRTLDEFHVIGGGGVDGRKACWFES 726 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~~~l~~ 726 (961)
+.++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|+ ...+.+.+..+..+..
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~----L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT----ISRNRLTGKIPPTFAN 196 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE----CCSSEEEEECCGGGGG
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE----CcCCeeeccCChHHhC
Confidence 88888888888888875557788888888888888888865557777777776 777776 5555444444445555
Q ss_pred ccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecC
Q 002132 727 LKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRG 806 (961)
Q Consensus 727 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 806 (961)
+. |+.|++.++...+..+ ..+..+++|+.|+++.|.... ....+..+++|++|++++|.+
T Consensus 197 l~-L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDAS-------VLFGSDKNTQKIHLAKNSLAF------------DLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp CC-CSEEECCSSEEEECCG-------GGCCTTSCCSEEECCSSEECC------------BGGGCCCCTTCCEEECCSSCC
T ss_pred Cc-ccEEECcCCcccCcCC-------HHHhcCCCCCEEECCCCceee------------ecCcccccCCCCEEECcCCcc
Confidence 54 5555555554332221 134445555555555444321 011234445555555555555
Q ss_pred CCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeeccccc
Q 002132 807 NTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMR 852 (961)
Q Consensus 807 ~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 852 (961)
.+.+|.++..+++|+.|+|++|.+.+.+|..+++++|+.|++.+|+
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 5335555555555555555555555555555555555555555554
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.7e-21 Score=213.33 Aligned_cols=271 Identities=17% Similarity=0.170 Sum_probs=131.8
Q ss_pred CceeEEecCCCCCCCCccccccCc-cccccCccceEEecCCccccc-chhhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPR-NIEKLVHLRYLNLSCQNIRKL-PETLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
+.|++|+|++|. +..+|. .++++++|++|+|++|.++.+ |..+.++++|++|++++|. +..+|..+. ++
T Consensus 52 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~ 122 (330)
T 1xku_A 52 PDTALLDLQNNK------ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KT 122 (330)
T ss_dssp TTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TT
T ss_pred CCCeEEECCCCc------CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--cc
Confidence 456666666665 555543 456666666666666666655 5556666666666666665 455555443 56
Q ss_pred CceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCC--CcccccccccCCCcCCccccccCCCCCChhhhhcccc
Q 002132 678 MKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDG--RKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLEL 755 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~--~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l 755 (961)
|++|++++|......+..+..+++|++|+ ...+.+.. ..+.. +
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~~~~-------------------------------~ 167 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVE----LGTNPLKSSGIENGA-------------------------------F 167 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEE----CCSSCCCGGGBCTTG-------------------------------G
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEE----CCCCcCCccCcChhh-------------------------------c
Confidence 66666666643222223345555555554 22222211 11122 3
Q ss_pred CCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCC
Q 002132 756 DKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLP 835 (961)
Q Consensus 756 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~ 835 (961)
..+++|+.|+++.+..... +.. .+++|++|++++|.+....|.++..+++|+.|+|++|.+....+
T Consensus 168 ~~l~~L~~L~l~~n~l~~l------------~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITTI------------PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp GGCTTCCEEECCSSCCCSC------------CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred cCCCCcCEEECCCCccccC------------Ccc--ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence 3344444444444333210 000 11456666666655554334555556666666666665544333
Q ss_pred -CCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccc
Q 002132 836 -PLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCP 914 (961)
Q Consensus 836 -~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 914 (961)
.++.+++|+.|+|++|. +..++..+ ..+++|+.|+++++ .++.++...-. ........+.|+.|++.+||
T Consensus 234 ~~~~~l~~L~~L~L~~N~-l~~lp~~l------~~l~~L~~L~l~~N-~i~~~~~~~f~-~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 234 GSLANTPHLRELHLNNNK-LVKVPGGL------ADHKYIQVVYLHNN-NISAIGSNDFC-PPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTGGGSTTCCEEECCSSC-CSSCCTTT------TTCSSCCEEECCSS-CCCCCCTTSSS-CSSCCTTSCCCSEEECCSSS
T ss_pred hhccCCCCCCEEECCCCc-CccCChhh------ccCCCcCEEECCCC-cCCccChhhcC-CcccccccccccceEeecCc
Confidence 25555666666666554 33333221 34555666666555 33333321100 00001124566666666666
Q ss_pred cCc--CCCCCCCCCCCccEEEEccc
Q 002132 915 KLK--ALPDHIHQTTTLKELRIWAC 937 (961)
Q Consensus 915 ~L~--~lp~~~~~l~~L~~L~l~~~ 937 (961)
... ..|..+..+++|+.+++++|
T Consensus 305 ~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 305 VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccCccccccccceeEEEeccc
Confidence 321 22344555666777776665
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=4.2e-22 Score=215.71 Aligned_cols=252 Identities=19% Similarity=0.186 Sum_probs=167.6
Q ss_pred CceeEEecCCCCCCCCcccc---ccCccccccCccceEEecC-Cccc-ccchhhhccCCCcEEeecCcccccccchhhhc
Q 002132 600 TSLRALDFWGSYDVSPFWTL---KIPRNIEKLVHLRYLNLSC-QNIR-KLPETLCELYNLEKLYITRCLYLEELPEGIGK 674 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~---~lp~~i~~L~~Lr~L~L~~-~~i~-~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 674 (961)
.+++.|+|++|. +. .+|..++++++|++|+|++ |.+. .+|..++++++|++|++++|.....+|..+.+
T Consensus 50 ~~l~~L~L~~~~------l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLN------LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCC------CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCC------ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 579999999998 55 6899999999999999994 7776 78999999999999999999966689999999
Q ss_pred ccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCccccccccc-CCCcCCccccccCCCCCChhhhhcc
Q 002132 675 LINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLK-NLKHLQVCGIRRLGDVSDVGEAKRL 753 (961)
Q Consensus 675 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~~~~~~~~~~~~~~~~~~~~ 753 (961)
+++|++|++++|.....+|..++.+++|++|+ ...+.+.+..+..+..+. +|+.|++.++...+..
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~----L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~--------- 190 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGIT----FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--------- 190 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEE----CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC---------
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEE----CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC---------
Confidence 99999999999976657888888888888887 555544333344444443 4444444333221111
Q ss_pred ccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCc
Q 002132 754 ELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQ 833 (961)
Q Consensus 754 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~ 833 (961)
+..+..++ |+.|++++|.+....|..+..+++|+.|+|++|.+...
T Consensus 191 ---------------------------------~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 191 ---------------------------------PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp ---------------------------------CGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred ---------------------------------ChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 11122222 66666666666554566666677777777777766655
Q ss_pred CCCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeecccccccc-ccccccccccccccccccccceecccc
Q 002132 834 LPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELE-EWDYGITRTGNTVINIMPRLSSLTIAR 912 (961)
Q Consensus 834 l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~-~~~~~~~~~~~~~~~~~p~L~~L~l~~ 912 (961)
+|.++.+++|++|+|++|.....++..+ ..+++|+.|+++++. +. .++.. ..+++|+.|++.+
T Consensus 237 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l------~~l~~L~~L~Ls~N~-l~~~ip~~---------~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGL------TQLKFLHSLNVSFNN-LCGEIPQG---------GNLQRFDVSAYAN 300 (313)
T ss_dssp GGGCCCCTTCCEEECCSSCCEECCCGGG------GGCTTCCEEECCSSE-EEEECCCS---------TTGGGSCGGGTCS
T ss_pred cCcccccCCCCEEECcCCcccCcCChHH------hcCcCCCEEECcCCc-ccccCCCC---------ccccccChHHhcC
Confidence 5556666777777776665222233221 345666666666652 22 22221 2566666666666
Q ss_pred cccCcCCC
Q 002132 913 CPKLKALP 920 (961)
Q Consensus 913 c~~L~~lp 920 (961)
|+.+...|
T Consensus 301 N~~lc~~p 308 (313)
T 1ogq_A 301 NKCLCGSP 308 (313)
T ss_dssp SSEEESTT
T ss_pred CCCccCCC
Confidence 66555444
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2.4e-20 Score=204.27 Aligned_cols=293 Identities=17% Similarity=0.122 Sum_probs=207.9
Q ss_pred ceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-Ccccc
Q 002132 548 KVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIE 626 (961)
Q Consensus 548 ~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~ 626 (961)
.++.+.+..+.....+..+ .++++.|.+.++.+. .+++..|..+++|++|++++|. +..+ |..++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDIS------ELRKDDFKGLQHLYALVLVNNK------ISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSC------CCEECGGGST
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCC------ccCHhHhhCCCCCcEEECCCCc------cCccCHhHhh
Confidence 4556666655555444433 368999999988753 2344458899999999999998 7666 77899
Q ss_pred ccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccch-hhhcccCCceeecCCcccc--ccccccCCCCCCCC
Q 002132 627 KLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTDSL--RYMPVGIGRLTGLR 703 (961)
Q Consensus 627 ~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~--~~~p~~i~~L~~L~ 703 (961)
++++|++|+|++|.++.+|..+. ++|++|++++|. +..+|. .+.++++|++|++++|... ...|..+..+ +|+
T Consensus 100 ~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175 (332)
T ss_dssp TCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred CcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence 99999999999999999998876 899999999998 566665 5889999999999999653 2455667777 888
Q ss_pred cCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchH
Q 002132 704 TLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDD 783 (961)
Q Consensus 704 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 783 (961)
.|+ ...+.+... +..+ .++|+.|++.++......
T Consensus 176 ~L~----l~~n~l~~l-~~~~--~~~L~~L~l~~n~i~~~~--------------------------------------- 209 (332)
T 2ft3_A 176 YLR----ISEAKLTGI-PKDL--PETLNELHLDHNKIQAIE--------------------------------------- 209 (332)
T ss_dssp CCB----CCSSBCSSC-CSSS--CSSCSCCBCCSSCCCCCC---------------------------------------
T ss_pred EEE----CcCCCCCcc-Cccc--cCCCCEEECCCCcCCccC---------------------------------------
Confidence 888 555544432 2222 156777766655432211
Q ss_pred HHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccC
Q 002132 784 QLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLG 863 (961)
Q Consensus 784 ~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 863 (961)
...+..+++|+.|++++|.+....|.++..+++|+.|+|++|.+....+.++.+++|+.|++++|. ++.++...+.
T Consensus 210 ---~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~ 285 (332)
T 2ft3_A 210 ---LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFC 285 (332)
T ss_dssp ---TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSS
T ss_pred ---HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHcc
Confidence 123556678888888888888744567888999999999999876333348889999999999887 6777655443
Q ss_pred Ccc-cCcCcccceeeccccccccccccccccccccccccccccceecccccc
Q 002132 864 IEI-IDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCP 914 (961)
Q Consensus 864 ~~~-~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 914 (961)
... ...+++|+.|++.+++ +..+... +..+..+++|+.|++.+|.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~-~~~~~~~-----~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNP-VPYWEVQ-----PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSS-SCGGGSC-----GGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCc-ccccccC-----cccccccchhhhhhccccc
Confidence 221 1247889999999985 3322221 2234578889999998875
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=6.9e-21 Score=228.97 Aligned_cols=148 Identities=17% Similarity=0.178 Sum_probs=119.9
Q ss_pred cccceeEEEEEeccccccc-cccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCc
Q 002132 545 LDEKVRHLMLIIGREASFR-VPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPR 623 (961)
Q Consensus 545 ~~~~~r~lsl~~~~~~~~~-~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~ 623 (961)
.+..+++|.++.+.+...+ ..+..+++|++|.++++.+. .+++.+|.++++|++|+|++|. +..+|.
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~------~i~~~~f~~L~~L~~L~Ls~N~------l~~l~~ 117 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNP------IQSLAL 117 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCC------CCEECG
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC------CcChhHhcCCCCCCEEEccCCc------CCCCCH
Confidence 5678999999998877643 46889999999999998754 3456678999999999999998 888875
Q ss_pred -cccccCccceEEecCCcccccch-hhhccCCCcEEeecCccccc-ccchhhhcccCCceeecCCccccccccccCCCCC
Q 002132 624 -NIEKLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLE-ELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLT 700 (961)
Q Consensus 624 -~i~~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~ 700 (961)
.|.+|.+|++|+|++|.++.+|. .+++|++|++|++++|.... .+|..++.+++|++|++++|......|..+..+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 57999999999999999999876 48999999999999998432 4678889999999999999965444444455554
Q ss_pred CCCc
Q 002132 701 GLRT 704 (961)
Q Consensus 701 ~L~~ 704 (961)
+++.
T Consensus 198 ~l~~ 201 (635)
T 4g8a_A 198 QMPL 201 (635)
T ss_dssp TCTT
T ss_pred hhhh
Confidence 4443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.9e-20 Score=203.50 Aligned_cols=294 Identities=15% Similarity=0.114 Sum_probs=204.9
Q ss_pred ceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-Ccccc
Q 002132 548 KVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIE 626 (961)
Q Consensus 548 ~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~ 626 (961)
..+.+.+........+..+ .+.++.|.+.++.+. .+++..|..+++|++|+|++|. +..+ |..++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~ 97 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKIT------EIKDGDFKNLKNLHTLILINNK------ISKISPGAFA 97 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCC------CBCTTTTTTCTTCCEEECCSSC------CCCBCTTTTT
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCCcCC------EeChhhhccCCCCCEEECCCCc------CCeeCHHHhc
Confidence 3444444444444333322 368999999988754 2334458899999999999998 7666 78899
Q ss_pred ccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccc--cccccCCCCCCCCc
Q 002132 627 KLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLR--YMPVGIGRLTGLRT 704 (961)
Q Consensus 627 ~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~ 704 (961)
++++|++|+|++|.++.+|..+. ++|++|++++|......+..+.++++|++|++++|.... ..+..+..+++|+.
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 99999999999999999998775 799999999998444444568899999999999986432 44566778888888
Q ss_pred CCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHH
Q 002132 705 LDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQ 784 (961)
Q Consensus 705 L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 784 (961)
|+ ...+.+... +..+ .++|+.|+++.|....
T Consensus 176 L~----l~~n~l~~l-~~~~---------------------------------~~~L~~L~l~~n~l~~----------- 206 (330)
T 1xku_A 176 IR----IADTNITTI-PQGL---------------------------------PPSLTELHLDGNKITK----------- 206 (330)
T ss_dssp EE----CCSSCCCSC-CSSC---------------------------------CTTCSEEECTTSCCCE-----------
T ss_pred EE----CCCCccccC-Cccc---------------------------------cccCCEEECCCCcCCc-----------
Confidence 77 444422211 1000 1355666665554331
Q ss_pred HHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccCC
Q 002132 785 LLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGI 864 (961)
Q Consensus 785 ~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 864 (961)
..+..+..+++|++|++++|.+....+.++..+++|+.|+|++|.+......+..+++|++|++++|. ++.++...+..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~ 285 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCP 285 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCC
Confidence 01235667788999999999888744557888999999999999877444458899999999999987 77776655432
Q ss_pred c-ccCcCcccceeeccccccccccccccccccccccccccccceeccccc
Q 002132 865 E-IIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARC 913 (961)
Q Consensus 865 ~-~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 913 (961)
. ....++.|+.|++.+++ +..|... +..+..+++|+.|++++|
T Consensus 286 ~~~~~~~~~l~~l~l~~N~-~~~~~i~-----~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNP-VQYWEIQ-----PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCCTTSCCCSEEECCSSS-SCGGGSC-----GGGGTTCCCGGGEEC---
T ss_pred cccccccccccceEeecCc-ccccccC-----ccccccccceeEEEeccc
Confidence 1 11246889999999885 3433322 223456788889988876
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=7.7e-21 Score=207.02 Aligned_cols=124 Identities=23% Similarity=0.387 Sum_probs=102.6
Q ss_pred CCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhh
Q 002132 569 VKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETL 648 (961)
Q Consensus 569 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i 648 (961)
..+++.|.+.++.+. .++.. +..+++|++|+|++|. +..+|..++++++|++|+|++|.++.+|..+
T Consensus 80 ~~~l~~L~L~~n~l~------~lp~~-l~~l~~L~~L~L~~n~------l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l 146 (328)
T 4fcg_A 80 QPGRVALELRSVPLP------QFPDQ-AFRLSHLQHMTIDAAG------LMELPDTMQQFAGLETLTLARNPLRALPASI 146 (328)
T ss_dssp STTCCEEEEESSCCS------SCCSC-GGGGTTCSEEEEESSC------CCCCCSCGGGGTTCSEEEEESCCCCCCCGGG
T ss_pred ccceeEEEccCCCch------hcChh-hhhCCCCCEEECCCCC------ccchhHHHhccCCCCEEECCCCccccCcHHH
Confidence 467788888777643 22333 5568999999999998 7789999999999999999999999999999
Q ss_pred hccCCCcEEeecCcccccccchhhhc---------ccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 649 CELYNLEKLYITRCLYLEELPEGIGK---------LINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 649 ~~L~~L~~L~L~~~~~l~~lp~~i~~---------L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
+++++|++|++++|..+..+|..+.. +++|++|++++|. +..+|..++++++|++|+
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLK 212 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEE
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEE
Confidence 99999999999999888889987765 8999999999885 447777777777777776
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=1.1e-19 Score=206.66 Aligned_cols=305 Identities=19% Similarity=0.208 Sum_probs=185.0
Q ss_pred cccceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhc-CCceeEEecCCCCCCCCccccccCc
Q 002132 545 LDEKVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRE-STSLRALDFWGSYDVSPFWTLKIPR 623 (961)
Q Consensus 545 ~~~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~~~~~~~~~~lp~ 623 (961)
.+..++.+.+..+.....+. ..++|+.|.+.++.... +.. .+.|++|++++|. +..+|
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~-----------l~~~~~~L~~L~L~~n~------l~~lp- 147 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKA-----------LSDLPPLLEYLGVSNNQ------LEKLP- 147 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC-----------CCSCCTTCCEEECCSSC------CSSCC-
T ss_pred CcCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCc-----------ccCCCCCCCEEECcCCC------CCCCc-
Confidence 34567778777776654332 24678888887776431 111 2678888888887 66777
Q ss_pred cccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCC
Q 002132 624 NIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLR 703 (961)
Q Consensus 624 ~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 703 (961)
.++++++|++|++++|.++.+|..+ .+|++|++++|. +..+| +++++++|++|++++|. +..+|... ++|+
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~ 218 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLE 218 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCC
T ss_pred ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCc-CCcCCCCc---Cccc
Confidence 5888888888888888888877654 478888888887 56677 58888888888888875 34455433 4666
Q ss_pred cCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchH
Q 002132 704 TLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDD 783 (961)
Q Consensus 704 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 783 (961)
+|+ ...+.+.. .+ .+..+++|+.|++.++.... ++. ...+|+.|+++.|.....
T Consensus 219 ~L~----l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~----------~~~~L~~L~l~~N~l~~l--------- 272 (454)
T 1jl5_A 219 SIV----AGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPD----------LPPSLEALNVRDNYLTDL--------- 272 (454)
T ss_dssp EEE----CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCS----------CCTTCCEEECCSSCCSCC---------
T ss_pred EEE----CcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-ccc----------cccccCEEECCCCccccc---------
Confidence 666 44454442 23 36677777777776665432 221 125777888777654320
Q ss_pred HHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCc-cccceeecccccCceEeCCccc
Q 002132 784 QLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKL-QSLEKLSLTIMRSVKRVGDECL 862 (961)
Q Consensus 784 ~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l-~~L~~L~L~~~~~l~~~~~~~~ 862 (961)
+ ..+++|+.|++++|.+.. +|.. .++|+.|++++|.+.. ++ .+ ++|+.|++++|. +..++
T Consensus 273 ---~---~~~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~---~~~~~L~~L~Ls~N~-l~~lp---- 333 (454)
T 1jl5_A 273 ---P---ELPQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNK-LIELP---- 333 (454)
T ss_dssp ---C---CCCTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSC-CSCCC----
T ss_pred ---C---cccCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc---CCcCcCCEEECCCCc-ccccc----
Confidence 0 123678888888777665 4432 2577777777776543 22 23 477888887765 33332
Q ss_pred CCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCc--CCCCCCCCC-------------C
Q 002132 863 GIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLK--ALPDHIHQT-------------T 927 (961)
Q Consensus 863 ~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~--~lp~~~~~l-------------~ 927 (961)
..+++|+.|+++++ .++.++. .+++|+.|++++|+... .+|..+.++ +
T Consensus 334 -----~~~~~L~~L~L~~N-~l~~lp~-----------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~ 396 (454)
T 1jl5_A 334 -----ALPPRLERLIASFN-HLAEVPE-----------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396 (454)
T ss_dssp -----CCCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------
T ss_pred -----ccCCcCCEEECCCC-ccccccc-----------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccC
Confidence 23577888888776 4544332 36788888888876444 466666555 7
Q ss_pred CccEEEEccccccc
Q 002132 928 TLKELRIWACELLG 941 (961)
Q Consensus 928 ~L~~L~l~~~~~l~ 941 (961)
+|+.|++++|+...
T Consensus 397 ~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 397 NLKQLHVETNPLRE 410 (454)
T ss_dssp --------------
T ss_pred cCCEEECCCCcCCc
Confidence 78888888887654
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=2e-19 Score=204.55 Aligned_cols=309 Identities=18% Similarity=0.162 Sum_probs=226.8
Q ss_pred ceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccc
Q 002132 548 KVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEK 627 (961)
Q Consensus 548 ~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 627 (961)
.++++.+..+.....+. -.++|+.|.+.++.... ++ ..++.|++|++++|. +..+|..
T Consensus 72 ~l~~L~l~~~~l~~lp~---~~~~L~~L~l~~n~l~~------lp----~~~~~L~~L~l~~n~------l~~l~~~--- 129 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPE---LPPHLESLVASCNSLTE------LP----ELPQSLKSLLVDNNN------LKALSDL--- 129 (454)
T ss_dssp TCSEEECTTSCCSCCCS---CCTTCSEEECCSSCCSS------CC----CCCTTCCEEECCSSC------CSCCCSC---
T ss_pred CCCEEEecCCccccCCC---CcCCCCEEEccCCcCCc------cc----cccCCCcEEECCCCc------cCcccCC---
Confidence 34566666555443322 24789999999887542 12 235799999999998 6666542
Q ss_pred cCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCc
Q 002132 628 LVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDE 707 (961)
Q Consensus 628 L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 707 (961)
.++|++|++++|.++.+| .++++++|++|++++|. +..+|..+ .+|++|++++|. +..+| .++.+++|++|+
T Consensus 130 ~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~- 201 (454)
T 1jl5_A 130 PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIY- 201 (454)
T ss_dssp CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEE-
T ss_pred CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEE-
Confidence 269999999999999999 59999999999999998 66788754 589999999996 45577 689999999988
Q ss_pred eEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHH
Q 002132 708 FHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLL 787 (961)
Q Consensus 708 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 787 (961)
...+.+.+. +.. ..+|+.|++.++... .++ .+..+++|+.|+++.|..... +
T Consensus 202 ---l~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~lp--------~~~~l~~L~~L~l~~N~l~~l------------~ 253 (454)
T 1jl5_A 202 ---ADNNSLKKL-PDL---PLSLESIVAGNNILE-ELP--------ELQNLPFLTTIYADNNLLKTL------------P 253 (454)
T ss_dssp ---CCSSCCSSC-CCC---CTTCCEEECCSSCCS-SCC--------CCTTCTTCCEEECCSSCCSSC------------C
T ss_pred ---CCCCcCCcC-CCC---cCcccEEECcCCcCC-ccc--------ccCCCCCCCEEECCCCcCCcc------------c
Confidence 555554432 221 247788888777543 332 256788999999998765421 0
Q ss_pred hhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccCCccc
Q 002132 788 EALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEII 867 (961)
Q Consensus 788 ~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 867 (961)
..+++|+.|++++|.+.. +|.+ +++|+.|++++|.+.+ +|.+ .++|+.|++++|. +..++.
T Consensus 254 ---~~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~--~~~L~~L~l~~N~-l~~i~~-------- 314 (454)
T 1jl5_A 254 ---DLPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL--PPNLYYLNASSNE-IRSLCD-------- 314 (454)
T ss_dssp ---SCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC--CTTCCEEECCSSC-CSEECC--------
T ss_pred ---ccccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc--CCcCCEEECcCCc-CCcccC--------
Confidence 124799999999999887 7775 4799999999997654 2322 2689999999987 444431
Q ss_pred CcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEEEEccccccc--cccc
Q 002132 868 DAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELLG--KHYR 945 (961)
Q Consensus 868 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~--~~~~ 945 (961)
..++|+.|+++++ .+..++. .+++|+.|++++|. ++.+|. .+++|+.|++++|+... .++.
T Consensus 315 -~~~~L~~L~Ls~N-~l~~lp~-----------~~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 315 -LPPSLEELNVSNN-KLIELPA-----------LPPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp -CCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred -CcCcCCEEECCCC-ccccccc-----------cCCcCCEEECCCCc-cccccc---hhhhccEEECCCCCCCcCCCChH
Confidence 2258999999987 4554432 47899999999995 788988 46999999999998766 5555
Q ss_pred CCCCc
Q 002132 946 GGTEK 950 (961)
Q Consensus 946 ~~~~~ 950 (961)
....+
T Consensus 378 ~l~~L 382 (454)
T 1jl5_A 378 SVEDL 382 (454)
T ss_dssp TCCEE
T ss_pred HHHhh
Confidence 54433
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=203.29 Aligned_cols=258 Identities=20% Similarity=0.221 Sum_probs=131.1
Q ss_pred CceeEEecCCCCCCCCccccccCc-cccccCccceEEecCCcccccc-hhhhccCCCcEEeecCcccccccchh-hhccc
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPR-NIEKLVHLRYLNLSCQNIRKLP-ETLCELYNLEKLYITRCLYLEELPEG-IGKLI 676 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~ 676 (961)
+.|++|++++|. +..+|. .+.++++|++|+|++|.++.++ ..+.++++|++|++++|. +..+|.. +.+++
T Consensus 52 ~~L~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNR------ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCT
T ss_pred ccCcEEECCCCc------CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCc
Confidence 356666666665 555544 5566666666666666666553 346666666666666665 4445443 55666
Q ss_pred CCceeecCCccccccccc--cCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccc
Q 002132 677 NMKHLLNYRTDSLRYMPV--GIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLE 754 (961)
Q Consensus 677 ~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~ 754 (961)
+|++|++++|. +..+|. .++.+++|++|+ +.++.....++
T Consensus 125 ~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~----------------------------l~~n~~~~~~~--------- 166 (353)
T 2z80_A 125 SLTFLNLLGNP-YKTLGETSLFSHLTKLQILR----------------------------VGNMDTFTKIQ--------- 166 (353)
T ss_dssp TCSEEECTTCC-CSSSCSSCSCTTCTTCCEEE----------------------------EEESSSCCEEC---------
T ss_pred cCCEEECCCCC-CcccCchhhhccCCCCcEEE----------------------------CCCCccccccC---------
Confidence 66666666653 233332 233333333333 22221100000
Q ss_pred cCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcC
Q 002132 755 LDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQL 834 (961)
Q Consensus 755 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l 834 (961)
...+..+++|++|++++|.+....|.++..+++|+.|+|++|.+....
T Consensus 167 --------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 167 --------------------------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp --------------------------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred --------------------------------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 112333445555555555554433555555556666666655442211
Q ss_pred CC-CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceeccccc
Q 002132 835 PP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARC 913 (961)
Q Consensus 835 ~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 913 (961)
+. ++.+++|+.|++++|. ++..+...... ....+.++.+++.++ .+..-... ..+..+..+++|+.|++++|
T Consensus 215 ~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~--~~~~~~l~~l~L~~~-~l~~~~l~---~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTD-LDTFHFSELST--GETNSLIKKFTFRNV-KITDESLF---QVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp HHHHHHTTTEEEEEEESCB-CTTCCCC--------CCCCCCEEEEESC-BCCHHHHH---HHHHHHHTCTTCCEEECCSS
T ss_pred hhhhhhcccccEEECCCCc-ccccccccccc--ccccchhhccccccc-cccCcchh---hhHHHHhcccCCCEEECCCC
Confidence 11 2335556666665554 22221110000 023344555555544 12111000 00111336889999999988
Q ss_pred ccCcCCCCCC-CCCCCccEEEEcccccccc
Q 002132 914 PKLKALPDHI-HQTTTLKELRIWACELLGK 942 (961)
Q Consensus 914 ~~L~~lp~~~-~~l~~L~~L~l~~~~~l~~ 942 (961)
. ++.+|..+ ..+++|+.|++++|+....
T Consensus 288 ~-l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 288 Q-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred C-CCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 5 77888764 6789999999999886544
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=6.7e-19 Score=206.24 Aligned_cols=261 Identities=20% Similarity=0.206 Sum_probs=165.1
Q ss_pred ceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCce
Q 002132 601 SLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKH 680 (961)
Q Consensus 601 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 680 (961)
.+++|++++|. +..+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++|. +..+|. .+++|++
T Consensus 41 ~l~~L~ls~n~------L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGESG------LTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLE 105 (622)
T ss_dssp CCCEEECCSSC------CSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCE
T ss_pred CCcEEEecCCC------cCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCE
Confidence 35566666655 555555444 566666666666665555 35556666666655 445554 4556666
Q ss_pred eecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCC
Q 002132 681 LLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKY 760 (961)
Q Consensus 681 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~ 760 (961)
|++++|. +..+|. .+++|+.|+ ...+.+... +. .+++|+.|++.+|.... ++. ...+
T Consensus 106 L~Ls~N~-l~~l~~---~l~~L~~L~----L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~----------~~~~ 162 (622)
T 3g06_A 106 LSIFSNP-LTHLPA---LPSGLCKLW----IFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA----------LPSE 162 (622)
T ss_dssp EEECSCC-CCCCCC---CCTTCCEEE----CCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC----------CCTT
T ss_pred EECcCCc-CCCCCC---CCCCcCEEE----CCCCCCCcC-CC---CCCCCCEEECcCCcCCC-cCC----------ccCC
Confidence 6666553 334443 344455554 333333221 11 13555556555553322 111 2356
Q ss_pred CCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCc
Q 002132 761 LSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKL 840 (961)
Q Consensus 761 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 840 (961)
|+.|+++.|.... ++ ..+++|+.|++++|.+.. +|.. +++|+.|++++|.+. .+|. .+
T Consensus 163 L~~L~L~~N~l~~------------l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~--~~ 220 (622)
T 3g06_A 163 LCKLWAYNNQLTS------------LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA--LP 220 (622)
T ss_dssp CCEEECCSSCCSC------------CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CC
T ss_pred CCEEECCCCCCCC------------Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC--CC
Confidence 7777777765542 01 346789999999988877 7763 478999999998765 3443 35
Q ss_pred cccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCC
Q 002132 841 QSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALP 920 (961)
Q Consensus 841 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp 920 (961)
++|+.|+|++|. ++.++ ..+++|+.|+++++ .++.++. .+++|+.|++++|. ++.+|
T Consensus 221 ~~L~~L~Ls~N~-L~~lp---------~~l~~L~~L~Ls~N-~L~~lp~-----------~~~~L~~L~Ls~N~-L~~lp 277 (622)
T 3g06_A 221 SGLKELIVSGNR-LTSLP---------VLPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRNQ-LTRLP 277 (622)
T ss_dssp TTCCEEECCSSC-CSCCC---------CCCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSSC-CCSCC
T ss_pred CCCCEEEccCCc-cCcCC---------CCCCcCcEEECCCC-CCCcCCc-----------ccccCcEEeCCCCC-CCcCC
Confidence 789999999886 55444 35688999999987 5665543 46889999999984 77899
Q ss_pred CCCCCCCCccEEEEcccccccccc
Q 002132 921 DHIHQTTTLKELRIWACELLGKHY 944 (961)
Q Consensus 921 ~~~~~l~~L~~L~l~~~~~l~~~~ 944 (961)
..+.++++|+.|++++|+.....+
T Consensus 278 ~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp GGGGGSCTTCEEECCSCCCCHHHH
T ss_pred HHHhhccccCEEEecCCCCCCcCH
Confidence 888889999999999998765544
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=6.4e-19 Score=211.76 Aligned_cols=142 Identities=22% Similarity=0.201 Sum_probs=114.1
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCc-cccccCccceEEecCCcccccch-h
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPR-NIEKLVHLRYLNLSCQNIRKLPE-T 647 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~Lp~-~ 647 (961)
+.++.|++++|.+. .+++..|.++++|++|+|++|. +..+|+ .|.+|++|++|+|++|.++.+|. .
T Consensus 52 ~~~~~LdLs~N~i~------~l~~~~f~~l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR------HLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCCCEEEeeCCCCC------CCCHHHHhCCCCCCEEECCCCc------CCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 47999999998754 3455568999999999999998 888865 68999999999999999999986 4
Q ss_pred hhccCCCcEEeecCcccccccch-hhhcccCCceeecCCccccc-cccccCCCCCCCCcCCceEeCCCCCcCCCcccccc
Q 002132 648 LCELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTDSLR-YMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFE 725 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~ 725 (961)
|.+|++|++|++++|. +..+|. .+++|++|++|++++|.... .+|..++.+++|++|+ ...+.+....+..+.
T Consensus 120 f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~----L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD----LSSNKIQSIYCTDLR 194 (635)
T ss_dssp GTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE----CCSSCCCEECGGGGH
T ss_pred hcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc----ccCcccccccccccc
Confidence 7999999999999998 666765 58999999999999996433 3577789999999988 555554443333343
Q ss_pred ccc
Q 002132 726 SLK 728 (961)
Q Consensus 726 ~L~ 728 (961)
.+.
T Consensus 195 ~L~ 197 (635)
T 4g8a_A 195 VLH 197 (635)
T ss_dssp HHH
T ss_pred chh
Confidence 333
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=5.9e-19 Score=190.81 Aligned_cols=124 Identities=18% Similarity=0.159 Sum_probs=65.2
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc---CccccccCccceEEecCCcccccch
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI---PRNIEKLVHLRYLNLSCQNIRKLPE 646 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l---p~~i~~L~~Lr~L~L~~~~i~~Lp~ 646 (961)
++|+.|.+.++.+. .++..+|..+++|++|+|++|. +..+ |..+..+++|++|+|++|.++.+|.
T Consensus 28 ~~l~~L~L~~n~l~------~i~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~ 95 (306)
T 2z66_A 28 SSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSSNG------LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 95 (306)
T ss_dssp TTCCEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSC------CCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE
T ss_pred CCCCEEECCCCccC------ccCHhHhhccccCCEEECCCCc------cCcccCcccccccccccCEEECCCCccccChh
Confidence 45566666555432 2233345556666666666655 3322 3444555666666666666666665
Q ss_pred hhhccCCCcEEeecCcccccccc--hhhhcccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 647 TLCELYNLEKLYITRCLYLEELP--EGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 647 ~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
.+.++++|++|++++|. +..+| ..+..+++|++|++++|......|..+..+++|++|+
T Consensus 96 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp EEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred hcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 56666666666666655 33343 2455566666666665543333333344444444443
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.2e-18 Score=199.40 Aligned_cols=241 Identities=20% Similarity=0.184 Sum_probs=140.9
Q ss_pred CccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCcccccc-hhh
Q 002132 571 RIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKLP-ETL 648 (961)
Q Consensus 571 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~Lp-~~i 648 (961)
..+.+.+.+.... .++.. -.+.|++|+|++|. +..+ |..+.++++|++|+|++|.|+.++ ..+
T Consensus 55 ~~~~v~c~~~~l~------~iP~~---~~~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 119 (452)
T 3zyi_A 55 QFSKVVCTRRGLS------EVPQG---IPSNTRYLNLMENN------IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119 (452)
T ss_dssp SSCEEECCSSCCS------SCCSC---CCTTCSEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CCcEEEECCCCcC------ccCCC---CCCCccEEECcCCc------CceECHHHcCCCCCCCEEECCCCccCCcChhhc
Confidence 3456666655432 12221 23688999999998 6665 567889999999999999988775 668
Q ss_pred hccCCCcEEeecCcccccccch-hhhcccCCceeecCCccccccccc-cCCCCCCCCcCCceEeCCC-CCcCCCcccccc
Q 002132 649 CELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTDSLRYMPV-GIGRLTGLRTLDEFHVIGG-GGVDGRKACWFE 725 (961)
Q Consensus 649 ~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~-~~~~~~~~~~l~ 725 (961)
.++++|++|+|++|. +..+|. .+..+++|++|++++|.. ..+|. .+.++++|+.|+ ... +.+.......+.
T Consensus 120 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~----l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 120 NGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLD----LGELKKLEYISEGAFE 193 (452)
T ss_dssp TTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEE----CCCCTTCCEECTTTTT
T ss_pred cCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEe----CCCCCCccccChhhcc
Confidence 889999999999988 556655 478899999999999864 44443 577788888776 332 222222222455
Q ss_pred cccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeec
Q 002132 726 SLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYR 805 (961)
Q Consensus 726 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 805 (961)
.+++|+.|++.++.... ++ .+..+.+|+.|++++|.... ..+..+..+++|+.|++++|.
T Consensus 194 ~l~~L~~L~L~~n~l~~-~~--------~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKD-MP--------NLTPLVGLEELEMSGNHFPE-----------IRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp TCTTCCEEECTTSCCSS-CC--------CCTTCTTCCEEECTTSCCSE-----------ECGGGGTTCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCcccc-cc--------cccccccccEEECcCCcCcc-----------cCcccccCccCCCEEEeCCCc
Confidence 55556555555543322 11 13344455555555443321 012234444455555555555
Q ss_pred CCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeeccccc
Q 002132 806 GNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 806 ~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 852 (961)
+....|..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 4442344444455555555555544332222 4445555555555443
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=197.21 Aligned_cols=242 Identities=21% Similarity=0.177 Sum_probs=146.3
Q ss_pred CccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCcccccc-hhh
Q 002132 571 RIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIRKLP-ETL 648 (961)
Q Consensus 571 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~Lp-~~i 648 (961)
..+.+.+.+.... .+|.. -.+.+++|+|++|. +..++ ..+.++++|++|+|++|.++.++ ..+
T Consensus 44 ~~~~v~c~~~~l~------~iP~~---~~~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLR------EVPDG---ISTNTRLLNLHENQ------IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108 (440)
T ss_dssp TSCEEECCSCCCS------SCCSC---CCTTCSEEECCSCC------CCEECTTTTSSCSSCCEEECCSSCCCEECGGGG
T ss_pred CCCEEEeCCCCcC------cCCCC---CCCCCcEEEccCCc------CCeeCHHHhhCCCCCCEEECCCCcCCccChhhc
Confidence 3556776665432 22222 23678999999998 66665 67889999999999999998775 568
Q ss_pred hccCCCcEEeecCcccccccch-hhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCC-CCcCCCccccccc
Q 002132 649 CELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGG-GGVDGRKACWFES 726 (961)
Q Consensus 649 ~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~-~~~~~~~~~~l~~ 726 (961)
.++++|++|+|++|. +..+|. .+..+++|++|++++|......+..+..+++|++|+ ... +.+.......+..
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~----l~~~~~l~~i~~~~~~~ 183 (440)
T 3zyj_A 109 NGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD----LGELKRLSYISEGAFEG 183 (440)
T ss_dssp TTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE----CCCCTTCCEECTTTTTT
T ss_pred cCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC----CCCCCCcceeCcchhhc
Confidence 899999999999997 666665 588899999999999864333334577888888877 333 2222222234555
Q ss_pred ccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecC
Q 002132 727 LKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRG 806 (961)
Q Consensus 727 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 806 (961)
+++|+.|++.++.... ++ .+..+.+|+.|+++.|..... ....+..+++|+.|++++|.+
T Consensus 184 l~~L~~L~L~~n~l~~-~~--------~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLRE-IP--------NLTPLIKLDELDLSGNHLSAI-----------RPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp CSSCCEEECTTSCCSS-CC--------CCTTCSSCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECTTCCC
T ss_pred ccccCeecCCCCcCcc-cc--------ccCCCcccCEEECCCCccCcc-----------ChhhhccCccCCEEECCCCce
Confidence 6666666665554321 11 234445555555555443210 122344455555555555555
Q ss_pred CCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeeccccc
Q 002132 807 NTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 807 ~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 852 (961)
....|..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred eEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 543344445555555555555544433222 4455555555555554
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.5e-18 Score=187.58 Aligned_cols=99 Identities=20% Similarity=0.191 Sum_probs=64.3
Q ss_pred CceeEEecCCCCCCCCccccccCcc-ccccCccceEEecCCccccc---chhhhccCCCcEEeecCcccccccchhhhcc
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPRN-IEKLVHLRYLNLSCQNIRKL---PETLCELYNLEKLYITRCLYLEELPEGIGKL 675 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~L---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 675 (961)
+.|++|+|++|. +..+|.. +.++++|++|+|++|.++.+ |..+..+++|++|++++|. +..+|..+..+
T Consensus 28 ~~l~~L~L~~n~------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNK------LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSSC------CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETC
T ss_pred CCCCEEECCCCc------cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCC
Confidence 567777777776 6666654 56777777777777776644 5666677777777777776 55667667777
Q ss_pred cCCceeecCCcccccccc--ccCCCCCCCCcCC
Q 002132 676 INMKHLLNYRTDSLRYMP--VGIGRLTGLRTLD 706 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~ 706 (961)
++|++|++++|. +..++ ..+..+++|++|+
T Consensus 101 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 101 EQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp TTCCEEECTTSE-EESSTTTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCc-ccccccchhhhhccCCCEEE
Confidence 777777777764 23333 2344444444444
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.4e-19 Score=196.46 Aligned_cols=276 Identities=14% Similarity=0.111 Sum_probs=159.6
Q ss_pred hhhHHHhhcCCceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCcccccchhhhccCCCcEEeecCccccccc
Q 002132 590 EILEELFRESTSLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEEL 668 (961)
Q Consensus 590 ~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~l 668 (961)
..+..++..+++|++|+|++|. +..++ ..+.++++|++|+|++|.++.++. +..+++|++|++++|. +..+
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l 95 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNP------LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQEL 95 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSC------CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEE
T ss_pred hhHHHHhccCCCCCEEECcCCc------cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccc
Confidence 3455566777788888888887 66654 567888888888888888887665 8888888888888887 5555
Q ss_pred chhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChh
Q 002132 669 PEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVG 748 (961)
Q Consensus 669 p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~ 748 (961)
| .+++|++|++++|.. ..++. ..+++|++|+ ...+.+....+..+..+++|+.|++.++......
T Consensus 96 ~----~~~~L~~L~l~~n~l-~~~~~--~~~~~L~~L~----l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---- 160 (317)
T 3o53_A 96 L----VGPSIETLHAANNNI-SRVSC--SRGQGKKNIY----LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN---- 160 (317)
T ss_dssp E----ECTTCCEEECCSSCC-SEEEE--CCCSSCEEEE----CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE----
T ss_pred c----CCCCcCEEECCCCcc-CCcCc--cccCCCCEEE----CCCCCCCCccchhhhccCCCCEEECCCCCCCccc----
Confidence 4 347888888888853 33332 2245566665 4445444433444455555555555444322110
Q ss_pred hhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhC-CCCCCCceEEEeeecCCCCCCCccccccCccEEEEeC
Q 002132 749 EAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEAL-QPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYG 827 (961)
Q Consensus 749 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~ 827 (961)
+..+ ..+++|++|++++|.+.. +|... .+++|+.|+|++
T Consensus 161 --------------------------------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-~l~~L~~L~Ls~ 200 (317)
T 3o53_A 161 --------------------------------------FAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSS 200 (317)
T ss_dssp --------------------------------------GGGGGGGTTTCCEEECTTSCCCE-EECCC-CCTTCCEEECCS
T ss_pred --------------------------------------HHHHhhccCcCCEEECCCCcCcc-ccccc-ccccCCEEECCC
Confidence 0111 124556666666666554 33322 366666666666
Q ss_pred CCCCCcCCCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccc-cccccccccccccccccccccc
Q 002132 828 CENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLEL-EEWDYGITRTGNTVINIMPRLS 906 (961)
Q Consensus 828 ~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L-~~~~~~~~~~~~~~~~~~p~L~ 906 (961)
|.+....+.+..+++|+.|+|++|. ++.++..+ ..+++|+.|++++++-. ...+.. +..+++|+
T Consensus 201 N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~------~~l~~L~~L~l~~N~~~~~~~~~~--------~~~~~~L~ 265 (317)
T 3o53_A 201 NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKAL------RFSQNLEHFDLRGNGFHCGTLRDF--------FSKNQRVQ 265 (317)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTC------CCCTTCCEEECTTCCCBHHHHHHH--------HHTCHHHH
T ss_pred CcCCcchhhhcccCcccEEECcCCc-ccchhhHh------hcCCCCCEEEccCCCccCcCHHHH--------Hhccccce
Confidence 6655444446666666666666665 44554432 35566777777666321 011111 23567777
Q ss_pred eecccccccCcCCCCCCCCCCCccEEEEccccccccc
Q 002132 907 SLTIARCPKLKALPDHIHQTTTLKELRIWACELLGKH 943 (961)
Q Consensus 907 ~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l~~~ 943 (961)
.|++.+|+.++..+..-...+.+....-..|..+...
T Consensus 266 ~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~ 302 (317)
T 3o53_A 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302 (317)
T ss_dssp HHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTTT
T ss_pred EEECCCchhccCCchhccCCCceecccceeeccCChh
Confidence 7777777666654432222233333333345555443
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=3.4e-21 Score=221.80 Aligned_cols=368 Identities=15% Similarity=0.082 Sum_probs=229.4
Q ss_pred ccceeEEEEEecccccc--ccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-C
Q 002132 546 DEKVRHLMLIIGREASF--RVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-P 622 (961)
Q Consensus 546 ~~~~r~lsl~~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p 622 (961)
+..+++|.+..+..... ...+..+++|++|.+.++.+... ....++..+..+++|++|+|++|. +... +
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--~~~~l~~~l~~~~~L~~L~Ls~n~------l~~~~~ 73 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--RCKDISSALRVNPALAELNLRSNE------LGDVGV 73 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH--HHHHHHHHHHTCTTCCEEECTTCC------CHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH--HHHHHHHHHHhCCCcCEEeCCCCc------CChHHH
Confidence 34677888877765431 22256788999999988874311 112345567888999999999987 4431 2
Q ss_pred ccc-cccC----ccceEEecCCccc-----ccchhhhccCCCcEEeecCcccccccchhhh-----cccCCceeecCCcc
Q 002132 623 RNI-EKLV----HLRYLNLSCQNIR-----KLPETLCELYNLEKLYITRCLYLEELPEGIG-----KLINMKHLLNYRTD 687 (961)
Q Consensus 623 ~~i-~~L~----~Lr~L~L~~~~i~-----~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-----~L~~L~~L~l~~~~ 687 (961)
..+ ..+. +|++|+|++|.++ .+|..+.++++|++|++++|......+..+. .+++|++|++++|.
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 222 2344 6999999999887 5688889999999999999884333333333 25579999999886
Q ss_pred ccc----cccccCCCCCCCCcCCceEeCCCCCcCCCcccccc-----cccCCCcCCccccccCCCCCChhhhhccccCCC
Q 002132 688 SLR----YMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFE-----SLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKK 758 (961)
Q Consensus 688 ~~~----~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~-----~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 758 (961)
... .++..+..+++|++|+ ...+.+.......+. ..++|+.|++.++..... ........+..+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~----L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---~~~~l~~~l~~~ 226 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELT----VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD---NCRDLCGIVASK 226 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEE----CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT---HHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhhCCCCCEEE----CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH---HHHHHHHHHHhC
Confidence 443 2345566778888887 555543222122222 144788888776644321 111122245577
Q ss_pred CCCCeEEEEeecCCCCCccCCcchHHHHHh-hCCCCCCCceEEEeeecCCCC----CCCccccccCccEEEEeCCCCCCc
Q 002132 759 KYLSCLRLSFDEKEQGGERRKNEDDQLLLE-ALQPPPDLKELEIRFYRGNTV----FPNWLMSLTNLRSLVLYGCENCEQ 833 (961)
Q Consensus 759 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~L~~~~~~~~ 833 (961)
++|+.|++++|.... .....+.. ....+++|++|++++|.+... +|..+..+++|+.|+|++|.+.+.
T Consensus 227 ~~L~~L~Ls~n~l~~-------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 227 ASLRELALGSNKLGD-------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp TTCCEEECCSSBCHH-------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred CCccEEeccCCcCCh-------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 899999998875431 11112222 334578999999999876652 455566789999999999876432
Q ss_pred CC----C--CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccce
Q 002132 834 LP----P--LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSS 907 (961)
Q Consensus 834 l~----~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~ 907 (961)
.+ . ....++|+.|++++|. +...+...+. ..+..+++|+.|+++++ .+.......- ........++|++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~-~~l~~~~~L~~L~Ls~n-~i~~~~~~~l--~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFS-SVLAQNRFLLELQISNN-RLEDAGVREL--CQGLGQPGSVLRV 374 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH-HHHHHCSSCCEEECCSS-BCHHHHHHHH--HHHHTSTTCCCCE
T ss_pred HHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHH-HHHhhCCCccEEEccCC-ccccccHHHH--HHHHcCCCCceEE
Confidence 11 1 1234689999999886 3322110000 11135689999999887 3443211100 0000012678999
Q ss_pred ecccccccCc-----CCCCCCCCCCCccEEEEccccccc
Q 002132 908 LTIARCPKLK-----ALPDHIHQTTTLKELRIWACELLG 941 (961)
Q Consensus 908 L~l~~c~~L~-----~lp~~~~~l~~L~~L~l~~~~~l~ 941 (961)
|++++|. ++ .+|..+..+++|++|++++|+...
T Consensus 375 L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 375 LWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp EECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred EECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 9999986 54 567666778999999999987643
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=1.8e-18 Score=184.92 Aligned_cols=202 Identities=18% Similarity=0.148 Sum_probs=113.3
Q ss_pred CCceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCccccc-chhhhccCCCcEEeecCccccccc-chhhhcc
Q 002132 599 STSLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIRKL-PETLCELYNLEKLYITRCLYLEEL-PEGIGKL 675 (961)
Q Consensus 599 ~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L 675 (961)
.+.|++|++++|. +..+| ..+..+++|++|+|++|.++.+ |..+.++++|++|++++|..+..+ |..+..+
T Consensus 31 ~~~l~~L~l~~n~------i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLHGNR------ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp CTTCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred CCCceEEEeeCCc------CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 4567777777776 55555 4567777777777777777765 556777777777777777534444 5566777
Q ss_pred cCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhcccc
Q 002132 676 INMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLEL 755 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l 755 (961)
++|++|++++|......|..+..+++|++|+ ...+.+....+.. +
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~~-------------------------------~ 149 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLY----LQDNALQALPDDT-------------------------------F 149 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEE----CCSSCCCCCCTTT-------------------------------T
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEE----CCCCcccccCHhH-------------------------------h
Confidence 7777777777754333344455555555555 3333222111111 2
Q ss_pred CCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCC
Q 002132 756 DKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLP 835 (961)
Q Consensus 756 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~ 835 (961)
..+++|+.|+++.|..... ....+..+++|+.|++++|.+....|.++..+++|+.|+|++|.+....+
T Consensus 150 ~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSV-----------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TTCTTCCEEECCSSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred ccCCCccEEECCCCccccc-----------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 2333444444443332210 01124445566666666666655335556666666666666665544332
Q ss_pred C-CCCccccceeeccccc
Q 002132 836 P-LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 836 ~-l~~l~~L~~L~L~~~~ 852 (961)
. ++.+++|+.|++++|+
T Consensus 219 ~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp HHHTTCTTCCEEECCSSC
T ss_pred HHcccCcccCEEeccCCC
Confidence 2 5566666666666655
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=3.3e-17 Score=191.89 Aligned_cols=254 Identities=18% Similarity=0.130 Sum_probs=153.7
Q ss_pred ceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccc
Q 002132 548 KVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEK 627 (961)
Q Consensus 548 ~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~ 627 (961)
.++.+.+.++.+...+..+. ++|+.|.+.++.+.. ++. .+++|++|+|++|. +..+|. .
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~------lp~----~l~~L~~L~Ls~N~------l~~lp~---~ 99 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS------LPA----LPPELRTLEVSGNQ------LTSLPV---L 99 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC------CCC----CCTTCCEEEECSCC------CSCCCC---C
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC------CCC----cCCCCCEEEcCCCc------CCcCCC---C
Confidence 35666666666554444343 788899888886531 121 56889999999888 777776 6
Q ss_pred cCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCc
Q 002132 628 LVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDE 707 (961)
Q Consensus 628 L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 707 (961)
+++|++|+|++|.++.+|. .+.+|++|++++|. +..+|.. +++|++|++++|. +..+|.. +.+|+.|.
T Consensus 100 l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~- 167 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLW- 167 (622)
T ss_dssp CTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEE-
T ss_pred CCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCCc---cCCCCEEE-
Confidence 7889999999988888887 67888999998887 6777764 4788899998885 4555543 34455554
Q ss_pred eEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHH
Q 002132 708 FHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLL 787 (961)
Q Consensus 708 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 787 (961)
...+.+... + ..+++|+.|++.+|.... ++. ...+|+.|+++.|.....
T Consensus 168 ---L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~----------~~~~L~~L~L~~N~l~~l------------- 216 (622)
T 3g06_A 168 ---AYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPT----------LPSELYKLWAYNNRLTSL------------- 216 (622)
T ss_dssp ---CCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC----------CCTTCCEEECCSSCCSSC-------------
T ss_pred ---CCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCC----------ccchhhEEECcCCccccc-------------
Confidence 334433321 1 234555556555554322 111 124566666655543320
Q ss_pred hhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccCCccc
Q 002132 788 EALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEII 867 (961)
Q Consensus 788 ~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 867 (961)
-..+++|+.|++++|.+.. +| ..+++|+.|+|++|.+. .+|. .+++|+.|+|++|. ++.++..+
T Consensus 217 --~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~-L~~lp~~l------ 280 (622)
T 3g06_A 217 --PALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQ-LTRLPESL------ 280 (622)
T ss_dssp --CCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSC-CCSCCGGG------
T ss_pred --CCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCC-CCcCCHHH------
Confidence 0123556666666666555 55 33456666666666544 3333 45566666666654 44443321
Q ss_pred CcCcccceeecccc
Q 002132 868 DAFPKLKSLTISSM 881 (961)
Q Consensus 868 ~~f~~L~~L~l~~~ 881 (961)
..+++|+.|+|+++
T Consensus 281 ~~l~~L~~L~L~~N 294 (622)
T 3g06_A 281 IHLSSETTVNLEGN 294 (622)
T ss_dssp GGSCTTCEEECCSC
T ss_pred hhccccCEEEecCC
Confidence 35566666666665
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=191.01 Aligned_cols=251 Identities=19% Similarity=0.173 Sum_probs=179.6
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCcccccchh-
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKLPET- 647 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~Lp~~- 647 (961)
++|+.|.+.++.+. .++...|..+++|++|++++|. +..+ |..++++++|++|+|++|.++.+|..
