Query 002133
Match_columns 961
No_of_seqs 745 out of 4629
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 17:15:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.7E-83 1.5E-87 754.3 47.8 789 19-915 10-849 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.7E-64 5.9E-69 632.0 55.5 681 149-912 181-910 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.3E-42 9.3E-47 370.9 18.8 275 157-441 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.3E-25 2.9E-30 283.7 24.4 375 511-915 163-567 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.6E-25 3.5E-30 283.0 23.2 371 511-919 187-595 (968)
6 KOG4194 Membrane glycoprotein 99.9 3.2E-26 6.9E-31 242.8 4.3 359 510-904 76-448 (873)
7 KOG4194 Membrane glycoprotein 99.9 1.8E-24 3.9E-29 229.6 6.3 338 509-868 99-449 (873)
8 KOG0444 Cytoskeletal regulator 99.9 5.7E-25 1.2E-29 234.4 -1.7 341 509-915 29-382 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 1.3E-24 2.8E-29 231.7 -3.8 314 510-874 53-378 (1255)
10 PLN03210 Resistant to P. syrin 99.9 1.7E-21 3.8E-26 245.7 21.3 366 509-909 555-944 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 3.8E-23 8.2E-28 210.5 -7.4 353 512-907 137-540 (565)
12 KOG0472 Leucine-rich repeat pr 99.8 8.3E-22 1.8E-26 200.8 -8.4 335 511-870 182-540 (565)
13 KOG0618 Serine/threonine phosp 99.8 7.9E-21 1.7E-25 213.3 -4.5 359 514-909 23-490 (1081)
14 KOG0618 Serine/threonine phosp 99.7 7E-18 1.5E-22 189.9 -1.1 217 628-870 242-488 (1081)
15 KOG0617 Ras suppressor protein 99.6 9E-18 2E-22 151.7 -3.9 154 511-668 32-189 (264)
16 PRK15387 E3 ubiquitin-protein 99.6 3.6E-15 7.8E-20 174.4 14.5 256 512-869 201-456 (788)
17 KOG0617 Ras suppressor protein 99.6 1.7E-17 3.7E-22 149.9 -5.3 173 523-706 22-197 (264)
18 PRK15387 E3 ubiquitin-protein 99.5 1.4E-13 3.1E-18 161.1 15.6 233 511-786 221-456 (788)
19 PRK15370 E3 ubiquitin-protein 99.5 1.3E-13 2.9E-18 162.7 12.7 138 512-664 178-316 (754)
20 KOG4237 Extracellular matrix p 99.5 2.4E-15 5.3E-20 154.0 -2.9 294 522-841 56-355 (498)
21 PRK15370 E3 ubiquitin-protein 99.4 3.1E-13 6.8E-18 159.5 11.4 228 510-786 197-426 (754)
22 KOG4237 Extracellular matrix p 99.4 9.7E-15 2.1E-19 149.7 -2.6 291 549-870 60-358 (498)
23 PRK04841 transcriptional regul 99.3 6.6E-11 1.4E-15 149.4 23.0 293 150-488 12-332 (903)
24 PRK00411 cdc6 cell division co 99.2 1.7E-09 3.7E-14 122.2 26.4 290 151-466 29-356 (394)
25 TIGR02928 orc1/cdc6 family rep 99.2 6.5E-09 1.4E-13 116.3 27.1 298 151-467 14-349 (365)
26 TIGR03015 pepcterm_ATPase puta 99.2 3.2E-09 7E-14 113.3 23.1 186 170-363 40-242 (269)
27 KOG4658 Apoptotic ATPase [Sign 99.2 1.5E-11 3.2E-16 147.7 4.7 124 512-636 545-677 (889)
28 cd00116 LRR_RI Leucine-rich re 99.1 5.1E-11 1.1E-15 131.0 5.0 150 513-664 24-205 (319)
29 PF01637 Arch_ATPase: Archaeal 99.1 4.3E-10 9.4E-15 117.4 9.7 201 154-358 1-233 (234)
30 COG2909 MalT ATP-dependent tra 99.1 9.7E-09 2.1E-13 117.1 20.5 292 149-489 16-339 (894)
31 cd00116 LRR_RI Leucine-rich re 99.1 1.2E-10 2.6E-15 128.1 5.2 155 532-690 21-201 (319)
32 PF05729 NACHT: NACHT domain 99.0 1.5E-09 3.2E-14 106.5 11.9 145 174-329 1-163 (166)
33 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.4E-15 109.8 5.3 128 557-689 17-147 (175)
34 PF14580 LRR_9: Leucine-rich r 99.0 3.1E-10 6.8E-15 109.1 5.5 134 522-659 7-147 (175)
35 KOG0532 Leucine-rich repeat (L 99.0 2.5E-11 5.5E-16 130.6 -3.6 150 513-668 99-250 (722)
36 TIGR00635 ruvB Holliday juncti 99.0 6.3E-08 1.4E-12 105.2 22.1 238 151-428 3-261 (305)
37 PRK00080 ruvB Holliday junctio 98.9 2.8E-08 6.2E-13 108.6 18.5 249 149-428 22-282 (328)
38 KOG0532 Leucine-rich repeat (L 98.9 1.3E-10 2.8E-15 125.2 -4.0 168 511-691 74-243 (722)
39 KOG1259 Nischarin, modulator o 98.8 3.2E-10 6.8E-15 112.5 -1.1 131 510-644 282-415 (490)
40 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3.1E-14 114.0 1.3 181 510-690 119-309 (505)
41 KOG1259 Nischarin, modulator o 98.8 8E-10 1.7E-14 109.7 -1.0 124 558-689 283-406 (490)
42 PTZ00112 origin recognition co 98.8 1.1E-06 2.3E-11 101.5 23.7 243 152-414 755-1029(1164)
43 KOG4341 F-box protein containi 98.8 5.6E-10 1.2E-14 116.3 -2.7 83 560-642 139-231 (483)
44 KOG3207 Beta-tubulin folding c 98.7 2E-09 4.4E-14 112.8 0.9 136 532-668 119-262 (505)
45 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.6E-13 115.4 5.2 167 512-690 116-285 (394)
46 PRK13342 recombination factor 98.7 2.4E-07 5.1E-12 104.5 14.7 179 149-361 9-198 (413)
47 COG4886 Leucine-rich repeat (L 98.6 2.9E-08 6.2E-13 112.4 5.6 103 558-662 115-219 (394)
48 COG1474 CDC6 Cdc6-related prot 98.6 3.5E-05 7.5E-10 84.2 28.0 283 154-466 19-332 (366)
49 COG2256 MGS1 ATPase related to 98.6 6.8E-07 1.5E-11 93.9 13.2 173 149-355 21-208 (436)
50 PLN03150 hypothetical protein; 98.6 1.7E-07 3.8E-12 111.0 9.5 101 561-662 420-525 (623)
51 PRK06893 DNA replication initi 98.5 1.8E-06 4E-11 88.8 15.5 152 172-359 38-203 (229)
52 COG3903 Predicted ATPase [Gene 98.5 1.8E-07 3.9E-12 99.0 7.9 289 172-489 13-315 (414)
53 PF13173 AAA_14: AAA domain 98.5 2.2E-07 4.8E-12 86.1 7.0 120 173-320 2-126 (128)
54 PRK05564 DNA polymerase III su 98.5 3.4E-06 7.3E-11 91.6 16.2 177 151-357 3-188 (313)
55 PTZ00202 tuzin; Provisional 98.5 4.3E-06 9.3E-11 89.6 16.0 163 148-328 258-433 (550)
56 PF13401 AAA_22: AAA domain; P 98.5 5.5E-07 1.2E-11 84.2 8.4 117 172-297 3-125 (131)
57 KOG4341 F-box protein containi 98.4 1.1E-08 2.4E-13 106.9 -3.8 301 582-922 138-453 (483)
58 PRK14961 DNA polymerase III su 98.4 6.1E-06 1.3E-10 91.3 17.4 193 149-356 13-217 (363)
59 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.8E-12 73.9 3.7 59 534-593 1-60 (61)
60 PRK14949 DNA polymerase III su 98.4 3E-06 6.6E-11 99.5 15.0 185 149-359 13-220 (944)
61 PLN03150 hypothetical protein; 98.4 6.5E-07 1.4E-11 106.1 9.5 108 535-643 419-531 (623)
62 PRK12402 replication factor C 98.4 4.6E-06 9.9E-11 92.3 15.8 200 149-357 12-224 (337)
63 PRK07003 DNA polymerase III su 98.4 5E-06 1.1E-10 95.8 15.7 182 149-360 13-222 (830)
64 cd01128 rho_factor Transcripti 98.4 6.6E-07 1.4E-11 92.0 7.2 93 172-265 15-115 (249)
65 PF05496 RuvB_N: Holliday junc 98.4 1.2E-05 2.6E-10 79.2 15.4 186 148-363 20-225 (233)
66 TIGR03420 DnaA_homol_Hda DnaA 98.4 3.3E-06 7.1E-11 87.4 12.4 169 157-360 22-202 (226)
67 PLN03025 replication factor C 98.4 5.5E-06 1.2E-10 90.2 14.4 185 148-356 9-197 (319)
68 PRK12323 DNA polymerase III su 98.3 4.5E-06 9.7E-11 94.9 13.6 200 149-359 13-225 (700)
69 COG3899 Predicted ATPase [Gene 98.3 1E-05 2.3E-10 98.4 17.8 268 154-431 2-332 (849)
70 PRK14963 DNA polymerase III su 98.3 1.2E-06 2.6E-11 99.8 9.1 191 149-356 11-214 (504)
71 PRK14960 DNA polymerase III su 98.3 6.8E-06 1.5E-10 93.7 14.8 178 149-356 12-216 (702)
72 PF13855 LRR_8: Leucine rich r 98.3 4E-07 8.7E-12 71.8 3.6 58 559-616 1-61 (61)
73 TIGR02903 spore_lon_C ATP-depe 98.3 2.1E-05 4.6E-10 92.5 19.0 204 150-362 152-398 (615)
74 PRK04195 replication factor C 98.3 3.5E-05 7.5E-10 88.8 20.5 185 148-363 10-206 (482)
75 PRK00440 rfc replication facto 98.3 1.3E-05 2.9E-10 87.9 16.3 182 149-356 14-200 (319)
76 cd00009 AAA The AAA+ (ATPases 98.3 4E-06 8.8E-11 80.1 10.8 59 155-215 1-59 (151)
77 KOG0531 Protein phosphatase 1, 98.3 1E-07 2.2E-12 108.0 -0.9 132 532-668 70-202 (414)
78 PF13191 AAA_16: AAA ATPase do 98.3 2E-06 4.4E-11 85.9 8.5 49 153-201 1-52 (185)
79 PRK09376 rho transcription ter 98.3 2.2E-06 4.7E-11 91.7 8.9 92 173-265 169-268 (416)
80 PRK14962 DNA polymerase III su 98.3 1.7E-05 3.8E-10 89.7 16.6 189 149-363 11-223 (472)
81 PRK14957 DNA polymerase III su 98.3 1.8E-05 3.9E-10 90.4 16.6 187 149-361 13-223 (546)
82 PRK14956 DNA polymerase III su 98.3 6.9E-06 1.5E-10 91.2 12.8 193 149-356 15-219 (484)
83 PRK06645 DNA polymerase III su 98.3 2.3E-05 5E-10 89.0 17.2 196 148-356 17-226 (507)
84 KOG2120 SCF ubiquitin ligase, 98.3 3.5E-08 7.5E-13 98.4 -5.1 83 560-663 186-271 (419)
85 PRK14964 DNA polymerase III su 98.2 1.9E-05 4E-10 88.9 15.3 181 149-356 10-214 (491)
86 KOG2120 SCF ubiquitin ligase, 98.2 5.1E-08 1.1E-12 97.2 -5.1 174 512-691 185-372 (419)
87 PRK07994 DNA polymerase III su 98.2 1.9E-05 4E-10 91.7 14.6 195 149-359 13-220 (647)
88 PRK14951 DNA polymerase III su 98.2 3.1E-05 6.8E-10 89.7 15.9 196 149-357 13-223 (618)
89 PRK07940 DNA polymerase III su 98.2 4.1E-05 8.9E-10 84.6 15.9 173 151-359 4-213 (394)
90 PRK05896 DNA polymerase III su 98.2 2.8E-05 6E-10 88.9 15.0 197 149-361 13-223 (605)
91 PF05621 TniB: Bacterial TniB 98.2 4.7E-05 1E-09 78.8 15.2 192 158-357 43-259 (302)
92 PRK13341 recombination factor 98.2 1.8E-05 3.8E-10 94.0 13.6 172 149-354 25-212 (725)
93 PRK14958 DNA polymerase III su 98.1 3.1E-05 6.6E-10 88.7 14.6 182 149-356 13-217 (509)
94 PRK08691 DNA polymerase III su 98.1 2.1E-05 4.5E-10 90.8 13.0 178 149-356 13-217 (709)
95 TIGR02397 dnaX_nterm DNA polym 98.1 7.6E-05 1.6E-09 83.2 17.5 185 149-360 11-219 (355)
96 KOG1909 Ran GTPase-activating 98.1 1.2E-06 2.6E-11 90.0 2.5 15 510-524 28-42 (382)
97 PRK09112 DNA polymerase III su 98.1 6.8E-05 1.5E-09 81.7 16.0 201 148-360 19-241 (351)
98 PRK07471 DNA polymerase III su 98.1 9.6E-05 2.1E-09 81.0 17.0 198 149-359 16-238 (365)
99 PRK09087 hypothetical protein; 98.1 4.4E-05 9.6E-10 78.0 13.3 161 151-358 20-194 (226)
100 KOG3665 ZYG-1-like serine/thre 98.1 1.3E-06 2.8E-11 102.9 2.5 149 509-658 119-281 (699)
101 KOG0531 Protein phosphatase 1, 98.1 4.6E-07 9.9E-12 102.7 -1.3 150 513-668 73-224 (414)
102 TIGR01242 26Sp45 26S proteasom 98.1 4.8E-05 1E-09 84.5 14.5 177 149-353 119-328 (364)
103 TIGR00678 holB DNA polymerase 98.1 6.5E-05 1.4E-09 75.0 14.0 160 163-355 3-187 (188)
104 PRK14955 DNA polymerase III su 98.1 3.7E-05 8E-10 86.1 13.4 200 149-356 13-225 (397)
105 TIGR00767 rho transcription te 98.1 9.9E-06 2.1E-10 87.3 8.2 93 172-265 167-267 (415)
106 PRK08084 DNA replication initi 98.0 0.00011 2.5E-09 75.8 15.6 170 152-358 22-208 (235)
107 PRK08727 hypothetical protein; 98.0 6.6E-05 1.4E-09 77.4 13.6 172 151-356 18-201 (233)
108 PRK14959 DNA polymerase III su 98.0 7.2E-05 1.6E-09 86.1 15.0 200 149-363 13-225 (624)
109 PRK09111 DNA polymerase III su 98.0 9.2E-05 2E-09 86.1 15.6 198 149-358 21-232 (598)
110 KOG0989 Replication factor C, 98.0 1.7E-05 3.7E-10 80.4 8.1 187 147-354 31-225 (346)
111 PRK14969 DNA polymerase III su 98.0 7.1E-05 1.5E-09 86.4 14.3 185 149-359 13-221 (527)
112 PRK14970 DNA polymerase III su 98.0 0.00015 3.2E-09 81.0 16.5 181 149-355 14-205 (367)
113 PF12799 LRR_4: Leucine Rich r 98.0 5.7E-06 1.2E-10 59.5 3.3 37 560-596 2-38 (44)
114 KOG2982 Uncharacterized conser 98.0 1.2E-06 2.5E-11 87.7 -0.5 81 556-636 68-155 (418)
115 KOG2227 Pre-initiation complex 98.0 0.00069 1.5E-08 73.0 20.0 197 150-353 148-362 (529)
116 KOG2028 ATPase related to the 98.0 4.1E-05 8.9E-10 79.0 10.3 174 151-354 137-331 (554)
117 PRK07764 DNA polymerase III su 98.0 0.00012 2.7E-09 88.0 15.8 177 149-356 12-218 (824)
118 PRK14954 DNA polymerase III su 97.9 0.00015 3.3E-09 84.4 15.5 202 149-358 13-228 (620)
119 PRK07133 DNA polymerase III su 97.9 0.00018 4E-09 84.1 15.8 182 149-360 15-221 (725)
120 KOG1859 Leucine-rich repeat pr 97.9 3.3E-07 7.2E-12 102.0 -6.2 122 560-690 165-287 (1096)
121 PRK03992 proteasome-activating 97.9 0.00011 2.4E-09 81.9 13.6 179 150-353 129-337 (389)
122 PRK14952 DNA polymerase III su 97.9 0.00017 3.7E-09 83.4 15.4 198 149-362 10-223 (584)
123 PRK14971 DNA polymerase III su 97.9 0.00027 5.8E-09 83.0 16.9 181 149-356 14-219 (614)
124 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00014 3E-09 88.8 15.0 182 149-352 184-389 (852)
125 PRK14950 DNA polymerase III su 97.9 0.00032 6.9E-09 82.6 17.3 196 149-358 13-220 (585)
126 PRK06305 DNA polymerase III su 97.9 0.00028 6E-09 80.0 16.1 180 149-359 14-223 (451)
127 KOG1909 Ran GTPase-activating 97.9 1.2E-05 2.5E-10 82.9 4.2 177 532-711 90-310 (382)
128 PRK08451 DNA polymerase III su 97.9 0.00038 8.2E-09 79.3 16.4 184 149-359 11-218 (535)
129 PRK14087 dnaA chromosomal repl 97.8 0.00018 3.8E-09 81.5 13.8 168 173-361 141-321 (450)
130 PHA02544 44 clamp loader, smal 97.8 0.00015 3.2E-09 79.3 12.4 149 148-327 17-171 (316)
131 PRK05642 DNA replication initi 97.8 0.0003 6.6E-09 72.6 13.8 150 174-358 46-207 (234)
132 PF00308 Bac_DnaA: Bacterial d 97.8 0.00017 3.6E-09 73.5 11.6 158 173-357 34-206 (219)
133 KOG4579 Leucine-rich repeat (L 97.8 2E-06 4.2E-11 76.2 -2.2 110 512-622 27-141 (177)
134 PRK14948 DNA polymerase III su 97.8 0.00052 1.1E-08 80.6 16.9 198 149-359 13-222 (620)
135 PRK14953 DNA polymerase III su 97.8 0.00055 1.2E-08 78.1 16.8 181 149-359 13-220 (486)
136 TIGR02639 ClpA ATP-dependent C 97.8 0.00024 5.2E-09 86.2 14.7 159 150-329 180-358 (731)
137 TIGR03689 pup_AAA proteasome A 97.8 0.00043 9.3E-09 78.4 15.4 164 149-331 179-380 (512)
138 PRK08903 DnaA regulatory inact 97.8 0.00025 5.4E-09 73.3 12.6 174 151-363 17-203 (227)
139 CHL00095 clpC Clp protease ATP 97.8 0.0003 6.6E-09 86.4 14.9 158 150-328 177-353 (821)
140 KOG3665 ZYG-1-like serine/thre 97.8 1.8E-05 3.8E-10 93.5 3.9 130 533-663 121-261 (699)
141 KOG1859 Leucine-rich repeat pr 97.7 6.1E-07 1.3E-11 100.0 -7.7 124 510-637 162-289 (1096)
142 PF12799 LRR_4: Leucine Rich r 97.7 3.6E-05 7.9E-10 55.4 4.0 32 605-636 2-33 (44)
143 KOG2543 Origin recognition com 97.7 0.00035 7.7E-09 73.2 12.7 170 152-328 6-192 (438)
144 PF14516 AAA_35: AAA-like doma 97.7 0.0024 5.3E-08 69.6 19.8 210 149-366 8-246 (331)
145 PRK11331 5-methylcytosine-spec 97.7 0.00016 3.5E-09 79.5 10.4 110 151-265 174-284 (459)
146 PRK15386 type III secretion pr 97.7 6.5E-05 1.4E-09 81.5 7.3 79 747-849 51-131 (426)
147 TIGR02881 spore_V_K stage V sp 97.7 0.00031 6.8E-09 74.1 12.2 134 173-330 42-192 (261)
148 PRK06647 DNA polymerase III su 97.7 0.00079 1.7E-08 78.1 16.2 193 149-356 13-217 (563)
149 KOG1644 U2-associated snRNP A' 97.7 5.1E-05 1.1E-09 72.3 5.1 101 533-636 41-149 (233)
150 PRK14965 DNA polymerase III su 97.7 0.0005 1.1E-08 80.5 14.3 198 149-361 13-223 (576)
151 PRK05563 DNA polymerase III su 97.7 0.0011 2.3E-08 77.4 16.9 193 149-356 13-217 (559)
152 CHL00181 cbbX CbbX; Provisiona 97.7 0.00095 2.1E-08 70.9 15.1 132 175-330 61-210 (287)
153 TIGR02880 cbbX_cfxQ probable R 97.7 0.00062 1.3E-08 72.4 13.7 132 175-330 60-209 (284)
154 PTZ00361 26 proteosome regulat 97.6 0.0012 2.6E-08 73.8 15.4 181 149-353 180-389 (438)
155 KOG2982 Uncharacterized conser 97.6 4.3E-05 9.2E-10 76.9 3.0 56 581-636 70-130 (418)
156 PF05659 RPW8: Arabidopsis bro 97.6 0.00054 1.2E-08 63.9 10.1 112 2-129 3-114 (147)
157 PRK07399 DNA polymerase III su 97.6 0.0019 4.1E-08 69.4 15.7 197 151-359 3-221 (314)
158 KOG1644 U2-associated snRNP A' 97.5 0.00015 3.2E-09 69.3 5.6 103 511-614 41-150 (233)
159 PTZ00454 26S protease regulato 97.5 0.0033 7.1E-08 69.9 16.9 181 149-353 142-351 (398)
160 PRK15386 type III secretion pr 97.5 0.00043 9.3E-09 75.3 9.1 131 511-662 51-187 (426)
161 PRK11034 clpA ATP-dependent Cl 97.5 0.00071 1.5E-08 81.0 11.7 158 151-329 185-362 (758)
162 KOG4579 Leucine-rich repeat (L 97.4 1.4E-05 3.1E-10 70.9 -1.9 80 557-636 51-132 (177)
163 PRK14088 dnaA chromosomal repl 97.4 0.0016 3.4E-08 73.9 13.5 160 173-356 130-302 (440)
164 COG1373 Predicted ATPase (AAA+ 97.4 0.0012 2.6E-08 73.6 12.4 136 157-324 22-162 (398)
165 PRK10865 protein disaggregatio 97.4 0.0012 2.5E-08 81.1 13.3 50 149-198 175-224 (857)
166 PRK05707 DNA polymerase III su 97.4 0.004 8.6E-08 67.4 15.6 155 173-359 22-203 (328)
167 COG2255 RuvB Holliday junction 97.4 0.0052 1.1E-07 62.2 14.9 186 148-363 22-227 (332)
168 TIGR00362 DnaA chromosomal rep 97.4 0.0027 5.8E-08 71.8 15.0 160 173-356 136-307 (405)
169 TIGR03346 chaperone_ClpB ATP-d 97.4 0.0023 5E-08 79.0 15.3 158 150-329 171-349 (852)
170 PRK14086 dnaA chromosomal repl 97.3 0.0029 6.3E-08 72.8 14.2 157 174-354 315-483 (617)
171 TIGR00763 lon ATP-dependent pr 97.3 0.0057 1.2E-07 74.8 17.7 47 152-198 320-372 (775)
172 PRK00149 dnaA chromosomal repl 97.3 0.0034 7.3E-08 72.0 14.8 160 173-356 148-319 (450)
173 PRK12608 transcription termina 97.3 0.0023 5.1E-08 68.9 12.2 104 161-265 120-232 (380)
174 TIGR01241 FtsH_fam ATP-depende 97.3 0.0075 1.6E-07 70.0 17.5 182 148-353 51-260 (495)
175 TIGR00602 rad24 checkpoint pro 97.3 0.00076 1.6E-08 78.6 9.1 53 146-198 78-135 (637)
176 PRK06620 hypothetical protein; 97.3 0.00092 2E-08 67.7 8.3 134 174-356 45-186 (214)
177 PRK08118 topology modulation p 97.2 0.00018 3.9E-09 69.9 2.6 35 174-208 2-37 (167)
178 COG1222 RPT1 ATP-dependent 26S 97.2 0.03 6.5E-07 58.8 18.5 199 151-379 150-393 (406)
179 smart00382 AAA ATPases associa 97.2 0.0011 2.4E-08 62.6 7.9 90 174-267 3-92 (148)
180 CHL00176 ftsH cell division pr 97.2 0.0054 1.2E-07 72.2 14.9 175 150-352 181-387 (638)
181 PF00004 AAA: ATPase family as 97.2 0.00074 1.6E-08 62.9 6.2 69 176-265 1-70 (132)
182 PRK08058 DNA polymerase III su 97.1 0.0064 1.4E-07 66.3 14.0 146 153-327 6-180 (329)
183 COG3267 ExeA Type II secretory 97.1 0.025 5.4E-07 56.8 16.5 194 159-361 38-247 (269)
184 COG0466 Lon ATP-dependent Lon 97.1 0.0034 7.3E-08 71.6 11.8 159 155-329 326-508 (782)
185 KOG2123 Uncharacterized conser 97.1 3.3E-05 7.2E-10 76.9 -3.5 100 558-658 18-123 (388)
186 PF05673 DUF815: Protein of un 97.1 0.018 4E-07 58.0 15.3 54 148-201 23-80 (249)
187 PRK12422 chromosomal replicati 97.1 0.011 2.3E-07 67.0 15.1 154 173-352 141-306 (445)
188 PHA00729 NTP-binding motif con 97.1 0.0028 6E-08 63.6 9.1 36 163-198 7-42 (226)
189 PF13177 DNA_pol3_delta2: DNA 97.0 0.0047 1E-07 59.7 10.5 136 156-317 1-162 (162)
190 PRK08116 hypothetical protein; 97.0 0.0016 3.5E-08 68.5 7.9 75 174-264 115-189 (268)
191 PRK06090 DNA polymerase III su 97.0 0.041 8.9E-07 59.0 18.4 180 160-378 11-217 (319)
192 PRK08769 DNA polymerase III su 97.0 0.018 3.9E-07 61.8 15.7 174 159-360 11-209 (319)
193 KOG0991 Replication factor C, 97.0 0.0014 3.1E-08 63.7 6.3 70 148-217 23-92 (333)
194 PRK10787 DNA-binding ATP-depen 97.0 0.016 3.5E-07 70.2 16.8 163 152-329 322-506 (784)
195 KOG2739 Leucine-rich acidic nu 97.0 0.00034 7.5E-09 69.9 2.0 81 581-664 42-128 (260)
196 PF00448 SRP54: SRP54-type pro 97.0 0.004 8.6E-08 62.0 9.5 88 173-262 1-92 (196)
197 PRK06871 DNA polymerase III su 97.0 0.024 5.3E-07 60.9 16.0 177 160-356 10-200 (325)
198 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0083 1.8E-07 68.3 12.5 182 151-353 227-429 (489)
199 PF04665 Pox_A32: Poxvirus A32 96.9 0.0029 6.4E-08 64.1 7.5 35 175-211 15-49 (241)
200 TIGR02237 recomb_radB DNA repa 96.8 0.0045 9.7E-08 63.0 8.8 89 172-264 11-108 (209)
201 PRK12727 flagellar biosynthesi 96.8 0.04 8.8E-07 62.2 16.7 89 172-263 349-438 (559)
202 KOG1947 Leucine rich repeat pr 96.8 0.00032 6.9E-09 82.0 0.3 41 834-874 403-443 (482)
203 COG5238 RNA1 Ran GTPase-activa 96.8 0.00048 1E-08 68.6 1.4 21 827-848 298-318 (388)
204 KOG2004 Mitochondrial ATP-depe 96.8 0.018 3.8E-07 65.6 13.3 98 153-265 412-517 (906)
205 PF10443 RNA12: RNA12 protein; 96.8 0.077 1.7E-06 58.0 17.7 195 157-368 1-288 (431)
206 cd01393 recA_like RecA is a b 96.8 0.0096 2.1E-07 61.4 10.7 92 172-264 18-125 (226)
207 COG1223 Predicted ATPase (AAA+ 96.7 0.018 3.9E-07 57.4 11.4 154 151-330 120-298 (368)
208 TIGR02639 ClpA ATP-dependent C 96.7 0.01 2.2E-07 72.2 11.7 103 152-265 454-565 (731)
209 KOG0733 Nuclear AAA ATPase (VC 96.7 0.046 1E-06 61.2 15.3 94 151-265 189-294 (802)
210 KOG0741 AAA+-type ATPase [Post 96.6 0.029 6.3E-07 61.6 13.3 152 172-349 537-704 (744)
211 COG0593 DnaA ATPase involved i 96.6 0.025 5.4E-07 62.0 13.1 132 172-330 112-258 (408)
212 TIGR01243 CDC48 AAA family ATP 96.6 0.051 1.1E-06 66.5 17.5 176 150-353 451-657 (733)
213 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0056 1.2E-07 63.7 8.0 92 172-264 18-126 (235)
214 TIGR02012 tigrfam_recA protein 96.6 0.0093 2E-07 63.7 9.3 87 172-265 54-145 (321)
215 KOG2739 Leucine-rich acidic nu 96.6 0.0011 2.4E-08 66.4 2.1 81 557-637 63-153 (260)
216 COG2812 DnaX DNA polymerase II 96.6 0.015 3.2E-07 65.8 11.2 190 149-353 13-214 (515)
217 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0035 7.5E-08 67.3 5.9 47 153-199 52-104 (361)
218 KOG2123 Uncharacterized conser 96.6 0.00019 4.1E-09 71.7 -3.3 107 580-689 17-124 (388)
219 COG0542 clpA ATP-binding subun 96.6 0.0093 2E-07 70.2 9.8 168 149-329 167-346 (786)
220 PRK07993 DNA polymerase III su 96.5 0.059 1.3E-06 58.6 15.2 165 160-357 10-202 (334)
221 PRK07261 topology modulation p 96.5 0.0044 9.6E-08 60.5 6.0 34 175-208 2-36 (171)
222 cd00983 recA RecA is a bacter 96.5 0.011 2.3E-07 63.3 9.2 86 172-264 54-144 (325)
223 TIGR03499 FlhF flagellar biosy 96.5 0.015 3.2E-07 61.8 10.4 87 172-262 193-281 (282)
224 PRK12377 putative replication 96.5 0.0098 2.1E-07 61.4 8.6 75 172-264 100-174 (248)
225 PRK08939 primosomal protein Dn 96.5 0.089 1.9E-06 56.4 16.2 91 156-265 135-229 (306)
226 PRK09354 recA recombinase A; P 96.5 0.012 2.6E-07 63.4 9.4 86 172-264 59-149 (349)
227 COG0542 clpA ATP-binding subun 96.5 0.045 9.8E-07 64.6 14.8 105 152-265 491-605 (786)
228 PRK14722 flhF flagellar biosyn 96.5 0.015 3.3E-07 63.4 10.2 88 173-263 137-225 (374)
229 PRK06964 DNA polymerase III su 96.5 0.093 2E-06 56.9 16.1 92 252-359 131-225 (342)
230 PF13207 AAA_17: AAA domain; P 96.4 0.0027 5.9E-08 58.1 3.7 24 175-198 1-24 (121)
231 KOG1969 DNA replication checkp 96.4 0.007 1.5E-07 69.0 7.0 75 172-265 325-399 (877)
232 PRK11889 flhF flagellar biosyn 96.4 0.033 7.1E-07 60.4 11.6 90 172-264 240-331 (436)
233 KOG0652 26S proteasome regulat 96.3 0.42 9.1E-06 47.8 18.1 48 151-198 170-230 (424)
234 TIGR01243 CDC48 AAA family ATP 96.3 0.039 8.5E-07 67.4 13.9 178 150-355 176-383 (733)
235 PRK09361 radB DNA repair and r 96.3 0.014 3.1E-07 60.1 8.6 46 172-220 22-67 (225)
236 COG1484 DnaC DNA replication p 96.3 0.021 4.7E-07 59.4 9.8 76 172-265 104-179 (254)
237 PRK07952 DNA replication prote 96.3 0.023 5.1E-07 58.4 9.9 89 160-265 84-174 (244)
238 TIGR02238 recomb_DMC1 meiotic 96.3 0.016 3.5E-07 62.2 9.1 92 172-264 95-202 (313)
239 PRK04132 replication factor C 96.3 0.065 1.4E-06 64.7 14.8 152 181-357 574-729 (846)
240 TIGR03345 VI_ClpV1 type VI sec 96.2 0.0073 1.6E-07 74.0 6.7 106 152-265 566-680 (852)
241 PF13306 LRR_5: Leucine rich r 96.2 0.0096 2.1E-07 55.1 6.1 56 532-590 10-66 (129)
242 cd01120 RecA-like_NTPases RecA 96.2 0.029 6.3E-07 54.3 9.8 40 175-216 1-40 (165)
243 TIGR02640 gas_vesic_GvpN gas v 96.2 0.067 1.4E-06 56.4 13.0 55 160-221 10-64 (262)
244 PRK00771 signal recognition pa 96.2 0.024 5.3E-07 63.5 10.1 88 172-263 94-185 (437)
245 KOG0739 AAA+-type ATPase [Post 96.2 0.055 1.2E-06 55.1 11.3 94 151-265 132-237 (439)
246 KOG0731 AAA+-type ATPase conta 96.2 0.15 3.2E-06 60.0 16.4 184 151-356 310-521 (774)
247 cd01133 F1-ATPase_beta F1 ATP 96.1 0.045 9.7E-07 56.9 11.1 92 173-265 69-175 (274)
248 PRK05541 adenylylsulfate kinas 96.1 0.014 3E-07 57.5 7.1 37 172-210 6-42 (176)
249 COG0470 HolB ATPase involved i 96.1 0.045 9.7E-07 60.1 12.0 140 154-317 3-169 (325)
250 KOG0744 AAA+-type ATPase [Post 96.1 0.02 4.4E-07 59.0 8.1 83 173-265 177-262 (423)
251 KOG1947 Leucine rich repeat pr 96.1 0.0016 3.4E-08 76.2 0.1 123 773-912 241-368 (482)
252 PRK06696 uridine kinase; Valid 96.1 0.0086 1.9E-07 61.5 5.6 44 156-199 2-48 (223)
253 KOG0735 AAA+-type ATPase [Post 96.1 0.052 1.1E-06 61.9 11.7 159 174-352 432-608 (952)
254 PF08423 Rad51: Rad51; InterP 96.0 0.028 6E-07 58.8 9.1 91 173-264 38-144 (256)
255 PRK04296 thymidine kinase; Pro 96.0 0.0072 1.6E-07 60.1 4.6 111 174-299 3-117 (190)
256 TIGR01425 SRP54_euk signal rec 96.0 0.32 7E-06 54.2 17.7 58 172-231 99-157 (429)
257 KOG0736 Peroxisome assembly fa 96.0 0.055 1.2E-06 62.4 11.7 99 146-265 666-776 (953)
258 PRK12724 flagellar biosynthesi 96.0 0.029 6.3E-07 61.7 9.3 85 173-262 223-308 (432)
259 TIGR01069 mutS2 MutS2 family p 96.0 0.016 3.5E-07 70.1 8.0 193 171-380 320-522 (771)
260 PF13306 LRR_5: Leucine rich r 96.0 0.016 3.5E-07 53.6 6.4 106 550-661 3-112 (129)
261 CHL00095 clpC Clp protease ATP 96.0 0.02 4.4E-07 70.5 9.0 106 152-265 509-623 (821)
262 TIGR03346 chaperone_ClpB ATP-d 96.0 0.015 3.3E-07 71.9 7.8 106 152-265 565-679 (852)
263 PRK09270 nucleoside triphospha 95.9 0.068 1.5E-06 55.1 11.5 30 171-200 31-60 (229)
264 COG1618 Predicted nucleotide k 95.9 0.011 2.4E-07 54.7 4.7 30 174-204 6-35 (179)
265 PRK04301 radA DNA repair and r 95.9 0.038 8.3E-07 60.1 9.9 58 172-230 101-162 (317)
266 cd03115 SRP The signal recogni 95.9 0.045 9.6E-07 53.7 9.5 87 175-263 2-92 (173)
267 TIGR02236 recomb_radA DNA repa 95.9 0.04 8.7E-07 59.8 10.0 58 172-230 94-155 (310)
268 PLN03187 meiotic recombination 95.9 0.036 7.8E-07 60.0 9.4 92 172-264 125-232 (344)
269 PRK08181 transposase; Validate 95.9 0.018 3.9E-07 60.2 6.8 75 172-265 105-179 (269)
270 PRK10865 protein disaggregatio 95.9 0.023 4.9E-07 70.1 8.8 106 152-265 568-682 (857)
271 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.06 1.3E-06 55.8 10.7 49 172-224 20-68 (237)
272 TIGR02239 recomb_RAD51 DNA rep 95.9 0.029 6.3E-07 60.5 8.5 59 172-231 95-157 (316)
273 PF07693 KAP_NTPase: KAP famil 95.9 0.36 7.9E-06 52.9 17.6 43 158-200 2-47 (325)
274 PLN03186 DNA repair protein RA 95.8 0.031 6.6E-07 60.7 8.7 92 172-264 122-229 (342)
275 PRK15455 PrkA family serine pr 95.8 0.013 2.8E-07 66.2 5.8 48 151-198 75-128 (644)
276 COG0468 RecA RecA/RadA recombi 95.8 0.074 1.6E-06 55.5 10.8 90 171-263 58-151 (279)
277 KOG0734 AAA+-type ATPase conta 95.8 0.025 5.4E-07 62.2 7.4 94 151-265 303-408 (752)
278 KOG2228 Origin recognition com 95.8 0.15 3.2E-06 53.3 12.5 169 152-330 24-220 (408)
279 PRK14974 cell division protein 95.8 0.11 2.3E-06 56.3 12.3 91 172-264 139-233 (336)
280 PRK10867 signal recognition pa 95.7 0.063 1.4E-06 60.1 10.7 92 171-263 98-193 (433)
281 PRK12726 flagellar biosynthesi 95.7 0.073 1.6E-06 57.6 10.6 90 172-264 205-296 (407)
282 PRK06526 transposase; Provisio 95.7 0.022 4.8E-07 59.2 6.7 75 172-265 97-171 (254)
283 PRK06921 hypothetical protein; 95.7 0.049 1.1E-06 57.3 9.3 71 172-262 116-186 (266)
284 PRK05703 flhF flagellar biosyn 95.7 0.04 8.8E-07 61.9 9.1 86 173-262 221-308 (424)
285 TIGR00064 ftsY signal recognit 95.6 0.097 2.1E-06 55.2 11.0 90 171-263 70-164 (272)
286 PTZ00035 Rad51 protein; Provis 95.6 0.062 1.4E-06 58.5 9.9 92 172-264 117-224 (337)
287 PTZ00494 tuzin-like protein; P 95.6 0.22 4.9E-06 54.1 13.5 163 149-329 368-544 (664)
288 KOG0743 AAA+-type ATPase [Post 95.6 1.4 3.1E-05 48.4 19.8 155 176-366 238-417 (457)
289 PRK12723 flagellar biosynthesi 95.6 0.069 1.5E-06 58.9 10.2 90 172-264 173-265 (388)
290 cd01394 radB RadB. The archaea 95.6 0.045 9.7E-07 56.1 8.4 43 172-216 18-60 (218)
291 PF00154 RecA: recA bacterial 95.6 0.034 7.3E-07 59.2 7.5 87 172-265 52-143 (322)
292 COG1066 Sms Predicted ATP-depe 95.6 0.058 1.3E-06 57.9 9.1 87 173-265 93-180 (456)
293 PLN00020 ribulose bisphosphate 95.6 0.036 7.8E-07 59.3 7.5 29 171-199 146-174 (413)
294 PRK08533 flagellar accessory p 95.5 0.095 2.1E-06 53.9 10.6 54 172-230 23-76 (230)
295 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.07 1.5E-06 56.0 9.6 41 172-214 35-75 (259)
296 PRK04328 hypothetical protein; 95.5 0.064 1.4E-06 56.0 9.3 41 172-214 22-62 (249)
297 PRK10536 hypothetical protein; 95.5 0.04 8.7E-07 56.3 7.3 57 150-208 53-109 (262)
298 PRK06547 hypothetical protein; 95.4 0.021 4.6E-07 55.6 5.1 36 163-198 5-40 (172)
299 KOG1514 Origin recognition com 95.4 0.83 1.8E-05 52.7 18.1 110 152-265 396-520 (767)
300 TIGR00959 ffh signal recogniti 95.4 0.098 2.1E-06 58.6 10.9 91 172-263 98-192 (428)
301 COG5238 RNA1 Ran GTPase-activa 95.4 0.035 7.6E-07 55.8 6.4 132 532-664 90-254 (388)
302 KOG0733 Nuclear AAA ATPase (VC 95.4 0.06 1.3E-06 60.4 8.8 132 173-330 545-693 (802)
303 PRK06067 flagellar accessory p 95.4 0.11 2.3E-06 53.9 10.5 87 172-263 24-130 (234)
304 KOG0730 AAA+-type ATPase [Post 95.3 0.43 9.3E-06 54.6 15.3 157 150-332 432-618 (693)
305 cd01121 Sms Sms (bacterial rad 95.3 0.059 1.3E-06 59.3 8.5 87 173-264 82-169 (372)
306 PRK13531 regulatory ATPase Rav 95.3 0.03 6.5E-07 62.6 6.1 51 152-204 20-70 (498)
307 PRK09183 transposase/IS protei 95.3 0.065 1.4E-06 56.1 8.4 27 173-199 102-128 (259)
308 KOG2035 Replication factor C, 95.2 0.59 1.3E-05 47.6 14.3 208 153-381 14-261 (351)
309 PF02562 PhoH: PhoH-like prote 95.2 0.031 6.6E-07 55.6 5.5 53 156-210 4-56 (205)
310 PF01695 IstB_IS21: IstB-like 95.2 0.056 1.2E-06 53.0 7.4 75 172-265 46-120 (178)
311 PF06745 KaiC: KaiC; InterPro 95.2 0.041 8.9E-07 56.7 6.8 90 172-265 18-127 (226)
312 PRK07667 uridine kinase; Provi 95.2 0.028 6.1E-07 56.1 5.3 38 162-199 4-43 (193)
313 KOG0728 26S proteasome regulat 95.2 0.54 1.2E-05 46.8 13.7 138 171-329 179-331 (404)
314 PF13481 AAA_25: AAA domain; P 95.2 0.12 2.5E-06 51.8 9.8 90 174-265 33-153 (193)
315 PRK06835 DNA replication prote 95.2 0.13 2.8E-06 55.7 10.5 37 173-211 183-219 (329)
316 PF00560 LRR_1: Leucine Rich R 95.2 0.0082 1.8E-07 35.8 0.7 21 605-625 1-21 (22)
317 COG0464 SpoVK ATPases of the A 95.1 0.32 6.8E-06 56.8 14.5 140 172-332 275-426 (494)
318 PF00485 PRK: Phosphoribulokin 95.1 0.02 4.4E-07 57.3 3.8 25 175-199 1-25 (194)
319 cd02025 PanK Pantothenate kina 95.1 0.11 2.4E-06 52.9 9.3 41 175-215 1-41 (220)
320 PF07728 AAA_5: AAA domain (dy 95.1 0.044 9.6E-07 51.4 5.9 43 176-223 2-44 (139)
321 PRK06995 flhF flagellar biosyn 95.0 0.12 2.5E-06 58.5 10.1 88 173-263 256-344 (484)
322 PF00560 LRR_1: Leucine Rich R 95.0 0.0088 1.9E-07 35.7 0.6 21 560-580 1-21 (22)
323 cd01124 KaiC KaiC is a circadi 95.0 0.071 1.5E-06 53.0 7.7 44 176-223 2-45 (187)
324 PF13238 AAA_18: AAA domain; P 95.0 0.02 4.3E-07 52.9 3.3 22 176-197 1-22 (129)
325 PRK14723 flhF flagellar biosyn 95.0 0.19 4.2E-06 59.8 11.9 88 173-263 185-273 (767)
326 PRK07132 DNA polymerase III su 94.9 0.74 1.6E-05 49.1 15.3 167 161-358 5-184 (299)
327 COG4088 Predicted nucleotide k 94.9 0.081 1.7E-06 51.1 7.1 27 174-200 2-28 (261)
328 COG0563 Adk Adenylate kinase a 94.9 0.036 7.8E-07 54.1 5.0 25 175-199 2-26 (178)
329 cd02019 NK Nucleoside/nucleoti 94.9 0.024 5.1E-07 45.7 3.1 23 175-197 1-23 (69)
330 PRK14721 flhF flagellar biosyn 94.9 0.19 4.2E-06 55.9 11.2 88 172-262 190-278 (420)
331 cd01135 V_A-ATPase_B V/A-type 94.9 0.21 4.6E-06 51.8 10.6 93 173-265 69-178 (276)
332 cd01131 PilT Pilus retraction 94.8 0.026 5.7E-07 56.6 3.9 109 174-300 2-111 (198)
333 COG1102 Cmk Cytidylate kinase 94.8 0.037 8E-07 51.3 4.4 45 175-232 2-46 (179)
334 PRK10733 hflB ATP-dependent me 94.8 0.22 4.8E-06 59.6 12.2 155 174-352 186-356 (644)
335 PRK05480 uridine/cytidine kina 94.8 0.027 5.9E-07 57.2 4.0 27 171-197 4-30 (209)
336 TIGR01359 UMP_CMP_kin_fam UMP- 94.8 0.031 6.6E-07 55.5 4.3 24 175-198 1-24 (183)
337 COG1419 FlhF Flagellar GTP-bin 94.8 0.29 6.2E-06 53.2 11.7 88 172-263 202-291 (407)
338 PRK11034 clpA ATP-dependent Cl 94.8 0.065 1.4E-06 64.5 7.7 102 153-265 459-569 (758)
339 KOG3864 Uncharacterized conser 94.8 0.0073 1.6E-07 58.1 -0.3 71 797-873 121-191 (221)
340 COG2607 Predicted ATPase (AAA+ 94.7 0.37 7.9E-06 48.0 11.1 52 149-200 57-112 (287)
341 TIGR00554 panK_bact pantothena 94.7 0.15 3.2E-06 53.9 9.2 28 171-198 60-87 (290)
342 PRK09519 recA DNA recombinatio 94.7 0.13 2.8E-06 61.4 9.6 87 172-265 59-150 (790)
343 TIGR00235 udk uridine kinase. 94.7 0.029 6.3E-07 56.9 3.8 28 171-198 4-31 (207)
344 COG0541 Ffh Signal recognition 94.7 4.5 9.8E-05 44.5 20.2 61 172-234 99-160 (451)
345 cd02027 APSK Adenosine 5'-phos 94.6 0.12 2.6E-06 49.2 7.6 25 175-199 1-25 (149)
346 PTZ00301 uridine kinase; Provi 94.6 0.033 7.1E-07 56.1 3.9 26 173-198 3-28 (210)
347 PF13671 AAA_33: AAA domain; P 94.6 0.03 6.6E-07 52.8 3.5 24 175-198 1-24 (143)
348 PRK08699 DNA polymerase III su 94.6 0.31 6.7E-06 52.8 11.5 25 173-197 21-45 (325)
349 PF00006 ATP-synt_ab: ATP synt 94.6 0.1 2.2E-06 52.5 7.3 87 174-264 16-116 (215)
350 PRK13765 ATP-dependent proteas 94.5 0.067 1.4E-06 63.0 6.8 78 149-230 28-105 (637)
351 PRK05342 clpX ATP-dependent pr 94.5 0.09 2E-06 58.7 7.5 47 152-198 71-133 (412)
352 PRK08233 hypothetical protein; 94.5 0.031 6.8E-07 55.3 3.6 26 173-198 3-28 (182)
353 KOG3347 Predicted nucleotide k 94.5 0.069 1.5E-06 48.7 5.2 71 173-253 7-77 (176)
354 TIGR02655 circ_KaiC circadian 94.5 0.14 3E-06 59.2 9.3 87 172-263 262-363 (484)
355 TIGR02902 spore_lonB ATP-depen 94.5 0.06 1.3E-06 62.7 6.3 50 149-198 62-111 (531)
356 TIGR03305 alt_F1F0_F1_bet alte 94.5 0.22 4.9E-06 55.6 10.4 92 173-265 138-244 (449)
357 PF06309 Torsin: Torsin; Inte 94.5 0.35 7.5E-06 43.6 9.5 45 153-197 26-77 (127)
358 PRK06762 hypothetical protein; 94.5 0.037 8E-07 53.9 3.8 25 173-197 2-26 (166)
359 COG3640 CooC CO dehydrogenase 94.5 0.086 1.9E-06 52.3 6.2 51 175-233 2-52 (255)
360 cd01122 GP4d_helicase GP4d_hel 94.4 0.36 7.8E-06 51.3 11.6 53 172-227 29-81 (271)
361 PF03205 MobB: Molybdopterin g 94.4 0.081 1.8E-06 49.5 5.8 39 174-213 1-39 (140)
362 PRK10463 hydrogenase nickel in 94.4 0.33 7.2E-06 51.0 10.7 94 165-264 96-195 (290)
363 PRK12597 F0F1 ATP synthase sub 94.4 0.14 3.1E-06 57.5 8.6 92 173-265 143-249 (461)
364 KOG0738 AAA+-type ATPase [Post 94.3 0.15 3.3E-06 54.2 8.0 28 172-199 244-271 (491)
365 COG0572 Udk Uridine kinase [Nu 94.3 0.039 8.5E-07 54.7 3.6 28 172-199 7-34 (218)
366 TIGR01360 aden_kin_iso1 adenyl 94.3 0.04 8.6E-07 54.9 3.8 26 172-197 2-27 (188)
367 COG4608 AppF ABC-type oligopep 94.3 0.14 3.1E-06 52.3 7.6 121 171-303 37-175 (268)
368 COG1224 TIP49 DNA helicase TIP 94.3 0.17 3.7E-06 53.2 8.1 55 151-205 38-97 (450)
369 TIGR03881 KaiC_arch_4 KaiC dom 94.2 0.41 8.9E-06 49.4 11.3 41 172-214 19-59 (229)
370 cd00561 CobA_CobO_BtuR ATP:cor 94.2 0.13 2.8E-06 48.9 6.7 118 174-300 3-140 (159)
371 PRK05439 pantothenate kinase; 94.2 0.27 5.9E-06 52.4 9.9 28 171-198 84-111 (311)
372 COG0194 Gmk Guanylate kinase [ 94.2 0.16 3.5E-06 48.7 7.3 25 173-197 4-28 (191)
373 TIGR02858 spore_III_AA stage I 94.2 0.056 1.2E-06 56.7 4.6 117 171-300 109-231 (270)
374 PF03308 ArgK: ArgK protein; 94.2 0.12 2.7E-06 52.5 6.8 61 160-220 14-76 (266)
375 CHL00081 chlI Mg-protoporyphyr 94.2 0.06 1.3E-06 58.4 4.9 50 149-198 14-63 (350)
376 COG1428 Deoxynucleoside kinase 94.1 0.039 8.5E-07 53.9 3.1 47 173-224 4-50 (216)
377 TIGR02030 BchI-ChlI magnesium 94.1 0.074 1.6E-06 57.6 5.6 47 151-197 3-49 (337)
378 PRK06217 hypothetical protein; 94.1 0.073 1.6E-06 52.7 5.1 34 175-209 3-38 (183)
379 COG0467 RAD55 RecA-superfamily 94.1 0.15 3.2E-06 53.8 7.7 55 171-230 21-75 (260)
380 PRK08972 fliI flagellum-specif 94.1 0.2 4.3E-06 55.7 8.8 90 172-265 161-264 (444)
381 PRK11823 DNA repair protein Ra 94.1 0.14 3.1E-06 58.1 8.1 87 173-264 80-167 (446)
382 PRK03839 putative kinase; Prov 94.1 0.045 9.8E-07 54.1 3.6 24 175-198 2-25 (180)
383 KOG0729 26S proteasome regulat 94.1 0.31 6.7E-06 48.9 9.1 72 172-264 210-281 (435)
384 TIGR00390 hslU ATP-dependent p 94.0 0.12 2.7E-06 56.7 7.0 48 152-199 12-73 (441)
385 cd03281 ABC_MSH5_euk MutS5 hom 94.0 0.031 6.8E-07 56.6 2.4 24 173-196 29-52 (213)
386 PRK05973 replicative DNA helic 94.0 0.35 7.6E-06 49.5 9.9 49 172-224 63-111 (237)
387 PRK09280 F0F1 ATP synthase sub 94.0 0.39 8.4E-06 53.9 10.9 92 173-265 144-250 (463)
388 PF01583 APS_kinase: Adenylyls 94.0 0.085 1.8E-06 49.9 4.9 35 174-210 3-37 (156)
389 COG1703 ArgK Putative periplas 93.9 0.13 2.8E-06 53.1 6.4 63 163-225 39-103 (323)
390 TIGR00416 sms DNA repair prote 93.9 0.16 3.5E-06 57.8 8.0 88 172-264 93-181 (454)
391 TIGR03575 selen_PSTK_euk L-ser 93.9 0.26 5.7E-06 53.3 9.1 36 176-212 2-37 (340)
392 PRK00625 shikimate kinase; Pro 93.9 0.048 1.1E-06 53.1 3.3 24 175-198 2-25 (173)
393 PF00910 RNA_helicase: RNA hel 93.9 0.047 1E-06 48.5 2.9 24 176-199 1-24 (107)
394 TIGR02655 circ_KaiC circadian 93.9 0.24 5.1E-06 57.3 9.4 87 172-262 20-129 (484)
395 cd01125 repA Hexameric Replica 93.8 0.3 6.4E-06 50.8 9.3 24 175-198 3-26 (239)
396 KOG3864 Uncharacterized conser 93.8 0.0061 1.3E-07 58.7 -3.0 88 750-846 103-190 (221)
397 TIGR01039 atpD ATP synthase, F 93.8 0.46 1E-05 53.1 11.1 92 173-265 143-249 (461)
398 TIGR00750 lao LAO/AO transport 93.8 0.24 5.3E-06 53.3 8.9 31 170-200 31-61 (300)
399 PRK04040 adenylate kinase; Pro 93.8 0.054 1.2E-06 53.6 3.5 25 174-198 3-27 (188)
400 PRK10751 molybdopterin-guanine 93.8 0.069 1.5E-06 51.5 4.1 29 172-200 5-33 (173)
401 PRK12678 transcription termina 93.8 0.13 2.8E-06 58.2 6.7 92 173-265 416-515 (672)
402 KOG0727 26S proteasome regulat 93.8 0.42 9E-06 47.6 9.3 28 171-198 187-214 (408)
403 PRK10416 signal recognition pa 93.7 0.41 8.9E-06 51.6 10.3 29 172-200 113-141 (318)
404 KOG1532 GTPase XAB1, interacts 93.7 0.082 1.8E-06 53.3 4.5 63 172-234 18-89 (366)
405 PTZ00088 adenylate kinase 1; P 93.7 0.11 2.3E-06 53.2 5.5 23 176-198 9-31 (229)
406 PRK08149 ATP synthase SpaL; Va 93.7 0.2 4.3E-06 55.8 7.9 90 172-265 150-253 (428)
407 PRK00409 recombination and DNA 93.7 0.24 5.1E-06 60.4 9.3 183 171-380 325-527 (782)
408 TIGR00150 HI0065_YjeE ATPase, 93.7 0.12 2.7E-06 47.4 5.3 40 160-199 7-48 (133)
409 PF08433 KTI12: Chromatin asso 93.6 0.079 1.7E-06 55.6 4.5 26 174-199 2-27 (270)
410 PRK00131 aroK shikimate kinase 93.6 0.069 1.5E-06 52.4 3.9 26 173-198 4-29 (175)
411 PRK00889 adenylylsulfate kinas 93.6 0.088 1.9E-06 51.7 4.6 28 172-199 3-30 (175)
412 cd02023 UMPK Uridine monophosp 93.6 0.051 1.1E-06 54.7 2.9 23 175-197 1-23 (198)
413 PRK08927 fliI flagellum-specif 93.6 0.44 9.5E-06 53.2 10.3 90 172-265 157-260 (442)
414 PRK06731 flhF flagellar biosyn 93.5 0.35 7.7E-06 50.6 9.1 90 172-264 74-165 (270)
415 cd02024 NRK1 Nicotinamide ribo 93.5 0.055 1.2E-06 53.2 3.0 23 175-197 1-23 (187)
416 PRK05917 DNA polymerase III su 93.5 1.3 2.9E-05 46.6 13.3 39 160-198 5-44 (290)
417 PF03215 Rad17: Rad17 cell cyc 93.5 0.12 2.6E-06 59.5 6.0 56 151-210 18-78 (519)
418 PRK13407 bchI magnesium chelat 93.5 0.096 2.1E-06 56.7 5.0 48 150-197 6-53 (334)
419 PRK06002 fliI flagellum-specif 93.4 0.18 3.9E-06 56.3 7.1 91 172-265 164-266 (450)
420 COG2884 FtsE Predicted ATPase 93.4 0.25 5.5E-06 47.4 7.0 28 172-199 27-54 (223)
421 PF07726 AAA_3: ATPase family 93.4 0.048 1E-06 49.1 2.1 24 176-199 2-25 (131)
422 PTZ00185 ATPase alpha subunit; 93.4 0.43 9.4E-06 53.6 9.9 93 173-265 189-301 (574)
423 KOG1051 Chaperone HSP104 and r 93.4 0.4 8.7E-06 57.8 10.3 103 152-265 562-672 (898)
424 TIGR00764 lon_rel lon-related 93.4 0.16 3.5E-06 60.0 7.1 77 150-230 16-92 (608)
425 TIGR02322 phosphon_PhnN phosph 93.4 0.069 1.5E-06 52.7 3.5 25 174-198 2-26 (179)
426 PF13245 AAA_19: Part of AAA d 93.4 0.19 4.1E-06 41.2 5.5 26 172-197 9-35 (76)
427 TIGR00382 clpX endopeptidase C 93.4 0.25 5.3E-06 55.0 8.0 47 152-198 77-141 (413)
428 cd00984 DnaB_C DnaB helicase C 93.4 0.71 1.5E-05 48.1 11.3 51 173-226 13-63 (242)
429 PRK09435 membrane ATPase/prote 93.3 0.73 1.6E-05 49.8 11.3 39 162-200 43-83 (332)
430 cd02028 UMPK_like Uridine mono 93.3 0.08 1.7E-06 52.1 3.8 25 175-199 1-25 (179)
431 PRK15429 formate hydrogenlyase 93.3 0.18 3.9E-06 61.3 7.5 61 151-213 375-437 (686)
432 cd02020 CMPK Cytidine monophos 93.2 0.069 1.5E-06 50.6 3.1 24 175-198 1-24 (147)
433 PRK14529 adenylate kinase; Pro 93.2 0.29 6.2E-06 49.6 7.6 83 176-264 3-87 (223)
434 PF13504 LRR_7: Leucine rich r 93.2 0.063 1.4E-06 29.6 1.6 16 605-620 2-17 (17)
435 COG1936 Predicted nucleotide k 93.2 0.074 1.6E-06 50.2 3.0 20 175-194 2-21 (180)
436 PRK06936 type III secretion sy 93.2 0.41 8.9E-06 53.4 9.3 90 172-265 161-264 (439)
437 PF01078 Mg_chelatase: Magnesi 93.1 0.15 3.3E-06 50.4 5.2 44 151-196 2-45 (206)
438 PRK05201 hslU ATP-dependent pr 93.1 0.25 5.3E-06 54.4 7.3 76 152-227 15-106 (443)
439 PF12775 AAA_7: P-loop contain 93.1 0.064 1.4E-06 56.5 2.8 56 162-220 23-78 (272)
440 CHL00060 atpB ATP synthase CF1 93.1 0.39 8.4E-06 54.1 9.0 92 173-265 161-274 (494)
441 COG0003 ArsA Predicted ATPase 93.1 0.19 4.2E-06 53.8 6.5 49 173-223 2-50 (322)
442 cd00227 CPT Chloramphenicol (C 93.1 0.084 1.8E-06 51.8 3.5 25 174-198 3-27 (175)
443 TIGR01287 nifH nitrogenase iro 93.1 0.091 2E-06 56.0 4.0 37 174-212 1-37 (275)
444 cd03284 ABC_MutS1 MutS1 homolo 93.0 0.05 1.1E-06 55.3 1.8 22 174-195 31-52 (216)
445 cd00544 CobU Adenosylcobinamid 93.0 0.37 8.1E-06 46.7 7.7 81 176-263 2-83 (169)
446 TIGR00176 mobB molybdopterin-g 92.9 0.1 2.2E-06 49.9 3.7 33 175-208 1-33 (155)
447 cd02021 GntK Gluconate kinase 92.9 0.077 1.7E-06 50.6 2.9 23 175-197 1-23 (150)
448 KOG0735 AAA+-type ATPase [Post 92.9 0.52 1.1E-05 54.2 9.6 70 175-265 703-772 (952)
449 PRK14531 adenylate kinase; Pro 92.9 0.15 3.3E-06 50.4 5.1 24 175-198 4-27 (183)
450 PF00625 Guanylate_kin: Guanyl 92.9 0.13 2.9E-06 50.9 4.7 37 173-211 2-38 (183)
451 COG0714 MoxR-like ATPases [Gen 92.9 0.24 5.2E-06 54.3 7.1 64 154-224 26-89 (329)
452 PRK13947 shikimate kinase; Pro 92.9 0.085 1.8E-06 51.6 3.2 24 175-198 3-26 (171)
453 PRK13949 shikimate kinase; Pro 92.9 0.089 1.9E-06 51.2 3.3 24 175-198 3-26 (169)
454 TIGR01041 ATP_syn_B_arch ATP s 92.9 0.58 1.3E-05 52.7 10.1 93 173-265 141-250 (458)
455 TIGR03263 guanyl_kin guanylate 92.8 0.079 1.7E-06 52.3 3.0 24 174-197 2-25 (180)
456 PRK03846 adenylylsulfate kinas 92.8 0.16 3.5E-06 51.0 5.2 30 170-199 21-50 (198)
457 PF10236 DAP3: Mitochondrial r 92.8 10 0.00022 40.9 19.3 47 310-356 258-306 (309)
458 TIGR03498 FliI_clade3 flagella 92.8 0.39 8.4E-06 53.6 8.5 91 172-265 139-242 (418)
459 TIGR03880 KaiC_arch_3 KaiC dom 92.8 0.6 1.3E-05 47.9 9.5 48 172-223 15-62 (224)
460 TIGR00073 hypB hydrogenase acc 92.7 0.12 2.5E-06 52.4 4.1 31 168-198 17-47 (207)
461 PF00158 Sigma54_activat: Sigm 92.7 0.19 4.1E-06 48.7 5.2 44 154-197 1-46 (168)
462 PF08298 AAA_PrkA: PrkA AAA do 92.6 0.21 4.5E-06 53.4 5.8 81 152-237 61-154 (358)
463 PRK14530 adenylate kinase; Pro 92.6 0.1 2.3E-06 53.2 3.6 25 174-198 4-28 (215)
464 cd02029 PRK_like Phosphoribulo 92.6 0.52 1.1E-05 48.6 8.5 26 175-200 1-26 (277)
465 cd00464 SK Shikimate kinase (S 92.5 0.11 2.3E-06 49.8 3.4 23 176-198 2-24 (154)
466 COG1763 MobB Molybdopterin-gua 92.5 0.13 2.9E-06 48.8 3.8 30 173-202 2-31 (161)
467 PLN02924 thymidylate kinase 92.5 0.55 1.2E-05 47.8 8.6 53 173-226 16-68 (220)
468 cd02117 NifH_like This family 92.5 0.16 3.5E-06 51.6 4.8 28 174-201 1-28 (212)
469 PF13504 LRR_7: Leucine rich r 92.5 0.075 1.6E-06 29.3 1.3 16 560-575 2-17 (17)
470 COG2019 AdkA Archaeal adenylat 92.5 0.13 2.8E-06 48.1 3.5 25 173-197 4-28 (189)
471 COG1124 DppF ABC-type dipeptid 92.5 0.1 2.2E-06 52.3 3.1 27 172-198 32-58 (252)
472 PRK09302 circadian clock prote 92.5 0.45 9.7E-06 55.7 9.0 90 171-264 29-141 (509)
473 TIGR01040 V-ATPase_V1_B V-type 92.5 0.41 8.9E-06 53.3 8.1 92 173-264 141-258 (466)
474 PRK13695 putative NTPase; Prov 92.5 0.19 4.1E-06 49.3 5.1 34 175-209 2-35 (174)
475 PRK14527 adenylate kinase; Pro 92.5 0.12 2.7E-06 51.5 3.8 28 171-198 4-31 (191)
476 cd00071 GMPK Guanosine monopho 92.5 0.094 2E-06 49.0 2.7 23 175-197 1-23 (137)
477 PRK00300 gmk guanylate kinase; 92.5 0.12 2.5E-06 52.4 3.7 26 172-197 4-29 (205)
478 cd01134 V_A-ATPase_A V/A-type 92.4 0.89 1.9E-05 48.8 10.2 50 172-225 156-206 (369)
479 PRK13236 nitrogenase reductase 92.4 0.14 3.1E-06 55.0 4.5 32 170-201 3-34 (296)
480 PF02374 ArsA_ATPase: Anion-tr 92.4 0.23 5E-06 53.4 6.0 46 174-221 2-47 (305)
481 PRK05057 aroK shikimate kinase 92.4 0.13 2.8E-06 50.3 3.8 26 173-198 4-29 (172)
482 TIGR01313 therm_gnt_kin carboh 92.3 0.093 2E-06 50.8 2.7 22 176-197 1-22 (163)
483 cd03116 MobB Molybdenum is an 92.3 0.2 4.2E-06 48.0 4.8 27 174-200 2-28 (159)
484 PF08477 Miro: Miro-like prote 92.3 0.12 2.6E-06 46.9 3.2 23 176-198 2-24 (119)
485 cd01983 Fer4_NifH The Fer4_Nif 92.3 0.15 3.2E-06 44.2 3.7 25 175-199 1-25 (99)
486 PRK09302 circadian clock prote 92.3 0.8 1.7E-05 53.6 10.9 88 172-264 272-374 (509)
487 TIGR01650 PD_CobS cobaltochela 92.3 0.46 9.9E-06 50.8 7.9 62 153-221 46-107 (327)
488 PRK07594 type III secretion sy 92.3 0.47 1E-05 53.0 8.3 91 171-265 153-257 (433)
489 KOG2170 ATPase of the AAA+ sup 92.3 0.56 1.2E-05 48.4 8.1 99 153-265 83-190 (344)
490 cd01132 F1_ATPase_alpha F1 ATP 92.3 0.67 1.5E-05 48.2 8.9 89 173-265 69-173 (274)
491 PRK12339 2-phosphoglycerate ki 92.3 0.13 2.9E-06 51.2 3.7 25 173-197 3-27 (197)
492 TIGR00708 cobA cob(I)alamin ad 92.2 0.53 1.1E-05 45.4 7.5 120 173-300 5-142 (173)
493 COG0396 sufC Cysteine desulfur 92.2 0.72 1.6E-05 45.9 8.5 27 171-197 28-54 (251)
494 PRK10078 ribose 1,5-bisphospho 92.2 0.11 2.3E-06 51.6 3.1 24 174-197 3-26 (186)
495 PRK13975 thymidylate kinase; P 92.2 0.12 2.7E-06 51.8 3.5 25 174-198 3-27 (196)
496 cd03287 ABC_MSH3_euk MutS3 hom 92.2 0.095 2.1E-06 53.3 2.7 118 172-302 30-158 (222)
497 PF03266 NTPase_1: NTPase; In 92.2 0.19 4.2E-06 48.6 4.7 24 176-199 2-25 (168)
498 cd00820 PEPCK_HprK Phosphoenol 92.2 0.12 2.6E-06 45.3 2.9 22 173-194 15-36 (107)
499 PF13479 AAA_24: AAA domain 92.2 0.47 1E-05 48.2 7.7 30 175-214 5-34 (213)
500 PRK13230 nitrogenase reductase 92.2 0.14 3.1E-06 54.6 4.1 28 174-201 2-29 (279)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-83 Score=754.28 Aligned_cols=789 Identities=25% Similarity=0.375 Sum_probs=564.8
Q ss_pred HHHHHhHhhhhhchhhchHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhhhhhcccccccccc--
Q 002133 19 ELLFDPIREEISYVCKYQSNVKELKNVGERVEQAVKHADRQGDDIFSDVQEWLTKFDEWTKRVGNAVVEDEGEDEANK-- 96 (961)
Q Consensus 19 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~l~~~~y~~~ed~ld~~~~~~~~~-- 96 (961)
+++.+.+.+++..+.++++++..|++.|..++.++++|++++. ....+..|.+.+++++| ++||.++.+.......