T Consensus 52 ~~L~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSNNRIT------YISNSDLQRCVNLQALVLTSNG------INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW 119 (353)
T ss_dssp TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred ccCcEEECCCCcCc------ccCHHHhccCCCCCEEECCCCc------cCccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence 47888888887643 2334457788889999998887 6666 45688888899999988888888776
Q ss_pred hhccCCCcEEeecCcccccccch--hhhcccCCceeecCCccccccc-cccCCCCCCCCcCCceEeCCCCCcCCCccccc
Q 002132 648 LCELYNLEKLYITRCLYLEELPE--GIGKLINMKHLLNYRTDSLRYM-PVGIGRLTGLRTLDEFHVIGGGGVDGRKACWF 724 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l 724 (961)
++++++|++|++++|. +..+|. .+.++++|++|++++|..+..+ |..++.+++|++|+ ...+.+....+..+
T Consensus 120 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~~l 194 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE----IDASDLQSYEPKSL 194 (353)
T ss_dssp HTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE----EEETTCCEECTTTT
T ss_pred hCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE----CCCCCcCccCHHHH
Confidence 7888889999998887 667776 6788888999988888544544 45678888888887 44444544445667
Q ss_pred ccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeee
Q 002132 725 ESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFY 804 (961)
Q Consensus 725 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 804 (961)
..+++|+.|++.++... ... ...+..+++|+.|+++.|........ ........+.++.++++++
T Consensus 195 ~~l~~L~~L~l~~n~l~----~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHI----LLL---EIFVDVTSSVECLELRDTDLDTFHFS--------ELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp TTCSEEEEEEEECSCST----THH---HHHHHHTTTEEEEEEESCBCTTCCCC--------------CCCCCCEEEEESC
T ss_pred hccccCCeecCCCCccc----cch---hhhhhhcccccEEECCCCcccccccc--------ccccccccchhhccccccc
Confidence 77788888877666531 111 11234467899999998876531100 0112334567888888887
Q ss_pred cCCC----CCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeeccccc
Q 002132 805 RGNT----VFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 805 ~~~~----~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 852 (961)
.+.. .+|.++..+++|+.|+|++|.+....+. ++++++|++|+|++|+
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 7654 2577788999999999999988743333 5899999999999987
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=9.4e-21 Score=218.09 Aligned_cols=363 Identities=17% Similarity=0.119 Sum_probs=235.0
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccccc-chhh
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKL-PETL 648 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~L-p~~i 648 (961)
++|+.|++.++... ......++..+++|++|+|++|. +++.....++..+..+++|++|+|++|.++.. +..+
T Consensus 3 ~~l~~L~Ls~~~l~-----~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCEELS-----DARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESCCCC-----HHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhhhcccC-----chhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 57889999887643 34455668899999999999998 22111225678888999999999999998742 3333
Q ss_pred -hccC----CCcEEeecCcccc----cccchhhhcccCCceeecCCcccccccccc-----CCCCCCCCcCCceEeCCCC
Q 002132 649 -CELY----NLEKLYITRCLYL----EELPEGIGKLINMKHLLNYRTDSLRYMPVG-----IGRLTGLRTLDEFHVIGGG 714 (961)
Q Consensus 649 -~~L~----~L~~L~L~~~~~l----~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-----i~~L~~L~~L~~~~~~~~~ 714 (961)
..+. +|++|++++|... ..+|..+.++++|++|++++|......+.. ...+++|++|+ ...+
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~----L~~n 152 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ----LEYC 152 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE----CTTS
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE----CCCC
Confidence 3455 7999999999844 257888999999999999999743222222 22356788887 5555
Q ss_pred CcCCCc----ccccccccCCCcCCccccccCCCCCChhhhhcccc-CCCCCCCeEEEEeecCCCCCccCCcchHHHHHhh
Q 002132 715 GVDGRK----ACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLEL-DKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEA 789 (961)
Q Consensus 715 ~~~~~~----~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 789 (961)
.+.... +..+..+++|+.|++.++...... .......+ ....+|+.|++++|.... .....+...
T Consensus 153 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~---~~~l~~~l~~~~~~L~~L~L~~n~l~~-------~~~~~l~~~ 222 (461)
T 1z7x_W 153 SLSAASCEPLASVLRAKPDFKELTVSNNDINEAG---VRVLCQGLKDSPCQLEALKLESCGVTS-------DNCRDLCGI 222 (461)
T ss_dssp CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH---HHHHHHHHHHSCCCCCEEECTTSCCBT-------THHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH---HHHHHHHHhcCCCCceEEEccCCCCcH-------HHHHHHHHH
Confidence 544322 334556788888888776532110 01111111 135689999999886542 123345666
Q ss_pred CCCCCCCceEEEeeecCCCCC-----CCccccccCccEEEEeCCCCCCc----CCC-CCCccccceeecccccCceEeCC
Q 002132 790 LQPPPDLKELEIRFYRGNTVF-----PNWLMSLTNLRSLVLYGCENCEQ----LPP-LGKLQSLEKLSLTIMRSVKRVGD 859 (961)
Q Consensus 790 l~~~~~L~~L~l~~~~~~~~l-----p~~~~~l~~L~~L~L~~~~~~~~----l~~-l~~l~~L~~L~L~~~~~l~~~~~ 859 (961)
+..+++|++|++++|.+.... +.+...+++|+.|+|++|.+... ++. +..+++|++|++++|. +...+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~ 301 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGA 301 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHH
Confidence 777899999999998765411 22233588999999999976542 333 6678999999999986 432221
Q ss_pred cccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcCC-----CCCCC-CCCCccEEE
Q 002132 860 ECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKAL-----PDHIH-QTTTLKELR 933 (961)
Q Consensus 860 ~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~l-----p~~~~-~l~~L~~L~ 933 (961)
..+........++|+.|++++|. +...... ..+..+..+++|++|++++|. +... ...+. ..++|+.|+
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~---~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCS-FTAACCS---HFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC-CBGGGHH---HHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHhccCCccceeeEcCCCC-CchHHHH---HHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEE
Confidence 11111000234799999999984 4332110 011123367999999999995 4422 11111 268999999
Q ss_pred Eccccccc----ccccCCCCcccceEEec
Q 002132 934 IWACELLG----KHYRGGTEKTGLKYHTF 958 (961)
Q Consensus 934 l~~~~~l~----~~~~~~~~~~~l~~~~~ 958 (961)
+++|.... .++......++|+.+.+
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 99997654 44444444566666554
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=5.1e-17 Score=185.09 Aligned_cols=97 Identities=21% Similarity=0.221 Sum_probs=76.3
Q ss_pred ceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccc-hhhhccCCCcEEeecCcccccccchhhhcccCCc
Q 002132 601 SLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLP-ETLCELYNLEKLYITRCLYLEELPEGIGKLINMK 679 (961)
Q Consensus 601 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 679 (961)
..+.++.++.. +..+|..+. .+|++|+|++|.|+.++ ..+.++++|++|+|++|......|..+.++++|+
T Consensus 44 ~~~~v~c~~~~------l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 44 QFSKVICVRKN------LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115 (440)
T ss_dssp TSCEEECCSCC------CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred CCCEEEeCCCC------cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCC
Confidence 45678877776 888888765 68999999999999775 6789999999999999984444456788999999
Q ss_pred eeecCCccccccccc-cCCCCCCCCcCC
Q 002132 680 HLLNYRTDSLRYMPV-GIGRLTGLRTLD 706 (961)
Q Consensus 680 ~L~l~~~~~~~~~p~-~i~~L~~L~~L~ 706 (961)
+|++++|. +..+|. .+..+++|++|+
T Consensus 116 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 116 TLELFDNR-LTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp EEECCSSC-CSSCCTTTSCSCSSCCEEE
T ss_pred EEECCCCc-CCeeCHhHhhccccCceee
Confidence 99999986 445554 467777777776
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=5.7e-17 Score=185.41 Aligned_cols=97 Identities=25% Similarity=0.278 Sum_probs=76.2
Q ss_pred ceeEEecCCCCCCCCccccccCccccccCccceEEecCCccccc-chhhhccCCCcEEeecCcccccccchhhhcccCCc
Q 002132 601 SLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKL-PETLCELYNLEKLYITRCLYLEELPEGIGKLINMK 679 (961)
Q Consensus 601 ~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 679 (961)
..+.++.++.. +..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|......|..+.++++|+
T Consensus 55 ~~~~v~c~~~~------l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 55 QFSKVVCTRRG------LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126 (452)
T ss_dssp SSCEEECCSSC------CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCcEEEECCCC------cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC
Confidence 45678877776 788887665 6899999999999977 56789999999999999984444457788999999
Q ss_pred eeecCCcccccccccc-CCCCCCCCcCC
Q 002132 680 HLLNYRTDSLRYMPVG-IGRLTGLRTLD 706 (961)
Q Consensus 680 ~L~l~~~~~~~~~p~~-i~~L~~L~~L~ 706 (961)
+|++++|. +..+|.. ++.+++|++|+
T Consensus 127 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 127 TLELFDNW-LTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp EEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred EEECCCCc-CCccChhhhcccCCCCEEE
Confidence 99999986 4445443 66677777776
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=8e-18 Score=179.81 Aligned_cols=205 Identities=20% Similarity=0.178 Sum_probs=152.1
Q ss_pred CCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCc-cccc-c
Q 002132 569 VKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQN-IRKL-P 645 (961)
Q Consensus 569 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~-i~~L-p 645 (961)
.++|+.|.+.++.+. .+++..|..+++|++|++++|. +..+ |..+..+++|++|+|++|. ++.+ |
T Consensus 31 ~~~l~~L~l~~n~i~------~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS------HVPAASFRACRNLTILWLHSNV------LARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CTTCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCCceEEEeeCCcCC------ccCHHHcccCCCCCEEECCCCc------cceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 468999999988753 2344557889999999999998 6666 6789999999999999997 8887 6
Q ss_pred hhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCcccccccc-ccCCCCCCCCcCCceEeCCCCCcCCCccccc
Q 002132 646 ETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMP-VGIGRLTGLRTLDEFHVIGGGGVDGRKACWF 724 (961)
Q Consensus 646 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l 724 (961)
..+.++++|++|++++|......|..+.++++|++|++++|.. ..+| ..++.+++|++|+ ...+.+....+..+
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLF----LHGNRISSVPERAF 173 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE----CCSSCCCEECTTTT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEE----CCCCcccccCHHHh
Confidence 7799999999999999985444477789999999999999964 4444 4478888888887 45543332222223
Q ss_pred ccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeee
Q 002132 725 ESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFY 804 (961)
Q Consensus 725 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 804 (961)
.. +++|+.|+++.|.... ..+..+..+++|+.|++++|
T Consensus 174 ~~-------------------------------l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 174 RG-------------------------------LHSLDRLLLHQNRVAH-----------VHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp TT-------------------------------CTTCCEEECCSSCCCE-----------ECTTTTTTCTTCCEEECCSS
T ss_pred cC-------------------------------ccccCEEECCCCcccc-----------cCHhHccCcccccEeeCCCC
Confidence 33 3445555555443321 01235667789999999999
Q ss_pred cCCCCCCCccccccCccEEEEeCCCCCC
Q 002132 805 RGNTVFPNWLMSLTNLRSLVLYGCENCE 832 (961)
Q Consensus 805 ~~~~~lp~~~~~l~~L~~L~L~~~~~~~ 832 (961)
.+....+.++..+++|+.|+|++|.+..
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCCcCCHHHcccCcccCEEeccCCCccC
Confidence 9888334567889999999999997643
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=6.1e-19 Score=191.43 Aligned_cols=266 Identities=12% Similarity=0.070 Sum_probs=193.5
Q ss_pred CceeEEecCCCCCCCCccccccCc-cccccCccceEEecCCcccccc-hhhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPR-NIEKLVHLRYLNLSCQNIRKLP-ETLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
..++.++++.+. +...+. .+..+++|++|+|++|.++.++ ..+.++++|++|++++|. +..++. +..+++
T Consensus 10 ~~l~i~~ls~~~------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~ 81 (317)
T 3o53_A 10 NRYKIEKVTDSS------LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLST 81 (317)
T ss_dssp TEEEEESCCTTT------HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTT
T ss_pred CceeEeeccccc------hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCC
Confidence 456777777776 554443 3456779999999999999775 679999999999999998 554554 899999
Q ss_pred CceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCC
Q 002132 678 MKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDK 757 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~ 757 (961)
|++|++++|. +..+| ..++|++|+ ...+.+..... ..
T Consensus 82 L~~L~Ls~n~-l~~l~----~~~~L~~L~----l~~n~l~~~~~----------------------------------~~ 118 (317)
T 3o53_A 82 LRTLDLNNNY-VQELL----VGPSIETLH----AANNNISRVSC----------------------------------SR 118 (317)
T ss_dssp CCEEECCSSE-EEEEE----ECTTCCEEE----CCSSCCSEEEE----------------------------------CC
T ss_pred CCEEECcCCc-ccccc----CCCCcCEEE----CCCCccCCcCc----------------------------------cc
Confidence 9999999995 44443 235666665 33332221110 11
Q ss_pred CCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccc-cccCccEEEEeCCCCCCcCCC
Q 002132 758 KKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLM-SLTNLRSLVLYGCENCEQLPP 836 (961)
Q Consensus 758 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~l~~ 836 (961)
+++|+.|+++.|..... ....+..+++|+.|++++|.+....|..+. .+++|+.|+|++|.+.. ++.
T Consensus 119 ~~~L~~L~l~~N~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~ 186 (317)
T 3o53_A 119 GQGKKNIYLANNKITML-----------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG 186 (317)
T ss_dssp CSSCEEEECCSSCCCSG-----------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC
T ss_pred cCCCCEEECCCCCCCCc-----------cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc
Confidence 34566666666554320 122345578999999999998874455554 78999999999998754 466
Q ss_pred CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccC
Q 002132 837 LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKL 916 (961)
Q Consensus 837 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L 916 (961)
...+++|+.|+|++|. ++.++..+ ..+++|+.|+++++ .++.++... ..+++|+.|++++|+..
T Consensus 187 ~~~l~~L~~L~Ls~N~-l~~l~~~~------~~l~~L~~L~L~~N-~l~~l~~~~--------~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNK-LAFMGPEF------QSAAGVTWISLRNN-KLVLIEKAL--------RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCCTTCCEEECCSSC-CCEECGGG------GGGTTCSEEECTTS-CCCEECTTC--------CCCTTCCEEECTTCCCB
T ss_pred ccccccCCEEECCCCc-CCcchhhh------cccCcccEEECcCC-cccchhhHh--------hcCCCCCEEEccCCCcc
Confidence 6679999999999997 66776543 47899999999998 566665433 37899999999999855
Q ss_pred -cCCCCCCCCCCCccEEEEcccccccccc
Q 002132 917 -KALPDHIHQTTTLKELRIWACELLGKHY 944 (961)
Q Consensus 917 -~~lp~~~~~l~~L~~L~l~~~~~l~~~~ 944 (961)
..+|..+..+++|+.|++.+|+.+....
T Consensus 251 ~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred CcCHHHHHhccccceEEECCCchhccCCc
Confidence 3667777788999999999888776544
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=7.4e-19 Score=209.17 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=73.3
Q ss_pred CCCCCceEEEeeecCCCCCCCccc-cccCccEEEEeCCC---CCCcCC------C-CCCccccceeecccccCceEeCCc
Q 002132 792 PPPDLKELEIRFYRGNTVFPNWLM-SLTNLRSLVLYGCE---NCEQLP------P-LGKLQSLEKLSLTIMRSVKRVGDE 860 (961)
Q Consensus 792 ~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~~~~---~~~~l~------~-l~~l~~L~~L~L~~~~~l~~~~~~ 860 (961)
.+++|++|++..+.+....+..+. .+++|+.|+|++|. .....| . +.++++|+.|+++.|.. .+...
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~--~l~~~ 453 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG--GLTDL 453 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG--GCCHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC--CccHH
Confidence 356677777755554432233343 36677777776332 222211 1 33467777777765442 01110
Q ss_pred ccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCc--CCCCCCCCCCCccEEEEcccc
Q 002132 861 CLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLK--ALPDHIHQTTTLKELRIWACE 938 (961)
Q Consensus 861 ~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~--~lp~~~~~l~~L~~L~l~~~~ 938 (961)
... .....+|+|+.|+++++. +...... .....+++|++|+|++|+ ++ .++..+..+++|+.|++++|+
T Consensus 454 ~~~-~~~~~~~~L~~L~L~~n~-l~~~~~~------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 454 GLS-YIGQYSPNVRWMLLGYVG-ESDEGLM------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHH-HHHHSCTTCCEEEECSCC-SSHHHHH------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHH-HHHHhCccceEeeccCCC-CCHHHHH------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 000 000246777777777663 3221110 012357888888888887 43 234333457888888888888
Q ss_pred cccc
Q 002132 939 LLGK 942 (961)
Q Consensus 939 ~l~~ 942 (961)
....
T Consensus 525 it~~ 528 (592)
T 3ogk_B 525 ASMT 528 (592)
T ss_dssp CCTT
T ss_pred CCHH
Confidence 4433
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=7.9e-19 Score=208.93 Aligned_cols=377 Identities=12% Similarity=0.045 Sum_probs=235.4
Q ss_pred cceeEEEEEeccccc-ccccccc-CCC-ccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCc
Q 002132 547 EKVRHLMLIIGREAS-FRVPICR-VKR-IRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPR 623 (961)
Q Consensus 547 ~~~r~lsl~~~~~~~-~~~~~~~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~ 623 (961)
..+++|.+..+.... ....+.. +++ |+.|.+.++. .+....+..+...+++|++|+|++|.. ++.....++.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~ 186 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS----GFTTDGLLSIVTHCRKIKTLLMEESSF-SEKDGKWLHE 186 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE----EEEHHHHHHHHHHCTTCSEEECTTCEE-ECCCSHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC----CcCHHHHHHHHhhCCCCCEEECccccc-cCcchhHHHH
Confidence 457788887765432 1122222 344 9999998764 123344555667899999999999961 1111111344
Q ss_pred cccccCccceEEecCCccc-----ccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCcccc---cccccc
Q 002132 624 NIEKLVHLRYLNLSCQNIR-----KLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSL---RYMPVG 695 (961)
Q Consensus 624 ~i~~L~~Lr~L~L~~~~i~-----~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~---~~~p~~ 695 (961)
.+..+++|++|++++|.++ .++..+.++++|++|++++|. +..+|..+.++++|++|+++.+... ...+..
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 4567899999999999886 556667889999999999988 6678888999999999999754322 223345
Q ss_pred CCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCC
Q 002132 696 IGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGG 775 (961)
Q Consensus 696 i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 775 (961)
+..+++|+.|.... . .....+..+..+++|+.|++.++... .......+..+++|+.|++.. ...
T Consensus 266 l~~~~~L~~L~l~~----~-~~~~l~~~~~~~~~L~~L~Ls~~~l~------~~~~~~~~~~~~~L~~L~L~~-~~~--- 330 (592)
T 3ogk_B 266 LVFPRKLCRLGLSY----M-GPNEMPILFPFAAQIRKLDLLYALLE------TEDHCTLIQKCPNLEVLETRN-VIG--- 330 (592)
T ss_dssp CCCCTTCCEEEETT----C-CTTTGGGGGGGGGGCCEEEETTCCCC------HHHHHHHHTTCTTCCEEEEEG-GGH---
T ss_pred hhccccccccCccc----c-chhHHHHHHhhcCCCcEEecCCCcCC------HHHHHHHHHhCcCCCEEeccC-ccC---
Confidence 66777777765321 1 12223556777888999888776521 111222357789999999983 211
Q ss_pred ccCCcchHHHHHhhCCCCCCCceEEEee----------e-cCCCC-CCCccccccCccEEEEeCCCCCCcC-CCCCC-cc
Q 002132 776 ERRKNEDDQLLLEALQPPPDLKELEIRF----------Y-RGNTV-FPNWLMSLTNLRSLVLYGCENCEQL-PPLGK-LQ 841 (961)
Q Consensus 776 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~----------~-~~~~~-lp~~~~~l~~L~~L~L~~~~~~~~l-~~l~~-l~ 841 (961)
...+......+++|++|++++ + .+... ++.....+++|++|++..+.+.+.. ..++. ++
T Consensus 331 -------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 331 -------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403 (592)
T ss_dssp -------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC
Confidence 233333445678899999994 3 22210 1222346899999999766654422 22444 88
Q ss_pred ccceeecccc---cCceEeCCcccCCcccCcCcccceeecccccc-ccccccccccccccccccccccceecccccccCc
Q 002132 842 SLEKLSLTIM---RSVKRVGDECLGIEIIDAFPKLKSLTISSMLE-LEEWDYGITRTGNTVINIMPRLSSLTIARCPKLK 917 (961)
Q Consensus 842 ~L~~L~L~~~---~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 917 (961)
+|+.|++.++ ..++..+..........++++|+.|++++|.+ +..-.... ....+|+|+.|++++|. ++
T Consensus 404 ~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~------~~~~~~~L~~L~L~~n~-l~ 476 (592)
T 3ogk_B 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY------IGQYSPNVRWMLLGYVG-ES 476 (592)
T ss_dssp SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH------HHHSCTTCCEEEECSCC-SS
T ss_pred CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH------HHHhCccceEeeccCCC-CC
Confidence 9999999843 33433221100000124689999999987643 22111110 01248999999999986 43
Q ss_pred --CCCCCCCCCCCccEEEEccccccccccc-CCCCcccceEEec
Q 002132 918 --ALPDHIHQTTTLKELRIWACELLGKHYR-GGTEKTGLKYHTF 958 (961)
Q Consensus 918 --~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~l~~~~~ 958 (961)
.++..+..+++|+.|+|++|+.....+. .....++|+.+.+
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEE
T ss_pred HHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeEC
Confidence 3444456789999999999994322221 1123455555544
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.9e-17 Score=190.35 Aligned_cols=214 Identities=16% Similarity=0.090 Sum_probs=127.7
Q ss_pred CCceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 599 STSLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 599 ~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
+++|++|+|++|. +..++ ..++.+++|++|+|++|.++.+++ ++.+++|++|+|++|. +..+|. .++
T Consensus 33 ~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~ 100 (487)
T 3oja_A 33 AWNVKELDLSGNP------LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPS 100 (487)
T ss_dssp GGGCCEEECCSSC------CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTT
T ss_pred CCCccEEEeeCCc------CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCC
Confidence 3478888888887 55554 577888888888888888876655 7888888888888887 555553 377
Q ss_pred CceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhcccc-C
Q 002132 678 MKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLEL-D 756 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l-~ 756 (961)
|++|++++|.. ..+|. ..+++|+.|+ ...+.+.+..+..+..+++|+.|++.++...+..+. .+ .
T Consensus 101 L~~L~L~~N~l-~~~~~--~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~l~~ 166 (487)
T 3oja_A 101 IETLHAANNNI-SRVSC--SRGQGKKNIY----LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-------ELAA 166 (487)
T ss_dssp CCEEECCSSCC-CCEEE--CCCSSCEEEE----CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-------GGGG
T ss_pred cCEEECcCCcC-CCCCc--cccCCCCEEE----CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH-------HHhh
Confidence 88888888753 33332 2345666666 555555555455566666666666655544321110 11 1
Q ss_pred CCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC
Q 002132 757 KKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP 836 (961)
Q Consensus 757 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 836 (961)
.+++|+.|++++|.... ......+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.+....+.
T Consensus 167 ~l~~L~~L~Ls~N~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYD-------------VKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp GTTTCCEEECTTSCCCE-------------EECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred hCCcccEEecCCCcccc-------------ccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchh
Confidence 34555555555554331 0122235556666666666555 555555566666666666655433333
Q ss_pred CCCccccceeeccccc
Q 002132 837 LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 837 l~~l~~L~~L~L~~~~ 852 (961)
++.+++|+.|++++|+
T Consensus 233 l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCCCTTCCEEECTTCC
T ss_pred hccCCCCCEEEcCCCC
Confidence 5555666666665554
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=6.2e-18 Score=183.00 Aligned_cols=202 Identities=18% Similarity=0.149 Sum_probs=121.1
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc--ccchhhh-------ccCCCcEEeecCccccc
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR--KLPETLC-------ELYNLEKLYITRCLYLE 666 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~--~Lp~~i~-------~L~~L~~L~L~~~~~l~ 666 (961)
+...+.|+.|++++|. + .+|..+... |++|+|++|.++ .+|..+. ++++|++|++++|....
T Consensus 39 ~~~~~~L~~l~l~~n~------l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDT------E-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109 (312)
T ss_dssp EEEEEECTTHHHHCCT------T-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred EccCCCceeEeecccc------c-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence 5667788888888887 6 677766654 888888888875 4666665 78888888888888555
Q ss_pred ccchhh--hcccCCceeecCCccccccccccCCCC-----CCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccc
Q 002132 667 ELPEGI--GKLINMKHLLNYRTDSLRYMPVGIGRL-----TGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIR 739 (961)
Q Consensus 667 ~lp~~i--~~L~~L~~L~l~~~~~~~~~p~~i~~L-----~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~ 739 (961)
.+|..+ ..+++|++|++++|.. ...|..++.+ ++|++|+ +.++.
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~----------------------------L~~N~ 160 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLS----------------------------IAQAH 160 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEE----------------------------EESCS
T ss_pred hhHHHHHHhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEE----------------------------eeCCC
Confidence 778776 7888888888888853 3335444444 4444444 33332
Q ss_pred cCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhC--CCCCCCceEEEeeecCCCCCCC---c-
Q 002132 740 RLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEAL--QPPPDLKELEIRFYRGNTVFPN---W- 813 (961)
Q Consensus 740 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~lp~---~- 813 (961)
.....+. .+..+++|+.|++++|.... ...++..+ ..+++|++|++++|.+.. +|. .
T Consensus 161 l~~~~~~-------~~~~l~~L~~L~Ls~N~l~~---------~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~ 223 (312)
T 1wwl_A 161 SLNFSCE-------QVRVFPALSTLDLSDNPELG---------ERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSAL 223 (312)
T ss_dssp CCCCCTT-------TCCCCSSCCEEECCSCTTCH---------HHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHH
T ss_pred CccchHH-------HhccCCCCCEEECCCCCcCc---------chHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHH
Confidence 2211111 23344555555555443220 11122233 556677777777776653 221 2
Q ss_pred cccccCccEEEEeCCCCCCcC--CCCCCccccceeeccccc
Q 002132 814 LMSLTNLRSLVLYGCENCEQL--PPLGKLQSLEKLSLTIMR 852 (961)
Q Consensus 814 ~~~l~~L~~L~L~~~~~~~~l--~~l~~l~~L~~L~L~~~~ 852 (961)
+..+++|+.|+|++|.+.+.. +.+..+++|++|+|++|.
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 225567777777776655433 224455666666666554
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=1.3e-18 Score=207.24 Aligned_cols=367 Identities=17% Similarity=0.114 Sum_probs=194.3
Q ss_pred cceeEEEEEeccccc-cccccc-cCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcc
Q 002132 547 EKVRHLMLIIGREAS-FRVPIC-RVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRN 624 (961)
Q Consensus 547 ~~~r~lsl~~~~~~~-~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~ 624 (961)
..+++|.+..+.... ....+. .+++|++|.+.++. .+....+..++..+++|++|+|++|. +++.....++..
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~----~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~ 179 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE----GFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHF 179 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE----EEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGS
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC----CCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHH
Confidence 467788888765442 122232 58899999998763 13334466667789999999999987 221112224444
Q ss_pred ccccCccceEEecCCc--cc--ccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccc------cccccc
Q 002132 625 IEKLVHLRYLNLSCQN--IR--KLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDS------LRYMPV 694 (961)
Q Consensus 625 i~~L~~Lr~L~L~~~~--i~--~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~------~~~~p~ 694 (961)
...+++|++|++++|. +. .++..+.++++|++|++++|..+..+|..+.++++|++|++..+.. +..++.
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 4578899999999886 32 3444456789999999999966777888889999999999765531 122334
Q ss_pred cCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCC-
Q 002132 695 GIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQ- 773 (961)
Q Consensus 695 ~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~- 773 (961)
.+.++++|+.|..+..... ...+..+..+++|+.|++.++... .......+..+++|+.|++..+ ..+
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~----~~l~~~~~~~~~L~~L~L~~~~l~------~~~l~~~~~~~~~L~~L~l~~~-~~~~ 328 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVP----AYLPAVYSVCSRLTTLNLSYATVQ------SYDLVKLLCQCPKLQRLWVLDY-IEDA 328 (594)
T ss_dssp HHHTCTTCCEEECCBTCCG----GGGGGGHHHHTTCCEEECTTCCCC------HHHHHHHHTTCTTCCEEEEEGG-GHHH
T ss_pred HHhcCCCcccccCCcccch----hhHHHHHHhhCCCCEEEccCCCCC------HHHHHHHHhcCCCcCEEeCcCc-cCHH
Confidence 4566666666521110000 111222334566666666554411 0111112234445555555433 000
Q ss_pred ----------------------C-CccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccc-cccCccEEEEe---
Q 002132 774 ----------------------G-GERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLM-SLTNLRSLVLY--- 826 (961)
Q Consensus 774 ----------------------~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~L~--- 826 (961)
. ...........+......+++|++|.+..+.+....+..+. .+++|+.|+|+
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 0 00000000111111111245556665544443321122222 35666666666
Q ss_pred --CCCCCCcCCC-------CCCccccceeecccccCceEeCCcccCCcccCcCcccceeecccccccccccccccccccc
Q 002132 827 --GCENCEQLPP-------LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNT 897 (961)
Q Consensus 827 --~~~~~~~l~~-------l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~ 897 (961)
+|......|. +..+++|+.|+|++ .+...+....+ ..+++|+.|+|++|. +...... .
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~----~~~~~L~~L~L~~~~-i~~~~~~------~ 475 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG----TYAKKMEMLSVAFAG-DSDLGMH------H 475 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHH----HHCTTCCEEEEESCC-SSHHHHH------H
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHH----HhchhccEeeccCCC-CcHHHHH------H
Confidence 2222222211 33456666666644 12111000000 136677777777663 2211110 0
Q ss_pred ccccccccceecccccccCc-CCCCCCCCCCCccEEEEcccccccc
Q 002132 898 VINIMPRLSSLTIARCPKLK-ALPDHIHQTTTLKELRIWACELLGK 942 (961)
Q Consensus 898 ~~~~~p~L~~L~l~~c~~L~-~lp~~~~~l~~L~~L~l~~~~~l~~ 942 (961)
....+|+|++|+|++|+.-. .++..+..+++|+.|++++|+....
T Consensus 476 l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 01357899999999997521 1222334578999999999987443
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=3.2e-17 Score=188.39 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=58.6
Q ss_pred ccCcccccc----CccceEEecCCcccccc-hhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccc
Q 002132 620 KIPRNIEKL----VHLRYLNLSCQNIRKLP-ETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPV 694 (961)
Q Consensus 620 ~lp~~i~~L----~~Lr~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~ 694 (961)
.+|..+..+ ++|++|+|++|.++.+| ..++++++|++|+|++|. +...+. +..+++|++|++++|. +..+|.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCC
Confidence 345555444 48999999999998774 678999999999999998 444444 8899999999999985 444432
Q ss_pred cCCCCCCCCcCC
Q 002132 695 GIGRLTGLRTLD 706 (961)
Q Consensus 695 ~i~~L~~L~~L~ 706 (961)
.++|++|+
T Consensus 98 ----~~~L~~L~ 105 (487)
T 3oja_A 98 ----GPSIETLH 105 (487)
T ss_dssp ----CTTCCEEE
T ss_pred ----CCCcCEEE
Confidence 24555554
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=8e-17 Score=174.26 Aligned_cols=222 Identities=18% Similarity=0.138 Sum_probs=111.2
Q ss_pred eeEEecCCCCCCCCcccc--ccCcccc-------ccCccceEEecCCccc-ccchhh--hccCCCcEEeecCcccccccc
Q 002132 602 LRALDFWGSYDVSPFWTL--KIPRNIE-------KLVHLRYLNLSCQNIR-KLPETL--CELYNLEKLYITRCLYLEELP 669 (961)
Q Consensus 602 Lr~L~L~~~~~~~~~~~~--~lp~~i~-------~L~~Lr~L~L~~~~i~-~Lp~~i--~~L~~L~~L~L~~~~~l~~lp 669 (961)
|++|+|++|. +. .+|..+. ++.+|++|+|++|.++ .+|..+ ..+++|++|++++|. +..+|
T Consensus 65 L~~L~L~~n~------l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~ 137 (312)
T 1wwl_A 65 IKSLSLKRLT------VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRD 137 (312)
T ss_dssp HHHCCCCEEE------EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSS
T ss_pred Hhhccccccc------ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-Ccchh
Confidence 6666666665 32 2444443 5666666666666665 456654 666666666666666 44446
Q ss_pred hhhhcc-----cCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCC--cccc--cccccCCCcCCcccccc
Q 002132 670 EGIGKL-----INMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGR--KACW--FESLKNLKHLQVCGIRR 740 (961)
Q Consensus 670 ~~i~~L-----~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~--~~~~--l~~L~~L~~L~~~~~~~ 740 (961)
..+..+ ++|++|++++|......|..++.+++|++|+ .+.+.+.+. .+.. +..+++|+.|++.++..
T Consensus 138 ~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~----Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD----LSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE----CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE----CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 656655 6666666666654333335566666666666 444433221 0111 25566666666655543
Q ss_pred CCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCc
Q 002132 741 LGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNL 820 (961)
Q Consensus 741 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L 820 (961)
. ..+......+..+++|+.|+++.|...... ....+..+++|++|++++|.+.. +|.++. ++|
T Consensus 214 ~----~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L 276 (312)
T 1wwl_A 214 E----TPSGVCSALAAARVQLQGLDLSHNSLRDAA----------GAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKL 276 (312)
T ss_dssp C----CHHHHHHHHHHTTCCCSEEECTTSCCCSSC----------CCSCCCCCTTCCEEECTTSCCSS-CCSSCC--SEE
T ss_pred c----chHHHHHHHHhcCCCCCEEECCCCcCCccc----------chhhhhhcCCCCEEECCCCccCh-hhhhcc--CCc
Confidence 2 111111112223344555555444332100 00112233455555555555553 555444 555
Q ss_pred cEEEEeCCCCCCcCCCCCCccccceeeccccc
Q 002132 821 RSLVLYGCENCEQLPPLGKLQSLEKLSLTIMR 852 (961)
Q Consensus 821 ~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 852 (961)
+.|+|++|.+.+. |.++.+++|++|+|++|+
T Consensus 277 ~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 277 SVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred eEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 5555555544333 335555555555555544
No 76
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.65 E-value=3.3e-15 Score=168.81 Aligned_cols=318 Identities=15% Similarity=0.072 Sum_probs=186.2
Q ss_pred CCceecccchHHHHHHHH-hcCCcccCCCeEEEEE--EcCCCchHHHHHHHHhcchhhHh---cCC-eEEEEEeCCcccH
Q 002132 182 EEEICGRVGERNELLSKL-LCESSEQQKGLHIISI--VGMGGIGKTTLAQLACNHVEVKR---KFD-KLLWVCVSDPFEQ 254 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~---~f~-~~~wv~~s~~~~~ 254 (961)
+..++||+.+++++.+++ .....+.....+.+.| +|++|+||||||+.+++...... .|+ .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999988 4321100013456666 99999999999999998542211 122 3678887777788
Q ss_pred HHHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHhC--CceEEEEEeCCCCCCc------cChhhhHHhhhCC---C--CCc
Q 002132 255 FRVAKAIAEALGIPSSN-LGEFQSLLKLISESIT--GKRFLLVLDDVWDGDC------IKWEPFYLCLKNG---L--HGS 320 (961)
Q Consensus 255 ~~~~~~i~~~l~~~~~~-~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~------~~~~~l~~~l~~~---~--~gs 320 (961)
..++..++.+++...+. ..+...+...+.+.+. +++++|||||++.... ..+..+...+... + ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 89999999999765332 2334556666666664 7799999999987422 2233333333321 2 345
Q ss_pred EEEEEccchhhhhhhc--------cCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcC------C
Q 002132 321 KILVTTRKKSVASMMG--------STDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFK------G 386 (961)
Q Consensus 321 ~iivTtR~~~~~~~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~------G 386 (961)
.||+||+...+...+. ... ..+.+.+++.++++++|.+.+....... ....+....|++.|+ |
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~-~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIG-FKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcC-CeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCC
Confidence 5888887665432211 111 2399999999999999976542111100 111356778888999 9
Q ss_pred CchhHHHHHHhhc------cC--CCHHHHHHHhcCcccchhhhhhhH-HHHHHHhhcCCChhhHHHHhhhccCC--CCCc
Q 002132 387 LPLAAKTIGSLMR------SK--QIEEEWERISNSDLWRVEEMEKGV-LSSLLLSYNDLPSKVKICFSYCAVFP--KNYN 455 (961)
Q Consensus 387 ~PLai~~~~~~l~------~~--~~~~~w~~~~~~~~~~~~~~~~~~-~~~l~~sy~~L~~~~k~cf~~~~~fp--~~~~ 455 (961)
.|..+..+..... .. -+.+.+....... . ...+.-++..||.+.+.++..++.+. .+..
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 9976655543221 00 0122222221110 1 23344567889999999998888653 2335
Q ss_pred cChHHHHHHHH--H-cCCcccCCCCcHHHHHHHHHHHHHhCCCcccccccCCCceeeEeechhH
Q 002132 456 IKKDELLTLWM--A-QGYLSAKQNKEMETIGEEYFSILASRSFFQEFEKSYDNRIIECKMHDIV 516 (961)
Q Consensus 456 i~~~~Li~~w~--a-~g~i~~~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mHdlv 516 (961)
+....+...+. + .-. . .... .......++++|++.++|...... .|+...|++|.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~l~~L~~~gli~~~~~~-~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMY-N-VKPR-GYTQYHIYLKHLTSLGLVDAKPSG-RGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHHS-C-CCCC-CHHHHHHHHHHHHHTTSEEEECC--------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhhc-C-CCCC-CHHHHHHHHHHHHhCCCEEeeccc-CCCCCceeEEEeC
Confidence 66666655442 2 111 0 0011 123456789999999999865432 1222334455443
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.4e-15 Score=160.79 Aligned_cols=63 Identities=22% Similarity=0.146 Sum_probs=37.1
Q ss_pred CCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeeccccc
Q 002132 790 LQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 790 l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 852 (961)
+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+....+. ++.+++|+.|+|++|+
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 34455666666666666552233455666777777776655543332 5666667777776665
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=4.1e-16 Score=168.07 Aligned_cols=190 Identities=20% Similarity=0.225 Sum_probs=106.5
Q ss_pred cCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 598 ESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 598 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
.++.|++|++++|. +..+| .+..+++|++|+|++|.++.+|. +.++++|++|++++|. +..+| .+..+++
T Consensus 39 ~l~~L~~L~l~~~~------i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGTG------VTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTSC------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTT
T ss_pred HcCCcCEEEeeCCC------ccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCC
Confidence 34556666666665 44554 45556666666666666666555 6666666666666665 44444 3556666
Q ss_pred CceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCC
Q 002132 678 MKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDK 757 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~ 757 (961)
|++|++++|. +..+|. +..+++|++|+ ...+.+....+ +. .
T Consensus 109 L~~L~l~~n~-l~~~~~-l~~l~~L~~L~----l~~n~l~~~~~--l~-------------------------------~ 149 (308)
T 1h6u_A 109 IKTLDLTSTQ-ITDVTP-LAGLSNLQVLY----LDLNQITNISP--LA-------------------------------G 149 (308)
T ss_dssp CCEEECTTSC-CCCCGG-GTTCTTCCEEE----CCSSCCCCCGG--GG-------------------------------G
T ss_pred CCEEECCCCC-CCCchh-hcCCCCCCEEE----CCCCccCcCcc--cc-------------------------------C
Confidence 6666666654 233332 44444444444 22221111100 22 2
Q ss_pred CCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCC
Q 002132 758 KKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPL 837 (961)
Q Consensus 758 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l 837 (961)
+++|+.|+++.|.... ...+..+++|+.|++++|.+.. +|. +..+++|+.|+|++|.+.. ++.+
T Consensus 150 l~~L~~L~l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~-~~~l 213 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVSD-------------LTPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSPL 213 (308)
T ss_dssp CTTCCEEECCSSCCCC-------------CGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGGG
T ss_pred CCCccEEEccCCcCCC-------------ChhhcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCc-cccc
Confidence 2334444444333221 0114556777788888777766 544 6678888888888886654 3357
Q ss_pred CCccccceeeccccc
Q 002132 838 GKLQSLEKLSLTIMR 852 (961)
Q Consensus 838 ~~l~~L~~L~L~~~~ 852 (961)
..+++|+.|++++|.
T Consensus 214 ~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 214 ANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEEccCCe
Confidence 788888888888776
No 79
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.65 E-value=7.8e-15 Score=161.81 Aligned_cols=297 Identities=12% Similarity=0.081 Sum_probs=181.1
Q ss_pred CCCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc------c
Q 002132 180 IDEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF------E 253 (961)
Q Consensus 180 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~------~ 253 (961)
..+..|+||+.+++++.+++.. + +++.|+|++|+|||||++++++.. . .+|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3456799999999999998863 1 589999999999999999998742 2 7788765433 5
Q ss_pred HHHHHHHHHHHcCCC----------------CC--CCCCHHHHHHHHHHHhCC-ceEEEEEeCCCCCCc------cChhh
Q 002132 254 QFRVAKAIAEALGIP----------------SS--NLGEFQSLLKLISESITG-KRFLLVLDDVWDGDC------IKWEP 308 (961)
Q Consensus 254 ~~~~~~~i~~~l~~~----------------~~--~~~~~~~l~~~l~~~l~~-kr~LlVlDdv~~~~~------~~~~~ 308 (961)
...++..+.+.+... .. .....+++.+.+.+.... ++.+||+||++..+. ..+..
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 666777777665420 00 123456666666665543 389999999987532 12222
Q ss_pred hHHhhhCCCCCcEEEEEccchhh-hhh---------hccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHH
Q 002132 309 FYLCLKNGLHGSKILVTTRKKSV-ASM---------MGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGR 378 (961)
Q Consensus 309 l~~~l~~~~~gs~iivTtR~~~~-~~~---------~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 378 (961)
+...+.+...+.++|+|++.... ... ........+++.||+.+|+.+++.+.....+. ... .+.+.
T Consensus 154 ~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~~~ 229 (350)
T 2qen_A 154 LFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENEIE 229 (350)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHH
T ss_pred HHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHH
Confidence 22222222257789999887653 221 11111247999999999999999875422111 111 34678
Q ss_pred HHHhhcCCCchhHHHHHHhhccCCCHHHHH-HHhcCcccchhhhhhhHHHHH-HHhhcCCChhhHHHHhhhccCCCCCcc
Q 002132 379 RIAGKFKGLPLAAKTIGSLMRSKQIEEEWE-RISNSDLWRVEEMEKGVLSSL-LLSYNDLPSKVKICFSYCAVFPKNYNI 456 (961)
Q Consensus 379 ~i~~~c~G~PLai~~~~~~l~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~k~cf~~~~~fp~~~~i 456 (961)
.|++.|+|+|+++..++..+....+...+. .+.+ .....+...+ .+.+ + ++..+..+..+|. + .+
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~l~~-~-~~~~~~~l~~la~---g-~~ 296 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE-------VAKGLIMGELEELRR-R-SPRYVDILRAIAL---G-YN 296 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH-------HHHHHHHHHHHHHHH-H-CHHHHHHHHHHHT---T-CC
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH-------HHHHHHHHHHHHHHh-C-ChhHHHHHHHHHh---C-CC
Confidence 999999999999999887643211122111 1110 0000111111 1222 2 7788889988887 2 23
Q ss_pred ChHHHHHHHHHcCCcccCCCCcHHHHHHHHHHHHHhCCCcccccccCCCceeeEe-echhHHHHHH
Q 002132 457 KKDELLTLWMAQGYLSAKQNKEMETIGEEYFSILASRSFFQEFEKSYDNRIIECK-MHDIVHDFAR 521 (961)
Q Consensus 457 ~~~~Li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~-mHdlv~~~a~ 521 (961)
+...+.....+.. ++.. ......+++.|++.++|.... + .|+ .|++++++.+
T Consensus 297 ~~~~l~~~~~~~~-----~~~~-~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 297 RWSLIRDYLAVKG-----TKIP-EPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVLR 349 (350)
T ss_dssp SHHHHHHHHHHTT-----CCCC-HHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHHT
T ss_pred CHHHHHHHHHHHh-----CCCC-HHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHHc
Confidence 4455554432211 0112 234578999999999997642 1 244 4788888764
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=1.5e-15 Score=161.94 Aligned_cols=62 Identities=23% Similarity=0.157 Sum_probs=41.3
Q ss_pred CCCCCCCceEEEeeecCCCCCCC-ccccccCccEEEEeCCCCCCcCCCCCCccccceeeccccc
Q 002132 790 LQPPPDLKELEIRFYRGNTVFPN-WLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMR 852 (961)
Q Consensus 790 l~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 852 (961)
+..+++|+.|++++|.+.. +|. .+..+++|+.|+|++|.+....+.+..+++|+.|+|.+|+
T Consensus 144 ~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 3445667777777777766 544 3456777777877777765444446667777777777766
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=9.1e-16 Score=162.94 Aligned_cols=203 Identities=19% Similarity=0.157 Sum_probs=109.3
Q ss_pred CceeEEecCCCCCCCCccccccCc-cccccCccceEEecCCcccccch-hhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPR-NIEKLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
+.|++|++++|. +..++. .+.++++|++|+|++|.++.+|. .+.++++|++|++++|......|..+.++++
T Consensus 28 ~~l~~L~ls~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCC------CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCccEEECCCCc------ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 457777777776 655554 66777777777777777776654 5677777777777777633333456777777
Q ss_pred CceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCC-cccccccccCCCcCCccccccCCCCCChhhhhccccC
Q 002132 678 MKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGR-KACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELD 756 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~-~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~ 756 (961)
|++|++++|......+..++.+++|++|+ ...+.+... .+..+.
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----l~~n~l~~~~l~~~~~------------------------------- 146 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELN----VAHNLIQSFKLPEYFS------------------------------- 146 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEE----CCSSCCCCCCCCGGGG-------------------------------
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEE----CcCCccceecCchhhc-------------------------------
Confidence 77777777753322222455555555555 333322211 122222
Q ss_pred CCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCc-eEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCC
Q 002132 757 KKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLK-ELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLP 835 (961)
Q Consensus 757 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~ 835 (961)
.+++|+.|++++|...... ...+..+..++.|. +|++++|.+.. +|.......+|+.|+|++|.+....+
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIY--------CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp GCTTCCEEECCSSCCCEEC--------GGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred cCCCCCEEECCCCCCCcCC--------HHHhhhhhhccccceeeecCCCcccc-cCccccCCCcccEEECCCCceeecCH
Confidence 2333444444333322100 00011111222222 56666666655 54444444466666776666544333
Q ss_pred C-CCCccccceeeccccc
Q 002132 836 P-LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 836 ~-l~~l~~L~~L~L~~~~ 852 (961)
. ++++++|+.|+|++|+
T Consensus 218 ~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TTTTTCCSCCEEECCSSC
T ss_pred hHhcccccccEEEccCCc
Confidence 3 4666666666666665
No 82
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.63 E-value=3.7e-16 Score=138.25 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHhHhhhHhHHHHHHHH
Q 002132 9 LVEQLISFVAKEIKQQVKLVIGVEKEVKGITSHLRAIRAVLDDAEEK--QVKDEAVRLWLGRLKYASYDIEDVLDEWITA 86 (961)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~~~d~ed~lD~~~~~ 86 (961)
+++.+++||++++.+|+.++.||++++++|+++|++|++||.+|+.+ +..++.++.|+++||++|||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999987 5688999999999999999999999999987
Q ss_pred HH
Q 002132 87 RH 88 (961)
Q Consensus 87 ~~ 88 (961)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 63
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=8e-16 Score=163.37 Aligned_cols=205 Identities=21% Similarity=0.199 Sum_probs=139.5
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCc-cccccCccceEEecCCcccccc-hh
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPR-NIEKLVHLRYLNLSCQNIRKLP-ET 647 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~Lp-~~ 647 (961)
++|+.|.+.++.+. .+++..|..+++|++|++++|. +..++. .+.++++|++|+|++|.++.++ ..
T Consensus 28 ~~l~~L~ls~n~l~------~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNPLR------HLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp TTCCEEECTTCCCC------EECTTTTTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccEEECCCCccc------ccCHhHhccccCCcEEECCCCc------CCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 46888888887653 2233357788889999998887 666654 6788888999999988888765 56
Q ss_pred hhccCCCcEEeecCcccccccch-hhhcccCCceeecCCccccc-cccccCCCCCCCCcCCceEeCCCCCcCCCcccccc
Q 002132 648 LCELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTDSLR-YMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFE 725 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~ 725 (961)
+.++++|++|++++|. +..++. .+.++++|++|++++|.... .+|..++.+++|++|+ ...+.+....+..+.
T Consensus 96 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~----Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 96 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD----LSSNKIQSIYCTDLR 170 (276)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE----CCSSCCCEECGGGGH
T ss_pred hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE----CCCCCCCcCCHHHhh
Confidence 8888899999998887 444443 68888889999988886433 2577788888888887 555655444444455
Q ss_pred cccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeec
Q 002132 726 SLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYR 805 (961)
Q Consensus 726 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 805 (961)
.+.+|+.|.+ .|+++.|.... +........+|+.|++++|.
T Consensus 171 ~l~~L~~l~l---------------------------~L~ls~n~l~~------------~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 171 VLHQMPLLNL---------------------------SLDLSLNPMNF------------IQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp HHHTCTTCCE---------------------------EEECCSSCCCE------------ECTTSSCSCCEEEEECCSSC
T ss_pred hhhhccccce---------------------------eeecCCCcccc------------cCccccCCCcccEEECCCCc
Confidence 5555553321 22333222211 00111223478888888888
Q ss_pred CCCCCCCc-cccccCccEEEEeCCCCC
Q 002132 806 GNTVFPNW-LMSLTNLRSLVLYGCENC 831 (961)
Q Consensus 806 ~~~~lp~~-~~~l~~L~~L~L~~~~~~ 831 (961)
+.. +|.. +..+++|+.|+|++|.+.
T Consensus 212 l~~-~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 212 LKS-VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSC-CCTTTTTTCCSCCEEECCSSCBC
T ss_pred eee-cCHhHhcccccccEEEccCCccc
Confidence 877 5544 567888999999888664
No 84
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=2.5e-14 Score=158.21 Aligned_cols=293 Identities=11% Similarity=0.081 Sum_probs=176.4
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-----ccHH
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-----FEQF 255 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~ 255 (961)
.+..|+||+++++.+.+ +. . +++.|+|++|+|||||++++++.. .. ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 74 1 589999999999999999999853 21 3688887642 3444
Q ss_pred HHHHHHHHHcC--------------C----CCC-----------CCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCc---
Q 002132 256 RVAKAIAEALG--------------I----PSS-----------NLGEFQSLLKLISESITGKRFLLVLDDVWDGDC--- 303 (961)
Q Consensus 256 ~~~~~i~~~l~--------------~----~~~-----------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~--- 303 (961)
.++..+.+.+. . ..+ .......+.+.+.+... ++++|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 45554444331 0 000 12345556655555433 499999999977532
Q ss_pred cChhhhHHhhhCCCCCcEEEEEccchhhhhhh----------ccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhH
Q 002132 304 IKWEPFYLCLKNGLHGSKILVTTRKKSVASMM----------GSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKL 373 (961)
Q Consensus 304 ~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~----------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 373 (961)
.+|..+...+.+...+.++|+|++........ .......+.+.+|+.+|+.+++...+...+. .. ..
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~-~~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DF-KD- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CC-CC-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CC-Cc-
Confidence 23444434333333467899999976532211 1011257899999999999999875421111 11 11
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHhhccCCCHHHHHH-HhcCcccchhhhhhhHHHHHH-Hhhc--CCChhhHHHHhhhcc
Q 002132 374 EQIGRRIAGKFKGLPLAAKTIGSLMRSKQIEEEWER-ISNSDLWRVEEMEKGVLSSLL-LSYN--DLPSKVKICFSYCAV 449 (961)
Q Consensus 374 ~~~~~~i~~~c~G~PLai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~-~sy~--~L~~~~k~cf~~~~~ 449 (961)
...|++.|+|+|+++..++..+........|.. +.+ .....+...+. +.+. .+++..+..+..+|.
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE-------YAKKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH-------HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH-------HHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 178999999999999999887643322333321 110 00011222222 2221 678889999999998
Q ss_pred CCCCCccChHHHHHHHH-HcCCcccCCCCcHHHHHHHHHHHHHhCCCcccccccCCCceeeEe-echhHHHHH
Q 002132 450 FPKNYNIKKDELLTLWM-AQGYLSAKQNKEMETIGEEYFSILASRSFFQEFEKSYDNRIIECK-MHDIVHDFA 520 (961)
Q Consensus 450 fp~~~~i~~~~Li~~w~-a~g~i~~~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~-mHdlv~~~a 520 (961)
+. +...+....- ..|. .........+++.|++.++|.... + .|+ .|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 22 4444443210 1121 011234578899999999997642 1 245 588888764
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=8e-16 Score=169.25 Aligned_cols=99 Identities=18% Similarity=0.129 Sum_probs=59.3
Q ss_pred CCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC--CCCccccceeecccccCceEeCCcccCCcccCcCcc
Q 002132 795 DLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP--LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPK 872 (961)
Q Consensus 795 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~ 872 (961)
.++.|++++|.+.. +|.......+|+.|.+.+|...+.+|. ++.+++|+.|+|++|. ++.++. ..|.+
T Consensus 155 ~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~--------~~~~~ 224 (350)
T 4ay9_X 155 ESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS--------YGLEN 224 (350)
T ss_dssp SCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS--------SSCTT
T ss_pred hhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh--------hhhcc
Confidence 46666666666665 555555556677777765555555554 5667777777777665 555543 24556
Q ss_pred cceeeccccccccccccccccccccccccccccceecccc
Q 002132 873 LKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIAR 912 (961)
Q Consensus 873 L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 912 (961)
|+.|.+.++.+++.++.. ..+++|+.+++.+
T Consensus 225 L~~L~~l~~~~l~~lP~l---------~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPTL---------EKLVALMEASLTY 255 (350)
T ss_dssp CCEEECTTCTTCCCCCCT---------TTCCSCCEEECSC
T ss_pred chHhhhccCCCcCcCCCc---------hhCcChhhCcCCC
Confidence 666666666566655532 2466666666643
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=1.8e-15 Score=160.03 Aligned_cols=81 Identities=30% Similarity=0.371 Sum_probs=43.5
Q ss_pred cCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccch-hhhccc
Q 002132 598 ESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPE-GIGKLI 676 (961)
Q Consensus 598 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~ 676 (961)
.++.|+.|++++|. +..++ .+..+++|++|++++|.++.++ .+.++++|++|++++|. +..+|. .+.+++
T Consensus 39 ~l~~L~~L~l~~~~------i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 39 ELNSIDQIIANNSD------IKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLT 109 (272)
T ss_dssp HHTTCCEEECTTSC------CCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCT
T ss_pred cccceeeeeeCCCC------ccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCc
Confidence 34555556665554 44333 3555566666666665555543 45556666666666655 333332 345556
Q ss_pred CCceeecCCcc
Q 002132 677 NMKHLLNYRTD 687 (961)
Q Consensus 677 ~L~~L~l~~~~ 687 (961)
+|++|++++|.
T Consensus 110 ~L~~L~L~~n~ 120 (272)
T 3rfs_A 110 NLKELVLVENQ 120 (272)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEECCCCc
Confidence 66666665554
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=2.4e-15 Score=160.35 Aligned_cols=199 Identities=17% Similarity=0.090 Sum_probs=125.0
Q ss_pred ccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCcccccc
Q 002132 567 CRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKLP 645 (961)
Q Consensus 567 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~Lp 645 (961)
..+++++++.+.++... .++.. -.+.|++|+|++|. +..+ |..+..+++|++|+|++|.++.+|
T Consensus 7 ~~l~~l~~l~~~~~~l~------~ip~~---~~~~l~~L~L~~N~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 71 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT------ALPPD---LPKDTTILHLSENL------LYTFSLATLMPYTRLTQLNLDRAELTKLQ 71 (290)
T ss_dssp ECSTTCCEEECTTSCCS------SCCSC---CCTTCCEEECTTSC------CSEEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred cccCCccEEECCCCCCC------cCCCC---CCCCCCEEEcCCCc------CCccCHHHhhcCCCCCEEECCCCccCccc
Confidence 45566677776665532 11221 12567777777776 5444 355677777777777777777666
Q ss_pred hhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCcccccccc-ccCCCCCCCCcCCceEeCCCCCcCCCccccc
Q 002132 646 ETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMP-VGIGRLTGLRTLDEFHVIGGGGVDGRKACWF 724 (961)
Q Consensus 646 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l 724 (961)
.. ..+++|++|++++|. +..+|..+..+++|++|++++|.. ..+| ..+..+++|++|+ ...+.+....+..+
T Consensus 72 ~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~----L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 72 VD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELY----LKGNELKTLPPGLL 144 (290)
T ss_dssp CC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEE----CTTSCCCCCCTTTT
T ss_pred CC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEE----CCCCCCCccChhhc
Confidence 54 667777777777776 566777677777777777777753 3333 3456666666665 44443333323333
Q ss_pred ccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeee
Q 002132 725 ESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFY 804 (961)
Q Consensus 725 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 804 (961)
..++ +|+.|+++.|..... ....+..+++|+.|++++|
T Consensus 145 ~~l~-------------------------------~L~~L~L~~N~l~~l-----------~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 145 TPTP-------------------------------KLEKLSLANNNLTEL-----------PAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp TTCT-------------------------------TCCEEECTTSCCSCC-----------CTTTTTTCTTCCEEECCSS
T ss_pred cccc-------------------------------CCCEEECCCCcCCcc-----------CHHHhcCcCCCCEEECCCC
Confidence 3344 444444444333210 0123556788999999999
Q ss_pred cCCCCCCCccccccCccEEEEeCCCC
Q 002132 805 RGNTVFPNWLMSLTNLRSLVLYGCEN 830 (961)
Q Consensus 805 ~~~~~lp~~~~~l~~L~~L~L~~~~~ 830 (961)
.+.. +|.++..+++|+.|+|++|..