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~-~~e~~~~~~~v~~~~~~~ 87 (889)
T KOG4658|consen 10 EKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVY-LAEDIIWLFLVEEIERKA 87 (889)
T ss_pred hhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444677788889999999999999999999999999999865 47889999999999999 9999988754211000
Q ss_pred ---c--------cccccccc-CchhhhhHHHHHHHHHHhhhhhhhhcccccCC---CC-CCCccccccCCccccCCchHH
Q 002133 97 ---K--------RCTFKDLC-SKMMTRYRLSKEAAKAAREGNIILQRQNVGHR---PD-PETMERFSVRGYVHFPSRNPV 160 (961)
Q Consensus 97 ---~--------~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~---~~-~~~~~~~~~~~~~~~~gr~~~ 160 (961)
. +-++.+.+ .....-+.+++++..+...++.+.....+... .. ++..+..|...... ||.+..
T Consensus 88 ~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~ 166 (889)
T KOG4658|consen 88 NDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETM 166 (889)
T ss_pred hHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHH
Confidence 0 00011111 22233344455554444422222211111111 11 12223334444444 999999
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh-hcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCC--C
Q 002133 161 FQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV-KEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD--S 237 (961)
Q Consensus 161 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~ 237 (961)
++.+.+.|.+++..+++|+||||+||||||++++++.. ++++||.++||.||+.++...++.+|++.++....... .
T Consensus 167 ~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~ 246 (889)
T KOG4658|consen 167 LEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKE 246 (889)
T ss_pred HHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhh
Confidence 99999999988889999999999999999999999998 89999999999999999999999999999887443331 2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecchhhhhhcCCCCceEEccCCC
Q 002133 238 LVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINMSNPRIFSISTLA 317 (961)
Q Consensus 238 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~~l~~L~ 317 (961)
..+.+..+.+.|. +|||+||+||||+..+|+.++.|+|. ..+||+|++|||++.|+...+++...++++.|+
T Consensus 247 ~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~-------~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~ 318 (889)
T KOG4658|consen 247 EDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPS-------RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLT 318 (889)
T ss_pred HHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCC-------ccCCeEEEEEeccHhhhhccccCCccccccccC
Confidence 3577888888887 48999999999999999999999998 788999999999999987668888999999999
Q ss_pred HHHHHHHHHHHhCCC--CCCCchhHHHHHHHHhhCCchHHHHHHHHHhccC-ChHHHHHHHHHHHhcCCCcccccccc-c
Q 002133 318 DGEAKSLFEKIVGDS--AKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQ-STHVWKDAINWLRKSNPRKIKGMDAD-L 393 (961)
Q Consensus 318 ~~~s~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~-~ 393 (961)
.+|||.||.+.++.. ...+.+.++|++++++|+|+|||++++|+.|+.+ +.++|+++.+.+......+.+++.+. +
T Consensus 319 ~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 319 PEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred ccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 999999999999854 3334589999999999999999999999999965 77899999999887755555555555 8
Q ss_pred chhHhhhhcCcHhHHHHHHHhcCCCCCCCCChhhHHHHHHHhCccccccchHHHHHHHHHHHHHHhhcccccccCC---C
Q 002133 394 SSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLNGD---T 470 (961)
Q Consensus 394 ~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~i~~L~~~~l~~~~~---~ 470 (961)
+++++||+.||+++|.||+|||+||+||.|+++.|+.+|+||| |+.+....+.+++.+++++.+|++++++.... .
T Consensus 399 ~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEG-fi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 399 PILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEG-FIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred HhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhcc-CcCccccccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999 99876666677888888999999999998764 4
Q ss_pred CCeEeehHHHHHHHHHHhc-----cCcEEEEccCcchhhhHHhhhcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCC
Q 002133 471 EDHVKMHQIIHALAVLIAS-----DKLLFNIQNVADVKEEVEKAARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTED 545 (961)
Q Consensus 471 ~~~~~mH~lv~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~ 545 (961)
..+|+|||+||++|.++++ +++.+ +.++......+....+..+|++++.+|.+..++....+++|++|.+.+|.
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~ 556 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNS 556 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecc
Confidence 5899999999999999999 56533 44433444445555678899999999999999988899999999999997
Q ss_pred C-CCCCChhhhhCCCceeEEEecCCC-CCCCCccccCCcCCCEEEccCCCCCCCccccCCCCCcEEEeccCcCCccchhh
Q 002133 546 S-SLQIPNQFFDGMTELLVLHLTGIH-FPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQI 623 (961)
Q Consensus 546 ~-~~~~~~~~~~~l~~L~~L~L~~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 623 (961)
. ...++..+|..++.|++|||++|. +..+|+++++|.+||||+|+++. ++.+|.++
T Consensus 557 ~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~----------------------I~~LP~~l 614 (889)
T KOG4658|consen 557 DWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG----------------------ISHLPSGL 614 (889)
T ss_pred hhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC----------------------ccccchHH
Confidence 3 447888889999999999999874 56888888877777777776665 45566666
Q ss_pred hcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccCcchhcccccc-c
Q 002133 624 GNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDL-I 702 (961)
Q Consensus 624 ~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L-~ 702 (961)
++|++|.+|++..+..+..+ ++.+..|++|++|.+.... .......+.++.++.+|+.+....... .....+ .
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~----~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~ 688 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA----LSNDKLLLKELENLEHLENLSITISSV-LLLEDLLG 688 (889)
T ss_pred HHHHhhheeccccccccccc-cchhhhcccccEEEeeccc----cccchhhHHhhhcccchhhheeecchh-HhHhhhhh
Confidence 66666666666654444444 3334456666666654321 112223344555566666555543222 000100 0
Q ss_pred cccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEe
Q 002133 703 SLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHV 782 (961)
Q Consensus 703 ~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L 782 (961)
...| ....+.+.+.++...+ .+. ....+++|+.|.+
T Consensus 689 ~~~L----------------------------------------~~~~~~l~~~~~~~~~-~~~---~~~~l~~L~~L~i 724 (889)
T KOG4658|consen 689 MTRL----------------------------------------RSLLQSLSIEGCSKRT-LIS---SLGSLGNLEELSI 724 (889)
T ss_pred hHHH----------------------------------------HHHhHhhhhcccccce-eec---ccccccCcceEEE
Confidence 0011 1111222222221111 111 2256677777777
Q ss_pred ecCCCcccccCCC---CCc-cCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcc
Q 002133 783 QNDPKILCIANSE---GPV-IFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLL 858 (961)
Q Consensus 783 ~~~~~l~~i~~~~---~~~-~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~ 858 (961)
.+|...+...... ... .||++..+.+.+|..++...+. ...|+|+.|.+.+|+.++.+.+. ...+.
T Consensus 725 ~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~--------~f~~~L~~l~l~~~~~~e~~i~~--~k~~~ 794 (889)
T KOG4658|consen 725 LDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL--------LFAPHLTSLSLVSCRLLEDIIPK--LKALL 794 (889)
T ss_pred EcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh--------hccCcccEEEEecccccccCCCH--HHHhh
Confidence 7775443221110 111 2677777788887776666433 24578888888888888777543 23333
Q ss_pred cccE----------E-eEeccccccccccccccCCccCCCcccccccccccceeccccccccccCCCC
Q 002133 859 QLEE----------L-EVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYL 915 (961)
Q Consensus 859 ~L~~----------L-~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~i~~~~ 915 (961)
.++. + .+.+.+.+.++... + ..++.|+.+.+..||++.++|...
T Consensus 795 ~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~----------~---l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 795 ELKELILPFNKLEGLRMLCSLGGLPQLYWL----------P---LSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred hcccEEecccccccceeeecCCCCceeEec----------c---cCccchhheehhcCcccccCcccc
Confidence 3433 2 12222222222111 1 234558888888888888887653
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.7e-64 Score=631.97 Aligned_cols=681 Identities=19% Similarity=0.265 Sum_probs=490.2
Q ss_pred CCccccCCchHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEe---cCC---------
Q 002133 149 RGYVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV---THT--------- 214 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~--------- 214 (961)
.....++||+..++++..++. .+++++|+||||||+||||||+++|++.. .+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccc
Confidence 346679999999999998885 56789999999999999999999999876 56998888742 111
Q ss_pred --CC-HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEE
Q 002133 215 --PD-WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTL 291 (961)
Q Consensus 215 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~I 291 (961)
.+ ...++++++..+-........ ....+++.++ +||+||||||||+..+|+.+...... .++||+|
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~-------~~~GsrI 327 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQW-------FGSGSRI 327 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCcc-------CCCCcEE
Confidence 01 123344444433211110000 1245666676 48999999999999999887554332 4689999
Q ss_pred EEEecchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCC-CCCchhHHHHHHHHhhCCchHHHHHHHHHhccCChHH
Q 002133 292 LLASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSA-KESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHV 370 (961)
Q Consensus 292 lvTtR~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~-~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~ 370 (961)
|||||++.++.. .+..++|+++.+++++||+||+++||... ++.++.+++++|+++|+|+|||++++|++|++++..+
T Consensus 328 IiTTrd~~vl~~-~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~ 406 (1153)
T PLN03210 328 IVITKDKHFLRA-HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406 (1153)
T ss_pred EEEeCcHHHHHh-cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHH
Confidence 999999999743 55678999999999999999999998543 4556889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcccccccccchhHhhhhcCcH-hHHHHHHHhcCCCCCCCCChhhHHHHHHHhCccccccchHHHHH
Q 002133 371 WKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEP-EAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEVAR 449 (961)
Q Consensus 371 w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 449 (961)
|++++.+++.... .+..+++++||+.|++ ..|.||+++|+|+.++.++ .+..|.+.+ ....
T Consensus 407 W~~~l~~L~~~~~------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~-~~~~-------- 468 (1153)
T PLN03210 407 WMDMLPRLRNGLD------GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANS-DLDV-------- 468 (1153)
T ss_pred HHHHHHHHHhCcc------HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhc-CCCc--------
Confidence 9999999876431 1228899999999987 5999999999998876553 466788876 3211
Q ss_pred HHHHHHHHHhhcccccccCCCCCeEeehHHHHHHHHHHhccCc------EEEEccCcchhhhHHhhhcCCCcEEecCCCC
Q 002133 450 NRVYTLMDHLKGPCLLLNGDTEDHVKMHQIIHALAVLIASDKL------LFNIQNVADVKEEVEKAARKNPTAISIPFRD 523 (961)
Q Consensus 450 ~~~~~~i~~L~~~~l~~~~~~~~~~~mH~lv~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 523 (961)
...++.|++++|++.. .+.++|||++|++++.++.++. .+.+....-..........++++.+++..+.
T Consensus 469 ---~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~ 543 (1153)
T PLN03210 469 ---NIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE 543 (1153)
T ss_pred ---hhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc
Confidence 1236778889999764 3579999999999999987442 1112211111111222345677888877666
Q ss_pred CCCCC--C-cc-CCCceeEEEeccCC------CCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCC
Q 002133 524 ISELP--D-SL-QCTRLKLFLLFTED------SSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCH 593 (961)
Q Consensus 524 ~~~lp--~-~~-~~~~L~~L~l~~n~------~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~ 593 (961)
+..+. . .+ ++++|+.|.+..+. ....+|..+..-..+||.|++.++.+..+|..+ .+.+|+.|++.+|.
T Consensus 544 ~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 544 IDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK 622 (1153)
T ss_pred cceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc
Confidence 64432 1 22 78899999886553 223456665333457899999998888888877 56889999999988
Q ss_pred CCC-CccccCCCCCcEEEeccC-cCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCC-CccccCC
Q 002133 594 LED-VARVGDLAKLEILSFRNS-HIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF-TRKVEGQ 670 (961)
Q Consensus 594 l~~-~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~ 670 (961)
+.. +..+..+++|++|+|++| .++.+|. ++.+++|++|++++|..+..+|.. ++++++|+.|++++|. +..+|.
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~- 699 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPT- 699 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCC-
Confidence 887 577788889999999887 5677774 778889999999988888888776 7888999999998763 444442
Q ss_pred CccchHhhcCCCCCCEEEccCcchh----ccccccccccccceeEEEecccCCCCCCCccceEEecCCC-------cccc
Q 002133 671 SNASVVELKQLSSLTILDMHIPDAQ----LLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDN-------SIYL 739 (961)
Q Consensus 671 ~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~-------~~~~ 739 (961)
. .++++|+.|+++.+... ....+|+.++|.++.+.. .+... ....+..+.+.... ...+
T Consensus 700 ------~-i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 700 ------G-INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE--FPSNL-RLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred ------c-CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccc--ccccc-cccccccccccccchhhcccccccc
Confidence 1 15777888877633222 123466777777776532 12111 12233333332211 0111
Q ss_pred hHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccc
Q 002133 740 GYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCG 819 (961)
Q Consensus 740 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 819 (961)
+......+++|+.|+|++|.....+|..+ +++++|+.|+|++|+.++.++.. ..+++|+.|++++|..+..++
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si---~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p- 842 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSI---QNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFP- 842 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhh---hCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCcccccc-
Confidence 22222345789999999999888888877 88999999999999999888753 268999999999998887663
Q ss_pred cccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccccccccc
Q 002133 820 SQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHS 899 (961)
Q Consensus 820 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~ 899 (961)
...++|++|+++++ .++.+|.. +..+++|+.|++++|++|+.++ ..+..+++|+.
T Consensus 843 ---------~~~~nL~~L~Ls~n-~i~~iP~s--i~~l~~L~~L~L~~C~~L~~l~-------------~~~~~L~~L~~ 897 (1153)
T PLN03210 843 ---------DISTNISDLNLSRT-GIEEVPWW--IEKFSNLSFLDMNGCNNLQRVS-------------LNISKLKHLET 897 (1153)
T ss_pred ---------ccccccCEeECCCC-CCccChHH--HhcCCCCCEEECCCCCCcCccC-------------cccccccCCCe
Confidence 22467888888874 67777542 5778888888888888888874 23356788888
Q ss_pred eeccccccccccC
Q 002133 900 LALRRLPQLTSSG 912 (961)
Q Consensus 900 L~l~~c~~L~~i~ 912 (961)
|++++|++|+.++
T Consensus 898 L~l~~C~~L~~~~ 910 (1153)
T PLN03210 898 VDFSDCGALTEAS 910 (1153)
T ss_pred eecCCCccccccc
Confidence 8888888887654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.3e-42 Score=370.89 Aligned_cols=275 Identities=31% Similarity=0.526 Sum_probs=220.8
Q ss_pred chHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc-
Q 002133 157 RNPVFQKMMESLRD--SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV- 233 (961)
Q Consensus 157 r~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 233 (961)
|+.++++|.+.|.+ ++.++|+|+||||+||||||++++++...+++|+.++|++++...+...++.+|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 789999999999999999999999997777899999999999999999999999999988743
Q ss_pred --CCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecchhhhhhcCCCCceE
Q 002133 234 --RPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINMSNPRIF 311 (961)
Q Consensus 234 --~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~ 311 (961)
...+..+....+.+.+.. +++||||||||+...|+.+...++. ...|++||||||+..++.........+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~-------~~~~~kilvTTR~~~v~~~~~~~~~~~ 152 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPS-------FSSGSKILVTTRDRSVAGSLGGTDKVI 152 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HC-------HHSS-EEEEEESCGGGGTTHHSCEEEE
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccccccccccc-------ccccccccccccccccccccccccccc
Confidence 234667788889988875 6999999999999999888777666 667999999999998874322336789
Q ss_pred EccCCCHHHHHHHHHHHhCCCC--CCCchhHHHHHHHHhhCCchHHHHHHHHHhcc-CChHHHHHHHHHHHhcCCCcccc
Q 002133 312 SISTLADGEAKSLFEKIVGDSA--KESDCRAIGVEIVGKCGGLPIAVSTIANALKG-QSTHVWKDAINWLRKSNPRKIKG 388 (961)
Q Consensus 312 ~l~~L~~~~s~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~-~~~~~w~~~~~~l~~~~~~~~~~ 388 (961)
++++|+.++|++||.+.++... ..+...+.+++|+++|+|+||||+++|++|+. .+..+|+++++.+...... ..+
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~ 231 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRD 231 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 9999999999999999998543 34556778999999999999999999999963 3788999999988766522 222
Q ss_pred cccc-cchhHhhhhcCcHhHHHHHHHhcCCCCCCCCChhhHHHHHHHhCccccc
Q 002133 389 MDAD-LSSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTG 441 (961)
Q Consensus 389 ~~~~-~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~ 441 (961)
.... +.++.+||+.||+++|+||+|||+||+++.|+++.++++|+++| +++.
T Consensus 232 ~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~-~i~~ 284 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEG-FISS 284 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-H-HTC-
T ss_pred ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCC-CCcc
Confidence 2223 88999999999999999999999999999999999999999999 8764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.3e-25 Score=283.69 Aligned_cols=375 Identities=19% Similarity=0.174 Sum_probs=211.5
Q ss_pred cCCCcEEecCCCCCC-CCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCC-CCCccccCCcCCCEE
Q 002133 511 RKNPTAISIPFRDIS-ELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLGSLINLRTL 587 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~-~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~~~~l~~L~~L 587 (961)
..+++.|++++|.+. .+|..+ ++++|++|++++|.+.+.+|..+ +++++|++|++++|.+. .+|..++++++|++|
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 456777777777663 455554 67777777777777766666554 66777777777777766 567777777777777
Q ss_pred EccCCCCCC--CccccCCCCCcEEEeccCcCC-ccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCC
Q 002133 588 SFDCCHLED--VARVGDLAKLEILSFRNSHIE-QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (961)
Q Consensus 588 ~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 664 (961)
++++|.+++ |..++++++|++|++++|.+. .+|..+.++++|++|++++|.....+| ..+.++++|++|++++|.+
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCcc
Confidence 777777665 566777777777777777665 566667777777777777743333343 3366777777777776654
Q ss_pred ccccCCCccchHhhcCCCCCCEEEcc-------CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcc
Q 002133 665 RKVEGQSNASVVELKQLSSLTILDMH-------IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSI 737 (961)
Q Consensus 665 ~~~~~~~~~~~~~l~~l~~L~~L~l~-------~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~ 737 (961)
.... ...+..+++|+.|+++ ++..+..+++|+.++|++|.+.. ..+.+......++.+.+..+...
T Consensus 321 ~~~~------~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~-~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 321 TGKI------PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG-EIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred CCcC------ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe-eCChhHhCcCCCCEEECcCCEec
Confidence 3211 1345566667766664 23344555666777777776542 22222222334444444433222
Q ss_pred -cchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceecccccccccc
Q 002133 738 -YLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEK 816 (961)
Q Consensus 738 -~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~ 816 (961)
..|..+. .+++|+.|++++|......|..+ ..+++|+.|++++|.....++. ....+++|+.|++++|.-...
T Consensus 394 ~~~p~~~~-~~~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 394 GEIPKSLG-ACRSLRRVRLQDNSFSGELPSEF---TKLPLVYFLDISNNNLQGRINS--RKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred ccCCHHHh-CCCCCCEEECcCCEeeeECChhH---hcCCCCCEEECcCCcccCccCh--hhccCCCCcEEECcCceeeee
Confidence 2233332 23566666666665555555444 5556666666666543322221 223455555555555432222
Q ss_pred cccccc----------------ccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEecccccccccccccc
Q 002133 817 VCGSQV----------------QLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETD 880 (961)
Q Consensus 817 ~~~~~~----------------~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~ 880 (961)
++.... ..+.....+++|++|++++|.-...+| .. +.++++|++|+|++|.....+
T Consensus 468 ~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~-~~~l~~L~~L~Ls~N~l~~~~------ 539 (968)
T PLN00113 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-DE-LSSCKKLVSLDLSHNQLSGQI------ 539 (968)
T ss_pred cCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC-hH-HcCccCCCEEECCCCcccccC------
Confidence 211000 000001334555555555542222222 22 245555555555555333222
Q ss_pred CCccCCCcccccccccccceeccccccccccCCCC
Q 002133 881 NHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYL 915 (961)
Q Consensus 881 ~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~i~~~~ 915 (961)
|..+..+++|++|++++|.-...+|..+
T Consensus 540 -------p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 540 -------PASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred -------ChhHhCcccCCEEECCCCcccccCChhH
Confidence 4556788999999999998777777655
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.6e-25 Score=283.01 Aligned_cols=371 Identities=19% Similarity=0.174 Sum_probs=206.6
Q ss_pred cCCCcEEecCCCCCC-CCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCC-CCCccccCCcCCCEE
Q 002133 511 RKNPTAISIPFRDIS-ELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLGSLINLRTL 587 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~-~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~~~~l~~L~~L 587 (961)
..++++|++++|.+. .+|..+ ++++|+.|++++|.+.+.+|..+ +++++|++|++++|.+. .+|..++++++|++|
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 265 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEE
Confidence 345555555555553 344443 55555556555555555555443 55555555555555554 445555555555555
Q ss_pred EccCCCCCC--CccccCCCCCcEEEeccCcCC-ccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCC
Q 002133 588 SFDCCHLED--VARVGDLAKLEILSFRNSHIE-QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (961)
Q Consensus 588 ~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 664 (961)
++++|.+++ |..+.++++|++|++++|.+. .+|..+.++++|++|++++|.....+| ..+..+++|+.|++++|.+
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCC
Confidence 555555544 345555555555555555554 445555555555555555533222332 2255555555555555543
Q ss_pred c-cccCCCccchHhhcCCCCCCEEEc------------------------c-------CcchhccccccccccccceeEE
Q 002133 665 R-KVEGQSNASVVELKQLSSLTILDM------------------------H-------IPDAQLLLEDLISLDLERYRIF 712 (961)
Q Consensus 665 ~-~~~~~~~~~~~~l~~l~~L~~L~l------------------------~-------~~~~~~~~~~L~~l~L~~~~i~ 712 (961)
. .++ ..+..+++|+.|++ . ++..+..+++|+.++|++|.+.
T Consensus 345 ~~~~p-------~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 345 SGEIP-------KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred cCcCC-------hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 2 111 23333444444444 3 2233344455555555555543
Q ss_pred EecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCccccc
Q 002133 713 IGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIA 792 (961)
Q Consensus 713 ~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~ 792 (961)
. ..+......+.++.+.++.+............+++|+.|++++|...+.+|..+ ..++|+.|++++|.....++
T Consensus 418 ~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~----~~~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 418 G-ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF----GSKRLENLDLSRNQFSGAVP 492 (968)
T ss_pred e-ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc----ccccceEEECcCCccCCccC
Confidence 2 222223333444555554433222111111234666777776666555554432 34677777777775443333
Q ss_pred CCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEecccccc
Q 002133 793 NSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILR 872 (961)
Q Consensus 793 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~ 872 (961)
. ....+++|+.|+++++.-...++. ....+++|++|+|++|. ++...+.. +..+++|+.|++++|....
T Consensus 493 ~--~~~~l~~L~~L~Ls~N~l~~~~p~-------~~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 493 R--KLGSLSELMQLKLSENKLSGEIPD-------ELSSCKKLVSLDLSHNQ-LSGQIPAS-FSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred h--hhhhhhccCEEECcCCcceeeCCh-------HHcCccCCCEEECCCCc-ccccCChh-HhCcccCCEEECCCCcccc
Confidence 2 345677888888887533323321 12678999999999975 44443433 4889999999999997665
Q ss_pred ccccccccCCccCCCcccccccccccceeccccccccccCCCCCCCC
Q 002133 873 MIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYLETPT 919 (961)
Q Consensus 873 ~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~i~~~~~~~~ 919 (961)
.+ |..+..+++|+.|++++|+-...+|..-...+
T Consensus 562 ~~-------------p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~ 595 (968)
T PLN00113 562 EI-------------PKNLGNVESLVQVNISHNHLHGSLPSTGAFLA 595 (968)
T ss_pred cC-------------ChhHhcCcccCEEeccCCcceeeCCCcchhcc
Confidence 66 45567889999999999998888886543333
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.2e-26 Score=242.82 Aligned_cols=359 Identities=19% Similarity=0.213 Sum_probs=256.3
Q ss_pred hcCCCcEEecCCCCCCCCCCc--cCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCE
Q 002133 510 ARKNPTAISIPFRDISELPDS--LQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRT 586 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~ 586 (961)
.+...+.|++++|.+..+... .++++|+.+.+..|.++ .+|... ....+|+.|+|.+|.|.++ .+.+..++.||.
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 356678888888888776543 28888888888888876 677532 4455688888888888877 455778888888
Q ss_pred EEccCCCCCCC--ccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCC
Q 002133 587 LSFDCCHLEDV--ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (961)
Q Consensus 587 L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 663 (961)
|||+.|.|+.+ +.|..-.++++|+|++|.|+.+-.. |.++.+|.+|.|+. |.++.+|+..|.+|++|+.|+|..|.
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccc
Confidence 88888888883 6677777888888888888877543 77888888888888 78888888888888888888888887
Q ss_pred CccccCCCccchHhhcCCCCCCEEEcc-------CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCc
Q 002133 664 TRKVEGQSNASVVELKQLSSLTILDMH-------IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNS 736 (961)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~-------~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~ 736 (961)
+..+.+ ..+..|.+|+.|.+. -.+.+..+..++.++|+.|++..- ...|......++.++|+.+..
T Consensus 233 irive~------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 233 IRIVEG------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred eeeehh------hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh-hcccccccchhhhhccchhhh
Confidence 776654 345555555555554 124566777888888888876421 123444455666677776554
Q ss_pred ccchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceecccccccccc
Q 002133 737 IYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEK 816 (961)
Q Consensus 737 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~ 816 (961)
..+........++|+.|+|++|....-.+..+ ..+..|+.|+|++| .+..+... .+.++.+|++|++++ +.+..
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf---~~L~~Le~LnLs~N-si~~l~e~-af~~lssL~~LdLr~-N~ls~ 379 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSF---RVLSQLEELNLSHN-SIDHLAEG-AFVGLSSLHKLDLRS-NELSW 379 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHH---HHHHHhhhhccccc-chHHHHhh-HHHHhhhhhhhcCcC-CeEEE
Confidence 44432233456889999999987666555555 77889999999998 46666554 667788999999987 33332
Q ss_pred cc-ccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccccc
Q 002133 817 VC-GSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFN 895 (961)
Q Consensus 817 ~~-~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~ 895 (961)
.. ....+. ..+++|++|.+.+ ++++.++...+ ..+++||+|++.++. +.+|- +.++..+
T Consensus 380 ~IEDaa~~f----~gl~~LrkL~l~g-Nqlk~I~krAf-sgl~~LE~LdL~~Na-iaSIq------------~nAFe~m- 439 (873)
T KOG4194|consen 380 CIEDAAVAF----NGLPSLRKLRLTG-NQLKSIPKRAF-SGLEALEHLDLGDNA-IASIQ------------PNAFEPM- 439 (873)
T ss_pred EEecchhhh----ccchhhhheeecC-ceeeecchhhh-ccCcccceecCCCCc-ceeec------------ccccccc-
Confidence 22 222222 5699999999999 58999977654 889999999999984 44442 3344555
Q ss_pred cccceeccc
Q 002133 896 HLHSLALRR 904 (961)
Q Consensus 896 ~L~~L~l~~ 904 (961)
.|++|.+..
T Consensus 440 ~Lk~Lv~nS 448 (873)
T KOG4194|consen 440 ELKELVMNS 448 (873)
T ss_pred hhhhhhhcc
Confidence 677777654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.8e-24 Score=229.65 Aligned_cols=338 Identities=18% Similarity=0.260 Sum_probs=261.1
Q ss_pred hhcCCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCE
Q 002133 509 AARKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRT 586 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~ 586 (961)
....+++.+++..|.+..+|... ...+|+.|+|.+|.++ .+...-++.++.||+||||.|.++.+|. +|..-.++++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 34678999999999999999888 5667999999999987 5555556889999999999999998864 4777789999
Q ss_pred EEccCCCCCCC--ccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCC
Q 002133 587 LSFDCCHLEDV--ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (961)
Q Consensus 587 L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 663 (961)
|+|++|+|+.+ ..|..+.+|..|.|++|+++.+|.. |.+|++|+.|+|.. |.+..+....|..|++|+.|.+..|.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcC
Confidence 99999999984 7899999999999999999999875 66799999999999 67777655568899999999999887
Q ss_pred CccccCCCccchHhhcCCCCCCEEEccC-------cchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCc
Q 002133 664 TRKVEGQSNASVVELKQLSSLTILDMHI-------PDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNS 736 (961)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~-------~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~ 736 (961)
+..+.+ +.+-.+.+++.|++.. .+....+..|+.|+|+.|.|.......|.. .+.++.+.|+.+..
T Consensus 257 I~kL~D------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf-tqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 257 ISKLDD------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF-TQKLKELDLSSNRI 329 (873)
T ss_pred cccccC------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh-cccceeEecccccc
Confidence 776665 4566677777877762 345667888899999999887655555543 34677788887777
Q ss_pred ccchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCC-CCccCCccceeccccccccc
Q 002133 737 IYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSE-GPVIFPLLQSLFLCNLILLE 815 (961)
Q Consensus 737 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~-~~~~~~~L~~L~l~~~~~L~ 815 (961)
..+++.-...+..|+.|.|++|+...-....| .++.+|+.|+|++|..--.+.+.. .+.++|+|++|.+.+ ++++
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk 405 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLK 405 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHH---HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceee
Confidence 77877777777889999998876533222223 678899999998885433333221 455688999999988 7888
Q ss_pred cccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEecc
Q 002133 816 KVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDC 868 (961)
Q Consensus 816 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 868 (961)
.++...+ ..+++|++|++.++ -+.++-+..+ ..+ .|++|.+..-
T Consensus 406 ~I~krAf------sgl~~LE~LdL~~N-aiaSIq~nAF-e~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 406 SIPKRAF------SGLEALEHLDLGDN-AIASIQPNAF-EPM-ELKELVMNSS 449 (873)
T ss_pred ecchhhh------ccCcccceecCCCC-cceeeccccc-ccc-hhhhhhhccc
Confidence 8877665 56889999999885 4555544333 555 7777776543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=5.7e-25 Score=234.39 Aligned_cols=341 Identities=19% Similarity=0.273 Sum_probs=225.0
Q ss_pred hhcCCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCC--CCCccccCCcCCC
Q 002133 509 AARKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP--SLPLSLGSLINLR 585 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~lp~~~~~l~~L~ 585 (961)
..+..++.|.+....+..+|..+ .|.+|+.|.+.+|++. .+... ++.++.||.+++..|++. .+|..+..+..|.
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt 106 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLT 106 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHHHhhhccccccCCCCchhcccccce
Confidence 34556677777777777777666 6777777777777664 23222 256677777777777765 5677777777777
Q ss_pred EEEccCCCCCC-CccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCC
Q 002133 586 TLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (961)
Q Consensus 586 ~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 663 (961)
+|||++|++++ |..+..-+++-.|+|++|+|..+|.. +-+|+.|-.|||++ |.+..+||. +..|.+|++|.|++|.
T Consensus 107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCCCh
Confidence 77777777777 67777777777777777777777765 55677777777777 677777776 6777777777777775
Q ss_pred CccccCCCccchHhhcCCCCCCEEEcc--------CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCC
Q 002133 664 TRKVEGQSNASVVELKQLSSLTILDMH--------IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDN 735 (961)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~--------~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~ 735 (961)
+..+. +..+..+++|..|.++ +|.++..+.+|..++|+.|+
T Consensus 185 L~hfQ------LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------------------------- 233 (1255)
T KOG0444|consen 185 LNHFQ------LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------------------------- 233 (1255)
T ss_pred hhHHH------HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-------------------------
Confidence 44222 3344555555555554 34444444555555555444
Q ss_pred cccchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccc
Q 002133 736 SIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLE 815 (961)
Q Consensus 736 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~ 815 (961)
....|..+... ++|+.|+|++|.... +... .+...+|++|+++.| .++.+|. ....+++|+.|.+.+ ++|.
T Consensus 234 Lp~vPecly~l-~~LrrLNLS~N~ite-L~~~---~~~W~~lEtLNlSrN-QLt~LP~--avcKL~kL~kLy~n~-NkL~ 304 (1255)
T KOG0444|consen 234 LPIVPECLYKL-RNLRRLNLSGNKITE-LNMT---EGEWENLETLNLSRN-QLTVLPD--AVCKLTKLTKLYANN-NKLT 304 (1255)
T ss_pred CCcchHHHhhh-hhhheeccCcCceee-eecc---HHHHhhhhhhccccc-hhccchH--HHhhhHHHHHHHhcc-Cccc
Confidence 44455555444 788888888876433 2222 255678888888888 4666665 456678888888766 3332
Q ss_pred cccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccccc
Q 002133 816 KVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFN 895 (961)
Q Consensus 816 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~ 895 (961)
- ..+ +...+.+.+|+.+...+ ++|+-+|. .+..|+.|+.|.++++ .|-.+ |..+.-+|
T Consensus 305 F---eGi--PSGIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL~L~~N-rLiTL-------------PeaIHlL~ 362 (1255)
T KOG0444|consen 305 F---EGI--PSGIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKLKLDHN-RLITL-------------PEAIHLLP 362 (1255)
T ss_pred c---cCC--ccchhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHhccccc-ceeec-------------hhhhhhcC
Confidence 1 111 22347788888888877 47776653 2578888999988776 44455 45667888
Q ss_pred cccceeccccccccccCCCC
Q 002133 896 HLHSLALRRLPQLTSSGFYL 915 (961)
Q Consensus 896 ~L~~L~l~~c~~L~~i~~~~ 915 (961)
.|+.|++.+.|+|.--|...
T Consensus 363 ~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 363 DLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred CcceeeccCCcCccCCCCcc
Confidence 89999999999988766543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.3e-24 Score=231.69 Aligned_cols=314 Identities=21% Similarity=0.270 Sum_probs=223.2
Q ss_pred hcCCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCC-CCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEE
Q 002133 510 ARKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSL-QIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTL 587 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L 587 (961)
...++.||++.+|++.++...+ .++.||++.+..|++.. -+|.++| .+..|.+||||+|.+...|..+..-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 4678999999999998877666 89999999999998643 5888886 6999999999999999999999999999999
Q ss_pred EccCCCCCC-C-ccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCC-
Q 002133 588 SFDCCHLED-V-ARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT- 664 (961)
Q Consensus 588 ~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~- 664 (961)
+|++|+|.. | +-+-+|+.|-+|||++|++..+|+.+.+|.+|++|+|++| .+....-..+-.+++|++|.+++..-
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhhhhhcccccch
Confidence 999999998 5 5577899999999999999999999999999999999994 44433222345667788888887542
Q ss_pred -ccccCCCccchHhhcCCCCCCEEEcc------CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcc
Q 002133 665 -RKVEGQSNASVVELKQLSSLTILDMH------IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSI 737 (961)
Q Consensus 665 -~~~~~~~~~~~~~l~~l~~L~~L~l~------~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~ 737 (961)
.++| ..+..+.+|+.++++ .|+....+.+|..|+|++|.|.--..
T Consensus 211 l~N~P-------tsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~--------------------- 262 (1255)
T KOG0444|consen 211 LDNIP-------TSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM--------------------- 262 (1255)
T ss_pred hhcCC-------CchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec---------------------
Confidence 2344 456677778887876 46677788899999999999852110
Q ss_pred cchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccc
Q 002133 738 YLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKV 817 (961)
Q Consensus 738 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~ 817 (961)
....| .+|++|+++.|.. +.+|..+ ..++.|+.|.+.+|. +..-...+..+.+..|+.+...+ ++|+-+
T Consensus 263 ~~~~W-----~~lEtLNlSrNQL-t~LP~av---cKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aan-N~LElV 331 (1255)
T KOG0444|consen 263 TEGEW-----ENLETLNLSRNQL-TVLPDAV---CKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAAN-NKLELV 331 (1255)
T ss_pred cHHHH-----hhhhhhccccchh-ccchHHH---hhhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhc-cccccC
Confidence 11111 4566666666543 3345544 556666666665552 22222222445555666655555 444444
Q ss_pred cccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEecccccccc
Q 002133 818 CGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMI 874 (961)
Q Consensus 818 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i 874 (961)
+.+. ..++.|+.|.+.. +.|..+|.. ++-|+.|+.||+..+|+|-.-
T Consensus 332 PEgl-------cRC~kL~kL~L~~-NrLiTLPea--IHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 332 PEGL-------CRCVKLQKLKLDH-NRLITLPEA--IHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred chhh-------hhhHHHHHhcccc-cceeechhh--hhhcCCcceeeccCCcCccCC
Confidence 3221 4466666666654 456666533 466667777777776666443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.7e-21 Score=245.75 Aligned_cols=366 Identities=19% Similarity=0.244 Sum_probs=260.4
Q ss_pred hhcCCCcEEecCCCCC-------CCCCCcc-CC-CceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCcccc
Q 002133 509 AARKNPTAISIPFRDI-------SELPDSL-QC-TRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLG 579 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~-------~~lp~~~-~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~ 579 (961)
....+++.|.+..+.. ..+|..+ .+ ++|+.|.+.++.+. .+|..+ .+.+|+.|++++|.+..+|..+.
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccccccc
Confidence 4577888888865532 2355555 33 46999999988775 777765 57899999999999999999999
Q ss_pred CCcCCCEEEccCCC-CCCCccccCCCCCcEEEeccC-cCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEE
Q 002133 580 SLINLRTLSFDCCH-LEDVARVGDLAKLEILSFRNS-HIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNEL 657 (961)
Q Consensus 580 ~l~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 657 (961)
.+++|++|+|++|. +..++.++.+++|+.|++++| .+..+|..++++++|+.|++++|+.++.+|.. + ++++|++|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEE
Confidence 99999999999886 666777999999999999998 67799999999999999999999999999875 3 89999999
Q ss_pred EccCCCC-ccccCCCccchHhhcCCCCCCEEEccCcchh-----ccccccccccccceeEEE--ecc----cCCCCCCCc
Q 002133 658 YMGNSFT-RKVEGQSNASVVELKQLSSLTILDMHIPDAQ-----LLLEDLISLDLERYRIFI--GDV----WNWSGKYEC 725 (961)
Q Consensus 658 ~l~~~~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~L~~l~L~~~~i~~--~~~----~~~~~~~~~ 725 (961)
++++|.. ..++. ..++|+.|++...... ..+++|..+.+..+.... ... ......+++
T Consensus 710 ~Lsgc~~L~~~p~----------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 710 NLSGCSRLKSFPD----------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred eCCCCCCcccccc----------ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcccc
Confidence 9998842 22221 1346777777522211 123455555554422100 000 001112345
Q ss_pred cceEEecCCCcc-cchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccc
Q 002133 726 SRTLKLKLDNSI-YLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQ 804 (961)
Q Consensus 726 l~~l~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~ 804 (961)
++.+.|..+... .+|..+. .+++|+.|+|++|..++.+|... ++++|+.|++++|..+..++.. .++|+
T Consensus 780 L~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~ 849 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI----NLESLESLDLSGCSRLRTFPDI-----STNIS 849 (1153)
T ss_pred chheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC----CccccCEEECCCCCcccccccc-----ccccC
Confidence 666666654332 3566654 45899999999999888877543 6899999999999988776542 57899
Q ss_pred eeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCcc
Q 002133 805 SLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDH 884 (961)
Q Consensus 805 ~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~ 884 (961)
.|++++ +.++.++.. . ..+++|+.|++++|++|+.++.. ...+++|+.|++++|++|..++.........
T Consensus 850 ~L~Ls~-n~i~~iP~s---i----~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~ 919 (1153)
T PLN03210 850 DLNLSR-TGIEEVPWW---I----EKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEASWNGSPSEVA 919 (1153)
T ss_pred EeECCC-CCCccChHH---H----hcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCcccccccCCCCchhhh
Confidence 999988 566665332 2 67999999999999999999764 4789999999999999998775322111000
Q ss_pred CCCcccccccccccceecccccccc
Q 002133 885 ENGSMRVVNFNHLHSLALRRLPQLT 909 (961)
Q Consensus 885 ~~~~~~l~~l~~L~~L~l~~c~~L~ 909 (961)
.........+|+...+.+.+|.+|.