T Consensus 183 ~l~~-ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 183 SLYT-IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCC-CCTTTTTTCCCSEEECCSCCB
T ss_pred cCCc-cChhhcccccCCeEEeCCCCc
Confidence 9987 999998889999999999865
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=4.7e-15 Score=153.60 Aligned_cols=130 Identities=21% Similarity=0.116 Sum_probs=89.0
Q ss_pred CCCCCceEEEeeecCCCCCCCccccccCcc---EEEEeCC-CCCCcCCC-CCCccccc-eeecccccCceEeCCcccCCc
Q 002132 792 PPPDLKELEIRFYRGNTVFPNWLMSLTNLR---SLVLYGC-ENCEQLPP-LGKLQSLE-KLSLTIMRSVKRVGDECLGIE 865 (961)
Q Consensus 792 ~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~---~L~L~~~-~~~~~l~~-l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~ 865 (961)
.+++|++|++++|.+.. +|. +..+++|+ .|++++| .+....+. ++++++|+ .|++++|. ++.++...+
T Consensus 103 ~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~--- 176 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF--- 176 (239)
T ss_dssp CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT---
T ss_pred CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc---
Confidence 34566777777777666 666 66666666 8888888 55443333 77888888 88888876 556665433
Q ss_pred ccCcCcccceeeccccccccccccccccccccccccc-cccceecccccccCcCCCCCCCCCCCccEEEEcccccc
Q 002132 866 IIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIM-PRLSSLTIARCPKLKALPDHIHQTTTLKELRIWACELL 940 (961)
Q Consensus 866 ~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~-p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L~l~~~~~l 940 (961)
.. ++|+.|+++++..++.++... +..+ ++|+.|++++|+ ++.+|.. .+++|+.|++.+|..+
T Consensus 177 --~~-~~L~~L~L~~n~~l~~i~~~~-------~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 177 --NG-TKLDAVYLNKNKYLTVIDKDA-------FGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp --TT-CEEEEEECTTCTTCCEECTTT-------TTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC---
T ss_pred --CC-CCCCEEEcCCCCCcccCCHHH-------hhccccCCcEEECCCCc-cccCChh--HhccCceeeccCccCC
Confidence 22 688888888875566654321 2356 889999998875 7788874 6788999998887653
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=3.1e-15 Score=164.51 Aligned_cols=241 Identities=17% Similarity=0.104 Sum_probs=152.4
Q ss_pred eEEecCCCCCCCCccccccCccccccCccceEEecCCcccccch-hhhccCCCcEEeecCcccccccch-hhhcccCCce
Q 002132 603 RALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLEELPE-GIGKLINMKH 680 (961)
Q Consensus 603 r~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~ 680 (961)
++++.+++. +..+|..+ ..+|++|+|++|.|+.+|. .+.+|++|++|+|++|.....+|. .+.+|++|++
T Consensus 12 ~~v~C~~~~------Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESK------VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTT------CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCC------CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 455666655 66666655 2467777777777777765 367777777777777764455554 3456666665
Q ss_pred eecCCcccccccc-ccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCC
Q 002132 681 LLNYRTDSLRYMP-VGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKK 759 (961)
Q Consensus 681 L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 759 (961)
+...+++.+..+| ..+..+++|++|+ +.++......+
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~----------------------------l~~n~l~~~~~-------------- 121 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLL----------------------------ISNTGIKHLPD-------------- 121 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEE----------------------------EEEECCSSCCC--------------
T ss_pred hhcccCCcccccCchhhhhcccccccc----------------------------ccccccccCCc--------------
Confidence 4333322233332 2344444444444 22221111000
Q ss_pred CCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeec-CCCCCC-Cccccc-cCccEEEEeCCCCCCcCCC
Q 002132 760 YLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYR-GNTVFP-NWLMSL-TNLRSLVLYGCENCEQLPP 836 (961)
Q Consensus 760 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~lp-~~~~~l-~~L~~L~L~~~~~~~~l~~ 836 (961)
..+....++..|++.++. +.. +| ..+..+ ..++.|+|++|.+....+.
T Consensus 122 ----------------------------~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~~~l~~L~L~~N~i~~i~~~ 172 (350)
T 4ay9_X 122 ----------------------------VHKIHSLQKVLLDIQDNINIHT-IERNSFVGLSFESVILWLNKNGIQEIHNS 172 (350)
T ss_dssp ----------------------------CTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred ----------------------------hhhcccchhhhhhhcccccccc-ccccchhhcchhhhhhccccccccCCChh
Confidence 001112234455554432 222 33 334444 4689999999988655555
Q ss_pred CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccC
Q 002132 837 LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKL 916 (961)
Q Consensus 837 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L 916 (961)
....++|+.|.+.++..++.++...+ ..+++|+.|+++++ .++.++.. .+.+|++|.+.+|..+
T Consensus 173 ~f~~~~L~~l~l~~~n~l~~i~~~~f-----~~l~~L~~LdLs~N-~l~~lp~~----------~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLEELPNDVF-----HGASGPVILDISRT-RIHSLPSY----------GLENLKKLRARSTYNL 236 (350)
T ss_dssp SSTTEEEEEEECTTCTTCCCCCTTTT-----TTEECCSEEECTTS-CCCCCCSS----------SCTTCCEEECTTCTTC
T ss_pred hccccchhHHhhccCCcccCCCHHHh-----ccCcccchhhcCCC-CcCccChh----------hhccchHhhhccCCCc
Confidence 66778999999998777888887654 57899999999998 67777642 5889999999999999
Q ss_pred cCCCCCCCCCCCccEEEEccccc
Q 002132 917 KALPDHIHQTTTLKELRIWACEL 939 (961)
Q Consensus 917 ~~lp~~~~~l~~L~~L~l~~~~~ 939 (961)
+.+|. +..+++|+.+++.++..
T Consensus 237 ~~lP~-l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 237 KKLPT-LEKLVALMEASLTYPSH 258 (350)
T ss_dssp CCCCC-TTTCCSCCEEECSCHHH
T ss_pred CcCCC-chhCcChhhCcCCCCcc
Confidence 99996 58899999999976443
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=1.1e-15 Score=161.73 Aligned_cols=153 Identities=24% Similarity=0.369 Sum_probs=105.6
Q ss_pred cccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccc
Q 002132 566 ICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLP 645 (961)
Q Consensus 566 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp 645 (961)
...+++|+.|.+.++.+.. ++ .+..+++|++|++++|. +..++ .++.+++|++|+|++|.++.+|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-------~~-~l~~l~~L~~L~l~~n~------l~~~~-~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-------VQ-GIQYLPNVRYLALGGNK------LHDIS-ALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-------CT-TGGGCTTCCEEECTTSC------CCCCG-GGTTCTTCCEEECTTSCCCCCC
T ss_pred cccccceeeeeeCCCCccc-------cc-ccccCCCCcEEECCCCC------CCCch-hhcCCCCCCEEECCCCccCccC
Confidence 3457788888888776431 12 26778889999999887 65554 6788889999999998888776
Q ss_pred hh-hhccCCCcEEeecCcccccccch-hhhcccCCceeecCCcccccccccc-CCCCCCCCcCCceEeCCCCCcCCCccc
Q 002132 646 ET-LCELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTDSLRYMPVG-IGRLTGLRTLDEFHVIGGGGVDGRKAC 722 (961)
Q Consensus 646 ~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~ 722 (961)
.. +.++++|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.. ++.+++|++|+ ...+.+....+.
T Consensus 102 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~----l~~n~l~~~~~~ 175 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELD----LSYNQLQSLPEG 175 (272)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE----CCSSCCCCCCTT
T ss_pred hhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEE----CCCCCcCccCHH
Confidence 65 6888999999999888 445544 468888999999988854 444433 56777777776 455544443333
Q ss_pred ccccccCCCcCCccccc
Q 002132 723 WFESLKNLKHLQVCGIR 739 (961)
Q Consensus 723 ~l~~L~~L~~L~~~~~~ 739 (961)
.+..+++|+.|++.++.
T Consensus 176 ~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhcCCccCCEEECCCCc
Confidence 34455555555554443
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=1.2e-16 Score=175.38 Aligned_cols=222 Identities=15% Similarity=0.129 Sum_probs=127.7
Q ss_pred CccEEEecCCCCCCCccchhhhHHHhhcC--CceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccc--cch
Q 002132 571 RIRSLLIDNSRTSCSYFNGEILEELFRES--TSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRK--LPE 646 (961)
Q Consensus 571 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~--~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~--Lp~ 646 (961)
.++.+.+.++... +..+..+ +.+++|++++|. +...+..+..+++|++|+|++|.++. +|.
T Consensus 48 ~~~~l~l~~~~~~---------~~~~~~~~~~~l~~L~l~~n~------l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 48 LWQTLDLTGKNLH---------PDVTGRLLSQGVIAFRCPRSF------MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp TSSEEECTTCBCC---------HHHHHHHHHTTCSEEECTTCE------ECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred hheeeccccccCC---------HHHHHhhhhccceEEEcCCcc------ccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence 4667777665422 2234444 677777777776 55555556677777777777777662 666
Q ss_pred hhhccCCCcEEeecCcccccccchhhhcccCCceeecCCcccccc--ccccCCCCCCCCcCCceEeCCCCCcCCCccccc
Q 002132 647 TLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRY--MPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWF 724 (961)
Q Consensus 647 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l 724 (961)
.+.++++|++|++++|......|..+.++++|++|++++|..+.. +|..+..++
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~------------------------ 168 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS------------------------ 168 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT------------------------
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC------------------------
Confidence 677777777777777764445666677777777777777632221 222222222
Q ss_pred ccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEee-cCCCCCccCCcchHHHHHhhCCCCC-CCceEEEe
Q 002132 725 ESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFD-EKEQGGERRKNEDDQLLLEALQPPP-DLKELEIR 802 (961)
Q Consensus 725 ~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~ 802 (961)
+ |+.|+++++ ... ...+...+..++ +|++|+++
T Consensus 169 ----~-------------------------------L~~L~l~~~~~l~----------~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 169 ----R-------------------------------LDELNLSWCFDFT----------EKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ----T-------------------------------CCEEECCCCTTCC----------HHHHHHHHHHSCTTCCEEECC
T ss_pred ----C-------------------------------CCEEcCCCCCCcC----------hHHHHHHHHhcccCCCEEEeC
Confidence 2 333333322 111 111223334445 67777777
Q ss_pred eec--CC-CCCCCccccccCccEEEEeCCCC-CC-cCCCCCCccccceeecccccCceEeCCcccCCcccCcCcccceee
Q 002132 803 FYR--GN-TVFPNWLMSLTNLRSLVLYGCEN-CE-QLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLT 877 (961)
Q Consensus 803 ~~~--~~-~~lp~~~~~l~~L~~L~L~~~~~-~~-~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~ 877 (961)
+|. +. ..+|..+..+++|+.|+|++|.. .+ .++.++++++|+.|++++|..+.. ..+ ..+..+|+|+.|+
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~---~~l~~~~~L~~L~ 278 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETL---LELGEIPTLKTLQ 278 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGG---GGGGGCTTCCEEE
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHH---HHHhcCCCCCEEe
Confidence 663 22 11455556677777777777763 32 234467778888888877752211 111 1124678888888
Q ss_pred cccc
Q 002132 878 ISSM 881 (961)
Q Consensus 878 l~~~ 881 (961)
+++|
T Consensus 279 l~~~ 282 (336)
T 2ast_B 279 VFGI 282 (336)
T ss_dssp CTTS
T ss_pred ccCc
Confidence 8876
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=1e-14 Score=154.10 Aligned_cols=196 Identities=24% Similarity=0.341 Sum_probs=138.8
Q ss_pred CceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccch-hhhccCCCcEEeecCcccccccchhh-hcccC
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLEELPEGI-GKLIN 677 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~ 677 (961)
..++.++++++. +..+|..+. .+|++|+|++|.++.+|. .+.++++|++|++++|. +..+|..+ .++++
T Consensus 16 ~~~~~l~~~~~~------l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 16 NNKNSVDCSSKK------LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKN 86 (270)
T ss_dssp TTTTEEECTTSC------CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTT
T ss_pred CCCCEEEccCCC------CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCC
Confidence 357788888887 777887664 578899999888888765 68888899999998887 66676654 67888
Q ss_pred CceeecCCccccccccc-cCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccC
Q 002132 678 MKHLLNYRTDSLRYMPV-GIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELD 756 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~ 756 (961)
|++|++++|. +..+|. .+..+++|++|+ +.++......
T Consensus 87 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~----------------------------l~~n~l~~~~------------ 125 (270)
T 2o6q_A 87 LETLWVTDNK-LQALPIGVFDQLVNLAELR----------------------------LDRNQLKSLP------------ 125 (270)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCSSCCEEE----------------------------CCSSCCCCCC------------
T ss_pred CCEEECCCCc-CCcCCHhHcccccCCCEEE----------------------------CCCCccCeeC------------
Confidence 8888888875 333332 234444444443 2222111100
Q ss_pred CCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCC-ccccccCccEEEEeCCCCCCcCC
Q 002132 757 KKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPN-WLMSLTNLRSLVLYGCENCEQLP 835 (961)
Q Consensus 757 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~~l~ 835 (961)
...+..+++|++|++++|.+.. +|. .+..+++|+.|+|++|.+....+
T Consensus 126 ------------------------------~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 126 ------------------------------PRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp ------------------------------TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ------------------------------HHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcEeCh
Confidence 1124556788888888888877 544 47789999999999998766555
Q ss_pred C-CCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccc
Q 002132 836 P-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSML 882 (961)
Q Consensus 836 ~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 882 (961)
. +.++++|++|+|++|. ++.++...+ ..+++|+.|+|++++
T Consensus 175 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~-----~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQ-LKRVPEGAF-----DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTT-----TTCTTCCEEECCSSC
T ss_pred hHhccCCCcCEEECCCCc-CCcCCHHHh-----ccccCCCEEEecCCC
Confidence 4 8889999999999986 555554332 467899999998875
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.58 E-value=6.2e-16 Score=169.57 Aligned_cols=221 Identities=17% Similarity=0.165 Sum_probs=149.5
Q ss_pred eeEEEEEeccccccccccccC--CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccc--cCcc
Q 002132 549 VRHLMLIIGREASFRVPICRV--KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLK--IPRN 624 (961)
Q Consensus 549 ~r~lsl~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~--lp~~ 624 (961)
.+++.+..+... +..+..+ ++++.|.+.++..... ++. +..+++|++|++++|. +.. +|..
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~------~~~-~~~~~~L~~L~L~~~~------l~~~~~~~~ 113 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQP------LAE-HFSPFRVQHMDLSNSV------IEVSTLHGI 113 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSC------CCS-CCCCBCCCEEECTTCE------ECHHHHHHH
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCcccccc------chh-hccCCCCCEEEccCCC------cCHHHHHHH
Confidence 455555544433 2334444 7899999988764321 122 4478999999999997 543 7788
Q ss_pred ccccCccceEEecCCccc-ccchhhhccCCCcEEeecCccccc--ccchhhhcccCCceeecCCcccccc--ccccCCCC
Q 002132 625 IEKLVHLRYLNLSCQNIR-KLPETLCELYNLEKLYITRCLYLE--ELPEGIGKLINMKHLLNYRTDSLRY--MPVGIGRL 699 (961)
Q Consensus 625 i~~L~~Lr~L~L~~~~i~-~Lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~--~p~~i~~L 699 (961)
+..+++|++|+|++|.++ ..|..++++++|++|++++|..+. .+|..+.++++|++|++++|..+.. ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 899999999999999988 678889999999999999995455 3788889999999999999832221 23323333
Q ss_pred C-CCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccC
Q 002132 700 T-GLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERR 778 (961)
Q Consensus 700 ~-~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 778 (961)
+ +|++| ++.++.. ...
T Consensus 194 ~~~L~~L----------------------------~l~~~~~-----------------------------~~~------ 210 (336)
T 2ast_B 194 SETITQL----------------------------NLSGYRK-----------------------------NLQ------ 210 (336)
T ss_dssp CTTCCEE----------------------------ECCSCGG-----------------------------GSC------
T ss_pred ccCCCEE----------------------------EeCCCcc-----------------------------cCC------
Confidence 3 33333 3322210 000
Q ss_pred CcchHHHHHhhCCCCCCCceEEEeeec-CCCCCCCccccccCccEEEEeCCCCCC--cCCCCCCccccceeecccc
Q 002132 779 KNEDDQLLLEALQPPPDLKELEIRFYR-GNTVFPNWLMSLTNLRSLVLYGCENCE--QLPPLGKLQSLEKLSLTIM 851 (961)
Q Consensus 779 ~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~lp~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~ 851 (961)
...+...+..+++|++|++++|. +....+..+..+++|+.|+|++|.... .+..++++++|+.|++++|
T Consensus 211 ----~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 211 ----KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ----HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ----HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 12233334456778888888887 443356677788889999988885221 1224778889999999887
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=3.6e-15 Score=154.51 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=39.5
Q ss_pred ceeEEecCCCCCCCCccccccCc-cccccCccceEEecCCc-ccccch-hhhccCCCcEEeecC-cccccccc-hhhhcc
Q 002132 601 SLRALDFWGSYDVSPFWTLKIPR-NIEKLVHLRYLNLSCQN-IRKLPE-TLCELYNLEKLYITR-CLYLEELP-EGIGKL 675 (961)
Q Consensus 601 ~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~-i~~Lp~-~i~~L~~L~~L~L~~-~~~l~~lp-~~i~~L 675 (961)
.|++|++++|. +..+|. .+..+++|++|++++|. ++.+|. .+.++++|++|++++ |. +..+| ..+..+
T Consensus 32 ~l~~L~l~~n~------l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIETH------LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKEL 104 (239)
T ss_dssp TCCEEEEESCC------CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECC
T ss_pred cccEEEEeCCc------ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCC
Confidence 45555555555 444443 44555555555555554 554443 345555555555555 33 33343 234455
Q ss_pred cCCceeecCCc
Q 002132 676 INMKHLLNYRT 686 (961)
Q Consensus 676 ~~L~~L~l~~~ 686 (961)
++|++|++++|
T Consensus 105 ~~L~~L~l~~n 115 (239)
T 2xwt_C 105 PLLKFLGIFNT 115 (239)
T ss_dssp TTCCEEEEEEE
T ss_pred CCCCEEeCCCC
Confidence 55555555554
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=8.6e-15 Score=157.68 Aligned_cols=193 Identities=17% Similarity=0.230 Sum_probs=129.0
Q ss_pred ccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccch
Q 002132 567 CRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPE 646 (961)
Q Consensus 567 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~ 646 (961)
..+++|+.|.+.++.+.. ++ .+..+++|++|+|++|. +..++. +..+++|++|+|++|.++.+|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-------l~-~~~~l~~L~~L~L~~n~------i~~~~~-~~~l~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-------IE-GVQYLNNLIGLELKDNQ------ITDLAP-LKNLTKITELELSGNPLKNVS- 101 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-------CT-TGGGCTTCCEEECCSSC------CCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred HHcCCcCEEEeeCCCccC-------ch-hhhccCCCCEEEccCCc------CCCChh-HccCCCCCEEEccCCcCCCch-
Confidence 356788888888776432 12 26778889999998887 777776 888889999999988888876
Q ss_pred hhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCccccccc
Q 002132 647 TLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFES 726 (961)
Q Consensus 647 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~ 726 (961)
.+.++++|++|++++|. +..+|. +..+++|++|++++|. +..++. ++.+++|+.|+ ...+.+....+ +..
T Consensus 102 ~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~----l~~n~l~~~~~--l~~ 171 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLS----IGNAQVSDLTP--LAN 171 (308)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEE----CCSSCCCCCGG--GTT
T ss_pred hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEE----ccCCcCCCChh--hcC
Confidence 58888899999998887 666765 8888899999998885 444544 77777787777 44443332211 333
Q ss_pred ccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecC
Q 002132 727 LKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRG 806 (961)
Q Consensus 727 L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 806 (961)
+++|+ .|+++.|..... ..+..+++|+.|++++|.+
T Consensus 172 l~~L~-------------------------------~L~l~~n~l~~~-------------~~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 172 LSKLT-------------------------------TLKADDNKISDI-------------SPLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CTTCC-------------------------------EEECCSSCCCCC-------------GGGGGCTTCCEEECTTSCC
T ss_pred CCCCC-------------------------------EEECCCCccCcC-------------hhhcCCCCCCEEEccCCcc
Confidence 44444 444443332210 0134456677777777666
Q ss_pred CCCCCCccccccCccEEEEeCCCCC
Q 002132 807 NTVFPNWLMSLTNLRSLVLYGCENC 831 (961)
Q Consensus 807 ~~~lp~~~~~l~~L~~L~L~~~~~~ 831 (961)
.. ++ .+..+++|+.|+|++|.+.
T Consensus 208 ~~-~~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 208 SD-VS-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CB-CG-GGTTCTTCCEEEEEEEEEE
T ss_pred Cc-cc-cccCCCCCCEEEccCCeee
Confidence 65 44 2566777777777777553
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=154.64 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=89.6
Q ss_pred cCCCccEEEecCCCCCCCccchhhhHHH--hhcCCceeEEecCCCCCCCCcccc-ccCccc--cccCccceEEecCCccc
Q 002132 568 RVKRIRSLLIDNSRTSCSYFNGEILEEL--FRESTSLRALDFWGSYDVSPFWTL-KIPRNI--EKLVHLRYLNLSCQNIR 642 (961)
Q Consensus 568 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~--~~~~~~Lr~L~L~~~~~~~~~~~~-~lp~~i--~~L~~Lr~L~L~~~~i~ 642 (961)
....++.+.+.+..... .....+ +..++.|++|++++|. +. ..|..+ ..+++|++|+|++|.++
T Consensus 62 ~~~~l~~l~l~~~~~~~-----~~~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~~~~~~L~~L~Ls~n~i~ 130 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPA-----QLLVGALRVLAYSRLKELTLEDLK------ITGTMPPLPLEATGLALSSLRLRNVSWA 130 (310)
T ss_dssp SSCCCCEEEECSCCCBH-----HHHHHHHHHHHHSCCCEEEEESCC------CBSCCCCCSSSCCCBCCSSCEEESCCCS
T ss_pred hhcceeEEEEeCCcCCH-----HHHHHHHHhcccCceeEEEeeCCE------eccchhhhhhhccCCCCCEEEeeccccc
Confidence 34457788887765432 112211 2245679999999998 44 456666 89999999999999988
Q ss_pred cc-c----hhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCcccccc--cc--ccCCCCCCCCcCC
Q 002132 643 KL-P----ETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRY--MP--VGIGRLTGLRTLD 706 (961)
Q Consensus 643 ~L-p----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~--~p--~~i~~L~~L~~L~ 706 (961)
.. | ..+..+++|++|++++|......|..+..+++|++|++++|..... ++ ..++.+++|++|+
T Consensus 131 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 131 TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence 52 2 3456799999999999995555567888999999999999964321 22 2235566666665
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=5.2e-17 Score=193.34 Aligned_cols=359 Identities=14% Similarity=0.113 Sum_probs=200.6
Q ss_pred ccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccc--cCccccccCccceEEecCCcccc-
Q 002132 567 CRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLK--IPRNIEKLVHLRYLNLSCQNIRK- 643 (961)
Q Consensus 567 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~--lp~~i~~L~~Lr~L~L~~~~i~~- 643 (961)
..+++|+.|.+.++.. .+..+..+...+++|++|+|++|.. +.. ++..+.++++|++|+|++|.++.
T Consensus 102 ~~~~~L~~L~L~~~~~-----~~~~~~~l~~~~~~L~~L~L~~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVV-----TDDCLELIAKSFKNFKVLVLSSCEG-----FSTDGLAAIAATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp HHCTTCCEEEEESCBC-----CHHHHHHHHHHCTTCCEEEEESCEE-----EEHHHHHHHHHHCTTCCEEECTTCEEECC
T ss_pred HhCCCCCeEEeeCcEE-----cHHHHHHHHHhCCCCcEEeCCCcCC-----CCHHHHHHHHHhCCCCCEEeCcCCccCCc
Confidence 4688999999998753 3445555555799999999999952 333 55556689999999999998663
Q ss_pred ----cchhhhccCCCcEEeecCcc-cc--cccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCC---C
Q 002132 644 ----LPETLCELYNLEKLYITRCL-YL--EELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIG---G 713 (961)
Q Consensus 644 ----Lp~~i~~L~~L~~L~L~~~~-~l--~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~---~ 713 (961)
++.....+++|++|++++|. .+ ..++.-+..+++|++|++++|.....+|..+..+++|+.|....... .
T Consensus 172 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp CGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred chHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 44444578899999999986 11 22333345679999999999866666777788888898886311100 0
Q ss_pred CCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCC
Q 002132 714 GGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPP 793 (961)
Q Consensus 714 ~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 793 (961)
+.+.. .+..+..+++|+.|. +... .. .......+..+++|+.|+++++... ...+...+..+
T Consensus 252 ~~~~~-l~~~l~~~~~L~~Ls--~~~~---~~--~~~l~~~~~~~~~L~~L~L~~~~l~----------~~~l~~~~~~~ 313 (594)
T 2p1m_B 252 DVYSG-LSVALSGCKELRCLS--GFWD---AV--PAYLPAVYSVCSRLTTLNLSYATVQ----------SYDLVKLLCQC 313 (594)
T ss_dssp HHHHH-HHHHHHTCTTCCEEE--CCBT---CC--GGGGGGGHHHHTTCCEEECTTCCCC----------HHHHHHHHTTC
T ss_pred hhHHH-HHHHHhcCCCccccc--CCcc---cc--hhhHHHHHHhhCCCCEEEccCCCCC----------HHHHHHHHhcC
Confidence 00000 111344555555542 1111 00 1112223346789999999987643 23344456677
Q ss_pred CCCceEEEeeecCCCCCCCccccccCccEEEEeCCCC-----CCcCC-----CC-CCccccceeecccccCceEeCCccc
Q 002132 794 PDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCEN-----CEQLP-----PL-GKLQSLEKLSLTIMRSVKRVGDECL 862 (961)
Q Consensus 794 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~-----~~~l~-----~l-~~l~~L~~L~L~~~~~l~~~~~~~~ 862 (961)
++|++|++++|.....++.....+++|+.|+|.+|.. ...+. .+ ..+++|+.|.+.++. ++..+....
T Consensus 314 ~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l 392 (594)
T 2p1m_B 314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ-MTNAALITI 392 (594)
T ss_dssp TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC-CCHHHHHHH
T ss_pred CCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC-cCHHHHHHH
Confidence 8899999988732111222333578888888855310 01111 11 125566666443322 211100000
Q ss_pred CCcccCcCcccceeecc-----ccccccccccccc---------------------cccccccc-cccccceeccccccc
Q 002132 863 GIEIIDAFPKLKSLTIS-----SMLELEEWDYGIT---------------------RTGNTVIN-IMPRLSSLTIARCPK 915 (961)
Q Consensus 863 ~~~~~~~f~~L~~L~l~-----~~~~L~~~~~~~~---------------------~~~~~~~~-~~p~L~~L~l~~c~~ 915 (961)
...+|+|+.|+++ +|..++..+...+ ..+...+. .+++|+.|++++|..
T Consensus 393 ----~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i 468 (594)
T 2p1m_B 393 ----ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGD 468 (594)
T ss_dssp ----HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCS
T ss_pred ----HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCC
Confidence 0134455555554 2222221110000 00000011 367888888888762
Q ss_pred CcC-CCCCCCCCCCccEEEEccccccccccc-CCCCcccceEEec
Q 002132 916 LKA-LPDHIHQTTTLKELRIWACELLGKHYR-GGTEKTGLKYHTF 958 (961)
Q Consensus 916 L~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~l~~~~~ 958 (961)
-.. ++.....+++|+.|++++|+.....+. .....++|+.+.+
T Consensus 469 ~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 469 SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp SHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred cHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 111 111114479999999999997443332 2223566666654
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=2.2e-16 Score=176.55 Aligned_cols=250 Identities=17% Similarity=0.109 Sum_probs=130.7
Q ss_pred cccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcc-------ccccCccceE
Q 002132 562 FRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRN-------IEKLVHLRYL 634 (961)
Q Consensus 562 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~-------i~~L~~Lr~L 634 (961)
+...+..+++|++|.+.++.+.. .....+...+..+++|++|+|++|.... ....+|.. +..+++|++|
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~~l~~~~~L~~L~Ls~~~~~~--l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGT--EAARWLSENIASKKDLEIAEFSDIFTGR--VKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECH--HHHHHHHHTTTTCTTCCEEECCSCCTTS--CGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHhcCCCccEEECCCCCCCH--HHHHHHHHHHHhCCCccEEeCcccccCc--cccchhHHHHHHHHHHhhCCcccEE
Confidence 34445567777777777765321 0111123345667777777777764100 01122333 3567777777
Q ss_pred EecCCcccc-----cchhhhccCCCcEEeecCccccc----ccchhhhcc---------cCCceeecCCcccc-cccc--
Q 002132 635 NLSCQNIRK-----LPETLCELYNLEKLYITRCLYLE----ELPEGIGKL---------INMKHLLNYRTDSL-RYMP-- 693 (961)
Q Consensus 635 ~L~~~~i~~-----Lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~L---------~~L~~L~l~~~~~~-~~~p-- 693 (961)
+|++|.++. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|... ..+|
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 777777764 66677777777777777776321 233333344 67777777776532 1222
Q ss_pred -ccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCC
Q 002132 694 -VGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKE 772 (961)
Q Consensus 694 -~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 772 (961)
..+..+++|++| ++.+|..... .........+..+++|+.|++++|...
T Consensus 180 ~~~l~~~~~L~~L----------------------------~L~~n~l~~~--g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 180 AKTFQSHRLLHTV----------------------------KMVQNGIRPE--GIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHHCTTCCEE----------------------------ECCSSCCCHH--HHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred HHHHHhCCCcCEE----------------------------ECcCCCCCHh--HHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 123333333333 3333321100 000011113445556666666655432
Q ss_pred CCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCC----CCCccc--cccCccEEEEeCCCCCC----cCCC-C-CCc
Q 002132 773 QGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTV----FPNWLM--SLTNLRSLVLYGCENCE----QLPP-L-GKL 840 (961)
Q Consensus 773 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----lp~~~~--~l~~L~~L~L~~~~~~~----~l~~-l-~~l 840 (961)
. .....++..+..+++|++|+|++|.+... +|.++. .+++|+.|+|++|.+.. .+|. + .++
T Consensus 230 ~-------~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 230 H-------LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp H-------HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred c-------HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 1 01233445566666777777777665542 234442 26677777777776654 2433 3 456
Q ss_pred cccceeeccccc
Q 002132 841 QSLEKLSLTIMR 852 (961)
Q Consensus 841 ~~L~~L~L~~~~ 852 (961)
|+|++|+|++|.
T Consensus 303 ~~L~~L~l~~N~ 314 (386)
T 2ca6_A 303 PDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTSB
T ss_pred CCceEEEccCCc
Confidence 777777777665
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=1.5e-16 Score=178.04 Aligned_cols=225 Identities=17% Similarity=0.132 Sum_probs=130.6
Q ss_pred HHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc----ccchhh-------hccCCCcEEeecC
Q 002132 593 EELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR----KLPETL-------CELYNLEKLYITR 661 (961)
Q Consensus 593 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~----~Lp~~i-------~~L~~L~~L~L~~ 661 (961)
...+..+++|++|+|++|. ++......++..+.++++|++|+|++|.+. .+|..+ .++++|++|+|++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3447788999999999987 111111124556778999999999987554 345444 6889999999999
Q ss_pred ccccc----ccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccc---------c
Q 002132 662 CLYLE----ELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESL---------K 728 (961)
Q Consensus 662 ~~~l~----~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L---------~ 728 (961)
|.... .+|..+.++++|++|++++|......+..+.. .+..+ +
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~------------------------~l~~l~~~~~~~~~~ 159 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR------------------------ALQELAVNKKAKNAP 159 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH------------------------HHHHHHHHHHHHTCC
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH------------------------HHHHHhhhhhcccCC
Confidence 98444 37888889999999999988642211111111 11111 3
Q ss_pred CCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHh-hCCCCCCCceEEEeeecCC
Q 002132 729 NLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLE-ALQPPPDLKELEIRFYRGN 807 (961)
Q Consensus 729 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~ 807 (961)
+|+.|++.+|..... ........+..+++|+.|++++|.... .....+.. .+..+++|++|+|++|.+.
T Consensus 160 ~L~~L~L~~n~l~~~---~~~~l~~~l~~~~~L~~L~L~~n~l~~-------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 160 PLRSIICGRNRLENG---SMKEWAKTFQSHRLLHTVKMVQNGIRP-------EGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp CCCEEECCSSCCTGG---GHHHHHHHHHHCTTCCEEECCSSCCCH-------HHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCcEEECCCCCCCcH---HHHHHHHHHHhCCCcCEEECcCCCCCH-------hHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 444444433332100 000111134455667777777665431 00111233 5566667777777776652
Q ss_pred ----CCCCCccccccCccEEEEeCCCCCCc----CCC-C--CCccccceeeccccc
Q 002132 808 ----TVFPNWLMSLTNLRSLVLYGCENCEQ----LPP-L--GKLQSLEKLSLTIMR 852 (961)
Q Consensus 808 ----~~lp~~~~~l~~L~~L~L~~~~~~~~----l~~-l--~~l~~L~~L~L~~~~ 852 (961)
..+|.++..+++|+.|+|++|.+... ++. + +.+++|+.|+|++|.
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 22556666667777777777765432 222 2 346667777776665
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=2.5e-13 Score=141.60 Aligned_cols=174 Identities=18% Similarity=0.143 Sum_probs=119.6
Q ss_pred CceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccch-hhhccCCCcEEeecCcccccccchhhhcccCC
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLEELPEGIGKLINM 678 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 678 (961)
...++++++++. +..+|..+. .+|++|+|++|.++.++. .+.++++|++|++++|......|..+..+++|
T Consensus 14 ~~~~~l~~~~~~------l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQGKS------LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGGTEEECTTCC------CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCeEEecCCCC------ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence 457888998887 888887765 589999999999887754 58889999999999988444445557888999
Q ss_pred ceeecCCcccccccc-ccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCC
Q 002132 679 KHLLNYRTDSLRYMP-VGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDK 757 (961)
Q Consensus 679 ~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~ 757 (961)
++|++++|.. ..+| ..+..+++|++|+ +.++..... +
T Consensus 86 ~~L~L~~n~l-~~~~~~~~~~l~~L~~L~----------------------------L~~N~l~~~-~------------ 123 (251)
T 3m19_A 86 GTLGLANNQL-ASLPLGVFDHLTQLDKLY----------------------------LGGNQLKSL-P------------ 123 (251)
T ss_dssp CEEECTTSCC-CCCCTTTTTTCTTCCEEE----------------------------CCSSCCCCC-C------------
T ss_pred CEEECCCCcc-cccChhHhcccCCCCEEE----------------------------cCCCcCCCc-C------------
Confidence 9999988863 3333 2344444444444 222211110 0
Q ss_pred CCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC-
Q 002132 758 KKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP- 836 (961)
Q Consensus 758 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~- 836 (961)
...+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+....+.
T Consensus 124 -----------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 124 -----------------------------SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp -----------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -----------------------------hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 01234456777777777777762333677888888888888877655543
Q ss_pred CCCccccceeeccccc
Q 002132 837 LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 837 l~~l~~L~~L~L~~~~ 852 (961)
+..+++|+.|+|.+|+
T Consensus 175 ~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEECCSCC
T ss_pred HhCCCCCCEEEeeCCc
Confidence 7788888888888876
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=2.6e-13 Score=141.58 Aligned_cols=176 Identities=18% Similarity=0.241 Sum_probs=124.6
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCcccccch-h
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIRKLPE-T 647 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~Lp~-~ 647 (961)
...+.+.+.++... .++.. -.+.|+.|+|++|. +..++ ..+.++++|++|+|++|.++.++. .
T Consensus 14 ~~~~~l~~~~~~l~------~~p~~---~~~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 14 EGKKEVDCQGKSLD------SVPSG---IPADTEKLDLQSTG------LATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp GGGTEEECTTCCCS------SCCSC---CCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCeEEecCCCCcc------ccCCC---CCCCCCEEEccCCC------cCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 45778888887643 12222 23689999999998 66665 468999999999999999997765 4
Q ss_pred hhccCCCcEEeecCcccccccc-hhhhcccCCceeecCCcccccccccc-CCCCCCCCcCCceEeCCCCCcCCCcccccc
Q 002132 648 LCELYNLEKLYITRCLYLEELP-EGIGKLINMKHLLNYRTDSLRYMPVG-IGRLTGLRTLDEFHVIGGGGVDGRKACWFE 725 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~ 725 (961)
+.++++|++|++++|. +..+| ..+..+++|++|++++|. +..+|.. +..+++|++|+ ...+
T Consensus 79 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~----Ls~N----------- 141 (251)
T 3m19_A 79 FDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELR----LNTN----------- 141 (251)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE----CCSS-----------
T ss_pred hccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEE----CcCC-----------
Confidence 7999999999999998 55555 557899999999999996 4444443 45555555554 2222
Q ss_pred cccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeec
Q 002132 726 SLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYR 805 (961)
Q Consensus 726 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 805 (961)
...... ...+..+++|+.|+|++|.
T Consensus 142 -------------~l~~~~------------------------------------------~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 142 -------------QLQSIP------------------------------------------AGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp -------------CCCCCC------------------------------------------TTTTTTCTTCCEEECCSSC
T ss_pred -------------cCCccC------------------------------------------HHHcCcCcCCCEEECCCCc
Confidence 111100 0123445677788888887
Q ss_pred CCCCCCCccccccCccEEEEeCCCCCC
Q 002132 806 GNTVFPNWLMSLTNLRSLVLYGCENCE 832 (961)
Q Consensus 806 ~~~~lp~~~~~l~~L~~L~L~~~~~~~ 832 (961)
+....|..+..+++|+.|+|++|.+..
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 777334467788899999999887643
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=149.24 Aligned_cols=105 Identities=15% Similarity=0.078 Sum_probs=71.3
Q ss_pred CceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc-ccchhh--hccCCCcEEeecCcccccccc----hhh
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR-KLPETL--CELYNLEKLYITRCLYLEELP----EGI 672 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-~Lp~~i--~~L~~L~~L~L~~~~~l~~lp----~~i 672 (961)
..++.|.+.++.. +...+..++. ...+.+|++|++++|.++ ..|..+ .++++|++|++++|......| ..+
T Consensus 64 ~~l~~l~l~~~~~-~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQV-PAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCC-BHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcC-CHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 4467788877651 1100111222 224567999999999887 556666 889999999999998544433 345
Q ss_pred hcccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 673 GKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 673 ~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
..+++|++|++++|......|..++.+++|++|+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 175 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD 175 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE
Confidence 6788999999999875444455677777777776
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=2.2e-15 Score=166.58 Aligned_cols=249 Identities=14% Similarity=0.061 Sum_probs=142.4
Q ss_pred hHHHhhcCCceeEEecCCCCCCCCccccccC-----ccccccC-ccceEEecCCccccc-chhhhcc-----CCCcEEee
Q 002132 592 LEELFRESTSLRALDFWGSYDVSPFWTLKIP-----RNIEKLV-HLRYLNLSCQNIRKL-PETLCEL-----YNLEKLYI 659 (961)
Q Consensus 592 ~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-----~~i~~L~-~Lr~L~L~~~~i~~L-p~~i~~L-----~~L~~L~L 659 (961)
++.++...+.|++|+|++|. +...+ ..+.+++ +|++|+|++|.++.. +..+..+ ++|++|++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHhCCCCceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence 45556677779999999998 66655 5677888 899999999998865 5566665 89999999
Q ss_pred cCcccccccchhhhc----c-cCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccc-cCCCcC
Q 002132 660 TRCLYLEELPEGIGK----L-INMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESL-KNLKHL 733 (961)
Q Consensus 660 ~~~~~l~~lp~~i~~----L-~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L-~~L~~L 733 (961)
++|......+..+.. + ++|++|++++|......+..+.. .+..+ ++|+.|
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~------------------------~l~~~~~~L~~L 143 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ------------------------AFSNLPASITSL 143 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH------------------------HHTTSCTTCCEE
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH------------------------HHHhCCCceeEE
Confidence 999844444554444 3 89999999998632221111111 11111 233334
Q ss_pred CccccccCCCCCChhhhhccccCCC-CCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCC-CCCceEEEeeecCCCC--
Q 002132 734 QVCGIRRLGDVSDVGEAKRLELDKK-KYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPP-PDLKELEIRFYRGNTV-- 809 (961)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~-- 809 (961)
++.+|...+.. . ......+... .+|+.|++++|.... .....+...+... ++|++|+|++|.+...
T Consensus 144 ~Ls~N~l~~~~--~-~~l~~~l~~~~~~L~~L~Ls~n~l~~-------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~ 213 (362)
T 3goz_A 144 NLRGNDLGIKS--S-DELIQILAAIPANVNSLNLRGNNLAS-------KNCAELAKFLASIPASVTSLDLSANLLGLKSY 213 (362)
T ss_dssp ECTTSCGGGSC--H-HHHHHHHHTSCTTCCEEECTTSCGGG-------SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred EccCCcCCHHH--H-HHHHHHHhcCCccccEeeecCCCCch-------hhHHHHHHHHHhCCCCCCEEECCCCCCChhHH
Confidence 44333221110 0 0111112222 267777776665432 1123334444455 4788888888776542
Q ss_pred --CCCcccc-ccCccEEEEeCCCCCCcCC-----CCCCccccceeecccccCceEeCCcccC--CcccCcCcccceeecc
Q 002132 810 --FPNWLMS-LTNLRSLVLYGCENCEQLP-----PLGKLQSLEKLSLTIMRSVKRVGDECLG--IEIIDAFPKLKSLTIS 879 (961)
Q Consensus 810 --lp~~~~~-l~~L~~L~L~~~~~~~~l~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~--~~~~~~f~~L~~L~l~ 879 (961)
++..+.. .++|+.|+|++|.+.+.-+ .+..+++|+.|+|++|. +..+...... ...+..+++|+.|+++
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecC
Confidence 2333333 3578888888887654322 24667778888887775 2222211000 0011355667777777
Q ss_pred cc
Q 002132 880 SM 881 (961)
Q Consensus 880 ~~ 881 (961)
++
T Consensus 293 ~N 294 (362)
T 3goz_A 293 GK 294 (362)
T ss_dssp SC
T ss_pred CC
Confidence 66
No 104
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=7.8e-12 Score=139.53 Aligned_cols=299 Identities=14% Similarity=-0.018 Sum_probs=181.1
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhc------CCeEEEEEeCCcc-cH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRK------FDKLLWVCVSDPF-EQ 254 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~wv~~s~~~-~~ 254 (961)
+..++||+.+++++..++..... ....+.+.|+|++|+||||||+.+++...-... ...++|+++.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 36799999999999988864321 123468999999999999999999985422111 3457888887766 88
Q ss_pred HHHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhh-HHhhhCCCCCcEEEEEccchhh
Q 002132 255 FRVAKAIAEALGIPSS--NLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPF-YLCLKNGLHGSKILVTTRKKSV 331 (961)
Q Consensus 255 ~~~~~~i~~~l~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~iivTtR~~~~ 331 (961)
..++..++.++..... .......+...+.+.+..++.+|||||++......+... ...+.....+..||+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 8889999988832221 122345667777788877766999999976532222233 3333332267889999987532
Q ss_pred hh----hhccCCcceEEcCCCCHHHHHHHHHHHHcC-CCCCCChhhHHHHHHHHHhhcC---CCch-hHHHHHHhh--cc
Q 002132 332 AS----MMGSTDTDIITVMELTEEECWSLFKRLAFF-GPSINDCEKLEQIGRRIAGKFK---GLPL-AAKTIGSLM--RS 400 (961)
Q Consensus 332 ~~----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---G~PL-ai~~~~~~l--~~ 400 (961)
.. .....-...+.+++++.++..++|...+.. ....... .+..+.|++.|+ |.|. |+..+-... ..
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 11 111110148999999999999999987531 1111111 234566777777 9887 333333222 21
Q ss_pred ---CCCHHHHHHHhcCcccchhhhhhhHHHHHHHhhcCCChhhHHHHhhhccCCCCCccChHHHHHHHHHcCCcccCCCC
Q 002132 401 ---KQIEEEWERISNSDLWRVEEMEKGVLSSLLLSYNDLPSKVKICFSYCAVFPKNYNIKKDELLTLWMAQGYLSAKQNK 477 (961)
Q Consensus 401 ---~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li~~w~a~g~i~~~~~~ 477 (961)
.-+.+.+....... ....+.-+++.|+.+.+..+..++....+..+. +......-..| +. .
T Consensus 254 ~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~----~ 317 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK----P 317 (384)
T ss_dssp SSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----C
T ss_pred CCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----C
Confidence 12455555443321 123456678889988887777666611101111 11111111222 11 1
Q ss_pred cHHHHHHHHHHHHHhCCCcccccc
Q 002132 478 EMETIGEEYFSILASRSFFQEFEK 501 (961)
Q Consensus 478 ~~~~~~~~~~~~L~~~~li~~~~~ 501 (961)
.......+++..|..+++++....
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEEec
Confidence 122445788999999999987543
No 105
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.44 E-value=1.2e-11 Score=138.23 Aligned_cols=299 Identities=14% Similarity=0.051 Sum_probs=181.2
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh---c-CCeEEEEEeCCcccHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR---K-FDKLLWVCVSDPFEQFRV 257 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~s~~~~~~~~ 257 (961)
+..++||+.+++++..++..... ....+.+.|+|++|+||||||+.+++...... . -..++|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 46799999999999999865321 12456789999999999999999998542110 1 235788888888888999
Q ss_pred HHHHHHHcCCCCCCC-CCHHHHHHHHHHHhC--CceEEEEEeCCCCCCcc--ChhhhHHhhhCC-----CCCcEEEEEcc
Q 002132 258 AKAIAEALGIPSSNL-GEFQSLLKLISESIT--GKRFLLVLDDVWDGDCI--KWEPFYLCLKNG-----LHGSKILVTTR 327 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~-~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~--~~~~l~~~l~~~-----~~gs~iivTtR 327 (961)
+..++.+++...+.. .....+...+.+.+. +++.+|||||++..... ..+.+...+... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 999999997654322 335566666666663 56899999999765322 223333333211 34567888887
Q ss_pred chhhhh----hhc-cCCcceEEcCCCCHHHHHHHHHHHHcCC-CCCCChhhHHHHHHHHHhhcC---CCchhH-HHHHHh
Q 002132 328 KKSVAS----MMG-STDTDIITVMELTEEECWSLFKRLAFFG-PSINDCEKLEQIGRRIAGKFK---GLPLAA-KTIGSL 397 (961)
Q Consensus 328 ~~~~~~----~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---G~PLai-~~~~~~ 397 (961)
...... ... ......+.+++++.++..+++.+.+... ...... .+..+.|++.++ |.|..+ ..+...
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 653211 111 1111478999999999999998875310 111111 234566777777 999433 332222
Q ss_pred hc-----cC--CCHHHHHHHhcCcccchhhhhhhHHHHHHHhhcCCChhhHHHHhhhc-cCCCCCccChHHHHHHHH---
Q 002132 398 MR-----SK--QIEEEWERISNSDLWRVEEMEKGVLSSLLLSYNDLPSKVKICFSYCA-VFPKNYNIKKDELLTLWM--- 466 (961)
Q Consensus 398 l~-----~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~-~fp~~~~i~~~~Li~~w~--- 466 (961)
.. .. -+.+.+....... ....+.-++..|+.+.+..+...+ ++.....+....+.+...
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 11 11 1344444433221 122355677889998887776666 443222444454444321
Q ss_pred -HcCCcccCCCCcHHHHHHHHHHHHHhCCCccccc
Q 002132 467 -AQGYLSAKQNKEMETIGEEYFSILASRSFFQEFE 500 (961)
Q Consensus 467 -a~g~i~~~~~~~~~~~~~~~~~~L~~~~li~~~~ 500 (961)
..| .. .........+++.|...|+++...
T Consensus 323 ~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 323 STLG-LE----HVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHTT-CC----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhcC-CC----CCCHHHHHHHHHHHHhCCCeEEEe
Confidence 123 11 112345678999999999998754
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=3e-14 Score=157.48 Aligned_cols=240 Identities=13% Similarity=0.031 Sum_probs=149.6
Q ss_pred ccCCCccEEEecCCCCCCCccchhhhHHHhhcCC-ceeEEecCCCCCCCCcccccc-Ccccccc-----CccceEEecCC
Q 002132 567 CRVKRIRSLLIDNSRTSCSYFNGEILEELFREST-SLRALDFWGSYDVSPFWTLKI-PRNIEKL-----VHLRYLNLSCQ 639 (961)
Q Consensus 567 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L-----~~Lr~L~L~~~ 639 (961)
...++|+.|.+.++.+... ....+...+..++ .|++|+|++|. +... +..+..+ ++|++|+|++|
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSI--STVELIQAFANTPASVTSLNLSGNS------LGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp TSCTTCCEEECTTSCGGGS--CHHHHHHHHHTCCTTCCEEECCSSC------GGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred hCCCCceEEEccCCCCChH--HHHHHHHHHHhCCCceeEEECcCCC------CCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 3345599999999875421 1122335678888 99999999998 5554 4455554 99999999999
Q ss_pred cccccch-h----hhcc-CCCcEEeecCcccccccchhhh----c-ccCCceeecCCccccc----cccccCCCCC-CCC
Q 002132 640 NIRKLPE-T----LCEL-YNLEKLYITRCLYLEELPEGIG----K-LINMKHLLNYRTDSLR----YMPVGIGRLT-GLR 703 (961)
Q Consensus 640 ~i~~Lp~-~----i~~L-~~L~~L~L~~~~~l~~lp~~i~----~-L~~L~~L~l~~~~~~~----~~p~~i~~L~-~L~ 703 (961)
.++..+. . +..+ ++|++|++++|.....-+..+. . .++|++|++++|.... .++..+..+. +|+
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 9985543 3 4455 8999999999994333333443 3 2699999999996432 2222233333 455
Q ss_pred cCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCC-CCCCeEEEEeecCCCCCccCCcch
Q 002132 704 TLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKK-KYLSCLRLSFDEKEQGGERRKNED 782 (961)
Q Consensus 704 ~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~ 782 (961)
+|+ +.+|...... .......+..+ ++|+.|++++|..... .
T Consensus 171 ~L~----------------------------Ls~n~l~~~~---~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-------~ 212 (362)
T 3goz_A 171 SLN----------------------------LRGNNLASKN---CAELAKFLASIPASVTSLDLSANLLGLK-------S 212 (362)
T ss_dssp EEE----------------------------CTTSCGGGSC---HHHHHHHHHTSCTTCCEEECTTSCGGGS-------C
T ss_pred Eee----------------------------ecCCCCchhh---HHHHHHHHHhCCCCCCEEECCCCCCChh-------H
Confidence 544 3333221110 01111122333 4677777776654321 1
Q ss_pred HHHHHhhCCC-CCCCceEEEeeecCCCCCC----CccccccCccEEEEeCCCCCCc-------C-CCCCCccccceeecc
Q 002132 783 DQLLLEALQP-PPDLKELEIRFYRGNTVFP----NWLMSLTNLRSLVLYGCENCEQ-------L-PPLGKLQSLEKLSLT 849 (961)
Q Consensus 783 ~~~~~~~l~~-~~~L~~L~l~~~~~~~~lp----~~~~~l~~L~~L~L~~~~~~~~-------l-~~l~~l~~L~~L~L~ 849 (961)
...+...+.. +++|++|+|++|.+....+ ..+..+++|+.|+|++|.+... + ..+.++++|+.|+++
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 2334444444 4589999999888766222 2334678899999998873221 1 236788899999999
Q ss_pred ccc
Q 002132 850 IMR 852 (961)
Q Consensus 850 ~~~ 852 (961)
+|.
T Consensus 293 ~N~ 295 (362)
T 3goz_A 293 GKE 295 (362)
T ss_dssp SCB
T ss_pred CCc
Confidence 887
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=1.3e-13 Score=161.27 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=39.2
Q ss_pred cCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 598 ESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 598 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
.++.|+.|++++|. +..+| .+..|++|++|+|++|.++.+|. +.++++|+.|+|++|. +..+| .+..|++
T Consensus 41 ~L~~L~~L~l~~n~------i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~ 110 (605)
T 1m9s_A 41 ELNSIDQIIANNSD------IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKK 110 (605)
T ss_dssp HHTTCCCCBCTTCC------CCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTT
T ss_pred cCCCCCEEECcCCC------CCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCC
Confidence 34455555555554 44443 34455555555555555554444 4555555555555554 33333 3455555
Q ss_pred CceeecCCc
Q 002132 678 MKHLLNYRT 686 (961)
Q Consensus 678 L~~L~l~~~ 686 (961)
|++|++++|
T Consensus 111 L~~L~Ls~N 119 (605)
T 1m9s_A 111 LKSLSLEHN 119 (605)
T ss_dssp CCEEECTTS
T ss_pred CCEEEecCC
Confidence 555555554
No 108
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=6.5e-12 Score=140.49 Aligned_cols=324 Identities=15% Similarity=0.071 Sum_probs=192.6
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhc-CCeEEEEEeCCcccHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRK-FDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~ 260 (961)
+..++||+.+++++..++.....+..+..+.+.|+|++|+||||||+.+++.. ... -..++|++++...+...++..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 36799999999999998875321101233489999999999999999999843 332 135778888888888899999
Q ss_pred HHHHcCCCCCC-CCCHHHHHHHHHHHhC--CceEEEEEeCCCCCCccChhhhHHhhhCCC----CCcEEEEEccchhhhh
Q 002132 261 IAEALGIPSSN-LGEFQSLLKLISESIT--GKRFLLVLDDVWDGDCIKWEPFYLCLKNGL----HGSKILVTTRKKSVAS 333 (961)
Q Consensus 261 i~~~l~~~~~~-~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtR~~~~~~ 333 (961)
++..++...+. ......+...+...+. +++.+|||||++..+......+...+.... .+..||++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99998764332 2345555556655553 668999999998775444555555443211 3667888887664332
Q ss_pred hhcc-----CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhc---------CCCchhHHHHHHhhc
Q 002132 334 MMGS-----TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKF---------KGLPLAAKTIGSLMR 399 (961)
Q Consensus 334 ~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c---------~G~PLai~~~~~~l~ 399 (961)
.+.. .....+.+.+++.++..+++...+....... .-..+..+.|++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 2211 1113699999999999999988753211000 11235677888888 788765544433221
Q ss_pred ------cCC--CHHHHHHHhcCcccchhhhhhhHHHHHHHhhcCCChhhHHHHhhhccCC---CCCccChHHHHHHHHH-
Q 002132 400 ------SKQ--IEEEWERISNSDLWRVEEMEKGVLSSLLLSYNDLPSKVKICFSYCAVFP---KNYNIKKDELLTLWMA- 467 (961)
Q Consensus 400 ------~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp---~~~~i~~~~Li~~w~a- 467 (961)
... +.+.......... ...+.-.+..|+.+.+.++..++.+. .+..+....+...+-.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 111 2222221111100 01122335667888887777776553 2224556666655532
Q ss_pred ---cCCcccCCCCcHHHHHHHHHHHHHhCCCcccccc----cCCCceeeEe----echhHHHHHHhhc
Q 002132 468 ---QGYLSAKQNKEMETIGEEYFSILASRSFFQEFEK----SYDNRIIECK----MHDIVHDFARFVS 524 (961)
Q Consensus 468 ---~g~i~~~~~~~~~~~~~~~~~~L~~~~li~~~~~----~~~~~~~~~~----mHdlv~~~a~~~~ 524 (961)
.|... .+ .....+++++|...++|..... +..|+...++ .|+++..+...+.