T Consensus 920 ~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 920 MATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred hhcccccccCCchhccccccccCCC
Confidence 0000112345566666777777765
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=3.8e-23 Score=210.47 Aligned_cols=353 Identities=22% Similarity=0.239 Sum_probs=231.6
Q ss_pred CCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEcc
Q 002133 512 KNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (961)
Q Consensus 512 ~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 590 (961)
-.+..+...+|++.++|..+ .+.+|..+++.+|.+. .+|+.... ++.|+.||...|-++.+|..++.+..|..|+|.
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhh
Confidence 34556677788888888877 8889999999999887 56666544 999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCCcEEEeccCcCCccchhhh-cCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccC
Q 002133 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIG-NLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (961)
Q Consensus 591 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 669 (961)
.|++...+.|.++..|.+|+++.|+|+.+|..++ ++.+|..||+++ |+++++|.+ +..+.+|+.|++++|.+..+|
T Consensus 215 ~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde-~clLrsL~rLDlSNN~is~Lp- 291 (565)
T KOG0472|consen 215 RNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDE-ICLLRSLERLDLSNNDISSLP- 291 (565)
T ss_pred hcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchH-HHHhhhhhhhcccCCccccCC-
Confidence 9999997799999999999999999999998866 899999999999 789999877 788999999999999888777
Q ss_pred CCccchHhhcCCCCCCEEEccCcc------------hhcccccc------------------------------------
Q 002133 670 QSNASVVELKQLSSLTILDMHIPD------------AQLLLEDL------------------------------------ 701 (961)
Q Consensus 670 ~~~~~~~~l~~l~~L~~L~l~~~~------------~~~~~~~L------------------------------------ 701 (961)
.+++++ +|+.|-+...+ ....++.|
T Consensus 292 ------~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 292 ------YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred ------cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 467777 77777664211 00001111
Q ss_pred ccccccceeEEEecccCC-CCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEE
Q 002133 702 ISLDLERYRIFIGDVWNW-SGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHL 780 (961)
Q Consensus 702 ~~l~L~~~~i~~~~~~~~-~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L 780 (961)
+.++++..+++.-+..-| .....-.....++.+....+|..+...-.-.+.+.++ ++.+..+|..+ ..+++|..|
T Consensus 365 kiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls-nn~isfv~~~l---~~l~kLt~L 440 (565)
T KOG0472|consen 365 KILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS-NNKISFVPLEL---SQLQKLTFL 440 (565)
T ss_pred hhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh-cCccccchHHH---Hhhhcceee
Confidence 111111111100000000 0000011222233233333444333321112223333 33344444444 678888888
Q ss_pred EeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccc
Q 002133 781 HVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQL 860 (961)
Q Consensus 781 ~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L 860 (961)
++++| .+..+|. ..+.+..|+.|+++.. ....++... -.+..|+.+ +...+++..+++. .+.++.+|
T Consensus 441 ~L~NN-~Ln~LP~--e~~~lv~Lq~LnlS~N-rFr~lP~~~-------y~lq~lEtl-las~nqi~~vd~~-~l~nm~nL 507 (565)
T KOG0472|consen 441 DLSNN-LLNDLPE--EMGSLVRLQTLNLSFN-RFRMLPECL-------YELQTLETL-LASNNQIGSVDPS-GLKNMRNL 507 (565)
T ss_pred ecccc-hhhhcch--hhhhhhhhheeccccc-ccccchHHH-------hhHHHHHHH-HhccccccccChH-Hhhhhhhc
Confidence 88877 4566665 4555677888888762 333332110 111223333 3444678888664 45888899
Q ss_pred cEEeEeccccccccccccccCCccCCCcccccccccccceecccccc
Q 002133 861 EELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQ 907 (961)
Q Consensus 861 ~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 907 (961)
..||+.++ .+..+| ..++++.+|++|++++.|.
T Consensus 508 ~tLDL~nN-dlq~IP-------------p~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 508 TTLDLQNN-DLQQIP-------------PILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ceeccCCC-chhhCC-------------hhhccccceeEEEecCCcc
Confidence 99999887 566773 4568889999999998864
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=8.3e-22 Score=200.80 Aligned_cols=335 Identities=22% Similarity=0.284 Sum_probs=203.3
Q ss_pred cCCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCcccc-CCcCCCEEE
Q 002133 511 RKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLG-SLINLRTLS 588 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~-~l~~L~~L~ 588 (961)
++.+++++...|.+..+|+.+ .+.+|..|++..|.+. .+|+ |.+|..|..|+++.|.+..+|...+ ++.+|.+||
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 666777777777777777766 6777777777777775 5663 4677777777777777777776655 677777777
Q ss_pred ccCCCCCC-CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCcc--CCEEE-------
Q 002133 589 FDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSR--LNELY------- 658 (961)
Q Consensus 589 L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~--L~~L~------- 658 (961)
|+.|++++ |..++.+.+|++||+++|.|+.+|.+++++ +|+.|-+.| |-+..+-...+.+=+. |++|.
T Consensus 259 LRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG-NPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 259 LRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEG-NPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred ccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcC-CchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 77777777 677777777777777777777777777777 777777777 4444443332221110 22221
Q ss_pred ccCCCCc--cccCCCccchHhhcCCCCCCEEEcc------Ccchhccccc---cccccccceeEEEecccCCCCCCC-cc
Q 002133 659 MGNSFTR--KVEGQSNASVVELKQLSSLTILDMH------IPDAQLLLED---LISLDLERYRIFIGDVWNWSGKYE-CS 726 (961)
Q Consensus 659 l~~~~~~--~~~~~~~~~~~~l~~l~~L~~L~l~------~~~~~~~~~~---L~~l~L~~~~i~~~~~~~~~~~~~-~l 726 (961)
++...-+ .-+......+.....+.+.+.|+++ +|+....... ....++++|++. ..+.-..... ..
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~--elPk~L~~lkelv 414 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC--ELPKRLVELKELV 414 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh--hhhhhhHHHHHHH
Confidence 0100000 0000112233344445556666665 3443332222 456677777763 2221111111 11
Q ss_pred ceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCcccee
Q 002133 727 RTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSL 806 (961)
Q Consensus 727 ~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L 806 (961)
..+.++. +...++......+++|..|+|++| .+.++|.++ +.+..|+.|+++.| ....+|. ....+..|+.+
T Consensus 415 T~l~lsn-n~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~---~~lv~Lq~LnlS~N-rFr~lP~--~~y~lq~lEtl 486 (565)
T KOG0472|consen 415 TDLVLSN-NKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEM---GSLVRLQTLNLSFN-RFRMLPE--CLYELQTLETL 486 (565)
T ss_pred HHHHhhc-CccccchHHHHhhhcceeeecccc-hhhhcchhh---hhhhhhheeccccc-ccccchH--HHhhHHHHHHH
Confidence 1122222 222333334445699999999886 556788877 88889999999999 3344442 11222233443
Q ss_pred ccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEecccc
Q 002133 807 FLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKI 870 (961)
Q Consensus 807 ~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 870 (961)
-.++ .++..+....+ ..|.+|..|++.+ +.+..+||. ++++++|++|+++++|.
T Consensus 487 las~-nqi~~vd~~~l------~nm~nL~tLDL~n-Ndlq~IPp~--LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 487 LASN-NQIGSVDPSGL------KNMRNLTTLDLQN-NDLQQIPPI--LGNMTNLRHLELDGNPF 540 (565)
T ss_pred Hhcc-ccccccChHHh------hhhhhcceeccCC-CchhhCChh--hccccceeEEEecCCcc
Confidence 3333 56666643322 6799999999998 588899865 79999999999999974
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=7.9e-21 Score=213.31 Aligned_cols=359 Identities=21% Similarity=0.209 Sum_probs=225.6
Q ss_pred CcEEecCCCCCCCCCCcc--CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccC
Q 002133 514 PTAISIPFRDISELPDSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (961)
Q Consensus 514 l~~L~l~~~~~~~lp~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~ 591 (961)
+.+|++..|.+-..|-.+ ++-+|++|++++|.+. ..|..+ ..+.+|+.|+++.|.+..+|.+++++.+|++|.|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 778888888876655322 5666999999999886 667665 678999999999999999999999999999999999
Q ss_pred CCCCC-CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCC---------------------------------
Q 002133 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNC--------------------------------- 637 (961)
Q Consensus 592 ~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~--------------------------------- 637 (961)
|.+.. |.++..+.+|++|++++|.+..+|..+..++.+..+..++|
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~ 180 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLT 180 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhh
Confidence 99887 89999999999999999999888865544333333333322
Q ss_pred -------CCCcccChHHHhcCccCCEEE--------------------ccCCCCcccc-----C------CC----ccch
Q 002133 638 -------SKLKVIKPEVISRLSRLNELY--------------------MGNSFTRKVE-----G------QS----NASV 675 (961)
Q Consensus 638 -------~~l~~~~~~~l~~l~~L~~L~--------------------l~~~~~~~~~-----~------~~----~~~~ 675 (961)
+.+..+ .+..+.+|+.|. .+.|.+.... . .+ ....
T Consensus 181 ~~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp 257 (1081)
T KOG0618|consen 181 HQLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP 257 (1081)
T ss_pred eeeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch
Confidence 111110 022222222222 2222211000 0 00 0011
Q ss_pred HhhcCCCCCCEEEcc------CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHH-------
Q 002133 676 VELKQLSSLTILDMH------IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYG------- 742 (961)
Q Consensus 676 ~~l~~l~~L~~L~l~------~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~------- 742 (961)
..+..+.+|+.+... ++.......+|..+....|.+. ..+.......+++.+.|..+....+|+.
T Consensus 258 ~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~--yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 258 EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE--YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh--hCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 334455666666553 2233333344444444444432 1222222333444444444333333322
Q ss_pred ------------------HHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccc
Q 002133 743 ------------------IKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQ 804 (961)
Q Consensus 743 ------------------~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~ 804 (961)
-...++.|+.|.+.+|.......+.+ .++++||.|+|++| .+..++.. ....++.|+
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l---~~~~hLKVLhLsyN-rL~~fpas-~~~kle~Le 410 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL---VNFKHLKVLHLSYN-RLNSFPAS-KLRKLEELE 410 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh---ccccceeeeeeccc-ccccCCHH-HHhchHHhH
Confidence 12234567788888887766555444 88999999999998 46666554 667788999
Q ss_pred eeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCcc
Q 002133 805 SLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDH 884 (961)
Q Consensus 805 ~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~ 884 (961)
.|++++ ++|+.++... ..++.|+.|...+ +.|..+|. +..+++|+.+|++.+ +|+.+...+.
T Consensus 411 eL~LSG-NkL~~Lp~tv-------a~~~~L~tL~ahs-N~l~~fPe---~~~l~qL~~lDlS~N-~L~~~~l~~~----- 472 (1081)
T KOG0618|consen 411 ELNLSG-NKLTTLPDTV-------ANLGRLHTLRAHS-NQLLSFPE---LAQLPQLKVLDLSCN-NLSEVTLPEA----- 472 (1081)
T ss_pred HHhccc-chhhhhhHHH-------HhhhhhHHHhhcC-Cceeechh---hhhcCcceEEecccc-hhhhhhhhhh-----
Confidence 999998 7787775321 4577888887766 46666652 478899999999866 5665532111
Q ss_pred CCCcccccccccccceecccccccc
Q 002133 885 ENGSMRVVNFNHLHSLALRRLPQLT 909 (961)
Q Consensus 885 ~~~~~~l~~l~~L~~L~l~~c~~L~ 909 (961)
... |+|++|++++.+++.
T Consensus 473 ------~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 473 ------LPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred ------CCC-cccceeeccCCcccc
Confidence 111 789999998887644
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=7e-18 Score=189.91 Aligned_cols=217 Identities=16% Similarity=0.129 Sum_probs=120.6
Q ss_pred CcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEcc------Ccchhcccccc
Q 002133 628 RLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH------IPDAQLLLEDL 701 (961)
Q Consensus 628 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~------~~~~~~~~~~L 701 (961)
+|++++++. +++..+| .+++.+.+|+.+.+.+|++..++ ..+...++|+.|.+. ++......+.|
T Consensus 242 nl~~~dis~-n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp-------~ri~~~~~L~~l~~~~nel~yip~~le~~~sL 312 (1081)
T KOG0618|consen 242 NLQYLDISH-NNLSNLP-EWIGACANLEALNANHNRLVALP-------LRISRITSLVSLSAAYNELEYIPPFLEGLKSL 312 (1081)
T ss_pred cceeeecch-hhhhcch-HHHHhcccceEecccchhHHhhH-------HHHhhhhhHHHHHhhhhhhhhCCCccccccee
Confidence 455555555 4556666 55777777777777777665444 233333333333332 22333334444
Q ss_pred ccccccceeEEEecc-----------------------cC-CCCCCCccceEEecCCCcccchHHHHHhhccccEEEccc
Q 002133 702 ISLDLERYRIFIGDV-----------------------WN-WSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDN 757 (961)
Q Consensus 702 ~~l~L~~~~i~~~~~-----------------------~~-~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 757 (961)
+.|+|..|.+..-.. +. .......++.+++..+....--......+++|+.|+|++
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 444444444321110 00 001112233333333222111111223457899999998
Q ss_pred ccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEE
Q 002133 758 LNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRII 837 (961)
Q Consensus 758 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L 837 (961)
|..-......+ .+++.|+.|+|++| .++.++. ....++.|+.|...+ +.+..++. ...++.|+.+
T Consensus 393 NrL~~fpas~~---~kle~LeeL~LSGN-kL~~Lp~--tva~~~~L~tL~ahs-N~l~~fPe--------~~~l~qL~~l 457 (1081)
T KOG0618|consen 393 NRLNSFPASKL---RKLEELEELNLSGN-KLTTLPD--TVANLGRLHTLRAHS-NQLLSFPE--------LAQLPQLKVL 457 (1081)
T ss_pred cccccCCHHHH---hchHHhHHHhcccc-hhhhhhH--HHHhhhhhHHHhhcC-Cceeechh--------hhhcCcceEE
Confidence 76544333333 78889999999998 5777775 566688888887766 55555531 1567889999
Q ss_pred EeecCCCCcccCChHHHhhcccccEEeEecccc
Q 002133 838 NIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKI 870 (961)
Q Consensus 838 ~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 870 (961)
+++. ++|+.+....... -|+|++||++++..
T Consensus 458 DlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 458 DLSC-NNLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred eccc-chhhhhhhhhhCC-CcccceeeccCCcc
Confidence 9985 6777663221111 16899999999875
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=9e-18 Score=151.74 Aligned_cols=154 Identities=22% Similarity=0.387 Sum_probs=133.4
Q ss_pred cCCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEc
Q 002133 511 RKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 589 (961)
...+.+|.+++|.+..+|+.+ .+.+|++|++++|++. .+|.++ +.++.||.|+++-|.+..+|..|+.++.|++|||
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 457888889999998888877 8999999999999887 778776 7899999999999988888999999999999999
Q ss_pred cCCCCCC---CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcc
Q 002133 590 DCCHLED---VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRK 666 (961)
Q Consensus 590 ~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 666 (961)
.+|++.+ |..|..+..|+.|+++.|.+.-+|..++++++|+.|.+.+ +.+-++|.. ++.++.|++|++.+|.+..
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhcccceeee
Confidence 9998877 6888888999999999999999999999999999999998 566678776 8999999999999887776
Q ss_pred cc
Q 002133 667 VE 668 (961)
Q Consensus 667 ~~ 668 (961)
+|
T Consensus 188 lp 189 (264)
T KOG0617|consen 188 LP 189 (264)
T ss_pred cC
Confidence 66
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=3.6e-15 Score=174.40 Aligned_cols=256 Identities=18% Similarity=0.174 Sum_probs=155.2
Q ss_pred CCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccC
Q 002133 512 KNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (961)
Q Consensus 512 ~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~ 591 (961)
.+-..|+++.+.+..+|..+. ++|+.|.+.+|.++ .+|. .+++|++|++++|.++.+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 345678888888888887552 47888888888876 4663 357888888888888888753 46788888888
Q ss_pred CCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCC
Q 002133 592 CHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQS 671 (961)
Q Consensus 592 ~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 671 (961)
|.++.++. .+.+|+.|++++|.++.+|.. +++|+.|++++ |.++.+|.. ..+|+.|++++|.+..+|.
T Consensus 272 N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l----p~~L~~L~Ls~N~L~~LP~-- 339 (788)
T PRK15387 272 NPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL----PSELCKLWAYNNQLTSLPT-- 339 (788)
T ss_pred Cchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC----cccccccccccCccccccc--
Confidence 88777332 235677888888888888752 46788888888 467776542 2357777787776655441
Q ss_pred ccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhcccc
Q 002133 672 NASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTE 751 (961)
Q Consensus 672 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~ 751 (961)
+ +.+|+.|+|++|.+.. +|. ..++|+
T Consensus 340 ---------l----------------p~~Lq~LdLS~N~Ls~-------------------------LP~----lp~~L~ 365 (788)
T PRK15387 340 ---------L----------------PSGLQELSVSDNQLAS-------------------------LPT----LPSELY 365 (788)
T ss_pred ---------c----------------ccccceEecCCCccCC-------------------------CCC----CCcccc
Confidence 0 1234455555555421 000 113445
Q ss_pred EEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcC
Q 002133 752 DLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSF 831 (961)
Q Consensus 752 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l 831 (961)
.|++++|... .+|.. .++|+.|++++|. +..++. .+++|+.|+++++ .++.++. .+
T Consensus 366 ~L~Ls~N~L~-~LP~l------~~~L~~LdLs~N~-Lt~LP~-----l~s~L~~LdLS~N-~LssIP~----------l~ 421 (788)
T PRK15387 366 KLWAYNNRLT-SLPAL------PSGLKELIVSGNR-LTSLPV-----LPSELKELMVSGN-RLTSLPM----------LP 421 (788)
T ss_pred eehhhccccc-cCccc------ccccceEEecCCc-ccCCCC-----cccCCCEEEccCC-cCCCCCc----------ch
Confidence 5555554322 23321 2356666666653 333332 1345666666662 3443321 12
Q ss_pred CCccEEEeecCCCCcccCChHHHhhcccccEEeEeccc
Q 002133 832 TNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCK 869 (961)
Q Consensus 832 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 869 (961)
.+|+.|+++++ +++.+|.. +..+++|+.|++++|+
T Consensus 422 ~~L~~L~Ls~N-qLt~LP~s--l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 422 SGLLSLSVYRN-QLTRLPES--LIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhhccC-cccccChH--HhhccCCCeEECCCCC
Confidence 35666777663 56666532 3567777777777775
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.7e-17 Score=149.94 Aligned_cols=173 Identities=24% Similarity=0.391 Sum_probs=146.1
Q ss_pred CCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC-Ccccc
Q 002133 523 DISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VARVG 601 (961)
Q Consensus 523 ~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~~~ 601 (961)
++..+|..+++++++.|.+++|.++ .+|+.+ ..+.+|++|++++|+++.+|.+++.++.|+.|++.-|++.. |..|+
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 3456677779999999999999998 677776 78999999999999999999999999999999999999887 89999
Q ss_pred CCCCCcEEEeccCcCC--ccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhc
Q 002133 602 DLAKLEILSFRNSHIE--QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELK 679 (961)
Q Consensus 602 ~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 679 (961)
.++.|+.||+.+|++. .+|..|..++.|+.|++++ +.+.-+|++ ++++++|+.|.+..|.+-.+| .+++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll~lp-------keig 170 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLLSLP-------KEIG 170 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchhhCc-------HHHH
Confidence 9999999999999887 7899999999999999999 788889988 899999999999998777777 5777
Q ss_pred CCCCCCEEEccCcchhccccccccccc
Q 002133 680 QLSSLTILDMHIPDAQLLLEDLISLDL 706 (961)
Q Consensus 680 ~l~~L~~L~l~~~~~~~~~~~L~~l~L 706 (961)
.++.|+.|++........++.+..+++
T Consensus 171 ~lt~lrelhiqgnrl~vlppel~~l~l 197 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLPPELANLDL 197 (264)
T ss_pred HHHHHHHHhcccceeeecChhhhhhhh
Confidence 777777777764333333333333333
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.4e-13 Score=161.14 Aligned_cols=233 Identities=17% Similarity=0.098 Sum_probs=147.2
Q ss_pred cCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEcc
Q 002133 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 590 (961)
+.+++.|++.+|++..+|.. .++|++|++++|.++ .+|. ..++|+.|++++|.+..+|..+ .+|+.|+++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKLWIF 290 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhch---hhcCEEECc
Confidence 45789999999999988863 688999999999887 5664 2478999999999998887643 568899999
Q ss_pred CCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCC
Q 002133 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (961)
Q Consensus 591 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 670 (961)
+|+++.++. .+++|+.|++++|.++.+|... .+|+.|++++ +.++.+|.. ..+|++|++++|.+..+|..
T Consensus 291 ~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~-N~L~~LP~l----p~~Lq~LdLS~N~Ls~LP~l 360 (788)
T PRK15387 291 GNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYN-NQLTSLPTL----PSGLQELSVSDNQLASLPTL 360 (788)
T ss_pred CCccccccc--cccccceeECCCCccccCCCCc---cccccccccc-Ccccccccc----ccccceEecCCCccCCCCCC
Confidence 999888433 3478999999999999887632 4577888888 567777641 25789999999987766631
Q ss_pred CccchHhhcCCCCCCEEEcc---CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhh
Q 002133 671 SNASVVELKQLSSLTILDMH---IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLL 747 (961)
Q Consensus 671 ~~~~~~~l~~l~~L~~L~l~---~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l 747 (961)
. .+|+.|+++ +......+.+|..++|++|.+.. .+. ....++.+.++.+....+|.. +
T Consensus 361 -------p---~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~--LP~---l~s~L~~LdLS~N~LssIP~l----~ 421 (788)
T PRK15387 361 -------P---SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS--LPV---LPSELKELMVSGNRLTSLPML----P 421 (788)
T ss_pred -------C---cccceehhhccccccCcccccccceEEecCCcccC--CCC---cccCCCEEEccCCcCCCCCcc----h
Confidence 1 223333332 11111122355666666666531 111 122344444444333333321 2
Q ss_pred ccccEEEcccccCcccccccccCCCCccCCcEEEeecCC
Q 002133 748 KTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDP 786 (961)
Q Consensus 748 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 786 (961)
.+|+.|++++|.. +.+|..+ ..+++|+.|+|++|+
T Consensus 422 ~~L~~L~Ls~NqL-t~LP~sl---~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 422 SGLLSLSVYRNQL-TRLPESL---IHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhhccCcc-cccChHH---hhccCCCeEECCCCC
Confidence 3445555555432 2344443 445555555555554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.3e-13 Score=162.69 Aligned_cols=138 Identities=14% Similarity=0.333 Sum_probs=73.0
Q ss_pred CCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccC
Q 002133 512 KNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (961)
Q Consensus 512 ~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~ 591 (961)
++...|.++++.+..+|..+ .++|+.|++++|.+. .+|..++ ++|++|++++|.++.+|..+. .+|+.|+|++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 34566777777766666533 235666666666665 4555442 356666666666666665432 3566666666
Q ss_pred CCCCC-CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCC
Q 002133 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (961)
Q Consensus 592 ~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 664 (961)
|++.. |..+. .+|+.|++++|.++.+|..+. ++|+.|++++ |.++.+|.. +. ++|+.|++++|.+
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSL 316 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCcc
Confidence 65555 33222 345555555555555554332 3555555555 344444432 11 2445555554433
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=2.4e-15 Score=154.01 Aligned_cols=294 Identities=19% Similarity=0.155 Sum_probs=166.8
Q ss_pred CCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccC-CCCCC-C-
Q 002133 522 RDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDC-CHLED-V- 597 (961)
Q Consensus 522 ~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~-~~l~~-~- 597 (961)
..+.++|..+ -+....+.|..|.++ .+|+..|+.+++||.||||+|.|+.| |..|.++..|-.|-+-+ |+|++ +
T Consensus 56 ~GL~eVP~~L-P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANL-PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcccC-CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 3445555432 134566777888876 78888888888888888888888877 77788888777776666 67877 3
Q ss_pred ccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchH
Q 002133 598 ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVV 676 (961)
Q Consensus 598 ~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 676 (961)
..|++|..|+.|.+..|++.-++.. +..|++|..|.+.+ +.+..++...+..+.+++++.+..|.+.
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~i----------- 201 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFI----------- 201 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccc-----------
Confidence 6678888888888888877765543 77788888888877 6777777766777778888777655311
Q ss_pred hhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCcc-ceEEecCCCcccchHHHHHhhccccEEEc
Q 002133 677 ELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECS-RTLKLKLDNSIYLGYGIKKLLKTTEDLYL 755 (961)
Q Consensus 677 ~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l-~~l~L~~~~~~~~~~~~~~~l~~L~~L~L 755 (961)
...+++.+....-..+...+...-..-..+.+.++.......+......+ ..+..........|..-+..+++|+.|+|
T Consensus 202 cdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 202 CDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred cccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 11122222211000011111111111111111111100000000000000 00000000111123333445677888888
Q ss_pred ccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCcc
Q 002133 756 DNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLR 835 (961)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~ 835 (961)
++|.....-..+| .+...++.|.|..| .++.+... .+.++..|+.|++.+ ++++.+.++.| ..+.+|.
T Consensus 282 snN~i~~i~~~aF---e~~a~l~eL~L~~N-~l~~v~~~-~f~~ls~L~tL~L~~-N~it~~~~~aF------~~~~~l~ 349 (498)
T KOG4237|consen 282 SNNKITRIEDGAF---EGAAELQELYLTRN-KLEFVSSG-MFQGLSGLKTLSLYD-NQITTVAPGAF------QTLFSLS 349 (498)
T ss_pred CCCccchhhhhhh---cchhhhhhhhcCcc-hHHHHHHH-hhhccccceeeeecC-CeeEEEecccc------cccceee
Confidence 8776655555555 67777888888777 45555433 556677777777777 66666655544 4456677
Q ss_pred EEEeec
Q 002133 836 IINIEQ 841 (961)
Q Consensus 836 ~L~l~~ 841 (961)
+|.+-.
T Consensus 350 ~l~l~~ 355 (498)
T KOG4237|consen 350 TLNLLS 355 (498)
T ss_pred eeehcc
Confidence 776655
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=3.1e-13 Score=159.52 Aligned_cols=228 Identities=16% Similarity=0.227 Sum_probs=159.7
Q ss_pred hcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEc
Q 002133 510 ARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 589 (961)
.++.++.|++++|.+..+|... .++|+.|++++|.+. .+|..+ ..+|+.|+|++|.+..+|..+. .+|++|++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT-SIPATL---PDTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc-cCChhh---hccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 4678999999999999998765 368999999999987 677755 3579999999999999998764 58999999
Q ss_pred cCCCCCC-CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 590 DCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 590 ~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
++|+++. |..+. .+|++|++++|.++.+|..+. ++|+.|++++ |.+..+|.. + .++|+.|++++|.+..++
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~LP 341 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLEAGENALTSLP 341 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceeccccCCccccCC
Confidence 9999988 45443 589999999999999987553 4799999999 677788764 2 368999999999776665
Q ss_pred CCCccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhc
Q 002133 669 GQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLK 748 (961)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~ 748 (961)
. .+ .++|+.|++ ++|.+.. .+.. .++.++.+.|+.+....+|..+. .
T Consensus 342 ~-------~l--~~sL~~L~L-----------------s~N~L~~--LP~~--lp~~L~~LdLs~N~Lt~LP~~l~---~ 388 (754)
T PRK15370 342 A-------SL--PPELQVLDV-----------------SKNQITV--LPET--LPPTITTLDVSRNALTNLPENLP---A 388 (754)
T ss_pred h-------hh--cCcccEEEC-----------------CCCCCCc--CChh--hcCCcCEEECCCCcCCCCCHhHH---H
Confidence 3 11 134444444 4443321 1110 11234444444444334454433 4
Q ss_pred cccEEEcccccCcccccccccC-CCCccCCcEEEeecCC
Q 002133 749 TTEDLYLDNLNGIQNIVQELDN-GEGFPRLKHLHVQNDP 786 (961)
Q Consensus 749 ~L~~L~L~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~ 786 (961)
+|+.|++++|... .+|..++. ...++++..|++.+|+
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCC
Confidence 6778888886543 45543311 2345778888888886
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=9.7e-15 Score=149.65 Aligned_cols=291 Identities=19% Similarity=0.216 Sum_probs=193.6
Q ss_pred CCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEecc-CcCCccchh-h
Q 002133 549 QIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRN-SHIEQLPEQ-I 623 (961)
Q Consensus 549 ~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~-~~l~~lp~~-~ 623 (961)
.+|..+ .+.-..++|..|.|+.||+ +|+.+++||.|||++|+|+. |+.|.++..|..|-+.+ |+|+.+|+. |
T Consensus 60 eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 60 EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 566544 3466889999999999965 59999999999999999988 68999999998887776 899999987 8
Q ss_pred hcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccCcchhcc--cccc
Q 002133 624 GNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIPDAQLL--LEDL 701 (961)
Q Consensus 624 ~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~L 701 (961)
++|..|+.|.+.- +.+.-++...|..|++|..|.+..|.+..+.. ..+..+..++.+.+...+.... ++.+
T Consensus 137 ~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~------~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 137 GGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSICK------GTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccchhhhhhcc------ccccchhccchHhhhcCccccccccchh
Confidence 9999999999988 68888889999999999999999998877764 3566666666666653332221 2222
Q ss_pred ccccccceeEEEecccCCCCCCCccceEEecCCCcccchHH-HHHhhccccEEEcccccCcccccccccCCCCccCCcEE
Q 002133 702 ISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYG-IKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHL 780 (961)
Q Consensus 702 ~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L 780 (961)
.. ++..+.+.. .|.. +..-..+........+.. +...+.++.+=-.+.|......|.. .+..+++|+.|
T Consensus 210 a~-~~a~~~iet----sgar---c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~--cf~~L~~L~~l 279 (498)
T KOG4237|consen 210 AD-DLAMNPIET----SGAR---CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK--CFKKLPNLRKL 279 (498)
T ss_pred hh-HHhhchhhc----ccce---ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH--HHhhcccceEe
Confidence 10 111222211 1111 111111111111111110 0011112211112233222222222 24889999999
Q ss_pred EeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccc
Q 002133 781 HVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQL 860 (961)
Q Consensus 781 ~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L 860 (961)
+|++| .++.+... .+.....++.|.+.. ++++.+..+.+ ..+..|+.|++.+ ++++.+.+.. +..+.+|
T Consensus 280 nlsnN-~i~~i~~~-aFe~~a~l~eL~L~~-N~l~~v~~~~f------~~ls~L~tL~L~~-N~it~~~~~a-F~~~~~l 348 (498)
T KOG4237|consen 280 NLSNN-KITRIEDG-AFEGAAELQELYLTR-NKLEFVSSGMF------QGLSGLKTLSLYD-NQITTVAPGA-FQTLFSL 348 (498)
T ss_pred ccCCC-ccchhhhh-hhcchhhhhhhhcCc-chHHHHHHHhh------hccccceeeeecC-CeeEEEeccc-cccccee
Confidence 99998 56666544 566678888888887 77887776655 6789999999999 5788886654 4888899
Q ss_pred cEEeEecccc
Q 002133 861 EELEVTDCKI 870 (961)
Q Consensus 861 ~~L~l~~c~~ 870 (961)
.+|.+-.+|-
T Consensus 349 ~~l~l~~Np~ 358 (498)
T KOG4237|consen 349 STLNLLSNPF 358 (498)
T ss_pred eeeehccCcc
Confidence 9998876653
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=6.6e-11 Score=149.40 Aligned_cols=293 Identities=17% Similarity=0.211 Sum_probs=176.9
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHh
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQL 228 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l 228 (961)
....++-|...++.+-+ ....+++.|+|++|.||||++.++.+. ++.++|+++.. ..+...+...++..+
T Consensus 12 ~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHH
Confidence 34567788766665532 246789999999999999999998853 23588999964 446667777776666
Q ss_pred CCCccC-------------CCCHHHHHHHHHHHHHc-CCcEEEEEcccccccc--cccccCCCCCCCcccccCCCceEEE
Q 002133 229 GLEIVR-------------PDSLVEKANQLRQALKK-KKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTLL 292 (961)
Q Consensus 229 ~~~~~~-------------~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~gs~Il 292 (961)
+..... ..+.......+...+.. +.+++|||||+...++ ...+...+-. ...++.++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~------~~~~~~~lv 156 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR------HQPENLTLV 156 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH------hCCCCeEEE
Confidence 311111 01223344445555543 5789999999966421 1111111111 023567888
Q ss_pred EEecchhhhhh-c-CCCCceEEcc----CCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHhccC
Q 002133 293 LASRDQHVLRI-N-MSNPRIFSIS----TLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQ 366 (961)
Q Consensus 293 vTtR~~~v~~~-~-~~~~~~~~l~----~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~ 366 (961)
||||....... . .......++. +|+.+|+.++|....+.... .+.+.+|.+.++|.|+++..++..++..
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 99998432100 0 0112245555 99999999999877654322 2346789999999999999998777643
Q ss_pred ChHHHHHHHHHHHhcCCCccccc-ccc-cch-hHhhhhcCcHhHHHHHHHhcCCCCCCCCChhhHHHHHHHhCccccccc
Q 002133 367 STHVWKDAINWLRKSNPRKIKGM-DAD-LSS-IELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGID 443 (961)
Q Consensus 367 ~~~~w~~~~~~l~~~~~~~~~~~-~~~-~~~-l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~ 443 (961)
... .......+ .+. ... ... ..-.|+.||++.+..+...|+++. ++.+ +.. . +.+.
T Consensus 233 ~~~-~~~~~~~~--------~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~-l~~-----~-l~~~-- 291 (903)
T PRK04841 233 NSS-LHDSARRL--------AGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDA-LIV-----R-VTGE-- 291 (903)
T ss_pred CCc-hhhhhHhh--------cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHH-HHH-----H-HcCC--
Confidence 210 00111111 000 011 222 333478999999999999999985 4433 222 1 1111
Q ss_pred hHHHHHHHHHHHHHHhhcccccc-cC-CCCCeEeehHHHHHHHHHHh
Q 002133 444 TLEVARNRVYTLMDHLKGPCLLL-NG-DTEDHVKMHQIIHALAVLIA 488 (961)
Q Consensus 444 ~~~~~~~~~~~~i~~L~~~~l~~-~~-~~~~~~~mH~lv~~~~~~~~ 488 (961)
.++ .+.++.|...+++. .. +....|+.|++++++++...
T Consensus 292 --~~~----~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 --ENG----QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CcH----HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 112 34566777778764 22 24458999999999998764
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=1.7e-09 Score=122.24 Aligned_cols=290 Identities=18% Similarity=0.165 Sum_probs=175.1
Q ss_pred ccccCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 151 YVHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
+..++||++++++|...+. ......+.|+|++|+|||++++.+++........-..+++++....+...++.+++.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4568999999999988874 234566889999999999999999998765432335677777777788899999999
Q ss_pred HhCCC-cc-CCCCHHHHHHHHHHHHHc-CCcEEEEEccccccc------ccccccCCCCCCCcccccCCCc--eEEEEEe
Q 002133 227 QLGLE-IV-RPDSLVEKANQLRQALKK-KKRVLVILDDIWTQI------NLDDIGIPFWDGEKQSVDNQGR--WTLLLAS 295 (961)
Q Consensus 227 ~l~~~-~~-~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~~~~~~~~g--s~IlvTt 295 (961)
++... .. ...+..+....+.+.+.. +++.+||||+++... .+..+.. .+. ...+ ..+|.++
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~-~~~-------~~~~~~v~vI~i~ 180 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLR-AHE-------EYPGARIGVIGIS 180 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHH-hhh-------ccCCCeEEEEEEE
Confidence 98652 21 112455667777777754 456889999998753 1112211 111 1223 3356666
Q ss_pred cchhhhhh------cCCCCceEEccCCCHHHHHHHHHHHhCCC-----CCCCchhHHHHHHHHhhCCchHHHHHHHHHhc
Q 002133 296 RDQHVLRI------NMSNPRIFSISTLADGEAKSLFEKIVGDS-----AKESDCRAIGVEIVGKCGGLPIAVSTIANALK 364 (961)
Q Consensus 296 R~~~v~~~------~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~-----~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~ 364 (961)
....+... ..-....+.+.+++.++..+++..++... ..+..++.+++......|..+.|+.++-.+..
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55433211 01112467999999999999999876321 11222223333333334667788777654321
Q ss_pred -----cC---ChHHHHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHHHHHhcCC-CC-CCCCChhhHHHH--H
Q 002133 365 -----GQ---STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLL-ND-GSRLPIDDLIRY--V 432 (961)
Q Consensus 365 -----~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~f-p~-~~~i~~~~li~~--w 432 (961)
+. +.++.+.+.+... ...+.-.+..||.+.|..+..++-. .. ...+...++... .
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~ 327 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKE 327 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 11 4556666655442 2234556889999888877665533 21 134555555442 2
Q ss_pred HHhCccccccchHHHHHHHHHHHHHHhhcccccc
Q 002133 433 FALDNLFTGIDTLEVARNRVYTLMDHLKGPCLLL 466 (961)
Q Consensus 433 ~a~g~~~~~~~~~~~~~~~~~~~i~~L~~~~l~~ 466 (961)
+++. +- .. ......+.+++..|...+++.
T Consensus 328 l~~~-~~--~~--~~~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 328 LCEE-LG--YE--PRTHTRFYEYINKLDMLGIIN 356 (394)
T ss_pred HHHH-cC--CC--cCcHHHHHHHHHHHHhcCCeE
Confidence 2221 10 00 012344566778888888885
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.19 E-value=6.5e-09 Score=116.26 Aligned_cols=298 Identities=15% Similarity=0.166 Sum_probs=173.1
Q ss_pred ccccCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC-CC---CEEEEEEecCCCCHHHHHH
Q 002133 151 YVHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKED-LF---DVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~ 222 (961)
+..++||++++++|...+. ......+.|+|++|+|||++++.+++...... .. -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 3468999999999999886 23456789999999999999999998764321 11 2457888877778888999
Q ss_pred HHHHHh---CCCccCC-CCHHHHHHHHHHHHH-cCCcEEEEEccccccc-ccccccCCCCCC-CcccccCCCceEEEEEe
Q 002133 223 RIADQL---GLEIVRP-DSLVEKANQLRQALK-KKKRVLVILDDIWTQI-NLDDIGIPFWDG-EKQSVDNQGRWTLLLAS 295 (961)
Q Consensus 223 ~i~~~l---~~~~~~~-~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~-~~~~l~~~~~~~-~~~~~~~~~gs~IlvTt 295 (961)
+|+.++ +...+.. .+..+....+.+.+. .+++++||||+++... ..+.+...+... ..... .+....+|.+|
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~-~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDL-DNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCC-CCCeEEEEEEE
Confidence 999988 4332221 234555666666664 3467899999998762 111110000000 00000 11334455555
Q ss_pred cchhhhh----h-cCC-CCceEEccCCCHHHHHHHHHHHhC---C-CCCCCchhHHHHHHHHhhCCchHHH-HHHHHHh-
Q 002133 296 RDQHVLR----I-NMS-NPRIFSISTLADGEAKSLFEKIVG---D-SAKESDCRAIGVEIVGKCGGLPIAV-STIANAL- 363 (961)
Q Consensus 296 R~~~v~~----~-~~~-~~~~~~l~~L~~~~s~~Lf~~~~~---~-~~~~~~~~~~~~~i~~~c~glPLai-~~~~~~L- 363 (961)
....... . ... ....+.+++++.++..+++..++. . ...+++..+.+.+++....|.|-.+ .++-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4433211 0 001 124689999999999999998764 1 1122333334556677777887443 3322221
Q ss_pred ---c-c---CChHHHHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHHHHHhcCC--CCCCCCChhhHHHHHHH
Q 002133 364 ---K-G---QSTHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLL--NDGSRLPIDDLIRYVFA 434 (961)
Q Consensus 364 ---~-~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~f--p~~~~i~~~~li~~w~a 434 (961)
. + .+.+..+.+.+.+. .....-++..||.+.|..+..++.. .++..+...++...+-.
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 14445555444331 2334556788999888777665532 13344666666553321
Q ss_pred --hCccccccchHHHHHHHHHHHHHHhhccccccc
Q 002133 435 --LDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLN 467 (961)
Q Consensus 435 --~g~~~~~~~~~~~~~~~~~~~i~~L~~~~l~~~ 467 (961)
+. + . ........+.+++..|...|++..
T Consensus 320 ~~~~-~-~---~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 320 VCED-I-G---VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHh-c-C---CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 11 1 0 011234566677888888888863
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.18 E-value=3.2e-09 Score=113.27 Aligned_cols=186 Identities=18% Similarity=0.226 Sum_probs=117.2
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHH
Q 002133 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQAL 249 (961)
Q Consensus 170 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 249 (961)
.....++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..+++..+...++.+.... +.......+.+.+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~-~~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGR-DKAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCC-CHHHHHHHHHHHH
Confidence 3445689999999999999999999886532 11 22333 2334577889999999988765433 3334444444433
Q ss_pred ----HcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecchhhhh--------hcCCCCceEEccC
Q 002133 250 ----KKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLR--------INMSNPRIFSIST 315 (961)
Q Consensus 250 ----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~--------~~~~~~~~~~l~~ 315 (961)
..+++.+||+||++... .++.+.. +... .........|++|........ ........+.+++
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~-l~~~---~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRM-LSNF---QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHH-HhCc---ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCC
Confidence 34678999999998763 2333211 1100 000223345566665432210 1011134678999
Q ss_pred CCHHHHHHHHHHHhCCCC---CCCchhHHHHHHHHhhCCchHHHHHHHHHh
Q 002133 316 LADGEAKSLFEKIVGDSA---KESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (961)
Q Consensus 316 L~~~~s~~Lf~~~~~~~~---~~~~~~~~~~~i~~~c~glPLai~~~~~~L 363 (961)
++.+|..+++...+.... ...-..+..+.|++.++|.|..|..++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999987764211 112234678899999999999999999876
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=1.5e-11 Score=147.70 Aligned_cols=124 Identities=20% Similarity=0.312 Sum_probs=96.2
Q ss_pred CCCcEEecCCCC--CCCCCCc-c-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEE
Q 002133 512 KNPTAISIPFRD--ISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTL 587 (961)
Q Consensus 512 ~~l~~L~l~~~~--~~~lp~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L 587 (961)
.+++.|-+..|. +..++.. + .++.|++|+|++|.-.+.+|..+ +++-+||+|+++++.+..+|..+++|+.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 368999999886 6666653 3 89999999999998878999887 88999999999999999999999999999999
Q ss_pred EccCCC-CCCC-ccccCCCCCcEEEeccCcCCcc---chhhhcCCCcCEEecCC
Q 002133 588 SFDCCH-LEDV-ARVGDLAKLEILSFRNSHIEQL---PEQIGNLTRLKLLDLSN 636 (961)
Q Consensus 588 ~L~~~~-l~~~-~~~~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~ 636 (961)
++..+. +..+ .....|.+|++|.+.......- -..+.+|.+|+.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999986 3334 5555699999999877642211 22244455555555443
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=5.1e-11 Score=130.98 Aligned_cols=150 Identities=21% Similarity=0.175 Sum_probs=76.5
Q ss_pred CCcEEecCCCCCC-----CCCCcc-CCCceeEEEeccCCCCC--C---CChhhhhCCCceeEEEecCCCCC-CCCccccC
Q 002133 513 NPTAISIPFRDIS-----ELPDSL-QCTRLKLFLLFTEDSSL--Q---IPNQFFDGMTELLVLHLTGIHFP-SLPLSLGS 580 (961)
Q Consensus 513 ~l~~L~l~~~~~~-----~lp~~~-~~~~L~~L~l~~n~~~~--~---~~~~~~~~l~~L~~L~L~~~~~~-~lp~~~~~ 580 (961)
.++.+.+.++.+. .++... ..++++.|+++++.+.+ . .....+..+++|+.|++++|.+. ..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 4666666666652 223222 45556666666655431 0 00122345666666666666665 23333333
Q ss_pred CcC---CCEEEccCCCCCC--C----ccccCC-CCCcEEEeccCcCC-----ccchhhhcCCCcCEEecCCCCCCcc---
Q 002133 581 LIN---LRTLSFDCCHLED--V----ARVGDL-AKLEILSFRNSHIE-----QLPEQIGNLTRLKLLDLSNCSKLKV--- 642 (961)
Q Consensus 581 l~~---L~~L~L~~~~l~~--~----~~~~~l-~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~--- 642 (961)
+.+ |++|++++|++++ . ..+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|+ ++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHH
Confidence 333 6666666666553 1 234444 66666666666655 233344555566666666643 321
Q ss_pred --cChHHHhcCccCCEEEccCCCC
Q 002133 643 --IKPEVISRLSRLNELYMGNSFT 664 (961)
Q Consensus 643 --~~~~~l~~l~~L~~L~l~~~~~ 664 (961)
++. .+..+++|++|++++|.+
T Consensus 183 ~~l~~-~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 183 RALAE-GLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHH-HHHhCCCCCEEeccCCcc
Confidence 111 133445666666666543
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=4.3e-10 Score=117.40 Aligned_cols=201 Identities=19% Similarity=0.262 Sum_probs=105.2
Q ss_pred cCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHH---------
Q 002133 154 FPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI--------- 224 (961)
Q Consensus 154 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--------- 224 (961)
|+||++++++|.+++.....+.+.|+|+.|+|||+|++++.+...... + ..+|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 789999999999999877778999999999999999999999874321 1 33444443333221 11221
Q ss_pred -HHHhCCCcc----------CCCCHHHHHHHHHHHHHc-CCcEEEEEccccccc-ccc---cccCCCCCCCcccccCCCc
Q 002133 225 -ADQLGLEIV----------RPDSLVEKANQLRQALKK-KKRVLVILDDIWTQI-NLD---DIGIPFWDGEKQSVDNQGR 288 (961)
Q Consensus 225 -~~~l~~~~~----------~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~-~~~---~l~~~~~~~~~~~~~~~~g 288 (961)
.+.++.... ...........+.+.+.. +++.+||+||+.... ... .+...+.. ..........
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRS-LLDSLLSQQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHH-HHHH----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHH-HHhhccccCC
Confidence 111211000 011223344555555543 356999999998765 211 11000000 0000112344
Q ss_pred eEEEEEecchhhhhh-------cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHH
Q 002133 289 WTLLLASRDQHVLRI-------NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (961)
Q Consensus 289 s~IlvTtR~~~v~~~-------~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 358 (961)
..+|+++........ ..+....+.+++|+.+++++++...+.....-+.-.+..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 445555554433321 1233446999999999999999997644311112244568999999999998754
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.06 E-value=9.7e-09 Score=117.05 Aligned_cols=292 Identities=16% Similarity=0.153 Sum_probs=183.8
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-CCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~ 227 (961)
......+-|...++.+-. ..+.+.+.|..|+|.||||++.+.+.... .-..+.|.+++.. .++..+...++..
T Consensus 16 ~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~---~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 16 VRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAA---DGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred CCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcC---cccceeEeecCCccCCHHHHHHHHHHH
Confidence 335566677655554332 34789999999999999999999987332 2346899998764 4788888888887
Q ss_pred hCCCccCC-------------CCHHHHHHHHHHHHHc-CCcEEEEEcccccccc------cccccCCCCCCCcccccCCC
Q 002133 228 LGLEIVRP-------------DSLVEKANQLRQALKK-KKRVLVILDDIWTQIN------LDDIGIPFWDGEKQSVDNQG 287 (961)
Q Consensus 228 l~~~~~~~-------------~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~ 287 (961)
++.-.++. .+.......+...+.. .++..+||||..-..+ .+-+... ..+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~----------~P~ 159 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH----------APE 159 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh----------CCC
Confidence 76322221 1223344455554432 3678999999754321 1222222 345
Q ss_pred ceEEEEEecchhhhhhcCCC----CceEEcc----CCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 288 RWTLLLASRDQHVLRINMSN----PRIFSIS----TLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 288 gs~IlvTtR~~~v~~~~~~~----~~~~~l~----~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
+-..|||||+..-. .... ....++. .++.+|+.++|....+..-+. .-.+.+.+..+|.+-|+..+
T Consensus 160 ~l~lvv~SR~rP~l--~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~----~~~~~L~~~teGW~~al~L~ 233 (894)
T COG2909 160 NLTLVVTSRSRPQL--GLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDA----ADLKALYDRTEGWAAALQLI 233 (894)
T ss_pred CeEEEEEeccCCCC--cccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCCh----HHHHHHHhhcccHHHHHHHH
Confidence 78899999997542 1111 1122333 589999999998876433332 23578999999999999999
Q ss_pred HHHhc-cCChHHHHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHHHHHhcCCCCCCCCChhhHHHHHHHhCcc
Q 002133 360 ANALK-GQSTHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNL 438 (961)
Q Consensus 360 ~~~L~-~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~ 438 (961)
+=.++ +.+.+.-...+...... +. --...--++.||+++|..++-||+++. +. +.|+..-.+
T Consensus 234 aLa~~~~~~~~q~~~~LsG~~~~----l~-----dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~Ltg---- 296 (894)
T COG2909 234 ALALRNNTSAEQSLRGLSGAASH----LS-----DYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNALTG---- 296 (894)
T ss_pred HHHccCCCcHHHHhhhccchHHH----HH-----HHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHHhc----
Confidence 98887 33333222211100000 00 112234478999999999999999988 22 223222111
Q ss_pred ccccchHHHHHHHHHHHHHHhhccccccc--CCCCCeEeehHHHHHHHHHHhc
Q 002133 439 FTGIDTLEVARNRVYTLMDHLKGPCLLLN--GDTEDHVKMHQIIHALAVLIAS 489 (961)
Q Consensus 439 ~~~~~~~~~~~~~~~~~i~~L~~~~l~~~--~~~~~~~~mH~lv~~~~~~~~~ 489 (961)
++....++++|.+++++.. .+....|+.|.++.||.+.--.
T Consensus 297 ----------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 297 ----------EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred ----------CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 1223456888888888752 3567899999999999877544
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=1.2e-10 Score=128.07 Aligned_cols=155 Identities=19% Similarity=0.161 Sum_probs=77.4
Q ss_pred CCCceeEEEeccCCCCCC----CChhhhhCCCceeEEEecCCCCCC-------CCccccCCcCCCEEEccCCCCCC--Cc
Q 002133 532 QCTRLKLFLLFTEDSSLQ----IPNQFFDGMTELLVLHLTGIHFPS-------LPLSLGSLINLRTLSFDCCHLED--VA 598 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~-------lp~~~~~l~~L~~L~L~~~~l~~--~~ 598 (961)
.+++|+.|.+.++.+... ++. .+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+.. +.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 445566666666665321 121 23445556666666665542 22344556666666666666553 23
Q ss_pred cccCCCC---CcEEEeccCcCC-----ccchhhhcC-CCcCEEecCCCCCCc----ccChHHHhcCccCCEEEccCCCCc
Q 002133 599 RVGDLAK---LEILSFRNSHIE-----QLPEQIGNL-TRLKLLDLSNCSKLK----VIKPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 599 ~~~~l~~---L~~L~l~~~~l~-----~lp~~~~~l-~~L~~L~l~~~~~l~----~~~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
.+..+.+ |++|++++|.++ .+...+..+ ++|+.|++++|.... .+ ...+..+++|++|++++|.+.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL-AKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH-HHHHHhCCCcCEEECcCCCCc
Confidence 3333333 666666666555 122334455 666666666643221 11 112445556666666666443
Q ss_pred cccCCCccchHhhcCCCCCCEEEcc
Q 002133 666 KVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 666 ~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
.. ........+..+++|+.|+++
T Consensus 179 ~~--~~~~l~~~l~~~~~L~~L~L~ 201 (319)
T cd00116 179 DA--GIRALAEGLKANCNLEVLDLN 201 (319)
T ss_pred hH--HHHHHHHHHHhCCCCCEEecc
Confidence 20 001112234445566666665
No 32
>PF05729 NACHT: NACHT domain
Probab=99.04 E-value=1.5e-09 Score=106.53 Aligned_cols=145 Identities=23% Similarity=0.319 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCEEEEEEecCCCCHH---HHHHHHHHHhCCCccCCCCHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVDAEVTHTPDWK---EICGRIADQLGLEIVRPDSLVEKANQLR 246 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 246 (961)
+++.|+|.+|+||||+++.++........ +...+|+..+...... .+...+..+....... ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP------IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh------hHHHHH
Confidence 57899999999999999999998876543 3456677766544322 3333343333221111 111233
Q ss_pred HHHHcCCcEEEEEcccccccccc---------cccCCCCCCCcccccCCCceEEEEEecchhhh--hhcCCCCceEEccC
Q 002133 247 QALKKKKRVLVILDDIWTQINLD---------DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL--RINMSNPRIFSIST 315 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~--~~~~~~~~~~~l~~ 315 (961)
..+...+++++|+|++++...-. .+...+.. ....++++|+||+|..... .........+++.+
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~-----~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLP-----QALPPGVKLIITSRPRAFPDLRRRLKQAQILELEP 149 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhh-----hccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECC
Confidence 44445689999999998764311 11111111 0025689999999998773 33345556899999
Q ss_pred CCHHHHHHHHHHHh
Q 002133 316 LADGEAKSLFEKIV 329 (961)
Q Consensus 316 L~~~~s~~Lf~~~~ 329 (961)
|++++..+++.++.