T Consensus 322 ~~~~~~~~----~~-~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~ 384 (389)
T 1fnn_A 322 CEEYGERP----RV-HSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLI 384 (389)
T ss_dssp HHHTTCCC----CC-HHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHcCCCC----CC-HHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHH
Confidence 22111 11 2345678999999999987544 2223332232 4566665555443
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=1.2e-13 Score=166.19 Aligned_cols=167 Identities=19% Similarity=0.231 Sum_probs=106.8
Q ss_pred cceeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcccc
Q 002132 547 EKVRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIE 626 (961)
Q Consensus 547 ~~~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~ 626 (961)
..++++.+..+.............+|+.+.+......++. ...++..|..++.|++|+|++|. +..+|..++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~--~~~~~~~~~~l~~L~~L~Ls~n~------l~~l~~~~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENR--MVMPKDSKYDDQLWHALDLSNLQ------IFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSC------CSCCCGGGG
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccc--eecChhhhccCCCCcEEECCCCC------CCCCChhhc
Confidence 4577888876665543444444455555554443322211 12456678899999999999998 889999999
Q ss_pred ccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 627 KLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 627 ~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
++.+|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|++|++|++|++++|. +..+|..|+.|++|++|+
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEe
Confidence 9999999999999999999999999999999999999 66999999999999999999995 578999999999999998
Q ss_pred ceEeCCCCCcCCCcccccccc
Q 002132 707 EFHVIGGGGVDGRKACWFESL 727 (961)
Q Consensus 707 ~~~~~~~~~~~~~~~~~l~~L 727 (961)
.++|.+.+..+..+..+
T Consensus 323 ----L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 323 ----VEGNPLEKQFLKILTEK 339 (727)
T ss_dssp ----CTTSCCCSHHHHHHHHH
T ss_pred ----CCCCccCCCChHHHhhc
Confidence 77887766655555443
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=5.6e-13 Score=154.06 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=70.2
Q ss_pred CceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCc
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMK 679 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 679 (961)
.+|++|+|++|. +..+|..+. ++|++|+|++|.|+.+| ..+++|++|++++|. +..+|. +.+ +|+
T Consensus 59 ~~L~~L~Ls~n~------L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~ 123 (571)
T 3cvr_A 59 NQFSELQLNRLN------LSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLK 123 (571)
T ss_dssp TTCSEEECCSSC------CSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCC
T ss_pred CCccEEEeCCCC------CCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCC
Confidence 389999999987 777887764 78999999999999888 557899999999987 666887 655 899
Q ss_pred eeecCCccccccccccCCCCCCCCcCC
Q 002132 680 HLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 680 ~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
+|++++|. +..+|. .+++|+.|+
T Consensus 124 ~L~Ls~N~-l~~lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 124 HLDVDNNQ-LTMLPE---LPALLEYIN 146 (571)
T ss_dssp EEECCSSC-CSCCCC---CCTTCCEEE
T ss_pred EEECCCCc-CCCCCC---cCccccEEe
Confidence 99999886 444665 466676666
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=4.1e-13 Score=143.13 Aligned_cols=169 Identities=21% Similarity=0.229 Sum_probs=100.8
Q ss_pred hcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhccc
Q 002132 597 RESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLI 676 (961)
Q Consensus 597 ~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 676 (961)
..++.|+.|++++|. +..+| .+..+++|++|+|++|.++.+|. +.++++|++|++++|. +..+|. +..++
T Consensus 43 ~~l~~L~~L~l~~~~------i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~ 112 (291)
T 1h6t_A 43 NELNSIDQIIANNSD------IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLK 112 (291)
T ss_dssp HHHHTCCEEECTTSC------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCT
T ss_pred hhcCcccEEEccCCC------cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCC
Confidence 345667777777776 55554 36667777777777777776666 7777777777777776 555554 66777
Q ss_pred CCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccC
Q 002132 677 NMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELD 756 (961)
Q Consensus 677 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~ 756 (961)
+|++|++++|. +..+ ..+..+++|+.|+ +.++
T Consensus 113 ~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~----------------------------l~~n------------------ 144 (291)
T 1h6t_A 113 KLKSLSLEHNG-ISDI-NGLVHLPQLESLY----------------------------LGNN------------------ 144 (291)
T ss_dssp TCCEEECTTSC-CCCC-GGGGGCTTCCEEE----------------------------CCSS------------------
T ss_pred CCCEEECCCCc-CCCC-hhhcCCCCCCEEE----------------------------ccCC------------------
Confidence 77777777664 2222 1233333333333 2222
Q ss_pred CCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC
Q 002132 757 KKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP 836 (961)
Q Consensus 757 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~ 836 (961)
.... ...+..+++|+.|++++|.+.. ++. +..+++|+.|+|++|.+. .++.
T Consensus 145 -------------~l~~-------------~~~l~~l~~L~~L~L~~N~l~~-~~~-l~~l~~L~~L~L~~N~i~-~l~~ 195 (291)
T 1h6t_A 145 -------------KITD-------------ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLRA 195 (291)
T ss_dssp -------------CCCC-------------CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCGG
T ss_pred -------------cCCc-------------chhhccCCCCCEEEccCCcccc-chh-hcCCCccCEEECCCCcCC-CChh
Confidence 1110 0123344566666666666665 443 666777777777777553 3455
Q ss_pred CCCccccceeeccccc
Q 002132 837 LGKLQSLEKLSLTIMR 852 (961)
Q Consensus 837 l~~l~~L~~L~L~~~~ 852 (961)
+..+++|+.|++++|+
T Consensus 196 l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GTTCTTCSEEEEEEEE
T ss_pred hccCCCCCEEECcCCc
Confidence 6777777777777765
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=6.4e-13 Score=141.61 Aligned_cols=121 Identities=20% Similarity=0.286 Sum_probs=97.5
Q ss_pred cccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccc
Q 002132 566 ICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLP 645 (961)
Q Consensus 566 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp 645 (961)
...+++|+.|.+.++.+.. .+. +..+++|++|++++|. +..++. +.++++|++|++++|.++.+|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-------~~~-~~~l~~L~~L~L~~n~------l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-------VQG-IQYLPNVTKLFLNGNK------LTDIKP-LANLKNLGWLFLDENKVKDLS 106 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-------CTT-GGGCTTCCEEECCSSC------CCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred hhhcCcccEEEccCCCccc-------Chh-HhcCCCCCEEEccCCc------cCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence 4568899999999887542 122 7889999999999998 777777 999999999999999999987
Q ss_pred hhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 646 ETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 646 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
. +.++++|++|++++|. +..+| .+..+++|++|++++|. +..+ ..++.+++|++|+
T Consensus 107 ~-l~~l~~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLS 162 (291)
T ss_dssp G-GTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEE
T ss_pred h-hccCCCCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEE
Confidence 6 9999999999999998 66665 58999999999999985 3333 3344444444444
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=5.3e-13 Score=156.18 Aligned_cols=103 Identities=18% Similarity=0.262 Sum_probs=62.1
Q ss_pred ccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccch
Q 002132 567 CRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPE 646 (961)
Q Consensus 567 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~ 646 (961)
..+++|+.|.+.++.+.. ++ .+..+++|+.|+|++|. +..+|. ++.|++|++|+|++|.++.+|
T Consensus 40 ~~L~~L~~L~l~~n~i~~-------l~-~l~~l~~L~~L~Ls~N~------l~~~~~-l~~l~~L~~L~Ls~N~l~~l~- 103 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-------VQ-GIQYLPNVTKLFLNGNK------LTDIKP-LTNLKNLGWLFLDENKIKDLS- 103 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-------CT-TGGGCTTCCEEECTTSC------CCCCGG-GGGCTTCCEEECCSSCCCCCT-
T ss_pred hcCCCCCEEECcCCCCCC-------Ch-HHccCCCCCEEEeeCCC------CCCChh-hccCCCCCEEECcCCCCCCCh-
Confidence 445666666666655321 11 15566666666666665 555554 666666666666666666655
Q ss_pred hhhccCCCcEEeecCcccccccchhhhcccCCceeecCCcc
Q 002132 647 TLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTD 687 (961)
Q Consensus 647 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 687 (961)
.+.++++|++|+|++|. +..+| .+..|++|++|++++|.
T Consensus 104 ~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK 142 (605)
T ss_dssp TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSC
T ss_pred hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCc
Confidence 46666666666666666 44443 36666666666666664
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=6.2e-13 Score=132.87 Aligned_cols=78 Identities=23% Similarity=0.247 Sum_probs=42.3
Q ss_pred cccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcC
Q 002132 626 EKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTL 705 (961)
Q Consensus 626 ~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 705 (961)
..+++|++|++++|.++.+| .+..+++|++|++++|. +..++ .+..+++|++|++++|......|..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45556666666666666655 45666666666666663 43333 45566666666666654333334444444444444
Q ss_pred C
Q 002132 706 D 706 (961)
Q Consensus 706 ~ 706 (961)
+
T Consensus 118 ~ 118 (197)
T 4ezg_A 118 D 118 (197)
T ss_dssp E
T ss_pred E
Confidence 3
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=5.7e-13 Score=139.60 Aligned_cols=167 Identities=19% Similarity=0.167 Sum_probs=116.2
Q ss_pred cCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 598 ESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 598 ~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
.+..+..++++++. +..++ .+..+.+|++|++++|.++.+| .+..+++|++|++++|. +..+|. +.++++
T Consensus 17 ~l~~l~~l~l~~~~------i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~ 86 (263)
T 1xeu_A 17 GLANAVKQNLGKQS------VTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTK 86 (263)
T ss_dssp HHHHHHHHHHTCSC------TTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSS
T ss_pred HHHHHHHHHhcCCC------ccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCC
Confidence 45567777888877 66666 5778888888888888888887 68888888888888887 666776 888888
Q ss_pred CceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCC
Q 002132 678 MKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDK 757 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~ 757 (961)
|++|++++|. +..+|... . ++| +.|++.++.
T Consensus 87 L~~L~L~~N~-l~~l~~~~-~-~~L----------------------------~~L~L~~N~------------------ 117 (263)
T 1xeu_A 87 LEELSVNRNR-LKNLNGIP-S-ACL----------------------------SRLFLDNNE------------------ 117 (263)
T ss_dssp CCEEECCSSC-CSCCTTCC-C-SSC----------------------------CEEECCSSC------------------
T ss_pred CCEEECCCCc-cCCcCccc-c-Ccc----------------------------cEEEccCCc------------------
Confidence 8888888875 33333211 1 222 222222221
Q ss_pred CCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCC
Q 002132 758 KKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPL 837 (961)
Q Consensus 758 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l 837 (961)
... ...+..+++|+.|++++|.+.. +| .+..+++|+.|+|++|.+.+. +.+
T Consensus 118 -------------l~~-------------~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 118 -------------LRD-------------TDSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp -------------CSB-------------SGGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred -------------cCC-------------ChhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHh
Confidence 110 0124456677777777777766 54 577788888888888877554 668
Q ss_pred CCccccceeeccccc
Q 002132 838 GKLQSLEKLSLTIMR 852 (961)
Q Consensus 838 ~~l~~L~~L~L~~~~ 852 (961)
+.+++|+.|++++|.
T Consensus 169 ~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCCCCEEEEEEEE
T ss_pred ccCCCCCEEeCCCCc
Confidence 888888888888876
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=1.6e-12 Score=131.19 Aligned_cols=100 Identities=26% Similarity=0.411 Sum_probs=61.5
Q ss_pred CCceeEEecCCCCCCCCccccccCcc-ccccCccceEEecCCcccccchh-hhccCCCcEEeecCcccccccchh-hhcc
Q 002132 599 STSLRALDFWGSYDVSPFWTLKIPRN-IEKLVHLRYLNLSCQNIRKLPET-LCELYNLEKLYITRCLYLEELPEG-IGKL 675 (961)
Q Consensus 599 ~~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L 675 (961)
.+.|++|++++|. +..+|.. +..+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|.. +..+
T Consensus 27 ~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETNS------LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKL 99 (208)
T ss_dssp CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCCcEEEcCCCc------cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCc
Confidence 4567777777776 5555543 56677777777777777766554 4667777777777776 4445443 5667
Q ss_pred cCCceeecCCcccccccccc-CCCCCCCCcCC
Q 002132 676 INMKHLLNYRTDSLRYMPVG-IGRLTGLRTLD 706 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~ 706 (961)
++|++|++++|.. ..+|.. +..+++|++|+
T Consensus 100 ~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 100 TQLKELALNTNQL-QSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp TTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEEcCCCcC-cccCHhHhccCCcCCEEE
Confidence 7777777777643 333322 44445554444
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=1.7e-12 Score=129.76 Aligned_cols=124 Identities=13% Similarity=0.146 Sum_probs=77.6
Q ss_pred ccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccc-cc
Q 002132 567 CRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRK-LP 645 (961)
Q Consensus 567 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-Lp 645 (961)
..+++|+.|.+.++.+.. ++ .+..+++|++|++++|. +..++ .+..+++|++|++++|.++. .|
T Consensus 41 ~~l~~L~~L~l~~n~i~~------l~--~l~~l~~L~~L~l~~n~------~~~~~-~l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD------LT--GIEYAHNIKDLTINNIH------ATNYN-PISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHHHTCCEEEEESSCCSC------CT--TGGGCTTCSEEEEESCC------CSCCG-GGTTCTTCCEEEEECTTCBGGGS
T ss_pred hhcCCccEEeccCCCccC------hH--HHhcCCCCCEEEccCCC------CCcch-hhhcCCCCCEEEeECCccCcccC
Confidence 456667777777665431 11 25667777777777775 44433 56667777777777777764 56
Q ss_pred hhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 646 ETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 646 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
..++++++|++|++++|......|..+..+++|++|++++|..+..+| .+..+++|+.|+
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN 165 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE
Confidence 667777777777777776444556667777777777777765344444 345555555554
No 118
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=3.6e-11 Score=134.28 Aligned_cols=298 Identities=13% Similarity=0.073 Sum_probs=175.2
Q ss_pred CCCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC---CeEEEEEeCCcccHHHH
Q 002132 181 DEEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF---DKLLWVCVSDPFEQFRV 257 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~~~~~~~ 257 (961)
.+..|+||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ..++|+++....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 346799999999999998875321 124468899999999999999999985 33332 35778887776777888
Q ss_pred HHHHHHHcCCCCCC-CCCHHHHHHHHHHHhC--CceEEEEEeCCCCCC----ccChhhhHHhhhC-CCCCcEEEEEccch
Q 002132 258 AKAIAEALGIPSSN-LGEFQSLLKLISESIT--GKRFLLVLDDVWDGD----CIKWEPFYLCLKN-GLHGSKILVTTRKK 329 (961)
Q Consensus 258 ~~~i~~~l~~~~~~-~~~~~~l~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtR~~ 329 (961)
+..++.+++..... ......+...+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 88888877654322 2234555555655554 458999999997632 2223333333322 23455678888766
Q ss_pred hhhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHHcCCC-CCCChhhHHHHHHHHHhhcC---CCchhHHHHHHhhc-
Q 002132 330 SVASMMG-----STDTDIITVMELTEEECWSLFKRLAFFGP-SINDCEKLEQIGRRIAGKFK---GLPLAAKTIGSLMR- 399 (961)
Q Consensus 330 ~~~~~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c~---G~PLai~~~~~~l~- 399 (961)
.....+. ......+.+++++.++..+++.+.+.... ..... .++.+.|++.++ |.|..+..+.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4322211 11114799999999999999988642111 11111 345566777776 99984443322211
Q ss_pred -----cC--CCHHHHHHHhcCcccchhhhhhhHHHHHHHhhcCCChhhHHHHhhhccCCC-C-CccChHHHHHHH--HH-
Q 002132 400 -----SK--QIEEEWERISNSDLWRVEEMEKGVLSSLLLSYNDLPSKVKICFSYCAVFPK-N-YNIKKDELLTLW--MA- 467 (961)
Q Consensus 400 -----~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~-~-~~i~~~~Li~~w--~a- 467 (961)
.. -+.+.+....... ....+.-++..+|.+.+..+..++...+ + ..+....+.+.. ++
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 11 1333333332211 1234556678888887777766663211 1 123343332222 11
Q ss_pred -cCCcccCCCCcHHHHHHHHHHHHHhCCCccccc
Q 002132 468 -QGYLSAKQNKEMETIGEEYFSILASRSFFQEFE 500 (961)
Q Consensus 468 -~g~i~~~~~~~~~~~~~~~~~~L~~~~li~~~~ 500 (961)
.| +.+ ........+++.|...++|....
T Consensus 321 ~~g-~~~----~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 321 KLG-VEA----VTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHT-CCC----CCHHHHHHHHHHHHHHTSEEEEE
T ss_pred hcC-CCC----CCHHHHHHHHHHHHhCCCEEEEe
Confidence 12 111 11234567899999999998643
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=1.6e-14 Score=168.00 Aligned_cols=120 Identities=20% Similarity=0.220 Sum_probs=82.2
Q ss_pred CCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCCcccCcCccc
Q 002132 795 DLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKL 873 (961)
Q Consensus 795 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L 873 (961)
.|+.|++++|.+.. +|. +..+++|+.|+|++|.+. .+|. ++++++|+.|+|++|. ++.++ . ++.+++|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~------l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVD-G------VANLPRL 510 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCG-G------GTTCSSC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCCc-c------cCCCCCC
Confidence 47788888888777 776 778888888888888776 4444 7888888888888876 44443 1 2567788
Q ss_pred ceeeccccccccccccccccccccccccccccceecccccccCcCCCCCCC----CCCCccEEE
Q 002132 874 KSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIH----QTTTLKELR 933 (961)
Q Consensus 874 ~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~----~l~~L~~L~ 933 (961)
+.|+|+++ .++.+.. +..+..+++|+.|++++|+ ++.+|..+. .+|+|+.|+
T Consensus 511 ~~L~Ls~N-~l~~~~~------p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 511 QELLLCNN-RLQQSAA------IQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSS-CCCSSST------TGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred cEEECCCC-CCCCCCC------cHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 88888776 4554420 1123478888888888876 666655432 267777774
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.31 E-value=2.3e-12 Score=148.92 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=107.4
Q ss_pred CccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhc
Q 002132 571 RIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCE 650 (961)
Q Consensus 571 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~ 650 (961)
+++.|.+.++.+.. ++..+ +++|++|+|++|. +..+| ..+++|++|+|++|.|+.+|. +.+
T Consensus 60 ~L~~L~Ls~n~L~~------lp~~l---~~~L~~L~Ls~N~------l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS------LPDNL---PPQITVLEITQNA------LISLP---ELPASLEYLDACDNRLSTLPE-LPA 120 (571)
T ss_dssp TCSEEECCSSCCSC------CCSCC---CTTCSEEECCSSC------CSCCC---CCCTTCCEEECCSSCCSCCCC-CCT
T ss_pred CccEEEeCCCCCCc------cCHhH---cCCCCEEECcCCC------Ccccc---cccCCCCEEEccCCCCCCcch-hhc
Confidence 66677766665321 12221 3567777777776 66666 346777777777777777777 554
Q ss_pred cCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCC
Q 002132 651 LYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNL 730 (961)
Q Consensus 651 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L 730 (961)
+|++|++++|. +..+|. .+++|++|++++|. +..+|. .+++|++|+ .+.|.+... +. +. ++
T Consensus 121 --~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~----Ls~N~L~~l-p~-l~--~~- 181 (571)
T 3cvr_A 121 --SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLS----VRNNQLTFL-PE-LP--ES- 181 (571)
T ss_dssp --TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEE----CCSSCCSCC-CC-CC--TT-
T ss_pred --CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEE----CCCCCCCCc-ch-hh--CC-
Confidence 77777777776 555766 56777777777775 334554 344555554 333322221 11 11 23
Q ss_pred CcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeecCCCCC
Q 002132 731 KHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYRGNTVF 810 (961)
Q Consensus 731 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~l 810 (961)
|+.|+++.|.+..... ... .-...++.|+.|+|++|.+.. +
T Consensus 182 ------------------------------L~~L~Ls~N~L~~lp~-----~~~---~L~~~~~~L~~L~Ls~N~l~~-l 222 (571)
T 3cvr_A 182 ------------------------------LEALDVSTNLLESLPA-----VPV---RNHHSEETEIFFRCRENRITH-I 222 (571)
T ss_dssp ------------------------------CCEEECCSSCCSSCCC-----CC-----------CCEEEECCSSCCCC-C
T ss_pred ------------------------------CCEEECcCCCCCchhh-----HHH---hhhcccccceEEecCCCccee-c
Confidence 3333333332221000 000 001222345888888888877 8
Q ss_pred CCccccccCccEEEEeCCCCCCcCC
Q 002132 811 PNWLMSLTNLRSLVLYGCENCEQLP 835 (961)
Q Consensus 811 p~~~~~l~~L~~L~L~~~~~~~~l~ 835 (961)
|.++..+++|+.|+|++|.+.+..|
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 8888888888888888887765444
No 121
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.29 E-value=3.7e-11 Score=124.79 Aligned_cols=199 Identities=14% Similarity=0.081 Sum_probs=121.7
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++||+.+++.+..++.... ..+.+.|+|++|+||||||+.+++... ..+.... .......+ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~--~~~~~~~-~~~~~~~~----~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLN--CETGITA-TPCGVCDN----CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHH--CTTCSCS-SCCSCSHH----HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhc--CCCCCCC-CCCcccHH----HHHHh
Confidence 469999999999999987533 234789999999999999999988532 2111000 00000000 00000
Q ss_pred HHcC-----CCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhh-
Q 002132 263 EALG-----IPSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVA- 332 (961)
Q Consensus 263 ~~l~-----~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~- 332 (961)
.... .........+.+...+... ..+++.+||+||++..+...+..+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 0000 0000001112222222211 23568999999998876667777887777666678888888765421
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhh
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLM 398 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 398 (961)
..... ....+++.+++.++..+++.+.+..... .. ..+..+.|++.|+|.|..+..+...+
T Consensus 171 ~~l~~-r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILS-RCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHT-TSEEEECCCCCHHHHHHHHHHHHHHTTC-CB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHH-HhhhccCCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11111 1267999999999999999987743221 11 13457789999999999888776543
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=8.3e-14 Score=162.04 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=49.1
Q ss_pred CCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcC-C-CCCCccccceeecccccCceEeCCcccCCcccC
Q 002132 791 QPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQL-P-PLGKLQSLEKLSLTIMRSVKRVGDECLGIEIID 868 (961)
Q Consensus 791 ~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 868 (961)
..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+.... | .++.+++|+.|+|++|. +..++..... ...
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~--l~~ 557 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQER--LAE 557 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTH--HHH
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHH--HHH
Confidence 345566666666666666 66 5667777777777777665542 3 36777777777777776 4333322110 013
Q ss_pred cCcccceee
Q 002132 869 AFPKLKSLT 877 (961)
Q Consensus 869 ~f~~L~~L~ 877 (961)
.+|+|+.|+
T Consensus 558 ~lp~L~~L~ 566 (567)
T 1dce_A 558 MLPSVSSIL 566 (567)
T ss_dssp HCTTCSEEE
T ss_pred HCcccCccC
Confidence 467777764
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=8.5e-12 Score=126.83 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=87.6
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCcccccchh-
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKLPET- 647 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~Lp~~- 647 (961)
++++.|.+.++.+. .+++..|..+++|++|+|++|. +..+ |..+..+++|++|+|++|.|+.+|..
T Consensus 32 ~~l~~L~l~~n~i~------~i~~~~~~~l~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 32 ETITEIRLEQNTIK------VIPPGAFSPYKKLRRIDLSNNQ------ISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp TTCCEEECCSSCCC------EECTTSSTTCTTCCEEECCSSC------CCEECTTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred cCCCEEECCCCcCC------CcCHhHhhCCCCCCEEECCCCc------CCCcCHHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 56778887777643 2334456777888888888887 6555 66778888888888888888877765
Q ss_pred hhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 648 LCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
+.++++|++|+|++|......|..+..+++|++|++++|......+..+..+++|+.|+
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 47788888888888874444456677888888888888764333333466677777666
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=9.3e-12 Score=120.77 Aligned_cols=129 Identities=22% Similarity=0.222 Sum_probs=68.0
Q ss_pred CCceeEEecCCCCCCCCcccc--ccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhccc
Q 002132 599 STSLRALDFWGSYDVSPFWTL--KIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKLI 676 (961)
Q Consensus 599 ~~~Lr~L~L~~~~~~~~~~~~--~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 676 (961)
.+.|++|++++|. +. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+..++
T Consensus 23 ~~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 3556666666665 44 5555555666666666666665555 4555666666666666653333555555566
Q ss_pred CCceeecCCcccccccc--ccCCCCCCCCcCCceEeCCCCCcCCCcc---cccccccCCCcCCccccc
Q 002132 677 NMKHLLNYRTDSLRYMP--VGIGRLTGLRTLDEFHVIGGGGVDGRKA---CWFESLKNLKHLQVCGIR 739 (961)
Q Consensus 677 ~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~~---~~l~~L~~L~~L~~~~~~ 739 (961)
+|++|++++|. +..+| ..+..+++|++|+ ...+.+....+ ..+..+++|+.|++.++.
T Consensus 96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~----l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLD----LFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEE----CCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCCc-cCcchhHHHHhcCCCCCEEE----eeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 66666666653 33333 3455555555555 33443333222 234445555555554443
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=1.4e-11 Score=126.11 Aligned_cols=123 Identities=23% Similarity=0.388 Sum_probs=94.3
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcc-ccccCccceEEecCCcccccchh-
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRN-IEKLVHLRYLNLSCQNIRKLPET- 647 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~Lp~~- 647 (961)
++|+.|.+.++.+.. +.+..|..+++|++|+|++|. +..+|.. +..+++|++|+|++|.|+.+|..
T Consensus 40 ~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~N~------l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 40 TNAQILYLHDNQITK------LEPGVFDSLINLKELYLGSNQ------LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp TTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCEEEcCCCccCc------cCHHHhhCccCCcEEECCCCC------CCCcChhhcccCCCcCEEECCCCcCCccChhH
Confidence 778888888876542 234457788888888888888 7777644 57888888888888888888665
Q ss_pred hhccCCCcEEeecCcccccccchhhhcccCCceeecCCcccccccc-ccCCCCCCCCcCC
Q 002132 648 LCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMP-VGIGRLTGLRTLD 706 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~ 706 (961)
+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|+.|.
T Consensus 108 ~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp TTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred hCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEE
Confidence 5788888888888887 66888888888888888888885 44455 3466777777766
No 126
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=1.6e-11 Score=123.89 Aligned_cols=152 Identities=26% Similarity=0.370 Sum_probs=108.0
Q ss_pred CCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCcc-ccccCccceEEecCCcccccchh
Q 002132 569 VKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRN-IEKLVHLRYLNLSCQNIRKLPET 647 (961)
Q Consensus 569 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~-i~~L~~Lr~L~L~~~~i~~Lp~~ 647 (961)
.++|+.|.+.++.+. .+++..|..+++|++|++++|. +..+|.. +..+++|++|+|++|.++.+|..
T Consensus 27 ~~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 27 PAQTTYLDLETNSLK------SLPNGVFDELTSLTQLYLGGNK------LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp CTTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCcEEEcCCCccC------cCChhhhcccccCcEEECCCCc------cCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 457888888887643 2344457788888999998887 6666654 57888899999988888887765
Q ss_pred -hhccCCCcEEeecCcccccccchh-hhcccCCceeecCCcccccccccc-CCCCCCCCcCCceEeCCCCCcCCCccccc
Q 002132 648 -LCELYNLEKLYITRCLYLEELPEG-IGKLINMKHLLNYRTDSLRYMPVG-IGRLTGLRTLDEFHVIGGGGVDGRKACWF 724 (961)
Q Consensus 648 -i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l 724 (961)
+.++++|++|++++|. +..+|.. +.++++|++|++++|.. ..+|.. +..+++|+.|+ ...+.+ .
T Consensus 95 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~----l~~N~~-------~ 161 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIW----LHDNPW-------D 161 (208)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEE----CCSCCB-------C
T ss_pred HhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEE----ecCCCe-------e
Confidence 5788889999998887 5555554 67888899998888864 445543 67788888877 444432 2
Q ss_pred ccccCCCcCCccccccCCCCC
Q 002132 725 ESLKNLKHLQVCGIRRLGDVS 745 (961)
Q Consensus 725 ~~L~~L~~L~~~~~~~~~~~~ 745 (961)
..+++|+.|+...+...+.++
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBB
T ss_pred cCCCCHHHHHHHHHhCCceee
Confidence 345566666666666555544
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=2.8e-11 Score=122.92 Aligned_cols=100 Identities=21% Similarity=0.270 Sum_probs=63.0
Q ss_pred CceeEEecCCCCCCCCccccccCc-cccccCccceEEecCCccccc-chhhhccCCCcEEeecCcccccccchh-hhccc
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPR-NIEKLVHLRYLNLSCQNIRKL-PETLCELYNLEKLYITRCLYLEELPEG-IGKLI 676 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~ 676 (961)
+.|+.|+|++|. +..+|. .+..+++|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +..++
T Consensus 32 ~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNT------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSC------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred cCCCEEECCCCc------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCC
Confidence 467777777776 555553 566677777777777777655 5566777777777777776 5555554 45677
Q ss_pred CCceeecCCccccccccccCCCCCCCCcCC
Q 002132 677 NMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 677 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
+|++|++++|......|..+..+++|+.|+
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 777777777654333344455555555555
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=9.7e-12 Score=117.93 Aligned_cols=123 Identities=28% Similarity=0.316 Sum_probs=62.9
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccc-cchhh
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRK-LPETL 648 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-Lp~~i 648 (961)
++|+.|.+.++.... +. .+..+..+++|++|++++|. +..+ ..++.+++|++|++++|.++. +|..+
T Consensus 17 ~~l~~L~l~~n~l~~----~~-~~~~~~~l~~L~~L~l~~n~------l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNE----GK-LEGLTDEFEELEFLSTINVG------LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp GGCSEEECTTCBCBT----TB-CCSCCTTCTTCCEEECTTSC------CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred ccCeEEEccCCcCCh----hH-HHHHHhhcCCCcEEECcCCC------CCCc-hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 455566665554321 01 11234555566666666555 4444 445555666666666666554 55555
Q ss_pred hccCCCcEEeecCcccccccc--hhhhcccCCceeecCCccccccccc----cCCCCCCCCcCC
Q 002132 649 CELYNLEKLYITRCLYLEELP--EGIGKLINMKHLLNYRTDSLRYMPV----GIGRLTGLRTLD 706 (961)
Q Consensus 649 ~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~ 706 (961)
.++++|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .++.+++|+.|+
T Consensus 85 ~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 85 EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 556666666666655 33332 455556666666665553 233332 344444444443
No 129
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.21 E-value=2.1e-10 Score=117.14 Aligned_cols=188 Identities=12% Similarity=-0.019 Sum_probs=120.0
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC-CeEEEEEeCCcccHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF-DKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~ 260 (961)
-.+++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++... ...+ ...+.+..+.......+...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHH
Confidence 3468999999999999997532 23489999999999999999988532 1122 22444444443333222221
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhh-hhhhccCC
Q 002132 261 IAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSV-ASMMGSTD 339 (961)
Q Consensus 261 i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~-~~~~~~~~ 339 (961)
+....... ....+++.+||+||++.........+...+.....+.++|+||+.... ...+...
T Consensus 89 ~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r- 152 (226)
T 2chg_A 89 IKEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR- 152 (226)
T ss_dssp HHHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT-
T ss_pred HHHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh-
Confidence 11111100 011357899999999887655566777777666667888888876532 1111111
Q ss_pred cceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHH
Q 002132 340 TDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGS 396 (961)
Q Consensus 340 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~ 396 (961)
...+.+.+++.++..+++.+.+...+.. . ..+..+.|++.++|.|..+..+..
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK-I---TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCC-B---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2479999999999999998876422211 1 134567888999999986554433
No 130
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=4e-11 Score=125.52 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=63.9
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcc
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKL 675 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 675 (961)
+..++.|++|++++|. +..+| .++.+++|++|+|++|.++.+|. +.++++|++|++++|. +..+|... .
T Consensus 37 ~~~l~~L~~L~l~~n~------i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~-~- 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN------IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIP-S- 105 (263)
T ss_dssp HHHHTTCSEEECTTSC------CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCC-C-
T ss_pred hhhcCcCcEEECcCCC------cccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccc-c-
Confidence 4556777777777776 66665 56677777777777777777766 7777777777777776 55565422 2
Q ss_pred cCCceeecCCccccccccccCCCCCCCCcCC
Q 002132 676 INMKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
++|++|++++|. +..++ .++.+++|+.|+
T Consensus 106 ~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 106 ACLSRLFLDNNE-LRDTD-SLIHLKNLEILS 134 (263)
T ss_dssp SSCCEEECCSSC-CSBSG-GGTTCTTCCEEE
T ss_pred CcccEEEccCCc-cCCCh-hhcCcccccEEE
Confidence 677777777774 33333 355666666665
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=4e-11 Score=121.82 Aligned_cols=143 Identities=16% Similarity=0.131 Sum_probs=86.5
Q ss_pred cEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC--ccccccCccceEEecCCcccccch-hhh
Q 002132 573 RSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP--RNIEKLVHLRYLNLSCQNIRKLPE-TLC 649 (961)
Q Consensus 573 r~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp--~~i~~L~~Lr~L~L~~~~i~~Lp~-~i~ 649 (961)
+++.+.++... .++.. -...+++|+|++|. +..++ ..+..+++|++|+|++|.|+.+|. .+.
T Consensus 14 ~~l~~s~n~l~------~iP~~---~~~~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 78 (220)
T 2v70_A 14 TTVDCSNQKLN------KIPEH---IPQYTAELRLNNNE------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78 (220)
T ss_dssp TEEECCSSCCS------SCCSC---CCTTCSEEECCSSC------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEeEeCCCCcc------cCccC---CCCCCCEEEcCCCc------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhC
Confidence 56777666532 12221 13456778888777 66663 236777888888888887777655 577
Q ss_pred ccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccC
Q 002132 650 ELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKN 729 (961)
Q Consensus 650 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~ 729 (961)
++++|++|+|++|......|..+..+++|++|++++|......|..+..+++|++|+ ...+.+....+..+..+++
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS----LYDNQITTVAPGAFDTLHS 154 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE----CTTSCCCCBCTTTTTTCTT
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE----CCCCcCCEECHHHhcCCCC
Confidence 788888888888773333344477778888888877764444455566666666666 4444443333333333333
Q ss_pred CCcCC
Q 002132 730 LKHLQ 734 (961)
Q Consensus 730 L~~L~ 734 (961)
|+.|+
T Consensus 155 L~~L~ 159 (220)
T 2v70_A 155 LSTLN 159 (220)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 33333
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=3.9e-11 Score=121.88 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=111.0
Q ss_pred EEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCc-cccccC
Q 002132 551 HLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPR-NIEKLV 629 (961)
Q Consensus 551 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~ 629 (961)
.+.+..+....++..+ ...++.|.+.++.+.. ..+..+|..+++|++|+|++|. +..++. .+..++
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~-----~~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~ 81 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTV-----LEATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGAS 81 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCE-----ECCCCCGGGCTTCCEEECCSSC------CCEECTTTTTTCT
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCc-----cCchhhhccCCCCCEEECCCCc------CCEECHHHhCCCC
Confidence 4555555544444333 3457899998887542 1123447889999999999998 777764 788999
Q ss_pred ccceEEecCCcccccchh-hhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCcCCce
Q 002132 630 HLRYLNLSCQNIRKLPET-LCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEF 708 (961)
Q Consensus 630 ~Lr~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 708 (961)
+|++|+|++|.++.+|.. +.++++|++|+|++|......|..+..+++|++|++++|......|..+..+++|+.|+
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-- 159 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN-- 159 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE--
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE--
Confidence 999999999999987664 88999999999999984444577888999999999999875555577788888888887
Q ss_pred EeCCCCC
Q 002132 709 HVIGGGG 715 (961)
Q Consensus 709 ~~~~~~~ 715 (961)
..+|.
T Consensus 160 --L~~N~ 164 (220)
T 2v70_A 160 --LLANP 164 (220)
T ss_dssp --CCSCC
T ss_pred --ecCcC
Confidence 55553
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=1.3e-11 Score=136.11 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=38.6
Q ss_pred ceeEEecCCCCCCCCccccccCcc-cc-ccCccceEEecCCcccccch-hhhccCCCcEEeecCcccccccch-hhhccc
Q 002132 601 SLRALDFWGSYDVSPFWTLKIPRN-IE-KLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLEELPE-GIGKLI 676 (961)
Q Consensus 601 ~Lr~L~L~~~~~~~~~~~~~lp~~-i~-~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~ 676 (961)
.+++|+|++|. +..++.. +. .+.+|++|+|++|.|+.+|. .+.++++|++|+|++|. +..+|. .+..++
T Consensus 40 ~l~~L~Ls~N~------l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 112 (361)
T 2xot_A 40 YTALLDLSHNN------LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQ 112 (361)
T ss_dssp TCSEEECCSSC------CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred CCCEEECCCCC------CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCc
Confidence 34555555554 4444332 22 45555555555555554432 34555555555555554 333322 344555
Q ss_pred CCceeecCCcc
Q 002132 677 NMKHLLNYRTD 687 (961)
Q Consensus 677 ~L~~L~l~~~~ 687 (961)
+|++|++++|.
T Consensus 113 ~L~~L~L~~N~ 123 (361)
T 2xot_A 113 ALEVLLLYNNH 123 (361)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 55555555554
No 134
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=3.7e-11 Score=122.95 Aligned_cols=130 Identities=25% Similarity=0.363 Sum_probs=103.8
Q ss_pred CCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCcccccchh-hhccCCCcEEeecCcccccccchh-hhcc
Q 002132 599 STSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKLPET-LCELYNLEKLYITRCLYLEELPEG-IGKL 675 (961)
Q Consensus 599 ~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L 675 (961)
.++|++|+|++|. +..+ |..+..+++|++|+|++|.|+.+|.. +.++++|++|+|++|. +..+|.. +..+
T Consensus 39 ~~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l 111 (229)
T 3e6j_A 39 PTNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRL 111 (229)
T ss_dssp CTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred CCCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcc
Confidence 3789999999998 6666 67788999999999999999998865 6899999999999998 6666654 6889
Q ss_pred cCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCcccccc
Q 002132 676 INMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRR 740 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~ 740 (961)
++|++|++++|. +..+|..+..+++|++|+ ...|.+....+..+..+++|+.|++.+|..
T Consensus 112 ~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 112 VHLKELFMCCNK-LTELPRGIERLTHLTHLA----LDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTCCEEECCSSC-CCSCCTTGGGCTTCSEEE----CCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred hhhCeEeccCCc-ccccCcccccCCCCCEEE----CCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 999999999996 568888888888898888 666666554444566666666666655543
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=3.2e-11 Score=117.00 Aligned_cols=125 Identities=26% Similarity=0.309 Sum_probs=83.5
Q ss_pred CCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccc-cchh
Q 002132 569 VKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRK-LPET 647 (961)
Q Consensus 569 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~-Lp~~ 647 (961)
.++|+.|.+.++.+.. +. ++..+..+++|++|++++|. +..+ ..++.+++|++|+|++|.++. +|..
T Consensus 23 ~~~L~~L~l~~n~l~~----~~-i~~~~~~l~~L~~L~l~~n~------l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSND----GK-IEGLTAEFVNLEFLSLINVG------LISV-SNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp TTSCSEEECCSCBCBT----TB-CSSCCGGGGGCCEEEEESSC------CCCC-SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred cccCCEEECCCCCCCh----hh-HHHHHHhCCCCCEEeCcCCC------CCCh-hhhccCCCCCEEECcCCcCchHHHHH
Confidence 3567777777665321 11 22235667777777777776 5555 567777777777777777776 6666
Q ss_pred hhccCCCcEEeecCcccccccc--hhhhcccCCceeecCCccccccccc----cCCCCCCCCcCCc
Q 002132 648 LCELYNLEKLYITRCLYLEELP--EGIGKLINMKHLLNYRTDSLRYMPV----GIGRLTGLRTLDE 707 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~ 707 (961)
+.++++|++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|+.
T Consensus 91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETT
T ss_pred HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecC
Confidence 6667777777777776 55555 567777777777777775 344554 5677777777774
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=3.9e-11 Score=117.30 Aligned_cols=126 Identities=23% Similarity=0.240 Sum_probs=90.5
Q ss_pred ccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccccc
Q 002132 565 PICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKL 644 (961)
Q Consensus 565 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~L 644 (961)
.+..+.+|+.|.+.++.+.. ++.+...+++|++|++++|. +..+ ..++.+++|++|+|++|.|+.+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-------i~~~~~~~~~L~~L~Ls~N~------l~~~-~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-------IENLGATLDQFDAIDFSDNE------IRKL-DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-------CCCGGGGTTCCSEEECCSSC------CCEE-CCCCCCSSCCEEECCSSCCCEE
T ss_pred hcCCcCCceEEEeeCCCCch-------hHHhhhcCCCCCEEECCCCC------CCcc-cccccCCCCCEEECCCCccccc
Confidence 34567788888888876431 12223334488888888887 6666 5678888888888888888888
Q ss_pred chhh-hccCCCcEEeecCcccccccch--hhhcccCCceeecCCcccccccccc----CCCCCCCCcCC
Q 002132 645 PETL-CELYNLEKLYITRCLYLEELPE--GIGKLINMKHLLNYRTDSLRYMPVG----IGRLTGLRTLD 706 (961)
Q Consensus 645 p~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~ 706 (961)
|..+ ..+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|+
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeC
Confidence 7665 788888888888887 677776 67888888888888885 3455543 55566666655
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.16 E-value=3.3e-11 Score=132.79 Aligned_cols=169 Identities=17% Similarity=0.167 Sum_probs=109.3
Q ss_pred EEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhh-cCCceeEEecCCCCCCCCccccccC-cccccc
Q 002132 551 HLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFR-ESTSLRALDFWGSYDVSPFWTLKIP-RNIEKL 628 (961)
Q Consensus 551 ~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L 628 (961)
.+.+..+....++..+ ...++.|.+.++.+. .++...|. .+++|++|+|++|. +..++ ..+..+
T Consensus 22 ~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~------~l~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l 87 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL--PSYTALLDLSHNNLS------RLRAEWTPTRLTNLHSLLLSHNH------LNFISSEAFVPV 87 (361)
T ss_dssp EEECCSSCCSSCCSSC--CTTCSEEECCSSCCC------EECTTSSSSCCTTCCEEECCSSC------CCEECTTTTTTC
T ss_pred EEEeCCCCcCccCccC--CCCCCEEECCCCCCC------ccChhhhhhcccccCEEECCCCc------CCccChhhccCC
Confidence 3444444444333332 245788888887643 22334455 78888888888887 76765 457888
Q ss_pred CccceEEecCCcccccch-hhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccC----CCCCCCC
Q 002132 629 VHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGI----GRLTGLR 703 (961)
Q Consensus 629 ~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i----~~L~~L~ 703 (961)
++|++|+|++|.++.+|. .+.++.+|++|+|++|.+....|..+..+++|++|++++|. +..+|..+ ..+++|+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCC
Confidence 888888888888887765 47888888888888888444446678888888888888885 45566553 4567777
Q ss_pred cCCceEeCCCCCcCCCcccccccccC--CCcCCcccc
Q 002132 704 TLDEFHVIGGGGVDGRKACWFESLKN--LKHLQVCGI 738 (961)
Q Consensus 704 ~L~~~~~~~~~~~~~~~~~~l~~L~~--L~~L~~~~~ 738 (961)
.|+ .+.|.+.......+..++. |+.|++.+|
T Consensus 167 ~L~----L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 167 LLD----LSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp EEE----CCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred EEE----CCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 776 5555555443334444443 244444443
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.15 E-value=2.2e-11 Score=115.46 Aligned_cols=126 Identities=19% Similarity=0.193 Sum_probs=91.8
Q ss_pred cCCceeEEecCCCCCCCCcccc--ccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhhhcc
Q 002132 598 ESTSLRALDFWGSYDVSPFWTL--KIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGIGKL 675 (961)
Q Consensus 598 ~~~~Lr~L~L~~~~~~~~~~~~--~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 675 (961)
..+.|+.|++++|. +. .+|..++.+++|++|++++|.++.+ ..++++++|++|++++|.....+|..+..+
T Consensus 15 ~~~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CCccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 45678888888887 55 6777778888888888888888877 667888888888888887444477777778
Q ss_pred cCCceeecCCcccccccc--ccCCCCCCCCcCCceEeCCCCCcCCCcc---cccccccCCCcCCc
Q 002132 676 INMKHLLNYRTDSLRYMP--VGIGRLTGLRTLDEFHVIGGGGVDGRKA---CWFESLKNLKHLQV 735 (961)
Q Consensus 676 ~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~~---~~l~~L~~L~~L~~ 735 (961)
++|++|++++|. +..+| ..++.+++|++|+ ..++.+....+ ..+..+++|+.|++
T Consensus 88 ~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~----l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 88 PNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLD----LFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEE----CTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCEEECCCCc-CCChHHHHHHhhCCCCCEEe----CcCCcccchHHHHHHHHHHCCCcccccC
Confidence 888888888886 34433 6677888888877 55665554433 35666777776665
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=7e-12 Score=150.71 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=100.6
Q ss_pred ccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc
Q 002132 563 RVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR 642 (961)
Q Consensus 563 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~ 642 (961)
+..+..++.|+.|.+.++.+. .++.. +..+++|++|+|++|. +..+|..|++|++|++|+|++|.|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~------~l~~~-~~~l~~L~~L~Ls~N~------l~~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF------NISAN-IFKYDFLTRLYLNGNS------LTELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp -----CCCCCCEEECTTSCCS------CCCGG-GGGCCSCSCCBCTTSC------CSCCCGGGGGGTTCCEEECTTSCCS
T ss_pred hhhhccCCCCcEEECCCCCCC------CCChh-hcCCCCCCEEEeeCCc------CcccChhhhCCCCCCEEeCcCCcCC
Confidence 445677899999999998754 23334 3489999999999998 8899999999999999999999999
Q ss_pred ccchhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCC
Q 002132 643 KLPETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIG 697 (961)
Q Consensus 643 ~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 697 (961)
.+|..|++|.+|++|+|++|. +..+|..|++|++|++|++++|.....+|..+.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred ccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 999999999999999999998 779999999999999999999976555555443
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.13 E-value=9.4e-11 Score=116.27 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=67.7
Q ss_pred ceeEEecCCCCCCCCccccccCcc--ccccCccceEEecCCccccc-chhhhccCCCcEEeecCcccccccchhhhcccC
Q 002132 601 SLRALDFWGSYDVSPFWTLKIPRN--IEKLVHLRYLNLSCQNIRKL-PETLCELYNLEKLYITRCLYLEELPEGIGKLIN 677 (961)
Q Consensus 601 ~Lr~L~L~~~~~~~~~~~~~lp~~--i~~L~~Lr~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 677 (961)
.|++|++++|. +..++.. ++.+++|++|+|++|.|+.+ |..+.++++|++|+|++|......|..+..+++
T Consensus 30 ~l~~L~l~~n~------i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 30 HTTELLLNDNE------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp TCSEEECCSCC------CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred CCCEEECCCCc------CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence 67777777776 6666543 67777777777777777766 566777777777777777733333444677777
Q ss_pred CceeecCCccccccccccCCCCCCCCcCC
Q 002132 678 MKHLLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
|++|++++|......|..+..+++|++|+
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 77777777765444556666666666665
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=5.3e-11 Score=116.35 Aligned_cols=130 Identities=19% Similarity=0.250 Sum_probs=100.1
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccC-ccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhh-h
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLV-HLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGI-G 673 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~-~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~ 673 (961)
+..+..|++|++++|. +..+|. +..+. +|++|++++|.++.+ ..+.++++|++|++++|. +..+|..+ .
T Consensus 15 ~~~~~~L~~L~l~~n~------l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~ 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK------IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQ 85 (176)
T ss_dssp EECTTSCEEEECTTSC------CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHH
T ss_pred cCCcCCceEEEeeCCC------CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhh
Confidence 5678899999999998 777765 55555 999999999999988 679999999999999998 67777665 8
Q ss_pred cccCCceeecCCccccccccc--cCCCCCCCCcCCceEeCCCCCcCCCccc---ccccccCCCcCCccccc
Q 002132 674 KLINMKHLLNYRTDSLRYMPV--GIGRLTGLRTLDEFHVIGGGGVDGRKAC---WFESLKNLKHLQVCGIR 739 (961)
Q Consensus 674 ~L~~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~---~l~~L~~L~~L~~~~~~ 739 (961)
.+++|++|++++|. +..+|. .++.+++|+.|+ ..++.+...... .+..+++|+.|++..+.
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~----l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLC----ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEE----CCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEE----ecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999999996 466775 677788888877 555544322111 25566666666665543
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.12 E-value=1.5e-10 Score=114.80 Aligned_cols=99 Identities=20% Similarity=0.328 Sum_probs=64.7
Q ss_pred CceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccch-hhhccCCCcEEeecCccccccc-chhhhcccC
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLEEL-PEGIGKLIN 677 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~ 677 (961)
+.|++|+|++|. +..+|..+..+.+|++|+|++|.|+.++. .+.++++|++|+|++|. +..+ |..+..+++
T Consensus 31 ~~l~~L~L~~n~------i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~ 103 (193)
T 2wfh_A 31 RDVTELYLDGNQ------FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKS 103 (193)
T ss_dssp TTCCEEECCSSC------CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTT
T ss_pred CCCCEEECCCCc------CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCC
Confidence 467777777776 66677677777777777777777776653 46777777777777776 3334 345667777
Q ss_pred CceeecCCccccccccc-cCCCCCCCCcCC
Q 002132 678 MKHLLNYRTDSLRYMPV-GIGRLTGLRTLD 706 (961)
Q Consensus 678 L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~ 706 (961)
|++|++++|. +..+|. .+..+++|+.|+
T Consensus 104 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 104 LRLLSLHGND-ISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CCEEECCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCC-CCeeChhhhhcCccccEEE
Confidence 7777777775 334443 355566666555
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=2.4e-12 Score=128.70 Aligned_cols=104 Identities=22% Similarity=0.280 Sum_probs=85.5
Q ss_pred HHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccCCCcEEeecCcccccccchhh
Q 002132 593 EELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELYNLEKLYITRCLYLEELPEGI 672 (961)
Q Consensus 593 ~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~i 672 (961)
+..+..+++|++|++++|. +..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+
T Consensus 41 ~~~~~~l~~L~~L~ls~n~------l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~ 111 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNN------IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GI 111 (198)
T ss_dssp HHHHHHTTTCSEEECSEEE------ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred hHHHhcCCCCCEEECCCCC------Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence 3357889999999999987 77788 8888999999999999999999888888999999999987 66677 58
Q ss_pred hcccCCceeecCCccccccccc--cCCCCCCCCcCC
Q 002132 673 GKLINMKHLLNYRTDSLRYMPV--GIGRLTGLRTLD 706 (961)
Q Consensus 673 ~~L~~L~~L~l~~~~~~~~~p~--~i~~L~~L~~L~ 706 (961)
..+++|++|++++|. +..+|. .+..+++|++|+
T Consensus 112 ~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence 889999999999885 444443 577777777777
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.05 E-value=3.1e-10 Score=112.51 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=62.4
Q ss_pred CccEEEecCCCCCCCccchhhhH-HHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCcccccchh-
Q 002132 571 RIRSLLIDNSRTSCSYFNGEILE-ELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKLPET- 647 (961)
Q Consensus 571 ~Lr~L~l~~~~~~~~~~~~~~~~-~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~Lp~~- 647 (961)
+++.|.+.++.+.. +++ .+|..+++|++|+|++|. +..+ |..+..+++|++|+|++|.|+.+|..
T Consensus 30 ~l~~L~l~~n~i~~------~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 30 HTTELLLNDNELGR------ISSDGLFGRLPHLVKLELKRNQ------LTGIEPNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp TCSEEECCSCCCCS------BCCSCSGGGCTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CCCEEECCCCcCCc------cCCccccccCCCCCEEECCCCC------CCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence 66666666665321 111 135566666666666666 4444 45566666666666666666655443
Q ss_pred hhccCCCcEEeecCcccccccchhhhcccCCceeecCCcc
Q 002132 648 LCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTD 687 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 687 (961)
+.++++|++|+|++|......|..+..+++|++|++++|.
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 5666666666666666444445566666666666666664
No 145
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=1.2e-09 Score=118.63 Aligned_cols=187 Identities=15% Similarity=0.122 Sum_probs=118.2
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC-CeEEEEEeCCcccHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF-DKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i 261 (961)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+ ..+++++.+....... ++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 56999999999999998743 223389999999999999999998531 1111 1244444433222211 1222
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhh-hhhhccCC
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESI-TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSV-ASMMGSTD 339 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~-~~~~~~~~ 339 (961)
++.+... ...+ .+++.++|+||++......++.+...+.....++++|+||+.... ...+.. .
T Consensus 93 ~~~~~~~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s-r 157 (323)
T 1sxj_B 93 IKHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS-Q 157 (323)
T ss_dssp HHHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT-T
T ss_pred HHHHHhc--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh-h
Confidence 2211100 0011 456899999999887655667777777766667888888876431 111111 1
Q ss_pred cceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchh-HHHHHH
Q 002132 340 TDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLA-AKTIGS 396 (961)
Q Consensus 340 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLa-i~~~~~ 396 (961)
...+++.+++.++..+++...+...+. .. ..+....|++.|+|.|.. +..+..
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDV-KY---TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 257999999999999999887632211 11 134577899999999954 444433
No 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.03 E-value=9e-10 Score=119.51 Aligned_cols=278 Identities=15% Similarity=0.109 Sum_probs=146.2
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
-.+++|++..++.+..++...... ......+.|+|++|+|||++|+.+++.. . ...++++.+......++
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~~--~---~~~~~~~~~~~~~~~~l---- 80 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHEL--G---VNLRVTSGPAIEKPGDL---- 80 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHHH--T---CCEEEECTTTCCSHHHH----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHHh--C---CCEEEEeccccCChHHH----
Confidence 356999999999988877532110 1123568899999999999999998842 2 22345544433222221
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC------------------CCcEEE
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL------------------HGSKIL 323 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 323 (961)
...+...+ .+..+|+|||++.........+...+.... .+.++|
T Consensus 81 -----------------~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 81 -----------------AAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -----------------HHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -----------------HHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 11111111 345689999998765444455555554321 234566
Q ss_pred EEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhhccC-
Q 002132 324 VTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLMRSK- 401 (961)
Q Consensus 324 vTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l~~~- 401 (961)
.||.... +...+...-...+.+.+++.++..+++.+.+..... .. ..+..+.|++.+.|.|..+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RI---TEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6666442 111111111147899999999999999887743322 11 13567889999999998877665544211
Q ss_pred -------CCHHHHHHHhcCcc---cchhhhhhhHHHHHHHhhcCCChhhHHHHhhhccCCCCCccChHHHH----HHHHH
Q 002132 402 -------QIEEEWERISNSDL---WRVEEMEKGVLSSLLLSYNDLPSKVKICFSYCAVFPKNYNIKKDELL----TLWMA 467 (961)
Q Consensus 402 -------~~~~~w~~~~~~~~---~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~~~fp~~~~i~~~~Li----~~w~a 467 (961)
-+.+....+..... ..+...+..+...+...|..=+.....+-..+++ ++..+. .+-+.
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi-------~~~tl~~~l~~~~i~ 291 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSE-------DPGTLEEVHEPYLIR 291 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTS-------CHHHHHHHTHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCC-------CHHHHHHHHhHHHHH
Confidence 12233332221100 0011111112222222222212122222222222 232222 23456
Q ss_pred cCCcccC-CCCcHHHHHHHHHH-HHHhCCCccc
Q 002132 468 QGYLSAK-QNKEMETIGEEYFS-ILASRSFFQE 498 (961)
Q Consensus 468 ~g~i~~~-~~~~~~~~~~~~~~-~L~~~~li~~ 498 (961)
.|++... .+....+.|.+||+ ++.+|+|||+
T Consensus 292 ~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 292 QGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp TTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 7888654 45667788888887 8888888875
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=1.6e-09 Score=107.22 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=63.5
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCcccccch-h
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIRKLPE-T 647 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~Lp~-~ 647 (961)
++|+.|.+.++.+. .++ ..|..+++|++|+|++|. +..++ ..+..+++|++|+|++|.|+.+|. .