T Consensus 150 ~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 150 FSEEDIKQYLRKYF 163 (166)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=2.5e-10 Score=109.84 Aligned_cols=128 Identities=26% Similarity=0.380 Sum_probs=36.8
Q ss_pred CCCceeEEEecCCCCCCCCcccc-CCcCCCEEEccCCCCCCCccccCCCCCcEEEeccCcCCccchhh-hcCCCcCEEec
Q 002133 557 GMTELLVLHLTGIHFPSLPLSLG-SLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQI-GNLTRLKLLDL 634 (961)
Q Consensus 557 ~l~~L~~L~L~~~~~~~lp~~~~-~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l 634 (961)
+...++.|+|.+|.++.+. .++ .+.+|+.|+|++|.|+.++.+..+++|++|++++|.|+.++..+ ..+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3344555555555555442 233 35566666666666666555666666666666666666665443 34666666666
Q ss_pred CCCCCCcccCh-HHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEc
Q 002133 635 SNCSKLKVIKP-EVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDM 689 (961)
Q Consensus 635 ~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 689 (961)
++ |.+..+.. ..++.+++|++|++.+|.+...+. ....-+..+++|+.||.
T Consensus 96 ~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~---YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN---YRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTT---HHHHHHHH-TT-SEETT
T ss_pred cC-CcCCChHHhHHHHcCCCcceeeccCCcccchhh---HHHHHHHHcChhheeCC
Confidence 65 34433321 225566666666666665443221 12223344555555554
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=3.1e-10 Score=109.14 Aligned_cols=134 Identities=24% Similarity=0.289 Sum_probs=36.2
Q ss_pred CCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCCC-ccc
Q 002133 522 RDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDV-ARV 600 (961)
Q Consensus 522 ~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~-~~~ 600 (961)
+.|...+...++.+++.|+|.+|.+. .+. .+-..+.+|+.|+|++|.++.++ .+..+++|++|++++|+|+.+ +.+
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 33444444445555566666666554 221 22123556666666666666554 355566666666666666654 223
Q ss_pred -cCCCCCcEEEeccCcCCccc--hhhhcCCCcCEEecCCCCCCcccC---hHHHhcCccCCEEEc
Q 002133 601 -GDLAKLEILSFRNSHIEQLP--EQIGNLTRLKLLDLSNCSKLKVIK---PEVISRLSRLNELYM 659 (961)
Q Consensus 601 -~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~~---~~~l~~l~~L~~L~l 659 (961)
..+++|++|++++|+|..+. ..+..+++|+.|++.+| .+...+ ...+..+|+|+.||-
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCC
Confidence 24566666666666555332 23455666666666663 333222 234566777777763
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=2.5e-11 Score=130.56 Aligned_cols=150 Identities=23% Similarity=0.362 Sum_probs=105.6
Q ss_pred CCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccC
Q 002133 513 NPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (961)
Q Consensus 513 ~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~ 591 (961)
.+..+.+..|.+..+|... ++..|..|+++.|+++ .+|..+ . .--|++|-+++|+++.+|..++.+.+|..|+.+.
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l-C-~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGL-C-DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhh-h-cCcceeEEEecCccccCCcccccchhHHHhhhhh
Confidence 3445566667777777665 7777777777777776 556554 2 2347777777777777777777777777777777
Q ss_pred CCCCC-CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 592 ~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
|.+.. |..++++..|+.|.+..|++..+|..+..| .|..||++. |++..+|.. |.+|+.|++|-|.+|.++..|
T Consensus 176 nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 176 NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC-NKISYLPVD-FRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc-Cceeecchh-hhhhhhheeeeeccCCCCCCh
Confidence 77666 677777777777777777777777777633 477777765 677777766 777777777777777666554
No 36
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.97 E-value=6.3e-08 Score=105.23 Aligned_cols=238 Identities=15% Similarity=0.105 Sum_probs=134.6
Q ss_pred ccccCCchHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 151 YVHFPSRNPVFQKMMESLR-----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
..+|+|+++.++.+..++. ......+.++|++|+|||+||+.+++..... + ..+..+....... +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHH
Confidence 4679999999999888876 2345668899999999999999999876532 2 1222221111222 22223
Q ss_pred HHhCCCc----cCCC-CHHHHHHHHHHHHHcCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecchhh
Q 002133 226 DQLGLEI----VRPD-SLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV 300 (961)
Q Consensus 226 ~~l~~~~----~~~~-~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v 300 (961)
..++... ++.. -.....+.+...+.. .+..+|+|+..+...+... ..+.+-|.+||+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~~-------------~~~~~li~~t~~~~~l 142 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMED-FRLDIVIGKGPSARSVRLD-------------LPPFTLVGATTRAGML 142 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhh-hheeeeeccCccccceeec-------------CCCeEEEEecCCcccc
Confidence 3332211 0000 001223334444443 4566777766555444321 1235556777776544
Q ss_pred hhhc-CCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHhc------cC---ChHH
Q 002133 301 LRIN-MSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALK------GQ---STHV 370 (961)
Q Consensus 301 ~~~~-~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~------~~---~~~~ 370 (961)
.... ......+.+++++.++..+++.+.+...... --.+....|++.|+|.|-.+..++..+. +. +.+.
T Consensus 143 ~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~-~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~ 221 (305)
T TIGR00635 143 TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE-IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDI 221 (305)
T ss_pred CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 3110 1123468999999999999999887632222 1235668899999999976655554321 00 1111
Q ss_pred HHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHHHH-HhcCCCCCCCCChhhH
Q 002133 371 WKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQ-LCGLLNDGSRLPIDDL 428 (961)
Q Consensus 371 w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~l 428 (961)
.+.+ ...+...|..++++.+..+. .++.++.+ .+..+.+
T Consensus 222 v~~~------------------l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~i 261 (305)
T TIGR00635 222 ALKA------------------LEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTL 261 (305)
T ss_pred HHHH------------------HHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHH
Confidence 1111 22245567788888777666 55666543 3444433
No 37
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.95 E-value=2.8e-08 Score=108.56 Aligned_cols=249 Identities=13% Similarity=0.076 Sum_probs=134.0
Q ss_pred CCccccCCchHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLR-----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
....+|+||++.++.+...+. ....+.+.|+|++|+||||+|+.+++..... + .++.... ......+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHH
Confidence 356789999999988877765 2335678899999999999999999987532 1 1222211 111222333
Q ss_pred HHHHhCCCcc-CCCCH----HHHHHHHHHHHHcCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecch
Q 002133 224 IADQLGLEIV-RPDSL----VEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ 298 (961)
Q Consensus 224 i~~~l~~~~~-~~~~~----~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~ 298 (961)
++..++.... -.++. ....+.+...+. ..+..+|+|+..+...+... -.+.+-|..||+..
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~~-------------l~~~~li~at~~~~ 161 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRLD-------------LPPFTLIGATTRAG 161 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceeec-------------CCCceEEeecCCcc
Confidence 3333321110 00000 111222333333 24455666655443322110 12245566777755
Q ss_pred hhhhh-cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHhccCChHHHHHHHHH
Q 002133 299 HVLRI-NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAINW 377 (961)
Q Consensus 299 ~v~~~-~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~~ 377 (961)
.+... .......+++++++.++..+++.+.+......- -.+....|++.|+|.|-.+..+...+. .|....
T Consensus 162 ~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~-~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~-- 233 (328)
T PRK00080 162 LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI-DEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK-- 233 (328)
T ss_pred cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc--
Confidence 44311 011235689999999999999998876432221 235678999999999965555544321 111100
Q ss_pred HHhcCCCcccccccccchhHhhhhcCcHhHHHHHH-HhcCCCCCCCCChhhH
Q 002133 378 LRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQ-LCGLLNDGSRLPIDDL 428 (961)
Q Consensus 378 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~l 428 (961)
................+...+..|++..+..+. ....|+.+ .+..+.+
T Consensus 234 --~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~ 282 (328)
T PRK00080 234 --GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTL 282 (328)
T ss_pred --CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHH
Confidence 000000000011133445667788887777775 66677664 3555554
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.3e-10 Score=125.18 Aligned_cols=168 Identities=23% Similarity=0.363 Sum_probs=149.1
Q ss_pred cCCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEc
Q 002133 511 RKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 589 (961)
.......+++.|++..+|... .|-.|..+.|..|.+. .+|..+ .++..|.+|||+.|.+..+|..++.|+ |++|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 345567788999999999877 7888999999999886 677766 789999999999999999999998887 999999
Q ss_pred cCCCCCC-CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 590 DCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 590 ~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
++|+++. |..++.+.+|..||.+.|.+..+|..++++.+|+.|.+.. |.+..+|+. +..| .|..|+++.|.+..+|
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~L-pLi~lDfScNkis~iP 227 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSL-PLIRLDFSCNKISYLP 227 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCC-ceeeeecccCceeecc
Confidence 9999998 7899999999999999999999999999999999999999 788889887 6655 5999999999998888
Q ss_pred CCCccchHhhcCCCCCCEEEccC
Q 002133 669 GQSNASVVELKQLSSLTILDMHI 691 (961)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~~ 691 (961)
..+.++++|++|-+..
T Consensus 228 -------v~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 228 -------VDFRKMRHLQVLQLEN 243 (722)
T ss_pred -------hhhhhhhhheeeeecc
Confidence 6888999999988874
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=3.2e-10 Score=112.49 Aligned_cols=131 Identities=23% Similarity=0.300 Sum_probs=107.5
Q ss_pred hcCCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEE
Q 002133 510 ARKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLS 588 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~ 588 (961)
-|+.+..+++++|.|..+..+. -.|.+|.|+++.|.+. .+.. +..+++|+.||||+|.++.+-.+-.++-|.++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEecccccee-eehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 3567888999999998888877 6789999999999886 3333 4778999999999998887766666788899999
Q ss_pred ccCCCCCCCccccCCCCCcEEEeccCcCCccch--hhhcCCCcCEEecCCCCCCcccC
Q 002133 589 FDCCHLEDVARVGDLAKLEILSFRNSHIEQLPE--QIGNLTRLKLLDLSNCSKLKVIK 644 (961)
Q Consensus 589 L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~~ 644 (961)
|++|.+..++.++++.+|.+||+++|+|..+.. .||+|+.|++|.|.+ |.+..++
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~-NPl~~~v 415 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG-NPLAGSV 415 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC-CCccccc
Confidence 999999888999999999999999999887743 588888888888888 4555554
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.4e-09 Score=113.97 Aligned_cols=181 Identities=18% Similarity=0.128 Sum_probs=128.2
Q ss_pred hcCCCcEEecCCCCCCCCCC--cc-CCCceeEEEeccCCCCCCC-ChhhhhCCCceeEEEecCCCCCCCCcc--ccCCcC
Q 002133 510 ARKNPTAISIPFRDISELPD--SL-QCTRLKLFLLFTEDSSLQI-PNQFFDGMTELLVLHLTGIHFPSLPLS--LGSLIN 583 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~--~~-~~~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~lp~~--~~~l~~ 583 (961)
..+++|.+++.++.+...+. .. .|++++.|+|+.|-+...- -..+...+++|+.|+|+.|.+....++ -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45688999999888876663 23 8999999999998765322 234567899999999999988643222 246889
Q ss_pred CCEEEccCCCCCC--C-ccccCCCCCcEEEeccC-cCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEc
Q 002133 584 LRTLSFDCCHLED--V-ARVGDLAKLEILSFRNS-HIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYM 659 (961)
Q Consensus 584 L~~L~L~~~~l~~--~-~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 659 (961)
|+.|.|++|.++. + .....+++|+.|+|.+| .+..-......+..|+.|||++|+.+..-.-...+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999999886 2 55667899999999998 333222334567789999999965544321223688999999999
Q ss_pred cCCCCccccCCCccchHhhcCCCCCCEEEcc
Q 002133 660 GNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
+.|.+..+..............++|+.|++.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecc
Confidence 9887766554433334444455556665554
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=8e-10 Score=109.66 Aligned_cols=124 Identities=20% Similarity=0.295 Sum_probs=94.7
Q ss_pred CCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCC
Q 002133 558 MTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNC 637 (961)
Q Consensus 558 l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 637 (961)
...|..||||+|.++.+-++..-++.++.|++++|++.....+..+++|+.|||++|.++++..+-.+|-|.++|.|++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~- 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ- 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-
Confidence 3567888999998888888888888899999999988888778888899999999988887776666788888888888
Q ss_pred CCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEc
Q 002133 638 SKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDM 689 (961)
Q Consensus 638 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 689 (961)
|.+..+. .+++|-+|..|++++|.+..+.. +..+++|+.|+.+.+
T Consensus 362 N~iE~LS--GL~KLYSLvnLDl~~N~Ie~lde-----V~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 362 NKIETLS--GLRKLYSLVNLDLSSNQIEELDE-----VNHIGNLPCLETLRL 406 (490)
T ss_pred hhHhhhh--hhHhhhhheeccccccchhhHHH-----hcccccccHHHHHhh
Confidence 6777763 27788888888888887765542 234455554444333
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.78 E-value=1.1e-06 Score=101.45 Aligned_cols=243 Identities=16% Similarity=0.132 Sum_probs=138.7
Q ss_pred cccCCchHHHHHHHHHhc----cCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhc---CCCC--EEEEEEecCCCCHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLR----DSN-VNMIGLYGMGGVGKTTLVKVVARQVVKE---DLFD--VVVDAEVTHTPDWKEIC 221 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~----~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~f~--~~~wv~~~~~~~~~~~~ 221 (961)
+.+.||++++++|...|. ... ..++-|+|++|+|||+.++.|.+..... .... .+++|++..-.+...+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 567899999999988886 222 3567899999999999999999876432 1122 35778887777888888
Q ss_pred HHHHHHhCCCccC-CCCHHHHHHHHHHHHHc--CCcEEEEEccccccccc-cc-ccCCCCCCCcccccCCCceEEEE--E
Q 002133 222 GRIADQLGLEIVR-PDSLVEKANQLRQALKK--KKRVLVILDDIWTQINL-DD-IGIPFWDGEKQSVDNQGRWTLLL--A 294 (961)
Q Consensus 222 ~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~~~-~~-l~~~~~~~~~~~~~~~~gs~Ilv--T 294 (961)
..|.+++....+. .....+....+...+.. +...+||||+|+....- ++ +..-+. ++...+++|+| +
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR------~~~~s~SKLiLIGI 908 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFD------WPTKINSKLVLIAI 908 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHH------HhhccCCeEEEEEe
Confidence 9998888433322 11334455556555522 22458999999764210 01 100000 01223445444 3
Q ss_pred ecchhhh-------hhcCCCCceEEccCCCHHHHHHHHHHHhCCC---CCCCchhHHHHHHHHhhCCchHHHHHHHHHhc
Q 002133 295 SRDQHVL-------RINMSNPRIFSISTLADGEAKSLFEKIVGDS---AKESDCRAIGVEIVGKCGGLPIAVSTIANALK 364 (961)
Q Consensus 295 tR~~~v~-------~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~---~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~ 364 (961)
|...... ...+. ...+...|++.++-.+++..++... ..+..++-+|+.++..-|-.-.|+.++-.+..
T Consensus 909 SNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 909 SNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 3221111 11111 2246779999999999999988532 12222333444444445556677766655543
Q ss_pred cC-----ChHHHHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHHHHHh
Q 002133 365 GQ-----STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLC 414 (961)
Q Consensus 365 ~~-----~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~ 414 (961)
.+ ..++-+++...+. ...+.-....||.+.|-.+..+
T Consensus 988 ikegskVT~eHVrkAleeiE-------------~srI~e~IktLPlHqKLVLlAL 1029 (1164)
T PTZ00112 988 NKRGQKIVPRDITEATNQLF-------------DSPLTNAINYLPWPFKMFLTCL 1029 (1164)
T ss_pred hcCCCccCHHHHHHHHHHHH-------------hhhHHHHHHcCCHHHHHHHHHH
Confidence 21 2233333333221 2234445678888877766543
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.76 E-value=5.6e-10 Score=116.29 Aligned_cols=83 Identities=24% Similarity=0.285 Sum_probs=44.3
Q ss_pred ceeEEEecCCCCC---CCCccccCCcCCCEEEccCCC-CCC--C-ccccCCCCCcEEEeccC-cCCcc--chhhhcCCCc
Q 002133 560 ELLVLHLTGIHFP---SLPLSLGSLINLRTLSFDCCH-LED--V-ARVGDLAKLEILSFRNS-HIEQL--PEQIGNLTRL 629 (961)
Q Consensus 560 ~L~~L~L~~~~~~---~lp~~~~~l~~L~~L~L~~~~-l~~--~-~~~~~l~~L~~L~l~~~-~l~~l--p~~~~~l~~L 629 (961)
.|+.|.+.|+.-. .+-....++++++.|++.+|. +++ . ..-..+++|++|++..| .++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5677777776432 333334566677777776664 444 1 22334566666666664 44421 2223455666
Q ss_pred CEEecCCCCCCcc
Q 002133 630 KLLDLSNCSKLKV 642 (961)
Q Consensus 630 ~~L~l~~~~~l~~ 642 (961)
++|+++.|..++.
T Consensus 219 ~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 219 KYLNLSWCPQISG 231 (483)
T ss_pred HHhhhccCchhhc
Confidence 6666666554443
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2e-09 Score=112.84 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=101.3
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCC---CCccccCCcCCCEEEccCCCCCCC---ccccCCCC
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPS---LPLSLGSLINLRTLSFDCCHLEDV---ARVGDLAK 605 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~---lp~~~~~l~~L~~L~L~~~~l~~~---~~~~~l~~ 605 (961)
++.+|+...|.++.....-.......|++++.|||++|-+.. +-.....|++|+.|+|+.|++..+ ..-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 788899999988776422212455889999999999998763 344567899999999999998774 22347899
Q ss_pred CcEEEeccCcCC--ccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 606 LEILSFRNSHIE--QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 606 L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
|+.|.|+.|.++ .+-.....+++|+.|++..|+.+..-.. ....+..|++|+|++|.+...+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCcccccc
Confidence 999999999988 4444466789999999999743322211 1456778999999988665443
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=1.2e-08 Score=115.44 Aligned_cols=167 Identities=28% Similarity=0.391 Sum_probs=115.5
Q ss_pred CCCcEEecCCCCCCCCCCccCCC--ceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEc
Q 002133 512 KNPTAISIPFRDISELPDSLQCT--RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (961)
Q Consensus 512 ~~l~~L~l~~~~~~~lp~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 589 (961)
..+..+.+.+|.+..++...... +|+.|++++|.+. .+|.. ...+++|+.|++++|.+..+|...+.+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 45777777777777777766443 7888888777775 44333 36777888888888887777776667777888888
Q ss_pred cCCCCCCC-ccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 590 DCCHLEDV-ARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 590 ~~~~l~~~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
++|+++.+ ..+..+.+|++|.+++|.+...+..+.++.++..|.+.+ +.+..++.. ++.+++|+.|++++|.+..++
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccceeccccccccccc
Confidence 88877773 444566667788887776666666677777777777666 455554333 677777888888777666655
Q ss_pred CCCccchHhhcCCCCCCEEEcc
Q 002133 669 GQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
.+..+.+|+.|+++
T Consensus 272 --------~~~~~~~l~~L~~s 285 (394)
T COG4886 272 --------SLGSLTNLRELDLS 285 (394)
T ss_pred --------cccccCccCEEecc
Confidence 15566666666665
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.68 E-value=2.4e-07 Score=104.49 Aligned_cols=179 Identities=12% Similarity=0.164 Sum_probs=106.8
Q ss_pred CCccccCCchHHHHH---HHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQK---MMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
...++++|++..+.. +..++.......+.++|++|+||||+|+.+++.... . |+.++....-..-+++++
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~--~-----~~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA--P-----FEALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----EEEEecccccHHHHHHHH
Confidence 346678899888666 777777777778899999999999999999987642 2 232222211111112222
Q ss_pred HHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEE--Eecchhhh
Q 002133 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLL--ASRDQHVL 301 (961)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~Ilv--TtR~~~v~ 301 (961)
.........+++.+|++|+++... +.+.+...+ . .|..++| ||.+....
T Consensus 82 -----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l-e---------~~~iilI~att~n~~~~ 134 (413)
T PRK13342 82 -----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV-E---------DGTITLIGATTENPSFE 134 (413)
T ss_pred -----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh-h---------cCcEEEEEeCCCChhhh
Confidence 122222223477899999998652 233332221 1 2333443 34432211
Q ss_pred --hhcCCCCceEEccCCCHHHHHHHHHHHhCCCC-CC-CchhHHHHHHHHhhCCchHHHHHHHH
Q 002133 302 --RINMSNPRIFSISTLADGEAKSLFEKIVGDSA-KE-SDCRAIGVEIVGKCGGLPIAVSTIAN 361 (961)
Q Consensus 302 --~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~-~~-~~~~~~~~~i~~~c~glPLai~~~~~ 361 (961)
.........+.+.+++.++...++.+.+.... .. .-..+..+.|++.|+|.+..+..+..
T Consensus 135 l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 135 VNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred ccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11122336899999999999999998764211 11 22245677899999999976644433
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=2.9e-08 Score=112.41 Aligned_cols=103 Identities=32% Similarity=0.507 Sum_probs=54.5
Q ss_pred CCceeEEEecCCCCCCCCccccCCc-CCCEEEccCCCCCCC-ccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecC
Q 002133 558 MTELLVLHLTGIHFPSLPLSLGSLI-NLRTLSFDCCHLEDV-ARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLS 635 (961)
Q Consensus 558 l~~L~~L~L~~~~~~~lp~~~~~l~-~L~~L~L~~~~l~~~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 635 (961)
++.+..|++.+|.+..+|.....+. +|+.|++++|.+... ..++.+++|+.|++++|++..+|...+.+++|+.|+++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 3455555555555555555555553 555555555555552 45555555555555555555555544455555555555
Q ss_pred CCCCCcccChHHHhcCccCCEEEccCC
Q 002133 636 NCSKLKVIKPEVISRLSRLNELYMGNS 662 (961)
Q Consensus 636 ~~~~l~~~~~~~l~~l~~L~~L~l~~~ 662 (961)
+ +.+..+|+. +..+..|++|.+++|
T Consensus 195 ~-N~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 195 G-NKISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred C-CccccCchh-hhhhhhhhhhhhcCC
Confidence 5 455555443 234444555555555
No 48
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.5e-05 Score=84.22 Aligned_cols=283 Identities=18% Similarity=0.213 Sum_probs=164.0
Q ss_pred cCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 002133 154 FPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLG 229 (961)
Q Consensus 154 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 229 (961)
+.+|+.+++++...|. +....-+.|+|..|+|||+.++.+.+.......=...++|++....+..+++.+|+++++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 8899999999988775 334445899999999999999999999875422222789999999999999999999996
Q ss_pred CCccCCCCHHHHHHHHHHHHHc-CCcEEEEEcccccccccc--cccCCCCCCCcccccCCCceEEE--EEecchhhh---
Q 002133 230 LEIVRPDSLVEKANQLRQALKK-KKRVLVILDDIWTQINLD--DIGIPFWDGEKQSVDNQGRWTLL--LASRDQHVL--- 301 (961)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~--~l~~~~~~~~~~~~~~~~gs~Il--vTtR~~~v~--- 301 (961)
.......+..+..+.+.+.+.. ++.++||||+++....-. -+..-+. ......++|+ ..+-+....
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r------~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLR------APGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHh------hccccceeEEEEEEeccHHHHHHh
Confidence 3333334667778888888864 678999999997653321 1100000 0122244433 333332222
Q ss_pred ----hhcCCCCceEEccCCCHHHHHHHHHHHhC----CCCCCCchhHHHHHHHHhhC-CchHHHHHHHHHhc--cC----
Q 002133 302 ----RINMSNPRIFSISTLADGEAKSLFEKIVG----DSAKESDCRAIGVEIVGKCG-GLPIAVSTIANALK--GQ---- 366 (961)
Q Consensus 302 ----~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~-glPLai~~~~~~L~--~~---- 366 (961)
....+. ..+...|.+.+|-...+..++. ....+++.-+++..++..-+ -.-.||..+-.+.. .+
T Consensus 173 d~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~ 251 (366)
T COG1474 173 DPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSR 251 (366)
T ss_pred hhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCC
Confidence 111222 3478999999999999988773 22333333334444444444 44555554433322 11
Q ss_pred --ChHHHHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHHHHHhcCCCCCCCCChhhHHHH--HHHhCcccccc
Q 002133 367 --STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRY--VFALDNLFTGI 442 (961)
Q Consensus 367 --~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~--w~a~g~~~~~~ 442 (961)
+.+.-+.+..... .....-....||.+.|..+......- ..+....+-.. ++.+. .
T Consensus 252 ~v~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~-----~ 311 (366)
T COG1474 252 KVSEDHVREAQEEIE-------------RDVLEEVLKTLPLHQKIVLLAIVELT--VEISTGELYDVYESLCER-----L 311 (366)
T ss_pred CcCHHHHHHHHHHhh-------------HHHHHHHHHcCCHhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhh-----h
Confidence 1122222211110 34455557888888777654443331 22333333221 11211 1
Q ss_pred chHHHHHHHHHHHHHHhhcccccc
Q 002133 443 DTLEVARNRVYTLMDHLKGPCLLL 466 (961)
Q Consensus 443 ~~~~~~~~~~~~~i~~L~~~~l~~ 466 (961)
.. ....+.+++.+|...+++.
T Consensus 312 ~~---~~~~~~~ii~~L~~lgiv~ 332 (366)
T COG1474 312 RT---SQRRFSDIISELEGLGIVS 332 (366)
T ss_pred Cc---hHHHHHHHHHHHHhcCeEE
Confidence 11 3445666777776666664
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.57 E-value=6.8e-07 Score=93.91 Aligned_cols=173 Identities=16% Similarity=0.236 Sum_probs=102.8
Q ss_pred CCccccCCchHHH---HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVF---QKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 149 ~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
...++++|.+..+ .-|-.++....+.-..+||++|+||||||+.++..... .| ..++...+-.+=+++++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~--~f-----~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA--AF-----EALSAVTSGVKDLREII 93 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC--ce-----EEeccccccHHHHHHHH
Confidence 3455667766554 23344455677888889999999999999999987653 23 33443332222222222
Q ss_pred HHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEE--Eecchhhh
Q 002133 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLL--ASRDQHVL 301 (961)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~Ilv--TtR~~~v~ 301 (961)
++-++....+++.+|.+|.|..- .+-+.+ .|. -..|.-|+| ||-+..-.
T Consensus 94 -----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l-Lp~---------vE~G~iilIGATTENPsF~ 146 (436)
T COG2256 94 -----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDAL-LPH---------VENGTIILIGATTENPSFE 146 (436)
T ss_pred -----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhh-hhh---------hcCCeEEEEeccCCCCCee
Confidence 23333333478999999999754 233333 333 234666665 44443221
Q ss_pred --hhcCCCCceEEccCCCHHHHHHHHHHHhCCC-CCC----C-chhHHHHHHHHhhCCchHH
Q 002133 302 --RINMSNPRIFSISTLADGEAKSLFEKIVGDS-AKE----S-DCRAIGVEIVGKCGGLPIA 355 (961)
Q Consensus 302 --~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~-~~~----~-~~~~~~~~i~~~c~glPLa 355 (961)
........++.+++|+.++-.+++.+.+... ..- . --++.-.-++..++|---+
T Consensus 147 ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 147 LNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred ecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 1113445689999999999999999854311 111 1 1234556788888887543
No 50
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.7e-07 Score=110.95 Aligned_cols=101 Identities=19% Similarity=0.355 Sum_probs=52.4
Q ss_pred eeEEEecCCCCC-CCCccccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEeccCcCC-ccchhhhcCCCcCEEecCC
Q 002133 561 LLVLHLTGIHFP-SLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSHIE-QLPEQIGNLTRLKLLDLSN 636 (961)
Q Consensus 561 L~~L~L~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~ 636 (961)
++.|+|++|.+. .+|..++.+++|++|+|++|.+++ |..++.+++|+.|+|++|.++ .+|..+++|++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455555555554 445555555555555555555544 344555555555555555555 4555555555555555555
Q ss_pred CCCCcccChHHHhc-CccCCEEEccCC
Q 002133 637 CSKLKVIKPEVISR-LSRLNELYMGNS 662 (961)
Q Consensus 637 ~~~l~~~~~~~l~~-l~~L~~L~l~~~ 662 (961)
|+....+|.. ++. +.++..+++.+|
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCC
Confidence 4433344443 332 234455555544
No 51
>PRK06893 DNA replication initiation factor; Validated
Probab=98.54 E-value=1.8e-06 Score=88.81 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=90.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
..+.+.++|+.|+|||+||+++++....+ ...+.|+++... .... ..+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~---~~~~---------------------~~~~~~~~- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKS---QYFS---------------------PAVLENLE- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHh---hhhh---------------------HHHHhhcc-
Confidence 34568999999999999999999987644 234567765321 0000 11222222
Q ss_pred CCcEEEEEcccccc---ccccc-ccCCCCCCCcccccCCCceEEEEEecch----------hhhhhcCCCCceEEccCCC
Q 002133 252 KKRVLVILDDIWTQ---INLDD-IGIPFWDGEKQSVDNQGRWTLLLASRDQ----------HVLRINMSNPRIFSISTLA 317 (961)
Q Consensus 252 ~kr~LlVlDdv~~~---~~~~~-l~~~~~~~~~~~~~~~~gs~IlvTtR~~----------~v~~~~~~~~~~~~l~~L~ 317 (961)
+.-+||+||+|.. .+|+. +...+.. . ...|..+||+|.+. .+.. .+.....+++++++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~-----~-~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd 162 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNR-----I-KEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLT 162 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHH-----H-HHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCC
Confidence 2358999999874 33432 1111111 0 12355565544443 2222 23445689999999
Q ss_pred HHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 318 DGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 318 ~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
+++.++++++.+...... --+++..-|++.+.|-.-++..+
T Consensus 163 ~e~~~~iL~~~a~~~~l~-l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 163 DEQKIIVLQRNAYQRGIE-LSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhccCCHHHHHHH
Confidence 999999999988633221 12356677888888776555433
No 52
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.53 E-value=1.8e-07 Score=98.99 Aligned_cols=289 Identities=20% Similarity=0.218 Sum_probs=180.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
..+-+.++|.|||||||++-++.. ... .+-+.+.++....-.+...+.-.....++...... +.....+...+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~-~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AAS-EYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhh-hcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh-
Confidence 457799999999999999999998 432 33356667777777777777777777787765442 222334444444
Q ss_pred CCcEEEEEcccccccc-cccccCCCCCCCcccccCCCceEEEEEecchhhhhhcCCCCceEEccCCCHH-HHHHHHHHHh
Q 002133 252 KKRVLVILDDIWTQIN-LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINMSNPRIFSISTLADG-EAKSLFEKIV 329 (961)
Q Consensus 252 ~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~~l~~L~~~-~s~~Lf~~~~ 329 (961)
.+|.++|+||..+... -..+...+-. +.+.-.|+.|+|.... +.....+.+.+|+.. ++.++|...+
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~-------~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLG-------ACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHc-------cchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHH
Confidence 3789999999876521 1111111112 4555678999987764 344567788888765 7999998776
Q ss_pred CCCC----CCCchhHHHHHHHHhhCCchHHHHHHHHHhccCChHHHHHHHHH----HHhcCCCccccc--ccccchhHhh
Q 002133 330 GDSA----KESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAINW----LRKSNPRKIKGM--DADLSSIELS 399 (961)
Q Consensus 330 ~~~~----~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~~----l~~~~~~~~~~~--~~~~~~l~~s 399 (961)
.... ....-...+.+|.++..|.|++|...++..+.....+-..-++. +... ..+-.. ......+.+|
T Consensus 156 ~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~--~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 156 VLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG--ARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc--cccchhHHHhccchhhhh
Confidence 4211 12223456789999999999999999999987755443333221 1111 111111 1227899999
Q ss_pred hhcCcHhHHHHHHHhcCCCCCCCCChhhHHHHHHHhCccccccchHHHHHHHHHHHHHHhhcccccccC--CCCCeEeeh
Q 002133 400 YKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLNG--DTEDHVKMH 477 (961)
Q Consensus 400 y~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~i~~L~~~~l~~~~--~~~~~~~mH 477 (961)
|.-|....+-.|.-++.|...|... ...|.+-| -. ...........+..+++.+++... .....|+.-
T Consensus 234 ~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g-~~-----~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~ 303 (414)
T COG3903 234 YALLTGWERALFGRLAVFVGGFDLG----LALAVAAG-AD-----VDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLL 303 (414)
T ss_pred hHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcC-Cc-----cccchHHHHHHHHHHhhccchhhhhhhhHHHHHHH
Confidence 9999999999999999998866544 34466655 11 000111122223446666766432 223345555
Q ss_pred HHHHHHHHHHhc
Q 002133 478 QIIHALAVLIAS 489 (961)
Q Consensus 478 ~lv~~~~~~~~~ 489 (961)
+-++.|+..+-.
T Consensus 304 eT~r~YalaeL~ 315 (414)
T COG3903 304 ETGRRYALAELH 315 (414)
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
No 53
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=2.2e-07 Score=86.13 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=80.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcC
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (961)
.+++.|.|+.|+||||++++++.+.. ....+++++..+.........+ ..+.+.+... +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~-~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIK-P 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhc-c
Confidence 46899999999999999999998765 2345678877664321110000 1122222222 2
Q ss_pred CcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecchhhhhh-----cCCCCceEEccCCCHHH
Q 002133 253 KRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRI-----NMSNPRIFSISTLADGE 320 (961)
Q Consensus 253 kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~~-----~~~~~~~~~l~~L~~~~ 320 (961)
++.+|+||++....+|......+.+ ..+..+|++|+.+...... ..+....+++.||+-.|
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d-------~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVD-------NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHH-------hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 5688999999999888876566555 4567899999998776521 12333468999998776
No 54
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=3.4e-06 Score=91.61 Aligned_cols=177 Identities=12% Similarity=0.180 Sum_probs=112.9
Q ss_pred ccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHh----hcCCCCEEEEEEe-cCCCCHHHHHHHH
Q 002133 151 YVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVV----KEDLFDVVVDAEV-THTPDWKEICGRI 224 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~f~~~~wv~~-~~~~~~~~~~~~i 224 (961)
..+++|.+..++.+.+++...+. +...++|+.|+||||+|+.+++..- ...|+|...|... +......+ .+++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 45678999999999999976655 4668999999999999999998752 2356776666542 22233333 2333
Q ss_pred HHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccc--cccccccccCCCCCCCcccccCCCceEEEEEecchhhh-
Q 002133 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIW--TQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL- 301 (961)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~- 301 (961)
.+.+..... .+++-++|+|+++ +...++.+...+.+ ..+++.+|++|.+....
T Consensus 82 ~~~~~~~p~-----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEe-------pp~~t~~il~~~~~~~ll 137 (313)
T PRK05564 82 IEEVNKKPY-----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEE-------PPKGVFIILLCENLEQIL 137 (313)
T ss_pred HHHHhcCcc-----------------cCCceEEEEechhhcCHHHHHHHHHHhcC-------CCCCeEEEEEeCChHhCc
Confidence 333322111 1244556666654 44556666555544 45678888888655432
Q ss_pred hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHH
Q 002133 302 RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVS 357 (961)
Q Consensus 302 ~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 357 (961)
..-......+++.++++++....+.+..... ..+.++.++..++|.|.-+.
T Consensus 138 ~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 138 DTIKSRCQIYKLNRLSKEEIEKFISYKYNDI-----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHhhceeeeCCCcCHHHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHH
Confidence 1112234689999999999988776654211 12336678999999987554
No 55
>PTZ00202 tuzin; Provisional
Probab=98.46 E-value=4.3e-06 Score=89.57 Aligned_cols=163 Identities=13% Similarity=0.167 Sum_probs=101.1
Q ss_pred cCCccccCCchHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHH
Q 002133 148 VRGYVHFPSRNPVFQKMMESLRD---SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (961)
+.+...|+||+.++.++...|.+ ...+++.|+|++|+|||||++.+..... + ..++++.. +..++++.+
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHHH
Confidence 35567899999999999988863 2345889999999999999999996543 1 13333333 679999999
Q ss_pred HHHhCCCccCCCCHHHHHHHHHHHHH----c-CCcEEEEEccccccccccccc---CCCCCCCcccccCCCceEEEEEec
Q 002133 225 ADQLGLEIVRPDSLVEKANQLRQALK----K-KKRVLVILDDIWTQINLDDIG---IPFWDGEKQSVDNQGRWTLLLASR 296 (961)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~----~-~kr~LlVlDdv~~~~~~~~l~---~~~~~~~~~~~~~~~gs~IlvTtR 296 (961)
+.++|.+... ...+....+.+.+. . +++.+||+-= .+...+.... ..+.. ...-|.|++---
T Consensus 330 L~ALGV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~-------drr~ch~v~evp 399 (550)
T PTZ00202 330 VKALGVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALAC-------DRRLCHVVIEVP 399 (550)
T ss_pred HHHcCCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHc-------cchhheeeeeeh
Confidence 9999984322 33455555555553 2 5677777741 1111111100 11111 234456665543
Q ss_pred chhhh--hhcCCCCceEEccCCCHHHHHHHHHHH
Q 002133 297 DQHVL--RINMSNPRIFSISTLADGEAKSLFEKI 328 (961)
Q Consensus 297 ~~~v~--~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 328 (961)
-+... ....+.-.-|.+.+++.++|.+.....
T Consensus 400 leslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 400 LESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred HhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 33321 112333446889999999998776654
No 56
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=5.5e-07 Score=84.22 Aligned_cols=117 Identities=24% Similarity=0.303 Sum_probs=82.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcC---CCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKED---LFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQA 248 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 248 (961)
+.+++.|+|.+|+|||++++++++...... .-..++|+.+....+...+...++.+++.......+..+..+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 346789999999999999999999875310 12456799998888999999999999998877744777888889999
Q ss_pred HHcCCcEEEEEcccccc-c--ccccccCCCCCCCcccccCCCceEEEEEecc
Q 002133 249 LKKKKRVLVILDDIWTQ-I--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (961)
Q Consensus 249 l~~~kr~LlVlDdv~~~-~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~ 297 (961)
+.+.+..+||+||++.. . .++.+. .+.+..+.++|++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~---------~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLR---------SLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHH---------HHTCSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHH---------HHHhCCCCeEEEEECh
Confidence 98766679999999875 2 111121 1114567778877765
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.44 E-value=1.1e-08 Score=106.88 Aligned_cols=301 Identities=17% Similarity=0.140 Sum_probs=181.8
Q ss_pred cCCCEEEccCCCCCC---C-ccccCCCCCcEEEeccC-cCC--ccchhhhcCCCcCEEecCCCCCCcccChH-HHhcCcc
Q 002133 582 INLRTLSFDCCHLED---V-ARVGDLAKLEILSFRNS-HIE--QLPEQIGNLTRLKLLDLSNCSKLKVIKPE-VISRLSR 653 (961)
Q Consensus 582 ~~L~~L~L~~~~l~~---~-~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~l~~l~~ 653 (961)
--|+.|.+.||.-.. . ....+++++++|.+.+| .++ .+-..-..+.+|++|++..|..++...-. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357888999986333 2 44567899999999998 555 22333457899999999999888876544 3347899
Q ss_pred CCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecC
Q 002133 654 LNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKL 733 (961)
Q Consensus 654 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~ 733 (961)
|++|+++.|.. +.+.. .-.-..++..++.+.... +..+..--|... ...+...+.++.
T Consensus 218 L~~lNlSwc~q--i~~~g--v~~~~rG~~~l~~~~~kG------C~e~~le~l~~~------------~~~~~~i~~lnl 275 (483)
T KOG4341|consen 218 LKYLNLSWCPQ--ISGNG--VQALQRGCKELEKLSLKG------CLELELEALLKA------------AAYCLEILKLNL 275 (483)
T ss_pred HHHhhhccCch--hhcCc--chHHhccchhhhhhhhcc------cccccHHHHHHH------------hccChHhhccch
Confidence 99999998742 22110 001122233333332221 111000000000 000111122221
Q ss_pred CCcccch---H-HHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccc
Q 002133 734 DNSIYLG---Y-GIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLC 809 (961)
Q Consensus 734 ~~~~~~~---~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~ 809 (961)
..+..+. - .+...+..|+.|+.++|...++.+-+- -..+.++|+.|.++.|..+....-.....+.+.|+.+++.
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a-Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA-LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH-HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 1111111 1 123345788999999998876654332 2356799999999999876665443355678899999999
Q ss_pred cccccccccccccccccCcCcCCCccEEEeecCCCCcccCC---hHHHhhcccccEEeEeccccccccccccccCCccCC
Q 002133 810 NLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFP---SFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHEN 886 (961)
Q Consensus 810 ~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~---~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~ 886 (961)
.|....+-.-.. ....+|.|+.|.+++|..+++... .....++..|+.+.+++||.+.+-..
T Consensus 355 ~~~~~~d~tL~s-----ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L---------- 419 (483)
T KOG4341|consen 355 ECGLITDGTLAS-----LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL---------- 419 (483)
T ss_pred ccceehhhhHhh-----hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH----------
Confidence 886555442112 125789999999999987766511 01124577899999999998766532
Q ss_pred CcccccccccccceeccccccccccCCCCCCCCCCC
Q 002133 887 GSMRVVNFNHLHSLALRRLPQLTSSGFYLETPTTGG 922 (961)
Q Consensus 887 ~~~~l~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~ 922 (961)
.-+..+++|+.+++.+|.....-+........|.
T Consensus 420 --e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 420 --EHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred --HHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 2236778999999999988877554433333333
No 58
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=6.1e-06 Score=91.28 Aligned_cols=193 Identities=14% Similarity=0.194 Sum_probs=106.9
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
....+++|.+..++.+.+.+...++ +.+.++|+.|+||||+|+.+++.......... .....-...+++...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEKG 85 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhcC
Confidence 4467789999999999988876654 45789999999999999999987642111100 000000001111110
Q ss_pred hCCCcc----CCCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecc
Q 002133 228 LGLEIV----RPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (961)
Q Consensus 228 l~~~~~----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~ 297 (961)
...+.. ......+.+..+.+.+. .+++-++|+|++.... .++.+...+.+ ..+..++|++|.+
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-------~~~~~~fIl~t~~ 158 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPQHIKFILATTD 158 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-------CCCCeEEEEEcCC
Confidence 000000 00001111222322221 1345689999997763 34444333322 2345566666644
Q ss_pred h-hhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 298 Q-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 298 ~-~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
. .+...-......+++.+++.++..+.+...+....... -++.+..|++.++|.|-.+
T Consensus 159 ~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 159 VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT-DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 3 33221122236899999999999988887664322111 1245678999999988544
No 59
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=1.7e-07 Score=73.87 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=32.3
Q ss_pred CceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCC
Q 002133 534 TRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (961)
Q Consensus 534 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 593 (961)
|+|++|++++|.+. .+|...|.++++|++|++++|.+..+ |..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554 45555555555666666665555555 2345555555555555554
No 60
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3e-06 Score=99.53 Aligned_cols=185 Identities=13% Similarity=0.191 Sum_probs=109.9
Q ss_pred CCccccCCchHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CCEEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNM-IGLYGMGGVGKTTLVKVVARQVVKEDL-------------------FDVVVD 208 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~w 208 (961)
..+.+++|.+..+..|.+++..+++.- +.++|+.|+||||+|+.+++....... |.-+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 446789999999999999888766654 589999999999999999987643211 111122
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc--cccccccCCCCCCCcccccCC
Q 002133 209 AEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQ 286 (961)
Q Consensus 209 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~ 286 (961)
++......+.. ++++...+ ...-..+++-++|||++... ...+.+...+-. -.
T Consensus 93 idAas~~kVDd-IReLie~v-----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-------PP 147 (944)
T PRK14949 93 VDAASRTKVDD-TRELLDNV-----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-------PP 147 (944)
T ss_pred eccccccCHHH-HHHHHHHH-----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------cC
Confidence 22211111111 12222111 11111246779999999765 334443322222 22
Q ss_pred CceEEEEEe-cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 287 GRWTLLLAS-RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 287 ~gs~IlvTt-R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
...++|++| ....+..........|++++++.++..+.+.+.+...... --.+....|++.++|.|--+..+
T Consensus 148 ~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~-~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 148 EHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP-FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 345555544 4444432212233689999999999999998877532221 12345678999999988544433
No 61
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=6.5e-07 Score=106.13 Aligned_cols=108 Identities=21% Similarity=0.352 Sum_probs=84.9
Q ss_pred ceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCC-CCCccccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEe
Q 002133 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSF 611 (961)
Q Consensus 535 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l 611 (961)
.++.|+|++|.+.+.+|..+ +.+++|+.|+|++|.+. .+|..++.+++|++|+|++|++++ |..++++++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 47788888888888888765 77888888888888887 678888888888888888888876 577888888888888
Q ss_pred ccCcCC-ccchhhhcC-CCcCEEecCCCCCCccc
Q 002133 612 RNSHIE-QLPEQIGNL-TRLKLLDLSNCSKLKVI 643 (961)
Q Consensus 612 ~~~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~~ 643 (961)
++|.++ .+|..++.+ .++..+++.+|..+...
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 888877 778777653 46777888876554433
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.41 E-value=4.6e-06 Score=92.30 Aligned_cols=200 Identities=15% Similarity=0.121 Sum_probs=109.4
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC-EEEEEEecCCCCH-HHHHH---H
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD-VVVDAEVTHTPDW-KEICG---R 223 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~-~~~~~---~ 223 (961)
.....++|++..++.+..++.....+.+.++|+.|+||||+|+.+++..... .+. ..+.+++++..+. ...+. .
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcc
Confidence 3456788999999999998887776778899999999999999999876432 222 2344444331100 00000 0
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHHHc-----CCcEEEEEcccccccc--cccccCCCCCCCcccccCCCceEEEEEec
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQALKK-----KKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTLLLASR 296 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-----~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~gs~IlvTtR 296 (961)
....++..........+....+.+.... +.+-+||+||+..... ...+...+.. ....+++|+||.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~-------~~~~~~~Il~~~ 163 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ-------YSRTCRFIIATR 163 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-------ccCCCeEEEEeC
Confidence 0000000000000112222332222211 2345899999965421 1222111111 223466777775
Q ss_pred chh-hhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHH
Q 002133 297 DQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVS 357 (961)
Q Consensus 297 ~~~-v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 357 (961)
... +..........+.+.+++.++....+.+.+...... --.+..+.+++.++|.+-.+.
T Consensus 164 ~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 164 QPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred ChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 432 211112233578999999999998888876432222 123466788899988765543
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=5e-06 Score=95.80 Aligned_cols=182 Identities=16% Similarity=0.209 Sum_probs=112.3
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CCEEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDL-------------------FDVVVD 208 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~w 208 (961)
..+.+++|.+..++.|.+++...++ +.+.++|..|+||||+|+.+.+...-+.. |..+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 4577899999999999999886664 45679999999999999999887642211 111233
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCccc
Q 002133 209 AEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQS 282 (961)
Q Consensus 209 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~ 282 (961)
++.+....+.+ +..+.+... .++.-++|||++.... .++.+...+-+
T Consensus 93 IDAas~rgVDd----------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE----- 145 (830)
T PRK07003 93 MDAASNRGVDE----------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE----- 145 (830)
T ss_pred ecccccccHHH----------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----
Confidence 32222211111 112222211 2345678899998763 35555333322
Q ss_pred ccCCCceEEEEEecchhhh-hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch-HHHHHHH
Q 002133 283 VDNQGRWTLLLASRDQHVL-RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAVSTIA 360 (961)
Q Consensus 283 ~~~~~gs~IlvTtR~~~v~-~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 360 (961)
-....++|+||.+..-. .........+.+++++.++..+.+.+.+..+.... -.+....|++.++|.. -|+..+-
T Consensus 146 --PP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 146 --PPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred --cCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23467777777665432 11122235799999999999999998875433222 2345678999998865 4555433
No 64
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.37 E-value=6.6e-07 Score=92.05 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=65.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC--CCHHHHHHHHHHHhCCCccCCCCH------HHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT--PDWKEICGRIADQLGLEIVRPDSL------VEKAN 243 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~ 243 (961)
.-..++|+|++|+|||||++++++..... +|+.++|+.+.+. .++.++++++...+-....+.+.. .....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999988764 8999999998776 789999999933321111111111 12223
Q ss_pred HHHHHHHcCCcEEEEEcccccc
Q 002133 244 QLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 244 ~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
........+++.++++|++..-
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 3333334578999999999654
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.37 E-value=1.2e-05 Score=79.23 Aligned_cols=186 Identities=13% Similarity=0.131 Sum_probs=92.5
Q ss_pred cCCccccCCchHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHH
Q 002133 148 VRGYVHFPSRNPVFQKMMESLR-----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (961)
+...++|+|.++.++.+.-.+. ++...-+.+||++|+||||||..+++..... | .+++...-....++ .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL-A 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH-H
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH-H
Confidence 3457889999998887654443 3456778999999999999999999987743 3 23332211111121 2
Q ss_pred HHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc---------ccccc-----cCCCCCCCcccccCCCc
Q 002133 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI---------NLDDI-----GIPFWDGEKQSVDNQGR 288 (961)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---------~~~~l-----~~~~~~~~~~~~~~~~g 288 (961)
.++..+ +++-+|.+|++.... ..++. ...-+....-.+.-.+-
T Consensus 94 ~il~~l-----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 94 AILTNL-----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp HHHHT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred HHHHhc-----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 222221 123455666664320 00000 00000000000011233
Q ss_pred eEEEEEecchhhhhhcCCC-CceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHh
Q 002133 289 WTLLLASRDQHVLRINMSN-PRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (961)
Q Consensus 289 s~IlvTtR~~~v~~~~~~~-~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 363 (961)
+-|=.|||...+....... ....+++..+.+|-.+...+.+..-... -.++.+.+|+++|.|-|--+.-+-+..
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~-i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE-IDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E-E-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4566788886664321222 2345899999999999988766432221 124578899999999997554444433
No 66
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.37 E-value=3.3e-06 Score=87.45 Aligned_cols=169 Identities=13% Similarity=0.145 Sum_probs=100.8
Q ss_pred chHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCC
Q 002133 157 RNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD 236 (961)
Q Consensus 157 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 236 (961)
.+..++.+.+++.......+.|+|+.|+|||++|+.+++..... ....++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH------------
Confidence 45577777777655566789999999999999999999886532 33456666543221 00
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEccccccc---ccc-cccCCCCCCCcccccCCCceEEEEEecchhhh--------hhc
Q 002133 237 SLVEKANQLRQALKKKKRVLVILDDIWTQI---NLD-DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL--------RIN 304 (961)
Q Consensus 237 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~-~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~--------~~~ 304 (961)
..+.+.+. +.-+|||||++... .|. .+...+.. . ...+.++|+||+..... ...
T Consensus 82 ------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~-----~-~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNR-----V-REAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHH-----H-HHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 01111222 23489999998653 222 12111100 0 12234788888753211 111
Q ss_pred CCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHH
Q 002133 305 MSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (961)
Q Consensus 305 ~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 360 (961)
......+++.++++++...++...+...... --.+..+.|++.+.|.|..+.-+.
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQ-LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhccCCHHHHHHHH
Confidence 2224579999999999999988765321111 123455778888888887765554
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=5.5e-06 Score=90.16 Aligned_cols=185 Identities=16% Similarity=0.128 Sum_probs=106.6
Q ss_pred cCCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC-EEEEEEecCCCCHHHHHHHHHH
Q 002133 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD-VVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
+....+++|.++.++.|.+++...+.+.+.++|++|+||||+|+.+++..... .|. .++-++.++..... ..+++++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHH
Confidence 34567789999988888888877777778899999999999999999886322 222 12223333322222 2222222
Q ss_pred HhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc--cccccCCCCCCCcccccCCCceEEEEEecch-hhhhh
Q 002133 227 QLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ-HVLRI 303 (961)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~-~v~~~ 303 (961)
.+...... ...++.-++++|+++.... .+.+...+-. ....+++++++... .+...
T Consensus 87 ~~~~~~~~--------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-------~~~~t~~il~~n~~~~i~~~ 145 (319)
T PLN03025 87 MFAQKKVT--------------LPPGRHKIVILDEADSMTSGAQQALRRTMEI-------YSNTTRFALACNTSSKIIEP 145 (319)
T ss_pred HHHhcccc--------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhc-------ccCCceEEEEeCCccccchh
Confidence 11100000 0013457899999987522 1222111111 23456677666442 22111
Q ss_pred cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 304 NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 304 ~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
-......++++++++++....+...+..+...-+ .+....|++.++|-.-.+
T Consensus 146 L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 146 IQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred HHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 0112257899999999999998887753322222 345678888898876433
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=4.5e-06 Score=94.94 Aligned_cols=200 Identities=14% Similarity=0.186 Sum_probs=109.9
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
..+.+++|.+..++.|.+++...++. .+.++|..|+||||+|+.+.+...-... +..--+. +.....-...+.|...
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~~-~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGIT-AQPCGQCRACTEIDAG 90 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccCC-CCCCcccHHHHHHHcC
Confidence 45778999999999999999876654 5689999999999999999987642110 0000000 0000000111111100
Q ss_pred h-----CCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceE-EEEEe
Q 002133 228 L-----GLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWT-LLLAS 295 (961)
Q Consensus 228 l-----~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~-IlvTt 295 (961)
- .++....... +.+.++.+.+. .++.-++|||+++.. ..++.+...+-+ -..+.+ |++||
T Consensus 91 ~hpDviEIdAas~~gV-DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE-------PP~~v~FILaTt 162 (700)
T PRK12323 91 RFVDYIEMDAASNRGV-DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE-------PPEHVKFILATT 162 (700)
T ss_pred CCCcceEecccccCCH-HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc-------CCCCceEEEEeC
Confidence 0 0000000011 11222222221 245678999999876 334444333322 223445 55555
Q ss_pred cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 296 RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 296 R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
....+..........+.++.++.++..+.+.+.+..+....+ .+..+.|++.++|.|.....+
T Consensus 163 ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d-~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 163 DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE-VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 555544221222357999999999999998887753322222 234578999999998654433
No 69
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.34 E-value=1e-05 Score=98.39 Aligned_cols=268 Identities=14% Similarity=0.171 Sum_probs=149.7
Q ss_pred cCCchHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhhc-CCCCEEEEEEecCCC---CHHHHHHHHHH
Q 002133 154 FPSRNPVFQKMMESLR---DSNVNMIGLYGMGGVGKTTLVKVVARQVVKE-DLFDVVVDAEVTHTP---DWKEICGRIAD 226 (961)
Q Consensus 154 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~---~~~~~~~~i~~ 226 (961)
++||+.+++.|.+.+. ...-.++.+.|..|||||+++++|......+ +.|-.-.+-...... ...+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999998886 3445699999999999999999999887643 111111111122221 12223333333
Q ss_pred Hh-------------------CCCccCC----------------------CCHHH-----HHHHHHHHHHcCCcEEEEEc
Q 002133 227 QL-------------------GLEIVRP----------------------DSLVE-----KANQLRQALKKKKRVLVILD 260 (961)
Q Consensus 227 ~l-------------------~~~~~~~----------------------~~~~~-----~~~~l~~~l~~~kr~LlVlD 260 (961)
++ |...... ..... ....+.......|+..+|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 2111000 00011 12223333344578999999
Q ss_pred ccc-cccc-cccccCCCCCCCcccccCCCceEEEEEecch-hhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCc
Q 002133 261 DIW-TQIN-LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESD 337 (961)
Q Consensus 261 dv~-~~~~-~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~ 337 (961)
|+. -+.. ++-+...... ..-.....+..-.+.|.+.. ............+.+.||+..+...+.....+.....