T Consensus 31 ~~l~~L~L~~n~i~------~ip-~~~~~l~~L~~L~Ls~N~------i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGNQFT------LVP-KELSNYKHLTLIDLSNNR------ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97 (193)
T ss_dssp TTCCEEECCSSCCC------SCC-GGGGGCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred CCCCEEECCCCcCc------hhH-HHhhcccCCCEEECCCCc------CCEeCHhHccCCCCCCEEECCCCccCEeCHHH
Confidence 45666666666543 112 345666667777776666 55554 346666667777777666666544 4
Q ss_pred hhccCCCcEEeecCcccccccch-hhhcccCCceeecCCcc
Q 002132 648 LCELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTD 687 (961)
Q Consensus 648 i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 687 (961)
+.++++|++|+|++|. +..+|. .+..+++|++|++++|.
T Consensus 98 f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred hCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 6666667777776666 445554 35566666777666664
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=1.1e-09 Score=119.08 Aligned_cols=289 Identities=13% Similarity=0.140 Sum_probs=140.9
Q ss_pred CCCccEEEecCCCCCCCccchhhhHHHhhc-CCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchh
Q 002132 569 VKRIRSLLIDNSRTSCSYFNGEILEELFRE-STSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPET 647 (961)
Q Consensus 569 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~ 647 (961)
+.+++.|.+.+.- ....+.. +.. +++|++|||++|. +......-+.++.++++.+..+.|. +..
T Consensus 24 ~~~l~~L~l~g~i------~~~~~~~-l~~~l~~L~~LdLs~n~------i~~~~~~~~~~~~~~~~~~~~~~I~--~~a 88 (329)
T 3sb4_A 24 ANSITHLTLTGKL------NAEDFRH-LRDEFPSLKVLDISNAE------IKMYSGKAGTYPNGKFYIYMANFVP--AYA 88 (329)
T ss_dssp HHHCSEEEEEEEE------CHHHHHH-HHHSCTTCCEEEEEEEE------ECCEEESSSSSGGGCCEEECTTEEC--TTT
T ss_pred hCceeEEEEeccc------cHHHHHH-HHHhhccCeEEecCcce------eEEecCccccccccccccccccccC--HHH
Confidence 4456677766531 1122222 334 7889999999887 5421111123333566666655332 123
Q ss_pred hhc--------cCCCcEEeecCcccccccch-hhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCC
Q 002132 648 LCE--------LYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDG 718 (961)
Q Consensus 648 i~~--------L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~ 718 (961)
+.+ +.+|+.|+|.+ . +..++. .|..+++|+.|++.+|......+..+..+.++..+. ....
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~----~~~~---- 158 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP----LGSS---- 158 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC----TTCT----
T ss_pred hcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec----Ccch----
Confidence 556 88888888887 4 666654 577888888888888753332233354444444333 1110
Q ss_pred CcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCC-eEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCc
Q 002132 719 RKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLS-CLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLK 797 (961)
Q Consensus 719 ~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 797 (961)
........+... .+..+..|+ .+.+... ......+...-..+.++.
T Consensus 159 ---~~~~~~~~i~~~--------------------~f~~~~~L~~~i~~~~~----------~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 159 ---DAYRFKNRWEHF--------------------AFIEGEPLETTIQVGAM----------GKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp ---HHHHTSTTTTTS--------------------CEEESCCCEEEEEECTT----------CCHHHHHHHTTCCGGGCS
T ss_pred ---hhhhcccccccc--------------------ccccccccceeEEecCC----------CcHHHHHhhcccCccccc
Confidence 000000000000 111222222 1111100 011122222222344555
Q ss_pred eEEEeeecCCCCCCCcc-ccccCccEEEEeCCCCCCcCCC-CCCccccceeecccccCceEeCCcccCCcccCcCcccc-
Q 002132 798 ELEIRFYRGNTVFPNWL-MSLTNLRSLVLYGCENCEQLPP-LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLK- 874 (961)
Q Consensus 798 ~L~l~~~~~~~~lp~~~-~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~- 874 (961)
.+.+.++.... -...+ ..+++|+.|+|.+|.+....+. +.++++|+.|.|.++ ++.++...| .++++|+
T Consensus 206 ~l~~~~~l~~~-~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF-----~~~~~L~~ 277 (329)
T 3sb4_A 206 FLTIEGKLDNA-DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVF-----SNCGRLAG 277 (329)
T ss_dssp EEEEEECCCHH-HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-----TTCTTCCE
T ss_pred eEEEeeeecHH-HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHh-----hCChhccE
Confidence 55555532111 01111 1356677777766654332222 666777777777664 666665543 3556666
Q ss_pred eeeccccccccccccccccccccccccccccceecccccccCcCCCC-CCCCCCCccEEE
Q 002132 875 SLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPD-HIHQTTTLKELR 933 (961)
Q Consensus 875 ~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~ 933 (961)
.+.+.+ +++.+.. ..+..+++|+.|++.++. ++.++. .+.++++|+.|+
T Consensus 278 ~l~l~~--~l~~I~~-------~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA--SVTAIEF-------GAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECT--TCCEECT-------TTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred EEEEcc--cceEEch-------hhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 666665 3333321 123356777777765543 555554 455667777665
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=2.1e-09 Score=104.97 Aligned_cols=99 Identities=30% Similarity=0.443 Sum_probs=44.9
Q ss_pred CceeEEecCCCCCCCCccccccCc-cccccCccceEEecCCcccccchh-hhccCCCcEEeecCcccccccch-hhhccc
Q 002132 600 TSLRALDFWGSYDVSPFWTLKIPR-NIEKLVHLRYLNLSCQNIRKLPET-LCELYNLEKLYITRCLYLEELPE-GIGKLI 676 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~ 676 (961)
+.|++|++++|. +..+|. .+..+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|. .+..++
T Consensus 28 ~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNK------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLT 100 (177)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCcEEEeCCCc------ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCc
Confidence 345555555554 333332 234455555555555555544433 3455555555555554 333332 234455
Q ss_pred CCceeecCCcccccccccc-CCCCCCCCcCC
Q 002132 677 NMKHLLNYRTDSLRYMPVG-IGRLTGLRTLD 706 (961)
Q Consensus 677 ~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~ 706 (961)
+|++|++++|. +..+|.. +..+++|++|+
T Consensus 101 ~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 101 QLKELALDTNQ-LKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred ccCEEECcCCc-ceEeCHHHhcCCcccCEEE
Confidence 55555555543 2233332 24444444444
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.92 E-value=2.7e-11 Score=121.03 Aligned_cols=115 Identities=19% Similarity=0.178 Sum_probs=97.2
Q ss_pred ccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc
Q 002132 563 RVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR 642 (961)
Q Consensus 563 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~ 642 (961)
+..+..+++|+.|.+.++.+.. ++ .+..+++|++|++++|. +..+|..+..+++|++|++++|.++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~------l~--~~~~l~~L~~L~l~~n~------l~~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK------IS--SLSGMENLRILSLGRNL------IKKIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC------CC--CHHHHTTCCEEEEEEEE------ECSCSSHHHHHHHCSEEEEEEEECC
T ss_pred hHHHhcCCCCCEEECCCCCCcc------cc--ccccCCCCCEEECCCCC------cccccchhhcCCcCCEEECcCCcCC
Confidence 3467789999999999886432 22 47889999999999998 8889998888999999999999999
Q ss_pred ccchhhhccCCCcEEeecCcccccccch--hhhcccCCceeecCCcccccccc
Q 002132 643 KLPETLCELYNLEKLYITRCLYLEELPE--GIGKLINMKHLLNYRTDSLRYMP 693 (961)
Q Consensus 643 ~Lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p 693 (961)
.+| .+.++++|++|++++|. +..+|. .+..+++|++|++++|......|
T Consensus 107 ~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 107 SLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp CHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 988 69999999999999998 666654 78899999999999997544434
No 151
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.89 E-value=3.3e-08 Score=104.15 Aligned_cols=175 Identities=9% Similarity=-0.023 Sum_probs=110.0
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhc---C--CeEEEEEeCCcccHHHHH
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRK---F--DKLLWVCVSDPFEQFRVA 258 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---f--~~~~wv~~s~~~~~~~~~ 258 (961)
.+.||++|++++...|...-. .+..+.+.|+|++|+|||++|+.|++....... . -.+++|++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 378999999999988875433 335678899999999999999999996432111 1 136677777778888999
Q ss_pred HHHHHHcCCCCCCC-CCHHHHHHHHHHH--hCCceEEEEEeCCCCCCccChhhhHHhhhCC-CCCc--EEEEEccchh--
Q 002132 259 KAIAEALGIPSSNL-GEFQSLLKLISES--ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNG-LHGS--KILVTTRKKS-- 330 (961)
Q Consensus 259 ~~i~~~l~~~~~~~-~~~~~l~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs--~iivTtR~~~-- 330 (961)
..|++++.+..... ...+.+...+... -.++++++|||+++... .-+.+...+... ...+ .||.++...+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 99999996543222 2233444443332 24678999999998764 223444444311 1222 3333443322
Q ss_pred ---hhhhhc-cCCcceEEcCCCCHHHHHHHHHHHHc
Q 002132 331 ---VASMMG-STDTDIITVMELTEEECWSLFKRLAF 362 (961)
Q Consensus 331 ---~~~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~ 362 (961)
+..... ......+.+.|++.+|-.+++.+++-
T Consensus 177 ~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 111111 11124699999999999999988763
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=6.1e-09 Score=101.69 Aligned_cols=125 Identities=19% Similarity=0.287 Sum_probs=94.5
Q ss_pred eeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchh-hhccCCCcEEeecCcccccccchh-hhcccCCc
Q 002132 602 LRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPET-LCELYNLEKLYITRCLYLEELPEG-IGKLINMK 679 (961)
Q Consensus 602 Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~ 679 (961)
.+.++++++. +..+|..+. .+|++|++++|.++.+|.. +.++++|++|++++|. +..+|.. +..+++|+
T Consensus 9 ~~~l~~~~~~------l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKG------LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLT 79 (177)
T ss_dssp TTEEECCSSC------CSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCEEEecCCC------CccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccC
Confidence 5778888887 788886554 6999999999999988765 6899999999999998 6666654 68999999
Q ss_pred eeecCCccccccccc-cCCCCCCCCcCCceEeCCCCCcCCCcccccccccCCCcCCcccccc
Q 002132 680 HLLNYRTDSLRYMPV-GIGRLTGLRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRR 740 (961)
Q Consensus 680 ~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~ 740 (961)
+|++++|.. ..+|. .+..+++|++|+ ...+.+....+..+..+++|+.|++.++..
T Consensus 80 ~L~l~~N~l-~~~~~~~~~~l~~L~~L~----l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 80 ILYLHENKL-QSLPNGVFDKLTQLKELA----LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp EEECCSSCC-CCCCTTTTTTCTTCCEEE----CCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCCc-cccCHHHhhCCcccCEEE----CcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 999999964 45554 467888888887 566655544444455666666666655544
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=1.3e-08 Score=110.38 Aligned_cols=186 Identities=15% Similarity=0.049 Sum_probs=118.6
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC-CeEEEEEeCCcccHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF-DKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i 261 (961)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+ ...+.+..+....... ++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINV-IREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHT-THHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHH-HHHH
Confidence 46999999999999988743 233489999999999999999998531 1111 1234444333211111 1111
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHH--h-CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhh-hhhhcc
Q 002132 262 AEALGIPSSNLGEFQSLLKLISES--I-TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSV-ASMMGS 337 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~-~~~~~~ 337 (961)
+. ..... + .+++.++|+||++......+..+...+.....++++|+||..... ...+..
T Consensus 97 ~~-----------------~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 97 VK-----------------EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp HH-----------------HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HH-----------------HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 11 11110 1 256889999999887656677787777766667888888876532 111111
Q ss_pred CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHHhh
Q 002132 338 TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGSLM 398 (961)
Q Consensus 338 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~~l 398 (961)
....+.+.+++.++..+++...+...+. . -..+..+.|++.++|.|..+..+...+
T Consensus 160 -r~~~~~~~~l~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 160 -RCAIFRFRPLRDEDIAKRLRYIAENEGL-E---LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp -TEEEEECCCCCHHHHHHHHHHHHHTTTC-E---ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hCcEEEecCCCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1257899999999999999887643221 1 113567788999999998665554433
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=1.2e-08 Score=99.07 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=46.5
Q ss_pred CceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCcccccchh-hhccCCCcEEeecCcccccccchh-hhccc
Q 002132 600 TSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKLPET-LCELYNLEKLYITRCLYLEELPEG-IGKLI 676 (961)
Q Consensus 600 ~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~ 676 (961)
+.|++|+|++|. +..+ |..+.++++|++|+|++|.|+.+|.. +.++++|++|+|++|. +..+|.. +..++
T Consensus 33 ~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNNQ------ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLK 105 (174)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred CCCcEEEeCCCC------ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhcccc
Confidence 556666666665 4444 34455666666666666666665554 3556666666666655 4444443 55566
Q ss_pred CCceeecCCcc
Q 002132 677 NMKHLLNYRTD 687 (961)
Q Consensus 677 ~L~~L~l~~~~ 687 (961)
+|++|++++|.
T Consensus 106 ~L~~L~L~~N~ 116 (174)
T 2r9u_A 106 SLTHIYLYNNP 116 (174)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 66666666553
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=7.9e-09 Score=100.26 Aligned_cols=101 Identities=25% Similarity=0.361 Sum_probs=80.2
Q ss_pred eEEecCCCCCCCCccccccCccccccCccceEEecCCccccc-chhhhccCCCcEEeecCcccccccchh-hhcccCCce
Q 002132 603 RALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKL-PETLCELYNLEKLYITRCLYLEELPEG-IGKLINMKH 680 (961)
Q Consensus 603 r~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~ 680 (961)
+.++++++. +..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +.++++|++
T Consensus 15 ~~l~~~~n~------l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIR------LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSC------CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCC------CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhE
Confidence 678888887 788888765 7899999999998877 5678889999999999987 6677765 478999999
Q ss_pred eecCCcccccccccc-CCCCCCCCcCCceEeCCCCCcC
Q 002132 681 LLNYRTDSLRYMPVG-IGRLTGLRTLDEFHVIGGGGVD 717 (961)
Q Consensus 681 L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~ 717 (961)
|++++|. +..+|.. +..+++|++|+ ..+|.+.
T Consensus 86 L~L~~N~-l~~l~~~~~~~l~~L~~L~----L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDNH-LKSIPRGAFDNLKSLTHIY----LYNNPWD 118 (174)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCSEEE----CCSSCBC
T ss_pred EECCCCc-cceeCHHHhccccCCCEEE----eCCCCcc
Confidence 9999886 4566655 78888888887 5555443
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=1.4e-08 Score=98.07 Aligned_cols=94 Identities=26% Similarity=0.357 Sum_probs=45.6
Q ss_pred eEEecCCCCCCCCccccccCccccccCccceEEecCCccccc-chhhhccCCCcEEeecCcccccccchh-hhcccCCce
Q 002132 603 RALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKL-PETLCELYNLEKLYITRCLYLEELPEG-IGKLINMKH 680 (961)
Q Consensus 603 r~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~ 680 (961)
++|+++++. +..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+|.. +.++++|++
T Consensus 12 ~~l~~s~n~------l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 12 TTVDCSGKS------LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TEEECTTSC------CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CEEEeCCCC------cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCE
Confidence 445555554 444554442 4555555555555544 3335555555555555554 3344332 345555555
Q ss_pred eecCCccccccccc-cCCCCCCCCcCC
Q 002132 681 LLNYRTDSLRYMPV-GIGRLTGLRTLD 706 (961)
Q Consensus 681 L~l~~~~~~~~~p~-~i~~L~~L~~L~ 706 (961)
|++++|. +..+|. .+..+++|+.|+
T Consensus 83 L~L~~N~-l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 83 LSLNDNQ-LKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred EECCCCc-cCEeCHHHhcCCCCCCEEE
Confidence 5555553 233333 244455555444
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.71 E-value=1.9e-08 Score=97.29 Aligned_cols=101 Identities=17% Similarity=0.274 Sum_probs=80.7
Q ss_pred ccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCcccccc-CccccccCccceEEecCCcccccchh-hh
Q 002132 572 IRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKI-PRNIEKLVHLRYLNLSCQNIRKLPET-LC 649 (961)
Q Consensus 572 Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~l-p~~i~~L~~Lr~L~L~~~~i~~Lp~~-i~ 649 (961)
.+++.+.++.... ++.. -.+.|++|+|++|. +..+ |..+..+.+|++|+|++|.|+.+|.. +.
T Consensus 11 ~~~l~~s~n~l~~------ip~~---~~~~l~~L~L~~N~------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLAS------VPTG---IPTTTQVLYLYDNQ------ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp TTEEECTTSCCSS------CCSC---CCTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEeCCCCcCc------cCcc---CCCCCcEEEcCCCc------CCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 4677777765431 2222 14789999999998 7777 56789999999999999999998876 58
Q ss_pred ccCCCcEEeecCcccccccch-hhhcccCCceeecCCccc
Q 002132 650 ELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTDS 688 (961)
Q Consensus 650 ~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 688 (961)
++++|++|+|++|. +..+|. .+..+++|++|++++|..
T Consensus 76 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 76 KLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 99999999999998 666766 488999999999999863
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=8.8e-09 Score=111.80 Aligned_cols=126 Identities=11% Similarity=0.053 Sum_probs=90.0
Q ss_pred cccCccEEEEeCCCCCCcCCCC-CCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccc
Q 002132 816 SLTNLRSLVLYGCENCEQLPPL-GKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRT 894 (961)
Q Consensus 816 ~l~~L~~L~L~~~~~~~~l~~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~ 894 (961)
...++..+.+.++-.......+ ..+++|+.|+|.+|. ++.++...+ .++++|+.|.|.+. ++.++.
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF-----~~~~~L~~l~l~~n--i~~I~~----- 266 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTF-----AQKKYLLKIKLPHN--LKTIGQ----- 266 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTT-----TTCTTCCEEECCTT--CCEECT-----
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhh-----hCCCCCCEEECCcc--cceehH-----
Confidence 3667788888765321111111 137899999999876 888887655 57889999999874 555443
Q ss_pred cccccccccccc-eecccccccCcCCC-CCCCCCCCccEEEEcccccccccccCCCCcccceEEec
Q 002132 895 GNTVINIMPRLS-SLTIARCPKLKALP-DHIHQTTTLKELRIWACELLGKHYRGGTEKTGLKYHTF 958 (961)
Q Consensus 895 ~~~~~~~~p~L~-~L~l~~c~~L~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~ 958 (961)
..+..+++|+ .|.+.+ .++.++ ..+.+|++|+.|++.+|....-....+.+.++|+.+++
T Consensus 267 --~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 267 --RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp --TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred --HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 2245788999 999987 577776 56788999999999877655444556777888887654
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.68 E-value=1.4e-07 Score=104.28 Aligned_cols=196 Identities=14% Similarity=0.116 Sum_probs=116.8
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|++..++.+...+.... ....+.|+|++|+||||+|+.+++...-...+. ...+... .....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~----~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVC----DNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSS----HHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCccc----HHHHHHh
Confidence 459999999999999886432 234678999999999999999987532111110 0000000 0011111
Q ss_pred HHc-------CCC-CCCCCCHHHHHHHHHHH-hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hh
Q 002132 263 EAL-------GIP-SSNLGEFQSLLKLISES-ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VA 332 (961)
Q Consensus 263 ~~l-------~~~-~~~~~~~~~l~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~ 332 (961)
..- ... .....+...+...+... ..+++.++|+||++..+...++.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000 01112233332222111 235678999999988766667778777776666777777776443 21
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHH
Q 002132 333 SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIG 395 (961)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 395 (961)
..+.. ....+++.+++.++..+++.+.+...+. .. ..+....|++.++|.|..+..+.
T Consensus 164 ~~l~s-r~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILS-RCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHT-TSEEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHh-heeEeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 11111 1267999999999999999876532211 11 13457789999999998776654
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.64 E-value=1.2e-07 Score=102.43 Aligned_cols=183 Identities=12% Similarity=0.037 Sum_probs=114.2
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC-CeEEEEEeCCcccHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF-DKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i 261 (961)
.+++|++..++.+..++... ..+.+.++|++|+|||++|+.+++... ...+ ...+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 46899999999998888642 233489999999999999999988531 1111 1123344333111
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHH--h-CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hhhhhcc
Q 002132 262 AEALGIPSSNLGEFQSLLKLISES--I-TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VASMMGS 337 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~~~~~~ 337 (961)
..........+... + .+++.++|+|+++.........+...+.....+.++|+||.... +...+..
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh
Confidence 01111111111111 1 25688999999987655555667666666556778888876543 2111111
Q ss_pred CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHH
Q 002132 338 TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIG 395 (961)
Q Consensus 338 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 395 (961)
....+.+.+++.++..+++.+.+...+. .. ..+....|++.++|.+..+....
T Consensus 152 -r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i---~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 152 -RCAVFRFKPVPKEAMKKRLLEICEKEGV-KI---TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp -TCEEEECCCCCHHHHHHHHHHHHHTTCC-CB---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred -hCeEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1257999999999999999887643322 11 13456788899999998655443
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=2.7e-06 Score=94.23 Aligned_cols=124 Identities=13% Similarity=0.187 Sum_probs=75.3
Q ss_pred CCceEEEeeecCCCCC-CCccccccCccEEEEeCCCCC----CcCCC--CCCccccceeecccccCceEeCCcccCCccc
Q 002132 795 DLKELEIRFYRGNTVF-PNWLMSLTNLRSLVLYGCENC----EQLPP--LGKLQSLEKLSLTIMRSVKRVGDECLGIEII 867 (961)
Q Consensus 795 ~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~~~----~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 867 (961)
+|+.+.|.. .+.. + +..+..+++|+.+.+.++... ..++. +.++++|+.+.|.+ .++.++...+
T Consensus 249 ~L~~i~lp~-~i~~-I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF----- 319 (401)
T 4fdw_A 249 GITTVKLPN-GVTN-IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL----- 319 (401)
T ss_dssp CCSEEEEET-TCCE-ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTT-----
T ss_pred CccEEEeCC-CccE-EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh-----
Confidence 455555532 2222 3 344557777888887776543 12332 77888888888874 3777776554
Q ss_pred CcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCC-CCCCCCC-CccEEEEcccc
Q 002132 868 DAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALP-DHIHQTT-TLKELRIWACE 938 (961)
Q Consensus 868 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp-~~~~~l~-~L~~L~l~~~~ 938 (961)
.++++|+.+.|.+. ++.+.. ..+..+ +|+.|.+.++. +..++ ..+..++ ++..|++-.+.
T Consensus 320 ~~c~~L~~l~lp~~--l~~I~~-------~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN--VTQINF-------SAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTCCSCCEEEECTT--CCEECT-------TSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cCCCCccEEEECcc--ccEEcH-------HhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHHH
Confidence 46678888888552 444332 123456 88888888874 44444 3445554 67888887654
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.51 E-value=1.9e-06 Score=93.71 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=108.5
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
-.+++|++..++.+..++...... ......|.|+|++|+|||++|+.+++. .... .+.++.+....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~~-------- 93 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIEK-------- 93 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCCS--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhccc--------
Confidence 356999999999998888643110 123456899999999999999999873 2222 23333322111
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC------------------CCcEEE
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL------------------HGSKIL 323 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii 323 (961)
.......+.. ..+..+|+||+++.........+...+.... ++..+|
T Consensus 94 -------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 94 -------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111111111 2456789999998765444555655554432 124566
Q ss_pred EEccchhh-hhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHH
Q 002132 324 VTTRKKSV-ASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIG 395 (961)
Q Consensus 324 vTtR~~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 395 (961)
.||..... ...+...-...+.+.+++.++..+++.+.+..... .-..+..+.|++.+.|.|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 65554321 11111111157999999999999999887643221 1124567788889999996555443
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.51 E-value=1.1e-06 Score=97.33 Aligned_cols=234 Identities=16% Similarity=0.204 Sum_probs=123.8
Q ss_pred CCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCc-cccccCccceEEecCCcccccc-h
Q 002132 569 VKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPR-NIEKLVHLRYLNLSCQNIRKLP-E 646 (961)
Q Consensus 569 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~-~i~~L~~Lr~L~L~~~~i~~Lp-~ 646 (961)
+..+.++.+.+.-. .+....|.++ .|+.+.|..+ +..++. .+.+ .+|+.+.+.. .++.++ .
T Consensus 112 ~~~l~~i~ip~~i~-------~I~~~aF~~~-~L~~i~l~~~-------i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNSVK-------SIPKDAFRNS-QIAKVVLNEG-------LKSIGDMAFFN-STVQEIVFPS-TLEQLKED 174 (401)
T ss_dssp CSSCSEEECCTTCC-------EECTTTTTTC-CCSEEECCTT-------CCEECTTTTTT-CCCCEEECCT-TCCEECSS
T ss_pred cCCccEEEECCccC-------EehHhhcccC-CccEEEeCCC-------ccEECHHhcCC-CCceEEEeCC-CccEehHH
Confidence 45566666554321 2233346665 5777777655 444543 3444 3677777775 566554 4
Q ss_pred hhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccc-cCCCCCCCCcCCceEeCCCCCcCCCcccccc
Q 002132 647 TLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPV-GIGRLTGLRTLDEFHVIGGGGVDGRKACWFE 725 (961)
Q Consensus 647 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~ 725 (961)
.+.++.+|+.+++.+|. +..+|.......+|+.+.+..+ +..++. .+..+++|+.+. ...+ +.......
T Consensus 175 aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~----l~~~-l~~I~~~a-- 244 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIE----IPEN-VSTIGQEA-- 244 (401)
T ss_dssp TTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEE----CCTT-CCEECTTT--
T ss_pred HhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEe----cCCC-ccCccccc--
Confidence 47777888888887766 6667665555677777777644 333332 355555555554 1111 00000111
Q ss_pred cccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEEEeeec
Q 002132 726 SLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELEIRFYR 805 (961)
Q Consensus 726 ~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 805 (961)
+.+ .+|+.+.+..+ ... .-...+..+++|+.+.+.++.
T Consensus 245 -----------------------------F~~-~~L~~i~lp~~-i~~-----------I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 245 -----------------------------FRE-SGITTVKLPNG-VTN-----------IASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp -----------------------------TTT-CCCSEEEEETT-CCE-----------ECTTTTTTCTTCCEEEEESSC
T ss_pred -----------------------------ccc-CCccEEEeCCC-ccE-----------EChhHhhCCCCCCEEEeCCcc
Confidence 112 34444544211 100 001235556666666666554
Q ss_pred CC-----CCCCCccccccCccEEEEeCCCCCCcCCC--CCCccccceeecccccCceEeCCcccCCcccCcCcccceeec
Q 002132 806 GN-----TVFPNWLMSLTNLRSLVLYGCENCEQLPP--LGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTI 878 (961)
Q Consensus 806 ~~-----~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l 878 (961)
.. ..-+..+..+++|+.+.|.++ ...++. +.++++|+.+.|..+ ++.++...+ .++ +|+.+.+
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF-----~~~-~L~~l~l 352 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAF-----NNT-GIKEVKV 352 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSS-----SSS-CCCEEEE
T ss_pred ccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhC-----CCC-CCCEEEE
Confidence 43 112334456777777777643 233332 666777777777543 566655443 345 6777777
Q ss_pred ccc
Q 002132 879 SSM 881 (961)
Q Consensus 879 ~~~ 881 (961)
.++
T Consensus 353 ~~n 355 (401)
T 4fdw_A 353 EGT 355 (401)
T ss_dssp CCS
T ss_pred cCC
Confidence 665
No 164
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=1e-06 Score=96.55 Aligned_cols=196 Identities=11% Similarity=0.013 Sum_probs=116.3
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC-CeEEEEEeCCcccHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF-DKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~ 260 (961)
-.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++.......+ ..+..++.+....... +++
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 108 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VRE 108 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTT
T ss_pred HHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHH
Confidence 3568999999999999987432 2238899999999999999999853211112 1234444443222222 222
Q ss_pred HHHHcCCC-CCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hhhhhccC
Q 002132 261 IAEALGIP-SSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VASMMGST 338 (961)
Q Consensus 261 i~~~l~~~-~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~~~~~~~ 338 (961)
.+..+... ....... .....-.++.-+|++|+++.........+...+.......++|++|.... +.......
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22211100 0000000 00011124567999999987655555667777766555677777775443 11111111
Q ss_pred CcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 339 DTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 339 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
...+.+.+++.++..+++.+.+...+. .- ..+..+.|++.++|.|..+..+
T Consensus 184 -~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i---~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 184 -CSKFRFKALDASNAIDRLRFISEQENV-KC---DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp -SEEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHTSSCHHHHHHH
T ss_pred -CceEEeCCCCHHHHHHHHHHHHHHhCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 147899999999999999887643221 11 1356788999999999865444
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.51 E-value=3.3e-07 Score=90.57 Aligned_cols=152 Identities=15% Similarity=0.165 Sum_probs=84.3
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh-----cCCeEEEEEeCCcccHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-----KFDKLLWVCVSDPFEQFRV 257 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~f~~~~wv~~s~~~~~~~~ 257 (961)
..++||+++++++.+.+... ..+.+.|+|++|+|||+||+.+++...-.. ....+++++++. +
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 89 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 89 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H
Confidence 46899999999999998753 235578999999999999999988531100 122344443321 1
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHh--CCceEEEEEeCCCCCC-------ccC-hhhhHHhhhCCCCCcEEEEEcc
Q 002132 258 AKAIAEALGIPSSNLGEFQSLLKLISESI--TGKRFLLVLDDVWDGD-------CIK-WEPFYLCLKNGLHGSKILVTTR 327 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVlDdv~~~~-------~~~-~~~l~~~l~~~~~gs~iivTtR 327 (961)
. ... ............+.+.+ .+++.+|||||++... ... ...+...+.. .+..+|+||.
T Consensus 90 ~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 90 V-------AGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp H-------TTT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred h-------ccC-CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 0 000 00001111111111111 3568899999997642 112 2333333322 2345677766
Q ss_pred chhhhhh------hccCCcceEEcCCCCHHHHHHHH
Q 002132 328 KKSVASM------MGSTDTDIITVMELTEEECWSLF 357 (961)
Q Consensus 328 ~~~~~~~------~~~~~~~~~~l~~L~~~~~~~lf 357 (961)
....... +.. ....+.+.+++.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~-r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALER-RFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHT-TEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHH-HhceeecCCCCHHHHHHHh
Confidence 5543211 111 1236889999988877654
No 166
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.50 E-value=4.7e-07 Score=93.19 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=102.0
Q ss_pred Cceeccc---chHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 183 EEICGRV---GERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 183 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
.+|+|++ ..++.+..+.... ..+.+.|+|++|+||||||+.+++.. ......+.|++++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHHHHH-----
Confidence 3566633 4455555555422 34678899999999999999999853 333445677776542211
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccC--hhhhHHhhhCC-CCC-cEEEEEccchh-----
Q 002132 260 AIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIK--WEPFYLCLKNG-LHG-SKILVTTRKKS----- 330 (961)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~iivTtR~~~----- 330 (961)
+.+ .+ +.+ .+..+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -~~~-----------------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 -STA-----------------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -CGG-----------------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred -HHH-----------------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 000 00 011 345789999997654332 33344443221 122 24777776432
Q ss_pred ----hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHHH
Q 002132 331 ----VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIGS 396 (961)
Q Consensus 331 ----~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~~ 396 (961)
+...+... ..+.+.+++.++..+++...+...+. .. ..+..+.|++.++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~--~~i~l~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWG--LTYQLQPMMDDEKLAALQRRAAMRGL-QL---PEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHS--EEEECCCCCGGGHHHHHHHHHHHTTC-CC---CHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcC--ceEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHccCCHHHHHHHHH
Confidence 11111111 57999999999999999887642221 11 135667888899998876655433
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.45 E-value=2.9e-07 Score=100.64 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=46.8
Q ss_pred hhcCCceeEEecCC-CCCCCCccccccC-ccccccCccceEEecCCcccccch-hhhccCCCcEEeecCcccccccchhh
Q 002132 596 FRESTSLRALDFWG-SYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIRKLPE-TLCELYNLEKLYITRCLYLEELPEGI 672 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~-~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i 672 (961)
+..+++|++|+|++ |. +..+| ..|+.|.+|++|+|++|.|+.+|. .|.+|++|++|+|++|. +..+|..+
T Consensus 27 l~~~~~L~~L~l~~~n~------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~ 99 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH------LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKT 99 (347)
T ss_dssp SCSCSCCSEEECCSCSS------CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTT
T ss_pred CCCCCCeeEEEccCCCC------CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHH
Confidence 55555666666654 54 55554 345566666666666666665533 34566666666666665 44555443
Q ss_pred hcccCCceeecCCcc
Q 002132 673 GKLINMKHLLNYRTD 687 (961)
Q Consensus 673 ~~L~~L~~L~l~~~~ 687 (961)
....+|++|++.+|.
T Consensus 100 ~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 VQGLSLQELVLSGNP 114 (347)
T ss_dssp TCSCCCCEEECCSSC
T ss_pred cccCCceEEEeeCCC
Confidence 333336666665553
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=1.4e-05 Score=88.90 Aligned_cols=324 Identities=13% Similarity=0.076 Sum_probs=182.5
Q ss_pred cccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCccc
Q 002132 564 VPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIR 642 (961)
Q Consensus 564 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~ 642 (961)
..+..|.+|+++.+..+- . .+...+|.+|..|+.++|..+ +..++ ..+..+..|+.+.+..+ ++
T Consensus 65 ~AF~~c~~L~~i~lp~~i-~------~I~~~aF~~c~~L~~i~lp~~-------l~~I~~~aF~~c~~L~~i~~p~~-l~ 129 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPSTV-R------EIGEFAFENCSKLEIINIPDS-------VKMIGRCTFSGCYALKSILLPLM-LK 129 (394)
T ss_dssp TTTTTCTTEEEEECCTTC-C------EECTTTTTTCTTCCEECCCTT-------CCEECTTTTTTCTTCCCCCCCTT-CC
T ss_pred HHhhCCCCceEEEeCCCc-c------CcchhHhhCCCCCcEEEeCCC-------ceEccchhhcccccchhhcccCc-ee
Confidence 456788889988886432 1 233456888899999988755 44443 34667778877766543 33
Q ss_pred ccc-hhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccc-cCCCCCCCCcCCceEeCCCCCcCCCc
Q 002132 643 KLP-ETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPV-GIGRLTGLRTLDEFHVIGGGGVDGRK 720 (961)
Q Consensus 643 ~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~ 720 (961)
.++ ..+.++..+..........+ -...+.++.+|+.+.+..+ ...++. .+..+.+|+.+.. ..+ .....
T Consensus 130 ~i~~~aF~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l----~~~-~~~I~ 200 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPEGVTVI--GDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKL----PRN-LKIIR 200 (394)
T ss_dssp EECTTTTTTCCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCC----CTT-CCEEC
T ss_pred eecceeeecccccccccCcccccc--chhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEc----CCC-ceEeC
Confidence 332 23444544444433332211 1234677888888888655 233443 3666777777662 211 11122
Q ss_pred ccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEE
Q 002132 721 ACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELE 800 (961)
Q Consensus 721 ~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 800 (961)
...+..+..|+.+.+...... .+. ....+.+|+.+.+..+... .-...+..+..|+.+.
T Consensus 201 ~~~F~~~~~L~~i~~~~~~~~-----i~~----~~~~~~~l~~i~ip~~~~~------------i~~~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 201 DYCFAECILLENMEFPNSLYY-----LGD----FALSKTGVKNIIIPDSFTE------------LGKSVFYGCTDLESIS 259 (394)
T ss_dssp TTTTTTCTTCCBCCCCTTCCE-----ECT----TTTTTCCCCEEEECTTCCE------------ECSSTTTTCSSCCEEE
T ss_pred chhhccccccceeecCCCceE-----eeh----hhcccCCCceEEECCCcee------------cccccccccccceeEE
Confidence 334556666666655222110 000 1223456677666421100 0012345667788888
Q ss_pred EeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccc
Q 002132 801 IRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISS 880 (961)
Q Consensus 801 l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~ 880 (961)
+..+...- -...+..+..|+.+.+....+. -..+..+.+|+.+.+..+ ++.++...+ ..+.+|+.+.|.+
T Consensus 260 ~~~~~~~i-~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~--i~~I~~~aF-----~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 260 IQNNKLRI-GGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS--VKFIGEEAF-----ESCTSLVSIDLPY 329 (394)
T ss_dssp ECCTTCEE-CSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT--CCEECTTTT-----TTCTTCCEECCCT
T ss_pred cCCCccee-eccccccccccceeccCceeec--cccccccccccccccccc--cceechhhh-----cCCCCCCEEEeCC
Confidence 76543221 2344556778888777654211 112667888888888653 677776544 4667888888854
Q ss_pred cccccccccccccccccccccccccceecccccccCcCCCC-CCCCCCCccEEEEcccccccccccCCCCcccceE
Q 002132 881 MLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPD-HIHQTTTLKELRIWACELLGKHYRGGTEKTGLKY 955 (961)
Q Consensus 881 ~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~ 955 (961)
.++.+. ...+..+.+|+.+.+..+ ++.++. .+.+|++|+.+++.++-.. .-..+..-++|+.
T Consensus 330 --~v~~I~-------~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~~~--~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 330 --LVEEIG-------KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKRLEQ--YRYDFEDTTKFKW 392 (394)
T ss_dssp --TCCEEC-------TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGGGGG--GGGGBCTTCEEEE
T ss_pred --cccEEh-------HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCCCEE--hhheecCCCCCcE
Confidence 233332 122446788998888653 666654 5678899999999654322 2223444555543
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.34 E-value=7.4e-06 Score=91.52 Aligned_cols=180 Identities=18% Similarity=0.176 Sum_probs=104.2
Q ss_pred CCceecccchH---HHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHH
Q 002132 182 EEEICGRVGER---NELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVA 258 (961)
Q Consensus 182 ~~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 258 (961)
-.+++|.+..+ ..+...+... ....+.|+|++|+||||||+.+++. .... ++.++......+-+
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~-----f~~l~a~~~~~~~i 91 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANAD-----VERISAVTSGVKEI 91 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCE-----EEEEETTTCCHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCC-----eEEEEeccCCHHHH
Confidence 34688988777 6677777632 4467899999999999999999984 2222 22222211111111
Q ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEE-Eccchh--hhh-h
Q 002132 259 KAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILV-TTRKKS--VAS-M 334 (961)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv-TtR~~~--~~~-~ 334 (961)
+.++... ......+++.+|++|+++.......+.+...+..+ ...+|. ||.+.. +.. .
T Consensus 92 r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 2221110 11112467899999999887655666777777652 233443 555543 111 1
Q ss_pred hccCCcceEEcCCCCHHHHHHHHHHHHcCCCCC---CChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 335 MGSTDTDIITVMELTEEECWSLFKRLAFFGPSI---NDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 335 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
... ..++.+.+++.++..+++.+.+...... ....-..+..+.|++.++|.+-.+..+
T Consensus 154 ~sR--~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSR--ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTT--EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCc--eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 122 2578999999999999998876431110 111122456778888899988755544
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.32 E-value=7.9e-07 Score=97.14 Aligned_cols=95 Identities=16% Similarity=0.053 Sum_probs=66.1
Q ss_pred EEecCCC-CCCCCccccccCccccccCccceEEecC-Ccccccc-hhhhccCCCcEEeecCcccccccchhhhcccCCce
Q 002132 604 ALDFWGS-YDVSPFWTLKIPRNIEKLVHLRYLNLSC-QNIRKLP-ETLCELYNLEKLYITRCLYLEELPEGIGKLINMKH 680 (961)
Q Consensus 604 ~L~L~~~-~~~~~~~~~~lp~~i~~L~~Lr~L~L~~-~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 680 (961)
.++++++ . +..+|. +..+.+|++|+|++ |.|+.+| ..|++|.+|++|+|++|.+....|..|.+|++|++
T Consensus 12 ~v~~~~~n~------l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGA------LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (347)
T ss_dssp CEECCSSCC------CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred EEEcCCCCC------CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence 3466666 5 667787 88888888888885 7888776 45778888888888888733333456678888888
Q ss_pred eecCCccccccccccCCCCCCCCcCC
Q 002132 681 LLNYRTDSLRYMPVGIGRLTGLRTLD 706 (961)
Q Consensus 681 L~l~~~~~~~~~p~~i~~L~~L~~L~ 706 (961)
|+|++|. +..+|..+.....|+.|.
T Consensus 85 L~l~~N~-l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 85 LNLSFNA-LESLSWKTVQGLSLQELV 109 (347)
T ss_dssp EECCSSC-CSCCCSTTTCSCCCCEEE
T ss_pred EeCCCCc-cceeCHHHcccCCceEEE
Confidence 8888875 455665543333376666
No 171
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=1.6e-06 Score=95.02 Aligned_cols=198 Identities=12% Similarity=0.022 Sum_probs=109.2
Q ss_pred CceecccchHHHHHHHH-hcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh----cCCe---------------
Q 002132 183 EEICGRVGERNELLSKL-LCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR----KFDK--------------- 242 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~--------------- 242 (961)
.+++|.+..++.+..++ ... ..+.+.|+|+.|+||||+|+.++....-.. .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~------~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR------DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT------CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46899999888888877 422 222389999999999999998877320000 0000
Q ss_pred -----EEEEEeCCcc-cHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCC
Q 002132 243 -----LLWVCVSDPF-EQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNG 316 (961)
Q Consensus 243 -----~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 316 (961)
.+.+..+... ......+++++.+.....- .... .+ ..+.+++-++|+|++...+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111100 0000122222222111000 0000 00 002346679999999887665666777777665
Q ss_pred CCCcEEEEEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHH
Q 002132 317 LHGSKILVTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIG 395 (961)
Q Consensus 317 ~~gs~iivTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 395 (961)
..+..+|++|.... +...+... ...+++.+++.++..+++.+.+...+-.-.. .+....|++.++|.+..+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQ-CLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTT-SEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhh-ceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 55677888776543 22212111 2679999999999999998876322111010 2456788899999987665544
Q ss_pred H
Q 002132 396 S 396 (961)
Q Consensus 396 ~ 396 (961)
.
T Consensus 238 ~ 238 (354)
T 1sxj_E 238 E 238 (354)
T ss_dssp T
T ss_pred H
Confidence 3
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.25 E-value=1.6e-05 Score=87.38 Aligned_cols=199 Identities=13% Similarity=0.071 Sum_probs=107.7
Q ss_pred CCceecccchHHHH---HHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEe----CCcccH
Q 002132 182 EEEICGRVGERNEL---LSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCV----SDPFEQ 254 (961)
Q Consensus 182 ~~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----s~~~~~ 254 (961)
-..++|++..++.+ ...+.... ...+.+.|+|++|+|||++|+.+++.. .... ..+.+.. +.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l--~~~~-~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDT-PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH--CSSC-CEEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh--cccC-Ccccccchhhhhcccch
Confidence 34799999887764 44444322 123578999999999999999999853 2211 1222221 122333
Q ss_pred HHHHHHHHHHcCC---------------------CC-------CC--CCCHHHHHHHHHHHh-----CCc----eEEEEE
Q 002132 255 FRVAKAIAEALGI---------------------PS-------SN--LGEFQSLLKLISESI-----TGK----RFLLVL 295 (961)
Q Consensus 255 ~~~~~~i~~~l~~---------------------~~-------~~--~~~~~~l~~~l~~~l-----~~k----r~LlVl 295 (961)
.+.+.+.+..... .. .. ......+...+.... .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 3444444333110 00 00 000122222222211 233 359999
Q ss_pred eCCCCCCccChhhhHHhhhCCCCCcEEEEEccc------------h-hhh-hhhccCCcceEEcCCCCHHHHHHHHHHHH
Q 002132 296 DDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRK------------K-SVA-SMMGSTDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 296 Ddv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~------------~-~~~-~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
|+++.........+...+...... .++++|.. . .+. ..... ...+.+.+++.++..+++.+.+
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR--~~~i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR--LLIVSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT--EEEEEECCCCHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh--ccEEEecCCCHHHHHHHHHHHH
Confidence 999887655566666666554333 34444431 1 111 11111 1458999999999999999876
Q ss_pred cCCCCCCChhhHHHHHHHHHhhcC-CCchhHHHH
Q 002132 362 FFGPSINDCEKLEQIGRRIAGKFK-GLPLAAKTI 394 (961)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~i~~~c~-G~PLai~~~ 394 (961)
..... . -..+..+.|++.+. |.|..+..+
T Consensus 273 ~~~~~-~---~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 273 EEEDV-E---MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HHTTC-C---BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHcCC-C---CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 43221 1 11345677888887 777655444
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.23 E-value=7.1e-06 Score=88.46 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=106.8
Q ss_pred CCceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 182 EEEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
-.+++|.+..++.+..++.... ...++.+.|++|+|||++|+.+++.. . ..++.++.+.. .. ..++.+
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~-~~-~~i~~~ 92 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDC-KI-DFVRGP 92 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTC-CH-HHHHTH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEccccc-CH-HHHHHH
Confidence 3578999999999999997432 33567888889999999999998842 1 23455554432 11 122221
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCC-ccChhhhHHhhhCCCCCcEEEEEccchhh-hhhhccCC
Q 002132 262 AEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGD-CIKWEPFYLCLKNGLHGSKILVTTRKKSV-ASMMGSTD 339 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtR~~~~-~~~~~~~~ 339 (961)
+...... ....+++-+||+||++... ....+.+...+.....+.++|+||....- ...+.. .
T Consensus 93 ~~~~~~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s-R 156 (324)
T 3u61_B 93 LTNFASA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS-R 156 (324)
T ss_dssp HHHHHHB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH-H
T ss_pred HHHHHhh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh-h
Confidence 1111000 0012468899999998765 44555666666554456778888776431 111111 1
Q ss_pred cceEEcCCCCHHHHHHHH-------HHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 340 TDIITVMELTEEECWSLF-------KRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 340 ~~~~~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
...+.+.+++.++-.+++ ...+...+. ...+ .+....|++.++|.+..+...
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTHHHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHHHHHH
Confidence 257999999988844332 222211111 1111 256778888898887654433
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.23 E-value=4.5e-06 Score=93.54 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=97.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcC--CeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKF--DKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
...+.|+|++|+||||||+.+++. ....+ ..+++++.+ .+..++...+... ... .+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CHH----HHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cHH----HHHHHhc
Confidence 567899999999999999999985 33333 235555443 2344444443221 111 2333344
Q ss_pred CceEEEEEeCCCCCCc--cChhhhHHhhhC-CCCCcEEEEEccchh---------hhhhhccCCcceEEcCCCCHHHHHH
Q 002132 288 GKRFLLVLDDVWDGDC--IKWEPFYLCLKN-GLHGSKILVTTRKKS---------VASMMGSTDTDIITVMELTEEECWS 355 (961)
Q Consensus 288 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~~~l~~L~~~~~~~ 355 (961)
.+.-+|++||++.... ..-+.+...+.. ...|..||+||.... +...+... ..+.+.+++.++..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g--~~i~l~~p~~e~r~~ 270 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG--LVAKLEPPDEETRKS 270 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS--BCCBCCCCCHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC--eEEEeCCCCHHHHHH
Confidence 3567999999976532 122334444322 234678888887632 22223322 578999999999999
Q ss_pred HHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 356 LFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 356 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
++.+.+...+- ..+ .++...|++.+.|.+-.+..+
T Consensus 271 iL~~~~~~~~~-~i~---~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 271 IARKMLEIEHG-ELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHHHTC-CCC---TTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 99887642111 111 234667888899988655433
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.23 E-value=1.1e-05 Score=85.08 Aligned_cols=186 Identities=17% Similarity=0.092 Sum_probs=101.0
Q ss_pred CCceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccH
Q 002132 182 EEEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQ 254 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 254 (961)
-.+++|.+..++++.+.+...... .-...+.+.|+|++|+|||+||+.+++.. .. ..+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~---~~~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NA---TFIRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TC---EEEEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CC---CEEEEehHHHHH-
Confidence 456899999999998877532000 00123458899999999999999998842 22 223333222110
Q ss_pred HHHHHHHHHHcCCCCCCCCCH-HHHHHHHHHHhCCceEEEEEeCCCCC-----------CccChhhhHHhhh-----CCC
Q 002132 255 FRVAKAIAEALGIPSSNLGEF-QSLLKLISESITGKRFLLVLDDVWDG-----------DCIKWEPFYLCLK-----NGL 317 (961)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~-~~l~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l~-----~~~ 317 (961)
. ..... ..+...+......+..+|+|||++.. +......+...+. ...
T Consensus 90 -------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 -------------K--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------C--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------h--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 0 01111 12222233333456689999999542 1111122222222 123
Q ss_pred CCcEEEEEccchhhhh-hhcc--CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCC-CchhHHH
Q 002132 318 HGSKILVTTRKKSVAS-MMGS--TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKG-LPLAAKT 393 (961)
Q Consensus 318 ~gs~iivTtR~~~~~~-~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~ 393 (961)
.+..||.||....... .... .-...+.+.+.+.++..+++...+..... ..... ...+++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 4567777887553221 1111 11146899999999999999888643221 11112 3566777776 4434443
No 176
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.21 E-value=1.3e-05 Score=86.61 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=105.0
Q ss_pred cchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhH--------------------hcCCeEEEEEe
Q 002132 189 VGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK--------------------RKFDKLLWVCV 248 (961)
Q Consensus 189 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~ 248 (961)
++..+.+...+.... -...+.++|+.|+|||++|+.+++...-. .++| ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 344566666665322 23568899999999999999988743111 0122 223322
Q ss_pred CCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH----hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEE
Q 002132 249 SDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISES----ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILV 324 (961)
Q Consensus 249 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 324 (961)
.. .......+++.+.+... ..+++-++|+|+++..+....+.+...+.....++.+|+
T Consensus 82 ~~------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EK------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CT------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cc------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 10 00112223222222211 135678999999988766666778888877666777777
Q ss_pred Eccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 325 TTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 325 TtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
+|.+.. +...+... ...+.+.++++++..+++.+.. . -. .+.+..+++.++|.|..+..+
T Consensus 144 ~t~~~~~l~~ti~SR-c~~~~~~~~~~~~~~~~L~~~~----~-~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 144 ATREPERLLATLRSR-CRLHYLAPPPEQYAVTWLSREV----T-MS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EESCGGGSCHHHHTT-SEEEECCCCCHHHHHHHHHHHC----C-CC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred EeCChHhCcHHHhhc-ceeeeCCCCCHHHHHHHHHHhc----C-CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 776653 22222211 2679999999999999998764 1 11 244578899999999766443
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.20 E-value=2.9e-05 Score=80.79 Aligned_cols=189 Identities=13% Similarity=0.060 Sum_probs=98.6
Q ss_pred CceecccchHHHHHHHHh---cCCcc---cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHH
Q 002132 183 EEICGRVGERNELLSKLL---CESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFR 256 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (961)
.+++|.+..++.+.+++. ....- .-...+.+.|+|++|+|||++|+.+++.. .. ..+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~---~~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QV---PFLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TC---CEEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEechHHHHhh--
Confidence 468898888777765543 21100 00233457899999999999999999842 22 2344444432110
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC------------CccChh---hhHHhhhC--CCCC
Q 002132 257 VAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDG------------DCIKWE---PFYLCLKN--GLHG 319 (961)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~------------~~~~~~---~l~~~l~~--~~~g 319 (961)
........+...+.........+|++||++.. ...... .+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 00011122222333333355789999999764 111112 22222222 1234
Q ss_pred cEEEEEccchhhh-hhhcc--CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch-hHHHH
Q 002132 320 SKILVTTRKKSVA-SMMGS--TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL-AAKTI 394 (961)
Q Consensus 320 s~iivTtR~~~~~-~~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~ 394 (961)
..||.||...... ..... .-...+.+...+.++..+++.+.+..... .. ........+++.+.|.+- .+..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~--~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQ--SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CB--THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-Cc--chhhHHHHHHHHCCCCCHHHHHHH
Confidence 5666666554321 11111 11156889999999999999887643221 11 112234678888888754 44443
No 178
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.15 E-value=2.1e-07 Score=102.07 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=61.1
Q ss_pred CCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccc-cccCccceEEecCCcccc-----
Q 002132 570 KRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNI-EKLVHLRYLNLSCQNIRK----- 643 (961)
Q Consensus 570 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i-~~L~~Lr~L~L~~~~i~~----- 643 (961)
++|+.|.+.++.+. ......+...+++|+.|+|++|. +++.....+...+ ...++|++|+|++|.|+.
T Consensus 101 ~~L~~L~Ls~n~l~-----~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 174 (372)
T 3un9_A 101 HALDEVNLASCQLD-----PAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAV 174 (372)
T ss_dssp SCEEEEECTTCCCC-----HHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHH
T ss_pred CCceEEEecCCCCC-----HHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHH
Confidence 56777777666532 22233334445567777777775 1111111122222 234567777777776652
Q ss_pred cchhhhccCCCcEEeecCcccc----cccchhhhcccCCceeecCCcc
Q 002132 644 LPETLCELYNLEKLYITRCLYL----EELPEGIGKLINMKHLLNYRTD 687 (961)
Q Consensus 644 Lp~~i~~L~~L~~L~L~~~~~l----~~lp~~i~~L~~L~~L~l~~~~ 687 (961)
++..+..+++|++|+|++|... ..++..+...++|++|++++|.
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 4555566677777777777621 1234445566677777777764
No 179
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.13 E-value=1.9e-05 Score=87.64 Aligned_cols=316 Identities=12% Similarity=0.065 Sum_probs=177.2
Q ss_pred cceeEEEEEeccccc-cccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-cc
Q 002132 547 EKVRHLMLIIGREAS-FRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP-RN 624 (961)
Q Consensus 547 ~~~r~lsl~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~ 624 (961)
.+++.+.+..+ ... ....+..|.+|+++.+.++-. .+....|..+..|+.+.+..+ +..+. ..
T Consensus 71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~-------~I~~~aF~~c~~L~~i~~p~~-------l~~i~~~a 135 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVK-------MIGRCTFSGCYALKSILLPLM-------LKSIGVEA 135 (394)
T ss_dssp TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCC-------EECTTTTTTCTTCCCCCCCTT-------CCEECTTT
T ss_pred CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCce-------EccchhhcccccchhhcccCc-------eeeeccee
Confidence 34666665432 221 234678899999999865421 223445888899988877655 33332 23
Q ss_pred ccccCccceEEecCCccccc-chhhhccCCCcEEeecCcccccccch-hhhcccCCceeecCCcccccccc-ccCCCCCC
Q 002132 625 IEKLVHLRYLNLSCQNIRKL-PETLCELYNLEKLYITRCLYLEELPE-GIGKLINMKHLLNYRTDSLRYMP-VGIGRLTG 701 (961)
Q Consensus 625 i~~L~~Lr~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~ 701 (961)
+..+..+...... .+..+ ...+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..++ ..+..+..
T Consensus 136 F~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 136 FKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTT
T ss_pred eecccccccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccc
Confidence 4444333322221 22222 345778889999988764 334443 4677888988888765 33333 34666777
Q ss_pred CCcCCceEeCCCCCcCCCcccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcc
Q 002132 702 LRTLDEFHVIGGGGVDGRKACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNE 781 (961)
Q Consensus 702 L~~L~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 781 (961)
|+.+.. ..+.. ..........+|+.+.+.. .+. ......+..+..|+.+.+..+...
T Consensus 210 L~~i~~----~~~~~--~i~~~~~~~~~l~~i~ip~-----~~~---~i~~~~f~~~~~l~~~~~~~~~~~--------- 266 (394)
T 4fs7_A 210 LENMEF----PNSLY--YLGDFALSKTGVKNIIIPD-----SFT---ELGKSVFYGCTDLESISIQNNKLR--------- 266 (394)
T ss_dssp CCBCCC----CTTCC--EECTTTTTTCCCCEEEECT-----TCC---EECSSTTTTCSSCCEEEECCTTCE---------
T ss_pred cceeec----CCCce--EeehhhcccCCCceEEECC-----Cce---ecccccccccccceeEEcCCCcce---------
Confidence 776652 11100 0011122223444333211 000 111124556777888777543211
Q ss_pred hHHHHHhhCCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCCC--CCCccccceeecccccCceEeCC
Q 002132 782 DDQLLLEALQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPP--LGKLQSLEKLSLTIMRSVKRVGD 859 (961)
Q Consensus 782 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~ 859 (961)
.....+..++.++.+.+....+. ...+..+.+|+.+.+.++ ...++. +.++.+|+.+.|.. .++.++.
T Consensus 267 ---i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~ 336 (394)
T 4fs7_A 267 ---IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGK 336 (394)
T ss_dssp ---ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECT
T ss_pred ---eeccccccccccceeccCceeec---cccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhH
Confidence 00123555677777766543321 223457888999988765 233333 77888999999864 3777876
Q ss_pred cccCCcccCcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCCCCCCCCCCccEE
Q 002132 860 ECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPDHIHQTTTLKEL 932 (961)
Q Consensus 860 ~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~~~~~l~~L~~L 932 (961)
..+ .++.+|+.+.|... ++.+.. ..+..+++|+++++... ++.+...+.++++|+.+
T Consensus 337 ~aF-----~~c~~L~~i~lp~~--l~~I~~-------~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 337 RSF-----RGCTSLSNINFPLS--LRKIGA-------NAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTT-----TTCTTCCEECCCTT--CCEECT-------TTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred Hhc-----cCCCCCCEEEECcc--ccEehH-------HHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 544 46778888888642 443322 22446788998888653 45555566777777765
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.6e-05 Score=91.30 Aligned_cols=197 Identities=16% Similarity=0.150 Sum_probs=109.6
Q ss_pred CCceecccchHHHHHHHHhcCCcc-----------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC
Q 002132 182 EEEICGRVGERNELLSKLLCESSE-----------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD 250 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 250 (961)
-.+++|++..++++..++...... ..+..+.+.|+|++|+||||+|+.+++.. .+ .++.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCC
Confidence 356999999999999998752100 00134688999999999999999999843 12 344555555
Q ss_pred cccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccC---hhhhHHhhhCCCCCcEEEEEcc
Q 002132 251 PFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIK---WEPFYLCLKNGLHGSKILVTTR 327 (961)
Q Consensus 251 ~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~iivTtR 327 (961)
..... +....+........-..-...... .....+++.+||+|+++...... +..+...+... +..||+++.
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICN 187 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEES
T ss_pred cchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEc
Confidence 44332 222222221111000000000000 00123668899999997653222 34455555443 234555554
Q ss_pred chh---hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch-hHHHH
Q 002132 328 KKS---VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL-AAKTI 394 (961)
Q Consensus 328 ~~~---~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~ 394 (961)
... +...... ...+.+.+++.++..+++...+...+..-. .+....|++.++|.+- ++..+
T Consensus 188 ~~~~~~l~~l~~r--~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 188 ERNLPKMRPFDRV--CLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CTTSSTTGGGTTT--SEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCCccchhhHhc--eEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 322 2221111 257899999999999998876643221111 2346788889999554 44444
No 181
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.11 E-value=4.3e-06 Score=81.92 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=38.2
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998753 2345689999999999999999885
No 182
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.10 E-value=4.1e-05 Score=82.38 Aligned_cols=156 Identities=18% Similarity=0.146 Sum_probs=88.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
...+.|+|++|+||||||+.+++.. ...-..+++++.. .+...+...+.. ...... ...+ .+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~~~------~~~~~~~~~~~~-----~~~~~~----~~~~-~~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSAD------DFAQAMVEHLKK-----GTINEF----RNMY-KS 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEHH------HHHHHHHHHHHH-----TCHHHH----HHHH-HT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEHH------HHHHHHHHHHHc-----CcHHHH----HHHh-cC
Confidence 4568899999999999999999853 2222235565543 233333333311 111221 2222 23
Q ss_pred eEEEEEeCCCCCCc--cChhhhHHhhhC-CCCCcEEEEEccchh---------hhhhhccCCcceEEcCCCCHHHHHHHH
Q 002132 290 RFLLVLDDVWDGDC--IKWEPFYLCLKN-GLHGSKILVTTRKKS---------VASMMGSTDTDIITVMELTEEECWSLF 357 (961)
Q Consensus 290 r~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~~~---------~~~~~~~~~~~~~~l~~L~~~~~~~lf 357 (961)
.-+|++||++.... .....+...+.. ...+..||+||.... +...+... .++.+++ +.++..+++
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~--~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG--ILVEIEL-DNKTRFKII 175 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS--EEEECCC-CHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc--eEEEeCC-CHHHHHHHH
Confidence 56999999976532 122334433322 123557888876432 22222222 5689999 999999999
Q ss_pred HHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhH
Q 002132 358 KRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAA 391 (961)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai 391 (961)
...+..... .-+ .+....|++.+ |..-.+
T Consensus 176 ~~~~~~~~~-~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 176 KEKLKEFNL-ELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHTTC-CCC---HHHHHHHHHHC-SSHHHH
T ss_pred HHHHHhcCC-CCC---HHHHHHHHHhC-CCHHHH
Confidence 887743221 111 34567788888 776543
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.10 E-value=2.8e-05 Score=83.16 Aligned_cols=163 Identities=13% Similarity=0.073 Sum_probs=90.7
Q ss_pred ceecccchHHHHHHHHhcCC---------cccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccH
Q 002132 184 EICGRVGERNELLSKLLCES---------SEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQ 254 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 254 (961)
+++|.+..++.+.+++.... -........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47888888887776654210 000123456899999999999999998885422222111123333211
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC---------CccChhhhHHhhhCCCCCcEEEEE
Q 002132 255 FRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDG---------DCIKWEPFYLCLKNGLHGSKILVT 325 (961)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivT 325 (961)
.+..... ......+...+... +.-+|++|+++.. .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0111000 01112222222222 2349999999743 333345566666666666788888
Q ss_pred ccchhhhhh------hccCCcceEEcCCCCHHHHHHHHHHHHc
Q 002132 326 TRKKSVASM------MGSTDTDIITVMELTEEECWSLFKRLAF 362 (961)
Q Consensus 326 tR~~~~~~~------~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 362 (961)
|........ +...-...+.+.+++.++..+++.+.+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 765432111 1111115799999999999999988764
No 184
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.08 E-value=8e-07 Score=97.46 Aligned_cols=130 Identities=14% Similarity=0.180 Sum_probs=83.5
Q ss_pred CCCccEEEecCCCCCCCccchhhhHHHhh-cCCceeEEecCCCCCCCCccccc--cCccccccCccceEEecCCccccc-
Q 002132 569 VKRIRSLLIDNSRTSCSYFNGEILEELFR-ESTSLRALDFWGSYDVSPFWTLK--IPRNIEKLVHLRYLNLSCQNIRKL- 644 (961)
Q Consensus 569 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~~~~~~~~~~--lp~~i~~L~~Lr~L~L~~~~i~~L- 644 (961)
.+.|+.|.+.++.+... ....+...+. ..+.|++|+|++|. +.. +......+.+|++|+|++|.++..
T Consensus 71 ~~~L~~L~Ls~n~l~~~--~~~~l~~~L~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~ 142 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPV--KCTVVAAVLGSGRHALDEVNLASCQ------LDPAGLRTLLPVFLRARKLGLQLNSLGPEA 142 (372)
T ss_dssp HTTCCEEECTTSCCCHH--HHHHHHHHHSSCSSCEEEEECTTCC------CCHHHHHHTHHHHHTEEEEECCSSCCCHHH
T ss_pred HhhCCEEEecCCCCCHH--HHHHHHHHHhhCCCCceEEEecCCC------CCHHHHHHHHHHHHhccHhhcCCCCCCHHH
Confidence 46788899888775321 1122333333 34799999999997 432 222233567899999999998733
Q ss_pred ----chhh-hccCCCcEEeecCcccc----cccchhhhcccCCceeecCCccccc----cccccCCCCCCCCcCC
Q 002132 645 ----PETL-CELYNLEKLYITRCLYL----EELPEGIGKLINMKHLLNYRTDSLR----YMPVGIGRLTGLRTLD 706 (961)
Q Consensus 645 ----p~~i-~~L~~L~~L~L~~~~~l----~~lp~~i~~L~~L~~L~l~~~~~~~----~~p~~i~~L~~L~~L~ 706 (961)
...+ ...++|++|+|++|... ..++..+..+++|++|++++|.... .++..+...++|++|+
T Consensus 143 ~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 143 CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE
T ss_pred HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE
Confidence 2223 24688999999999832 2355666788999999999996322 1233344455555555
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=2.1e-05 Score=85.32 Aligned_cols=177 Identities=11% Similarity=0.050 Sum_probs=106.9
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCC-eEEEEEeCCcccHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFD-KLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i 261 (961)
.+++|.+..++.+...+... +.+.+.++|+.|+||||+|+.+++... ...+. .+..++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 45788888888888887632 233389999999999999999988531 11111 122222222111
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHH------hCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hhhh
Q 002132 262 AEALGIPSSNLGEFQSLLKLISES------ITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VASM 334 (961)
Q Consensus 262 ~~~l~~~~~~~~~~~~l~~~l~~~------l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~~~ 334 (961)
.+.+.+.+... ..+.+-++|+|+++.......+.+...+.......++|++|.... +...
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 12222222211 123467899999977655556667777766556667777765432 1111
Q ss_pred hccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHH
Q 002132 335 MGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAK 392 (961)
Q Consensus 335 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~ 392 (961)
.... ...+.+.+++.++..+.+.+.+-...- .-. .+..+.|++.++|.+--+.
T Consensus 157 i~sR-~~~~~~~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 157 LLSQ-CTRFRFQPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHTT-SEEEECCCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHHHH
T ss_pred HHhh-ceeEeccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHH
Confidence 1111 257899999999999988876632221 111 3456788899999887443
No 186
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.07 E-value=3.7e-05 Score=80.37 Aligned_cols=174 Identities=20% Similarity=0.178 Sum_probs=92.2
Q ss_pred CceecccchHHHHHH-------HHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLS-------KLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
..++|....+++++. .+.... ....+.+.|+|++|+|||+||+.+++.. . .. .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~~--~--~~-~~~i~~~~~---- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEES--N--FP-FIKICSPDK---- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHHH--T--CS-EEEEECGGG----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHHh--C--CC-EEEEeCHHH----
Confidence 357787777666665 232111 2356788999999999999999999842 2 22 222332221
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC------Cc---cCh-hhhHHhhhC---CCCCcEE
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDG------DC---IKW-EPFYLCLKN---GLHGSKI 322 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~------~~---~~~-~~l~~~l~~---~~~gs~i 322 (961)
+... ........+...+......+..+|+|||++.. .. ..+ ..+...+.. ......|
T Consensus 101 ---------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ---------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000 00000122233344444567899999998542 11 111 222222221 2223446
Q ss_pred EEEccchhhhhh--hccCCcceEEcCCCCH-HHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCC
Q 002132 323 LVTTRKKSVASM--MGSTDTDIITVMELTE-EECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGL 387 (961)
Q Consensus 323 ivTtR~~~~~~~--~~~~~~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 387 (961)
|.||........ ....-...+.+++++. ++..+++.+.. . -. .+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCC
Confidence 677776643332 1111125688999988 66666665531 1 11 33466788888874
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.01 E-value=6.8e-06 Score=76.64 Aligned_cols=115 Identities=14% Similarity=0.031 Sum_probs=70.6
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHH
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAE 263 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 263 (961)
+++|+...+.++.+.+..... ...-|.|+|.+|+|||++|+.+++... +... ..+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~-~~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGR-NAQG-EFV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSST-TTTS-CCE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCC-ccCC-CEE-EECCCCCcc---------
Confidence 578999999999888764332 123468999999999999999988421 1111 223 665543221
Q ss_pred HcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccch
Q 002132 264 ALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKK 329 (961)
Q Consensus 264 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 329 (961)
..... .+... ..-.|++|+++.........+...+.......+||.||...
T Consensus 66 ---------~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ---------PQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ---------SCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ---------hhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 11111 11111 22468999998876555566777775555566788777643
No 188
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.94 E-value=2.8e-06 Score=92.26 Aligned_cols=15 Identities=7% Similarity=-0.082 Sum_probs=10.2
Q ss_pred hhcCCceeEEecCCC
Q 002132 596 FRESTSLRALDFWGS 610 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~ 610 (961)
..++++|+.|.+...
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 446778888877654
No 189
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.91 E-value=5e-06 Score=90.23 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=72.0
Q ss_pred cccCCCccEEEecCCCCCCC---ccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc
Q 002132 566 ICRVKRIRSLLIDNSRTSCS---YFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR 642 (961)
Q Consensus 566 ~~~~~~Lr~L~l~~~~~~~~---~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~ 642 (961)
...+++|++|.+.+...... +.....+..++..+++|+.|+|++|.. ..++. + .+++|++|+|..+.+.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~------l~l~~-~-~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN------LSIGK-K-PRPNLKSLEIISGGLP 206 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT------CBCCS-C-BCTTCSEEEEECSBCC
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC------ceecc-c-cCCCCcEEEEecCCCC
Confidence 45677888888865432110 011112456678899999999998742 23444 3 3889999999988765
Q ss_pred c-cchhhh--ccCCCcEEeecCccc-------ccccchhh--hcccCCceeecCCccc
Q 002132 643 K-LPETLC--ELYNLEKLYITRCLY-------LEELPEGI--GKLINMKHLLNYRTDS 688 (961)
Q Consensus 643 ~-Lp~~i~--~L~~L~~L~L~~~~~-------l~~lp~~i--~~L~~L~~L~l~~~~~ 688 (961)
. -...++ ++++|++|+|+.+.. +..+...+ ..+++|++|++.+|..
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 2 122343 789999999864211 11122222 2478899998887754
No 190
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.90 E-value=0.00015 Score=77.73 Aligned_cols=189 Identities=16% Similarity=0.125 Sum_probs=103.1
Q ss_pred CCceecccchHHHHHHHHhcCC------cccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 182 EEEICGRVGERNELLSKLLCES------SEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
-.+++|.+..++.+.+.+.... .......+-+.++|++|+|||+||+.+++. .... .+.++.+
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~v~~~------ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS------ 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCE---EEEEEHH------
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCC---EEEEchH------
Confidence 3568999999999988773110 000123356889999999999999999984 2222 2333321
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHH-HHHhCCceEEEEEeCCCCCCcc-----------ChhhhHHhhh---CCCCCc
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLI-SESITGKRFLLVLDDVWDGDCI-----------KWEPFYLCLK---NGLHGS 320 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs 320 (961)
++.. . -..+.+...+.+ ...-..+..+|+||+++..... ....+...+. ....+.
T Consensus 86 ~l~~----~------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DLVS----K------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HHHT----T------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HHhh----c------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 1110 0 001122222222 2223356789999999753210 0233333332 223455
Q ss_pred EEEEEccchhhh-hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCC-CchhHHHHH
Q 002132 321 KILVTTRKKSVA-SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKG-LPLAAKTIG 395 (961)
Q Consensus 321 ~iivTtR~~~~~-~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~~~ 395 (961)
.||.||...... ..+...-...+.+...+.++-.+++...+........ ......|++.+.| .+-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 666677654321 1111111146788889999999999988743221111 2345678888887 344444443
No 191
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=9.3e-06 Score=79.27 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=77.4
Q ss_pred ccccCCCccEEEecCC-CCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccc
Q 002132 565 PICRVKRIRSLLIDNS-RTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRK 643 (961)
Q Consensus 565 ~~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~ 643 (961)
.+...+.|++|.+.++ .+... ....+...+...+.|++|+|++|. +++.....+...+...+.|++|+|++|.|+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~--g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVP--TLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHH--HHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHhcCCCCCEEEecCCCCCCHH--HHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4456778888888876 54321 123344456677888888888886 2221122344556666788888888888773
Q ss_pred -----cchhhhccCCCcEEee--cCccccc----ccchhhhcccCCceeecCCcc
Q 002132 644 -----LPETLCELYNLEKLYI--TRCLYLE----ELPEGIGKLINMKHLLNYRTD 687 (961)
Q Consensus 644 -----Lp~~i~~L~~L~~L~L--~~~~~l~----~lp~~i~~L~~L~~L~l~~~~ 687 (961)
+...+.....|++|+| ++|..-. .+...+...++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5666777788888888 6676322 134445566788888888774
No 192
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.89 E-value=1.9e-05 Score=76.78 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=65.6
Q ss_pred cchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCC
Q 002132 189 VGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIP 268 (961)
Q Consensus 189 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (961)
...++.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+.......
T Consensus 20 ~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCc
Confidence 3444555555543321 134678999999999999999999854222222 334443 344444444433221
Q ss_pred CCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChh--hhHHhhhCC-CCCcEEEEEccch
Q 002132 269 SSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWE--PFYLCLKNG-LHGSKILVTTRKK 329 (961)
Q Consensus 269 ~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 329 (961)
... ...+.+ . +.-+|||||++......|. .+...+... ..|..||+||...
T Consensus 90 ~~~-----~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 90 KDT-----KFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CCS-----HHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hHH-----HHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 122222 1 3568999999853333443 233333322 2467788888754
No 193
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.88 E-value=9.1e-05 Score=78.15 Aligned_cols=148 Identities=16% Similarity=0.047 Sum_probs=95.4
Q ss_pred cccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchh-hH-hcCCeEEEEEeCC-cccHHHHHHHHHH
Q 002132 187 GRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVE-VK-RKFDKLLWVCVSD-PFEQFRVAKAIAE 263 (961)
Q Consensus 187 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~-~~f~~~~wv~~s~-~~~~~~~~~~i~~ 263 (961)
|-++.++.+...+... +.+.+.++|+.|+||||+|+.+++... .. .+.+ +.++..+. ...++. .+++.+
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHH
Confidence 3455666777777532 357899999999999999999987411 00 1233 34554432 222222 233444
Q ss_pred HcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh-hhhhhccCCcce
Q 002132 264 ALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS-VASMMGSTDTDI 342 (961)
Q Consensus 264 ~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-~~~~~~~~~~~~ 342 (961)
.+...+ ..+++-++|+|+++..+....+.+...+......+.+|++|.++. +...+.. +.
T Consensus 73 ~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S---R~ 133 (305)
T 2gno_A 73 FLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS---RV 133 (305)
T ss_dssp HHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT---TS
T ss_pred HHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc---ee
Confidence 432211 125577899999988776777888888887777788887775542 3333332 28
Q ss_pred EEcCCCCHHHHHHHHHHHH
Q 002132 343 ITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 343 ~~l~~L~~~~~~~lf~~~~ 361 (961)
+++.++++++..+.+.+..
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999998876
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.87 E-value=0.00013 Score=79.45 Aligned_cols=189 Identities=10% Similarity=0.038 Sum_probs=102.7
Q ss_pred CceecccchHHHHHHHHhcC----Cc--ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHH
Q 002132 183 EEICGRVGERNELLSKLLCE----SS--EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFR 256 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (961)
.+++|.+..++.+.+.+... .- ......+.|.|+|++|+|||+||+.+++.. .. ..+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhc---
Confidence 46899999999998877421 00 001234568899999999999999998842 21 234454432211
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHH-HHHhCCceEEEEEeCCCCCCc-----------cChhhhHHhhhCC----CCCc
Q 002132 257 VAKAIAEALGIPSSNLGEFQSLLKLI-SESITGKRFLLVLDDVWDGDC-----------IKWEPFYLCLKNG----LHGS 320 (961)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~----~~gs 320 (961)
. -........+.+ ...-..+..+|+||+++.... .....+...+... ..+.
T Consensus 156 -----------~--~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------K--WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------S--STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------c--ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 001111222222 222235678999999953210 0122333333321 2344
Q ss_pred EEEEEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCC-CchhHHHHHH
Q 002132 321 KILVTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKG-LPLAAKTIGS 396 (961)
Q Consensus 321 ~iivTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~~~~ 396 (961)
.||.||.... +.......-...+.+...+.++..+++...+......- ..+....|++.+.| .+-.+..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL----SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC----CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc----cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5555665432 21111111114678889999999999987764322111 13456788888888 4555555443
No 195
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.85 E-value=0.00011 Score=79.74 Aligned_cols=189 Identities=15% Similarity=0.102 Sum_probs=100.7
Q ss_pred CceecccchHHHHHHHHhcC----Cc--ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHH
Q 002132 183 EEICGRVGERNELLSKLLCE----SS--EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFR 256 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (961)
.+++|.+..++.+.+.+... .- ......+-|.|+|++|+|||+||+.+++.. .. ..+.++.+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~---~~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NS---TFFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TC---EEEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CC---CEEEeeHH------H
Confidence 46899999999998876321 00 001123457899999999999999999843 22 22333222 1
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCcc-----------ChhhhHHhhhC---CCCCcEE
Q 002132 257 VAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCI-----------KWEPFYLCLKN---GLHGSKI 322 (961)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~gs~i 322 (961)
+.. .. .. .....+...+...-..+..+|+||+++..... ....+...+.. ...+..|
T Consensus 120 l~~----~~----~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LVS----KW----MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HHS----CC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hhh----hh----cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 111 10 00 11112222222233456889999999754211 01223333321 2234556
Q ss_pred EEEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCC-CchhHHHHH
Q 002132 323 LVTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKG-LPLAAKTIG 395 (961)
Q Consensus 323 ivTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~~~ 395 (961)
|.||.... +...+...-...+.+...+.++-.+++...+......-. ......|++.+.| .+-.|..+.
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 65665442 111111111156789999999999999887643221111 2345678888888 444454443
No 196
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.84 E-value=0.00031 Score=75.10 Aligned_cols=192 Identities=15% Similarity=0.081 Sum_probs=101.6
Q ss_pred CCceecccchHHHHHHHHhcC----Cc--ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 182 EEEICGRVGERNELLSKLLCE----SS--EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
-.+++|.+..++.+.+.+... .- ......+-|.++|++|+|||+||+.+++... . ...+.++.+.-.+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~---~~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-N---STFFSISSSDLVS-- 84 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-S---CEEEEEECCSSCC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-C---CcEEEEEhHHHHh--
Confidence 346889998888887766311 00 0011235688999999999999999998420 1 1223344332110
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCc------cC-h----hhhHHhhhC---CCCCcE
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDC------IK-W----EPFYLCLKN---GLHGSK 321 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~------~~-~----~~l~~~l~~---~~~gs~ 321 (961)
... ......+...+...-..++.+|++|+++.... .. . ..+...+.. ...+..
T Consensus 85 ------------~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 ------------KWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ------------SSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ------------hhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 000 11112222222223345678999999975311 01 1 122222222 123445
Q ss_pred EEEEccchhh-hhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCC-chhHHHHHH
Q 002132 322 ILVTTRKKSV-ASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGL-PLAAKTIGS 396 (961)
Q Consensus 322 iivTtR~~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-PLai~~~~~ 396 (961)
||.||..... ...+...-...+.+...+.++..+++..........-. ......|++.+.|. +-.|..+..
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5556654321 11111111156888889999999999887633221111 24467888899886 444554443
No 197
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.81 E-value=4e-05 Score=76.12 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=63.5
Q ss_pred hHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC
Q 002132 191 ERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS 270 (961)
Q Consensus 191 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 270 (961)
.++.+..++..... ....+.+.|+|++|+|||+||+.+++.. ......++|++++ .+...+......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 44555566554321 1122678899999999999999999853 3344456777553 344444332211
Q ss_pred CCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhh--hHH-hhhCC-CCCcEEEEEccch
Q 002132 271 NLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEP--FYL-CLKNG-LHGSKILVTTRKK 329 (961)
Q Consensus 271 ~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~iivTtR~~ 329 (961)
.........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||...
T Consensus 104 --~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 --QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp --CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred --chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 112233333322 2399999997643334432 332 22221 2355788888753
No 198
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.80 E-value=7.4e-06 Score=79.98 Aligned_cols=99 Identities=11% Similarity=0.075 Sum_probs=75.2
Q ss_pred hhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc-----ccchhhhccCCCcEEeecCccc
Q 002132 590 EILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR-----KLPETLCELYNLEKLYITRCLY 664 (961)
Q Consensus 590 ~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-----~Lp~~i~~L~~L~~L~L~~~~~ 664 (961)
..+..++...+.|++|+|++|..+++.....+...+...++|++|+|++|.|. .+...+...++|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 44566788899999999999933333333446667778899999999999987 3566677789999999999983
Q ss_pred cc----ccchhhhcccCCceeec--CCccc
Q 002132 665 LE----ELPEGIGKLINMKHLLN--YRTDS 688 (961)
Q Consensus 665 l~----~lp~~i~~L~~L~~L~l--~~~~~ 688 (961)
-. .+...+...++|++|++ ++|..
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 22 25566777889999999 66753
No 199
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.79 E-value=0.001 Score=71.45 Aligned_cols=180 Identities=19% Similarity=0.197 Sum_probs=95.9
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
..++|.+..++.+...+...... ......+.++|++|+||||||+.+++.. ...| .....+-...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~---~~~sg~~~~~--------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIASEL--QTNI---HVTSGPVLVK--------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHHHH--TCCE---EEEETTTCCS---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEechHhcC---------
Confidence 45788887777776665432100 1234568999999999999999999843 2111 1111111011
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC------------------CCcEEE-
Q 002132 263 EALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL------------------HGSKIL- 323 (961)
Q Consensus 263 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~ii- 323 (961)
...+...+ ..+. ++-++++|++........+.+...+.... ....++
T Consensus 90 ------------~~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 90 ------------QGDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ------------HHHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ------------HHHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 11111111 1222 34477888886543322333333322211 011222
Q ss_pred EEccchhhhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHHH
Q 002132 324 VTTRKKSVASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTIG 395 (961)
Q Consensus 324 vTtR~~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~~ 395 (961)
.|++...+.......-...+.+++.+.++-.+++.+.+..... ....+.+..|++.+.|.|-.+..+-
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHHH
Confidence 3444333222221111135789999999999999887632211 1124568899999999997554443
No 200
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=3.2e-05 Score=79.32 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=51.4
Q ss_pred hhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCcccccchhhhccC--CCcEEeecCcccccccch---
Q 002132 596 FRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIRKLPETLCELY--NLEKLYITRCLYLEELPE--- 670 (961)
Q Consensus 596 ~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~i~~L~--~L~~L~L~~~~~l~~lp~--- 670 (961)
..+++.|++|+|++|.... +..+|..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~---l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYR---LDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHHCTTCCEEECTTSCCCC---CGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred HhhCCCCCEEECCCCCCCC---CccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchh
Confidence 3567778888888776111 223445566777777777777777765 3344444 777777777774444442
Q ss_pred ----hhhcccCCceee
Q 002132 671 ----GIGKLINMKHLL 682 (961)
Q Consensus 671 ----~i~~L~~L~~L~ 682 (961)
.+..+++|+.|+
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 245666666665
No 201
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=6e-06 Score=78.36 Aligned_cols=92 Identities=14% Similarity=0.078 Sum_probs=42.4
Q ss_pred cCccEEEEeCCCCCC-cCCCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccccccccccccccccccc
Q 002132 818 TNLRSLVLYGCENCE-QLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISSMLELEEWDYGITRTGN 896 (961)
Q Consensus 818 ~~L~~L~L~~~~~~~-~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~L~~~~~~~~~~~~ 896 (961)
.+|+.|+|++|.+.+ .+..+.++++|+.|+|++|..+++.+-....... ...++|+.|+|++|+++++-...
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-~~~~~L~~L~Ls~C~~ITD~Gl~------ 133 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLE-NLQKSMLEMEIISCGNVTDKGII------ 133 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCH-HHHHHCCEEEEESCTTCCHHHHH------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcc-cccCCCCEEEcCCCCcCCHHHHH------
Confidence 356666666665432 2333556666666666666544332211110000 01235555666555544332111
Q ss_pred cccccccccceecccccccCc
Q 002132 897 TVINIMPRLSSLTIARCPKLK 917 (961)
Q Consensus 897 ~~~~~~p~L~~L~l~~c~~L~ 917 (961)
.+..+|+|++|+|++|+.++
T Consensus 134 -~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 134 -ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp -HGGGCTTCCEEEEESCTTCC
T ss_pred -HHhcCCCCCEEECCCCCCCC
Confidence 01245555555555555444
No 202
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.75 E-value=0.00064 Score=71.94 Aligned_cols=187 Identities=17% Similarity=0.105 Sum_probs=99.5
Q ss_pred CceecccchHHHHHHHHhcCCc------ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHH
Q 002132 183 EEICGRVGERNELLSKLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFR 256 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (961)
.+++|.+..++.+.+.+..... ......+.+.|+|++|+||||+|+.+++.. .. ..+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~---~~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SA---TFLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TC---EEEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CC---CeEEeeHHHHhh---
Confidence 4689999999998887643100 001123568899999999999999998842 21 233444332111
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHH-HHHHhCCceEEEEEeCCCCCCccC-----------hhhhHHhhhCC-----CCC
Q 002132 257 VAKAIAEALGIPSSNLGEFQSLLKL-ISESITGKRFLLVLDDVWDGDCIK-----------WEPFYLCLKNG-----LHG 319 (961)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~l~~~-l~~~l~~kr~LlVlDdv~~~~~~~-----------~~~l~~~l~~~-----~~g 319 (961)
.. ..+.....+. +......+..+|++|+++...... ...+...+... +.+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 1112222222 222233567899999996532110 11122222211 123
Q ss_pred cEEEEEccchhh-hhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch-hHHHH
Q 002132 320 SKILVTTRKKSV-ASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL-AAKTI 394 (961)
Q Consensus 320 s~iivTtR~~~~-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~ 394 (961)
..||.||..... .......-...+.+...+.++..+++...+......-. .+....|++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 456666665431 11110010145777888888888888776632221111 2356778888888775 44444
No 203
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.74 E-value=0.00064 Score=75.22 Aligned_cols=325 Identities=12% Similarity=0.086 Sum_probs=152.5
Q ss_pred ccccCC-CccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-ccccccCccceEEecCCccc
Q 002132 565 PICRVK-RIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP-RNIEKLVHLRYLNLSCQNIR 642 (961)
Q Consensus 565 ~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~L~~Lr~L~L~~~~i~ 642 (961)
.+..++ .|+++.+...-. .+-...|.+|.+|+.+.+..+... .+..+. ..+..+..|+.+.+..+ ++
T Consensus 58 aF~~~~~~L~sI~iP~svt-------~Ig~~AF~~C~~L~~i~~~~n~p~---~l~~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDTVT-------EIGSNAFYNCTSLKRVTIQDNKPS---CVKKIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp TTTTCCSCCCEEEECTTCC-------EECTTTTTTCTTCCEEEEGGGCCC---CCCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred hccCCCCcCEEEEECCCee-------EEhHHHhhCCccCceEeecCCCCC---eeeEechhhchhcccceeeccCCc-cc
Confidence 355554 488888755321 233445888888888888765310 134443 34566777777766543 45
Q ss_pred ccch-hhhccCCCcEEeecCcccccccc-hhhhcccCCceeecCCccccccccccCCCCCCCCcCCceEeCCCCCcCCCc
Q 002132 643 KLPE-TLCELYNLEKLYITRCLYLEELP-EGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRTLDEFHVIGGGGVDGRK 720 (961)
Q Consensus 643 ~Lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~ 720 (961)
.++. .+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+.......++|+.+.. ... .....
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~i---p~~--~~~i~ 197 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHI---PAK--VTRIG 197 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEE---CTT--CCEEC
T ss_pred eehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEE---CCc--ccccc
Confidence 4543 3567788888887643 33333 34566777777777554 2333332222233443321 100 00000
Q ss_pred ccccccccCCCcCCccccccCCCCCChhhhhccccCCCCCCCeEEEEeecCCCCCccCCcchHHHHHhhCCCCCCCceEE
Q 002132 721 ACWFESLKNLKHLQVCGIRRLGDVSDVGEAKRLELDKKKYLSCLRLSFDEKEQGGERRKNEDDQLLLEALQPPPDLKELE 800 (961)
Q Consensus 721 ~~~l~~L~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 800 (961)
...+..+.+|.......... .... .. ..... ......+.. ......+..+.
T Consensus 198 ~~af~~c~~l~~~~~~~~~~-~~~~---~~---~~~~~-~~~~~~~~~---------------------~~~~~~~~~~~ 248 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESY-PAID---NV---LYEKS-ANGDYALIR---------------------YPSQREDPAFK 248 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSS-CBSS---SC---EEEEC-TTSCEEEEE---------------------CCTTCCCSEEE
T ss_pred cchhhhccccceeccccccc-cccc---ce---eeccc-ccccccccc---------------------cccccccceEE
Confidence 11222222222211100000 0000 00 00000 000000000 00111222222
Q ss_pred EeeecCCCCCCCccccccCccEEEEeCCCCCCcCCCCCCccccceeecccccCceEeCCcccCCcccCcCcccceeeccc
Q 002132 801 IRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLPPLGKLQSLEKLSLTIMRSVKRVGDECLGIEIIDAFPKLKSLTISS 880 (961)
Q Consensus 801 l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~ 880 (961)
+... ....-...+..+.+|+.+.+.+....-.-..+.++++|+.+.+.. .++.++...+ .++.+|+.+.|.+
T Consensus 249 ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF-----~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 249 IPNG-VARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS--RITELPESVF-----AGCISLKSIDIPE 320 (394)
T ss_dssp CCTT-EEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTT-----TTCTTCCEEECCT
T ss_pred cCCc-ceEcccceeeecccccEEecccccceecCcccccccccccccCCC--cccccCceee-----cCCCCcCEEEeCC
Confidence 2110 000012234456777777775542211112266778888888853 3667766544 4667888888754
Q ss_pred cccccccccccccccccccccccccceecccccccCcCCCC-CCCCCCCccEEEEcccccccccccCCCCcccceEEecc
Q 002132 881 MLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPD-HIHQTTTLKELRIWACELLGKHYRGGTEKTGLKYHTFP 959 (961)
Q Consensus 881 ~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~~~~p 959 (961)
+++.+. ...+..+.+|+++.|-+ .++.++. .+.+|++|+.+++.++..... ....-++|+...+|
T Consensus 321 --~v~~I~-------~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~~---~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 321 --GITQIL-------DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQWN---AISTDSGLQNLPVA 386 (394)
T ss_dssp --TCCEEC-------TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHHH---TCBCCCCC------
T ss_pred --cccEeh-------HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeehh---hhhccCCCCEEEeC
Confidence 233332 12244678888888854 3667753 567788999999888754332 33344556666665
Q ss_pred C
Q 002132 960 T 960 (961)
Q Consensus 960 ~ 960 (961)
.
T Consensus 387 ~ 387 (394)
T 4gt6_A 387 P 387 (394)
T ss_dssp -
T ss_pred C
Confidence 3
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.72 E-value=0.00014 Score=88.84 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=82.6
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh-----cCCeEEEEEeCCcccHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR-----KFDKLLWVCVSDPFEQFRV 257 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~f~~~~wv~~s~~~~~~~~ 257 (961)
..++||+.++.++++.|.... ...+.++|.+|+||||+|+.+++...-.. .-..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 468999999999999997533 23468999999999999999998531100 011244443322110
Q ss_pred HHHHHHHcCCCCCCCCCHHH-HHHHHHHHhC-CceEEEEEeCCCCCC--------ccChhhhHHhhhCCCCCcEEEEEcc
Q 002132 258 AKAIAEALGIPSSNLGEFQS-LLKLISESIT-GKRFLLVLDDVWDGD--------CIKWEPFYLCLKNGLHGSKILVTTR 327 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~-l~~~l~~~l~-~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iivTtR 327 (961)
+. ....+.+. +...+...-. +++.+|++|+++... ......+...+..+ +..+|.+|.
T Consensus 240 ---------g~-~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GA-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEEC
T ss_pred ---------cC-ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecC
Confidence 00 00112222 2222333323 468999999997642 11112244444332 334555555
Q ss_pred chhhh-----hhhccCCcceEEcCCCCHHHHHHHHHHH
Q 002132 328 KKSVA-----SMMGSTDTDIITVMELTEEECWSLFKRL 360 (961)
Q Consensus 328 ~~~~~-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 360 (961)
..... ..+.. ....+.+.+++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~r-Rf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALER-RFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCS-CCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHh-CCceEEeCCCCHHHHHHHHHhh
Confidence 44321 11111 1246899999999999998654
No 205
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.72 E-value=0.00035 Score=77.04 Aligned_cols=189 Identities=14% Similarity=0.048 Sum_probs=98.8
Q ss_pred CCceecccchHHHHHHHHhcCCc------ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 182 EEEICGRVGERNELLSKLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
-.+++|.+..++.+.+++..... ......+-|.|+|++|+|||+||+.+++. ... ..+.++.+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhcc-
Confidence 35799999999999887732110 00112356889999999999999999873 221 2334433332110
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCC-------ccC----hhhhHHhhhC----CCCCc
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGD-------CIK----WEPFYLCLKN----GLHGS 320 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~-------~~~----~~~l~~~l~~----~~~gs 320 (961)
. . ......+...+...-.....+|+||+++... ... ...+...+.. .....
T Consensus 188 -~------------~-g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 -Y------------V-GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred -c------------c-chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 0 0011112222222223456799999996431 001 1122222221 12234
Q ss_pred EEEEEccchh-hhhhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch-hHHHH
Q 002132 321 KILVTTRKKS-VASMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL-AAKTI 394 (961)
Q Consensus 321 ~iivTtR~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL-ai~~~ 394 (961)
.||.||.... +...+...-...+.+...+.++..+++...+......- ..+....|++.+.|..- ++..+
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL----TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS----CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHHHHHHH
Confidence 5555665432 11111111114688999999999999988774322211 12356788888888554 44444
No 206
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.70 E-value=7.2e-05 Score=84.50 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=80.1
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcC------C-eEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKF------D-KLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------~-~~~wv~~s~~~~~~ 255 (961)
..++||+.+++++...|.... ..-+.|+|++|+|||++|+.+++. +...+ + .++.++++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~~----- 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMGT----- 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCCc-----
Confidence 459999999999999997533 234579999999999999999884 22211 1 122222220
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhhhh
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMM 335 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~ 335 (961)
...+. -.... ...+...-..++.+|++|. . ......+...+.. ...++|.+|.........
T Consensus 247 --------~~~g~--~e~~~---~~~~~~~~~~~~~iLfiD~--~--~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 247 --------KYRGE--FEDRL---KKVMDEIRQAGNIILFIDA--A--IDASNILKPSLAR--GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHH
T ss_pred --------cccch--HHHHH---HHHHHHHHhcCCeEEEEeC--c--hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHh
Confidence 00000 01112 2223333345678999991 1 1122223333332 235666666554421111
Q ss_pred cc-----CCcceEEcCCCCHHHHHHHHHHHH
Q 002132 336 GS-----TDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 336 ~~-----~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
.. ....++.+.+.+.++..+++....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 10 012579999999999999998764
No 207
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.70 E-value=1.6e-05 Score=73.77 Aligned_cols=111 Identities=7% Similarity=-0.004 Sum_probs=64.1
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
-+++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++... ..+.++++. -.....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~--~~~~~~---- 67 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVE--YLIDMP---- 67 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT--HHHHCH----
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhh--CChHhh----
Confidence 3578999999988887764321 112367999999999999999988421 222222222 111111
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCC-CCCcEEEEEccc
Q 002132 263 EALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNG-LHGSKILVTTRK 328 (961)
Q Consensus 263 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 328 (961)
..+.+... .-.|+||+++.........+...+... ..+.+||.||..
T Consensus 68 -----------------~~~~~~a~--~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 -----------------MELLQKAE--GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp -----------------HHHHHHTT--TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -----------------hhHHHhCC--CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 11111112 347899999887655555566555543 345678887764
No 208
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=1.2e-05 Score=82.58 Aligned_cols=80 Identities=21% Similarity=0.178 Sum_probs=60.3
Q ss_pred cccCccceEEecCCccccc---chhhhccCCCcEEeecCcccccccchhhhccc--CCceeecCCccccccccc------
Q 002132 626 EKLVHLRYLNLSCQNIRKL---PETLCELYNLEKLYITRCLYLEELPEGIGKLI--NMKHLLNYRTDSLRYMPV------ 694 (961)
Q Consensus 626 ~~L~~Lr~L~L~~~~i~~L---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~~~~p~------ 694 (961)
.++++|++|+|++|.|+.+ |..+.++++|++|+|++|. +..+ ..+..+. +|++|++.+|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5688999999999998865 4667899999999999998 5555 3355666 899999999975544442
Q ss_pred -cCCCCCCCCcCCc
Q 002132 695 -GIGRLTGLRTLDE 707 (961)
Q Consensus 695 -~i~~L~~L~~L~~ 707 (961)
.+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2456677777763
No 209
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.66 E-value=0.00017 Score=77.13 Aligned_cols=136 Identities=13% Similarity=0.237 Sum_probs=75.5
Q ss_pred ceecccchHHHHHHHHhcCCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 184 EICGRVGERNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.+++.. ...-...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccccc-cHHH
Confidence 478988888888877764311 001224678999999999999999999843 2222235566655432211 1111
Q ss_pred HHHHcCCCCC--CCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEcc
Q 002132 261 IAEALGIPSS--NLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTR 327 (961)
Q Consensus 261 i~~~l~~~~~--~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 327 (961)
+ ++.... .......+...+. ....-+|+||+++.........+...+..+. ....||.||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 222111 1111112222222 1334699999998776555666666665432 2333667766
Q ss_pred c
Q 002132 328 K 328 (961)
Q Consensus 328 ~ 328 (961)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 210
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.65 E-value=0.00061 Score=76.28 Aligned_cols=191 Identities=13% Similarity=0.056 Sum_probs=99.9
Q ss_pred CCceecccchHHHHHHHHhcC----C--cccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 182 EEEICGRVGERNELLSKLLCE----S--SEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
-.+++|.+..++.+.+.+... . .......+-|.|+|++|+|||+||+.+++.. ...-++.++...
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~--- 203 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD--- 203 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC----
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH---
Confidence 356899999999888876311 0 0001233568899999999999999999842 112233333321
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCc-------cChhhhHHh----hhC---CCCCcE
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDC-------IKWEPFYLC----LKN---GLHGSK 321 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-------~~~~~l~~~----l~~---~~~gs~ 321 (961)
+.. ...+. .......+.. ..-..+..+|+||+++.... .....+... +.. ...+..
T Consensus 204 -l~~----~~~g~--~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 -LVS----KWLGE--SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HHh----hhcch--HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 111 11111 1112222222 22235678999999975411 111222222 211 134556
Q ss_pred EEEEccchhhh-hhhccCCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCC-chhHHHHH
Q 002132 322 ILVTTRKKSVA-SMMGSTDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGL-PLAAKTIG 395 (961)
Q Consensus 322 iivTtR~~~~~-~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-PLai~~~~ 395 (961)
||.||...... ..+...-...+.+...+.++..++|...+........ ......|++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66677654321 1111111146788888888888999887632211111 23456788888884 44444443
No 211
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.65 E-value=0.00059 Score=72.23 Aligned_cols=182 Identities=14% Similarity=0.088 Sum_probs=98.0
Q ss_pred CceecccchHHHHHHHHhcCCc-------ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
.+++|.+..++++.+++...-. -.-...+.+.|+|++|+|||+||+.+++.. .. ..+.+ + ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~---~~i~v--~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QA---NFISI--K----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---EEEEE--C----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CC---CEEEE--E----hH
Confidence 4689999888888877653200 001133568899999999999999999842 21 22222 2 12
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCC--------------ccChhhhHHhhhC--CCCC
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGD--------------CIKWEPFYLCLKN--GLHG 319 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~--~~~g 319 (961)
++.... .+ .. . ..+...+.........+|++|+++... ......+...+.. ...+
T Consensus 84 ~l~~~~---~g-~~--~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLTMW---FG-ES--E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHHH---HT-TC--T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHhhh---cC-ch--H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 222221 11 11 1 122233333334567899999996310 0012334444432 2235
Q ss_pred cEEEEEccchhhh-hh-hcc-CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCch
Q 002132 320 SKILVTTRKKSVA-SM-MGS-TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLPL 389 (961)
Q Consensus 320 s~iivTtR~~~~~-~~-~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~PL 389 (961)
..||.||...... .. ... .-...+.+...+.++-.+++......... ..... ...+++.+.|.|=
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCH
Confidence 5677777655322 11 111 11146889999999999998877633221 11112 2345556666653
No 212
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.58 E-value=0.00013 Score=75.81 Aligned_cols=133 Identities=13% Similarity=0.105 Sum_probs=68.7
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
..++|.+..+.++.+.+..... ....|.|+|.+|+|||++|+.+++.. ...-...+.++++... ...+...+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~~-~~~~~~~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN-ENLLDSELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGSC-HHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCCC-hhHHHHHhc
Confidence 3588999999988877654322 12457799999999999999998842 1111234556655432 111111111
Q ss_pred HHcCCCCCCCCCH-HHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCC-----------CCCcEEEEEccc
Q 002132 263 EALGIPSSNLGEF-QSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNG-----------LHGSKILVTTRK 328 (961)
Q Consensus 263 ~~l~~~~~~~~~~-~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~ 328 (961)
+......... ......+.. ...-+|+||+++.........+...+..+ ....+||.||..
T Consensus 79 ---g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 79 ---GHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp ---CCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred ---CCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 1110000000 000000111 12348999999877554445565555432 134578887765
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.54 E-value=6.4e-05 Score=70.10 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=51.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
..+.|+|..|+|||||++.+++... ..-..++++........ . +..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~~~~~~-----------------------------~-~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAASMPLT-----------------------------D-AAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETTTSCCC-----------------------------G-GGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHHHhhHH-----------------------------H-HHhCC
Confidence 5789999999999999999998543 21112666665442211 1 11245
Q ss_pred EEEEEeCCCCCCccChhhhHHhhhCC-CCCc-EEEEEccc
Q 002132 291 FLLVLDDVWDGDCIKWEPFYLCLKNG-LHGS-KILVTTRK 328 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~ 328 (961)
-+|||||+.......-+.+...+... ..|. +||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68899999765433323343333221 1233 48888874
No 214
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.54 E-value=0.00045 Score=73.61 Aligned_cols=157 Identities=11% Similarity=0.116 Sum_probs=85.5
Q ss_pred CceecccchHHHHHHHHhcCCc--------ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCccc-
Q 002132 183 EEICGRVGERNELLSKLLCESS--------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFE- 253 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~- 253 (961)
..++|.+..++.+...+...-. ........+.++|++|+|||++|+.+++.. .. ..+.++.+...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l--~~---~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA--NA---PFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEcchhcccC
Confidence 4589999999998887754100 000123457899999999999999998843 21 234455443221
Q ss_pred ------HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccC------------hhhhHHhhhC
Q 002132 254 ------QFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIK------------WEPFYLCLKN 315 (961)
Q Consensus 254 ------~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~------------~~~l~~~l~~ 315 (961)
....+..+...... .+.. .+...+|+||+++...... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 11222222221100 0000 0235799999997654333 3445555543
Q ss_pred C----------CCCcEEEEEcc----chh-hhhhhccCCcceEEcCCCCHHHHHHHHHH
Q 002132 316 G----------LHGSKILVTTR----KKS-VASMMGSTDTDIITVMELTEEECWSLFKR 359 (961)
Q Consensus 316 ~----------~~gs~iivTtR----~~~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 359 (961)
. ..+..+|.|+. ... +...+...-...+.+.+++.++..+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 2 12445555541 211 11111111014689999999999998875
No 215
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.53 E-value=1.4e-05 Score=75.81 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=59.4
Q ss_pred CCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCc--CCCCCCc----cccceeecccccCceEeCCcccCCccc
Q 002132 794 PDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQ--LPPLGKL----QSLEKLSLTIMRSVKRVGDECLGIEII 867 (961)
Q Consensus 794 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~--l~~l~~l----~~L~~L~L~~~~~l~~~~~~~~~~~~~ 867 (961)
..|++|++++|.++..--..+..+++|+.|+|++|...++ +..++.+ ++|++|+|++|..+++.+-.. +
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-----L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-----L 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-----G
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-----H
Confidence 4678888888775432223345788888888888864432 2224443 578899998888776543322 2
Q ss_pred CcCcccceeecccccccccc
Q 002132 868 DAFPKLKSLTISSMLELEEW 887 (961)
Q Consensus 868 ~~f~~L~~L~l~~~~~L~~~ 887 (961)
..+++|+.|++++|+.++..
T Consensus 136 ~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GGCTTCCEEEEESCTTCCCH
T ss_pred hcCCCCCEEECCCCCCCCch
Confidence 46789999999998877653
No 216
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.49 E-value=0.00015 Score=76.82 Aligned_cols=163 Identities=14% Similarity=0.074 Sum_probs=85.7
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++.. ...-...+.++++.... .++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~--~~~~~~~v~v~~~~~~~--~l~~--- 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACS--ARSDRPLVTLNCAALNE--SLLE--- 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHS--SCSSSCCCEEECSSCCH--HHHH---
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhC--cccCCCeEEEeCCCCCh--HHHH---
Confidence 3588999999999888765432 12346799999999999999998742 11111234455554322 2222
Q ss_pred HHcCCCCCCCCC-H-HHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEccch
Q 002132 263 EALGIPSSNLGE-F-QSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTRKK 329 (961)
Q Consensus 263 ~~l~~~~~~~~~-~-~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~ 329 (961)
..+.+.....-. . ......+... ..-.|+||++..........+...+.... ...+||.||...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred HHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 122221110000 0 0000011111 12368999998876555555666665431 346788777653
Q ss_pred hhh---h-hhc-----cCCcceEEcCCCC--HHHHHHHHHH
Q 002132 330 SVA---S-MMG-----STDTDIITVMELT--EEECWSLFKR 359 (961)
Q Consensus 330 ~~~---~-~~~-----~~~~~~~~l~~L~--~~~~~~lf~~ 359 (961)
-.. . .+. ......+.++||. .+|...++.+
T Consensus 148 l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADH 188 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHH
Confidence 111 0 000 0012457888888 4565555543
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.43 E-value=0.00055 Score=77.17 Aligned_cols=186 Identities=11% Similarity=0.040 Sum_probs=100.0
Q ss_pred CceecccchHHHHHHHHhcCCcc-------cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
..++|.+..++++.+++...... .....+-|.|+|++|+|||++|+.+++. ... ..+.++.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~---~fv~vn~~~----- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGA---FFFLINGPE----- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSS---EEEEEEHHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCC---CEEEEEchH-----
Confidence 35899999999998877532000 0012345889999999999999999873 221 233343211
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCc-----------cChhhhHHhhhC--CCCCcEE
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDC-----------IKWEPFYLCLKN--GLHGSKI 322 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~i 322 (961)
+ ...+. ......+...+.....++..+|+||+++.... .....+...+.. ...+.+|
T Consensus 274 -l----~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -I----MSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -H----HTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -h----hhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1 11110 01112233334444456778999999942210 112234444432 2234556
Q ss_pred EEEccchh-hhhhhcc--CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCC-chhHHH
Q 002132 323 LVTTRKKS-VASMMGS--TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGL-PLAAKT 393 (961)
Q Consensus 323 ivTtR~~~-~~~~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~-PLai~~ 393 (961)
|.||.... +...+.. .-...+.+...+.++-.+++...+..... ..... ..++++.+.|. +-.+..
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAA 413 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHH
Confidence 66666543 2222211 11146899999999999999887632211 11112 34566677764 433433
No 218
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.40 E-value=0.00057 Score=76.98 Aligned_cols=97 Identities=15% Similarity=0.067 Sum_probs=60.2
Q ss_pred EEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEc----------c----chhh-hhhhccCCcceEEcCCCCHHHHHH
Q 002132 291 FLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTT----------R----KKSV-ASMMGSTDTDIITVMELTEEECWS 355 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt----------R----~~~~-~~~~~~~~~~~~~l~~L~~~~~~~ 355 (961)
-++++|+++..+...++.+...+...... .+|+.| . ...+ ....+.. ..+.+.+++.++..+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~--~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV--MIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE--EEEECCCCCHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc--ceeeCCCCCHHHHHH
Confidence 39999999888767777787777765444 344344 2 1111 1111111 457999999999999
Q ss_pred HHHHHHcCCCCCCChhhHHHHHHHHHhhc-CCCchhHHHH
Q 002132 356 LFKRLAFFGPSINDCEKLEQIGRRIAGKF-KGLPLAAKTI 394 (961)
Q Consensus 356 lf~~~~~~~~~~~~~~~~~~~~~~i~~~c-~G~PLai~~~ 394 (961)
++.+.+..... .- ..+....|++.+ .|.|..+..+
T Consensus 374 iL~~~~~~~~~-~~---~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 374 IIKIRAQTEGI-NI---SEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHTC-CB---CHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHhCC-CC---CHHHHHHHHHHccCCCHHHHHHH
Confidence 99887632111 11 134566777777 7888755444
No 219
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.39 E-value=0.0024 Score=70.54 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=84.7
Q ss_pred eeEEEEEeccccccccccccCCCccEEEecCCCCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccC-ccccc
Q 002132 549 VRHLMLIIGREASFRVPICRVKRIRSLLIDNSRTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIP-RNIEK 627 (961)
Q Consensus 549 ~r~lsl~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp-~~i~~ 627 (961)
+..+.+...-..--...|..|.+|+++.+..+.... ...+-...|..|..|+.+.+..+ +..++ ..+..
T Consensus 66 L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~---l~~Ig~~aF~~c~~L~~i~~~~~-------~~~I~~~aF~~ 135 (394)
T 4gt6_A 66 LTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSC---VKKIGRQAFMFCSELTDIPILDS-------VTEIDSEAFHH 135 (394)
T ss_dssp CCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCC---CCEECTTTTTTCTTCCBCGGGTT-------CSEECTTTTTT
T ss_pred CEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCe---eeEechhhchhcccceeeccCCc-------cceehhhhhhh
Confidence 455555332111124567889999999987642110 01223445888889988887655 44454 45678
Q ss_pred cCccceEEecCCcccccc-hhhhccCCCcEEeecCcccccccchhhhcccCCceeecCCccccccccccCCCCCCCCc
Q 002132 628 LVHLRYLNLSCQNIRKLP-ETLCELYNLEKLYITRCLYLEELPEGIGKLINMKHLLNYRTDSLRYMPVGIGRLTGLRT 704 (961)
Q Consensus 628 L~~Lr~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 704 (961)
+.+|+.+.+..+ ++.++ ..+..+..|+.+.+..+ +..+......-.+|+.+.+..+. ...-...+..+.+|..
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFSECFALST 209 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCE
T ss_pred hcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcc-cccccchhhhccccce
Confidence 899999999754 44443 44778899999998764 44555443344678888776542 1112233445555544
No 220
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.36 E-value=0.0011 Score=80.09 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=87.8
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh----cCCeEEEE-EeCCcccHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR----KFDKLLWV-CVSDPFEQFRV 257 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv-~~s~~~~~~~~ 257 (961)
..++||+.+++++.+.|.... ..-+.|+|.+|+|||++|+.+++...-.. .....+|. +.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 468999999999999997543 24467999999999999999988431110 12333321 11110
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHh-CCceEEEEEeCCCCCCc-----cChhhhHHhhhC--CCCCcEEEEEccch
Q 002132 258 AKAIAEALGIPSSNLGEFQSLLKLISESI-TGKRFLLVLDDVWDGDC-----IKWEPFYLCLKN--GLHGSKILVTTRKK 329 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~LlVlDdv~~~~~-----~~~~~l~~~l~~--~~~gs~iivTtR~~ 329 (961)
+.. .....+.+.....+.+.+ ..++.+|++||++.... ..-......+.. .....++|.+|...
T Consensus 254 -------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp --------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred -------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 000 111223333333333333 34578999999975410 001111122221 12345666666654
Q ss_pred hhhhhhcc-----CCcceEEcCCCCHHHHHHHHHHHH
Q 002132 330 SVASMMGS-----TDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 330 ~~~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
........ .....+.+.+.+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 43211110 112468999999999998887654
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.33 E-value=0.003 Score=65.06 Aligned_cols=187 Identities=14% Similarity=0.062 Sum_probs=93.9
Q ss_pred CCceecccchHHHHHHHH---hcCCccc---CCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 182 EEEICGRVGERNELLSKL---LCESSEQ---QKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L---~~~~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
-.+++|.+..++++.+.+ .....-. ....+-+.|+|++|+||||||+.+++.. ... .+.++.+.-.+
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~i~~~~~~~-- 83 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVP---FFTISGSDFVE-- 83 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCC---EEEECSCSSTT--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCC---EEEEeHHHHHH--
Confidence 346899887777665543 2211000 0112347899999999999999998842 212 23333222110
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCcc--------------ChhhhHHhhhC--CCCC
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCI--------------KWEPFYLCLKN--GLHG 319 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~--------------~~~~l~~~l~~--~~~g 319 (961)
... ......+...+.........++++|+++..... ....+...+.. ...+
T Consensus 84 ------------~~~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 ------------MFV-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp ------------SCC-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred ------------Hhh-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 000 111223333344444556789999998431100 11122222221 2234
Q ss_pred cEEEEEccchh-hhhhhcc--CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCC-CchhHHH
Q 002132 320 SKILVTTRKKS-VASMMGS--TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKG-LPLAAKT 393 (961)
Q Consensus 320 s~iivTtR~~~-~~~~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-~PLai~~ 393 (961)
..||.||.... +...... .-...+.+...+.++-.+++........ ...... ...++..+.| .+--+..