T Consensus 162 DlhWaD~~SL~lL~~lm~~-~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~-- 238 (849)
T COG3899 162 DLHWADSASLKLLQLLMDR-IAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL-- 238 (849)
T ss_pred cccccChhHHHHHHHHHHh-cchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--
Confidence 993 3211 0000000000 00000001112233333333 1112334555789999999999999999888753222
Q ss_pred hhHHHHHHHHhhCCchHHHHHHHHHhccC-------ChHHHHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHH
Q 002133 338 CRAIGVEIVGKCGGLPIAVSTIANALKGQ-------STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFL 410 (961)
Q Consensus 338 ~~~~~~~i~~~c~glPLai~~~~~~L~~~-------~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~c 410 (961)
..+....|.++-.|.|+-+..+-..+... +...|..-...+.. ....+.....+..-.+.||...++.
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~~t~~V 313 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPGTTREV 313 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCHHHHHH
Confidence 23467889999999999999988888742 33444433222111 1111111234777889999999999
Q ss_pred HHHhcCCCCCCCCChhhHHHH
Q 002133 411 FQLCGLLNDGSRLPIDDLIRY 431 (961)
Q Consensus 411 f~~~s~fp~~~~i~~~~li~~ 431 (961)
+...|++... |+.+.|...
T Consensus 314 l~~AA~iG~~--F~l~~La~l 332 (849)
T COG3899 314 LKAAACIGNR--FDLDTLAAL 332 (849)
T ss_pred HHHHHHhCcc--CCHHHHHHH
Confidence 9999999653 555555443
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.2e-06 Score=99.84 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=110.0
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
...++++|.+...+.|..++...+.. .+.++|+.|+||||+|+.+++.....+.+...+|.+.+.. .+...
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~--------~i~~~ 82 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL--------AVRRG 82 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH--------HHhcC
Confidence 44677899999999998888766654 5699999999999999999988753322222233322110 00000
Q ss_pred hC-----CCccCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEEEe-
Q 002133 228 LG-----LEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLAS- 295 (961)
Q Consensus 228 l~-----~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~IlvTt- 295 (961)
.. ++.... ...+.+..+.+.+. .+++-++|+|+++.. ..++.+...+.. ......+|++|
T Consensus 83 ~h~dv~el~~~~~-~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-------p~~~t~~Il~t~ 154 (504)
T PRK14963 83 AHPDVLEIDAASN-NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-------PPEHVIFILATT 154 (504)
T ss_pred CCCceEEeccccc-CCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-------CCCCEEEEEEcC
Confidence 00 000000 11112222333322 135678999999755 234444322222 22344545444
Q ss_pred cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 296 RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 296 R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
+...+..........+++.+++.++..+.+.+.+....... -.+....|++.++|.+--+
T Consensus 155 ~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 155 EPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred ChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 33333222223346899999999999999998875332222 2345678999999988544
No 71
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=6.8e-06 Score=93.74 Aligned_cols=178 Identities=16% Similarity=0.224 Sum_probs=108.3
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED-------------------LFDVVVD 208 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~w 208 (961)
....+++|.+...+.|.+++...+. +.+.++|+.|+||||+|+.+++...... .|.-++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 4577899999999999999986664 5678999999999999999988764211 1111122
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHH----HcCCcEEEEEccccccc--ccccccCCCCCCCccc
Q 002133 209 AEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQAL----KKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQS 282 (961)
Q Consensus 209 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~ 282 (961)
++.+....+. .+.++.... ..+++-++|+|+|.... ..+.+...+-.
T Consensus 92 IDAAs~~~Vd----------------------dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE----- 144 (702)
T PRK14960 92 IDAASRTKVE----------------------DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE----- 144 (702)
T ss_pred ecccccCCHH----------------------HHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----
Confidence 2222111111 112222221 12456789999998652 33333222222
Q ss_pred ccCCCceEEEEEecchh-hhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 283 VDNQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 283 ~~~~~gs~IlvTtR~~~-v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
..++.++|++|.+.. +..........+++++++.++..+.+.+.+.......+ .+....|++.++|-+..+
T Consensus 145 --PP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id-~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 145 --PPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD-QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred --CCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 234556777665532 22111233468999999999999999887754332222 344578999999977444
No 72
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=4e-07 Score=71.80 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=37.9
Q ss_pred CceeEEEecCCCCCCCC-ccccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEeccCcC
Q 002133 559 TELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSHI 616 (961)
Q Consensus 559 ~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l 616 (961)
++|++|++++|.+..+| ..|..+++|++|++++|.++. +..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45677777777777665 346667777777777666665 35566666666666666643
No 73
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.32 E-value=2.1e-05 Score=92.48 Aligned_cols=204 Identities=17% Similarity=0.063 Sum_probs=117.1
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC---EEEEEEecCC---CCHHHHHHH
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD---VVVDAEVTHT---PDWKEICGR 223 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~---~~~~~~~~~ 223 (961)
..+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++..+....+. ..-|+.+... .+...+...
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 4567889999999888887666667899999999999999999998765433331 1234444321 122222111
Q ss_pred ---------------HHHHhCCCcc-----------------CCCCHHHHHHHHHHHHHcCCcEEEEEcccccc--cccc
Q 002133 224 ---------------IADQLGLEIV-----------------RPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLD 269 (961)
Q Consensus 224 ---------------i~~~l~~~~~-----------------~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~ 269 (961)
.+...+.... -..-....+..+.+.+.. +++.++-|+.|.. ..|+
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCcccch
Confidence 1122221100 000123356677777765 6788887766654 3466
Q ss_pred cccCCCCCCCcccccCCCceEEEE--Eecchhhh-hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHH
Q 002133 270 DIGIPFWDGEKQSVDNQGRWTLLL--ASRDQHVL-RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIV 346 (961)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~gs~Ilv--TtR~~~v~-~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~ 346 (961)
.+...+.. ..+..-|+| ||++.... .........+.+.+++.++.+.++.+.+......- -.++.+.|+
T Consensus 311 ~ik~~~~~-------~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l-s~eal~~L~ 382 (615)
T TIGR02903 311 YIKKLFEE-------GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL-AAGVEELIA 382 (615)
T ss_pred hhhhhccc-------CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence 55444433 334444544 56644321 11111224678999999999999998775322111 134455666
Q ss_pred HhhCCchHHHHHHHHH
Q 002133 347 GKCGGLPIAVSTIANA 362 (961)
Q Consensus 347 ~~c~glPLai~~~~~~ 362 (961)
+....-+.|+..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 6665556666666544
No 74
>PRK04195 replication factor C large subunit; Provisional
Probab=98.32 E-value=3.5e-05 Score=88.85 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=110.1
Q ss_pred cCCccccCCchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 148 VRGYVHFPSRNPVFQKMMESLRD----SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
+....+++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ .+-++.++..+.. .+..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHH
Confidence 34467799999999999988862 2267899999999999999999998764 33 2334444433222 2233
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc------cccccCCCCCCCcccccCCCceEEEEEecc
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------LDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~ 297 (961)
++....... .+...++-+||+|+++.... +..+...+ ...+..||+|+.+
T Consensus 84 ~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l---------~~~~~~iIli~n~ 139 (482)
T PRK04195 84 VAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELI---------KKAKQPIILTAND 139 (482)
T ss_pred HHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHH---------HcCCCCEEEeccC
Confidence 322211100 00012568999999976532 22221111 1233446666644
Q ss_pred hhhh-h-hcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHh
Q 002133 298 QHVL-R-INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (961)
Q Consensus 298 ~~v~-~-~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 363 (961)
..-. . ........+.+.+++.++....+.+.+......-+ .+....|++.++|-.-++......+
T Consensus 140 ~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~-~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 140 PYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD-DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2211 1 11223457899999999999988887753322222 3567889999999776554433333
No 75
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.31 E-value=1.3e-05 Score=87.85 Aligned_cols=182 Identities=13% Similarity=0.099 Sum_probs=104.4
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEe--cCCCCHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV--THTPDWKEICGRIAD 226 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~ 226 (961)
....+++|+++.++.+..++.....+.+.++|..|+||||+|+.+++...... +.. .++.+ +....... ..+.+.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~~~-~~~~i~ 90 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGIDV-IRNKIK 90 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccchHH-HHHHHH
Confidence 44667889999999999998877777789999999999999999998864322 211 12222 22222111 111111
Q ss_pred HhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecchh-hhhh
Q 002133 227 QLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH-VLRI 303 (961)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~-v~~~ 303 (961)
.+....+ .....+-+|++|+++... ....+...+.. ....+++|+++.... ....
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~-------~~~~~~lIl~~~~~~~l~~~ 148 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEM-------YSQNTRFILSCNYSSKIIDP 148 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhc-------CCCCCeEEEEeCCccccchh
Confidence 1110000 000234688999986542 12222111111 223456776664321 1111
Q ss_pred cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 304 NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 304 ~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
.......+++.+++.++....+...+......- ..+....+++.++|.+.-+
T Consensus 149 l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i-~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 149 IQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI-TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 112234689999999999888888775332211 1345678899999987554
No 76
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.31 E-value=4e-06 Score=80.14 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=46.3
Q ss_pred CCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC
Q 002133 155 PSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (961)
Q Consensus 155 ~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (961)
.||+..+..+...+.....+.+.|+|++|+|||++|+++++..... -..++++...+..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~ 59 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLL 59 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhh
Confidence 3788889999888877667789999999999999999999987522 2345677665543
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.30 E-value=1e-07 Score=107.99 Aligned_cols=132 Identities=27% Similarity=0.356 Sum_probs=98.4
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCCCccccCCCCCcEEEe
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSF 611 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l 611 (961)
.+..+..+.+..|.+.. +- .-+..+++|..|++.+|.+..+...+..+++|++|++++|.|+++..+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-IL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhh-hh-cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 34555556666666542 11 21366788888888888888777667888899999999998888888888888999999
Q ss_pred ccCcCCccchhhhcCCCcCEEecCCCCCCcccCh-HHHhcCccCCEEEccCCCCcccc
Q 002133 612 RNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKP-EVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 612 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
.+|.|+.++. +..+++|+.+++++ +.+..+.. . +..+.+|+.+.+.+|.+..+.
T Consensus 148 ~~N~i~~~~~-~~~l~~L~~l~l~~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 148 SGNLISDISG-LESLKSLKLLDLSY-NRIVDIENDE-LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred ccCcchhccC-CccchhhhcccCCc-chhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence 9988887764 55688888888888 56666654 2 467888888888888665544
No 78
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.29 E-value=2e-06 Score=85.88 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=35.4
Q ss_pred ccCCchHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 002133 153 HFPSRNPVFQKMMESLR---DSNVNMIGLYGMGGVGKTTLVKVVARQVVKED 201 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 201 (961)
.|+||+++++++...+. ....+.+.|+|.+|+|||+++++++......+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 37999999999999993 45568999999999999999999999988763
No 79
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.29 E-value=2.2e-06 Score=91.66 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=63.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC--CHHHHHHHHHHHhCCCccCCCCH------HHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP--DWKEICGRIADQLGLEIVRPDSL------VEKANQ 244 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~------~~~~~~ 244 (961)
-...+|+|++|+||||||+++|+....+ +|+.++||.+.+.. ++.++++++...+-......... ....+.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999998765 89999999999887 77888888863221111111111 111222
Q ss_pred HHHHHHcCCcEEEEEcccccc
Q 002133 245 LRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 245 l~~~l~~~kr~LlVlDdv~~~ 265 (961)
.......++.++|++|++..-
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHH
Confidence 223334578999999998654
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.7e-05 Score=89.69 Aligned_cols=189 Identities=17% Similarity=0.271 Sum_probs=107.6
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CCEEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDL-------------------FDVVVD 208 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~w 208 (961)
....+++|.+.....|...+..++. +.+.++|++|+||||+|+.+++....... +...+.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 4467899999988888888877666 45789999999999999999887542110 001222
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc--cccccccCCCCCCCcccccCC
Q 002133 209 AEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQ 286 (961)
Q Consensus 209 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~ 286 (961)
++.+.......+ +++....... -..+++-++|+|+++.. ...+.+...+.. ..
T Consensus 91 l~aa~~~gid~i-R~i~~~~~~~-----------------p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-------p~ 145 (472)
T PRK14962 91 LDAASNRGIDEI-RKIRDAVGYR-----------------PMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-------PP 145 (472)
T ss_pred EeCcccCCHHHH-HHHHHHHhhC-----------------hhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-------CC
Confidence 232222222221 1222111100 01135678999998754 223333222211 12
Q ss_pred CceEEEEEecc-hhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhC-CchHHHHHHHHHh
Q 002133 287 GRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCG-GLPIAVSTIANAL 363 (961)
Q Consensus 287 ~gs~IlvTtR~-~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~-glPLai~~~~~~L 363 (961)
+...+|++|.+ ..+..........+++.+++.++....+.+.+......-+ .+....|++.++ +++.|+..+-.+.
T Consensus 146 ~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~-~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID-REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33444444433 3333222334468999999999998888887743221111 345677888775 4567776665543
No 81
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.8e-05 Score=90.39 Aligned_cols=187 Identities=12% Similarity=0.171 Sum_probs=108.3
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED-------------------LFDVVVD 208 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~w 208 (961)
..+.+++|.+..+..+...+...+. +.+.++|+.|+||||+|+.+++...... .|...++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 4467889999999999998876555 4578999999999999999998654211 1222233
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc--cccccccCCCCCCCcccccCC
Q 002133 209 AEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQ 286 (961)
Q Consensus 209 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~ 286 (961)
++......+.++ ++++ +.+...-..+++-++|+|++... ..++.+...+-+ ..
T Consensus 93 idaas~~gvd~i-r~ii-----------------~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-------pp 147 (546)
T PRK14957 93 IDAASRTGVEET-KEIL-----------------DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-------PP 147 (546)
T ss_pred eecccccCHHHH-HHHH-----------------HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-------CC
Confidence 332222222111 1111 11111111246679999999754 233444322222 22
Q ss_pred CceEEE-EEecchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch-HHHHHHHH
Q 002133 287 GRWTLL-LASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAVSTIAN 361 (961)
Q Consensus 287 ~gs~Il-vTtR~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 361 (961)
..+.+| +||....+..........+++.+++.++....+.+.+....... -.+....|++.++|-+ .|+..+-.
T Consensus 148 ~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~-e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 148 EYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS-DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345555 55544444322123346899999999998888887664322222 2344577899999865 45544443
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=6.9e-06 Score=91.16 Aligned_cols=193 Identities=13% Similarity=0.183 Sum_probs=110.2
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
..+.+++|.+..+..|..++...++. .+.++|+.|+||||+|+.+++......... ...+....+. ..+...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC----~~i~~g 87 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSC----LEITKG 87 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHH----HHHHcc
Confidence 45678899999999999998877754 578999999999999999998764321110 0011111111 111111
Q ss_pred hCCCccCC----CCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEE-EEec
Q 002133 228 LGLEIVRP----DSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLL-LASR 296 (961)
Q Consensus 228 l~~~~~~~----~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~Il-vTtR 296 (961)
...+.... ....+.+..+.+.+. .++.-++|+|++... ..++.+...+-. ......+| .||.
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-------Pp~~viFILaTte 160 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-------PPAHIVFILATTE 160 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-------CCCceEEEeecCC
Confidence 11110000 011112223333322 245678999999865 345554333322 22344444 5555
Q ss_pred chhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 297 DQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 297 ~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
...+...-......|.+.+++.++..+.+.+.+..+....+ .+....|++.++|.+.-+
T Consensus 161 ~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e-~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 161 FHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD-QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCChHHHH
Confidence 44443222233357999999999998888887653322222 345678999999998433
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=2.3e-05 Score=88.99 Aligned_cols=196 Identities=14% Similarity=0.156 Sum_probs=109.1
Q ss_pred cCCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCE-EEEEEecCCCCHHHHHHHHH
Q 002133 148 VRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV-VVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 225 (961)
+....+++|.+..+..+...+..++. +.+.++|+.|+||||+|+.+++.......... --+..+... .....+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~ 92 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFN 92 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHh
Confidence 34567889999999988887765554 57889999999999999999987643211100 000000000 0011111
Q ss_pred HHhCCC-----ccCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEE-E
Q 002133 226 DQLGLE-----IVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLL-L 293 (961)
Q Consensus 226 ~~l~~~-----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~Il-v 293 (961)
...... .......+ .+..+.+... .+++-++|+|+++.. ..++.+...+.. ..+.+.+| +
T Consensus 93 ~~~h~Dv~eidaas~~~vd-~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe-------pp~~~vfI~a 164 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVD-DIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE-------PPPHIIFIFA 164 (507)
T ss_pred cCCCCcEEEeeccCCCCHH-HHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh-------cCCCEEEEEE
Confidence 100000 00000111 1222222221 145678999999875 335555333322 23455555 4
Q ss_pred EecchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 294 ASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 294 TtR~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
||+.+.+..........+++.+++.++....+.+.+..+....+ .+....|++.++|.+--+
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARDA 226 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 55554543222233457999999999999999988864332222 244577999999877433
No 84
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=3.5e-08 Score=98.41 Aligned_cols=83 Identities=29% Similarity=0.369 Sum_probs=43.0
Q ss_pred ceeEEEecCCCCC--CCCccccCCcCCCEEEccCCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCC
Q 002133 560 ELLVLHLTGIHFP--SLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNC 637 (961)
Q Consensus 560 ~L~~L~L~~~~~~--~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 637 (961)
.|++|||+...++ .+-..+..|.+|+.|.|.++++.+ .+-..+.+-.+|+.|+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD---------------------~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD---------------------PIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc---------------------HHHHHHhccccceeeccccc
Confidence 3555666655554 233334445555555555555544 22233444455666666665
Q ss_pred CCCcccChH-HHhcCccCCEEEccCCC
Q 002133 638 SKLKVIKPE-VISRLSRLNELYMGNSF 663 (961)
Q Consensus 638 ~~l~~~~~~-~l~~l~~L~~L~l~~~~ 663 (961)
+.++..... .+.+++.|.+|+++.|+
T Consensus 245 sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 245 SGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred cccchhHHHHHHHhhhhHhhcCchHhh
Confidence 555543322 24566667777766664
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.9e-05 Score=88.92 Aligned_cols=181 Identities=14% Similarity=0.161 Sum_probs=108.8
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhh--------------------cCCCCEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVK--------------------EDLFDVVV 207 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~f~~~~ 207 (961)
..+.+++|.+..++.+.+.+..+++. .+.++|+.|+||||+|+.++...-- ..|.| ++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D-v~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD-VI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC-EE
Confidence 44678899999999888888766655 7889999999999999999875421 11222 33
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccC
Q 002133 208 DAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDN 285 (961)
Q Consensus 208 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 285 (961)
.++.+....+.++ +++++...... -.+++-++|+|++.... ..+.+...+-+ -
T Consensus 89 eidaas~~~vddI-R~Iie~~~~~P-----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-------P 143 (491)
T PRK14964 89 EIDAASNTSVDDI-KVILENSCYLP-----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEE-------P 143 (491)
T ss_pred EEecccCCCHHHH-HHHHHHHHhcc-----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhC-------C
Confidence 4444333333322 22222211000 01355689999997652 23333222222 2
Q ss_pred CCceEEEEEe-cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 286 QGRWTLLLAS-RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 286 ~~gs~IlvTt-R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
.+.+++|++| ..+.+..........+++.+++.++....+.+.+..+...-+ .+....|++.++|-+..+
T Consensus 144 p~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~-~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 144 APHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD-EESLKLIAENSSGSMRNA 214 (491)
T ss_pred CCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 3456655555 334443222233467999999999999999888754332222 234578999998877543
No 86
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.1e-08 Score=97.22 Aligned_cols=174 Identities=24% Similarity=0.245 Sum_probs=129.3
Q ss_pred CCCcEEecCCCCCC--CCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCC-CC--CCCccccCCcCCC
Q 002133 512 KNPTAISIPFRDIS--ELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIH-FP--SLPLSLGSLINLR 585 (961)
Q Consensus 512 ~~l~~L~l~~~~~~--~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~-~~--~lp~~~~~l~~L~ 585 (961)
..+++++++...+. .+...+ .|.+|+.|.+.++.+...+-..+ ..-.+|+.|+|+.++ ++ .+.--+.+|+.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35788999887773 333333 89999999999999887766655 667899999999985 34 2333478899999
Q ss_pred EEEccCCCCCCCc---ccc-CCCCCcEEEeccCc----CCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEE
Q 002133 586 TLSFDCCHLEDVA---RVG-DLAKLEILSFRNSH----IEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNEL 657 (961)
Q Consensus 586 ~L~L~~~~l~~~~---~~~-~l~~L~~L~l~~~~----l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 657 (961)
.|+|++|.+..+. .+. --.+|..|+++|+. .+.+.--..++++|.+|||++|..++.--...|.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 9999999876631 111 12578999999972 224444457899999999999988876444557899999999
Q ss_pred EccCCCCccccCCCccchHhhcCCCCCCEEEccC
Q 002133 658 YMGNSFTRKVEGQSNASVVELKQLSSLTILDMHI 691 (961)
Q Consensus 658 ~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 691 (961)
.++.|+.- .+..+-++...+.|.+|++..
T Consensus 344 SlsRCY~i-----~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 344 SLSRCYDI-----IPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred ehhhhcCC-----ChHHeeeeccCcceEEEEecc
Confidence 99998632 234556788888999998873
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=1.9e-05 Score=91.69 Aligned_cols=195 Identities=13% Similarity=0.158 Sum_probs=109.0
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
..+.+++|.+..+..|...+..+++. .+.++|+.|+||||+|+.+++..-....+.. .....-...+.|...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~~g 85 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIEQG 85 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHHcC
Confidence 44778999999999999988776654 4689999999999999999887643211100 000001112222110
Q ss_pred hCC-----CccCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEE-EEEe
Q 002133 228 LGL-----EIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTL-LLAS 295 (961)
Q Consensus 228 l~~-----~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~I-lvTt 295 (961)
-.. +.... ...+.+..+.+.+. .+++-++|||++... ...+.+...+-+ -.+..++ ++||
T Consensus 86 ~~~D~ieidaas~-~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-------Pp~~v~FIL~Tt 157 (647)
T PRK07994 86 RFVDLIEIDAASR-TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLATT 157 (647)
T ss_pred CCCCceeeccccc-CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-------CCCCeEEEEecC
Confidence 000 00000 01111222222221 246678999999765 234444222222 2234444 4455
Q ss_pred cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 296 RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 296 R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
....+..........+.+.+++.++....+.+.+.......+ ......|++.++|.+--+..+
T Consensus 158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e-~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE-PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 444443221222468999999999999999887643222222 344578999999987644333
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.1e-05 Score=89.68 Aligned_cols=196 Identities=13% Similarity=0.171 Sum_probs=107.6
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCC--CEEEEEEecCCCCHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLF--DVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
..+.+++|.+..+..|.+++...+. ..+.++|+.|+||||+|+.+++..--.... .....-.+ +.-...+.|.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC----g~C~~C~~i~ 88 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC----GVCQACRDID 88 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC----CccHHHHHHH
Confidence 4567889999999999999887665 456899999999999999998765321100 00000000 0111111111
Q ss_pred HHhC-----CCccCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEEE
Q 002133 226 DQLG-----LEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (961)
Q Consensus 226 ~~l~-----~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~IlvT 294 (961)
..-. ++....... +.+.++.+... .++.-++|||+|+.. ..++.+...+-+ -....++|++
T Consensus 89 ~g~h~D~~eldaas~~~V-d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-------PP~~~~fIL~ 160 (618)
T PRK14951 89 SGRFVDYTELDAASNRGV-DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-------PPEYLKFVLA 160 (618)
T ss_pred cCCCCceeecCcccccCH-HHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc-------CCCCeEEEEE
Confidence 1000 000000011 11222222221 134568899999875 234444333322 2334555555
Q ss_pred e-cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHH
Q 002133 295 S-RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVS 357 (961)
Q Consensus 295 t-R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 357 (961)
| ....+..........+++++++.++..+.+.+.+.......+ .+....|++.++|-+.-+.
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie-~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE-PQALRLLARAARGSMRDAL 223 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 4 434443222333468999999999999888887753322222 3456788899998775443
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=4.1e-05 Score=84.57 Aligned_cols=173 Identities=12% Similarity=0.088 Sum_probs=101.7
Q ss_pred ccccCCchHHHHHHHHHhccCC----------ccEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------C
Q 002133 151 YVHFPSRNPVFQKMMESLRDSN----------VNMIGLYGMGGVGKTTLVKVVARQVVKE-------------------D 201 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~ 201 (961)
...++|.+..++.|..++..+. .+.+.++|+.|+|||++|+.++...--. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 4568899999999988887543 4568899999999999999998765321 1
Q ss_pred CCCEEEEEEec-CCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCC
Q 002133 202 LFDVVVDAEVT-HTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIP 274 (961)
Q Consensus 202 ~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~ 274 (961)
|.|. .++... ....+ +.+..+.+... .+++-++++|+++... ..+.+...
T Consensus 84 hpD~-~~i~~~~~~i~i----------------------~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 84 HPDV-RVVAPEGLSIGV----------------------DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CCCE-EEeccccccCCH----------------------HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 2221 111111 11111 11223333222 1345678889997652 22333222
Q ss_pred CCCCCcccccCCCceEEEEEecc-hhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 275 FWDGEKQSVDNQGRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 275 ~~~~~~~~~~~~~gs~IlvTtR~-~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
+-. ..++..+|++|.+ ..+...-......+.+.+++.++..+.+.+..+. + .+.+..+++.++|.|
T Consensus 141 LEe-------p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~~ 207 (394)
T PRK07940 141 VEE-------PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGHI 207 (394)
T ss_pred hhc-------CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCCH
Confidence 211 2234455555544 3443221233468999999999998888754321 1 244678999999999
Q ss_pred HHHHHH
Q 002133 354 IAVSTI 359 (961)
Q Consensus 354 Lai~~~ 359 (961)
.....+
T Consensus 208 ~~A~~l 213 (394)
T PRK07940 208 GRARRL 213 (394)
T ss_pred HHHHHH
Confidence 755443
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.8e-05 Score=88.87 Aligned_cols=197 Identities=11% Similarity=0.187 Sum_probs=106.4
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
....+++|++..++.+.+++...+. +.+.++|+.|+||||+|+.+++...... |.... ..+.-...+.+...
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINTN 85 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHcC
Confidence 4567889999999999998876554 4688999999999999999998764221 11110 00111111111111
Q ss_pred hCCCc-----cCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEE-EEe
Q 002133 228 LGLEI-----VRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLL-LAS 295 (961)
Q Consensus 228 l~~~~-----~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~Il-vTt 295 (961)
...+. ...... +.+..+.+... .+++-++|+|+++.. ..++.+...+-. ..+...+| +|+
T Consensus 86 ~h~DiieIdaas~igV-d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-------Pp~~tvfIL~Tt 157 (605)
T PRK05896 86 QSVDIVELDAASNNGV-DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-------PPKHVVFIFATT 157 (605)
T ss_pred CCCceEEeccccccCH-HHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-------CCCcEEEEEECC
Confidence 10000 000011 11122222211 123456999998764 334444322221 12344444 444
Q ss_pred cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH-HHHHHHH
Q 002133 296 RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVSTIAN 361 (961)
Q Consensus 296 R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 361 (961)
....+..........+++.+++.++....+...+......-+ .+.+..+++.++|-+. |+..+-.
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is-~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE-DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 444432211223457899999999999888887643221111 3456788999999664 4444443
No 91
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.16 E-value=4.7e-05 Score=78.81 Aligned_cols=192 Identities=15% Similarity=0.156 Sum_probs=119.5
Q ss_pred hHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCC----CEEEEEEecCCCCHHHHHHHHHHHhCC
Q 002133 158 NPVFQKMMESLR---DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLF----DVVVDAEVTHTPDWKEICGRIADQLGL 230 (961)
Q Consensus 158 ~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 230 (961)
.+.++.+.+.+. ....+-+.|||.+|+|||++++++...+.....- -.++.|.....++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344556656555 3345668999999999999999999876532111 146778888999999999999999999
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc---------cccccCCCCCCCcccccCCCceEEEEEecchhhh
Q 002133 231 EIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN---------LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL 301 (961)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~ 301 (961)
+.....+.......+...++.-+--+||+|++.+.-. .+.++ .+.. .-.=+-|.|-|+...-+
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~N-------eL~ipiV~vGt~~A~~a 194 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGN-------ELQIPIVGVGTREAYRA 194 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhh-------ccCCCeEEeccHHHHHH
Confidence 8876656666666666777665567889999976411 11110 0111 11223455666554433
Q ss_pred hh---c-CCCCceEEccCCCHH-HHHHHHHHHhC----CCCCCCchhHHHHHHHHhhCCchHHHH
Q 002133 302 RI---N-MSNPRIFSISTLADG-EAKSLFEKIVG----DSAKESDCRAIGVEIVGKCGGLPIAVS 357 (961)
Q Consensus 302 ~~---~-~~~~~~~~l~~L~~~-~s~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~glPLai~ 357 (961)
-. . ......+.+.....+ +...|+..... .....-...++++.|...++|+.--+.
T Consensus 195 l~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 195 LRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred hccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 00 0 111235566666544 44445443321 222223446789999999999975543
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.16 E-value=1.8e-05 Score=93.97 Aligned_cols=172 Identities=20% Similarity=0.315 Sum_probs=97.6
Q ss_pred CCccccCCchHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQ---KMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 149 ~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
...++|+|++..+. .+...+...+...+.++|++|+||||+|+.+++... .+|. .++... ....+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~d------ 92 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKD------ 92 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHH------
Confidence 44567889988774 455666667777789999999999999999998754 3331 111110 01111
Q ss_pred HHhCCCccCCCCHHHHHHHHHHHHH-cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEEE--ecchh-
Q 002133 226 DQLGLEIVRPDSLVEKANQLRQALK-KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLA--SRDQH- 299 (961)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~IlvT--tR~~~- 299 (961)
..+......+.+. .+++.+|||||++.. .+++.+... -..|+.++|+ |.+..
T Consensus 93 ------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~----------lE~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 93 ------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW----------VENGTITLIGATTENPYF 150 (725)
T ss_pred ------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH----------hcCceEEEEEecCCChHh
Confidence 1111122222221 135679999999754 233333221 1234555553 33321
Q ss_pred -hhhhcCCCCceEEccCCCHHHHHHHHHHHhCC------CCCCCchhHHHHHHHHhhCCchH
Q 002133 300 -VLRINMSNPRIFSISTLADGEAKSLFEKIVGD------SAKESDCRAIGVEIVGKCGGLPI 354 (961)
Q Consensus 300 -v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~------~~~~~~~~~~~~~i~~~c~glPL 354 (961)
+..........+.+++++.++...++.+.+.. .....--++....|++.+.|.--
T Consensus 151 ~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 151 EVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11111122457999999999999999887641 11111123455778888877643
No 93
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3.1e-05 Score=88.73 Aligned_cols=182 Identities=14% Similarity=0.210 Sum_probs=106.8
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CCEEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDL-------------------FDVVVD 208 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~w 208 (961)
..+.+++|.+..++.|.+++...++. .+.++|+.|+||||+|+.+++..--... |.-++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 45778999999999999999876665 5689999999999999999987642211 112333
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc--cccccccCCCCCCCcccccCC
Q 002133 209 AEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQ 286 (961)
Q Consensus 209 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~ 286 (961)
++.+....+.++ +++++.+.... ..++.-++|+|+|... ...+.+...+-. -.
T Consensus 93 idaas~~~v~~i-R~l~~~~~~~p-----------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-------pp 147 (509)
T PRK14958 93 VDAASRTKVEDT-RELLDNIPYAP-----------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEE-------PP 147 (509)
T ss_pred EcccccCCHHHH-HHHHHHHhhcc-----------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhc-------cC
Confidence 333222222222 22222221110 1245568899999865 233333222222 22
Q ss_pred CceEEEEEecc-hhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 287 GRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 287 ~gs~IlvTtR~-~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
..+++|++|.+ ..+..........+++++++.++....+.+.+.......+ .+....|++.++|-+.-+
T Consensus 148 ~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 148 SHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDA 217 (509)
T ss_pred CCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHH
Confidence 35666655543 3332111222356889999999988777766643322222 234567888898877544
No 94
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=2.1e-05 Score=90.84 Aligned_cols=178 Identities=12% Similarity=0.207 Sum_probs=104.7
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCC-------------------CCEEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDL-------------------FDVVVD 208 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~w 208 (961)
..+.+++|.+..+..|..++...++ +.+.++|+.|+||||+|+.+++....... |..++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 4577899999999999999886665 46799999999999999999886532111 111122
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHH----HcCCcEEEEEcccccccc--cccccCCCCCCCccc
Q 002133 209 AEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQAL----KKKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQS 282 (961)
Q Consensus 209 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~ 282 (961)
++.+....+ +.+..+.+.. ..+++-++|||++..... .+.+...+-.
T Consensus 93 idaAs~~gV----------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE----- 145 (709)
T PRK08691 93 IDAASNTGI----------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE----- 145 (709)
T ss_pred EeccccCCH----------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-----
Confidence 222221111 1111222211 114567899999876432 2222222211
Q ss_pred ccCCCceEEEEEecch-hhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 283 VDNQGRWTLLLASRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 283 ~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
-...+++|++|.+. .+..........+.+.+++.++....+.+.+.......+ .+....|++.++|.+.-+
T Consensus 146 --Pp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id-~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 146 --PPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE-PPALQLLGRAAAGSMRDA 217 (709)
T ss_pred --CCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHhCCCHHHH
Confidence 22345666666443 222111122246788899999999988887754332222 345678999999888544
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.13 E-value=7.6e-05 Score=83.18 Aligned_cols=185 Identities=12% Similarity=0.200 Sum_probs=107.8
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc--------------------CCCCEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE--------------------DLFDVVV 207 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~ 207 (961)
....+++|.++.++.+.+++...+. +.+.++|+.|+||||+|+.++...... .+++. +
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 4466789999999999998876654 467899999999999999999876421 12322 2
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc--cccccccCCCCCCCcccccC
Q 002133 208 DAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDN 285 (961)
Q Consensus 208 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~ 285 (961)
+++........ -.+++...+.... ..+++-++|+|+++.. ...+.+...+.. .
T Consensus 90 ~~~~~~~~~~~-~~~~l~~~~~~~p-----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~-------~ 144 (355)
T TIGR02397 90 EIDAASNNGVD-DIREILDNVKYAP-----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEE-------P 144 (355)
T ss_pred EeeccccCCHH-HHHHHHHHHhcCc-----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhC-------C
Confidence 33222111111 1122222211100 0134568899998654 223333222211 2
Q ss_pred CCceEEEEEecchh-hhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHH
Q 002133 286 QGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (961)
Q Consensus 286 ~~gs~IlvTtR~~~-v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 360 (961)
.+.+.+|++|.+.. +..........+++.++++++..+.+..++.......+ .+.+..+++.++|.|..+....
T Consensus 145 ~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~-~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 145 PEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE-DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred ccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCChHHHHHHH
Confidence 34556666664433 22111223357899999999998888887743221111 3567788999999886654443
No 96
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.12 E-value=1.2e-06 Score=90.00 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=9.5
Q ss_pred hcCCCcEEecCCCCC
Q 002133 510 ARKNPTAISIPFRDI 524 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~ 524 (961)
....+..+++++|.+
T Consensus 28 ~~~s~~~l~lsgnt~ 42 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTF 42 (382)
T ss_pred ccCceEEEeccCCch
Confidence 345666677776666
No 97
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=6.8e-05 Score=81.69 Aligned_cols=201 Identities=13% Similarity=0.100 Sum_probs=115.1
Q ss_pred cCCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCC--CCEEEEEEecCCCCHHHHHHHH
Q 002133 148 VRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDL--FDVVVDAEVTHTPDWKEICGRI 224 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i 224 (961)
+.....++|.++....+...+...+. ..+.|+|+.|+||||+|..+++..-.... +... ............+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 34567789999999999999886664 46889999999999999999988643110 1111 001111111233333
Q ss_pred HHHhC-------CC--ccC----CCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCcccccC
Q 002133 225 ADQLG-------LE--IVR----PDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDN 285 (961)
Q Consensus 225 ~~~l~-------~~--~~~----~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 285 (961)
...-+ .+ ... ..-..+.+..+.+++. .+++-++|+|+++... ..+.+...+.. +.
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------pp 169 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------PP 169 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc------CC
Confidence 22211 00 000 0011233445666554 2466789999998652 22333222211 02
Q ss_pred CCceEEEEEecchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHH
Q 002133 286 QGRWTLLLASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (961)
Q Consensus 286 ~~gs~IlvTtR~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 360 (961)
....-|++|++...+...-......+.+.+++.++..+.+........ -..+....|++.++|.|.....+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223345666555444322222335899999999999999987432211 113456789999999998665443
No 98
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=9.6e-05 Score=80.97 Aligned_cols=198 Identities=15% Similarity=0.066 Sum_probs=110.8
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEE---E-EEEecCCCCHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVV---V-DAEVTHTPDWKEICGR 223 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~---~-wv~~~~~~~~~~~~~~ 223 (961)
.....++|.++....+.+.+...++. .+.++|+.|+||+|+|..+++..--+...... . -.+... ...-...+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~~ 94 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVARR 94 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHHH
Confidence 34567899999999999998876654 58899999999999999999876432211000 0 000000 000011122
Q ss_pred HHHHhCCC---------ccC----CCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCccccc
Q 002133 224 IADQLGLE---------IVR----PDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVD 284 (961)
Q Consensus 224 i~~~l~~~---------~~~----~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 284 (961)
+...-..+ ..+ ..-..+.+..+.+.+. .+.+-++|+||++... ..+.+...+..
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe------- 167 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE------- 167 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc-------
Confidence 21111000 000 0001233444555443 2456789999997652 23333222222
Q ss_pred CCCceEEEEEecch-hhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 285 NQGRWTLLLASRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 285 ~~~gs~IlvTtR~~-~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
-..++.+|++|.+. .+..........+.+.+++.++..+++........ ......+++.++|.|+.+..+
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 22345566666554 33322233446899999999999999987642211 112267899999999866444
No 99
>PRK09087 hypothetical protein; Validated
Probab=98.09 E-value=4.4e-05 Score=77.98 Aligned_cols=161 Identities=17% Similarity=0.100 Sum_probs=92.3
Q ss_pred ccccC--CchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 002133 151 YVHFP--SRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL 228 (961)
Q Consensus 151 ~~~~~--gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 228 (961)
.+.|+ +.+...-.+++.+.....+.+.|+|+.|+|||+|++.++..... .+++.. .+..++.
T Consensus 20 ~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~--- 83 (226)
T PRK09087 20 RDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAA--- 83 (226)
T ss_pred hhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHH---
Confidence 34454 33443333333322333467899999999999999998875421 133321 1111111
Q ss_pred CCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc----ccccccCCCCCCCcccccCCCceEEEEEecchhhh---
Q 002133 229 GLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI----NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL--- 301 (961)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~--- 301 (961)
..+.+ -+|++||+.... .+-.+.... ...|..||+|++.....
T Consensus 84 ------------------~~~~~---~~l~iDDi~~~~~~~~~lf~l~n~~---------~~~g~~ilits~~~p~~~~~ 133 (226)
T PRK09087 84 ------------------NAAAE---GPVLIEDIDAGGFDETGLFHLINSV---------RQAGTSLLMTSRLWPSSWNV 133 (226)
T ss_pred ------------------Hhhhc---CeEEEECCCCCCCCHHHHHHHHHHH---------HhCCCeEEEECCCChHHhcc
Confidence 11111 378889996431 111111111 22356788888742211
Q ss_pred -----hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHH
Q 002133 302 -----RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (961)
Q Consensus 302 -----~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 358 (961)
...+....++++++++.++-.+++++++..... .--+++..-|++.+.|..-++..
T Consensus 134 ~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~-~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 134 KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQL-YVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhhhHHHHHH
Confidence 222455678999999999999999998854221 11245677888888887766654
No 100
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=1.3e-06 Score=102.92 Aligned_cols=149 Identities=19% Similarity=0.251 Sum_probs=105.1
Q ss_pred hhcCCCcEEecCCCCC--CCCCCcc--CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCC
Q 002133 509 AARKNPTAISIPFRDI--SELPDSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINL 584 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~--~~lp~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L 584 (961)
....++++|++++... ...|... .+|.|++|.+.+-.+...--..++.++++|+.||+|+++++.+ ..+++|++|
T Consensus 119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 3456899999987654 2222222 7899999999887765443445678899999999999999988 679999999
Q ss_pred CEEEccCCCCCC---CccccCCCCCcEEEeccCcCCccch-------hhhcCCCcCEEecCCCCCCcccChHHHhcCccC
Q 002133 585 RTLSFDCCHLED---VARVGDLAKLEILSFRNSHIEQLPE-------QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRL 654 (961)
Q Consensus 585 ~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~-------~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L 654 (961)
++|.+.+-.+.. +..+.+|++|+.||+|......-+. .-..|++|+.||.++...-..+-...+..-++|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 999998887765 5788899999999999874443332 123588999999998432222222323344445
Q ss_pred CEEE
Q 002133 655 NELY 658 (961)
Q Consensus 655 ~~L~ 658 (961)
+.+.
T Consensus 278 ~~i~ 281 (699)
T KOG3665|consen 278 QQIA 281 (699)
T ss_pred hhhh
Confidence 4444
No 101
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=4.6e-07 Score=102.68 Aligned_cols=150 Identities=21% Similarity=0.310 Sum_probs=107.9
Q ss_pred CCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccC
Q 002133 513 NPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (961)
Q Consensus 513 ~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~ 591 (961)
.+..+++..|.+..+-... .+.+|..|++.+|.+.. +... +..+.+|++|++++|.|+.+.. +..+..|+.|++++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccc-hhhhhcchheeccccccccccc-hhhccchhhheecc
Confidence 3444556666666533323 77888889998888763 3221 3678899999999999887743 66777799999999
Q ss_pred CCCCCCccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 592 CHLEDVARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 592 ~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
|.++.+..+..+..|+.+++++|.+..+... ...+.+|+.+++.+ +.+..+.. +..+..+..+++..|.+..+.
T Consensus 150 N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 150 NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG-NSIREIEG--LDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC-Cchhcccc--hHHHHHHHHhhcccccceecc
Confidence 9999888888899999999999988877664 57888899998888 55555432 344455555566666555444
No 102
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.08 E-value=4.8e-05 Score=84.50 Aligned_cols=177 Identities=18% Similarity=0.211 Sum_probs=102.1
Q ss_pred CCccccCCchHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (961)
....++.|+++.+++|.+.+. . ...+-+.++|++|+|||++|+++++.... .| +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TF-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CE-----Eecch--
Confidence 345678899999988887763 1 12456899999999999999999987652 22 22211
Q ss_pred CHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc----------------cccccCCCCCCC
Q 002133 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----------------LDDIGIPFWDGE 279 (961)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~ 279 (961)
..+.... .+ ........+.+......+.+|++||++.... +..+...+
T Consensus 190 --~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l---- 253 (364)
T TIGR01242 190 --SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL---- 253 (364)
T ss_pred --HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh----
Confidence 1111111 11 1112233333333334568999999976411 00010000
Q ss_pred cccccCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 280 KQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 280 ~~~~~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
..+....+.+||.||.......... .-...+.+...+.++..++|..++.......+. -...+++.+.|..
T Consensus 254 -d~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 254 -DGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred -hCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 0011235678888887643321111 224578999999999999999887543322211 1356777777764
No 103
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.07 E-value=6.5e-05 Score=75.05 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=90.5
Q ss_pred HHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc--------------------CCCCEEEEEEec-CCCCHHHH
Q 002133 163 KMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE--------------------DLFDVVVDAEVT-HTPDWKEI 220 (961)
Q Consensus 163 ~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~-~~~~~~~~ 220 (961)
.+.+.+...++ ..+.++|+.|+||||+|+.+....-.. .+.|. .++... ..... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 34455555555 568899999999999999998886432 12222 222211 11111 11
Q ss_pred HHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecch
Q 002133 221 CGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ 298 (961)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~ 298 (961)
.+++.+.+.... ..+.+-++|+||+.... .++.+...+.. ....+.+|++|++.
T Consensus 81 i~~i~~~~~~~~-----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~-------~~~~~~~il~~~~~ 136 (188)
T TIGR00678 81 VRELVEFLSRTP-----------------QESGRRVVIIEDAERMNEAAANALLKTLEE-------PPPNTLFILITPSP 136 (188)
T ss_pred HHHHHHHHccCc-----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECCh
Confidence 222222221110 01356789999987652 23333222222 23345566666543
Q ss_pred -hhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHH
Q 002133 299 -HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (961)
Q Consensus 299 -~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 355 (961)
.+..........+++.+++.++..+.+.+. + .+ .+.+..|++.++|.|..
T Consensus 137 ~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 137 EKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C---CC---HHHHHHHHHHcCCCccc
Confidence 222211223458999999999988888776 2 11 35678999999998853
No 104
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=3.7e-05 Score=86.15 Aligned_cols=200 Identities=18% Similarity=0.177 Sum_probs=108.5
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE-ecCCCCHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE-VTHTPDWKEICGRIAD 226 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~ 226 (961)
....+++|.+..++.|..++...+++ .+.++|+.|+||||+|+.+++...-...++..-|.. .......-...+.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 44677899999999998888776664 488999999999999999998774322111111110 0000001111111111
Q ss_pred HhCCCc---cC-CCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEe-
Q 002133 227 QLGLEI---VR-PDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLAS- 295 (961)
Q Consensus 227 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTt- 295 (961)
....+. .. .....+.+..+.+.+. .+++-++|+|++.... .++.+...+.+ ..+.+.+|++|
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe-------p~~~t~~Il~t~ 165 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE-------PPPHAIFIFATT 165 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-------CCCCeEEEEEeC
Confidence 111100 00 0011122233334442 1355688999987653 34444333322 23455655554
Q ss_pred cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 296 RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 296 R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
+...+..........+++.++++++..+.+...+...... --.+.+..|++.++|.+--+
T Consensus 166 ~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~-i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 166 ELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS-VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred ChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 4333321111122478999999999988888776432211 11345778999999977533
No 105
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=9.9e-06 Score=87.25 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=65.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC--CCHHHHHHHHHHHhCCCccCCCCH------HHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT--PDWKEICGRIADQLGLEIVRPDSL------VEKAN 243 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~------~~~~~ 243 (961)
.-..++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+...+-....+.... ....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 44578999999999999999999988754 8999999999866 689999999854332211111111 11222
Q ss_pred HHHHHHHcCCcEEEEEcccccc
Q 002133 244 QLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 244 ~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
.......++++++|++|++..-
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 2333334589999999998654
No 106
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.05 E-value=0.00011 Score=75.83 Aligned_cols=170 Identities=14% Similarity=0.136 Sum_probs=99.0
Q ss_pred cccC-CchH-HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 002133 152 VHFP-SRNP-VFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLG 229 (961)
Q Consensus 152 ~~~~-gr~~-~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 229 (961)
+.|+ |.+. .+..+.++......+.+.|+|+.|+|||+|++.+++..... -..+.++++.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW------------- 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-------------
Confidence 3443 5333 44444444444555689999999999999999999877643 23456666543110
Q ss_pred CCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc---ccccc----ccCCCCCCCcccccCCCceEEEEEecchhhh-
Q 002133 230 LEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ---INLDD----IGIPFWDGEKQSVDNQGRWTLLLASRDQHVL- 301 (961)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~---~~~~~----l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~- 301 (961)
. ...+.+.+.+ --+|++||+... ..|+. +..... ..+..++|+||+...-.
T Consensus 87 -------~----~~~~~~~~~~--~dlliiDdi~~~~~~~~~~~~lf~l~n~~~--------e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 87 -------F----VPEVLEGMEQ--LSLVCIDNIECIAGDELWEMAIFDLYNRIL--------ESGRTRLLITGDRPPRQL 145 (235)
T ss_pred -------h----hHHHHHHhhh--CCEEEEeChhhhcCCHHHHHHHHHHHHHHH--------HcCCCeEEEeCCCChHHc
Confidence 0 0112222221 247899999654 23332 111111 12234688988854221
Q ss_pred -------hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHH
Q 002133 302 -------RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (961)
Q Consensus 302 -------~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 358 (961)
...+....+++++++++++-.+.+.+++.... -.--+++..-|++.+.|-.-++..
T Consensus 146 ~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 146 NLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred CcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHH
Confidence 12244557899999999999999988664321 112245667788888776655433
No 107
>PRK08727 hypothetical protein; Validated
Probab=98.04 E-value=6.6e-05 Score=77.45 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=97.5
Q ss_pred ccccCCch-HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 002133 151 YVHFPSRN-PVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLG 229 (961)
Q Consensus 151 ~~~~~gr~-~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 229 (961)
++.|++.. ..+..+.....+.....+.|+|..|+|||+|++++++....++ ..+.|+++.+ ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~--~~~~y~~~~~------~~~~~----- 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG--RSSAYLPLQA------AAGRL----- 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEeHHH------hhhhH-----
Confidence 44455433 3344433333333445699999999999999999998876442 3455665322 11111
Q ss_pred CCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc---cccccCCCCCCCcccccCCCceEEEEEecchhhh-----
Q 002133 230 LEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN---LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL----- 301 (961)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~----- 301 (961)
....+.+. +.-+||+||+..... |......+.+ .. ...|..||+|++...-.
T Consensus 85 -------------~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n----~~-~~~~~~vI~ts~~~p~~l~~~~ 144 (233)
T PRK08727 85 -------------RDALEALE--GRSLVALDGLESIAGQREDEVALFDFHN----RA-RAAGITLLYTARQMPDGLALVL 144 (233)
T ss_pred -------------HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHH----HH-HHcCCeEEEECCCChhhhhhhh
Confidence 11222332 346999999975432 2211111111 00 12356699999863221
Q ss_pred ---hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 302 ---RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 302 ---~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
...+.....+++++++.++-.+++.+++..... .--++...-|++.++|-.-++
T Consensus 145 ~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 145 PDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 112233468999999999999999987753211 112345677888887655444
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=7.2e-05 Score=86.08 Aligned_cols=200 Identities=16% Similarity=0.250 Sum_probs=109.6
Q ss_pred CCccccCCchHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
..+.+++|.+..++.|...+...+ ...+.++|+.|+||||+|+.+++..-.....+. ...+.-...+.|...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g 85 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQG 85 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcC
Confidence 446778899988888888887665 467788999999999999999987643211100 000000111111111
Q ss_pred hCCCccCC----CCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEEEecc
Q 002133 228 LGLEIVRP----DSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (961)
Q Consensus 228 l~~~~~~~----~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~ 297 (961)
...+.... ....+.+..+.+.+. .+++-+||+|++... ..++.+...+-. -.....+|++|..
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-------P~~~~ifILaTt~ 158 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-------PPARVTFVLATTE 158 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-------cCCCEEEEEecCC
Confidence 00000000 000111222222221 245678999999765 233344322211 1234455554444
Q ss_pred -hhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHh
Q 002133 298 -QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAVSTIANAL 363 (961)
Q Consensus 298 -~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~L 363 (961)
..+..........+++.+++.++....+...+......- -.+.++.|++.++|-+ .|+..+...+
T Consensus 159 ~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i-d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 159 PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY-DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444321122235789999999999988888765332111 1345678999999854 6777766544
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=9.2e-05 Score=86.10 Aligned_cols=198 Identities=13% Similarity=0.178 Sum_probs=110.4
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCC--EEEEEEecCCCCHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLFD--VVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~ 225 (961)
..+.+++|.+..++.|.+.+...+.. .+.++|+.|+||||+|+.+++..--..... ...+-.+. .-...+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg----~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG----VGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc----ccHHHHHHh
Confidence 45678999999999999998866644 688999999999999999998764221110 00000000 011112222
Q ss_pred HHhCCCccC----CCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEe
Q 002133 226 DQLGLEIVR----PDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLAS 295 (961)
Q Consensus 226 ~~l~~~~~~----~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTt 295 (961)
..-+.+... .....+.+..+.+.+. .+++-++|+|++.... ..+.+...+-+ -.+++.+|++|
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-------Pp~~~~fIl~t 169 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHVKFIFAT 169 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-------CCCCeEEEEEe
Confidence 211111000 0011122233333332 1345678999987653 23333222222 23455655544
Q ss_pred -cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHH
Q 002133 296 -RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (961)
Q Consensus 296 -R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 358 (961)
....+..........+++.+++.++....+.+.+.......+ .+....|++.++|.+.-+..
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~-~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE-DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 444443221223358999999999999999887753322111 24567889999998865533
No 110
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.00 E-value=1.7e-05 Score=80.41 Aligned_cols=187 Identities=18% Similarity=0.168 Sum_probs=116.6
Q ss_pred ccCCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEE-EEEecCCCCHHHHHHHH-
Q 002133 147 SVRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVV-DAEVTHTPDWKEICGRI- 224 (961)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i- 224 (961)
.+...++++|.+..+.-+.+.+.....++...+|++|.|||+-|..++...-..+.|.+++ -.++|......-+-.++
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik 110 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK 110 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc
Confidence 3455778899999999999998887788999999999999999999998875556666554 34555543322111111
Q ss_pred -HHHhCCCccCCCCHHHHHHHHHHHHH-cCCc-EEEEEcccccc--cccccccCCCCCCCcccccCCCceE-EEEEecch
Q 002133 225 -ADQLGLEIVRPDSLVEKANQLRQALK-KKKR-VLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWT-LLLASRDQ 298 (961)
Q Consensus 225 -~~~l~~~~~~~~~~~~~~~~l~~~l~-~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~-IlvTtR~~ 298 (961)
..++.... ..... .-++ -.+|||+++.. +.|.++....-+ ....++ |+||+--.
T Consensus 111 ~fakl~~~~-------------~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-------~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 111 NFAKLTVLL-------------KRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-------FSRTTRFILICNYLS 170 (346)
T ss_pred CHHHHhhcc-------------ccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-------cccceEEEEEcCChh
Confidence 00000000 00000 0123 46788999876 567776443332 234455 55555444
Q ss_pred hhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH
Q 002133 299 HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (961)
Q Consensus 299 ~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 354 (961)
.+.......-.-+..++|..++...-+..++..+..+-+. +..+.|++.++|---
T Consensus 171 rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~-~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 171 RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDD-DALKLIAKISDGDLR 225 (346)
T ss_pred hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHH
Confidence 4332222233468999999999999999988755444442 345789999988643
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=7.1e-05 Score=86.43 Aligned_cols=185 Identities=15% Similarity=0.216 Sum_probs=105.2
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKED-------------------LFDVVVD 208 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~w 208 (961)
..+.+++|.+..++.+..++...+.. .+.++|+.|+||||+|+.++....-.. .|.-.++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 34677899999999999998876654 568999999999999999988763211 0111222
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCC
Q 002133 209 AEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQ 286 (961)
Q Consensus 209 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~ 286 (961)
++.+....+.+ .++++....... ..+++-++|+|+++... ..+.+...+-. ..
T Consensus 93 i~~~~~~~vd~-ir~l~~~~~~~p-----------------~~~~~kVvIIDEad~ls~~a~naLLK~LEe-------pp 147 (527)
T PRK14969 93 VDAASNTQVDA-MRELLDNAQYAP-----------------TRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-------PP 147 (527)
T ss_pred eeccccCCHHH-HHHHHHHHhhCc-----------------ccCCceEEEEcCcccCCHHHHHHHHHHHhC-------CC
Confidence 22221111111 112222111000 01456789999997653 23333222222 22
Q ss_pred CceEEEEEecc-hhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH-HHHHH
Q 002133 287 GRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVSTI 359 (961)
Q Consensus 287 ~gs~IlvTtR~-~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 359 (961)
..+.+|++|.+ ..+..........+++++++.++..+.+.+.+..+....+ .+....|++.++|.+- |+..+
T Consensus 148 ~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~-~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 148 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD-ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 34555555543 3322110111257899999999998888877643222222 3445788999999774 44443
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00015 Score=80.97 Aligned_cols=181 Identities=14% Similarity=0.228 Sum_probs=102.5
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc------CCCCE-EEEEEecCCCCHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE------DLFDV-VVDAEVTHTPDWKEI 220 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~-~~wv~~~~~~~~~~~ 220 (961)
....+++|.+..++.+.+.+..... +.+.++|+.|+||||+|+.+.+..... ..|.. ++.++........+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 92 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD- 92 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-
Confidence 4467789999999999999876654 478899999999999999998876431 11211 11111111111111
Q ss_pred HHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEe-cc
Q 002133 221 CGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLAS-RD 297 (961)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTt-R~ 297 (961)
.+++++.+.... . .+++-++++|++.... .++.+...+.. ....+.+|++| ..
T Consensus 93 i~~l~~~~~~~p----------------~-~~~~kiviIDE~~~l~~~~~~~ll~~le~-------~~~~~~~Il~~~~~ 148 (367)
T PRK14970 93 IRNLIDQVRIPP----------------Q-TGKYKIYIIDEVHMLSSAAFNAFLKTLEE-------PPAHAIFILATTEK 148 (367)
T ss_pred HHHHHHHHhhcc----------------c-cCCcEEEEEeChhhcCHHHHHHHHHHHhC-------CCCceEEEEEeCCc
Confidence 122222211100 0 1245689999986542 23333221211 12344555554 33
Q ss_pred hhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHH
Q 002133 298 QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (961)
Q Consensus 298 ~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 355 (961)
..+..........++..++++++....+...+......- -.+....|++.++|-+-.
T Consensus 149 ~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i-~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 149 HKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF-EDDALHIIAQKADGALRD 205 (367)
T ss_pred ccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhCCCCHHH
Confidence 332211122335789999999999988888765322211 135677888889886643
No 113
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=5.7e-06 Score=59.55 Aligned_cols=37 Identities=32% Similarity=0.432 Sum_probs=19.0
Q ss_pred ceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC
Q 002133 560 ELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED 596 (961)
Q Consensus 560 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~ 596 (961)
+|++|++++|.++.+|..+++|++|++|++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555545555555555555555444
No 114
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=1.2e-06 Score=87.71 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=49.8
Q ss_pred hCCCceeEEEecCCCCC---CCCccccCCcCCCEEEccCCCCCC-Cccc-cCCCCCcEEEeccCcCC--ccchhhhcCCC
Q 002133 556 DGMTELLVLHLTGIHFP---SLPLSLGSLINLRTLSFDCCHLED-VARV-GDLAKLEILSFRNSHIE--QLPEQIGNLTR 628 (961)
Q Consensus 556 ~~l~~L~~L~L~~~~~~---~lp~~~~~l~~L~~L~L~~~~l~~-~~~~-~~l~~L~~L~l~~~~l~--~lp~~~~~l~~ 628 (961)
..++.++.|||.+|.++ .+-..+.+|++|++|+|+.|.+.. +..+ ..+.+|+.|-|.|+.+. .....+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 44566777777777665 233345567777777777777665 3444 35667777777776544 34444556666
Q ss_pred cCEEecCC
Q 002133 629 LKLLDLSN 636 (961)
Q Consensus 629 L~~L~l~~ 636 (961)
++.|+++.
T Consensus 148 vtelHmS~ 155 (418)
T KOG2982|consen 148 VTELHMSD 155 (418)
T ss_pred hhhhhhcc
Confidence 66666665
No 115
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=0.00069 Score=73.04 Aligned_cols=197 Identities=15% Similarity=0.158 Sum_probs=125.3
Q ss_pred CccccCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 150 GYVHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
.+...+||+.++..+-+++. .+...-+-|.|-+|.|||.+...++.+......--+++++++..-.....++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 45678899999998888876 34566788999999999999999998876533223567887776567778888887
Q ss_pred HHhCCCccCCCCHHHHHHHHHHHHHcCC-cEEEEEccccccccc--cccc-CCCCCCCcccccCCCceEEEEEecchhhh
Q 002133 226 DQLGLEIVRPDSLVEKANQLRQALKKKK-RVLVILDDIWTQINL--DDIG-IPFWDGEKQSVDNQGRWTLLLASRDQHVL 301 (961)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv~~~~~~--~~l~-~~~~~~~~~~~~~~~gs~IlvTtR~~~v~ 301 (961)
..+-..........+....+.+...+.+ .+++|+|.++....- ..+. ...|. .-+++|+|+.---...-
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp-------~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP-------KLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc-------cCCcceeeeeeehhhhh
Confidence 7662221222133556666666666544 799999998765210 1110 11122 45667766543222111
Q ss_pred ---------hh-cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 302 ---------RI-NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 302 ---------~~-~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
.. ..-....+..+|.+.++..+.+..+.............++-+++++.|.-
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc
Confidence 10 11234578899999999999999988654444444444455555554443
No 116
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.98 E-value=4.1e-05 Score=78.99 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=103.6
Q ss_pred ccccCCchHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 151 YVHFPSRNPVFQ---KMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 151 ~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
..++||.+..+. -|.+.+..+.+..+.+||++|+||||||+.+....+... +.||..|....-..-.++|.++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 455666655442 233344467888899999999999999999998876432 5678877665444444555543
Q ss_pred hCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEE--Eecchhhh--
Q 002133 228 LGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLL--ASRDQHVL-- 301 (961)
Q Consensus 228 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~Ilv--TtR~~~v~-- 301 (961)
-. .. ....++|..|.+|.|..- .+-+.+ .|. -.+|.-++| ||-+...-
T Consensus 213 aq--------------~~--~~l~krkTilFiDEiHRFNksQQD~f-LP~---------VE~G~I~lIGATTENPSFqln 266 (554)
T KOG2028|consen 213 AQ--------------NE--KSLTKRKTILFIDEIHRFNKSQQDTF-LPH---------VENGDITLIGATTENPSFQLN 266 (554)
T ss_pred HH--------------HH--HhhhcceeEEEeHHhhhhhhhhhhcc-cce---------eccCceEEEecccCCCccchh
Confidence 21 11 111257899999999653 232323 333 334665554 55554221
Q ss_pred hhcCCCCceEEccCCCHHHHHHHHHHHhC---CC------CCCCc---hhHHHHHHHHhhCCchH
Q 002133 302 RINMSNPRIFSISTLADGEAKSLFEKIVG---DS------AKESD---CRAIGVEIVGKCGGLPI 354 (961)
Q Consensus 302 ~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~---~~------~~~~~---~~~~~~~i~~~c~glPL 354 (961)
........++.+++|..++-..++.+... +. .+.+. -..+.+-++..|.|-.-
T Consensus 267 ~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 267 AALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11234446899999999999988887432 11 11111 12455566777777653
No 117
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00012 Score=88.00 Aligned_cols=177 Identities=14% Similarity=0.213 Sum_probs=105.7
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcC----------------------CCCE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKED----------------------LFDV 205 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------------~f~~ 205 (961)
..+.+++|.+..++.|..++...++. .+.++|+.|+||||+|+.+++...-.+ ++|
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d- 90 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD- 90 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-
Confidence 44678899999999999999876654 578999999999999999998874211 111
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHH----HcCCcEEEEEcccccc--cccccccCCCCCCC
Q 002133 206 VVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQAL----KKKKRVLVILDDIWTQ--INLDDIGIPFWDGE 279 (961)
Q Consensus 206 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~ 279 (961)
+++++......+. .+..+.+.+ ..+++-++|||+++.. ..++.|...+-+
T Consensus 91 v~eidaas~~~Vd----------------------~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE-- 146 (824)
T PRK07764 91 VTEIDAASHGGVD----------------------DARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE-- 146 (824)
T ss_pred EEEecccccCCHH----------------------HHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC--
Confidence 1222211111111 111222221 1235567889999765 333444333322
Q ss_pred cccccCCCceEEEEEe-cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 280 KQSVDNQGRWTLLLAS-RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 280 ~~~~~~~~gs~IlvTt-R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
-...+.+|++| ....+..........|++..++.++..+.+.+.+..+....+ .+....|++.++|-+..+
T Consensus 147 -----pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id-~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 147 -----PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE-PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred -----CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 23355555444 444443221233468999999999998888877643222211 234567899999987433
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00015 Score=84.44 Aligned_cols=202 Identities=19% Similarity=0.198 Sum_probs=108.0
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE-ecCCCCHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE-VTHTPDWKEICGRIAD 226 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~ 226 (961)
..+.+++|.+..+..|.+++..+++. .+.++|+.|+||||+|+.+++..--....+.-.|.. +......-...+.+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 44678899999999999988776654 588999999999999999998764322111001110 0000011111112211
Q ss_pred HhCCCcc---C-CCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEE-EEe
Q 002133 227 QLGLEIV---R-PDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLL-LAS 295 (961)
Q Consensus 227 ~l~~~~~---~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~Il-vTt 295 (961)
.-..+.. . .....+.+..+.+.+. .+++-++|+|+++... ..+.+...+-. -.+.+.+| +|+
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe-------Pp~~tv~IL~t~ 165 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE-------PPPHAIFIFATT 165 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-------CCCCeEEEEEeC
Confidence 1111000 0 0011122223333331 1355688999987652 23333222221 12344544 454
Q ss_pred cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH-HHHH
Q 002133 296 RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVST 358 (961)
Q Consensus 296 R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~ 358 (961)
+...+..........+++.+++.++....+.+.+......- -.+.+..|++.++|..- |+..
T Consensus 166 ~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I-~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 166 ELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI-DADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred ChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHH
Confidence 44444322233456899999999998888877664322111 13456789999999554 4443
No 119
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00018 Score=84.08 Aligned_cols=182 Identities=14% Similarity=0.213 Sum_probs=106.5
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC---E-------------EEEEEe
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFD---V-------------VVDAEV 211 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~-------------~~wv~~ 211 (961)
....+++|.+..++.+..++...++ +.+.++|+.|+||||+|+.++...-.....+ . ++++..
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieida 94 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDA 94 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEec
Confidence 4467889999999999999876664 4567999999999999999987753211100 0 011111
Q ss_pred cCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccC
Q 002133 212 THTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDN 285 (961)
Q Consensus 212 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~ 285 (961)
.... . .+.+..+.+.+. .+++-++|+|++... ..++.+...+-. .
T Consensus 95 asn~---------------------~-vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-------P 145 (725)
T PRK07133 95 ASNN---------------------G-VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-------P 145 (725)
T ss_pred cccC---------------------C-HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-------C
Confidence 1001 1 122233333332 145668899998754 234444322211 1
Q ss_pred CCceE-EEEEecchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH-HHHHHH
Q 002133 286 QGRWT-LLLASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVSTIA 360 (961)
Q Consensus 286 ~~gs~-IlvTtR~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~ 360 (961)
..... |++|++...+..........+++.+++.++....+...+.......+ .+.+..|++.++|-+. |+..+-
T Consensus 146 P~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id-~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE-KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 22344 55555555443222233458999999999998888876643222111 2346789999988664 444433
No 120
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.92 E-value=3.3e-07 Score=101.99 Aligned_cols=122 Identities=23% Similarity=0.294 Sum_probs=93.1
Q ss_pred ceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCCCccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCC
Q 002133 560 ELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCS 638 (961)
Q Consensus 560 ~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 638 (961)
.|.+.++++|.+..+-.++.-+++|+.|+|++|++++...+..|++|++|||++|.+..+|.- ...+. |+.|.+++ |
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-N 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-c
Confidence 567778888888877778888899999999999998888889999999999999988888763 33444 89999988 6
Q ss_pred CCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEcc
Q 002133 639 KLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 639 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
.++.+- .+.+|.+|+.|++++|.+.... .+.-+..|..|+.|.+.
T Consensus 243 ~l~tL~--gie~LksL~~LDlsyNll~~hs-----eL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 243 ALTTLR--GIENLKSLYGLDLSYNLLSEHS-----ELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred HHHhhh--hHHhhhhhhccchhHhhhhcch-----hhhHHHHHHHHHHHhhc
Confidence 777763 2788999999999988655433 23344455555666665
No 121
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.92 E-value=0.00011 Score=81.91 Aligned_cols=179 Identities=16% Similarity=0.207 Sum_probs=100.5
Q ss_pred CccccCCchHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 150 GYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
...++.|+++.++++.+.+. . ...+-|.++|++|+|||++|+++++.... . |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~--~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--T-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--C-----EEEeeh---
Confidence 35678899999888887653 1 23456899999999999999999987652 2 232221
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc------------cc-cccCCCCCCCcccc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------LD-DIGIPFWDGEKQSV 283 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------------~~-~l~~~~~~~~~~~~ 283 (961)
.++.... .+ ........+.+......+.+|+|||++.... .. .+...+.. ...+
T Consensus 199 -~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~--ld~~ 265 (389)
T PRK03992 199 -SELVQKF---IG-------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE--MDGF 265 (389)
T ss_pred -HHHhHhh---cc-------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHh--cccc
Confidence 1111111 11 1122333344443344678999999976410 00 01000000 0001
Q ss_pred cCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 284 DNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
....+..||.||.......... .-...+.+.+.+.++..++|+.++.......+.. ...+++.+.|.-
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~--~~~la~~t~g~s 337 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD--LEELAELTEGAS 337 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC--HHHHHHHcCCCC
Confidence 1234667888887644332111 1235789999999999999998875433222111 245666666653
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00017 Score=83.37 Aligned_cols=198 Identities=16% Similarity=0.206 Sum_probs=107.8
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
..+.+++|.+..++.|..++...++. .+.++|+.|+||||+|+.+++...-....+ +-.+... ...+.|...
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~~~ 82 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALAPN 82 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhhcc
Confidence 44678899999999999999876655 468999999999999999998754211110 0000000 001111100
Q ss_pred hC-------CCccCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEE-E
Q 002133 228 LG-------LEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLL-L 293 (961)
Q Consensus 228 l~-------~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~Il-v 293 (961)
-+ ++.... ...+.+..+.+... .+++-++|+|++... ...+.+...+.. -.....+| +
T Consensus 83 ~~~~~dvieidaas~-~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-------pp~~~~fIL~ 154 (584)
T PRK14952 83 GPGSIDVVELDAASH-GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-------PPEHLIFIFA 154 (584)
T ss_pred cCCCceEEEeccccc-cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-------CCCCeEEEEE
Confidence 00 000000 00111222222221 235568899998654 233333222222 22344544 5
Q ss_pred EecchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH-HHHHHHHH
Q 002133 294 ASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVSTIANA 362 (961)
Q Consensus 294 TtR~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~ 362 (961)
||....+...-......+++.+++.++..+.+.+.+.......+ .+....|++.++|-+- |+..+-.+
T Consensus 155 tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~-~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 155 TTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD-DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred eCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55544443221233468999999999998888877653322111 2455778899999774 44444443
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00027 Score=82.96 Aligned_cols=181 Identities=12% Similarity=0.197 Sum_probs=107.8
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhh---------------------cCCCCEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVK---------------------EDLFDVV 206 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~f~~~ 206 (961)
....+++|.+..++.|..++...... .+.++|+.|+||||+|+.++..... ..+|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~- 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI- 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-
Confidence 44678899999999999999876665 5789999999999999999887531 123432
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCccccc
Q 002133 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVD 284 (961)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 284 (961)
..++.+......++ ++++.++.... ..+++-++|+|++.... .++.+...+..
T Consensus 93 ~~ld~~~~~~vd~I-r~li~~~~~~P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEe------- 147 (614)
T PRK14971 93 HELDAASNNSVDDI-RNLIEQVRIPP-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEE------- 147 (614)
T ss_pred EEecccccCCHHHH-HHHHHHHhhCc-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhC-------
Confidence 22333222222222 22222221110 01345688999987652 34444332222
Q ss_pred CCCceEEEE-EecchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 285 NQGRWTLLL-ASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 285 ~~~gs~Ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
-..++.+|+ ||+...+.........++++.+++.++....+.+.+.......+ .+.+..|++.++|-.--+
T Consensus 148 pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~-~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 148 PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE-PEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 223455554 54444443222333468999999999999888887753322211 235678999999966433
No 124
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.90 E-value=0.00014 Score=88.75 Aligned_cols=182 Identities=15% Similarity=0.146 Sum_probs=102.2
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCEEEE-EEecCCCCHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVD-AEVTHTPDWKEICGR 223 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~ 223 (961)
...++++||++++.++++.|......-+.++|++|+||||+|..++++...... .+..+| ++.+.-..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------
Confidence 345788999999999999988766667789999999999999999998753211 122333 32221000
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHHH-cCCcEEEEEcccccccc------ccc---ccCCCCCCCcccccCCCceEEEE
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQALK-KKKRVLVILDDIWTQIN------LDD---IGIPFWDGEKQSVDNQGRWTLLL 293 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~------~~~---l~~~~~~~~~~~~~~~~gs~Ilv 293 (961)
+.. ... .....+..+.+.+. .+++.+|++|++..... -.+ +..|.- ..+.-++|-
T Consensus 257 -----g~~-~~g-e~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l--------~~G~l~~Ig 321 (852)
T TIGR03345 257 -----GAS-VKG-EFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL--------ARGELRTIA 321 (852)
T ss_pred -----ccc-cch-HHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh--------hCCCeEEEE
Confidence 000 000 11223333333332 24679999999876421 111 112211 233456666
Q ss_pred Eecchhhh------hhcCCCCceEEccCCCHHHHHHHHHHHhCC---CCCCCchhHHHHHHHHhhCCc
Q 002133 294 ASRDQHVL------RINMSNPRIFSISTLADGEAKSLFEKIVGD---SAKESDCRAIGVEIVGKCGGL 352 (961)
Q Consensus 294 TtR~~~v~------~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~---~~~~~~~~~~~~~i~~~c~gl 352 (961)
||...... .........+.+++++.+++.+++...... ...-.-..+....+++.+.+.
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 66653220 001123358999999999999997654421 111111233445666666544
No 125
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00032 Score=82.62 Aligned_cols=196 Identities=14% Similarity=0.203 Sum_probs=109.5
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
....+++|.+..++.|..++...++ ..+.++|+.|+||||+|+.+++......... -....+.-...+.+...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcC
Confidence 3467889999999999888876554 4568999999999999999998764211100 00011112233333322
Q ss_pred hCCCcc---C-CCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEEEecc
Q 002133 228 LGLEIV---R-PDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (961)
Q Consensus 228 l~~~~~---~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~ 297 (961)
.+.+.. . .....+.+..+.+.+. .+++-++|+|++... ...+.+...+-. ....+.+|++|.+
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-------pp~~tv~Il~t~~ 159 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHAIFILATTE 159 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-------CCCCeEEEEEeCC
Confidence 221110 0 0011122223333322 135678999998654 233333222222 2235556555543
Q ss_pred -hhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHH
Q 002133 298 -QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (961)
Q Consensus 298 -~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 358 (961)
..+..........+.+.+++.++....+.+.+.......+ .+.+..|++.++|.+..+..
T Consensus 160 ~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~-~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 160 VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE-PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 3332211223357889999999998888887753322111 34577899999998865543
No 126
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00028 Score=79.99 Aligned_cols=180 Identities=15% Similarity=0.228 Sum_probs=104.3
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC---------------------CCCEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED---------------------LFDVV 206 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~~~ 206 (961)
....+++|.+..+..+.+++...+. ..+.++|+.|+||||+|+.+++..-... +++ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 4467889999999999999876665 4678999999999999999988763211 122 1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCc
Q 002133 207 VDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEK 280 (961)
Q Consensus 207 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~ 280 (961)
+++.........+ +..+.+.+. .+++-++|+|++.... ..+.+...+-+
T Consensus 93 ~~i~g~~~~gid~----------------------ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe--- 147 (451)
T PRK06305 93 LEIDGASHRGIED----------------------IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE--- 147 (451)
T ss_pred EEeeccccCCHHH----------------------HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc---
Confidence 1121111111111 111222221 1356788999986542 22333222221
Q ss_pred ccccCCCceEEEEEecc-hhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch-HHHHH
Q 002133 281 QSVDNQGRWTLLLASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAVST 358 (961)
Q Consensus 281 ~~~~~~~gs~IlvTtR~-~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~ 358 (961)
...+..+|++|.. ..+..........+++.++++++....+.+.+......- -.+.+..|++.++|.+ .|+..
T Consensus 148 ----p~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i-~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 148 ----PPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET-SREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred ----CCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 2235556655533 322211122345799999999998888887664322111 2345678999999966 44444
Q ss_pred H
Q 002133 359 I 359 (961)
Q Consensus 359 ~ 359 (961)
+
T Consensus 223 L 223 (451)
T PRK06305 223 Y 223 (451)
T ss_pred H
Confidence 3
No 127
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.86 E-value=1.2e-05 Score=82.94 Aligned_cols=177 Identities=21% Similarity=0.242 Sum_probs=90.8
Q ss_pred CCCceeEEEeccCCCCCCCCh---hhhhCCCceeEEEecCCCCCCC--------------CccccCCcCCCEEEccCCCC
Q 002133 532 QCTRLKLFLLFTEDSSLQIPN---QFFDGMTELLVLHLTGIHFPSL--------------PLSLGSLINLRTLSFDCCHL 594 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~l--------------p~~~~~l~~L~~L~L~~~~l 594 (961)
.+++|++|+|+.|-+...-++ .+++++..|+.|.|.+|.+... ..-+..-+.||++....|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 455666666666655433222 2345566666666666655411 11233445666666666665
Q ss_pred CC-C-----ccccCCCCCcEEEeccCcCC--c---cchhhhcCCCcCEEecCCCCCCcccC----hHHHhcCccCCEEEc
Q 002133 595 ED-V-----ARVGDLAKLEILSFRNSHIE--Q---LPEQIGNLTRLKLLDLSNCSKLKVIK----PEVISRLSRLNELYM 659 (961)
Q Consensus 595 ~~-~-----~~~~~l~~L~~L~l~~~~l~--~---lp~~~~~l~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l 659 (961)
.+ . ..+...+.|+.+.+..|.|. . +-..+..+++|+.|||.+|. ++.-. ...+..+++|++|++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecc
Confidence 54 2 34555566666666666554 1 22345666667777776633 22211 112445666666666
Q ss_pred cCCCCccccCCCccchHhh-cCCCCCCEEEccCcc-----------hhccccccccccccceeE
Q 002133 660 GNSFTRKVEGQSNASVVEL-KQLSSLTILDMHIPD-----------AQLLLEDLISLDLERYRI 711 (961)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~-----------~~~~~~~L~~l~L~~~~i 711 (961)
++|.+.+-. ..+....+ ...++|..+.+.... .....+.|..|+|.+|++
T Consensus 249 ~dcll~~~G--a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEG--AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccc--HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666543211 01111222 224555665554221 122356677777777776
No 128
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00038 Score=79.32 Aligned_cols=184 Identities=14% Similarity=0.204 Sum_probs=107.1
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcC--------------------CCCEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKED--------------------LFDVVV 207 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~ 207 (961)
....+++|.+...+.+...+...+.. +..++|+.|+||||+|+.+++..-... |++ ++
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-II 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EE
Confidence 44678999999999999998766665 568999999999999999988753211 111 12
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccC
Q 002133 208 DAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDN 285 (961)
Q Consensus 208 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 285 (961)
+++.+....+..+ ++++....... ..+++-++|+|++.... ..+.+...+-. -
T Consensus 90 eldaas~~gId~I-Relie~~~~~P-----------------~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-------p 144 (535)
T PRK08451 90 EMDAASNRGIDDI-RELIEQTKYKP-----------------SMARFKIFIIDEVHMLTKEAFNALLKTLEE-------P 144 (535)
T ss_pred EeccccccCHHHH-HHHHHHHhhCc-----------------ccCCeEEEEEECcccCCHHHHHHHHHHHhh-------c
Confidence 2222211112221 11111110000 01355688999986652 23333222222 2
Q ss_pred CCceEEEEEecch-hhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 286 QGRWTLLLASRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 286 ~~gs~IlvTtR~~-~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
.+.+++|++|.+. .+...-......+++.+++.++....+.+.+....... -.+....|++.++|-+.-+...
T Consensus 145 p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 145 PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 3456666666553 22211122346899999999999888887765332222 1345678999999988544433
No 129
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00018 Score=81.55 Aligned_cols=168 Identities=15% Similarity=0.109 Sum_probs=102.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcC
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (961)
...+.|+|..|+|||+|++++++.......-..+++++ ..++...+...++.. .+....+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~-------~~~~~~~~~~~~-- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKT-------HKEIEQFKNEIC-- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHh-------hhHHHHHHHHhc--
Confidence 34688999999999999999999765432222345554 345666666655421 122344545444
Q ss_pred CcEEEEEccccccc---ccc-cccCCCCCCCcccccCCCceEEEEEecchhhh--------hhcCCCCceEEccCCCHHH
Q 002133 253 KRVLVILDDIWTQI---NLD-DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL--------RINMSNPRIFSISTLADGE 320 (961)
Q Consensus 253 kr~LlVlDdv~~~~---~~~-~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~--------~~~~~~~~~~~l~~L~~~~ 320 (961)
+.-+||+||+.... .+. .+..-+.. + ...|..||+|+....-. ...+...-+..+++++.++
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~-----~-~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNN-----F-IENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKT 279 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHH-----H-HHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHH
Confidence 34588999996542 111 11111100 0 12344688886643211 1123445678899999999
Q ss_pred HHHHHHHHhCCCCC-CCchhHHHHHHHHhhCCchHHHHHHHH
Q 002133 321 AKSLFEKIVGDSAK-ESDCRAIGVEIVGKCGGLPIAVSTIAN 361 (961)
Q Consensus 321 s~~Lf~~~~~~~~~-~~~~~~~~~~i~~~c~glPLai~~~~~ 361 (961)
-.+++.+++..... ..--+++..-|++.++|.|-.+.-+..
T Consensus 280 r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 280 ATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 99999998853221 122356778899999999987765554
No 130
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.82 E-value=0.00015 Score=79.28 Aligned_cols=149 Identities=10% Similarity=0.079 Sum_probs=84.7
Q ss_pred cCCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 148 VRGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
+....+++|.++..+.+..++...+. .++.++|++|+||||+|+.+++.... . ...++.+. .... ..++.+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~--~---~~~i~~~~-~~~~-~i~~~l~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA--E---VLFVNGSD-CRID-FVRNRLT 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc--c---ceEeccCc-ccHH-HHHHHHH
Confidence 45567889999999999999876554 46666999999999999999887531 1 23444443 1111 1111111
Q ss_pred HhCCCccCCCCHHHHHHHHHHHHH-cCCcEEEEEccccccc--cc-ccccCCCCCCCcccccCCCceEEEEEecchhhh-
Q 002133 227 QLGLEIVRPDSLVEKANQLRQALK-KKKRVLVILDDIWTQI--NL-DDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL- 301 (961)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~--~~-~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~- 301 (961)
.+ ..... .+.+-+||+||+.... .. ..+...+.. ...++++|+||......
T Consensus 90 ~~-----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-------~~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 90 RF-----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-------YSKNCSFIITANNKNGII 145 (316)
T ss_pred HH-----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-------cCCCceEEEEcCChhhch
Confidence 10 00000 1245678999997541 11 112111111 23567888888654322
Q ss_pred hhcCCCCceEEccCCCHHHHHHHHHH
Q 002133 302 RINMSNPRIFSISTLADGEAKSLFEK 327 (961)
Q Consensus 302 ~~~~~~~~~~~l~~L~~~~s~~Lf~~ 327 (961)
.........+.+...+.++..+++..
T Consensus 146 ~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 146 EPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 11112224677777788887766554
No 131
>PRK05642 DNA replication initiation factor; Validated
Probab=97.81 E-value=0.0003 Score=72.56 Aligned_cols=150 Identities=18% Similarity=0.232 Sum_probs=88.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (961)
..+.|+|..|+|||.|++++++....++ ..++|++..+ +... ...+.+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~~~------~~~~------------------~~~~~~~~~~~- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPLAE------LLDR------------------GPELLDNLEQY- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeHHH------HHhh------------------hHHHHHhhhhC-
Confidence 5789999999999999999998765432 3466776432 2111 01233444321
Q ss_pred cEEEEEcccccc---ccccc-ccCCCCCCCcccccCCCceEEEEEecchhhh--------hhcCCCCceEEccCCCHHHH
Q 002133 254 RVLVILDDIWTQ---INLDD-IGIPFWDGEKQSVDNQGRWTLLLASRDQHVL--------RINMSNPRIFSISTLADGEA 321 (961)
Q Consensus 254 r~LlVlDdv~~~---~~~~~-l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~--------~~~~~~~~~~~l~~L~~~~s 321 (961)
=+||+||+... ..|.. +...+.. + ...|.+||+|++..... ........++++++++.++-
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~-----~-~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~ 171 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNR-----L-RDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDK 171 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHH-----H-HhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHH
Confidence 36789999643 23332 2111100 0 12356788888754321 01123346789999999999
Q ss_pred HHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHH
Q 002133 322 KSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (961)
Q Consensus 322 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 358 (961)
.+.+++++..... .--+++..-|++.+.|-.-++..
T Consensus 172 ~~il~~ka~~~~~-~l~~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 172 LRALQLRASRRGL-HLTDEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHH
Confidence 9999866643211 11135667778877776655433
No 132
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.81 E-value=0.00017 Score=73.52 Aligned_cols=158 Identities=20% Similarity=0.197 Sum_probs=91.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcC
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (961)
...+.|+|..|+|||.|.+++++.......=..+++++ ..++...+...+.. .....+++.++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~---------~~~~~~~~~~~-- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD---------GEIEEFKDRLR-- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT---------TSHHHHHHHHC--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc---------ccchhhhhhhh--
Confidence 45689999999999999999999876543223466764 34555555554432 11234555554
Q ss_pred CcEEEEEcccccccc---ccc----ccCCCCCCCcccccCCCceEEEEEecchhhh--------hhcCCCCceEEccCCC
Q 002133 253 KRVLVILDDIWTQIN---LDD----IGIPFWDGEKQSVDNQGRWTLLLASRDQHVL--------RINMSNPRIFSISTLA 317 (961)
Q Consensus 253 kr~LlVlDdv~~~~~---~~~----l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~--------~~~~~~~~~~~l~~L~ 317 (961)
.-=+|++||++.... |.. +...+ ...|-+||+|++..... ...+....++++++.+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~---------~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRL---------IESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHH---------HHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHH---------HhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCC
Confidence 345889999976522 221 11111 12456899999654221 1123445689999999
Q ss_pred HHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHH
Q 002133 318 DGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVS 357 (961)
Q Consensus 318 ~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 357 (961)
.++-.+++.+.+...... --+++++-|++.+.+..-.+.
T Consensus 168 ~~~r~~il~~~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 168 DEDRRRILQKKAKERGIE-LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHHHHHHHTT---S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CcHHHHHHHHHhhcCCHHHHH
Confidence 999999999887522211 123456667776665554443
No 133
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=2e-06 Score=76.24 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=76.2
Q ss_pred CCCcEEecCCCCCCCCCCcc----CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEE
Q 002133 512 KNPTAISIPFRDISELPDSL----QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTL 587 (961)
Q Consensus 512 ~~l~~L~l~~~~~~~lp~~~----~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L 587 (961)
+....++++.+.+..+++.. ....|...++++|.+. ..|+.+-..++.++.|++++|.+..+|..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 34556677777666555432 5566777777777775 667666666777777778877777777777777777777
Q ss_pred EccCCCCCC-CccccCCCCCcEEEeccCcCCccchh
Q 002133 588 SFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQ 622 (961)
Q Consensus 588 ~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~ 622 (961)
+++.|.+.. |..+..|.+|-+|+..+|.+..+|-.
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 777777665 66666677777777777766666654
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00052 Score=80.58 Aligned_cols=198 Identities=13% Similarity=0.174 Sum_probs=108.6
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
.....++|.+.....|..++...+. +.+.++|+.|+||||+|+.+++......... .. ......-...+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PT----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CC----CCCCcccHHHHHHhcC
Confidence 4467789999999999998876554 5778999999999999999998864321110 00 0011111222333222
Q ss_pred hCCCcc---C-CCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEE-Eec
Q 002133 228 LGLEIV---R-PDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLL-ASR 296 (961)
Q Consensus 228 l~~~~~---~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~Ilv-TtR 296 (961)
.+.+.. . .....+.+.++.+... .+++-++|+|+++.. ..++.+...+-. -.....+|+ |+.
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-------Pp~~tvfIL~t~~ 160 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-------PPPRVVFVLATTD 160 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-------CCcCeEEEEEeCC
Confidence 211100 0 0011122233333222 135568899999765 234444322222 223444444 443
Q ss_pred chhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 297 DQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 297 ~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
...+...-......+++..++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is-~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE-PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 33332211223457888999999988888777653222111 245678999999987655433
No 135
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00055 Score=78.06 Aligned_cols=181 Identities=14% Similarity=0.179 Sum_probs=104.0
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEE
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKED-------------------LFDVVVD 208 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~w 208 (961)
....+++|.+.....+.+++...+.. ...++|+.|+||||+|+.++....... .|...++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 44677899999999999999766554 467899999999999999988753110 0111222
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCccc
Q 002133 209 AEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQS 282 (961)
Q Consensus 209 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~ 282 (961)
++.+..... +.+..+.+... .+++-++|+|+++... ..+.+...+..
T Consensus 93 idaas~~gv----------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe----- 145 (486)
T PRK14953 93 IDAASNRGI----------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE----- 145 (486)
T ss_pred EeCccCCCH----------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-----
Confidence 222111111 11222222221 1456789999987542 23333222221
Q ss_pred ccCCCceEEEE-EecchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 283 VDNQGRWTLLL-ASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 283 ~~~~~gs~Ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
..+...+|+ ||+...+..........+.+.+++.++....+.+++....... -.+....|++.++|.+..+...
T Consensus 146 --pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i-d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 146 --PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY-EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred --CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 122444444 4444333221122335789999999999888887764322211 1245677888999977544333
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.80 E-value=0.00024 Score=86.17 Aligned_cols=159 Identities=14% Similarity=0.194 Sum_probs=92.5
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCEEEEEEecCCCCHHHHHHHHH
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
..++++||+++++++++.|......-+.++|++|+|||++|+.+++......- .+..+|.- +...+....
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~a~~- 253 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLLAGT- 253 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHhhhc-
Confidence 45688999999999999998666666789999999999999999998754221 12334321 111111000
Q ss_pred HHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc----------cccccCCCCCCCcccccCCCceEEEEEe
Q 002133 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----------LDDIGIPFWDGEKQSVDNQGRWTLLLAS 295 (961)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------~~~l~~~~~~~~~~~~~~~~gs~IlvTt 295 (961)
...| .....+..+.+.+...++.+|++|++..... ...+..+. + ..+.-++|-+|
T Consensus 254 ~~~g-------~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~-------l-~~g~i~~IgaT 318 (731)
T TIGR02639 254 KYRG-------DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPA-------L-SSGKLRCIGST 318 (731)
T ss_pred cccc-------hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHH-------H-hCCCeEEEEec
Confidence 0000 2333444555554444578999999874421 01111111 1 12234455555
Q ss_pred cchhh----h--hhcCCCCceEEccCCCHHHHHHHHHHHh
Q 002133 296 RDQHV----L--RINMSNPRIFSISTLADGEAKSLFEKIV 329 (961)
Q Consensus 296 R~~~v----~--~~~~~~~~~~~l~~L~~~~s~~Lf~~~~ 329 (961)
..... . .........+.++.++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 43211 0 0011123478999999999999998654
No 137
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.79 E-value=0.00043 Score=78.45 Aligned_cols=164 Identities=16% Similarity=0.208 Sum_probs=92.0
Q ss_pred CCccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC---CCEEEEEEec
Q 002133 149 RGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL---FDVVVDAEVT 212 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~ 212 (961)
....++.|.+..+++|.+.+. -...+-+.++|++|+|||++|+++++....... .....|+++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 345667789988888877653 123455889999999999999999998753211 1233445444
Q ss_pred CCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHH----HHcCCcEEEEEcccccccc---------c-----ccccCC
Q 002133 213 HTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQA----LKKKKRVLVILDDIWTQIN---------L-----DDIGIP 274 (961)
Q Consensus 213 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~kr~LlVlDdv~~~~~---------~-----~~l~~~ 274 (961)
.. +++... .+ .....+..+.+. ...+++++|+||+++.... . ..+...
T Consensus 259 ~~----eLl~ky---vG-------ete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 259 GP----ELLNKY---VG-------ETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred ch----hhcccc---cc-------hHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 32 111110 00 111122222222 2234689999999975411 0 011000
Q ss_pred CCCCCcccccCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCC
Q 002133 275 FWDGEKQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGD 331 (961)
Q Consensus 275 ~~~~~~~~~~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~ 331 (961)
+ + .+....+..||.||.......... .-...+++...+.++..++|..+...
T Consensus 325 L-D----gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 L-D----GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred h-c----ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 0 0 111234555666665544332212 22346899999999999999998754
No 138
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.78 E-value=0.00025 Score=73.26 Aligned_cols=174 Identities=11% Similarity=0.110 Sum_probs=95.4
Q ss_pred ccccC-CchHHH-HHHHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 151 YVHFP-SRNPVF-QKMMESLR-DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 151 ~~~~~-gr~~~~-~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
.+.|+ |++... ..+.++.. ....+.+.|+|..|+|||+||+.+++....++ . ...+++..... . .+
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~-~~~~i~~~~~~---~---~~--- 85 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG-R-NARYLDAASPL---L---AF--- 85 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-C-cEEEEehHHhH---H---HH---
Confidence 34444 554443 33433333 23456789999999999999999998764322 2 33455443321 0 00
Q ss_pred hCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccc--cccCCCCCCCcccccCCCce-EEEEEecchhhhh--
Q 002133 228 LGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD--DIGIPFWDGEKQSVDNQGRW-TLLLASRDQHVLR-- 302 (961)
Q Consensus 228 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~--~l~~~~~~~~~~~~~~~~gs-~IlvTtR~~~v~~-- 302 (961)
.... +.-+||+||+.....+. .+...+.. . ...+. .||+|++......
T Consensus 86 -------------------~~~~--~~~~liiDdi~~l~~~~~~~L~~~~~~-----~-~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 86 -------------------DFDP--EAELYAVDDVERLDDAQQIALFNLFNR-----V-RAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred -------------------hhcc--cCCEEEEeChhhcCchHHHHHHHHHHH-----H-HHcCCcEEEEeCCCCHHhCCC
Confidence 0111 23478899997543221 11111100 0 12233 4666666432211
Q ss_pred -----hcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHh
Q 002133 303 -----INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (961)
Q Consensus 303 -----~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 363 (961)
..+.....+++.++++++-..++.+.+...... --++..+.+++.+.|.+..+..+-..+
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~-l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ-LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 012234688999999988777777654322211 123566788888999998876666544
No 139
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.76 E-value=0.0003 Score=86.36 Aligned_cols=158 Identities=17% Similarity=0.230 Sum_probs=92.8
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCEEEEEEecCCCCHHHHHHHHH
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
..++++||+++++++++.|......-+.++|++|+|||++|..++.......- -+..+|. + +...++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a--- 248 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA--- 248 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc---
Confidence 34678999999999999998666666789999999999999999998753211 1234443 1 1111111
Q ss_pred HHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc---------ccccCCCCCCCcccccCCCceEEEEEec
Q 002133 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL---------DDIGIPFWDGEKQSVDNQGRWTLLLASR 296 (961)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~---------~~l~~~~~~~~~~~~~~~~gs~IlvTtR 296 (961)
|... .. ...+.+..+.+.+...++.+|++|++.....- ..+..|. + ..+.-++|.+|.
T Consensus 249 ---g~~~-~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~-------l-~rg~l~~IgaTt 315 (821)
T CHL00095 249 ---GTKY-RG-EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPA-------L-ARGELQCIGATT 315 (821)
T ss_pred ---cCCC-cc-HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHH-------H-hCCCcEEEEeCC
Confidence 1111 11 23344455555555456799999999643210 1111111 1 123345555555
Q ss_pred chhhh------hhcCCCCceEEccCCCHHHHHHHHHHH
Q 002133 297 DQHVL------RINMSNPRIFSISTLADGEAKSLFEKI 328 (961)
Q Consensus 297 ~~~v~------~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 328 (961)
..... .........+.+...+.++...++...
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 44321 111223346788889999988887753
No 140
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.8e-05 Score=93.54 Aligned_cols=130 Identities=22% Similarity=0.241 Sum_probs=94.9
Q ss_pred CCceeEEEeccCCC-CCCCChhhhhCCCceeEEEecCCCCC--CCCccccCCcCCCEEEccCCCCCCCccccCCCCCcEE
Q 002133 533 CTRLKLFLLFTEDS-SLQIPNQFFDGMTELLVLHLTGIHFP--SLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEIL 609 (961)
Q Consensus 533 ~~~L~~L~l~~n~~-~~~~~~~~~~~l~~L~~L~L~~~~~~--~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L 609 (961)
-.+|+.|++++... ....|..+...+|+|+.|.+++-.+. .+-....++++|+.||+++++++.+..+++|++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 46788999988653 33455666677899999999987664 3334456789999999999999999999999999999
Q ss_pred EeccCcCCccc--hhhhcCCCcCEEecCCCCCCcccChH------HHhcCccCCEEEccCCC
Q 002133 610 SFRNSHIEQLP--EQIGNLTRLKLLDLSNCSKLKVIKPE------VISRLSRLNELYMGNSF 663 (961)
Q Consensus 610 ~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~~------~l~~l~~L~~L~l~~~~ 663 (961)
.+.+=.+..-+ ..+.+|++|+.||+|.. .....+.- .-..||+|+.|+.++..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~-~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD-KNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccc-ccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 88886666432 34778999999999983 33332210 01358888888887653
No 141
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=6.1e-07 Score=99.97 Aligned_cols=124 Identities=16% Similarity=0.161 Sum_probs=97.4
Q ss_pred hcCCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCcc-ccCCcCCCEE
Q 002133 510 ARKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTL 587 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L 587 (961)
.+.++...++++|.+..+..++ -++.|+.|+|++|.+.. +. .+..|++|++|||++|.+..+|.. ...+. |+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hH--HHHhcccccccccccchhccccccchhhhh-heee
Confidence 3567788888888887777766 67889999999998863 22 457899999999999999888753 22343 9999
Q ss_pred EccCCCCCCCccccCCCCCcEEEeccCcCCccch--hhhcCCCcCEEecCCC
Q 002133 588 SFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPE--QIGNLTRLKLLDLSNC 637 (961)
Q Consensus 588 ~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~ 637 (961)
.+++|.++.+..+.+|.+|+.||+++|-|..... -++.|..|+.|.|.+|
T Consensus 238 ~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 238 NLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred eecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 9999999888889999999999999986663321 2677888888999884
No 142
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=3.6e-05 Score=55.37 Aligned_cols=32 Identities=44% Similarity=0.698 Sum_probs=15.4
Q ss_pred CCcEEEeccCcCCccchhhhcCCCcCEEecCC
Q 002133 605 KLEILSFRNSHIEQLPEQIGNLTRLKLLDLSN 636 (961)
Q Consensus 605 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 636 (961)
+|++|++++|+|+.+|..+++|++|+.|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 44555555555555554455555555555555
No 143
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.74 E-value=0.00035 Score=73.24 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=104.9
Q ss_pred cccCCchHHHHHHHHHhccCCc---cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 002133 152 VHFPSRNPVFQKMMESLRDSNV---NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL 228 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~~~---~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 228 (961)
..|.+|+.++..+...+.+... +.|-|+|-.|.|||.+.+++.+.... + .+|+++-+.++.+.++.+|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~--~---~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL--E---NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC--c---ceeeehHHhccHHHHHHHHHHHh
Confidence 3467999999999988875433 34588999999999999999988742 2 47999999999999999999998
Q ss_pred CC-CccCCC--CHHHH----HHHHHHHH--Hc-CCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecch
Q 002133 229 GL-EIVRPD--SLVEK----ANQLRQAL--KK-KKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ 298 (961)
Q Consensus 229 ~~-~~~~~~--~~~~~----~~~l~~~l--~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~ 298 (961)
+. +..+.. ...+. +..+.++- .+ ++.++||||+++...+.+....+.-. ..+.+.+.+.. .|+++-..
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~-~L~el~~~~~i-~iils~~~ 158 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLF-RLYELLNEPTI-VIILSAPS 158 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHH-HHHHHhCCCce-EEEEeccc
Confidence 62 222211 11122 22222211 11 35799999999887655543211100 00111133433 33343332
Q ss_pred hhhhh----cCCCCceEEccCCCHHHHHHHHHHH
Q 002133 299 HVLRI----NMSNPRIFSISTLADGEAKSLFEKI 328 (961)
Q Consensus 299 ~v~~~----~~~~~~~~~l~~L~~~~s~~Lf~~~ 328 (961)
....+ +.....++.....+.+|..+++.+.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22211 2223346777888999988888653
No 144
>PF14516 AAA_35: AAA-like domain
Probab=97.72 E-value=0.0024 Score=69.61 Aligned_cols=210 Identities=14% Similarity=0.164 Sum_probs=120.7
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-----CCHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-----PDWKEICGR 223 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~ 223 (961)
.+..-++.|...-+++.+.+.+. -..+.|.|+-.+|||+|...+.+..... .+ .++++++..- .+..++++.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHH
Confidence 34556789987777777777543 3578999999999999999999888754 34 3457776542 245555544
Q ss_pred H----HHHhCCCccC-------CCCHHHHHHHHHHHHH-c-CCcEEEEEccccccccccc----ccCC--CCCCCccccc
Q 002133 224 I----ADQLGLEIVR-------PDSLVEKANQLRQALK-K-KKRVLVILDDIWTQINLDD----IGIP--FWDGEKQSVD 284 (961)
Q Consensus 224 i----~~~l~~~~~~-------~~~~~~~~~~l~~~l~-~-~kr~LlVlDdv~~~~~~~~----l~~~--~~~~~~~~~~ 284 (961)
+ .++++.+..- .........-+.+.+. . +++.+|+||+|+....... +... .|......-+
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 4 4555544210 0122222333444432 2 5789999999976532111 1000 0000000000
Q ss_pred CCCceEEEEEecc-hhhh----hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 285 NQGRWTLLLASRD-QHVL----RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 285 ~~~gs~IlvTtR~-~~v~----~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
.-..-++++.... .... .........++|++++.+|...|..++-.. .. ....++|....||+|.-+..+
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~---~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FS---QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CC---HHHHHHHHHHHCCCHHHHHHH
Confidence 0011122222111 1111 011223347899999999999999876422 11 122789999999999999999
Q ss_pred HHHhccC
Q 002133 360 ANALKGQ 366 (961)
Q Consensus 360 ~~~L~~~ 366 (961)
+..+...
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9988753
No 145
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.72 E-value=0.00016 Score=79.52 Aligned_cols=110 Identities=20% Similarity=0.209 Sum_probs=72.8
Q ss_pred ccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 002133 151 YVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGL 230 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 230 (961)
..++++.++.++.+...|.. .+.+.++|++|+|||++|+++++......+|+.+.||.+++..+..+++.-+.-. +.
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 34567888899999988864 3468889999999999999999988665678888999999988877765422100 11
Q ss_pred CccCCCCHHHHHHHHHHHHHc-CCcEEEEEcccccc
Q 002133 231 EIVRPDSLVEKANQLRQALKK-KKRVLVILDDIWTQ 265 (961)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~ 265 (961)
....... -..+.+...... .+++++|+|++...
T Consensus 251 gy~~~~G--~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 251 GFRRKDG--IFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CeEecCc--hHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 1000000 011111221111 36799999999765
No 146
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=6.5e-05 Score=81.52 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=55.2
Q ss_pred hccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceecccccccccccccccccccc
Q 002133 747 LKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTE 826 (961)
Q Consensus 747 l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 826 (961)
+++++.|++++| .+..+| .+ .++|+.|.+++|..++.++.. ..++|+.|.+++|.++..++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP-~L-----P~sLtsL~Lsnc~nLtsLP~~----LP~nLe~L~Ls~Cs~L~sLP-------- 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP-VL-----PNELTEITIENCNNLTTLPGS----IPEGLEKLTVCHCPEISGLP-------- 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccC-CC-----CCCCcEEEccCCCCcccCCch----hhhhhhheEccCcccccccc--------
Confidence 488999999998 555555 22 247999999999888777642 24689999999987776542
Q ss_pred CcCcCCCccEEEeec--CCCCcccC
Q 002133 827 DNRSFTNLRIINIEQ--CHRLKHLF 849 (961)
Q Consensus 827 ~~~~l~~L~~L~l~~--c~~L~~l~ 849 (961)
++|+.|.+.. |..+..+|
T Consensus 112 -----~sLe~L~L~~n~~~~L~~LP 131 (426)
T PRK15386 112 -----ESVRSLEIKGSATDSIKNVP 131 (426)
T ss_pred -----cccceEEeCCCCCcccccCc
Confidence 3577777654 33455554
No 147
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.71 E-value=0.00031 Score=74.07 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=68.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcC
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (961)
...+.++|++|+||||+|+.+++.....+.-....++.++. .++.... .+ ... ..+.+.+...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l~~~~---~g-------~~~---~~~~~~~~~a 104 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADLVGEY---IG-------HTA---QKTREVIKKA 104 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHhhhhh---cc-------chH---HHHHHHHHhc
Confidence 44678999999999999999998754222111112333322 1121111 01 001 1222333222
Q ss_pred CcEEEEEccccccc----------ccccccCCCCCCCcccccCCCceEEEEEecchhhh-------hhcCCCCceEEccC
Q 002133 253 KRVLVILDDIWTQI----------NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-------RINMSNPRIFSIST 315 (961)
Q Consensus 253 kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~-------~~~~~~~~~~~l~~ 315 (961)
...+|++|++.... ..+.+.....+ ......+++++...... .....-...+.+++
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~-------~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~ 177 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED-------NRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPD 177 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhc-------cCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECC
Confidence 33588999997532 11222111111 22333455555433220 00011134689999
Q ss_pred CCHHHHHHHHHHHhC
Q 002133 316 LADGEAKSLFEKIVG 330 (961)
Q Consensus 316 L~~~~s~~Lf~~~~~ 330 (961)
++.++-.+++.+.+.
T Consensus 178 ~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 178 YTVEELMEIAERMVK 192 (261)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988774
No 148
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.00079 Score=78.10 Aligned_cols=193 Identities=13% Similarity=0.136 Sum_probs=105.6
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
....+++|.+..+..+..++...+.. .+.++|+.|+||||+|+.+++..-.....+. ..+....+- ++|...
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~ 85 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDND 85 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcC
Confidence 45678999999999999999866654 5789999999999999999987642211100 000000001 111110
Q ss_pred hCCC---ccCC-CCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEec-
Q 002133 228 LGLE---IVRP-DSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASR- 296 (961)
Q Consensus 228 l~~~---~~~~-~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR- 296 (961)
-..+ ..+. ....+.+..+.+.+. .+++-++|+|++.... .++.+...+.. ..+...+|++|.
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-------pp~~~vfI~~tte 158 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-------PPPYIVFIFATTE 158 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-------CCCCEEEEEecCC
Confidence 0000 0000 011111222222111 2356688999987653 34444333322 234555555553
Q ss_pred chhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 297 DQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 297 ~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
...+..........+++.+++.++..+.+.+.+......- -.+.+..|++.++|.+..+
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i-d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY-EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 3333221122335789999999998888887764322221 2345677899999977544
No 149
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.68 E-value=5.1e-05 Score=72.28 Aligned_cols=101 Identities=21% Similarity=0.293 Sum_probs=57.6
Q ss_pred CCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCcccc-CCcCCCEEEccCCCCCC---CccccCCCCCcE
Q 002133 533 CTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLG-SLINLRTLSFDCCHLED---VARVGDLAKLEI 608 (961)
Q Consensus 533 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~-~l~~L~~L~L~~~~l~~---~~~~~~l~~L~~ 608 (961)
..+...++|.+|.+. .++. |..++.|.+|.|++|.|+.+-..+. .+++|..|.|.+|+|.. +..+..++.|++
T Consensus 41 ~d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 344555666666653 2221 3556666777777777666633333 34567777777766554 355566666777
Q ss_pred EEeccCcCCccch----hhhcCCCcCEEecCC
Q 002133 609 LSFRNSHIEQLPE----QIGNLTRLKLLDLSN 636 (961)
Q Consensus 609 L~l~~~~l~~lp~----~~~~l~~L~~L~l~~ 636 (961)
|.+-+|.++.-+. .+..+++|++||...