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHHH
Confidence 55666666543 2111111 1114677888888888888877653211 111111 2356677777 5544443
No 222
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.005 Score=67.55 Aligned_cols=181 Identities=14% Similarity=0.090 Sum_probs=97.0
Q ss_pred CCceecccchHHHHHHHHhcCCc-------ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccH
Q 002132 182 EEEICGRVGERNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQ 254 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 254 (961)
=.++.|-++.+++|.+.+.-+-. -+-...+-|.++|++|.|||+||+.+++.. ... .+.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~--~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI--GAN---FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCE---EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEehhhhcc-
Confidence 34688988888887765532100 001234668899999999999999999943 222 33444333111
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHH-HHhCCceEEEEEeCCCCCC------ccC--------hhhhHHhhhC--CC
Q 002132 255 FRVAKAIAEALGIPSSNLGEFQSLLKLIS-ESITGKRFLLVLDDVWDGD------CIK--------WEPFYLCLKN--GL 317 (961)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~-~~l~~kr~LlVlDdv~~~~------~~~--------~~~l~~~l~~--~~ 317 (961)
. -..+.+...+.+. ..-...+++|++|+++..- ... ...+...+.. ..
T Consensus 254 -------------k--~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 -------------K--YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp -------------S--SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred -------------c--cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 0 0111122222222 2234568999999996421 000 1123333322 22
Q ss_pred CCcEEEEEccchhhhhh-h-ccC-CcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc
Q 002132 318 HGSKILVTTRKKSVASM-M-GST-DTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP 388 (961)
Q Consensus 318 ~gs~iivTtR~~~~~~~-~-~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 388 (961)
.+..||.||..+..... + ..+ -...+++..-+.++-.++|+.+...-.. ....+ ...|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 34567777776543221 1 111 1246788888888888888776533211 11112 356777777743
No 223
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0056 Score=66.03 Aligned_cols=180 Identities=13% Similarity=0.104 Sum_probs=96.1
Q ss_pred CceecccchHHHHHHHHhcC----Cc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCE----SS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
.++.|-++.+++|.+.+.-+ +- -+-...+-|.++|++|.|||.||+++++.. ... .+.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~--~~~---f~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT--DCK---FIRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH--TCE---EEEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh--CCC---ceEEEhHHhhc--
Confidence 46888888888877655321 00 001233557899999999999999999943 322 33444332111
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHH-HHHhCCceEEEEEeCCCCCCc--------c--C----hhhhHHhhhC--CCC
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLI-SESITGKRFLLVLDDVWDGDC--------I--K----WEPFYLCLKN--GLH 318 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l-~~~l~~kr~LlVlDdv~~~~~--------~--~----~~~l~~~l~~--~~~ 318 (961)
. -..+.+...+.+ ...-...+++|++|+++..-. . . ...+...+.. ...
T Consensus 221 ------------k--~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 ------------K--YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp ------------S--STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ------------c--ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 0 011112222222 222335689999999975310 0 1 1122222222 233
Q ss_pred CcEEEEEccchhhhhh--hcc-CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc
Q 002132 319 GSKILVTTRKKSVASM--MGS-TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP 388 (961)
Q Consensus 319 gs~iivTtR~~~~~~~--~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 388 (961)
+..||.||..++.... ... .-...+.+..-+.++-.++|+.+.-.-. ....-+ ...|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHCCCCC
Confidence 4456667765542211 111 1126788988899988999987653221 111122 356777777743
No 224
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.24 E-value=0.00044 Score=83.53 Aligned_cols=158 Identities=13% Similarity=0.191 Sum_probs=91.5
Q ss_pred CceecccchHHHHHHHHhcCCcc---cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
..++|.+..++.+...+...... .......+.++|++|+|||++|+.+++.. ...-...+.++++...+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhccccc----
Confidence 46899999998888877643210 01233478999999999999999999843 2223345666655422110
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEccc
Q 002132 260 AIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTRK 328 (961)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 328 (961)
.. ....+...++. ...-+|+||++..........+...+..+. ...+||+||..
T Consensus 565 ----------~~--~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ----------ST--SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ----------CC--C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ----------cc--ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 00 01111111221 223489999998876666666666665421 34678888873
Q ss_pred hh-----h----hhhhc----cCCcceEEcCCCCHHHHHHHHHHHH
Q 002132 329 KS-----V----ASMMG----STDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 329 ~~-----~----~~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
.. + ...+. ..-...+.+.+++.++..+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 0 11111 1101478899999988888877654
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.24 E-value=0.00054 Score=82.72 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=80.7
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHh---c-CCe-EEEEEeCCcccHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKR---K-FDK-LLWVCVSDPFEQFRV 257 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~-~~wv~~s~~~~~~~~ 257 (961)
..++||+.+++++...|.... ..-+.++|++|+|||++|+.+++...-.. . .+. .+.++...
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~------- 246 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------- 246 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc-------
Confidence 469999999999999997533 23467999999999999999988421000 0 011 11221100
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhhhhcc
Q 002132 258 AKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMMGS 337 (961)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~~~ 337 (961)
...+ .-.. .+...+......++.+|++|.. . ..-..+...+. ....++|.||...........
T Consensus 247 ------~~~G--~~e~---~l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 247 ------KYRG--EFED---RLKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp --------------CT---THHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ------cccc--hHHH---HHHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 0000 0011 1222333334467789999921 1 11122332332 224567766665442111110
Q ss_pred C-----CcceEEcCCCCHHHHHHHHHHHH
Q 002132 338 T-----DTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 338 ~-----~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
. ....+.+.+.+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0 12569999999999999998654
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.17 E-value=0.0042 Score=69.33 Aligned_cols=181 Identities=14% Similarity=0.099 Sum_probs=96.1
Q ss_pred CceecccchHHHHHHHHhc---CCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHH
Q 002132 183 EEICGRVGERNELLSKLLC---ESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFR 256 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (961)
.+++|.+..++++.+.+.. ... -.-...+-|.|+|++|+|||+||+.+++.. ... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCC---eeeCCHHHHHHH--
Confidence 4689988877776655431 100 000112237899999999999999999843 222 234443321110
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCc----------c----ChhhhHHhhhC--CCCCc
Q 002132 257 VAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDC----------I----KWEPFYLCLKN--GLHGS 320 (961)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~----------~----~~~~l~~~l~~--~~~gs 320 (961)
+ . ..........+.....+...+|+||+++.... . ....+...+.. ...+.
T Consensus 89 --------~----~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 --------F----V-GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp --------C----T-THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred --------H----h-cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 0 0 00112233334444456789999999965311 0 11223322221 12355
Q ss_pred EEEEEccchhhhh-h-hccCC-cceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc
Q 002132 321 KILVTTRKKSVAS-M-MGSTD-TDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP 388 (961)
Q Consensus 321 ~iivTtR~~~~~~-~-~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 388 (961)
.||.||....... . ..... ...+.+...+.++-.++++.++..... ..... ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 6777776654322 1 11111 137888888888888888776632211 11111 344788888876
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.08 E-value=0.0022 Score=64.27 Aligned_cols=86 Identities=22% Similarity=0.247 Sum_probs=55.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCC-----------CC-CCCCCHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGI-----------PS-SNLGEFQS 277 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~~ 277 (961)
-.++.|+|.+|+||||||..++. ..-..++|++....++...+.. +.+..+. .. ....+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 35899999999999999999987 1235688988877556555443 3333222 11 11222334
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCC
Q 002132 278 LLKLISESITGKRFLLVLDDVWDG 301 (961)
Q Consensus 278 l~~~l~~~l~~kr~LlVlDdv~~~ 301 (961)
....++..+..+.-+||+|.+...
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHHH
Confidence 455555555445779999998643
No 228
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.0072 Score=66.22 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=90.7
Q ss_pred CCCceecccchHHHHHHHHhcCCc-------ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCccc
Q 002132 181 DEEEICGRVGERNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFE 253 (961)
Q Consensus 181 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 253 (961)
.-.++.|-++.+++|.+.+.-.-. -+-...+-|.++|++|+|||+||+.+++.. ... .+.|+.+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~--~~~---~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST--KAA---FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH--TCE---EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---eEEEecchhhc
Confidence 335688999888888776532110 001234568899999999999999999943 322 33444332111
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHhCCceEEEEEeCCCCC--------C--ccC----hhhhHHhhhC--C
Q 002132 254 QFRVAKAIAEALGIPSSNLGEFQS-LLKLISESITGKRFLLVLDDVWDG--------D--CIK----WEPFYLCLKN--G 316 (961)
Q Consensus 254 ~~~~~~~i~~~l~~~~~~~~~~~~-l~~~l~~~l~~kr~LlVlDdv~~~--------~--~~~----~~~l~~~l~~--~ 316 (961)
. -..+.+. +...+...-...+++|++|+++.. . ... ...+...+.. .
T Consensus 245 --------------~--~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 --------------K--YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp --------------S--SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred --------------c--ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 0 0111112 222222233456899999998521 0 011 1222222221 2
Q ss_pred CCCcEEEEEccchhhhh-h-hccCC-cceEEcCCCCH-HHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCC
Q 002132 317 LHGSKILVTTRKKSVAS-M-MGSTD-TDIITVMELTE-EECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGL 387 (961)
Q Consensus 317 ~~gs~iivTtR~~~~~~-~-~~~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 387 (961)
..+..||.||...+... . ...+. ...+++..++. ++-.++|+...-+-. .....+ ...|++.+.|.
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~-l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS-LAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC-BCTTCC----HHHHHHHTTTC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHHCCCC
Confidence 34556667776554211 1 11111 13577766654 445556665543211 111122 34666777664
No 229
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.06 E-value=0.0022 Score=69.00 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=85.6
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
..++|++..++.+...+... .-+.++|++|+|||+||+.+++. .... ...+.........++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~---~~~i~~~~~~~~~~l~g~~~ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLD---FHRIQFTPDLLPSDLIGTMI 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCC---EEEEECCTTCCHHHHHEEEE
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCC---eEEEecCCCCChhhcCCcee
Confidence 46889999998888877642 24789999999999999999883 2222 23344433333333221100
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhCC--ceEEEEEeCCCCCCccChhhhHHhhhCC-----------CCCcEEEEEccch
Q 002132 263 EALGIPSSNLGEFQSLLKLISESITG--KRFLLVLDDVWDGDCIKWEPFYLCLKNG-----------LHGSKILVTTRKK 329 (961)
Q Consensus 263 ~~l~~~~~~~~~~~~l~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR~~ 329 (961)
... ..... ....+ ...++++|+++.........+...+... .....||.|+...
T Consensus 94 ----~~~-~~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 94 ----YNQ-HKGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp ----EET-TTTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ----ecC-CCCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 000 00000 00001 1258999999876555455555555432 2234455455422
Q ss_pred h------hhhhhccCCcceEEcCCCCHHHHHHHHHHHHc
Q 002132 330 S------VASMMGSTDTDIITVMELTEEECWSLFKRLAF 362 (961)
Q Consensus 330 ~------~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 362 (961)
. +.......-...+.+.+.+.++-.+++.+.+.
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 11111111012588999999999999988764
No 230
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.02 E-value=0.00049 Score=72.87 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=35.6
Q ss_pred chHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeC
Q 002132 190 GERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVS 249 (961)
Q Consensus 190 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 249 (961)
...+.+.+++..... .....+.|+|+.|+|||+||+.+++.... .....+++++++
T Consensus 135 ~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~ 190 (308)
T 2qgz_A 135 EAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHH
T ss_pred HHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHH
Confidence 344455566654321 12357889999999999999999995321 333345666543
No 231
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.02 E-value=0.0082 Score=65.85 Aligned_cols=127 Identities=17% Similarity=0.157 Sum_probs=77.6
Q ss_pred CCCCCCCceEEEeeecCCCCCCCccccccCccEEEEeCCCCCCcCC--CCCCccccceeecccccCceEeCCcccCCccc
Q 002132 790 LQPPPDLKELEIRFYRGNTVFPNWLMSLTNLRSLVLYGCENCEQLP--PLGKLQSLEKLSLTIMRSVKRVGDECLGIEII 867 (961)
Q Consensus 790 l~~~~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 867 (961)
+....+|+.+.+..+. ...-...+..+.+|+.+.+..+ ...+. .+.++.+|+.+.+.. .++.++...+
T Consensus 213 f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF----- 282 (379)
T 4h09_A 213 FSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLC----- 282 (379)
T ss_dssp TTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTT-----
T ss_pred cccccccceeeeccce-eEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceecccccc-----
Confidence 3445667777664321 1101233456788888888665 22333 266788888888854 3666665543
Q ss_pred CcCcccceeeccccccccccccccccccccccccccccceecccccccCcCCCC-CCCCCCCccEEEEcc
Q 002132 868 DAFPKLKSLTISSMLELEEWDYGITRTGNTVINIMPRLSSLTIARCPKLKALPD-HIHQTTTLKELRIWA 936 (961)
Q Consensus 868 ~~f~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~lp~-~~~~l~~L~~L~l~~ 936 (961)
..+++|+.+.+.+. .++.+.. ..+..+++|+.+.|-+ .++.|+. .+.+|++|+.+.|-.
T Consensus 283 ~~c~~L~~i~l~~~-~i~~I~~-------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 SGCSNLTKVVMDNS-AIETLEP-------RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEEECCT-TCCEECT-------TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccc-ccceehh-------hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 46778888888653 2333321 2244678888888854 3666654 566788888888743
No 232
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.011 Score=64.56 Aligned_cols=179 Identities=13% Similarity=0.064 Sum_probs=94.5
Q ss_pred CceecccchHHHHHHHHhc----CCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLC----ESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
.++.|-++.+++|.+.+.- ++- -+-...+-|.++|++|.|||+||+.+++.. ... .+.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~--~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT--DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH--TCE---EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc--CCC---eEEEEhHHhhc--
Confidence 3578888888888765421 100 001234567899999999999999999943 322 33444332110
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHH-HHHHhCCceEEEEEeCCCCCCc------c--C------hhhhHHhhhC--CCC
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKL-ISESITGKRFLLVLDDVWDGDC------I--K------WEPFYLCLKN--GLH 318 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~-l~~~l~~kr~LlVlDdv~~~~~------~--~------~~~l~~~l~~--~~~ 318 (961)
. -..+.+...+. +...-...+++|++|+++..-. . . ...+...+.. ...
T Consensus 282 ------------k--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 ------------K--YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------C--SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------c--cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 0 01112222222 2223345689999999964310 0 0 1112222222 223
Q ss_pred CcEEEEEccchhhhh-hh-ccC-CcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCC
Q 002132 319 GSKILVTTRKKSVAS-MM-GST-DTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGL 387 (961)
Q Consensus 319 gs~iivTtR~~~~~~-~~-~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 387 (961)
+..||.||....... .+ ..+ -...+++..-+.++-.++|+.+.-.-. ....-+ ...|++.|.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCC
Confidence 445566776544221 11 111 125788888888888899987763221 111122 34677778775
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.01 E-value=0.0017 Score=74.57 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=79.0
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
.+++|-+...+.+.+.+.-..-.......++.++|++|+||||||+.++... ... ..-+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~---~~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL--GRK---FVRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH--TCE---EEEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc--CCC---eEEEEecccchhhhhhhHHH
Confidence 4578877777766554331110001134689999999999999999998843 222 22333333222222111111
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCcc----ChhhhHHhhhCCC---------------CCcEEE
Q 002132 263 EALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDCI----KWEPFYLCLKNGL---------------HGSKIL 323 (961)
Q Consensus 263 ~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~ii 323 (961)
...+. ........+.. .....-+++||+++..... ....+...+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11110 00111112222 2223448899999765322 1233443332111 234566
Q ss_pred EEccchhhh-hh-hccCCcceEEcCCCCHHHHHHHHHHHH
Q 002132 324 VTTRKKSVA-SM-MGSTDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 324 vTtR~~~~~-~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
.||...... .. .... ..+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~--~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM--EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE--EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc--ceeeeCCCCHHHHHHHHHHHH
Confidence 666654311 11 1111 468899999998888887654
No 234
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.91 E-value=0.00028 Score=73.43 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=80.5
Q ss_pred CCceecccchHHHHHHHHhcCCc-c-----cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 182 EEEICGRVGERNELLSKLLCESS-E-----QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~-~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
-.+++|.+..++.+.+.+..-.. + .....+-+.|+|++|+|||+||+.+++.. ...|- .+..+.-.+
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~~---~v~~~~~~~-- 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--HVPFF---SMGGSSFIE-- 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH--TCCCC---CCCSCTTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCEE---EechHHHHH--
Confidence 35689999888887776541000 0 00112237799999999999999999843 22221 111111000
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCc---------------cChhhhHHhhhCC---C
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDC---------------IKWEPFYLCLKNG---L 317 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~---------------~~~~~l~~~l~~~---~ 317 (961)
.+.... ......+ +......+..+|++||++.... .....+...+... .
T Consensus 83 --------~~~~~~--~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 83 --------MFVGLG--ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp --------SCSSSC--SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred --------hhcchH--HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 010100 1111111 1222224567999999965321 1122333333221 1
Q ss_pred CCcEEEEEccchhhhh-h-hcc-CCcceEEcCCCCHHHHHHHHHHHH
Q 002132 318 HGSKILVTTRKKSVAS-M-MGS-TDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 318 ~gs~iivTtR~~~~~~-~-~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
....||.||....... . ... .-...+.+.+.+.++-.+++...+
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2245666666553211 1 111 111457888888888888887765
No 235
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.90 E-value=0.0016 Score=79.59 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=73.9
Q ss_pred ceecccchHHHHHHHHhcCCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH
Q 002132 184 EICGRVGERNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA 260 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 260 (961)
.++|.+..++.+...+..... +.+.....+.|+|+.|+|||++|+.+++.. ...-...+.++++...... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~--~~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH--HSSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhccchh-H---
Confidence 579999999888887764321 002234678999999999999999998843 1111234555554432210 0
Q ss_pred HHHHcCCCCC---CCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEc
Q 002132 261 IAEALGIPSS---NLGEFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTT 326 (961)
Q Consensus 261 i~~~l~~~~~---~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 326 (961)
...+.+..+ +......+...++. ...-+|+||++..........+...+..+. .+..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 011111000 00011122222222 234699999998776656666776666431 244477777
Q ss_pred cc
Q 002132 327 RK 328 (961)
Q Consensus 327 R~ 328 (961)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.86 E-value=0.0019 Score=78.04 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=73.7
Q ss_pred CceecccchHHHHHHHHhcCCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAK 259 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 259 (961)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++.. . ...+.++++...+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 3588999888888777653221 001234578999999999999999998843 1 3345555544222100
Q ss_pred HHHHHcCCCCCCCCCH---HHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEE
Q 002132 260 AIAEALGIPSSNLGEF---QSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVT 325 (961)
Q Consensus 260 ~i~~~l~~~~~~~~~~---~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivT 325 (961)
...+-+..+..... ..+...+++ ....+|+||++..........+...+..+. ....||.|
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred --HhhhcCCCCCCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 00111111111000 112222221 346799999998776555666666665431 23457777
Q ss_pred ccc
Q 002132 326 TRK 328 (961)
Q Consensus 326 tR~ 328 (961)
|..
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 654
No 237
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0052 Score=67.36 Aligned_cols=179 Identities=14% Similarity=0.092 Sum_probs=93.6
Q ss_pred CceecccchHHHHHHHHhc----CCc---ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLC----ESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
.++.|-++.+++|.+.+.- ++- -+-...+-|.++|++|.|||+||+.+++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~--~~~---f~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT--NAT---FLKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCE---EEEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh--CCC---EEEEehhhhhh--
Confidence 4688999888888765432 110 001234668899999999999999999943 222 33444332110
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCCC-------Ccc---Ch----hhhHHhhhC--CCC
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISE-SITGKRFLLVLDDVWDG-------DCI---KW----EPFYLCLKN--GLH 318 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~-------~~~---~~----~~l~~~l~~--~~~ 318 (961)
. -..+.+...+.+.. .-...+++|++|+++.. ... .. ..+...+.. ...
T Consensus 254 ------------~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 254 ------------M--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ------------S--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ------------c--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 0 01112222222222 22345799999998531 000 11 122222322 123
Q ss_pred CcEEEEEccchhhhhh-h-ccC-CcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCC
Q 002132 319 GSKILVTTRKKSVASM-M-GST-DTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGL 387 (961)
Q Consensus 319 gs~iivTtR~~~~~~~-~-~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 387 (961)
+..||.||..+..... + ... -...+++..-+.++-.++|+.+.-.-.. ...-+ ...|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 4456667776543221 1 111 1246888888888888888766532111 11112 34667777764
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.79 E-value=0.0082 Score=62.96 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999984
No 239
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.017 Score=62.54 Aligned_cols=179 Identities=14% Similarity=0.069 Sum_probs=93.5
Q ss_pred CceecccchHHHHHHHHhcC---Cc----ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCE---SS----EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
.++.|-++.+++|.+.+.-. .+ -+-...+-|.++|++|.|||.||+++++.. ... .+.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~--~~~---fi~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT--SAT---FLRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH--TCE---EEEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh--CCC---EEEEEHHHhh---
Confidence 46788888888877655321 10 001234568899999999999999999943 222 2333332211
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHH-HhCCceEEEEEeCCCCCCc------c----C----hhhhHHhhhC--CCC
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISE-SITGKRFLLVLDDVWDGDC------I----K----WEPFYLCLKN--GLH 318 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~kr~LlVlDdv~~~~~------~----~----~~~l~~~l~~--~~~ 318 (961)
. .-..+.+...+.+.. .-+...++|++|+++..-. . . ...+...+.. ...
T Consensus 254 -----------s--k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 -----------Q--KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -----------C--SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------h--ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 0 011122222222222 2235689999999864210 0 1 1122222221 223
Q ss_pred CcEEEEEccchhhhhh-h-ccC-CcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCC
Q 002132 319 GSKILVTTRKKSVASM-M-GST-DTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGL 387 (961)
Q Consensus 319 gs~iivTtR~~~~~~~-~-~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~ 387 (961)
+..||.||...+.... + ... -...+++..-+.++-.++|+.+.-.-. ....-+ ...|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 4556667766543222 1 111 124577887788888888877663211 111122 34566777664
No 240
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.74 E-value=0.019 Score=62.95 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=7.1
Q ss_pred HhhcCCceeEEecC
Q 002132 595 LFRESTSLRALDFW 608 (961)
Q Consensus 595 ~~~~~~~Lr~L~L~ 608 (961)
.|.+|.+|+.++|.
T Consensus 64 aF~~C~~L~~I~lp 77 (379)
T 4h09_A 64 NFNSCYNMTKVTVA 77 (379)
T ss_dssp TTTTCTTCCEEEEC
T ss_pred HhhCCCCCCEEEeC
Confidence 34555555555554
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.74 E-value=0.00069 Score=70.43 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=46.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEe--CCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCV--SDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESIT 287 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~ 287 (961)
.+++.|+|++|+||||||.+++.. ....++|+++ ....+. - ..+.+...+.+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 357789999999999999999874 1124567777 322110 0 0345666666666666
Q ss_pred CceEEEEEeCCCC
Q 002132 288 GKRFLLVLDDVWD 300 (961)
Q Consensus 288 ~kr~LlVlDdv~~ 300 (961)
..+ +||+|++..
T Consensus 182 ~~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 QHR-VIVIDSLKN 193 (331)
T ss_dssp HCS-EEEEECCTT
T ss_pred hCC-EEEEecccc
Confidence 556 999999964
No 242
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.60 E-value=0.034 Score=59.88 Aligned_cols=158 Identities=10% Similarity=-0.022 Sum_probs=101.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH-HhCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISE-SITG 288 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~-~l~~ 288 (961)
.++..++|..|.||++.|+.+.+... ...|+....+.+....++ +++.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDW---------------------NAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCH---------------------HHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCH---------------------HHHHHHhcCcCCcc
Confidence 46889999999999999999988532 234533222222222333 333333221 2346
Q ss_pred ceEEEEEeCCCC-CCccChhhhHHhhhCCCCCcEEEEEccc-------hhhhhhhccCCcceEEcCCCCHHHHHHHHHHH
Q 002132 289 KRFLLVLDDVWD-GDCIKWEPFYLCLKNGLHGSKILVTTRK-------KSVASMMGSTDTDIITVMELTEEECWSLFKRL 360 (961)
Q Consensus 289 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~-------~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 360 (961)
.+-++|+|+++. .+...++.+...+.....++.+|++|.. ..+...+... ...++..+++.++....+.+.
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr-~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANR-SVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTT-CEEEEECCCCTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhC-ceEEEeeCCCHHHHHHHHHHH
Confidence 677889999977 5556778888888776667777776643 2233332221 267899999999999888877
Q ss_pred HcCCCCCCChhhHHHHHHHHHhhcCCCchhHHHH
Q 002132 361 AFFGPSINDCEKLEQIGRRIAGKFKGLPLAAKTI 394 (961)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~i~~~c~G~PLai~~~ 394 (961)
+-..+- .-..+.+..|++.++|.+..+...
T Consensus 155 ~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 633221 112456788999999988877653
No 243
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.58 E-value=0.0022 Score=63.71 Aligned_cols=114 Identities=17% Similarity=0.021 Sum_probs=66.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCC--CCCHHHHHHHHHHHh
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSN--LGEFQSLLKLISESI 286 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~l~~~l 286 (961)
.-.++.|+|..|+||||++..+++.. ..+-..++.+....... ....+++.++..... ....+++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 34789999999999999999888843 33333445444332211 112344444433221 223445666666655
Q ss_pred CCceE-EEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh
Q 002132 287 TGKRF-LLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 287 ~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 330 (961)
.+.++ +||+|.+...+.+..+.+ ..+.+ .|..||+|.+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecccc
Confidence 54444 999999976543332333 33333 2778999998653
No 244
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.39 E-value=0.0058 Score=62.18 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=54.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHh----cCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC---------CCCCHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKR----KFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS---------NLGEFQ 276 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 276 (961)
-.++.|+|.+|+|||||++.++....... .-..++|++....++...+. ++++.++.... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999999887421111 13578999887765554443 34455543210 111222
Q ss_pred H---HHHHHHHHhC-CceEEEEEeCCCC
Q 002132 277 S---LLKLISESIT-GKRFLLVLDDVWD 300 (961)
Q Consensus 277 ~---l~~~l~~~l~-~kr~LlVlDdv~~ 300 (961)
+ ....+.+.+. .+.-+||+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 2233444443 4677999999864
No 245
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.31 E-value=0.0085 Score=60.50 Aligned_cols=114 Identities=17% Similarity=0.104 Sum_probs=63.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC--------------------
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS-------------------- 270 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------------- 270 (961)
.++.|+|.+|+|||||++.++.... ..-..++|+.... ....+...+ ..++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCce
Confidence 5899999999999999999986432 2223567776544 334443333 23332110
Q ss_pred ---CCCCHHHHHHHHHHHhC---CceEEEEEeCCCCC---CccChhhhHHhhhC--CCCCcEEEEEccch
Q 002132 271 ---NLGEFQSLLKLISESIT---GKRFLLVLDDVWDG---DCIKWEPFYLCLKN--GLHGSKILVTTRKK 329 (961)
Q Consensus 271 ---~~~~~~~l~~~l~~~l~---~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtR~~ 329 (961)
...+.+++.+.+...+. -+..+||+|..... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11144555555554432 23459999998632 22233444444332 12467788888765
No 246
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.31 E-value=0.016 Score=55.62 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=68.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC---cccHHHHHHHHHHH---cCCCC-CCCC-------CHH
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD---PFEQFRVAKAIAEA---LGIPS-SNLG-------EFQ 276 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~---l~~~~-~~~~-------~~~ 276 (961)
..|-|++-.|.||||.|--..- +.-.+-..+.++.+-. ......++..+.-. .+... .... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4567777777999999987776 3444444566665433 22333343333100 00000 0011 112
Q ss_pred HHHHHHHHHhCCceE-EEEEeCCCC---CCccChhhhHHhhhCCCCCcEEEEEccchh
Q 002132 277 SLLKLISESITGKRF-LLVLDDVWD---GDCIKWEPFYLCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 277 ~l~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 330 (961)
......++.+.+.+| |||||++.. ......+.+...+........||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 333445566665555 999999832 233466778888877777788999999874
No 247
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.23 E-value=0.017 Score=63.07 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+.++|++|+|||++|+.+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999884
No 248
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.22 E-value=0.011 Score=63.23 Aligned_cols=85 Identities=24% Similarity=0.280 Sum_probs=57.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC-----CCCCHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS-----NLGEFQSLLKLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 283 (961)
.-.++.|+|++|+||||||.+++... ...-..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 34799999999999999999998853 2233458899888777654 4555554421 1234556655555
Q ss_pred HHhC-CceEEEEEeCCCC
Q 002132 284 ESIT-GKRFLLVLDDVWD 300 (961)
Q Consensus 284 ~~l~-~kr~LlVlDdv~~ 300 (961)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5543 4455889999854
No 249
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.12 E-value=0.02 Score=59.25 Aligned_cols=85 Identities=9% Similarity=0.164 Sum_probs=56.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCC-----CCCHHHH-HHHHHHH
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSN-----LGEFQSL-LKLISES 285 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l-~~~l~~~ 285 (961)
++-|+|.+|+||||||.+++.....+..-..++||+....++.. .+++++..... ..+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999999888753211113568999998888764 36777765321 2345554 3333332
Q ss_pred --h-CCceEEEEEeCCCCC
Q 002132 286 --I-TGKRFLLVLDDVWDG 301 (961)
Q Consensus 286 --l-~~kr~LlVlDdv~~~ 301 (961)
+ +++.-+||+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 3 356789999998653
No 250
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.07 E-value=0.045 Score=64.84 Aligned_cols=181 Identities=10% Similarity=0.022 Sum_probs=96.2
Q ss_pred CceecccchHHHHHHHHh----cCCcc---cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLL----CESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~----~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
.++.|-++.+++|.+.+. .++-- .-...+-|.++|++|+|||+||+.+++.. ..+ .+.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCE---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCe---EEEEEhHH-----
Confidence 357888888888777653 22110 01234668899999999999999999953 222 33443221
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCCc------cC-hh----hhHHhhhCC--CCCcEE
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGDC------IK-WE----PFYLCLKNG--LHGSKI 322 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~------~~-~~----~l~~~l~~~--~~gs~i 322 (961)
+ ... ........+...+....+..+.+|++|+++..-. .+ -. .+...+... ..+..|
T Consensus 274 -l----~sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -I----MSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -H----HSS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -h----hcc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1 110 0011122233334444456789999999964210 11 11 122222211 123445
Q ss_pred EEEccchhh-hhhhcc--CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc
Q 002132 323 LVTTRKKSV-ASMMGS--TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP 388 (961)
Q Consensus 323 ivTtR~~~~-~~~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 388 (961)
|.||..... -..+.. .-...+++..-+.++-.++|+.+.-... .....+ ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 556655432 222211 1125688888888888888887642211 111122 456778888764
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.05 E-value=0.02 Score=61.68 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=57.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC-----CCCCHHHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS-----NLGEFQSLLKLISE 284 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~~ 284 (961)
-.++.|+|.+|+||||||.+++... ...-..++|++....++.. .++.++.... ...+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3578899999999999999988753 2233479999998877654 2455554321 12345666666666
Q ss_pred HhCC-ceEEEEEeCCCC
Q 002132 285 SITG-KRFLLVLDDVWD 300 (961)
Q Consensus 285 ~l~~-kr~LlVlDdv~~ 300 (961)
..+. .--+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 6553 345899999854
No 252
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.05 E-value=0.049 Score=56.26 Aligned_cols=128 Identities=13% Similarity=0.104 Sum_probs=67.1
Q ss_pred EEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh-CCceE
Q 002132 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESI-TGKRF 291 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~ 291 (961)
+.++|++|+||||||+.++... .. ..+++..+.-.+. ...+.+.....+.+.. .....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~--~~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES--GL---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT--TC---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHc--CC---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999998842 11 2444443321110 0000111122222221 34578
Q ss_pred EEEEeCCCCCCc-------cC----hhhhHHhhhCCC--CCcEEEEEccchhhhhhh-c-c-CCcceEEcCCCCHHHHHH
Q 002132 292 LLVLDDVWDGDC-------IK----WEPFYLCLKNGL--HGSKILVTTRKKSVASMM-G-S-TDTDIITVMELTEEECWS 355 (961)
Q Consensus 292 LlVlDdv~~~~~-------~~----~~~l~~~l~~~~--~gs~iivTtR~~~~~~~~-~-~-~~~~~~~l~~L~~~~~~~ 355 (961)
++++|++..... .. ...+...+..+. ...-++.+|..+.+.... . . .-...+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999964210 01 122222333222 234455566665543221 1 0 112567888888888888
Q ss_pred HHHHHH
Q 002132 356 LFKRLA 361 (961)
Q Consensus 356 lf~~~~ 361 (961)
+|+...
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 888764
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.98 E-value=0.021 Score=61.25 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=41.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHh----cCCeEEEEEeCCcccHHHHHHHHHHHcCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKR----KFDKLLWVCVSDPFEQFRVAKAIAEALGI 267 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (961)
.-.++.|+|.+|+||||||.+++....... .-..++|++....++.+.+. ++++.++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 457999999999999999999887421111 23578999998887776654 34555543
No 254
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.97 E-value=0.021 Score=61.24 Aligned_cols=84 Identities=20% Similarity=0.229 Sum_probs=56.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC-----CCCCHHHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS-----NLGEFQSLLKLISE 284 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~~ 284 (961)
-.++.|+|.+|+||||||.+++... ...-..++|++....++.. .++.++.... ...+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 3689999999999999999998743 2333568999988877653 2455554321 12345566555555
Q ss_pred HhC-CceEEEEEeCCCC
Q 002132 285 SIT-GKRFLLVLDDVWD 300 (961)
Q Consensus 285 ~l~-~kr~LlVlDdv~~ 300 (961)
..+ .+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 554 3456899999854
No 255
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.93 E-value=0.049 Score=61.13 Aligned_cols=178 Identities=12% Similarity=0.061 Sum_probs=90.5
Q ss_pred CCceecccchHHHHHHHH---hcCCccc---CCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 182 EEEICGRVGERNELLSKL---LCESSEQ---QKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L---~~~~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
-.+++|.+..+.++.+.. .....-. -.-.+-+.|+|++|+||||||+.++... . ...+.++.+.-.+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~---~~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--T---CCEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C---CCEEEEehhHHHH--
Confidence 356889887776665543 2211000 0011238899999999999999999843 2 2334444332110
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC----CceEEEEEeCCCCCCc----------cCh----hhhHHhhhCCC
Q 002132 256 RVAKAIAEALGIPSSNLGEFQSLLKLISESIT----GKRFLLVLDDVWDGDC----------IKW----EPFYLCLKNGL 317 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~----~kr~LlVlDdv~~~~~----------~~~----~~l~~~l~~~~ 317 (961)
.. .......+...++ ....++++|+++.... .++ ..+...+....
T Consensus 103 ------------~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------MF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------SC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------hh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 00 0011122333333 2347999999954211 111 22222232222
Q ss_pred --CCcEEEEEccchhhhhh-h-cc-CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc
Q 002132 318 --HGSKILVTTRKKSVASM-M-GS-TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP 388 (961)
Q Consensus 318 --~gs~iivTtR~~~~~~~-~-~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 388 (961)
.+..|+.||..+..... . .. .-...+.+...+.++-.++++.++-+. ....... ...|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 33455556666554221 1 11 112478888888888888887665221 1111111 345777777765
No 256
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.85 E-value=0.023 Score=54.35 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcch
Q 002132 212 IISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 257
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.83 E-value=0.014 Score=62.67 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC-----CCCCHHHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS-----NLGEFQSLLKLISE 284 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~~ 284 (961)
-.++.|.|.+|+||||||.+++... ...-..++|++....++.. .++.++.... ...+.+++...+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 3689999999999999999988753 2333478999998877654 2455554321 11234555554444
Q ss_pred HhC-CceEEEEEeCCCC
Q 002132 285 SIT-GKRFLLVLDDVWD 300 (961)
Q Consensus 285 ~l~-~kr~LlVlDdv~~ 300 (961)
..+ .+--+||+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 332 3345889998743
No 258
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.77 E-value=0.02 Score=68.85 Aligned_cols=158 Identities=11% Similarity=0.049 Sum_probs=84.1
Q ss_pred CceecccchHHHHHHHHhcCCc--c-----cCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH
Q 002132 183 EEICGRVGERNELLSKLLCESS--E-----QQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF 255 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~--~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 255 (961)
.+++|.+..++++.+++...-. + .-.....|.|+|++|+||||||+.++.. .... .+.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~---~i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCE---EEEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCc---EEEEEchH-----
Confidence 4689999999998887753100 0 0123356899999999999999999884 2222 23333211
Q ss_pred HHHHHHHHHcCCCCCCCCCH-HHHHHHHHHHhCCceEEEEEeCCCCCCc------c-----ChhhhHHhhhCC--CCCcE
Q 002132 256 RVAKAIAEALGIPSSNLGEF-QSLLKLISESITGKRFLLVLDDVWDGDC------I-----KWEPFYLCLKNG--LHGSK 321 (961)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~-~~l~~~l~~~l~~kr~LlVlDdv~~~~~------~-----~~~~l~~~l~~~--~~gs~ 321 (961)
+.... ..+. ..+...+.........++++|++..... . ....+...+... ..+..
T Consensus 274 ---------l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 ---------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ---------HSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred ---------hhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 10000 0111 1222233333334578999999954211 0 012222223221 23345
Q ss_pred EEEEccchhh-hhhhcc--CCcceEEcCCCCHHHHHHHHHHHH
Q 002132 322 ILVTTRKKSV-ASMMGS--TDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 322 iivTtR~~~~-~~~~~~--~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
+|.||..... ...+.. .-...+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5666655432 111111 101456788888888888888765
No 259
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.74 E-value=0.019 Score=61.12 Aligned_cols=57 Identities=25% Similarity=0.361 Sum_probs=40.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhc----CCeEEEEEeCCcccHHHHHHHHHHHcCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRK----FDKLLWVCVSDPFEQFRVAKAIAEALGI 267 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (961)
-.++.|+|.+|+||||||.+++........ -..++|++....++.+++. ++++.++.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 358999999999999999998874211110 2478999998887776655 34556544
No 260
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.71 E-value=0.016 Score=61.79 Aligned_cols=58 Identities=22% Similarity=0.405 Sum_probs=41.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHh---------cC-----CeEEEEEeCCcccHHHHHHHHHHHcCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKR---------KF-----DKLLWVCVSDPFEQFRVAKAIAEALGI 267 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (961)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++.+++.. +++.++.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 347999999999999999999886421111 11 4789999998887776654 4555544
No 261
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.64 E-value=0.06 Score=54.98 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=74.5
Q ss_pred EEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh-CCceE
Q 002132 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESI-TGKRF 291 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l-~~kr~ 291 (961)
+.|+|++|+||||||+.++... . ...+.+... .+. ... ..........+.+.. .....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~--~---~~~i~~~~~------~~~----~~~------~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS------DFV----EMF------VGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH------HHH----HSC------TTHHHHHHHHHHHHHTTSSSE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--C---CCEEEeeHH------HHH----HHH------hhHHHHHHHHHHHHHHhcCCe
Confidence 8899999999999999999843 2 223333321 111 100 001111122222222 34568
Q ss_pred EEEEeCCCCCC----------ccCh----hhhHHhhhCCC--CCcEEEEEccchhhhhh-hcc--CCcceEEcCCCCHHH
Q 002132 292 LLVLDDVWDGD----------CIKW----EPFYLCLKNGL--HGSKILVTTRKKSVASM-MGS--TDTDIITVMELTEEE 352 (961)
Q Consensus 292 LlVlDdv~~~~----------~~~~----~~l~~~l~~~~--~gs~iivTtR~~~~~~~-~~~--~~~~~~~l~~L~~~~ 352 (961)
++++|+++... ...+ ..+...+..+. ....++.||..+..... ... .-...+.+...+.++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 99999984210 0111 22333333222 22334445555543221 111 112468888888888
Q ss_pred HHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc
Q 002132 353 CWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP 388 (961)
Q Consensus 353 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 388 (961)
-.++++..+-+.. ...... ...|++.+.|.-
T Consensus 191 r~~il~~~~~~~~-~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 191 REQILRIHARGKP-LAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred HHHHHHHHHcCCC-CCcccC----HHHHHHHcCCCC
Confidence 8888877652211 111111 235667777653
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.53 E-value=0.027 Score=58.78 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=47.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITG 288 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 288 (961)
..++.|+|.+|+||||++..++...... .-..+..+.... .....+.+....+..+.+.....+...+...+.. + .
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~-~ 181 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F-S 181 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-G
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-c
Confidence 4689999999999999999998753221 222455665433 2223333444444444332222333444444443 3 3
Q ss_pred ceEEEEEeCC
Q 002132 289 KRFLLVLDDV 298 (961)
Q Consensus 289 kr~LlVlDdv 298 (961)
+.=++|+|-.
T Consensus 182 ~~dlvIiDT~ 191 (296)
T 2px0_A 182 EYDHVFVDTA 191 (296)
T ss_dssp GSSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 3457888943
No 263
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.16 E-value=0.017 Score=56.71 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 188 RVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 188 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
|++.++.+.+.+.... .....+|+|.|..|+||||+++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556777877776542 235579999999999999999998874
No 264
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.12 E-value=0.038 Score=57.43 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=86.4
Q ss_pred CCceecccchHHHHHHHHhcCCc-------ccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccH
Q 002132 182 EEEICGRVGERNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQ 254 (961)
Q Consensus 182 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 254 (961)
-.+++|.+..++++.+....-.. .-.-... +.|+|+.|+||||||+.++... . ...+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH-----
Confidence 34678877666655543321100 0000112 8899999999999999999843 2 233443321
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCceEEEEEeCCCCCC----------ccChhh----hHHhhhCCC--C
Q 002132 255 FRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKRFLLVLDDVWDGD----------CIKWEP----FYLCLKNGL--H 318 (961)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~~~~--~ 318 (961)
.+. .... ......+...+...-.....++|+|++.... ...+.. +...+..+. .
T Consensus 108 -~~~----~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -DFV----EMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -HHH----HSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -HHH----HHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 111 1000 0001112222222223456899999984210 011222 222222222 2
Q ss_pred CcEEEEEccchhhhhh-h-cc-CCcceEEcCCCCHHHHHHHHHHHHcCCCCCCChhhHHHHHHHHHhhcCCCc
Q 002132 319 GSKILVTTRKKSVASM-M-GS-TDTDIITVMELTEEECWSLFKRLAFFGPSINDCEKLEQIGRRIAGKFKGLP 388 (961)
Q Consensus 319 gs~iivTtR~~~~~~~-~-~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~G~P 388 (961)
...++.||..+..... . .. .-...+.+...+.++-.+++...+-... ...... ...+++.+.|..
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC-CCcccC----HHHHHHHcCCCC
Confidence 2334445555443221 1 10 1125788888898888888877653211 111111 235666776654
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.04 E-value=0.064 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999774
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.01 E-value=0.07 Score=55.93 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=27.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeC
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVS 249 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 249 (961)
.++.|+|.+|+|||||++.++...... .-..++|+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCc
Confidence 689999999999999999998753221 11246676654
No 267
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.99 E-value=0.34 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...+|.++|.+|+||||++.+++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46899999999999999999988753
No 268
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.88 E-value=0.12 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|.|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 269
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.87 E-value=0.04 Score=58.52 Aligned_cols=53 Identities=19% Similarity=0.035 Sum_probs=35.0
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCe-EEEEEeCCcc
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDK-LLWVCVSDPF 252 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~ 252 (961)
++++.+..-. +-..++|+|..|+|||||++.+.+... +.+-+. ++++-+.+..
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~-~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIA-YNHPDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHH-HHCTTSEEEEEEESSCH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHh-hcCCCeeEEEEEecCCh
Confidence 4556665443 335789999999999999999988532 222232 4456666543
No 270
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.78 E-value=0.069 Score=58.71 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=35.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc-cHHHHHHHHH
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF-EQFRVAKAIA 262 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~ 262 (961)
+.++|+|..|+|||||++.+..+... ..-+..+++-+.... +..+++.++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhh
Confidence 35889999999999999999886422 233556777776654 3445555454
No 271
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.77 E-value=0.0071 Score=58.39 Aligned_cols=108 Identities=14% Similarity=-0.040 Sum_probs=53.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCC--CCCCCHHHHHHHHHHHhCC
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPS--SNLGEFQSLLKLISESITG 288 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--~~~~~~~~l~~~l~~~l~~ 288 (961)
.++.|+|+.|+||||++..++..... ... .++.+..... .+.-...+...++... ....+.+ .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~-~g~-~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL-GKK-KVAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH-TTC-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCC-eEEEEeeccc--cccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 47889999999999999766664322 222 2333332211 0000000001111100 0001111 12233344
Q ss_pred ceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccch
Q 002132 289 KRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKK 329 (961)
Q Consensus 289 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 329 (961)
+.-+|++|.+...+. +|......+.+. +..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeecc
Confidence 567999999977643 355554444443 67899988753
No 272
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.75 E-value=0.15 Score=52.90 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=45.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcchhhHh-cCCeEEEEEeCCcccHHHHHHHHHHHc------CCC-CCCCCCHHHHH
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNHVEVKR-KFDKLLWVCVSDPFEQFRVAKAIAEAL------GIP-SSNLGEFQSLL 279 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l------~~~-~~~~~~~~~l~ 279 (961)
....+|+|+|..|+||||||+.+........ ....+..|+...-+-.......+.... ... .+...+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4668999999999999999999887543221 123444445544332333334443321 111 23445566666
Q ss_pred HHHHHHhCC
Q 002132 280 KLISESITG 288 (961)
Q Consensus 280 ~~l~~~l~~ 288 (961)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666665444
No 273
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.65 E-value=0.1 Score=54.59 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=49.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCCC---CCCCCHHHH-HHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIPS---SNLGEFQSL-LKLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~l-~~~l~ 283 (961)
...++.|+|.+|+||||++..++... ...-..+.++..... ....+-+...++..+.+. ....+...+ ...+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l--~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH--HhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 45899999999999999999998854 222234555554321 112222344555544321 111222222 23344
Q ss_pred HHhCCceEEEEEeCCCC
Q 002132 284 ESITGKRFLLVLDDVWD 300 (961)
Q Consensus 284 ~~l~~kr~LlVlDdv~~ 300 (961)
..+....-++|+|-...
T Consensus 181 ~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCc
Confidence 44444445788897643
No 274
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.63 E-value=0.054 Score=56.94 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=52.5
Q ss_pred ecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHH--HHH
Q 002132 186 CGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKA--IAE 263 (961)
Q Consensus 186 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~--i~~ 263 (961)
+|....+..+...+..... .....+|+|.|..|+||||||+.+..-......-..+..+......-....+.. +..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~ 147 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMK 147 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGG
T ss_pred hcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHh
Confidence 4444555555544443322 346679999999999999999988763211001123455554432221111111 001
Q ss_pred HcCCCCCCCCCHHHHHHHHHHHhCCc
Q 002132 264 ALGIPSSNLGEFQSLLKLISESITGK 289 (961)
Q Consensus 264 ~l~~~~~~~~~~~~l~~~l~~~l~~k 289 (961)
.. ..+..-+.+.+.+.+.....++
T Consensus 148 ~~--g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 148 RK--GFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp GT--TSGGGBCHHHHHHHHHHHHTTC
T ss_pred hc--cCcccccHHHHHHHHHhhhccc
Confidence 11 1234455666677676666655
No 275
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.59 E-value=0.21 Score=52.70 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=38.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEAL 265 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 265 (961)
-.++.|.|.+|+||||||..++.+...+. ..++|++.. .+.+++...++...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 36889999999999999999887542222 568887766 45677777776653
No 276
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.53 E-value=0.031 Score=53.87 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=15.8
Q ss_pred ccCccceEEecCCccc-----ccchhhhccCCCcEEeecCcc
Q 002132 627 KLVHLRYLNLSCQNIR-----KLPETLCELYNLEKLYITRCL 663 (961)
Q Consensus 627 ~L~~Lr~L~L~~~~i~-----~Lp~~i~~L~~L~~L~L~~~~ 663 (961)
.-.+|++|+|++|.|. .|-+.+..-..|++|+|++|.
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3344444444444443 222333333444444444444
No 277
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.52 E-value=0.83 Score=50.91 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=35.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
-.++.|.|.+|+||||||..++...... .-..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 3689999999999999999998864222 223678877654 4456666554
No 278
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.42 E-value=0.19 Score=55.05 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=46.1
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc-cHHHHHHHHHHH
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF-EQFRVAKAIAEA 264 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~ 264 (961)
+.++.|..-. +-+.++|+|..|+|||+|++++.+.. .+.+-+.++++-+.... .+.++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4566665433 33568999999999999999998852 23345677888887654 556777777665
No 279
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.38 E-value=0.039 Score=53.19 Aligned_cols=119 Identities=14% Similarity=0.040 Sum_probs=79.1
Q ss_pred cccCCCccEEEecCC-CCCCCccchhhhHHHhhcCCceeEEecCCCCCCCCccccccCccccccCccceEEecCCccc--
Q 002132 566 ICRVKRIRSLLIDNS-RTSCSYFNGEILEELFRESTSLRALDFWGSYDVSPFWTLKIPRNIEKLVHLRYLNLSCQNIR-- 642 (961)
Q Consensus 566 ~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~~~~~~~~~~lp~~i~~L~~Lr~L~L~~~~i~-- 642 (961)
...-+.|+.|.+.++ .+... ....+.+.+..-+.|+.|+|++|. +++.....+...+..-..|++|+|++|.|+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~--ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKE--RIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHH--HHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HhcCCCccEEECCCCCCCCHH--HHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 455678999999875 43321 123455667788899999999997 222222234455566678999999999987
Q ss_pred ---ccchhhhccCCCcEEeecCccc--cc-----ccchhhhcccCCceeecCCcc
Q 002132 643 ---KLPETLCELYNLEKLYITRCLY--LE-----ELPEGIGKLINMKHLLNYRTD 687 (961)
Q Consensus 643 ---~Lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~~ 687 (961)
.|-+.+..-..|++|+|++|.. +. .+-..+..=+.|..|+++.+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4555566667799999986531 22 233344555678888887653
No 280
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.36 E-value=0.1 Score=55.18 Aligned_cols=52 Identities=13% Similarity=0.015 Sum_probs=37.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEAL 265 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 265 (961)
-.++.|.|.+|+||||||..++.+... .-..++|++.. .+.+++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 368899999999999999999886422 33457776654 45667777776554
No 281
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.32 E-value=0.09 Score=52.64 Aligned_cols=57 Identities=26% Similarity=0.384 Sum_probs=36.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhH---h-cCCeEEEEEeCCcccHHHHHHHHHHHcC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVK---R-KFDKLLWVCVSDPFEQFRVAKAIAEALG 266 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (961)
.-.+++|+|+.|+|||||++.++...... . .-..++|+.....+.... +..+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 34799999999999999999997632110 1 134588887665444333 334444443
No 282
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.24 E-value=0.078 Score=55.03 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=61.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHh--------cCCeEEEEEeCCcccHH-HHHHH------------HHHHcCCCC
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKR--------KFDKLLWVCVSDPFEQF-RVAKA------------IAEALGIPS 269 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~s~~~~~~-~~~~~------------i~~~l~~~~ 269 (961)
.++.|+|.+|+|||||+..++....... .-..++++++....... .-... +++.+....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~l~~ 110 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQP 110 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEECC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceEEee
Confidence 5899999999999999999887432110 02357787776654211 11111 123332211
Q ss_pred -----CCCCCHHHHHHHHHHHhCCceEEEEEeCCCC--C-CccC---hhhhHHhhhCC--CCCcEEEEEccchh
Q 002132 270 -----SNLGEFQSLLKLISESITGKRFLLVLDDVWD--G-DCIK---WEPFYLCLKNG--LHGSKILVTTRKKS 330 (961)
Q Consensus 270 -----~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~--~-~~~~---~~~l~~~l~~~--~~gs~iivTtR~~~ 330 (961)
....+..+ .+.+.....+ .-+||||.+.. . +... ...+...+..- ..|..||+++....
T Consensus 111 ~~~~~~~~ls~g~-~~~i~~l~~~-~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 111 LIGSLPNIMAPEW-FDGLKRAAEG-RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp CTTSCCCTTSHHH-HHHHHHHHTT-CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred cCCCCcccCCHHH-HHHHHHhcCC-CCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 11112222 3344444544 55899999865 2 1111 13344444332 24677888887653
No 283
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.24 E-value=0.094 Score=57.09 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=38.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhH----hcCCeEEEEEeCCcccHHHHHHHHHHHcCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVK----RKFDKLLWVCVSDPFEQFRVAKAIAEALGI 267 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (961)
-.++.|+|.+|+|||||+..++-..... ..-..++|++....++...+ +.+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCC
Confidence 3589999999999999999775321111 12346899988776666544 346666654
No 284
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.22 E-value=0.16 Score=51.88 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=63.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhH-h--cC-----------CeEEEEEeCCcc----cHH--------------HHH
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVK-R--KF-----------DKLLWVCVSDPF----EQF--------------RVA 258 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~f-----------~~~~wv~~s~~~----~~~--------------~~~ 258 (961)
.+++|+|+.|.|||||.+.++--. .. . .+ ..+.| .+.+.+ ++. +..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~-~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~ 108 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST-NLPEAYEIGVTVNDIVYLYEELKGLDRDLF 108 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE-CCGGGSCTTSBHHHHHHHHHHHTCCCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE-EeCCCCccCCcHHHHHHHhhhhcchHHHHH
Confidence 479999999999999999987531 00 0 00 11221 122221 221 123
Q ss_pred HHHHHHcCCC-CC------CCCCHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchh
Q 002132 259 KAIAEALGIP-SS------NLGEFQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 259 ~~i~~~l~~~-~~------~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 330 (961)
.++++.++.. .. .....+...-.+...+-.++-+++||+--.. |...-..+...+..-.. .||++|.+..
T Consensus 109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~ 186 (263)
T 2pjz_A 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD 186 (263)
T ss_dssp HHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred HHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence 4455566554 21 1111222233345556666779999987543 22333445555544333 6888888766
Q ss_pred hhhh
Q 002132 331 VASM 334 (961)
Q Consensus 331 ~~~~ 334 (961)
.+..
T Consensus 187 ~~~~ 190 (263)
T 2pjz_A 187 MLNL 190 (263)
T ss_dssp GGGG
T ss_pred HHHH
Confidence 5443
No 285
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.17 E-value=0.1 Score=56.01 Aligned_cols=91 Identities=23% Similarity=0.345 Sum_probs=52.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcC----CeEEEEEeCCcccHHHHHHHHHHHcCCCCC------------CC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKF----DKLLWVCVSDPFEQFRVAKAIAEALGIPSS------------NL 272 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------~~ 272 (961)
.-.++.|+|..|+|||||+..++......... ..++|++....+....+ ..+++..+.... ..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 44799999999999999999988742111111 24589988766544443 335554432210 00
Q ss_pred CCHHHHHHHHHHHhC------CceEEEEEeCCCC
Q 002132 273 GEFQSLLKLISESIT------GKRFLLVLDDVWD 300 (961)
Q Consensus 273 ~~~~~l~~~l~~~l~------~kr~LlVlDdv~~ 300 (961)
....++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233334444443 3567888898754
No 286
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.09 E-value=0.031 Score=55.20 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 192 RNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
.++|.+.+... .+...+|+|+|..|.|||||++.+..-.
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555432 1245799999999999999999998743
No 287
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.07 E-value=0.027 Score=54.70 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 288
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.97 E-value=0.024 Score=54.25 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999998873
No 289
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.96 E-value=0.028 Score=63.20 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=34.9
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.++|++..++.+...+... .-|.++|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 5789998888888777632 34789999999999999999984
No 290
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.96 E-value=0.024 Score=54.04 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=18.7
Q ss_pred EEEEEEcCCCchHHHHHHHH
Q 002132 211 HIISIVGMGGIGKTTLAQLA 230 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v 230 (961)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 291
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.93 E-value=0.068 Score=47.94 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=32.4
Q ss_pred EEecCCCCCCCCcccc--ccCccccccCccceEEecCCcccccchh-hhccCCCcEEeecCcc
Q 002132 604 ALDFWGSYDVSPFWTL--KIPRNIEKLVHLRYLNLSCQNIRKLPET-LCELYNLEKLYITRCL 663 (961)
Q Consensus 604 ~L~L~~~~~~~~~~~~--~lp~~i~~L~~Lr~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~ 663 (961)
+++.+++. +. .+|..+. .+|++|+|++|.|+.||.. +..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~------L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG------LTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC------CCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC------CccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 55556555 55 5665432 3577777777777777654 4566677777777665
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.84 E-value=0.029 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999887
No 293
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.83 E-value=0.027 Score=53.54 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998873
No 294
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.75 E-value=0.14 Score=54.55 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=68.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhh--------------------HhcCCeEEEEEeCC----cccH------------
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEV--------------------KRKFDKLLWVCVSD----PFEQ------------ 254 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~f~~~~wv~~s~----~~~~------------ 254 (961)
.+++|+|+.|.|||||++.+.--.+. +..-..+.+|.=.. ..++
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 58999999999999999988652110 00001233332110 1111
Q ss_pred ------HHHHHHHHHHcCCCC-----CCCCC-HHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCC--CCC
Q 002132 255 ------FRVAKAIAEALGIPS-----SNLGE-FQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNG--LHG 319 (961)
Q Consensus 255 ------~~~~~~i~~~l~~~~-----~~~~~-~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~g 319 (961)
.+...++++.++... +..-+ .+.-.-.|.+.|-.+.-+|++|+--.. +...-..+...+..- ..|
T Consensus 135 ~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g 214 (366)
T 3tui_C 135 TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214 (366)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 122334555555431 11222 333344566777888889999997543 222223344444331 246
Q ss_pred cEEEEEccchhhhhhhc
Q 002132 320 SKILVTTRKKSVASMMG 336 (961)
Q Consensus 320 s~iivTtR~~~~~~~~~ 336 (961)
..||++|.+..++..++
T Consensus 215 ~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 215 LTILLITHEMDVVKRIC 231 (366)
T ss_dssp CEEEEEESCHHHHHHHC
T ss_pred CEEEEEecCHHHHHHhC
Confidence 77899998887765543
No 295
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.75 E-value=0.026 Score=55.26 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|.|+|+.|+||||+|+.++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 296
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.73 E-value=0.047 Score=57.65 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=31.5
Q ss_pred cccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 187 GRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 187 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+-+.-.+++++.+...-. .+....|.|+|+.|+||||+++.++..
T Consensus 3 ~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 334455666666543222 235567899999999999999999884
No 297
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.68 E-value=0.26 Score=54.01 Aligned_cols=90 Identities=19% Similarity=0.155 Sum_probs=48.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHHHHHHcCCCCC---CCCCHHHHH-HHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKAIAEALGIPSS---NLGEFQSLL-KLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~l~-~~l~ 283 (961)
...+|.++|.+|+||||++..++.... ..-..++.++... .....+.+....+..+.+.. ...+...+. ..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 458999999999999999999987542 3323455555432 22233334444454444321 112222222 2333
Q ss_pred HHhCCceEEEEEeCCCC
Q 002132 284 ESITGKRFLLVLDDVWD 300 (961)
Q Consensus 284 ~~l~~kr~LlVlDdv~~ 300 (961)
.......=++++|-...
T Consensus 174 ~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HTTTTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCC
Confidence 33223334667887653
No 298
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.66 E-value=0.071 Score=51.40 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...+|.|.|++|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998853
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.56 E-value=0.037 Score=54.19 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...+|.|+|+.|+||||+|+.+....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44799999999999999999998843
No 300
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.55 E-value=0.31 Score=51.44 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=35.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHHHHHHcC
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKAIAEALG 266 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~ 266 (961)
....+++|+|+.|+||||+++.++...+ ..-..+.++...- .....+-+....+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 3568999999999999999999988532 2222344444322 1223334444555554
No 301
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.52 E-value=0.23 Score=54.36 Aligned_cols=37 Identities=32% Similarity=0.279 Sum_probs=27.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEe
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCV 248 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 248 (961)
..++.|+|.+|+||||++..++... ...-..+..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l--~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEeec
Confidence 3789999999999999999998854 222234555554
No 302
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.41 E-value=0.032 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+.|.|+|+.|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999873
No 303
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.40 E-value=0.032 Score=53.59 Aligned_cols=23 Identities=13% Similarity=0.436 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999998873
No 304
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.39 E-value=0.23 Score=51.74 Aligned_cols=89 Identities=21% Similarity=0.201 Sum_probs=49.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHHHHHHcCCCC---CCCCCHHHHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKAIAEALGIPS---SNLGEFQSLLKLISES 285 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~l~~~l~~~ 285 (961)
..++.++|.+|+||||++..++... ...-..+.++..... ....+.++...+..+.+. ....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998753 233335666665432 223333444555544431 1122333343333333
Q ss_pred hC-CceEEEEEeCCCC
Q 002132 286 IT-GKRFLLVLDDVWD 300 (961)
Q Consensus 286 l~-~kr~LlVlDdv~~ 300 (961)
++ +.-=++++|-.-.
T Consensus 176 ~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred HHhCCCCEEEEeCCCC
Confidence 33 2223788887643
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.34 E-value=0.042 Score=53.34 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999873
No 306
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.34 E-value=0.5 Score=52.91 Aligned_cols=39 Identities=31% Similarity=0.352 Sum_probs=27.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEe
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCV 248 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 248 (961)
...++|.|+|.+|+||||++.+++.... ..-..++-|+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~--~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ--RKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEec
Confidence 3568999999999999999999987542 22223555554
No 307
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.33 E-value=0.03 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998873
No 308
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.31 E-value=0.044 Score=59.48 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=35.2
Q ss_pred ceecccchHHHHHHHHhcC-------C--cccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 184 EICGRVGERNELLSKLLCE-------S--SEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3688888888887777210 0 000113356889999999999999999984
No 309
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.24 E-value=0.25 Score=54.36 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=29.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhc-CCeEEEEEeC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRK-FDKLLWVCVS 249 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s 249 (961)
..++|.++|.+|+||||++..++.... .. -..++-|+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~--~~~G~kVllvd~D 138 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR--EKHKKKVLVVSAD 138 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH--HTSCCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HhcCCeEEEEecC
Confidence 568999999999999999999987543 32 2345555554
No 310
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.23 E-value=0.23 Score=51.67 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=47.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCccc-HHHHHHHHHHHcCCCCC---CCCCHHHHHH-HHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFE-QFRVAKAIAEALGIPSS---NLGEFQSLLK-LISE 284 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~l~~-~l~~ 284 (961)
..+++|+|.+|+||||++..++... ...-..+.++....... ....+..+.+..+...- ...+..++.+ .+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~--~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH--HHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999998853 22223455555433221 11223344444443311 1223334433 3333
Q ss_pred HhCCceEEEEEeCC
Q 002132 285 SITGKRFLLVLDDV 298 (961)
Q Consensus 285 ~l~~kr~LlVlDdv 298 (961)
......=++|+|--
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 32233447888876
No 311
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.21 E-value=0.047 Score=52.03 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|+|+|+.|+||||+++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3478999999999999999998773
No 312
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.18 E-value=0.042 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999884
No 313
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.10 E-value=0.066 Score=55.71 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhc
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999876
No 314
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.07 E-value=0.12 Score=57.93 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcch
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
+.+.|.|.+|+||||++..+....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 388999999999999999998854
No 315
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.03 E-value=0.085 Score=49.54 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
..+++.|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998843
No 316
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.02 E-value=0.045 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHhc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47899999999999999997554
No 317
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.01 E-value=0.052 Score=53.51 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+.+||.|.|++|+||||.|+.+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998874
No 318
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.97 E-value=0.051 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.94 E-value=0.044 Score=53.66 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|+|+|+.|+|||||++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 320
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.93 E-value=0.071 Score=54.40 Aligned_cols=41 Identities=24% Similarity=0.235 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 192 RNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.++++..+...... .....+|.|+|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~~~~~~-~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 15 LARNLRSLTRGKKS-SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHTTCCC-CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCCc-ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34444444433221 345678999999999999999998773
No 321
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.91 E-value=0.11 Score=54.75 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=30.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD 250 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 250 (961)
+.+||+|.|-|||||||.+-.++-- ....-..+.-|++..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 5699999999999999999888774 333334577777664
No 322
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.90 E-value=0.25 Score=54.32 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=46.1
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc-cHHHHHHHHHHH
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF-EQFRVAKAIAEA 264 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~ 264 (961)
+.++.|..-. +-+.++|+|..|+|||+|++++.++. .+.+-+.++++-+.... .+.++..++...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 3456665433 33567999999999999999998852 23455788888887754 566777777654
No 323
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.83 E-value=0.046 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999874
No 324
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.82 E-value=0.04 Score=54.07 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998874
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.79 E-value=0.041 Score=52.81 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.++|.|+|+.|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999999998874
No 326
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.78 E-value=0.051 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|.|.|+.|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999874
No 327
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.78 E-value=0.16 Score=49.25 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.77 E-value=0.048 Score=52.80 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999884
No 329
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.75 E-value=0.057 Score=52.88 Aligned_cols=25 Identities=44% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhc
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999877
No 330
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.74 E-value=0.051 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 331
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.74 E-value=0.046 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.72 E-value=0.05 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
...+|.|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998877
No 333
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.71 E-value=0.059 Score=53.21 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|+|+|..|+|||||++.+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999998873
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.70 E-value=0.13 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcch
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
.+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998843
No 335
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.70 E-value=0.062 Score=52.67 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
...+|+|.|+.|+||||+|+.+++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999886
No 336
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.70 E-value=0.33 Score=55.04 Aligned_cols=53 Identities=9% Similarity=0.011 Sum_probs=37.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEAL 265 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 265 (961)
-.++.|.|.+|+||||||.+++.+... .+-..++|++... +.+++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~-~~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGT-AMGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTT-TSCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHH-hcCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 368899999999999999999875422 1134678877655 4567777765543
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.69 E-value=0.064 Score=52.79 Aligned_cols=24 Identities=42% Similarity=0.439 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998877
No 338
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.60 E-value=0.43 Score=50.61 Aligned_cols=53 Identities=17% Similarity=0.101 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCe-EEEEEeCCc
Q 002132 193 NELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDK-LLWVCVSDP 251 (961)
Q Consensus 193 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~ 251 (961)
-++++.+..-. +-+.++|+|.+|+|||+|++++++.... .+-+. ++++-+...
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCC
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccC
Confidence 46677776543 3356799999999999999999985422 23332 355666654
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.57 E-value=0.059 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999988763
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.56 E-value=0.043 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999873
No 341
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.50 E-value=0.055 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999874
No 342
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.50 E-value=0.19 Score=48.53 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 343
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.50 E-value=0.055 Score=53.08 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 002132 212 IISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (961)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998876
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.46 E-value=0.055 Score=52.66 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 345
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.46 E-value=0.046 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..++|.|+|+.|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998773
No 346
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.45 E-value=0.048 Score=52.03 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+|.|.|++|+||||+|+.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 347
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.45 E-value=0.063 Score=54.77 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+..+|+|.|+.|+||||+|+.+...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5578999999999999999988773
No 348
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.44 E-value=0.062 Score=55.06 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 349
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.43 E-value=0.067 Score=51.53 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999863
No 350
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.43 E-value=0.26 Score=47.86 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=33.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHH
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEA 264 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 264 (961)
.|+|-|.-|+||||.++.+++. .+.....+++..-.......+..+.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHhhc
Confidence 3778899999999999999985 44444445555554444444555555543
No 351
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.39 E-value=0.057 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998774
No 352
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.37 E-value=0.067 Score=52.57 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 353
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.31 E-value=0.18 Score=49.68 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999884
No 354
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.26 E-value=0.19 Score=65.09 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=57.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC-----CCCCHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS-----NLGEFQSLLKLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~ 283 (961)
..+++.|+|++|+|||+||.++... ....-..++|+++.+.++... ++.++.+.. ...+.++..+.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 3468999999999999999999884 334445788999888777655 455553211 1123455555555
Q ss_pred HHhC-CceEEEEEeCCC
Q 002132 284 ESIT-GKRFLLVLDDVW 299 (961)
Q Consensus 284 ~~l~-~kr~LlVlDdv~ 299 (961)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 556799999984
No 355
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.20 E-value=0.085 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.-.+++|+|+.|.|||||++.++.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999998874
No 356
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.19 E-value=0.045 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999873
No 357
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.18 E-value=0.045 Score=59.03 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=32.3
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..++|.+..++.+...+.... ..-+.|+|.+|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458998876665544443221 123889999999999999999874
No 358
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.17 E-value=0.064 Score=53.67 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999877
No 359
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.08 E-value=0.099 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5688999999999999999999875
No 360
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.01 E-value=0.055 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999998773
No 361
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.00 E-value=0.59 Score=46.80 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhH-hcC-CeEEEEEeCCcccHHHHHHHHHHHcCCCC
Q 002132 192 RNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK-RKF-DKLLWVCVSDPFEQFRVAKAIAEALGIPS 269 (961)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 269 (961)
.++++..+.. .+.+.|.|..|+||||++....-+.... ... ...+.+..........+...+...++...
T Consensus 66 q~~~i~~i~~--------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 66 ESEILEAISQ--------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HHHHHHHHHH--------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred HHHHHHHHhc--------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 4555555542 2468999999999998776554432111 111 22344444444444455555555443321
Q ss_pred C---------------CC-----CCHHHHHHHHHHHhCCceEEEEEeCCCC
Q 002132 270 S---------------NL-----GEFQSLLKLISESITGKRFLLVLDDVWD 300 (961)
Q Consensus 270 ~---------------~~-----~~~~~l~~~l~~~l~~kr~LlVlDdv~~ 300 (961)
. .. ...+.+.+.+...+.+- -+||+|+++.
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 138 GKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred CceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 0 00 12455666665544433 4789999976
No 362
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.94 E-value=0.077 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998873
No 363
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.94 E-value=0.073 Score=54.05 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
..+|+|+|+.|+|||||++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999985
No 364
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.93 E-value=0.084 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|+|+|..|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4579999999999999999998874
No 365
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.92 E-value=0.49 Score=52.63 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=37.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEAL 265 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 265 (961)
-.++.|.|.+|+||||||..++.+... ..-..++|++... +..++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECCC--CHHHHHHHHHHHH
Confidence 368899999999999999999885422 2224578877654 4567777766543
No 366
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.90 E-value=0.075 Score=51.98 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|.|.|+.|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998873
No 367
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.87 E-value=0.072 Score=51.48 Aligned_cols=25 Identities=16% Similarity=0.533 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4468999999999999999998863
No 368
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.87 E-value=0.1 Score=50.30 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 192 RNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+..+..++... ++...+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45556666431 12346899999999999999999884
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.87 E-value=0.073 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|.|.|+.|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 370
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.84 E-value=0.09 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
...+|+|.|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998877
No 371
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.84 E-value=0.056 Score=51.82 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
+.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998876
No 372
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.80 E-value=0.08 Score=52.09 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999998873
No 373
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.77 E-value=0.077 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998873
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.74 E-value=0.066 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998873
No 375
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.73 E-value=0.72 Score=51.05 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=36.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEAL 265 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 265 (961)
.-.++.|.|.+|+||||+|.+++.+...+ -..++|++... +.+++...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHHH
Confidence 34689999999999999999998864322 23577766553 4556666665543
No 376
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.67 E-value=0.095 Score=53.13 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|+|.|..|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998773
No 377
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.59 E-value=0.11 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.038 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|.|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.57 E-value=0.062 Score=51.60 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=17.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998763
No 379
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.55 E-value=0.55 Score=52.00 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=29.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCccc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFE 253 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 253 (961)
...+++|+|..|+|||||++.++... +. -...+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll--~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF--EQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH--HH-TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh--hh-cCCeEEEecCcccc
Confidence 45799999999999999999998743 22 23445554444443
No 380
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.54 E-value=0.081 Score=55.37 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...+++|+|++|+||||+++.++.-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999998743
No 381
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.41 E-value=0.082 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..|.|.|+.|+||||+|+.++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999873
No 382
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.38 E-value=0.1 Score=51.77 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..++|.|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998875
No 383
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.32 E-value=0.075 Score=52.75 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999998873
No 384
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.31 E-value=0.48 Score=50.65 Aligned_cols=110 Identities=13% Similarity=0.150 Sum_probs=60.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHH--HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQF--RVAKAIAEALGIPSSNLGEFQSLLKLISESITG 288 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~ 288 (961)
.+++|+|+.|+|||||.+.+.... .......+. .+.++.... .. ..++.+.. ...+.......+...|..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~--~~~~~~~i~-t~ed~~e~~~~~~-~~~v~q~~----~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL--NNTKYHHIL-TIEDPIEFVHESK-KCLVNQRE----VHRDTLGFSEALRSALRE 195 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH--HHHCCCEEE-EEESSCCSCCCCS-SSEEEEEE----BTTTBSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc--cCCCCcEEE-EccCcHHhhhhcc-ccceeeee----eccccCCHHHHHHHHhhh
Confidence 589999999999999999988743 222222222 222221100 00 00000000 000111234477788888
Q ss_pred ceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhhh
Q 002132 289 KRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVAS 333 (961)
Q Consensus 289 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~ 333 (961)
..=+|++|+.-+. +.++.+..... .|.-||+||.....+.
T Consensus 196 ~PdvillDEp~d~--e~~~~~~~~~~---~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 196 DPDIILVGEMRDL--ETIRLALTAAE---TGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCSEEEESCCCSH--HHHHHHHHHHH---TTCEEEEEESCSSHHH
T ss_pred CcCEEecCCCCCH--HHHHHHHHHHh---cCCEEEEEEccChHHH
Confidence 8889999999642 33444333322 3556888888766554
No 385
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.30 E-value=0.094 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
..+|+|+|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.25 E-value=0.11 Score=49.71 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|.|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 387
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.24 E-value=0.32 Score=55.90 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=53.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH-HHhC--
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLIS-ESIT-- 287 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~-~~l~-- 287 (961)
+++.|.|.+|.||||++..+..... .. ...+.+......... .+.+.++.. ......+..... ....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~--~~-g~~Vl~~ApT~~Aa~----~L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAE--SL-GLEVGLCAPTGKAAR----RLGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH--HT-TCCEEEEESSHHHHH----HHHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--hc-CCeEEEecCcHHHHH----HhHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 5788999999999999999887532 22 233444444332222 222222211 111111100000 0000
Q ss_pred ---CceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEcc
Q 002132 288 ---GKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTR 327 (961)
Q Consensus 288 ---~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 327 (961)
.+--+||+|++...+...+..+...++ .+.++|+.--
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 012389999997765555555555444 4667776543
No 388
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.20 E-value=0.086 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcch
Q 002132 212 IISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998754
No 389
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.19 E-value=0.87 Score=49.47 Aligned_cols=132 Identities=16% Similarity=0.103 Sum_probs=67.8
Q ss_pred ceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHH
Q 002132 184 EICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAE 263 (961)
Q Consensus 184 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 263 (961)
.++|....+.++.+.+..... .... |.|.|..|+|||++|+.+.... ...-...+-++++.-. ...+-.++.-
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~s--~r~~~~fv~v~~~~~~-~~~~~~elfg 210 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKLS--DRSKEPFVALNVASIP-RDIFEAELFG 210 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHHS--TTTTSCEEEEETTTSC-HHHHHHHHHC
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHhc--CCCCCCeEEEecCCCC-HHHHHHHhcC
Confidence 466777777777766654332 2334 4899999999999999887632 1122233445544322 1112222221
Q ss_pred HcCCCCCCCC-CHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEccc
Q 002132 264 ALGIPSSNLG-EFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTRK 328 (961)
Q Consensus 264 ~l~~~~~~~~-~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~ 328 (961)
.-.+...+.. .... .+.. - ..=.|+||++.+.....-..+...+..+. ...|||.||..
T Consensus 211 ~~~g~~tga~~~~~g---~~~~-a--~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 211 YEKGAFTGAVSSKEG---FFEL-A--DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp BCTTSSTTCCSCBCC---HHHH-T--TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCCCCCcccccCC---ceee-C--CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 1111111110 0000 0111 1 12367899998876555566666665421 24577877664
No 390
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.19 E-value=0.19 Score=52.88 Aligned_cols=25 Identities=36% Similarity=0.311 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|+|+|..|+|||||++.+..-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998873
No 391
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.19 E-value=0.25 Score=44.13 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=43.8
Q ss_pred ceEEecCCccc--ccchhhhccCCCcEEeecCcccccccchh-hhcccCCceeecCCcc
Q 002132 632 RYLNLSCQNIR--KLPETLCELYNLEKLYITRCLYLEELPEG-IGKLINMKHLLNYRTD 687 (961)
Q Consensus 632 r~L~L~~~~i~--~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 687 (961)
..++.+++.++ .+|..+ -.+|++|+|++|. +..+|.+ +..+++|+.|++.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47888888898 899764 3579999999998 7778764 5789999999999885
No 392
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.17 E-value=0.094 Score=51.95 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.-.+++|+|+.|+|||||++.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998763
No 393
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.15 E-value=0.18 Score=52.72 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998853
No 394
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.14 E-value=0.083 Score=49.94 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhcch
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
++++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998854
No 395
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.10 E-value=0.2 Score=52.73 Aligned_cols=39 Identities=31% Similarity=0.313 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeC
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVS 249 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 249 (961)
...+|.|+|.+|+||||++..++... ...-..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l--~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY--AELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCC
Confidence 45899999999999999999998853 3332345555543
No 396
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.06 E-value=0.12 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...+|.|.|+.|+||||+|+.+....
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998843
No 397
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.05 E-value=0.23 Score=52.28 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=31.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF 252 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 252 (961)
...++|+|+|-||+||||+|..++... ...-..++-|+.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCCCC
Confidence 456899999999999999999988854 3333457777776543
No 398
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.05 E-value=0.099 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 399
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.98 E-value=0.1 Score=51.45 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcch
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
..+|+|.|+.|+||||+|+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998843
No 400
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.97 E-value=0.66 Score=53.62 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-.+++|+|+.|.|||||++.+..-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988653
No 401
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.97 E-value=0.12 Score=53.44 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999873
No 402
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.84 E-value=0.25 Score=52.44 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=55.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCce
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSNLGEFQSLLKLISESITGKR 290 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~l~~~l~~kr 290 (961)
.+++|+|..|.|||||++.+..-. ..-...+.+.-......... + +.+..- .+ ........+...+..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~---~~~~g~i~i~~~~e~~~~~~-~---~~i~~~-~g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI---PKEERIISIEDTEEIVFKHH-K---NYTQLF-FG--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS---CTTSCEEEEESSCCCCCSSC-S---SEEEEE-CB--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---cCCCcEEEECCeeccccccc-h---hEEEEE-eC--CChhHHHHHHHHhhhCC
Confidence 478999999999999999988742 12244555543221110000 0 000000 00 11223345666777778
Q ss_pred EEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhh
Q 002132 291 FLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSV 331 (961)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~ 331 (961)
-+|++|+.-.. +.++ +...+..+ +.-+|+||.....
T Consensus 242 ~ilildE~~~~--e~~~-~l~~~~~g--~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 242 DRIILGELRSS--EAYD-FYNVLCSG--HKGTLTTLHAGSS 277 (330)
T ss_dssp SEEEECCCCST--HHHH-HHHHHHTT--CCCEEEEEECSSH
T ss_pred CEEEEcCCChH--HHHH-HHHHHhcC--CCEEEEEEcccHH
Confidence 88999998652 2333 23333332 2226666665443
No 403
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.82 E-value=0.11 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 404
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.82 E-value=0.073 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcch
Q 002132 212 IISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
+|+|.|..|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998743
No 405
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.78 E-value=0.24 Score=54.60 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=55.8
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHH-HHHhcchhhHhcCCe-EEEEEeCCcc-cHHHHHHHHHHHcCCC--
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLA-QLACNHVEVKRKFDK-LLWVCVSDPF-EQFRVAKAIAEALGIP-- 268 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~-- 268 (961)
+.++.+..-. +-+.++|+|..|+|||+|| ..+.+.. .-+. ++++-+.... ++.++...+...-...
T Consensus 151 raID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 3456665433 2345799999999999995 5777742 3453 5777777654 4556666665432111
Q ss_pred -----CCCCCCHHHH-----HHHHHHHh--CCceEEEEEeCC
Q 002132 269 -----SSNLGEFQSL-----LKLISESI--TGKRFLLVLDDV 298 (961)
Q Consensus 269 -----~~~~~~~~~l-----~~~l~~~l--~~kr~LlVlDdv 298 (961)
..+.....+. .-.+.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1111111111 11222333 589999999998
No 406
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.64 E-value=0.093 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...|.|.|+.|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 407
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.62 E-value=0.12 Score=51.27 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhc
Q 002132 212 IISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998876
No 408
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.59 E-value=0.16 Score=57.88 Aligned_cols=115 Identities=14% Similarity=0.049 Sum_probs=59.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCC---------------CCCCCC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIP---------------SSNLGE 274 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~---------------~~~~~~ 274 (961)
-.++.|+|..|+|||||++.++.... ..-..++++..... ...+...+ ..++.. .+..-+
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~--~~G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~LS 355 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH--hCCCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccCC
Confidence 36899999999999999999987432 22223556654432 22333222 112111 011123
Q ss_pred HHHHHHH-HHHHhCCceEEEEEeCCCCCCcc-----ChhhhHHhhhC-CCCCcEEEEEccch
Q 002132 275 FQSLLKL-ISESITGKRFLLVLDDVWDGDCI-----KWEPFYLCLKN-GLHGSKILVTTRKK 329 (961)
Q Consensus 275 ~~~l~~~-l~~~l~~kr~LlVlDdv~~~~~~-----~~~~l~~~l~~-~~~gs~iivTtR~~ 329 (961)
..+.++. +...+..+.-+||+|-+...+.. ....+...+.. ...|..||+||...
T Consensus 356 ~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 356 LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 3344433 44555667779999954322211 12222222221 12466788887664
No 409
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.57 E-value=0.12 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|+|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998873
No 410
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.54 E-value=0.14 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHhc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 411
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.53 E-value=0.47 Score=52.70 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=41.1
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcc-cHHHHHHHH
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPF-EQFRVAKAI 261 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 261 (961)
+.++.|..-. +-+.++|+|..|+|||+|++++++. .+-+.++++-+.... .+.+++.++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 4566665433 3356899999999999999998773 234678888887655 344555543
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.50 E-value=0.27 Score=49.02 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...+|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999854
No 413
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.49 E-value=0.12 Score=52.11 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|.|||||.+.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999876
No 414
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.47 E-value=0.38 Score=51.65 Aligned_cols=38 Identities=34% Similarity=0.515 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 192 RNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 192 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..++.+.+.... .+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 344555554322 35689999999999999999998774
No 415
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.46 E-value=0.34 Score=47.52 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=55.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC----------CCCCHHHHHH
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS----------NLGEFQSLLK 280 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~~~~l~~ 280 (961)
-.|.+.|.||+||||+|..++.... ...+ .+..+.+...-+... ..++..+..... ...++...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~-~V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~-- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGV-RVMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL-- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTC-CEEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCC-CEEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH--
Confidence 3478999999999999988888532 2233 355555554333221 112222222110 11222221
Q ss_pred HHHHHhCCceEEEEEeCCCCC------CccChhhhHHhhhCCCCCcEEEEEccch
Q 002132 281 LISESITGKRFLLVLDDVWDG------DCIKWEPFYLCLKNGLHGSKILVTTRKK 329 (961)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~------~~~~~~~l~~~l~~~~~gs~iivTtR~~ 329 (961)
+ ..+.=++|+|++-.. ....|..+...++ .|-.|+.|+.-.
T Consensus 81 -L----~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 -L----KAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp -H----HHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred -H----hcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 2 123458999987542 1224666655444 355688777644
No 416
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.45 E-value=0.33 Score=47.22 Aligned_cols=111 Identities=15% Similarity=0.035 Sum_probs=54.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHh
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS--NLGEFQSLLKLISESI 286 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~l~~~l 286 (961)
.-.+..++|..|.||||.+...+.... ...... +.+..... .+.-...+++.++.... ...+.+ .+.+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kV-li~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHA-IVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCE-EEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEE-EEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 347889999999999999988877542 223333 33332211 11112234444433211 111111 222333
Q ss_pred CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchh
Q 002132 287 TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKS 330 (961)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 330 (961)
.++--+|++|.+...+.+.. ++...+.+ .|-.||+|.++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V-~~l~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIV-EVVQVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHH-HHHHHHHH--TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHH-HHHHHHhh--CCCEEEEEecccc
Confidence 33334999999977544444 33333333 3678999998653
No 417
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.40 E-value=0.13 Score=52.31 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=27.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVS 249 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 249 (961)
-.+++|+|+.|+|||||++.++..... ..-...+++...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 368999999999999999998853211 223455666543
No 418
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.39 E-value=0.22 Score=54.27 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=56.7
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCC----eEEEEEeCCc-ccHHHHHHHHHHHcCCC
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFD----KLLWVCVSDP-FEQFRVAKAIAEALGIP 268 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~s~~-~~~~~~~~~i~~~l~~~ 268 (961)
+.++.|..-. +-+.++|+|..|+|||+|+.++++... .+-+ .++++-+... ..+.++..++.+.=...
T Consensus 140 raID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~ 212 (465)
T 3vr4_D 140 SAIDHLNTLV-----RGQKLPVFSGSGLPHKELAAQIARQAT--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAID 212 (465)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCB--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGG
T ss_pred eEEecccccc-----cCCEEEEeCCCCcChHHHHHHHHHHHH--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCcc
Confidence 3455555433 223468999999999999999988532 2223 5667766654 45566666655431111
Q ss_pred -------CCCCCCHHHH-----HHHHHHHh---CCceEEEEEeCC
Q 002132 269 -------SSNLGEFQSL-----LKLISESI---TGKRFLLVLDDV 298 (961)
Q Consensus 269 -------~~~~~~~~~l-----~~~l~~~l---~~kr~LlVlDdv 298 (961)
..+.....+. .-.+.+++ +++..||++||+
T Consensus 213 rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 213 RSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1122212211 11233443 378999999998
No 419
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.38 E-value=0.16 Score=48.97 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
....|.|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999998774
No 420
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.35 E-value=0.12 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|+|||||.+.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 421
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.34 E-value=0.13 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|+|||||++.+.-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999998876
No 422
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.32 E-value=0.23 Score=53.09 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999998853
No 423
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.31 E-value=0.13 Score=50.23 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=42.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCC---------CCCCCCCHHHHHHHH
Q 002132 212 IISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGI---------PSSNLGEFQSLLKLI 282 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~---------~~~~~~~~~~l~~~l 282 (961)
+|.|.|++|+||+|.|+.++... . ...++. -+++++-++.-+. ........+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~------g-~~~ist------GdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK------G-FVHIST------GDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------C-CEEEEH------HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH------C-CeEEcH------HHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 57899999999999999988742 1 233332 2344433221100 001122334456667
Q ss_pred HHHhCCceEEEEEeCCCC
Q 002132 283 SESITGKRFLLVLDDVWD 300 (961)
Q Consensus 283 ~~~l~~kr~LlVlDdv~~ 300 (961)
.+.+..... +|||+.-.
T Consensus 69 ~~~l~~~~~-~ilDGfPR 85 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPR 85 (206)
T ss_dssp HHHCCSSSC-EEEESCCC
T ss_pred HHhhccCCc-eEecCCch
Confidence 777765443 67898743
No 424
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.21 E-value=0.59 Score=52.18 Aligned_cols=58 Identities=16% Similarity=0.195 Sum_probs=40.5
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc-ccHHHHHHH
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP-FEQFRVAKA 260 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~ 260 (961)
+.++.|..-. +-..++|.|..|+|||+|++++++. .+-+.++++-+... ..+.+++.+
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 4566666543 3356899999999999999999884 23467888877765 344444443
No 425
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.14 E-value=0.11 Score=52.51 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|+|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999873
No 426
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.11 E-value=0.25 Score=49.88 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=29.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP 251 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 251 (961)
.++.|.|.+|+||||||.+++... ...-..++|++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 589999999999999998887643 223346888876553
No 427
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.10 E-value=0.14 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999988873
No 428
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.07 E-value=0.17 Score=53.11 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998873
No 429
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.07 E-value=0.1 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=16.0
Q ss_pred EEEEEEcCCCchHHHHHHHHh-c
Q 002132 211 HIISIVGMGGIGKTTLAQLAC-N 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~-~ 232 (961)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 430
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.03 E-value=0.29 Score=46.25 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..+++.|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999874
No 431
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.00 E-value=0.17 Score=51.83 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 208 KGLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 208 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
.+..++.+.|.||+||||++..++...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 356889999999999999999998743
No 432
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.94 E-value=0.14 Score=50.87 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+|.|.|+.|+||||+|+.+...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 433
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.93 E-value=0.37 Score=53.14 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=55.5
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHH-HHHhcchhhHhcCCe-EEEEEeCCcc-cHHHHHHHHHHHcCCC--
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLA-QLACNHVEVKRKFDK-LLWVCVSDPF-EQFRVAKAIAEALGIP-- 268 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~-- 268 (961)
+.++.+..-. +-+.++|+|..|+|||+|| ..+++.. .-+. ++++-+.+.. .+.++.+.+...=...
T Consensus 164 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred cccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 3556665433 2346799999999999995 5777742 3453 5777777654 4556666665421111
Q ss_pred -----CCCCCCHHHH-----HHHHHHHh--CCceEEEEEeCC
Q 002132 269 -----SSNLGEFQSL-----LKLISESI--TGKRFLLVLDDV 298 (961)
Q Consensus 269 -----~~~~~~~~~l-----~~~l~~~l--~~kr~LlVlDdv 298 (961)
..+.....+. .-.+.+++ +++..||++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1122111111 11222333 589999999998
No 434
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.92 E-value=0.23 Score=54.00 Aligned_cols=99 Identities=9% Similarity=0.128 Sum_probs=56.0
Q ss_pred HHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhH--------hcCC-eEEEEEeCCc-ccHHHHHHHHHHH
Q 002132 195 LLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVK--------RKFD-KLLWVCVSDP-FEQFRVAKAIAEA 264 (961)
Q Consensus 195 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~s~~-~~~~~~~~~i~~~ 264 (961)
.++.|..-. +-+.++|+|..|+|||+|+.++++..... ++-+ .++++-+... ..+.++..++.+.
T Consensus 137 aID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~ 211 (464)
T 3gqb_B 137 TIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT 211 (464)
T ss_dssp HHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT
T ss_pred eeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc
Confidence 455555433 22456899999999999999998854321 1112 5666666654 4455666655442
Q ss_pred cCC-------CCCCCCCHHHH-----HHHHHHHh---CCceEEEEEeCC
Q 002132 265 LGI-------PSSNLGEFQSL-----LKLISESI---TGKRFLLVLDDV 298 (961)
Q Consensus 265 l~~-------~~~~~~~~~~l-----~~~l~~~l---~~kr~LlVlDdv 298 (961)
=.. ...+.....+. .-.+.+++ +++..|+++||+
T Consensus 212 g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 212 GALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp SGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred ccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 100 01122222221 11233443 478999999998
No 435
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.91 E-value=0.52 Score=61.18 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=59.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC-----CCCCHHHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS-----NLGEFQSLLKLISE 284 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~~ 284 (961)
-.++.|+|.+|+||||||.+++... ...-..++|++....++... ++.++.... +..+.+++...++.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 4689999999999999999998854 33334789999888777542 556665422 22456666666665
Q ss_pred HhC-CceEEEEEeCCCCC
Q 002132 285 SIT-GKRFLLVLDDVWDG 301 (961)
Q Consensus 285 ~l~-~kr~LlVlDdv~~~ 301 (961)
..+ .+.-+||+|-+...
T Consensus 456 lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHTCCSEEEESCGGGC
T ss_pred HHHhcCCcEEEECCHHHh
Confidence 443 44569999998543
No 436
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.86 E-value=0.12 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..|.|.|+.|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999874
No 437
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.81 E-value=0.11 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|.|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998764
No 438
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.81 E-value=0.15 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999998773
No 439
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.77 E-value=0.15 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|+|||||++.++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998865
No 440
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.74 E-value=0.3 Score=49.79 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=54.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCC-cccHHHHHHHHHH--HcCCCCCCCCCHHHHHHHHHHHh
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSD-PFEQFRVAKAIAE--ALGIPSSNLGEFQSLLKLISESI 286 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~l~~~l~~~l 286 (961)
-.+++|+|+.|+|||||++.+.... ...+...+++.-.. .+-.... ..++. .++. +.. .+...+...+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~--~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl---~~~---~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI--NQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE---DTK---SFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH--HHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT---TBS---CHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC--CCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCC---CHH---HHHHHHHHHH
Confidence 4789999999999999999988742 22223444332111 0000000 00000 0000 011 2234455555
Q ss_pred CCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccchhhh
Q 002132 287 TGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKKSVA 332 (961)
Q Consensus 287 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~ 332 (961)
..+.=+|++|+.-+. .....+.... ..|.-|++||......
T Consensus 96 ~~~p~illlDEp~D~--~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 96 REDPDVIFVGEMRDL--ETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HHCCSEEEESCCCSH--HHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred hhCCCEEEeCCCCCH--HHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 555668888998632 2222222222 2466688888765543
No 441
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.70 E-value=0.2 Score=46.98 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 442
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.70 E-value=0.15 Score=52.10 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|+|||||++.++-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 443
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.67 E-value=0.15 Score=50.73 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 444
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.64 E-value=0.16 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 445
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.63 E-value=0.55 Score=46.31 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcch
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
....|.|.|..|+||||+++.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999854
No 446
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.62 E-value=0.16 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
++|.|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998873
No 447
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.62 E-value=0.53 Score=51.97 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=56.8
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHH-HHHhcchhhH----hcCC-eEEEEEeCCcc-cHHHHHHHHHHHcC
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLA-QLACNHVEVK----RKFD-KLLWVCVSDPF-EQFRVAKAIAEALG 266 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~----~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~ 266 (961)
+.++.+..-. +-+.++|+|..|+|||+|| ..+.+....- .+-+ .++++-+.+.. ++.++.+.+...=.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 3566665443 2345799999999999994 5777743210 1244 47777777654 45566666654211
Q ss_pred CC-------CCCCCCHHHH-----HHHHHHHh--CCceEEEEEeCCC
Q 002132 267 IP-------SSNLGEFQSL-----LKLISESI--TGKRFLLVLDDVW 299 (961)
Q Consensus 267 ~~-------~~~~~~~~~l-----~~~l~~~l--~~kr~LlVlDdv~ 299 (961)
.. ..+.....+. .-.+.+++ +++..||++||+.
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 11 1111111111 11122333 5899999999983
No 448
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.57 E-value=0.16 Score=49.08 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 449
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.53 E-value=0.16 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|.|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 450
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.47 E-value=0.14 Score=50.46 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998763
No 451
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.46 E-value=0.16 Score=48.77 Aligned_cols=22 Identities=45% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999874
No 452
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.44 E-value=0.16 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|+|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 453
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.43 E-value=0.61 Score=45.75 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcch
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...|.|.|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998854
No 454
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.42 E-value=0.16 Score=51.76 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|+|||||++.++-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999998876
No 455
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.41 E-value=0.55 Score=60.09 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=58.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC-----CCCCHHHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS-----NLGEFQSLLKLISE 284 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~l~~ 284 (961)
-+++.|+|.+|+||||||.+++... ...-..++|++....++.. .++.++.... ...+.+++...+..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHH
Confidence 4689999999999999999998853 3334579999988877764 2566655421 12345666666655
Q ss_pred HhC-CceEEEEEeCCCCC
Q 002132 285 SIT-GKRFLLVLDDVWDG 301 (961)
Q Consensus 285 ~l~-~kr~LlVlDdv~~~ 301 (961)
..+ .+.-+||+|-+...
T Consensus 456 lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHhcCCCEEEECCHHHh
Confidence 443 34559999998654
No 456
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.36 E-value=0.19 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.++|.|+|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999988873
No 457
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.33 E-value=0.17 Score=55.50 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=35.1
Q ss_pred CceecccchHHHHHHHHhcC--------CcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 183 EEICGRVGERNELLSKLLCE--------SSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..++|.+..++.+...+... .-......+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45788888888776665321 0000112345889999999999999999884
No 458
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.33 E-value=0.18 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|.|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999887
No 459
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.32 E-value=0.16 Score=51.88 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|.|||||++.++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999887
No 460
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.27 E-value=0.19 Score=55.02 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=57.6
Q ss_pred HHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhc--CCeEEEEEeCCc-ccHHHHHHHHHHHcCCC--
Q 002132 194 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRK--FDKLLWVCVSDP-FEQFRVAKAIAEALGIP-- 268 (961)
Q Consensus 194 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-- 268 (961)
+.++.|..-. +-+.++|+|..|+|||+|+.+++++...... =+.++++-+... ..+.++..++...=...
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 3466665433 2245688999999999999999886432111 135666666654 45666776666542111
Q ss_pred -----CCCCCCHHHH-----HHHHHHHh---CCceEEEEEeCC
Q 002132 269 -----SSNLGEFQSL-----LKLISESI---TGKRFLLVLDDV 298 (961)
Q Consensus 269 -----~~~~~~~~~l-----~~~l~~~l---~~kr~LlVlDdv 298 (961)
..+.....+. .-.+.+++ +++..||++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1111111111 11233333 479999999997
No 461
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.27 E-value=0.19 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHhc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
-.+++|+|+.|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998875
No 462
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.18 E-value=0.18 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|+|||||++.++--
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998873
No 463
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.16 E-value=0.18 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|+|||||.+.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998876
No 464
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.11 E-value=0.18 Score=51.01 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|.|||||++.++.-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998763
No 465
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.08 E-value=0.18 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...|.|.|+.|+||||+|+.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 466
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.99 E-value=0.21 Score=46.32 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998764
No 467
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.97 E-value=0.41 Score=49.09 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=28.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP 251 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 251 (961)
++|+|.|-||+||||+|..++... ...-..++-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH--HHCCCcEEEEcCCCC
Confidence 578889999999999999988754 233335777776543
No 468
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.95 E-value=0.18 Score=58.74 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=35.4
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
..++|.+..++.+...+... ..+.|+|+.|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899888888887777532 46899999999999999999884
No 469
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.92 E-value=0.19 Score=50.86 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|.|||||.+.++--
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998873
No 470
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.87 E-value=0.79 Score=45.91 Aligned_cols=103 Identities=19% Similarity=0.129 Sum_probs=53.6
Q ss_pred EEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCC--------CCCC-----CCHHHHH
Q 002132 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIP--------SSNL-----GEFQSLL 279 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~--------~~~~-----~~~~~l~ 279 (961)
+.|+|..|.|||.+|..+.... -..++++ +....-..++...+.+ ++.. .... ...+.+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv-~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-----STPTLIV-VPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-----CSCEEEE-ESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-----CCCEEEE-eCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 6789999999999998887632 1234443 3322222233333322 3221 0000 1123333
Q ss_pred HHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEc
Q 002132 280 KLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTT 326 (961)
Q Consensus 280 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 326 (961)
.... .+.++--+||+|++.......+..+...++ ...++.+|.
T Consensus 184 ~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 184 VNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred hhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3333 333445699999998876556666655443 233444443
No 471
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.86 E-value=0.2 Score=52.60 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 472
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.82 E-value=0.19 Score=51.59 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|+|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998876
No 473
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.79 E-value=0.24 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999998887
No 474
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.75 E-value=0.2 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998763
No 475
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.74 E-value=0.19 Score=48.97 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998874
No 476
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.66 E-value=0.2 Score=50.85 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998863
No 477
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.64 E-value=0.2 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|.|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999998876
No 478
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.60 E-value=0.2 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|.|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999998873
No 479
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.59 E-value=0.2 Score=55.11 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
...+|.|+|++|+||||+|+.++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998874
No 480
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.48 E-value=0.27 Score=47.16 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 481
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.40 E-value=0.64 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHhc
Q 002132 207 QKGLHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 207 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
....++..|.|.+|.||||+.++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 34678999999999999999998886
No 482
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.37 E-value=0.68 Score=46.19 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=27.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEE
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVC 247 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 247 (961)
..+|.|.|+.|+||||+++.+..... ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeec
Confidence 36899999999999999999998543 23455344444
No 483
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.35 E-value=0.57 Score=59.95 Aligned_cols=84 Identities=21% Similarity=0.229 Sum_probs=61.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCCC-----CCCHHHHHHHHH
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSSN-----LGEFQSLLKLIS 283 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~~~l~ 283 (961)
+-++|-|+|+.|+||||||.++... .++.-...+|+.+.+..++.- ++.++..... -...++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 3479999999999999999999873 556667899999998887763 7787776321 122355555555
Q ss_pred HHhC-CceEEEEEeCCC
Q 002132 284 ESIT-GKRFLLVLDDVW 299 (961)
Q Consensus 284 ~~l~-~kr~LlVlDdv~ 299 (961)
..++ +.--+||+|-|.
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 5555 455699999883
No 484
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.31 E-value=0.57 Score=46.43 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcch
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHV 234 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~ 234 (961)
...|.|.|+.|+||||+++.+++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999854
No 485
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.30 E-value=0.5 Score=49.09 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=29.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDP 251 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 251 (961)
++|+|.|-||+||||+|..++... ...-..++-|+....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~L--a~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAAL--AEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHH--HHCCCeEEEEecCCC
Confidence 678889999999999999988854 223335677776543
No 486
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.29 E-value=0.78 Score=49.42 Aligned_cols=162 Identities=14% Similarity=0.032 Sum_probs=80.7
Q ss_pred CceecccchHHHHHHHHhcCCcccCCCeEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHH
Q 002132 183 EEICGRVGERNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIA 262 (961)
Q Consensus 183 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 262 (961)
..++|....+.++...+..... ... .+.|.|..|.||+++|+.+.... ..-...+-++++.-.. ..+..++.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~---~~~-~vli~GesGtGKe~lAr~ih~~s---~r~~~fv~vnc~~~~~-~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK---SKA-PVLITGESGTGKEIVARLIHRYS---GRKGAFVDLNCASIPQ-ELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT---SCS-CEEEECCTTSSHHHHHHHHHHHH---CCCSCEEEEESSSSCT-TTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc---cch-hheEEeCCCchHHHHHHHHHHhc---cccCCcEEEEcccCCh-HHHHHHhc
Confidence 3578877777766665543221 122 36699999999999999987742 1212233344443211 11111121
Q ss_pred HHcCCCCCCCC-CHHHHHHHHHHHhCCceEEEEEeCCCCCCccChhhhHHhhhCCC-----------CCcEEEEEccchh
Q 002132 263 EALGIPSSNLG-EFQSLLKLISESITGKRFLLVLDDVWDGDCIKWEPFYLCLKNGL-----------HGSKILVTTRKKS 330 (961)
Q Consensus 263 ~~l~~~~~~~~-~~~~l~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR~~~ 330 (961)
-.-.+...+.. .... .+... .+ -.|+||++.+........+...+..+. ...|||.||...-
T Consensus 201 g~~~g~~tga~~~~~g---~~~~a-~~--gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l 274 (368)
T 3dzd_A 201 GHEKGAFTGALTRKKG---KLELA-DQ--GTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNL 274 (368)
T ss_dssp EECSCSSSSCCCCEEC---HHHHT-TT--SEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCH
T ss_pred CccccccCCcccccCC---hHhhc-CC--CeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCH
Confidence 11111111110 0000 01111 11 258999998876666667777775431 1346777665432
Q ss_pred hhhhhcc----------CCcceEEcCCCCH--HHHHHHHHH
Q 002132 331 VASMMGS----------TDTDIITVMELTE--EECWSLFKR 359 (961)
Q Consensus 331 ~~~~~~~----------~~~~~~~l~~L~~--~~~~~lf~~ 359 (961)
.. .+.. .....+.++||.+ +|...|+.+
T Consensus 275 ~~-~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~ 314 (368)
T 3dzd_A 275 EE-EIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEY 314 (368)
T ss_dssp HH-HHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHH
T ss_pred HH-HHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHH
Confidence 11 1111 1123577888877 565555443
No 487
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.29 E-value=0.16 Score=48.95 Aligned_cols=109 Identities=13% Similarity=0.022 Sum_probs=55.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHhC
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIPSS--NLGEFQSLLKLISESIT 287 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~l~~~l~ 287 (961)
-++..++|..|.||||.+...++... .......++-..-.. +.-...+++.++.... ...+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~d~---r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEIDN---RYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC----------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCc---cchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 47999999999999999988887542 233333333211111 1001112222221100 001111 2333444
Q ss_pred CceEEEEEeCCCCCCccChhhhHHhhhCCCCCcEEEEEccch
Q 002132 288 GKRFLLVLDDVWDGDCIKWEPFYLCLKNGLHGSKILVTTRKK 329 (961)
Q Consensus 288 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 329 (961)
++-=+|++|.+...+....+.+. .+.+ .|..||+|.+..
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~-~l~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVN-KIAE--SGRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHH-HHHh--CCCEEEEEeccc
Confidence 43349999998665433333333 3333 267899998865
No 488
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=88.22 E-value=2.3 Score=57.44 Aligned_cols=126 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHHHHHcCCC------------CCCCCCHHHHHH
Q 002132 213 ISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAIAEALGIP------------SSNLGEFQSLLK 280 (961)
Q Consensus 213 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~------------~~~~~~~~~l~~ 280 (961)
|.++|++|+|||++|+.+.. ...-...+.++.+...+...+.+.+-..+... .
T Consensus 1270 vLL~GPpGtGKT~la~~~l~----~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~----------- 1334 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR----NSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD----------- 1334 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH----SCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS-----------
T ss_pred EEEECCCCCCHHHHHHHHHh----cCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCC-----------
Q ss_pred HHHHHhCCceEEEEEeCCCCCCcc------ChhhhHHhhhCCC------------CCcEEEEEccchh------hhhhhc
Q 002132 281 LISESITGKRFLLVLDDVWDGDCI------KWEPFYLCLKNGL------------HGSKILVTTRKKS------VASMMG 336 (961)
Q Consensus 281 ~l~~~l~~kr~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~iivTtR~~~------~~~~~~ 336 (961)
+++.++.+||+.-...+ ..+.++..+..++ .+..+|.++-... +...+.
T Consensus 1335 -------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1335 -------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp -------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred -------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Q ss_pred cCCcceEEcCCCCHHHHHHHHHHHH
Q 002132 337 STDTDIITVMELTEEECWSLFKRLA 361 (961)
Q Consensus 337 ~~~~~~~~l~~L~~~~~~~lf~~~~ 361 (961)
.. ..++.+...+.++-..+|....
T Consensus 1408 Rr-f~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1408 RH-AAILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp TT-EEEEECCCCTTTHHHHHHHHHH
T ss_pred he-eeEEEeCCCCHHHHHHHHHHHH
No 489
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.21 E-value=0.71 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhcc
Q 002132 211 HIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
.+++|+|+.|.|||||++.+..-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 58999999999999999998763
No 490
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.18 E-value=0.52 Score=45.94 Aligned_cols=44 Identities=23% Similarity=0.198 Sum_probs=31.5
Q ss_pred EEEEEE-cCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHH
Q 002132 211 HIISIV-GMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFR 256 (961)
Q Consensus 211 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 256 (961)
++|+|+ +-||+||||+|..++... ...-..++-|+.....+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l--a~~g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL--SRSGYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEECCCCCCHHH
Confidence 577787 679999999999998854 33334677788776554443
No 491
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.12 E-value=0.22 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
...+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999998877
No 492
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.06 E-value=1.5 Score=53.08 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=67.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhcchhhHhcCC-----eEEEEEeCCc-------ccH-----------HHHHHHHHHHcCC
Q 002132 211 HIISIVGMGGIGKTTLAQLACNHVEVKRKFD-----KLLWVCVSDP-------FEQ-----------FRVAKAIAEALGI 267 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-----~~~wv~~s~~-------~~~-----------~~~~~~i~~~l~~ 267 (961)
.+++|+|..|.|||||.+.++.- .+. .++ .+.+ +.+. .++ .+-..++++.++.
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~~~~--v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECRTVY--VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSCEEE--TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcC-CCccccceeEEE--EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 58999999999999999999842 111 111 1222 2221 122 2233455666665
Q ss_pred CC-------CCCCCHHHHHHHHHHHhCCceEEEEEeCCCCC-CccChhhhHHhhhCCCCCcEEEEEccchhhhhhhc
Q 002132 268 PS-------SNLGEFQSLLKLISESITGKRFLLVLDDVWDG-DCIKWEPFYLCLKNGLHGSKILVTTRKKSVASMMG 336 (961)
Q Consensus 268 ~~-------~~~~~~~~l~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~~~~~~~ 336 (961)
.. ......+...-.|.+.+-.+.-+|+||.--.. +...-..+...+.. .|..||++|.+......+.
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~a 612 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVC 612 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHC
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhC
Confidence 31 11122223333455555566779999986442 32333445555555 4667888888877665443
No 493
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.02 E-value=0.23 Score=46.27 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhcc
Q 002132 212 IISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 212 vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 494
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.02 E-value=0.24 Score=51.47 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcc
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
-.+++|+|+.|.|||||++.+..-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 368999999999999999998873
No 495
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.99 E-value=0.58 Score=47.25 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=33.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHhcchhhHhcCCeEEEEEeCCcccHHHHHHHH
Q 002132 210 LHIISIVGMGGIGKTTLAQLACNHVEVKRKFDKLLWVCVSDPFEQFRVAKAI 261 (961)
Q Consensus 210 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 261 (961)
-.++.|.|.+|+|||++|.+++.+. ....-..+++++... +.+++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 3588999999999999999876542 233344577776654 344554443
No 496
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=87.90 E-value=1.5 Score=48.28 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=55.9
Q ss_pred HHHHHhcCCcccCCCeEEEEEEcCCCchHHHHH-HHHhcchhhHhcCC-eEEEEEeCCcc-cHHHHHHHHHHHcCCC---
Q 002132 195 LLSKLLCESSEQQKGLHIISIVGMGGIGKTTLA-QLACNHVEVKRKFD-KLLWVCVSDPF-EQFRVAKAIAEALGIP--- 268 (961)
Q Consensus 195 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~--- 268 (961)
.++.+..-. +-+.++|+|..|+|||+|| ..+.+. .+-+ .++++-+.+.. ++.++...+.+.=...
T Consensus 152 aID~l~Pig-----rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tv 222 (513)
T 3oaa_A 152 AVDSMIPIG-----RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTI 222 (513)
T ss_dssp HHHHHSCCB-----TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEE
T ss_pred eeccccccc-----cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceE
Confidence 455555433 2345789999999999996 567773 2334 36788887754 4566666655432111
Q ss_pred ----CCCCCCHHH---------HHHHHHHHhCCceEEEEEeCCC
Q 002132 269 ----SSNLGEFQS---------LLKLISESITGKRFLLVLDDVW 299 (961)
Q Consensus 269 ----~~~~~~~~~---------l~~~l~~~l~~kr~LlVlDdv~ 299 (961)
..+.....+ ..+.+++ +++..||++||+.
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 223 VVVATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 111111111 2223332 5899999999983
No 497
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=87.90 E-value=0.36 Score=53.23 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=48.7
Q ss_pred EEEEEEcCCCchHHHHH-HHHhcchhhHhcCC-eEEEEEeCCcc-cHHHHHHHHHHHcCCC-------CCCCCC------
Q 002132 211 HIISIVGMGGIGKTTLA-QLACNHVEVKRKFD-KLLWVCVSDPF-EQFRVAKAIAEALGIP-------SSNLGE------ 274 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~------ 274 (961)
+.++|+|..|+|||+|| ..+.+.. .-+ .++++-+.... .+.++...+...=... ..+...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 45789999999999995 5787753 244 35777777654 3445554443321000 111111
Q ss_pred ---HHHHHHHHHHHhCCceEEEEEeCCC
Q 002132 275 ---FQSLLKLISESITGKRFLLVLDDVW 299 (961)
Q Consensus 275 ---~~~l~~~l~~~l~~kr~LlVlDdv~ 299 (961)
.-...+.++. +++..||++||+.
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 1122333433 5999999999983
No 498
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.84 E-value=0.13 Score=53.56 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=19.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+..+|+|.|..|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998873
No 499
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.64 E-value=0.25 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhc
Q 002132 211 HIISIVGMGGIGKTTLAQLACN 232 (961)
Q Consensus 211 ~vi~I~G~gGiGKTtLa~~v~~ 232 (961)
.+++|+|+.|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5899999999999999998876
No 500
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.64 E-value=0.3 Score=46.24 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHhcc
Q 002132 209 GLHIISIVGMGGIGKTTLAQLACNH 233 (961)
Q Consensus 209 ~~~vi~I~G~gGiGKTtLa~~v~~~ 233 (961)
+...|.|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
Done!