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7666666554432 144556666666544
No 150
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0005 Score=80.54 Aligned_cols=198 Identities=14% Similarity=0.198 Sum_probs=106.2
Q ss_pred CCccccCCchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
..+.+++|.+.....|.+++...++. .+.++|+.|+||||+|+.+++..-.....+. ...+.-...++|...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g 85 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEG 85 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcC
Confidence 45678999999999999998776654 5689999999999999999887532211100 000000111111110
Q ss_pred hCCCc---cCC-CCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEE-EEec
Q 002133 228 LGLEI---VRP-DSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLL-LASR 296 (961)
Q Consensus 228 l~~~~---~~~-~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~Il-vTtR 296 (961)
-..+. ... ....+.+..+.+.+. .+++-++|+|++.... ..+.+...+-+ -...+.+| +||.
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-------pp~~~~fIl~t~~ 158 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-------PPPHVKFIFATTE 158 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-------CCCCeEEEEEeCC
Confidence 00000 000 000111222333222 1345678999987652 23333222211 12345554 4555
Q ss_pred chhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch-HHHHHHHH
Q 002133 297 DQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP-IAVSTIAN 361 (961)
Q Consensus 297 ~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~ 361 (961)
...+..........+++.+++.++....+...+.......+ .+....|++.++|-. .|+..+-.
T Consensus 159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~-~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 159 PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS-DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44443222223457889999999988888776643322222 244667888998865 45554433
No 151
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.0011 Score=77.43 Aligned_cols=193 Identities=13% Similarity=0.180 Sum_probs=104.5
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
..+.+++|++...+.+.+++...+. +.+.++|+.|+||||+|+.+++..-....-+. ...+.-...+.+...
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~g 85 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITNG 85 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhcC
Confidence 4467899999999999999876554 45678999999999999999877532211000 000000111111111
Q ss_pred hCCCccCC----CCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceE-EEEEec
Q 002133 228 LGLEIVRP----DSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWT-LLLASR 296 (961)
Q Consensus 228 l~~~~~~~----~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~-IlvTtR 296 (961)
...+.... ....+.+..+.+... .+++-++|+|++... ..++.+...+-. ...... |++||.
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-------pp~~~ifIlatt~ 158 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-------PPAHVIFILATTE 158 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-------CCCCeEEEEEeCC
Confidence 11100000 011122223333222 235668899998754 234444322221 122344 444554
Q ss_pred chhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 297 DQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 297 ~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
...+...-......+++.+++.++....+...+.......+ .+....|++.++|-+..+
T Consensus 159 ~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 159 PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRDA 217 (559)
T ss_pred hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 44433221223457889999999988888877643222112 345678888888877543
No 152
>CHL00181 cbbX CbbX; Provisional
Probab=97.67 E-value=0.00095 Score=70.88 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCc
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKR 254 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr 254 (961)
.+.++|++|+||||+|+.+++.....+.-...-|+.++. .++.... .+. ... ...+.+.....
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~------~~~----~~~~~l~~a~g 123 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGH------TAP----KTKEVLKKAMG 123 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hcc------chH----HHHHHHHHccC
Confidence 478999999999999999988764322211112444442 2222221 111 111 11222222233
Q ss_pred EEEEEccccccc-----------ccccccCCCCCCCcccccCCCceEEEEEecchhhhh-------hcCCCCceEEccCC
Q 002133 255 VLVILDDIWTQI-----------NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLR-------INMSNPRIFSISTL 316 (961)
Q Consensus 255 ~LlVlDdv~~~~-----------~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~-------~~~~~~~~~~l~~L 316 (961)
-+|++|++.... ..+.+...+.+ ...+.+||+++....... ....-...+.++++
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~-------~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN-------QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCc
Confidence 588999986521 11111111111 334567777776433211 11123457999999
Q ss_pred CHHHHHHHHHHHhC
Q 002133 317 ADGEAKSLFEKIVG 330 (961)
Q Consensus 317 ~~~~s~~Lf~~~~~ 330 (961)
+.++..+++...+.
T Consensus 197 t~~el~~I~~~~l~ 210 (287)
T CHL00181 197 TPEELLQIAKIMLE 210 (287)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888774
No 153
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.66 E-value=0.00062 Score=72.40 Aligned_cols=132 Identities=13% Similarity=0.181 Sum_probs=71.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCc
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKR 254 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr 254 (961)
-+.++|++|+|||++|+.++............-|+.++. .++...+ .+. +.. .+.+.+.+-..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~~---~g~------~~~----~~~~~~~~a~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQY---IGH------TAP----KTKEILKRAMG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHhh---ccc------chH----HHHHHHHHccC
Confidence 578999999999999999888765433222222444442 1222111 111 111 12222322234
Q ss_pred EEEEEcccccc-----------cccccccCCCCCCCcccccCCCceEEEEEecchhhhhh-c------CCCCceEEccCC
Q 002133 255 VLVILDDIWTQ-----------INLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRI-N------MSNPRIFSISTL 316 (961)
Q Consensus 255 ~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~~-~------~~~~~~~~l~~L 316 (961)
-+|+||++... +.++.+...+.. ...+.+||+++........ . ..-...++++++
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~-------~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l 195 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN-------QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDY 195 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCc
Confidence 68899998632 111112111111 3345677777654322111 0 111357899999
Q ss_pred CHHHHHHHHHHHhC
Q 002133 317 ADGEAKSLFEKIVG 330 (961)
Q Consensus 317 ~~~~s~~Lf~~~~~ 330 (961)
+.+|-.+++...+.
T Consensus 196 ~~edl~~I~~~~l~ 209 (284)
T TIGR02880 196 SEAELLVIAGLMLK 209 (284)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 154
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.61 E-value=0.0012 Score=73.84 Aligned_cols=181 Identities=18% Similarity=0.236 Sum_probs=98.3
Q ss_pred CCccccCCchHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (961)
....++.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+++++... ..| +.+..+.
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f---i~V~~se-- 252 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF---LRVVGSE-- 252 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE---EEEecch--
Confidence 344567788888887777653 1 2345688999999999999999999764 223 2222111
Q ss_pred CHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccc--cc-c---------CCCCCCCcccc
Q 002133 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD--DI-G---------IPFWDGEKQSV 283 (961)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~--~l-~---------~~~~~~~~~~~ 283 (961)
+.... .+ .....+..+.+......+.+|+||+++....-. .. + ..+.. ....+
T Consensus 253 ----L~~k~---~G-------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~-~Ldg~ 317 (438)
T PTZ00361 253 ----LIQKY---LG-------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLN-QLDGF 317 (438)
T ss_pred ----hhhhh---cc-------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHH-HHhhh
Confidence 11110 11 112223334444444567899999986431100 00 0 00000 00001
Q ss_pred cCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 284 DNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
....+.+||.||.......... .-...+.+...+.++..++|..++.......+. ....++..+.|+-
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~s 389 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELS 389 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCC
Confidence 1234667888887655443222 123578999999999999999877533222211 1234555555554
No 155
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=4.3e-05 Score=76.87 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=27.2
Q ss_pred CcCCCEEEccCCCCCCC----ccccCCCCCcEEEeccCcCCccchhh-hcCCCcCEEecCC
Q 002133 581 LINLRTLSFDCCHLEDV----ARVGDLAKLEILSFRNSHIEQLPEQI-GNLTRLKLLDLSN 636 (961)
Q Consensus 581 l~~L~~L~L~~~~l~~~----~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~ 636 (961)
+++++.|||.+|.|++- ..+.+|+.|+.|+++.|.+..--... -.+.+|++|-|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence 45566666666666552 23345566666666655443111111 1334555555554
No 156
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.57 E-value=0.00054 Score=63.85 Aligned_cols=112 Identities=17% Similarity=0.240 Sum_probs=86.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHhhhhhchhhchHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 002133 2 AEELGSAAVSGIASKVVELLFDPIREEISYVCKYQSNVKELKNVGERVEQAVKHADRQGDDIFSDVQEWLTKFDEWTKRV 81 (961)
Q Consensus 2 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~l~~~~y~~ 81 (961)
||.++|||++++++.+.. .+.+.......++.-+++|..+++.|..++++.+..+...+..-+.-++++.+... +
T Consensus 3 ~eL~~gaalG~~~~eLlk----~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~-~ 77 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLK----AVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLE-K 77 (147)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHH-H
Confidence 788888888888888874 55566666677899999999999999999999987766666666888999999999 9
Q ss_pred hhhhhcccccccccccccccccccCchhhhhHHHHHHHHHHhhhhhhh
Q 002133 82 GNAVVEDEGEDEANKKRCTFKDLCSKMMTRYRLSKEAAKAAREGNIIL 129 (961)
Q Consensus 82 ~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 129 (961)
++++++.+... + .+++...++.+++|+++.+.+....
T Consensus 78 g~~LV~k~sk~-----~------r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 78 GKELVEKCSKV-----R------RWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHhccc-----c------HHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 99998876411 0 1345566777889998888544443
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0019 Score=69.44 Aligned_cols=197 Identities=15% Similarity=0.199 Sum_probs=111.3
Q ss_pred ccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc--------------CCCCEEEEEEecCCC
Q 002133 151 YVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE--------------DLFDVVVDAEVTHTP 215 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------~~f~~~~wv~~~~~~ 215 (961)
+.+++|.++..+.+...+..+++ +...++|+.|+||+++|..+++..-.. .|.| ..|+.-....
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~ 81 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQH 81 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccc
Confidence 45688999999999999987765 688999999999999999998875322 1222 2333211000
Q ss_pred CHHHHHHHHHHHhCCCccC-CCCHHHHHHHHHHHHHc----CCcEEEEEccccccc--ccccccCCCCCCCcccccCCCc
Q 002133 216 DWKEICGRIADQLGLEIVR-PDSLVEKANQLRQALKK----KKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGR 288 (961)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~----~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~g 288 (961)
+-+.+-..-++..+..... ..-..+.+..+.+.+.. +++-++|+|+++... ..+.+...+-+ -.+.
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE-------Pp~~ 154 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-------PGNG 154 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC-------CCCC
Confidence 0000000111111110000 00112334455555542 456788999987652 33333322222 1133
Q ss_pred eEEEEEecchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 289 WTLLLASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 289 s~IlvTtR~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
.-|++|++...+...-......+.+.++++++..+.+.+........ .....++..++|.|..+...
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch----hHHHHHHHHcCCCHHHHHHH
Confidence 33455554444433223445689999999999999998865321111 11357899999999766443
No 158
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00015 Score=69.26 Aligned_cols=103 Identities=22% Similarity=0.201 Sum_probs=86.2
Q ss_pred cCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC--ccccCCcCCCEEE
Q 002133 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP--LSLGSLINLRTLS 588 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp--~~~~~l~~L~~L~ 588 (961)
..+...+++++|++..++....+++|.+|.+..|.++ .+.+.+-..+++|..|.|.+|++..+- .-+..++.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3456788999999988877778999999999999998 566666677889999999999988653 2367899999999
Q ss_pred ccCCCCCC-----CccccCCCCCcEEEeccC
Q 002133 589 FDCCHLED-----VARVGDLAKLEILSFRNS 614 (961)
Q Consensus 589 L~~~~l~~-----~~~~~~l~~L~~L~l~~~ 614 (961)
+-+|.++. .-.+..+++|+.||.++-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99999877 256889999999999874
No 159
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.49 E-value=0.0033 Score=69.85 Aligned_cols=181 Identities=15% Similarity=0.209 Sum_probs=98.4
Q ss_pred CCccccCCchHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (961)
....++.|.+..+++|.+.+. . ...+-+.++|++|+|||++|+++++.... .| +.+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~f---i~i~~---- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TF---IRVVG---- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE---EEEeh----
Confidence 345667888877777766553 1 23567889999999999999999987542 22 22211
Q ss_pred CHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc------------cccccCCCCCCCcccc
Q 002133 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------LDDIGIPFWDGEKQSV 283 (961)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------------~~~l~~~~~~~~~~~~ 283 (961)
..+.... .+ .....+..+....+...+.+|++|+++.... .......+.. ....+
T Consensus 213 --s~l~~k~---~g-------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~-~ld~~ 279 (398)
T PTZ00454 213 --SEFVQKY---LG-------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLN-QMDGF 279 (398)
T ss_pred --HHHHHHh---cc-------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHH-Hhhcc
Confidence 1111111 11 1122333444444445779999999875310 0000000000 00011
Q ss_pred cCCCceEEEEEecchhhhhhc-C---CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 284 DNQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~~~~-~---~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
....+..||.||......... . .-...+.+...+.++...+|..+........+. -..++++...|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 133567788888765443221 1 223468898889999888888766432222211 1245666666654
No 160
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00043 Score=75.30 Aligned_cols=131 Identities=18% Similarity=0.280 Sum_probs=84.9
Q ss_pred cCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCC-CCCCCCccccCCcCCCEEEc
Q 002133 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGI-HFPSLPLSLGSLINLRTLSF 589 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~-~~~~lp~~~~~l~~L~~L~L 589 (961)
..++++|++++|.+..+|. --++|++|.+.+|.....+|..+ .++|++|++++| .+..+|.. |+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEEe
Confidence 4678899999999888883 22469999998866555666544 368999999998 66677754 677777
Q ss_pred cCCCCCCCccccCC-CCCcEEEeccCc-C--CccchhhhcC-CCcCEEecCCCCCCcccChHHHhcCccCCEEEccCC
Q 002133 590 DCCHLEDVARVGDL-AKLEILSFRNSH-I--EQLPEQIGNL-TRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS 662 (961)
Q Consensus 590 ~~~~l~~~~~~~~l-~~L~~L~l~~~~-l--~~lp~~~~~l-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 662 (961)
+++....+ ..+ .+|+.|.+.+++ . ..+|. .+ ++|++|++++|..+ .+|+. +. .+|+.|.++.+
T Consensus 120 ~~n~~~~L---~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~-LP--~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSI---KNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEK-LP--ESLQSITLHIE 187 (426)
T ss_pred CCCCCccc---ccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccc-cc--ccCcEEEeccc
Confidence 76654332 222 246677765432 1 12221 12 57889999887644 33432 22 47888888765
No 161
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00071 Score=81.01 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=93.4
Q ss_pred ccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC-C---CCEEEEEEecCCCCHHHHHHHHHH
Q 002133 151 YVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKED-L---FDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
.+.++||++++.++++.|......-+.++|++|+|||++|+.+++...... . .++.+|.. +...+ +.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 467899999999999988765555667999999999999999998764322 1 23444421 11111 10
Q ss_pred HhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc----------cccccCCCCCCCcccccCCCceEEEEEec
Q 002133 227 QLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----------LDDIGIPFWDGEKQSVDNQGRWTLLLASR 296 (961)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------~~~l~~~~~~~~~~~~~~~~gs~IlvTtR 296 (961)
+....+ ........+.+.+...++.+|++|++..... ...+..++. ..+.-++|-+|.
T Consensus 256 --G~~~~G--e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--------~~g~i~vIgATt 323 (758)
T PRK11034 256 --GTKYRG--DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--------SSGKIRVIGSTT 323 (758)
T ss_pred --ccchhh--hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--------hCCCeEEEecCC
Confidence 111011 2333444555555544668999999975311 111111111 233455665555
Q ss_pred chhhh------hhcCCCCceEEccCCCHHHHHHHHHHHh
Q 002133 297 DQHVL------RINMSNPRIFSISTLADGEAKSLFEKIV 329 (961)
Q Consensus 297 ~~~v~------~~~~~~~~~~~l~~L~~~~s~~Lf~~~~ 329 (961)
..... .........+.++..+.++..+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 43321 0001223479999999999999998754
No 162
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.45 E-value=1.4e-05 Score=70.90 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=41.2
Q ss_pred CCCceeEEEecCCCCCCCCccccC-CcCCCEEEccCCCCCC-CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEec
Q 002133 557 GMTELLVLHLTGIHFPSLPLSLGS-LINLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDL 634 (961)
Q Consensus 557 ~l~~L~~L~L~~~~~~~lp~~~~~-l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 634 (961)
...+|...+|++|.+..+|..|.. .+.+..|+|++|.+++ |..+..++.|+.|+++.|.+...|..+..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 344555555666655555554432 2345555555555555 44455555555555555555555554444555555554
Q ss_pred CC
Q 002133 635 SN 636 (961)
Q Consensus 635 ~~ 636 (961)
.+
T Consensus 131 ~~ 132 (177)
T KOG4579|consen 131 PE 132 (177)
T ss_pred CC
Confidence 44
No 163
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.43 E-value=0.0016 Score=73.88 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=93.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC-EEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD-VVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
..-+.|+|..|+|||+||+++++..... +.. .++|++. .++..++...+... . ...+.+.++.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~-----~----~~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc-----c----HHHHHHHHHh
Confidence 3458999999999999999999987643 233 4567754 34556665554311 1 1233333332
Q ss_pred CCcEEEEEcccccccc---c-ccccCCCCCCCcccccCCCceEEEEEecch-hhh-------hhcCCCCceEEccCCCHH
Q 002133 252 KKRVLVILDDIWTQIN---L-DDIGIPFWDGEKQSVDNQGRWTLLLASRDQ-HVL-------RINMSNPRIFSISTLADG 319 (961)
Q Consensus 252 ~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~-~v~-------~~~~~~~~~~~l~~L~~~ 319 (961)
+.-+|++||+..... + +.+...+.. + ...|..||+||... .-. ...+....++++++.+.+
T Consensus 194 -~~dvLlIDDi~~l~~~~~~q~elf~~~n~-----l-~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 194 -KVDVLLIDDVQFLIGKTGVQTELFHTFNE-----L-HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred -cCCEEEEechhhhcCcHHHHHHHHHHHHH-----H-HHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 345889999975311 1 111111100 0 12244688887522 111 111334457899999999
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 320 EAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 320 ~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
.-..++.+.+...... --+++..-|++.+.|.--.+
T Consensus 267 ~r~~IL~~~~~~~~~~-l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 267 TRKKIARKMLEIEHGE-LPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHHHHHhcCCC-CCHHHHHHHHhccccCHHHH
Confidence 9999999887532111 12456778888888764433
No 164
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.42 E-value=0.0012 Score=73.59 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=84.4
Q ss_pred chHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCC
Q 002133 157 RNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD 236 (961)
Q Consensus 157 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 236 (961)
|.....++.+.+..... ++.|+|+-++||||+++.+....... .+++...+......-+.+...
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~---------- 85 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLR---------- 85 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHH----------
Confidence 33455666666543333 99999999999999996666554322 555554433211111111111
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecchhhh-----hhcCCCCceE
Q 002133 237 SLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-----RINMSNPRIF 311 (961)
Q Consensus 237 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~-----~~~~~~~~~~ 311 (961)
.+.+.-. .++..|+||.|.....|......+.+ .++. +|++|+-+.... ....+....+
T Consensus 86 -------~~~~~~~-~~~~yifLDEIq~v~~W~~~lk~l~d-------~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~ 149 (398)
T COG1373 86 -------AYIELKE-REKSYIFLDEIQNVPDWERALKYLYD-------RGNL-DVLITGSSSSLLSKEISESLAGRGKDL 149 (398)
T ss_pred -------HHHHhhc-cCCceEEEecccCchhHHHHHHHHHc-------cccc-eEEEECCchhhhccchhhhcCCCceeE
Confidence 1111111 15689999999999999887666665 4444 888888776554 2223445689
Q ss_pred EccCCCHHHHHHH
Q 002133 312 SISTLADGEAKSL 324 (961)
Q Consensus 312 ~l~~L~~~~s~~L 324 (961)
++-|||-.|-..+
T Consensus 150 ~l~PlSF~Efl~~ 162 (398)
T COG1373 150 ELYPLSFREFLKL 162 (398)
T ss_pred EECCCCHHHHHhh
Confidence 9999999887654
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.41 E-value=0.0012 Score=81.15 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=43.7
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...++++||+.++.++++.|.......+.++|++|+|||++|..++....
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 34577999999999999999876666778999999999999999999874
No 166
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.004 Score=67.41 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=86.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcC--------------------CCCEEEEEEecCCCCHHHHHHHHHHHhCCCc
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKED--------------------LFDVVVDAEVTHTPDWKEICGRIADQLGLEI 232 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 232 (961)
...+.++|+.|+||||+|+.++...--.. |.| ..|+.-...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~------------------ 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEA------------------ 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCC------------------
Confidence 45678999999999999999998864321 112 122211000
Q ss_pred cCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEEEecchh-hhhhcC
Q 002133 233 VRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH-VLRINM 305 (961)
Q Consensus 233 ~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~-v~~~~~ 305 (961)
...-..+.+.++.+.+. .+++-++|+|+++.. ...+.+...+-+ -.+++.+|+||.+.. +...-.
T Consensus 83 -~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-------Pp~~~~fiL~t~~~~~ll~TI~ 154 (328)
T PRK05707 83 -DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE-------PSGDTVLLLISHQPSRLLPTIK 154 (328)
T ss_pred -CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC-------CCCCeEEEEEECChhhCcHHHH
Confidence 00001122223333332 134445578999865 333444332222 224566666666653 332212
Q ss_pred CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 306 SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 306 ~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
.....+.+.+++.+++.+.+....... ..+.+..++..++|.|+.+..+
T Consensus 155 SRc~~~~~~~~~~~~~~~~L~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 155 SRCQQQACPLPSNEESLQWLQQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred hhceeeeCCCcCHHHHHHHHHHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 334579999999999998887653111 1233567889999999765444
No 167
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.0052 Score=62.22 Aligned_cols=186 Identities=13% Similarity=0.117 Sum_probs=99.7
Q ss_pred cCCccccCCchHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHH
Q 002133 148 VRGYVHFPSRNPVFQKMMESLR-----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (961)
+....+|+|.++..+++--.+. +..+.-+.++|++|.||||||.-+++...+. + -+.......-..=+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~gDla 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKPGDLA 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccChhhHH
Confidence 3457889999998888765554 4556789999999999999999999998754 1 111111111111112
Q ss_pred HHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc---------cccccc-----CCCCCCCcccccCCCc
Q 002133 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI---------NLDDIG-----IPFWDGEKQSVDNQGR 288 (961)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---------~~~~l~-----~~~~~~~~~~~~~~~g 288 (961)
.|+..+. +.=.+.+|.+.... ..+++. ..-+....-++.-.+-
T Consensus 96 aiLt~Le-----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 96 AILTNLE-----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred HHHhcCC-----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 2222221 12233444443210 000000 0000000000001122
Q ss_pred eEEEEEecchhhhhh-cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHh
Q 002133 289 WTLLLASRDQHVLRI-NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (961)
Q Consensus 289 s~IlvTtR~~~v~~~-~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 363 (961)
.-|=.|||.-.+... ...-..+.+++-.+.+|-.+...+.+..-...- -++-+.+|+++..|-|--+.-+-+..
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i-~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI-DEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 335568887554311 112234678999999999999988774211111 13457899999999997554444433
No 168
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.39 E-value=0.0027 Score=71.81 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=92.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcC
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (961)
...+.|+|..|+|||+|++++++....+..=..+++++. .++..++...+... . ...+.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----K----MEEFKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----C----HHHHHHHHHh-
Confidence 346889999999999999999998764321124556643 33444454444311 1 2234444442
Q ss_pred CcEEEEEccccccccc---c-cccCCCCCCCcccccCCCceEEEEEecchhhh--------hhcCCCCceEEccCCCHHH
Q 002133 253 KRVLVILDDIWTQINL---D-DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL--------RINMSNPRIFSISTLADGE 320 (961)
Q Consensus 253 kr~LlVlDdv~~~~~~---~-~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~--------~~~~~~~~~~~l~~L~~~~ 320 (961)
.-+|||||++..... . .+...+-. + ...+..+|+|+....-. ...+.....+.+++.+.++
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~-----~-~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNA-----L-HENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLET 272 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHH-----H-HHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHH
Confidence 348899999754211 1 11110000 0 12344677777642211 1112333578999999999
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 321 AKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 321 s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
-..++.+.+......- -+++...|++.+.|..-.+
T Consensus 273 r~~il~~~~~~~~~~l-~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 273 RLAILQKKAEEEGLEL-PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHhcCCCHHHH
Confidence 9999998885432211 2456677888888766543
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.38 E-value=0.0023 Score=79.01 Aligned_cols=158 Identities=14% Similarity=0.188 Sum_probs=90.9
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCEEEE-EEecCCCCHHHHHHHH
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVD-AEVTHTPDWKEICGRI 224 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~i 224 (961)
..++++||++++.++++.|.......+.++|++|+|||++|..++++...... ....+| +++ ..+..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~a-- 242 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALIA-- 242 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHhh--
Confidence 45679999999999999998666666779999999999999999988643211 122233 221 11110
Q ss_pred HHHhCCCccCCCCHHHHHHHHHHHHH-cCCcEEEEEcccccccc---------cccccCCCCCCCcccccCCCceEEEEE
Q 002133 225 ADQLGLEIVRPDSLVEKANQLRQALK-KKKRVLVILDDIWTQIN---------LDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (961)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~gs~IlvT 294 (961)
+....+ .....+..+...+. .+++.+|++|++..... ...+..+.- ..+.-++|.+
T Consensus 243 ----~~~~~g--~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--------~~g~i~~Iga 308 (852)
T TIGR03346 243 ----GAKYRG--EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--------ARGELHCIGA 308 (852)
T ss_pred ----cchhhh--hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--------hcCceEEEEe
Confidence 000000 22333444444443 24579999999975421 011111211 2233455555
Q ss_pred ecchhhh------hhcCCCCceEEccCCCHHHHHHHHHHHh
Q 002133 295 SRDQHVL------RINMSNPRIFSISTLADGEAKSLFEKIV 329 (961)
Q Consensus 295 tR~~~v~------~~~~~~~~~~~l~~L~~~~s~~Lf~~~~ 329 (961)
|...... .........+.+...+.++..+++....
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 5443221 0011223467889899999999887654
No 170
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.33 E-value=0.0029 Score=72.77 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (961)
..+.|+|..|+|||.|++++++.......--.+++++. .++..++...+.. .....+++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~---------~~~~~f~~~y~~-- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD---------GKGDSFRRRYRE-- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh---------ccHHHHHHHhhc--
Confidence 45899999999999999999998764211224456643 3444444443321 012234444442
Q ss_pred cEEEEEccccccc---cccc-ccCCCCCCCcccccCCCceEEEEEecchh--h------hhhcCCCCceEEccCCCHHHH
Q 002133 254 RVLVILDDIWTQI---NLDD-IGIPFWDGEKQSVDNQGRWTLLLASRDQH--V------LRINMSNPRIFSISTLADGEA 321 (961)
Q Consensus 254 r~LlVlDdv~~~~---~~~~-l~~~~~~~~~~~~~~~~gs~IlvTtR~~~--v------~~~~~~~~~~~~l~~L~~~~s 321 (961)
-=+|||||+.... .|+. +..-+.. + ...|..|||||+... + ....+...-++++++.+.+.-
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~-----l-~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNT-----L-HNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHH-----H-HhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 3588999997542 1211 1111100 0 123456888887631 1 122345566899999999999
Q ss_pred HHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH
Q 002133 322 KSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (961)
Q Consensus 322 ~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 354 (961)
..++.+++......- -+++++-|++.+.+..-
T Consensus 452 ~aIL~kka~~r~l~l-~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 452 IAILRKKAVQEQLNA-PPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHhccCCHH
Confidence 999998875332211 13566667777665543
No 171
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.33 E-value=0.0057 Score=74.81 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=37.9
Q ss_pred cccCCchHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 152 VHFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..++|.++..+.|.+++. ..+.+++.++|++|+|||++|+.+++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 346788888888887664 12345799999999999999999999875
No 172
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.32 E-value=0.0034 Score=71.97 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=93.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcC
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (961)
...+.|+|+.|+|||+|++++++....+..-..+++++.. ++..++...+... . ...+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~----~~~~~~~~~-- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----T----MEEFKEKYR-- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----c----HHHHHHHHh--
Confidence 3568999999999999999999987643212245566543 3333444333211 1 233444454
Q ss_pred CcEEEEEcccccccc---c-ccccCCCCCCCcccccCCCceEEEEEecchh--hh------hhcCCCCceEEccCCCHHH
Q 002133 253 KRVLVILDDIWTQIN---L-DDIGIPFWDGEKQSVDNQGRWTLLLASRDQH--VL------RINMSNPRIFSISTLADGE 320 (961)
Q Consensus 253 kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~--v~------~~~~~~~~~~~l~~L~~~~ 320 (961)
+.-+|||||+..... + +.+...+-. + ...|..||+||.... +. ...+.....+++++.+.++
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~-----l-~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNA-----L-HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET 284 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHH-----H-HHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence 345899999965321 1 111110000 0 112445777776532 10 1123444679999999999
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 321 AKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 321 s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
-..++.+.+..... .--+++..-|++.+.|..-.+
T Consensus 285 r~~il~~~~~~~~~-~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 285 RIAILKKKAEEEGI-DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHcCcCCCHHHH
Confidence 99999998853211 112356778888888876543
No 173
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.30 E-value=0.0023 Score=68.87 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=68.3
Q ss_pred HHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCE-EEEEEecCCC-CHHHHHHHHHHHhCCCccCCCC
Q 002133 161 FQKMMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV-VVDAEVTHTP-DWKEICGRIADQLGLEIVRPDS 237 (961)
Q Consensus 161 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~ 237 (961)
..++++.+.- ..-..+.|+|..|+|||||++.+++..... +-+. ++|+.+.+.. ++.++.+.+...+.........
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 4456776652 233457999999999999999999987643 4454 4777776554 7888888888777654432211
Q ss_pred HH-----HHHHHHHHHH-HcCCcEEEEEcccccc
Q 002133 238 LV-----EKANQLRQAL-KKKKRVLVILDDIWTQ 265 (961)
Q Consensus 238 ~~-----~~~~~l~~~l-~~~kr~LlVlDdv~~~ 265 (961)
.. ......-+++ .++++++||+|++..-
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 11 1122233333 4589999999998643
No 174
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.29 E-value=0.0075 Score=69.99 Aligned_cols=182 Identities=14% Similarity=0.125 Sum_probs=95.1
Q ss_pred cCCccccCCchHHHHHHHHHh---cc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC
Q 002133 148 VRGYVHFPSRNPVFQKMMESL---RD---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (961)
.....++.|-++..+++.+.+ .. ...+-+.++|++|+|||++|+.++..... . ++.++.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~-- 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISG-- 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccH--
Confidence 344667788776655544433 21 12345889999999999999999977542 1 222221
Q ss_pred CHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc------------ccccCCCCCCCcccc
Q 002133 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL------------DDIGIPFWDGEKQSV 283 (961)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~------------~~l~~~~~~~~~~~~ 283 (961)
.++.... .+ .....+..+.+..+...+.+|+|||++....- ......+.. ....+
T Consensus 122 --~~~~~~~---~g-------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~-~~d~~ 188 (495)
T TIGR01241 122 --SDFVEMF---VG-------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV-EMDGF 188 (495)
T ss_pred --HHHHHHH---hc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHh-hhccc
Confidence 1111111 01 01122233333333345689999999654110 000000000 00011
Q ss_pred cCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 284 DNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
....+..||.||.......... .-...+.+...+.++-.++|..++.......+ .....+++.+.|.-
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 1344556777776543221111 22357889999999999999887754322222 12347788887743
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.29 E-value=0.00076 Score=78.59 Aligned_cols=53 Identities=13% Similarity=0.290 Sum_probs=43.0
Q ss_pred cccCCccccCCchHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 146 FSVRGYVHFPSRNPVFQKMMESLRD-----SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+...++++|.++.++++..++.. ...+++.|+|+.|+||||+++.++....
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3355677899999999999888863 2345799999999999999999998754
No 176
>PRK06620 hypothetical protein; Validated
Probab=97.26 E-value=0.00092 Score=67.74 Aligned_cols=134 Identities=19% Similarity=0.032 Sum_probs=76.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (961)
+.+.|+|+.|+|||+|++.+++.... .++. .... . . +..+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~--------------------~-~-------~~~~--~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF--------------------N-E-------EILE--K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh--------------------c-h-------hHHh--c
Confidence 56899999999999999987765421 1211 0000 0 0 1112 2
Q ss_pred cEEEEEcccccccc--cccccCCCCCCCcccccCCCceEEEEEecchhhh------hhcCCCCceEEccCCCHHHHHHHH
Q 002133 254 RVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL------RINMSNPRIFSISTLADGEAKSLF 325 (961)
Q Consensus 254 r~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~------~~~~~~~~~~~l~~L~~~~s~~Lf 325 (961)
.-++++||+....+ +..+...+ ...|..||+|++..... ...+....++++++++.++-..++
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~---------~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l 156 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNII---------NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILI 156 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHH---------HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHH
Confidence 35788899973321 11111111 13456889998754321 122344558999999999988888
Q ss_pred HHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 326 EKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
.+.+..... .--+++.+-|++.+.|---++
T Consensus 157 ~k~~~~~~l-~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 157 FKHFSISSV-TISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHHHHHcCC-CCCHHHHHHHHHHccCCHHHH
Confidence 887642211 111345666777776654433
No 177
>PRK08118 topology modulation protein; Reviewed
Probab=97.22 E-value=0.00018 Score=69.86 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc-CCCCEEEE
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKE-DLFDVVVD 208 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 208 (961)
+.|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987654 45777776
No 178
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.03 Score=58.84 Aligned_cols=199 Identities=17% Similarity=0.188 Sum_probs=116.6
Q ss_pred ccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCH
Q 002133 151 YVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (961)
..++-|-++.+++|.+... -+..+=|.++|++|.|||-||++|+++-... |+.+...
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS--- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS--- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH---
Confidence 4455577888887777654 1345668899999999999999999876532 4444432
Q ss_pred HHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc------------c----ccccCCCCCCCcc
Q 002133 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------L----DDIGIPFWDGEKQ 281 (961)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------------~----~~l~~~~~~~~~~ 281 (961)
++.++.+ | .-...+.++.+.-+.+.+..|.+|.++.... . -++... ..
T Consensus 220 -ElVqKYi---G-------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q-----lD 283 (406)
T COG1222 220 -ELVQKYI---G-------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ-----LD 283 (406)
T ss_pred -HHHHHHh---c-------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh-----cc
Confidence 2222221 2 2244566677766777889999998864310 0 000000 11
Q ss_pred cccCCCceEEEEEecchhhhhhc-C---CCCceEEccCCCHHHHHHHHHHHhCCCC--CCCchhHHHHHHHHhhCCch--
Q 002133 282 SVDNQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVGDSA--KESDCRAIGVEIVGKCGGLP-- 353 (961)
Q Consensus 282 ~~~~~~gs~IlvTtR~~~v~~~~-~---~~~~~~~l~~L~~~~s~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP-- 353 (961)
.|......|||..|-...+.... . .-.+.+++..=+.+.-.+.|+-|+..-. .+-++ +.+++.+.|.-
T Consensus 284 GFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGA 359 (406)
T COG1222 284 GFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGA 359 (406)
T ss_pred CCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchH
Confidence 23356778999998776655221 1 2234677775555555666666665322 23333 35667777665
Q ss_pred --HHHHHHHHHhc---cC---ChHHHHHHHHHHH
Q 002133 354 --IAVSTIANALK---GQ---STHVWKDAINWLR 379 (961)
Q Consensus 354 --Lai~~~~~~L~---~~---~~~~w~~~~~~l~ 379 (961)
.|+-+=|+++. .+ +.+++.++.++..
T Consensus 360 dlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 360 DLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 44555566654 22 4566666665543
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.20 E-value=0.0011 Score=62.56 Aligned_cols=90 Identities=20% Similarity=0.072 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (961)
..+.|+|++|+||||+|+.++....... ..++++..+........... ...................+.+.....+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999998776432 23566655544322222211 1111111111133344445555555433
Q ss_pred cEEEEEcccccccc
Q 002133 254 RVLVILDDIWTQIN 267 (961)
Q Consensus 254 r~LlVlDdv~~~~~ 267 (961)
..+|++|+++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 48999999987643
No 180
>CHL00176 ftsH cell division protein; Validated
Probab=97.19 E-value=0.0054 Score=72.20 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=94.6
Q ss_pred CccccCCchHHHHHH---HHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCH
Q 002133 150 GYVHFPSRNPVFQKM---MESLRDS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l---~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (961)
...++.|.++..+++ ++.+... ..+-+.++|++|+|||++|++++..... . |+.++.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p-----~i~is~---- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--P-----FFSISG---- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----eeeccH----
Confidence 345677876655444 4444321 2346889999999999999999886542 1 233221
Q ss_pred HHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc----------------cccccCCCCCCCcc
Q 002133 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----------------LDDIGIPFWDGEKQ 281 (961)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~ 281 (961)
.++.... .+ ........+.+......+++|+|||++.... +..+...+ .
T Consensus 250 s~f~~~~---~g-------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~-----d 314 (638)
T CHL00176 250 SEFVEMF---VG-------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEM-----D 314 (638)
T ss_pred HHHHHHh---hh-------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhh-----c
Confidence 1111100 01 0111223333333445779999999964310 11111000 0
Q ss_pred cccCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCc
Q 002133 282 SVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL 352 (961)
Q Consensus 282 ~~~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 352 (961)
.+....+..||.||.......... .-...+.+...+.++-.++++.++......+ ......+++.+.|.
T Consensus 315 g~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 315 GFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred cccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 011345666777776644332111 1235788888999999999988875422222 22345677777773
No 181
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.17 E-value=0.00074 Score=62.93 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=41.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCC-c
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK-R 254 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-r 254 (961)
|.|+|+.|+||||+|+.+++.... ..+.++.+.-.+. ...+....+..+.+...... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc----------------cccccccccccccccccccccc
Confidence 579999999999999999998752 1344443321100 00022223333333333333 7
Q ss_pred EEEEEcccccc
Q 002133 255 VLVILDDIWTQ 265 (961)
Q Consensus 255 ~LlVlDdv~~~ 265 (961)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999765
No 182
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.0064 Score=66.27 Aligned_cols=146 Identities=13% Similarity=0.176 Sum_probs=83.4
Q ss_pred ccCC-chHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC--------------------CCCEEEEEE
Q 002133 153 HFPS-RNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED--------------------LFDVVVDAE 210 (961)
Q Consensus 153 ~~~g-r~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~ 210 (961)
.++| .+..++.+.+.+...++ +...++|+.|+||||+|+.+.+..--.. |.|..+...
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 4556 67777888888776665 4568999999999999999988753221 222211111
Q ss_pred ecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCccccc
Q 002133 211 VTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVD 284 (961)
Q Consensus 211 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 284 (961)
.+.... .+.+..+.+.+. .+++-++|+|+++... ..+.+...+-+
T Consensus 86 ~~~~i~----------------------id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE------- 136 (329)
T PRK08058 86 DGQSIK----------------------KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE------- 136 (329)
T ss_pred ccccCC----------------------HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-------
Confidence 111111 122222333322 1345678999986652 23333222222
Q ss_pred CCCceEEEEEecchh-hhhhcCCCCceEEccCCCHHHHHHHHHH
Q 002133 285 NQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEK 327 (961)
Q Consensus 285 ~~~gs~IlvTtR~~~-v~~~~~~~~~~~~l~~L~~~~s~~Lf~~ 327 (961)
-..++.+|++|.+.. +...-......+++.+++.++..+.+.+
T Consensus 137 Pp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 PSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 234566666665533 3222233346899999999998777764
No 183
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.025 Score=56.81 Aligned_cols=194 Identities=14% Similarity=0.180 Sum_probs=108.1
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEec-CCCCHHHHHHHHHHHhCCCccCC--
Q 002133 159 PVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT-HTPDWKEICGRIADQLGLEIVRP-- 235 (961)
Q Consensus 159 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~-- 235 (961)
+.+..+...+ .++..++.++|.-|.|||.++++........ .++-+.+. ...+...+...|+..+..+....
T Consensus 38 e~l~~l~~~i-~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 38 EALLMLHAAI-ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred HHHHHHHHHH-hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhH
Confidence 3344444433 4555689999999999999999665554321 22224443 34567788888888877622211
Q ss_pred CCHHHHHHHHHHHHHcCCc-EEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEEEecch--------hhhhhc
Q 002133 236 DSLVEKANQLRQALKKKKR-VLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ--------HVLRIN 304 (961)
Q Consensus 236 ~~~~~~~~~l~~~l~~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~--------~v~~~~ 304 (961)
.......+.+.+..++++| ..+++||.... ...+.++ .|++... .....-+|+..-..+ ......
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lr-ll~nl~~---~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~ 188 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALR-LLTNLEE---DSSKLLSIVLIGQPKLRPRLRLPVLRELE 188 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHH-HHHhhcc---cccCceeeeecCCcccchhhchHHHHhhh
Confidence 0122334445555566787 99999998654 1222111 0110000 011112233332221 111111
Q ss_pred CCCCceEEccCCCHHHHHHHHHHHhCCCCCCC--chhHHHHHHHHhhCCchHHHHHHHH
Q 002133 305 MSNPRIFSISTLADGEAKSLFEKIVGDSAKES--DCRAIGVEIVGKCGGLPIAVSTIAN 361 (961)
Q Consensus 305 ~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~--~~~~~~~~i~~~c~glPLai~~~~~ 361 (961)
......|++.|++.++...++..+......+. --.+....|.....|.|.+|..++.
T Consensus 189 ~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 189 QRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred heEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 11122399999999988888887765322211 1234567899999999999987764
No 184
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0034 Score=71.62 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=87.7
Q ss_pred CCchHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 002133 155 PSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL 228 (961)
Q Consensus 155 ~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 228 (961)
.|-++..++|++.|. .-+-+++++||++|+|||+|++.++.....+ | +-+.+..-.|..++-.-=-..+
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRTYI 400 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRTYI 400 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhcccccccc
Confidence 488899999999886 2345799999999999999999999988743 4 3344444333333211000001
Q ss_pred CCCccCCCCHHHHHHHHHHHHHc--CCcEEEEEcccccccc---------cccccCC-----CCCCCccccc-CCCceEE
Q 002133 229 GLEIVRPDSLVEKANQLRQALKK--KKRVLVILDDIWTQIN---------LDDIGIP-----FWDGEKQSVD-NQGRWTL 291 (961)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~~---------~~~l~~~-----~~~~~~~~~~-~~~gs~I 291 (961)
| . -. .++.+.++. .+.=+++||.++.... +-++..| |.+-... .+ .-...-.
T Consensus 401 G-----a-mP----GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLe-v~yDLS~VmF 469 (782)
T COG0466 401 G-----A-MP----GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLE-VPYDLSKVMF 469 (782)
T ss_pred c-----c-CC----hHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhcccc-CccchhheEE
Confidence 1 0 01 123333321 3567889999875410 0000011 1000000 00 1122233
Q ss_pred EEEecchh-hhhhcCCCCceEEccCCCHHHHHHHHHHHh
Q 002133 292 LLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIV 329 (961)
Q Consensus 292 lvTtR~~~-v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~ 329 (961)
|.|.-+-. +....+....++++.+.+++|-.+.-+++.
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 33433333 333335556799999999999888887765
No 185
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=3.3e-05 Score=76.88 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=67.1
Q ss_pred CCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCCCccccCCCCCcEEEeccCcCCccch--hhhcCCCcCEEecC
Q 002133 558 MTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPE--QIGNLTRLKLLDLS 635 (961)
Q Consensus 558 l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~ 635 (961)
+.+.+.|++.||.+..+. ...+++.|++|.|+-|.|+.+..+..|++|++|+|..|.|..+.. .+.++++|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 445566667777666442 234677777777777777777777777888888888877776643 36677788888877
Q ss_pred CCCCCcccCh----HHHhcCccCCEEE
Q 002133 636 NCSKLKVIKP----EVISRLSRLNELY 658 (961)
Q Consensus 636 ~~~~l~~~~~----~~l~~l~~L~~L~ 658 (961)
.|.-...-++ ..+.-|++|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 7554444332 3456677777776
No 186
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.09 E-value=0.018 Score=57.97 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=41.2
Q ss_pred cCCccccCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 002133 148 VRGYVHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKED 201 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 201 (961)
....+.++|-+...+.|++-.. .....-+.++|..|+|||++++++.+....++
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 3456778898887777665433 44455688999999999999999999887653
No 187
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.06 E-value=0.011 Score=66.99 Aligned_cols=154 Identities=12% Similarity=0.089 Sum_probs=86.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcC
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (961)
...+.|+|+.|+|||+|++++++..... ...+++++. ..+...+...+... ....+++.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~~-- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFYR-- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHcc--
Confidence 3568899999999999999999987643 223455542 34444554444311 1123444333
Q ss_pred CcEEEEEcccccccccc----cccCCCCCCCcccccCCCceEEEEEecchh-----hh---hhcCCCCceEEccCCCHHH
Q 002133 253 KRVLVILDDIWTQINLD----DIGIPFWDGEKQSVDNQGRWTLLLASRDQH-----VL---RINMSNPRIFSISTLADGE 320 (961)
Q Consensus 253 kr~LlVlDdv~~~~~~~----~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~-----v~---~~~~~~~~~~~l~~L~~~~ 320 (961)
+.-+|++||+....... .+...+.. + ...|..||+||.... +. ...+.....+++.+++.++
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~-----l-~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNS-----L-HTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEG 275 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHH-----H-HHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHH
Confidence 34588999986643211 11111100 0 112456888875421 10 1123445689999999999
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHhhCCc
Q 002133 321 AKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL 352 (961)
Q Consensus 321 s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 352 (961)
-..++.+.+...... --+++..-|+..+.|.
T Consensus 276 r~~iL~~k~~~~~~~-l~~evl~~la~~~~~d 306 (445)
T PRK12422 276 LRSFLERKAEALSIR-IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCC
Confidence 999999887532211 1134455566666543
No 188
>PHA00729 NTP-binding motif containing protein
Probab=97.05 E-value=0.0028 Score=63.57 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=28.8
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 163 KMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 163 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+++.+...+...|.|.|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455555555666799999999999999999998753
No 189
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.05 E-value=0.0047 Score=59.65 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=73.3
Q ss_pred CchHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEEEEecCC-
Q 002133 156 SRNPVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKED-------------------LFDVVVDAEVTHT- 214 (961)
Q Consensus 156 gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~~~- 214 (961)
|.++..+.+.+.+..++++ .+.++|+.|+||+++|..+++..--.. |.| ..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEeccccc
Confidence 5566777777777766654 679999999999999999988753222 223 233332222
Q ss_pred --CCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceE
Q 002133 215 --PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWT 290 (961)
Q Consensus 215 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~ 290 (961)
....++. ++...+...... +++=++|+||++.. +.++.+...+-+ -..+++
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~~~-----------------~~~KviiI~~ad~l~~~a~NaLLK~LEe-------pp~~~~ 134 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSPSE-----------------GKYKVIIIDEADKLTEEAQNALLKTLEE-------PPENTY 134 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-TT-----------------SSSEEEEEETGGGS-HHHHHHHHHHHHS-------TTTTEE
T ss_pred chhhHHHHH-HHHHHHHHHHhc-----------------CCceEEEeehHhhhhHHHHHHHHHHhcC-------CCCCEE
Confidence 2333322 444443322211 34668899999875 344444333322 345788
Q ss_pred EEEEecchhh-hhhcCCCCceEEccCCC
Q 002133 291 LLLASRDQHV-LRINMSNPRIFSISTLA 317 (961)
Q Consensus 291 IlvTtR~~~v-~~~~~~~~~~~~l~~L~ 317 (961)
+|++|++... ...-......+.+.++|
T Consensus 135 fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEEECChHHChHHHHhhceEEecCCCC
Confidence 8888877653 22222333456666553
No 190
>PRK08116 hypothetical protein; Validated
Probab=97.04 E-value=0.0016 Score=68.46 Aligned_cols=75 Identities=25% Similarity=0.322 Sum_probs=47.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (961)
..+.++|..|+|||.||.++++....+ -..+++++ ..+++..+........ ......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~------~~~~~~~~~~l~~-- 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG------KEDENEIIRSLVN-- 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc------cccHHHHHHHhcC--
Confidence 358899999999999999999998754 23456665 3445566655443211 1112234444543
Q ss_pred cEEEEEccccc
Q 002133 254 RVLVILDDIWT 264 (961)
Q Consensus 254 r~LlVlDdv~~ 264 (961)
-=||||||+..
T Consensus 179 ~dlLviDDlg~ 189 (268)
T PRK08116 179 ADLLILDDLGA 189 (268)
T ss_pred CCEEEEecccC
Confidence 23899999943
No 191
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.041 Score=58.99 Aligned_cols=180 Identities=13% Similarity=0.129 Sum_probs=99.4
Q ss_pred HHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------CCCCEEEEEEecCCCCHHH
Q 002133 160 VFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE-------------------DLFDVVVDAEVTHTPDWKE 219 (961)
Q Consensus 160 ~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~ 219 (961)
..+++.+.+..+++ ..+.++|+.|+||+++|+.++...--. .|.|. .|+.-..
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~------ 83 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEK------ 83 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCc------
Confidence 34556666655554 478899999999999999998865321 12221 1221100
Q ss_pred HHHHHHHHhCCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEE
Q 002133 220 ICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLL 293 (961)
Q Consensus 220 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~Ilv 293 (961)
.+..-..+.+..+.+.+. .+++-.+|+|+++.. ...+.+...+-+ -.+++.+|+
T Consensus 84 -------------~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL 143 (319)
T PRK06090 84 -------------EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-------PAPNCLFLL 143 (319)
T ss_pred -------------CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-------CCCCeEEEE
Confidence 000001122233333332 234567889998765 334444333322 233455555
Q ss_pred Ee-cchhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHhccCChHHHH
Q 002133 294 AS-RDQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWK 372 (961)
Q Consensus 294 Tt-R~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~ 372 (961)
+| +...+...-......+.+.+++++++.+.+.... .+ .+..+++.++|.|+.+..+ +.+.....++
T Consensus 144 ~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~~-----~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~ 211 (319)
T PRK06090 144 VTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----IT-----VPAYALKLNMGSPLKTLAM---MKEGGLEKYH 211 (319)
T ss_pred EECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----Cc-----hHHHHHHHcCCCHHHHHHH---hCCCcHHHHH
Confidence 54 4444543323344589999999999988886531 11 1356789999999876544 3333334444
Q ss_pred HHHHHH
Q 002133 373 DAINWL 378 (961)
Q Consensus 373 ~~~~~l 378 (961)
++...+
T Consensus 212 ~~~~~l 217 (319)
T PRK06090 212 KLERQL 217 (319)
T ss_pred HHHHHH
Confidence 444444
No 192
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.018 Score=61.79 Aligned_cols=174 Identities=15% Similarity=0.140 Sum_probs=94.8
Q ss_pred HHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcC-----------------CCCEEEEEEecCCCCHHHH
Q 002133 159 PVFQKMMESLRDSNVN-MIGLYGMGGVGKTTLVKVVARQVVKED-----------------LFDVVVDAEVTHTPDWKEI 220 (961)
Q Consensus 159 ~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~f~~~~wv~~~~~~~~~~~ 220 (961)
...+.+...+..++++ .+.++|+.|+||+++|..+++..--++ |-| ..|+.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~---- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT---- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc----
Confidence 3456666666665554 688999999999999999988764321 111 11221000000
Q ss_pred HHHHHHHhCCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEE
Q 002133 221 CGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLA 294 (961)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvT 294 (961)
+.+. ...-..+.+.++.+.+. .+++-++|+|+++... .-+.+...+-+ -.+++.+|++
T Consensus 86 --------~~k~-~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~~~fiL~ 149 (319)
T PRK08769 86 --------GDKL-RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-------PSPGRYLWLI 149 (319)
T ss_pred --------cccc-cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-------CCCCCeEEEE
Confidence 0000 00011223334444332 2456788999997652 22333222222 2335556666
Q ss_pred ecc-hhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHH
Q 002133 295 SRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (961)
Q Consensus 295 tR~-~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 360 (961)
|.+ ..+...-......+.+.+++.+++.+.+.+. + .+ ...+..++..++|.|+.+..+.
T Consensus 150 ~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~---~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 150 SAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G---VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C---CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 554 4443222233457899999999998887653 1 11 1235678999999998664443
No 193
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.00 E-value=0.0014 Score=63.74 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=52.4
Q ss_pred cCCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCH
Q 002133 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (961)
+....++||-++.++.+--...+.+.+-+.|.||+|+||||-+..+++..--...-+.+.-.+.|+...+
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI 92 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc
Confidence 3446678999999988877777888999999999999999999999988653333344455555554433
No 194
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.00 E-value=0.016 Score=70.18 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=86.3
Q ss_pred cccCCchHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
...+|.++..++|++++. .....++.++|++|+||||+|+.++..... .| +-+..+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~--~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR--KY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC--CE---EEEEcCCCCCHHHhccchh
Confidence 456799999999988776 124568999999999999999999987652 23 2233333333332221111
Q ss_pred HHhCCCccCCCCHHHHHHHHHHHHHc--CCcEEEEEccccccccc------ccccCCC--------CCCCcccccCCCce
Q 002133 226 DQLGLEIVRPDSLVEKANQLRQALKK--KKRVLVILDDIWTQINL------DDIGIPF--------WDGEKQSVDNQGRW 289 (961)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~~~------~~l~~~~--------~~~~~~~~~~~~gs 289 (961)
...|. ... .+.+.+.. ...-+++||+++....- ..+...+ .+......-.-...
T Consensus 397 ~~~g~------~~G----~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 397 TYIGS------MPG----KLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ccCCC------CCc----HHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 11110 001 12222221 13457889998654210 0110000 00000000022445
Q ss_pred EEEEEecchhhhhhcCCCCceEEccCCCHHHHHHHHHHHh
Q 002133 290 TLLLASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKIV 329 (961)
Q Consensus 290 ~IlvTtR~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~ 329 (961)
-+|.|+....+.........++.+.+++.++-.++..++.
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5566665544332223344578999999999888877664
No 195
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.00034 Score=69.91 Aligned_cols=81 Identities=26% Similarity=0.383 Sum_probs=39.3
Q ss_pred CcCCCEEEccCCCCCCCccccCCCCCcEEEeccC--cCC-ccchhhhcCCCcCEEecCCCCCCc---ccChHHHhcCccC
Q 002133 581 LINLRTLSFDCCHLEDVARVGDLAKLEILSFRNS--HIE-QLPEQIGNLTRLKLLDLSNCSKLK---VIKPEVISRLSRL 654 (961)
Q Consensus 581 l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~--~l~-~lp~~~~~l~~L~~L~l~~~~~l~---~~~~~~l~~l~~L 654 (961)
+..|+.|++.++.++....+-.|++|++|.++.| ++. .++....++++|++|++++ |+++ .+++ +..+.+|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP--LKELENL 118 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch--hhhhcch
Confidence 3444444455555544445555555555555555 333 3443344445555555555 2332 2222 3455555
Q ss_pred CEEEccCCCC
Q 002133 655 NELYMGNSFT 664 (961)
Q Consensus 655 ~~L~l~~~~~ 664 (961)
..|++.+|..
T Consensus 119 ~~Ldl~n~~~ 128 (260)
T KOG2739|consen 119 KSLDLFNCSV 128 (260)
T ss_pred hhhhcccCCc
Confidence 5555555543
No 196
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.97 E-value=0.004 Score=62.05 Aligned_cols=88 Identities=25% Similarity=0.231 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCccCC---CCHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRP---DSLVEKANQLRQA 248 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~ 248 (961)
.+|+.+||+.|+||||.+-+++.....+ -..+..++... .....+-++..++.++++.... .+..+...+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999888888887754 33456666543 3356777888899998774332 2344444444444
Q ss_pred HHcCCcEEEEEccc
Q 002133 249 LKKKKRVLVILDDI 262 (961)
Q Consensus 249 l~~~kr~LlVlDdv 262 (961)
...++.=+|++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44333457788865
No 197
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.024 Score=60.86 Aligned_cols=177 Identities=10% Similarity=0.085 Sum_probs=93.2
Q ss_pred HHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC-----c-
Q 002133 160 VFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLE-----I- 232 (961)
Q Consensus 160 ~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~- 232 (961)
....+.+.+..+++ ....++|+.|+||+++|+.++...--....... .+... ...+.+...-+.+ .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQC----HSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHhcCCCCCEEEEccc
Confidence 34556666665554 567799999999999999999876432111000 00000 1111111000000 0
Q ss_pred cCCCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecch-hhhhhcC
Q 002133 233 VRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ-HVLRINM 305 (961)
Q Consensus 233 ~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~-~v~~~~~ 305 (961)
.+..-..+.+.++.+.+. .+++-.+|+|+++... ..+.+...+-+ -.+++.+|++|.+. .+...-.
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-------Pp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-------PRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECChHhCchHHH
Confidence 000011223333444432 2456678899997652 33343333322 23455666666554 4432212
Q ss_pred CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 306 SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 306 ~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
.....+.+.+++.++..+.+....... ...+...++.++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 234589999999999998887764211 112456788999999644
No 198
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.91 E-value=0.0083 Score=68.31 Aligned_cols=182 Identities=12% Similarity=0.094 Sum_probs=91.0
Q ss_pred ccccCCchHHHHHHHHHh---c-------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHH
Q 002133 151 YVHFPSRNPVFQKMMESL---R-------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEI 220 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 220 (961)
..++.|.+..++.+.+.. . -...+-|.++|++|+|||.+|+++++..... | +-++.+. +
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------l 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------L 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------h
Confidence 455667665555444321 1 1234568899999999999999999886531 2 2222211 1
Q ss_pred HHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc-ccccCC-----CCCCCccccc-CCCceEEEE
Q 002133 221 CGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL-DDIGIP-----FWDGEKQSVD-NQGRWTLLL 293 (961)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~-~~l~~~-----~~~~~~~~~~-~~~gs~Ilv 293 (961)
... ..+ .....+.++.+..+...+++|++|+++....- ..-... ........+. ...+.-||.
T Consensus 296 ~~~--------~vG--ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 296 FGG--------IVG--ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ccc--------ccC--hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 100 001 11223333444334457899999999753110 000000 0000000000 223444666
Q ss_pred EecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 294 ASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 294 TtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
||.........+ .-...+.++.-+.++-.++|..+.....+......-...+++...|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 775543321111 224578888889999999998887542211100111345666666654
No 199
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.86 E-value=0.0029 Score=64.14 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEe
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV 211 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 211 (961)
.++|+|..|.||||++..+..... +.|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 478999999999999999998766 56888877754
No 200
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.83 E-value=0.0045 Score=63.00 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=54.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh-C-----CCccCCCC---HHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL-G-----LEIVRPDS---LVEKA 242 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~-----~~~~~~~~---~~~~~ 242 (961)
.-+++.|+|++|+|||++|.+++...... -..++|++... ++..++.+ +++.. . .-.....+ .....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 35689999999999999999998876532 46789999876 55555443 33221 0 00000111 12234
Q ss_pred HHHHHHHHcCCcEEEEEccccc
Q 002133 243 NQLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 243 ~~l~~~l~~~kr~LlVlDdv~~ 264 (961)
..+.+.+...+.-+||+|.+..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHH
Confidence 4555555444456888887753
No 201
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.04 Score=62.17 Aligned_cols=89 Identities=24% Similarity=0.244 Sum_probs=50.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (961)
...+++|+|++|+||||++..++.....+.....+..++... .....+.++...+.++.......+..+.. ...+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~-~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLL-DLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHH-HHHHHhc
Confidence 347899999999999999999988765432233444554432 22233344444455555443332323333 3333333
Q ss_pred cCCcEEEEEcccc
Q 002133 251 KKKRVLVILDDIW 263 (961)
Q Consensus 251 ~~kr~LlVlDdv~ 263 (961)
+.-+|++|..-
T Consensus 428 --~~DLVLIDTaG 438 (559)
T PRK12727 428 --DYKLVLIDTAG 438 (559)
T ss_pred --cCCEEEecCCC
Confidence 34688889764
No 202
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.82 E-value=0.00032 Score=81.98 Aligned_cols=41 Identities=20% Similarity=0.550 Sum_probs=20.2
Q ss_pred ccEEEeecCCCCcccCChHHHhhcccccEEeEecccccccc
Q 002133 834 LRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMI 874 (961)
Q Consensus 834 L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i 874 (961)
|+.|.+..|...+...-......+..++.+++.+|+.+...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 66666766655444321111111455566666666544433
No 203
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.81 E-value=0.00048 Score=68.59 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=13.4
Q ss_pred CcCcCCCccEEEeecCCCCccc
Q 002133 827 DNRSFTNLRIINIEQCHRLKHL 848 (961)
Q Consensus 827 ~~~~l~~L~~L~l~~c~~L~~l 848 (961)
..+.+|-|..|.+.++ .++..
T Consensus 298 e~~~~p~L~~le~ngN-r~~E~ 318 (388)
T COG5238 298 EQDAVPLLVDLERNGN-RIKEL 318 (388)
T ss_pred hhcccHHHHHHHHccC-cchhH
Confidence 3467777887777763 45444
No 204
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.018 Score=65.64 Aligned_cols=98 Identities=24% Similarity=0.373 Sum_probs=62.5
Q ss_pred ccCCchHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 153 HFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
+=.|.++..++|++.+. +.+-++++.+|++|+|||++|+.++.....+ | +-+++..-.|..++-.-=-.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhccccee
Confidence 33588999999999885 3456799999999999999999999988743 4 34555555554443111000
Q ss_pred HhCCCccCCCCHHHHHHHHHHHHHc--CCcEEEEEcccccc
Q 002133 227 QLGLEIVRPDSLVEKANQLRQALKK--KKRVLVILDDIWTQ 265 (961)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~ 265 (961)
..| ..-.++.+.|+. -..-|+.||.|+..
T Consensus 487 YVG----------AMPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 487 YVG----------AMPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred eec----------cCChHHHHHHHhhCCCCceEEeehhhhh
Confidence 011 011234444542 24578889988643
No 205
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.76 E-value=0.077 Score=57.98 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=120.2
Q ss_pred chHHHHHHHHHhccCCccEEEEEcCCCCcHHHHH-HHHHHHHhhcCCCCEEEEEEecCC---CCHHHHHHHHHHHhCCCc
Q 002133 157 RNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLV-KVVARQVVKEDLFDVVVDAEVTHT---PDWKEICGRIADQLGLEI 232 (961)
Q Consensus 157 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~ 232 (961)
|.+.+++|..||....-..|.|.||-|.||+.|+ .++..+.+ .+..+++.+- .+-..+++.++.++|.-.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999998877789999999999999999 66665432 2566666432 234455555555553221
Q ss_pred -----------------------cC-CCCHHHHHHHHHHH----HHc-------------------------CCcEEEEE
Q 002133 233 -----------------------VR-PDSLVEKANQLRQA----LKK-------------------------KKRVLVIL 259 (961)
Q Consensus 233 -----------------------~~-~~~~~~~~~~l~~~----l~~-------------------------~kr~LlVl 259 (961)
.+ ..+.+..+..+.+. |++ .+|=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 00 01222222221111 110 12678999
Q ss_pred cccccc-----------cccccccCCCCCCCcccccCCCceEEEEEecchhhhh---hcC--CCCceEEccCCCHHHHHH
Q 002133 260 DDIWTQ-----------INLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLR---INM--SNPRIFSISTLADGEAKS 323 (961)
Q Consensus 260 Ddv~~~-----------~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~---~~~--~~~~~~~l~~L~~~~s~~ 323 (961)
|+.-.. .+|.... ...+=-.||++|-+..... ..+ ...+.+.+...+.+.|.+
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~L-----------v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASL-----------VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHH-----------HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 998543 2343321 1334446888887654431 122 234578999999999999
Q ss_pred HHHHHhCCCCCC-------------------CchhHHHHHHHHhhCCchHHHHHHHHHhc-cCCh
Q 002133 324 LFEKIVGDSAKE-------------------SDCRAIGVEIVGKCGGLPIAVSTIANALK-GQST 368 (961)
Q Consensus 324 Lf~~~~~~~~~~-------------------~~~~~~~~~i~~~c~glPLai~~~~~~L~-~~~~ 368 (961)
+...+....... .....-....++.+||=-.-+..+++.++ +.++
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 999888532110 11223346788889999999999999998 5544
No 206
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.75 E-value=0.0096 Score=61.44 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=56.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCc---------cCCCCH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKED----LFDVVVDAEVTHTPDWKEICGRIADQLGLEI---------VRPDSL 238 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 238 (961)
.-.++.|+|.+|+|||++|.+++......+ .=..++|++....++..++. ++....+... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 356899999999999999999987654221 01567899988777765543 3333322211 111233
Q ss_pred HHHHHHHHHHHH---cCCcEEEEEccccc
Q 002133 239 VEKANQLRQALK---KKKRVLVILDDIWT 264 (961)
Q Consensus 239 ~~~~~~l~~~l~---~~kr~LlVlDdv~~ 264 (961)
++....+.+... ..+.-+||+|.+..
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 444444443332 34556899998754
No 207
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.72 E-value=0.018 Score=57.40 Aligned_cols=154 Identities=16% Similarity=0.211 Sum_probs=91.8
Q ss_pred ccccCCchHHH---HHHHHHhccC------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHH
Q 002133 151 YVHFPSRNPVF---QKMMESLRDS------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (961)
Q Consensus 151 ~~~~~gr~~~~---~~l~~~l~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (961)
.++++|.++.. .-|++.|.++ ..+-|..+|++|.|||.+|+++++..++- | +.+.. .+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vka----t~-- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKA----TE-- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEech----HH--
Confidence 46778988764 3466777643 36789999999999999999999876642 2 22211 12
Q ss_pred HHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--------------ccccccCCCCCCCcccccCCC
Q 002133 222 GRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--------------NLDDIGIPFWDGEKQSVDNQG 287 (961)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------------~~~~l~~~~~~~~~~~~~~~~ 287 (961)
-|.+..| +....+.++.+.-++--++.+.+|.++-.. ..+++... ......+.
T Consensus 187 -liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTe-----lDgi~ene 253 (368)
T COG1223 187 -LIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTE-----LDGIKENE 253 (368)
T ss_pred -HHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHh-----ccCcccCC
Confidence 2333333 344556666666665678999999876431 01111111 11122455
Q ss_pred ceEEEEEecchhhhhhcCCC--CceEEccCCCHHHHHHHHHHHhC
Q 002133 288 RWTLLLASRDQHVLRINMSN--PRIFSISTLADGEAKSLFEKIVG 330 (961)
Q Consensus 288 gs~IlvTtR~~~v~~~~~~~--~~~~~l~~L~~~~s~~Lf~~~~~ 330 (961)
|..-|-.|............ ...++..--+++|-.+++..++.
T Consensus 254 GVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred ceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 66556666555544322222 23456666678888888888774
No 208
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.67 E-value=0.01 Score=72.20 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=60.0
Q ss_pred cccCCchHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLRD-------S--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (961)
..++|.++.++.+.+.+.. . ...++.++|+.|+|||++|+.++.... ...+.++.+...+...+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~~-- 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHTV-- 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcccH--
Confidence 3467888888888777751 1 123578999999999999999998763 23456665543221111
Q ss_pred HHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
...+|....-. . .+....+.+.++....-+|+||+++..
T Consensus 527 --~~lig~~~gyv-g-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 527 --SRLIGAPPGYV-G-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred --HHHhcCCCCCc-c-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11122111100 0 011223444554445679999999765
No 209
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.046 Score=61.21 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=61.7
Q ss_pred ccccCCchHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHH
Q 002133 151 YVHFPSRNPVFQKMMESLR---D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWK 218 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 218 (961)
+.++-|.++.+.++++++. . ...+=|.++|++|+|||.||+++++...+- ++.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 5667788888887777664 1 224557899999999999999999988753 3344332
Q ss_pred HHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 219 EICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 219 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
+|+....+ ..++.+.++.+.-.+.-++++++|+++-.
T Consensus 258 ----eivSGvSG------ESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGVSG------ESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ----hhhcccCc------ccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 23322221 22334455555555557899999998643
No 210
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.029 Score=61.57 Aligned_cols=152 Identities=20% Similarity=0.277 Sum_probs=87.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH-
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK- 250 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 250 (961)
....+.+.|++|+|||+||..++..- .|..+--++ . +++ .|. +.......+.....
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiS---p---e~m-------iG~------sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIIS---P---EDM-------IGL------SESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeC---h---HHc-------cCc------cHHHHHHHHHHHHHH
Confidence 34567789999999999999998763 365332221 1 111 111 12222222333222
Q ss_pred --cCCcEEEEEcccccccccccccCCCCCCCccc--------ccCCCceEEEEEecchhhhhhcCC----CCceEEccCC
Q 002133 251 --KKKRVLVILDDIWTQINLDDIGIPFWDGEKQS--------VDNQGRWTLLLASRDQHVLRINMS----NPRIFSISTL 316 (961)
Q Consensus 251 --~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~--------~~~~~gs~IlvTtR~~~v~~~~~~----~~~~~~l~~L 316 (961)
+..--.||+||+...-+|-.++..|.....+. -+.+..--|+-||....+... |+ -...|.++.+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCcc
Confidence 13457899999999999988877765433222 123344446667777666622 22 1347888888
Q ss_pred CH-HHHHHHHHHHhCCCCCCCchhHHHHHHHHhh
Q 002133 317 AD-GEAKSLFEKIVGDSAKESDCRAIGVEIVGKC 349 (961)
Q Consensus 317 ~~-~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c 349 (961)
+. ++..+.+...- ...+.+.+.++.+.+.+|
T Consensus 673 ~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 77 67777666532 222344455666666666
No 211
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.025 Score=61.99 Aligned_cols=132 Identities=16% Similarity=0.191 Sum_probs=81.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
....+.|+|..|.|||.|++++.+.......=..+++++ ......+++..+. .......++.. +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~---------~~~~~~Fk~~y-~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALR---------DNEMEKFKEKY-S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHH---------hhhHHHHHHhh-c
Confidence 367899999999999999999999887532212344443 2334444443332 12334555555 3
Q ss_pred CCcEEEEEccccccccc---cc-c---cCCCCCCCcccccCCCceEEEEEecchhhh--------hhcCCCCceEEccCC
Q 002133 252 KKRVLVILDDIWTQINL---DD-I---GIPFWDGEKQSVDNQGRWTLLLASRDQHVL--------RINMSNPRIFSISTL 316 (961)
Q Consensus 252 ~kr~LlVlDdv~~~~~~---~~-l---~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~--------~~~~~~~~~~~l~~L 316 (961)
-=++++||++-.... +. + ...+. ..|-.||+|++...-. ...+...-++++.+.
T Consensus 176 --~dlllIDDiq~l~gk~~~qeefFh~FN~l~---------~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~P 244 (408)
T COG0593 176 --LDLLLIDDIQFLAGKERTQEEFFHTFNALL---------ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPP 244 (408)
T ss_pred --cCeeeechHhHhcCChhHHHHHHHHHHHHH---------hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCC
Confidence 248899999764222 11 1 12221 2233799998653221 122455578999999
Q ss_pred CHHHHHHHHHHHhC
Q 002133 317 ADGEAKSLFEKIVG 330 (961)
Q Consensus 317 ~~~~s~~Lf~~~~~ 330 (961)
+.+.....+.+.+.
T Consensus 245 d~e~r~aiL~kka~ 258 (408)
T COG0593 245 DDETRLAILRKKAE 258 (408)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999775
No 212
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.64 E-value=0.051 Score=66.46 Aligned_cols=176 Identities=16% Similarity=0.210 Sum_probs=96.2
Q ss_pred CccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 150 GYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
...++.|.+...+.+.+.+. -...+-+.++|++|+|||++|+++++.... .| +.+..
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~f-----i~v~~--- 520 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--NF-----IAVRG--- 520 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE-----EEEeh---
Confidence 34556677776666655442 123445889999999999999999987652 22 22221
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc--------------ccccCCCCCCCccc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL--------------DDIGIPFWDGEKQS 282 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~--------------~~l~~~~~~~~~~~ 282 (961)
.+++.. ..| .....+..+.+..+...+.+|++|+++....- ..+...+ + .
T Consensus 521 -~~l~~~---~vG-------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~l-d----g 584 (733)
T TIGR01243 521 -PEILSK---WVG-------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEM-D----G 584 (733)
T ss_pred -HHHhhc---ccC-------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHh-h----c
Confidence 111111 011 12233445555444556799999998653110 0010000 0 0
Q ss_pred ccCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 283 VDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 283 ~~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
+....+.-||.||.......... .-...+.+...+.++-.++|..+........+. -...+++.+.|.-
T Consensus 585 ~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 585 IQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred ccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 11234555666775554332111 234578888899999999998766533222221 1345777777764
No 213
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.63 E-value=0.0056 Score=63.66 Aligned_cols=92 Identities=22% Similarity=0.228 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCEEEEEEecCCCCHHHHHHHHHHHhCCCccC---------CCC-
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVDAEVTHTPDWKEICGRIADQLGLEIVR---------PDS- 237 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~- 237 (961)
.-.++.|+|.+|+|||++|.+++........ -..++|++....++..++. ++++..+..... ..+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 3468999999999999999999865332211 3578999988877765543 344443322110 011
Q ss_pred --HHHHHHHHHHHHHcC-CcEEEEEccccc
Q 002133 238 --LVEKANQLRQALKKK-KRVLVILDDIWT 264 (961)
Q Consensus 238 --~~~~~~~l~~~l~~~-kr~LlVlDdv~~ 264 (961)
.......+.+.+.+. +--+||+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 223345555556555 678899998754
No 214
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.60 E-value=0.0093 Score=63.67 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=59.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc-----CCCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 246 (961)
.-+++-|+|++|+||||||.+++...... -..++|++..+.++.. .+++++.+.. .....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45689999999999999999988776533 3457799887766553 3455554321 2224455555555
Q ss_pred HHHHcCCcEEEEEcccccc
Q 002133 247 QALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~~~ 265 (961)
..++++.--+||+|.|...
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 5555556789999988643
No 215
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.0011 Score=66.41 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=48.3
Q ss_pred CCCceeEEEecCC--CCC-CCCccccCCcCCCEEEccCCCCCC---CccccCCCCCcEEEeccCcCCccc----hhhhcC
Q 002133 557 GMTELLVLHLTGI--HFP-SLPLSLGSLINLRTLSFDCCHLED---VARVGDLAKLEILSFRNSHIEQLP----EQIGNL 626 (961)
Q Consensus 557 ~l~~L~~L~L~~~--~~~-~lp~~~~~l~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp----~~~~~l 626 (961)
.+++|+.|.++.| ++. .++.....+++|++|++++|++.. +..+..+.+|..|++.+|..+.+- ..+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 3555666666666 222 343334455666666666666554 345556667777777777666542 125567
Q ss_pred CCcCEEecCCC
Q 002133 627 TRLKLLDLSNC 637 (961)
Q Consensus 627 ~~L~~L~l~~~ 637 (961)
++|.+|+-..+
T Consensus 143 ~~L~~LD~~dv 153 (260)
T KOG2739|consen 143 PSLKYLDGCDV 153 (260)
T ss_pred hhhcccccccc
Confidence 78888876664
No 216
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.015 Score=65.77 Aligned_cols=190 Identities=13% Similarity=0.200 Sum_probs=107.6
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
..+.+++|.+.....|...+...+. .--...|+-|+||||+|+-++...--... ....+...-...+.|...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEG 85 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcC
Confidence 3466789999999999998876553 45578999999999999999987643211 001111111222233222
Q ss_pred hCCCccCC----CCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEE-Eec
Q 002133 228 LGLEIVRP----DSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLL-ASR 296 (961)
Q Consensus 228 l~~~~~~~----~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~Ilv-TtR 296 (961)
-..+.... ....+.+.++.+... .++-=..|+|+|.-. ..|+.+...+-. --.....|+ ||-
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-------PP~hV~FIlATTe 158 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-------PPSHVKFILATTE 158 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-------CccCeEEEEecCC
Confidence 11111110 011223334444432 234456789999654 456665444432 233455444 444
Q ss_pred chhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 297 DQHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 297 ~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
.+.+...-......|.++.++.++-...+...+..+....+ .+...-|++...|..
T Consensus 159 ~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 159 PQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSL 214 (515)
T ss_pred cCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCCh
Confidence 44444333444568999999999999888888764433332 233455666666644
No 217
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.57 E-value=0.0035 Score=67.32 Aligned_cols=47 Identities=19% Similarity=0.387 Sum_probs=41.0
Q ss_pred ccCCchHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 153 HFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.++|.++.++++++++. ....+++.++|++|+||||||..+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 68999999999999986 234578999999999999999999998754
No 218
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00019 Score=71.68 Aligned_cols=107 Identities=27% Similarity=0.370 Sum_probs=81.0
Q ss_pred CCcCCCEEEccCCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccCh-HHHhcCccCCEEE
Q 002133 580 SLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKP-EVISRLSRLNELY 658 (961)
Q Consensus 580 ~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~ 658 (961)
.+.+.+.|++.||.++++....+++.|+.|.|+-|.|+.+.. +..|++|++|+|.. |.+.++.. .-+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence 366788899999999999999999999999999999999864 78999999999999 67776643 2367899999999
Q ss_pred ccCCCCccccCCCccchHhhcCCCCCCEEEc
Q 002133 659 MGNSFTRKVEGQSNASVVELKQLSSLTILDM 689 (961)
Q Consensus 659 l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 689 (961)
|..|....-.| ......-+.-|++|+.|+-
T Consensus 95 L~ENPCc~~ag-~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 95 LDENPCCGEAG-QNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hccCCcccccc-hhHHHHHHHHcccchhccC
Confidence 98875332221 1122234555666666654
No 219
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0093 Score=70.17 Aligned_cols=168 Identities=15% Similarity=0.152 Sum_probs=97.2
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC----EEEEEEecCCCCHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD----VVVDAEVTHTPDWKEICGRI 224 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i 224 (961)
...++++||++++.++++.|....-.--.++|.+|+|||++|--++.+.....-.. ..++. -++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------LD~ 234 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------LDL 234 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------ecH
Confidence 34678899999999999999744333345899999999999999998875432111 11111 011
Q ss_pred HHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccccc-c--CCCCCCCcccccCCCceEEEEEecchhhh
Q 002133 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDI-G--IPFWDGEKQSVDNQGRWTLLLASRDQHVL 301 (961)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l-~--~~~~~~~~~~~~~~~gs~IlvTtR~~~v~ 301 (961)
..-..+..... +.++....+.+.+.+.++..|.+|.+.+.-.-..- + .....-.++.+..+.--.|-.||-++..-
T Consensus 235 g~LvAGakyRG-eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk 313 (786)
T COG0542 235 GSLVAGAKYRG-EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRK 313 (786)
T ss_pred HHHhccccccC-cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHH
Confidence 11111111122 55666677777776656899999998765211110 0 00000011122234344466677654431
Q ss_pred -----hhcCCCCceEEccCCCHHHHHHHHHHHh
Q 002133 302 -----RINMSNPRIFSISTLADGEAKSLFEKIV 329 (961)
Q Consensus 302 -----~~~~~~~~~~~l~~L~~~~s~~Lf~~~~ 329 (961)
.......+.+.+..-+.+++...++...
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 0012334578899999999999987644
No 220
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.059 Score=58.59 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=92.9
Q ss_pred HHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc--------------------CCCCEEEEEEecCCCCHH
Q 002133 160 VFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKE--------------------DLFDVVVDAEVTHTPDWK 218 (961)
Q Consensus 160 ~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~~~~~~~~ 218 (961)
.-+++.+.+..+++ ..+.+.|+.|+||+++|.+++...--. .|.|. .++.-...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~---- 84 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG---- 84 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc----
Confidence 45667777765554 567899999999999999998876321 12221 11110000
Q ss_pred HHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEE
Q 002133 219 EICGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLL 292 (961)
Q Consensus 219 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~Il 292 (961)
...-..+.+..+.+.+. .+++-.+|+|+++.. ...+.+...+-+ -.+++.+|
T Consensus 85 ---------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fi 142 (334)
T PRK07993 85 ---------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-------PPENTWFF 142 (334)
T ss_pred ---------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-------CCCCeEEE
Confidence 00011222333444332 246678899998765 233333333322 23455555
Q ss_pred EEecc-hhhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHH
Q 002133 293 LASRD-QHVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVS 357 (961)
Q Consensus 293 vTtR~-~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 357 (961)
.+|.+ ..+...-......+.+.+++.+++.+.+....+ .+ .+.+..+++.++|.|..+.
T Consensus 143 L~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~---~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 143 LACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT---MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred EEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC---CC---HHHHHHHHHHcCCCHHHHH
Confidence 55554 444422122334789999999999887765321 11 1235678999999996443
No 221
>PRK07261 topology modulation protein; Provisional
Probab=96.53 E-value=0.0044 Score=60.47 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-CCCCEEEE
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKE-DLFDVVVD 208 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 208 (961)
.|.|+|++|+||||||+++....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998775432 23455555
No 222
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.53 E-value=0.011 Score=63.29 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=58.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc-----CCCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 246 (961)
.-+++-|+|++|+||||||.+++...... -..++|++....++.. .++.++.+.. ...+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 45688999999999999999988776533 3467899988776653 3444444321 1224455555555
Q ss_pred HHHHcCCcEEEEEccccc
Q 002133 247 QALKKKKRVLVILDDIWT 264 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~~ 264 (961)
..++++.--+||+|.|-.
T Consensus 127 ~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHhccCCCEEEEcchHh
Confidence 555556678999998754
No 223
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.51 E-value=0.015 Score=61.83 Aligned_cols=87 Identities=24% Similarity=0.211 Sum_probs=51.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc-CCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKE-DLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQAL 249 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 249 (961)
..++++|+|++|+||||++..++.....+ +.+ .+..++.... ....+.+....+.++.+.....+..+. ....+.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l-~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKEL-RKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHH-HHHHHHc
Confidence 45689999999999999999999877643 223 3455554432 223444455556666655443333333 3333333
Q ss_pred HcCCcEEEEEccc
Q 002133 250 KKKKRVLVILDDI 262 (961)
Q Consensus 250 ~~~kr~LlVlDdv 262 (961)
. ..=+|++|..
T Consensus 271 ~--~~d~vliDt~ 281 (282)
T TIGR03499 271 R--DKDLILIDTA 281 (282)
T ss_pred c--CCCEEEEeCC
Confidence 2 3457788853
No 224
>PRK12377 putative replication protein; Provisional
Probab=96.51 E-value=0.0098 Score=61.36 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=47.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
....+.++|..|+|||+||.++++....+ ...++++++. +++..+-...... . . ...+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~---~-~----~~~~l~~l~- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG---Q-S----GEKFLQELC- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc---c-h----HHHHHHHhc-
Confidence 34678999999999999999999998744 2334666543 4444444333110 0 1 123444443
Q ss_pred CCcEEEEEccccc
Q 002133 252 KKRVLVILDDIWT 264 (961)
Q Consensus 252 ~kr~LlVlDdv~~ 264 (961)
+--||||||+..
T Consensus 163 -~~dLLiIDDlg~ 174 (248)
T PRK12377 163 -KVDLLVLDEIGI 174 (248)
T ss_pred -CCCEEEEcCCCC
Confidence 457999999944
No 225
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.50 E-value=0.089 Score=56.42 Aligned_cols=91 Identities=23% Similarity=0.305 Sum_probs=56.1
Q ss_pred CchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 002133 156 SRNPVFQKMMESLRD----SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLE 231 (961)
Q Consensus 156 gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 231 (961)
+|........+++.. ...+-+.++|..|+|||.||.++++....+ .+. +.++++ .+++.++....+-.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCC-EEEEEH------HHHHHHHHHHHhcC
Confidence 455555555555542 234678999999999999999999998743 333 455544 34555555444211
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 232 IVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 232 ~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
+ .....+.+. +-=||||||+..+
T Consensus 207 -----~----~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 207 -----S----VKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred -----c----HHHHHHHhc--CCCEEEEecCCCc
Confidence 1 123333343 4578999999644
No 226
>PRK09354 recA recombinase A; Provisional
Probab=96.50 E-value=0.012 Score=63.42 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=60.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc-----CCCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 246 (961)
.-+++-|+|+.|+||||||.+++...... -..++|++....++.. .++.+|.+.. ...+.++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45689999999999999999998776533 3567899988877753 3455554421 2234455555555
Q ss_pred HHHHcCCcEEEEEccccc
Q 002133 247 QALKKKKRVLVILDDIWT 264 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~~ 264 (961)
..+++++--+||+|-|-.
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 555666678999998864
No 227
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.045 Score=64.58 Aligned_cols=105 Identities=19% Similarity=0.320 Sum_probs=62.6
Q ss_pred cccCCchHHHHHHHHHhc-------cC--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLR-------DS--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (961)
..++|.++.+..+.+.+. ++ ...+...+|+.|+|||.||++++...-.. =+..+-++.|....-..+-+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkHsVSr 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKHSVSR 568 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHHHHHH
Confidence 347899999999988876 22 23466779999999999999999875311 14556666665432222221
Q ss_pred HHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcE-EEEEcccccc
Q 002133 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRV-LVILDDIWTQ 265 (961)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv~~~ 265 (961)
- .|.+..-. ..++ -..+-+..++ ++| +|.||+|...
T Consensus 569 L----IGaPPGYV-Gyee-GG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 569 L----IGAPPGYV-GYEE-GGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred H----hCCCCCCc-eecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence 1 22221100 0000 1235555554 545 7888999765
No 228
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.015 Score=63.40 Aligned_cols=88 Identities=22% Similarity=0.161 Sum_probs=55.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
-.+++++|+.|+||||++.+++.....+.....+..++... .....+-++...+.++.+.....+..+....+ ..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELR- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhc-
Confidence 46899999999999999999998865332223455555433 23456667777777777654432333333223 3333
Q ss_pred CCcEEEEEcccc
Q 002133 252 KKRVLVILDDIW 263 (961)
Q Consensus 252 ~kr~LlVlDdv~ 263 (961)
++-+|++|..-
T Consensus 215 -~~DlVLIDTaG 225 (374)
T PRK14722 215 -NKHMVLIDTIG 225 (374)
T ss_pred -CCCEEEEcCCC
Confidence 34667799874
No 229
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.093 Score=56.92 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=54.6
Q ss_pred CCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceE-EEEEecchhhhhhcCCCCceEEccCCCHHHHHHHHHHH
Q 002133 252 KKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWT-LLLASRDQHVLRINMSNPRIFSISTLADGEAKSLFEKI 328 (961)
Q Consensus 252 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~-IlvTtR~~~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 328 (961)
+++-++|+|+++.. ...+.+...+-+ -.+++. |++|++...+...-......+.+.+++.++..+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEE-------PPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcC-------CCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 45567889998765 334444333322 234454 45555545554322233468999999999999888764
Q ss_pred hCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 329 VGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
+ . ++ ...++..++|.|+.+..+
T Consensus 204 -~--~--~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 204 -G--V--AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -C--C--Ch----HHHHHHHcCCCHHHHHHH
Confidence 1 1 11 123577889999755433
No 230
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.43 E-value=0.0027 Score=58.11 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+|+|+|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998763
No 231
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.37 E-value=0.007 Score=68.96 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=55.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
.-++..++|++|+||||||.-++++.. | .++=|++|+..+...+-..|...+....... ..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~--------------ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD--------------AD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc--------------cC
Confidence 457899999999999999999998754 3 3678899998888888777776654332211 12
Q ss_pred CCcEEEEEcccccc
Q 002133 252 KKRVLVILDDIWTQ 265 (961)
Q Consensus 252 ~kr~LlVlDdv~~~ 265 (961)
+++.-||+|.++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 46778899988765
No 232
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.033 Score=60.39 Aligned_cols=90 Identities=21% Similarity=0.225 Sum_probs=52.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (961)
..++|+++|++|+||||++..++.....++ + .+..++.... ....+-++...+.++.+.....+.......+ +.+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G-k-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL-~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-K-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL-TYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC-C-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHH-HHHH
Confidence 457999999999999999999998776432 2 3344544322 2233444555556666654333444443333 3333
Q ss_pred c-CCcEEEEEccccc
Q 002133 251 K-KKRVLVILDDIWT 264 (961)
Q Consensus 251 ~-~kr~LlVlDdv~~ 264 (961)
. .+.=+|++|-.-.
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 2 1235678886643
No 233
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.42 Score=47.80 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=36.8
Q ss_pred ccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 151 YVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..++-|-+..++++++.+. -...+-+..+|++|.|||-+|++.+..-.
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 4556678888888888764 12345678999999999999999886644
No 234
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.33 E-value=0.039 Score=67.41 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=92.7
Q ss_pred CccccCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 150 GYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
...++.|.++.++++.+.+.- ...+-+.++|++|+|||++|+.+++.... .| +.++.+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~--~~---i~i~~~---- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA--YF---ISINGP---- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC--eE---EEEecH----
Confidence 345678999888887776531 22356889999999999999999987642 12 223221
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc-------------ccccCCCCCCCcccc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL-------------DDIGIPFWDGEKQSV 283 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~-------------~~l~~~~~~~~~~~~ 283 (961)
++... . .. .....+..+.+........+|+||+++....- ..+...+ + .+
T Consensus 247 --~i~~~----~----~g--~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~l-d----~l 309 (733)
T TIGR01243 247 --EIMSK----Y----YG--ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLM-D----GL 309 (733)
T ss_pred --HHhcc----c----cc--HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHh-h----cc
Confidence 11100 0 00 11222333444333345689999998653110 0010000 0 00
Q ss_pred cCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHH
Q 002133 284 DNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIA 355 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 355 (961)
.......||.||....-..... .-...+.+...+.++-.+++..+........+ .....+++.+.|.--|
T Consensus 310 ~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 310 KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVGA 383 (733)
T ss_pred ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCHH
Confidence 1222333333554332111111 11346778888888888888866543222111 1245678888886543
No 235
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.32 E-value=0.014 Score=60.11 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=36.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEI 220 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 220 (961)
.-.++.|+|.+|+|||++|.+++...... -..++|++.. .++..++
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 35689999999999999999999877543 4578899887 5555443
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.021 Score=59.40 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=50.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
+..-+.++|.+|+|||.||.++.+... +..+ .+.+++ ..++..++...... .....++.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhh-
Confidence 666789999999999999999999988 3323 344553 45566666655432 112234455444
Q ss_pred CCcEEEEEcccccc
Q 002133 252 KKRVLVILDDIWTQ 265 (961)
Q Consensus 252 ~kr~LlVlDdv~~~ 265 (961)
+-=||||||+-..
T Consensus 167 -~~dlLIiDDlG~~ 179 (254)
T COG1484 167 -KVDLLIIDDIGYE 179 (254)
T ss_pred -cCCEEEEecccCc
Confidence 3468999998553
No 237
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.29 E-value=0.023 Score=58.45 Aligned_cols=89 Identities=19% Similarity=0.306 Sum_probs=52.7
Q ss_pred HHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCC
Q 002133 160 VFQKMMESLRD--SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDS 237 (961)
Q Consensus 160 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 237 (961)
.+..+.+...+ .....+.++|.+|+|||+||.++++....++ ..+++++ ..+++..+-.... . ..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it------~~~l~~~l~~~~~-~--~~-- 150 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIIT------VADIMSAMKDTFS-N--SE-- 150 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEE------HHHHHHHHHHHHh-h--cc--
Confidence 44444444432 2345788999999999999999999876532 3455554 3455555444332 1 01
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 238 LVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 238 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
.....+.+.+. +.=+|||||+...
T Consensus 151 --~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 --TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred --ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11223444454 3458899999654
No 238
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.29 E-value=0.016 Score=62.17 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=58.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCC---------CCH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKE----DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRP---------DSL 238 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---------~~~ 238 (961)
.-+++-|+|++|+|||+++.+++-..... ..=..++|++....++.+++. ++++.++.+.... .+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 45688999999999999999887543211 112468999999988888874 4667766543211 122
Q ss_pred HH---HHHHHHHHHHcCCcEEEEEccccc
Q 002133 239 VE---KANQLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 239 ~~---~~~~l~~~l~~~kr~LlVlDdv~~ 264 (961)
++ .+..+...+...+--|||+|.+..
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 22 233344444444556789997753
No 239
>PRK04132 replication factor C small subunit; Provisional
Probab=96.26 E-value=0.065 Score=64.66 Aligned_cols=152 Identities=12% Similarity=0.055 Sum_probs=88.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhC-CCccCCCCHHHHHHHHHHHHHcCCcEEEEE
Q 002133 181 MGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLG-LEIVRPDSLVEKANQLRQALKKKKRVLVIL 259 (961)
Q Consensus 181 ~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~~~kr~LlVl 259 (961)
|.++||||+|..+++..-....-...+-++.++..+...+ +++++.+. .... ...+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~----------------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKPI----------------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc----------------CCCCCEEEEE
Confidence 8899999999999988632111123567777776555443 33333221 1100 0124579999
Q ss_pred ccccccc--ccccccCCCCCCCcccccCCCceEEEEEecch-hhhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCC
Q 002133 260 DDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ-HVLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKES 336 (961)
Q Consensus 260 Ddv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~ 336 (961)
|+++... +.+.+...+-. -...+++|.+|.+. .+...-......+.+.+++.++-...+.+.+..+...-
T Consensus 637 DEaD~Lt~~AQnALLk~lEe-------p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEM-------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred ECcccCCHHHHHHHHHHhhC-------CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 9998763 33333222211 12355655555443 33222223346899999999999888887765322111
Q ss_pred chhHHHHHHHHhhCCchHHHH
Q 002133 337 DCRAIGVEIVGKCGGLPIAVS 357 (961)
Q Consensus 337 ~~~~~~~~i~~~c~glPLai~ 357 (961)
+ .+....|++.++|-+..+.
T Consensus 710 ~-~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 T-EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred C-HHHHHHHHHHcCCCHHHHH
Confidence 1 3466789999999885443
No 240
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.21 E-value=0.0073 Score=74.05 Aligned_cols=106 Identities=17% Similarity=0.243 Sum_probs=60.0
Q ss_pred cccCCchHHHHHHHHHhc-------cC--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLR-------DS--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (961)
..++|.++.++.+.+.+. ++ ...++.++|+.|+|||.+|+.++...-.. ....+-++++...+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~~~--- 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEAHT--- 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhhhh---
Confidence 457899999999888874 11 23468899999999999999998875321 22233334333211111
Q ss_pred HHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
+.+-+|.+..-. .. +.-..+.+.+++...-+|+||++...
T Consensus 641 -~~~l~g~~~gyv-g~-~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 641 -VSRLKGSPPGYV-GY-GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred -hccccCCCCCcc-cc-cccchHHHHHHhCCCcEEEEechhhc
Confidence 111112111100 00 01112444555556789999999754
No 241
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.20 E-value=0.0096 Score=55.10 Aligned_cols=56 Identities=16% Similarity=0.305 Sum_probs=19.3
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEcc
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFD 590 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~ 590 (961)
++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +..++. .+.++++|+.+.+.
T Consensus 10 ~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 10 NCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344445444432 221 344444445545555555443 333322 23444444444443
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.19 E-value=0.029 Score=54.26 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
++.|+|.+|+||||++..+...... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 3689999999999999999988764 245677887766543
No 243
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.19 E-value=0.067 Score=56.36 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=35.4
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHH
Q 002133 160 VFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (961)
Q Consensus 160 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (961)
.++++..++... .-|.+.|++|+|||++|+.++.... . ..+++++....+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg--~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD--R---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC--C---CEEEEeCCccCCHHHHh
Confidence 345555555332 3467999999999999999987542 1 23456666555555544
No 244
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.18 E-value=0.024 Score=63.49 Aligned_cols=88 Identities=25% Similarity=0.280 Sum_probs=53.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCccCC---CCHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRP---DSLVEKANQLRQ 247 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 247 (961)
...+|.++|.+|+||||.|..++.....++ + .+.-|++.. .+...+.++.+..+++.+.... .+....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 457899999999999999999998877543 3 333344332 1234555677777777654332 122233333334
Q ss_pred HHHcCCcEEEEEcccc
Q 002133 248 ALKKKKRVLVILDDIW 263 (961)
Q Consensus 248 ~l~~~kr~LlVlDdv~ 263 (961)
.... .-+||+|..-
T Consensus 172 ~~~~--~DvVIIDTAG 185 (437)
T PRK00771 172 KFKK--ADVIIVDTAG 185 (437)
T ss_pred Hhhc--CCEEEEECCC
Confidence 4332 2568888763
No 245
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.055 Score=55.10 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=62.3
Q ss_pred ccccCCchHHHHHHHHHhc----------cC--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHH
Q 002133 151 YVHFPSRNPVFQKMMESLR----------DS--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWK 218 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 218 (961)
..++-|-+...+.+.+... .. ..+-|.++|++|.||+-||++|+..... -|++||..
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSS---- 200 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSS---- 200 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehH----
Confidence 4455566666666665543 22 2567889999999999999999987552 23445442
Q ss_pred HHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 219 EICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 219 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
++..+.+ | ..+.++..+.+.-++.|+-.|.+|.|+..
T Consensus 201 DLvSKWm---G-------ESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 201 DLVSKWM---G-------ESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred HHHHHHh---c-------cHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 2322222 2 33556677777777789999999999753
No 246
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.15 Score=60.01 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=106.1
Q ss_pred ccccCCchH---HHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHH
Q 002133 151 YVHFPSRNP---VFQKMMESLRDS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWK 218 (961)
Q Consensus 151 ~~~~~gr~~---~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 218 (961)
+.++.|-++ ++.++++.|.++ -++=+.++|++|+|||-||++++....+- |++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 455667665 455666666532 13457899999999999999999876642 3444432
Q ss_pred HHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccccc---ccCCCCCC---------CcccccCC
Q 002133 219 EICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDD---IGIPFWDG---------EKQSVDNQ 286 (961)
Q Consensus 219 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~---l~~~~~~~---------~~~~~~~~ 286 (961)
++ .+.+.. -....++.+...-+...++.|.+|+++...--.. ....-.+. +...+...
T Consensus 379 EF----vE~~~g------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 EF----VEMFVG------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred HH----HHHhcc------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 11 111111 1123444555555556788999998865421110 00000000 00112233
Q ss_pred CceEEEEEecchhhhhhc-C---CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 287 GRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 287 ~gs~IlvTtR~~~v~~~~-~---~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
.+.-++-+|....+.+.. + .-.+.+.++.-+.....+.|.-++.......+..++.+ |+..--|.+=|.
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 455566667666655221 1 22346788888888899999999875544445556666 888888887554
No 247
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.15 E-value=0.045 Score=56.88 Aligned_cols=92 Identities=21% Similarity=0.250 Sum_probs=58.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCC------ccCCCCHH------
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLE------IVRPDSLV------ 239 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~------ 239 (961)
-..++|.|..|+||||||+++++..+.+ +-+.++++-+.+.. +..++..++...-..+ ....+...
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999999988753 23566777776654 5566666665432111 00111111
Q ss_pred HHHHHHHHHHH-c-CCcEEEEEcccccc
Q 002133 240 EKANQLRQALK-K-KKRVLVILDDIWTQ 265 (961)
Q Consensus 240 ~~~~~l~~~l~-~-~kr~LlVlDdv~~~ 265 (961)
...-.+-++++ + ++.+|+++||+..-
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 12223555664 3 78999999998543
No 248
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.14 E-value=0.014 Score=57.52 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=29.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE 210 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 210 (961)
...+|.++|+.|+||||+|+.++..... .+...++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEe
Confidence 4568999999999999999999998864 355555553
No 249
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.14 E-value=0.045 Score=60.09 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=77.9
Q ss_pred cCCchHHHHHHHHHhc-cCCccE-EEEEcCCCCcHHHHHHHHHHHHhhcC-------------------CCCEEEEEEec
Q 002133 154 FPSRNPVFQKMMESLR-DSNVNM-IGLYGMGGVGKTTLVKVVARQVVKED-------------------LFDVVVDAEVT 212 (961)
Q Consensus 154 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~ 212 (961)
++|-+....++..+.. ..+.+- +.++|+.|+||||+|..+++...... ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566777777777776 334444 99999999999999999999875322 11233444444
Q ss_pred CCCC---HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc--cccccCCCCCCCcccccCCC
Q 002133 213 HTPD---WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDIGIPFWDGEKQSVDNQG 287 (961)
Q Consensus 213 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~ 287 (961)
.... ..+..+++.+....... .++.-++++|+++.... -+.+....-. ...
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEe-------p~~ 138 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEE-------PPK 138 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhcc-------CCC
Confidence 4333 23334444443332211 14567889999987622 2222222222 345
Q ss_pred ceEEEEEecch-hhhhhcCCCCceEEccCCC
Q 002133 288 RWTLLLASRDQ-HVLRINMSNPRIFSISTLA 317 (961)
Q Consensus 288 gs~IlvTtR~~-~v~~~~~~~~~~~~l~~L~ 317 (961)
.+++|++|... .+...-......+++.+.+
T Consensus 139 ~~~~il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 139 NTRFILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred CeEEEEEcCChhhccchhhhcceeeecCCch
Confidence 56777777633 3322112223456666633
No 250
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.02 Score=58.97 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=48.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc--CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE--DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (961)
-|+|.++|++|.|||+|++++++...++ ..|....-+.+.. ..++.++...-|. -.....+++.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsESgK------lV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSESGK------LVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhhhh------HHHHHHHHHHHHHh
Confidence 4688999999999999999999988654 2232222333222 2344444332221 22334445555554
Q ss_pred cC-CcEEEEEcccccc
Q 002133 251 KK-KRVLVILDDIWTQ 265 (961)
Q Consensus 251 ~~-kr~LlVlDdv~~~ 265 (961)
.. -=+++.+|.|.+.
T Consensus 247 d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESL 262 (423)
T ss_pred CCCcEEEEEeHHHHHH
Confidence 32 3356667998654
No 251
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.09 E-value=0.0016 Score=76.16 Aligned_cols=123 Identities=22% Similarity=0.212 Sum_probs=53.4
Q ss_pred CccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChH
Q 002133 773 GFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSF 852 (961)
Q Consensus 773 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~ 852 (961)
.+++|+.|++++|..+...........+|+|+.|.+.+|..+++-....+ ...+++|++|++++|..+++-.-..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i-----~~~~~~L~~L~l~~c~~~~d~~l~~ 315 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI-----AERCPSLRELDLSGCHGLTDSGLEA 315 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH-----HHhcCcccEEeeecCccchHHHHHH
Confidence 34555566665554333322211122255566665555554333211111 1345556666666655553321112
Q ss_pred HHhhcccccEEeEeccc---cccccccccccCCccCCCccccccc--ccccceeccccccccccC
Q 002133 853 MAEKLLQLEELEVTDCK---ILRMIVGEETDNHDHENGSMRVVNF--NHLHSLALRRLPQLTSSG 912 (961)
Q Consensus 853 ~~~~l~~L~~L~l~~c~---~L~~i~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~c~~L~~i~ 912 (961)
...++++|+.|.+..+. .++...- ..+... ..+..+.+.+|++++.+.
T Consensus 316 ~~~~c~~l~~l~~~~~~~c~~l~~~~l------------~~~~~~~~d~~~~~~~~~~~~l~~~~ 368 (482)
T KOG1947|consen 316 LLKNCPNLRELKLLSLNGCPSLTDLSL------------SGLLTLTSDDLAELILRSCPKLTDLS 368 (482)
T ss_pred HHHhCcchhhhhhhhcCCCccHHHHHH------------HHhhccCchhHhHHHHhcCCCcchhh
Confidence 23345544444433332 2322210 001111 256667777777776654
No 252
>PRK06696 uridine kinase; Validated
Probab=96.09 E-value=0.0086 Score=61.46 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 156 SRNPVFQKMMESLR---DSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 156 gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.|.+.+++|.+.+. .....+|+|.|.+|+||||+|+.++.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46677778877775 456779999999999999999999988764
No 253
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.052 Score=61.87 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=80.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC--CCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT--PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
.-|.|.|+.|+|||+||+++++... +.+.-.+.+|+++.- ...+.+++.+... ..+.+.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v-----------------fse~~~- 492 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV-----------------FSEALW- 492 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH-----------------HHHHHh-
Confidence 4578999999999999999999887 344445566666543 2333433333221 122222
Q ss_pred CCcEEEEEccccccc--------ccccccCC---CC-CCCcccccCCCceEEEEEecchhhhhhcCCC----CceEEccC
Q 002133 252 KKRVLVILDDIWTQI--------NLDDIGIP---FW-DGEKQSVDNQGRWTLLLASRDQHVLRINMSN----PRIFSIST 315 (961)
Q Consensus 252 ~kr~LlVlDdv~~~~--------~~~~l~~~---~~-~~~~~~~~~~~gs~IlvTtR~~~v~~~~~~~----~~~~~l~~ 315 (961)
..+-+|||||++-.. +|...... +- +-+......+..-++|.|.....-....... .....+..
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 256899999986431 12110000 00 0000001122222455555544332111111 23567888
Q ss_pred CCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCc
Q 002133 316 LADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL 352 (961)
Q Consensus 316 L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 352 (961)
+...+--++++..............+ .-++.+|+|.
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~~~~dL-d~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDITMDDL-DFLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhhhhHHH-HHHHHhcCCc
Confidence 88877777766655332211112222 2377777765
No 254
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.04 E-value=0.028 Score=58.76 Aligned_cols=91 Identities=27% Similarity=0.288 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC---------CCCH-
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE----DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR---------PDSL- 238 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~- 238 (961)
-.+.-|+|.+|+|||+||.+++-..... +.=..++|++-...++..++. +|++..+.+... ..+.
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4588999999999999999987654321 122468999999999888774 566665443211 1122
Q ss_pred --HHHHHHHHHHHHcCCcEEEEEccccc
Q 002133 239 --VEKANQLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 239 --~~~~~~l~~~l~~~kr~LlVlDdv~~ 264 (961)
.+.+..+...+.+.+--|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 23333444444445667888897743
No 255
>PRK04296 thymidine kinase; Provisional
Probab=96.03 E-value=0.0072 Score=60.14 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=62.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC--CCCHHHHHHHHHHHHHc
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR--PDSLVEKANQLRQALKK 251 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 251 (961)
.++.|+|+.|.||||+|..++.+.... -..++.+. ..++.......+..+++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 467899999999999999999887643 22333331 1112222234456666644322 1233444444444 33
Q ss_pred CCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEEEecchh
Q 002133 252 KKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (961)
Q Consensus 252 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~ 299 (961)
++.-+||+|.+.-. ++..++...+ ...|..|++|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---------~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---------DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---------HHcCCeEEEEecCcc
Confidence 34458999998532 1122221111 235778999988854
No 256
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.02 E-value=0.32 Score=54.17 Aligned_cols=58 Identities=19% Similarity=0.144 Sum_probs=36.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLE 231 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 231 (961)
...+|.++|+.|+||||.|..++...+.++ + .+..|+... .+...+-++...+..+++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp 157 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCADTFRAGAFDQLKQNATKARIP 157 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcCcccchhHHHHHHHHhhccCCe
Confidence 457999999999999999999998776432 3 334444322 123333334444444443
No 257
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.055 Score=62.35 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=67.3
Q ss_pred cccCCccccCCchHHHHHHHHHhc---------cCC---ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC
Q 002133 146 FSVRGYVHFPSRNPVFQKMMESLR---------DSN---VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (961)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~---------~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (961)
.|....+++-|-++.+.+|.+-+. ..+ .+=|.++|++|.|||-+|++|+....- -|++|-.
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKG 738 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKG 738 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecC
Confidence 344556777788888888887764 222 345789999999999999999976542 3566655
Q ss_pred CCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
+ +++..-. | ..++.+.++.+.-++.+++.|.||.+++.
T Consensus 739 P----ELLNMYV---G-------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 739 P----ELLNMYV---G-------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred H----HHHHHHh---c-------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 3 2222221 2 22344566666666678999999998765
No 258
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.029 Score=61.66 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=48.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
..++.++|++|+||||+|.+++........+ .+.-++... .......++..++.++++.... .....+.+.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~----~~~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV----KDIKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh----HHHHHHHHHHHh
Confidence 4689999999999999999999765332223 223333222 2233445555566666644322 112344444443
Q ss_pred CCcEEEEEccc
Q 002133 252 KKRVLVILDDI 262 (961)
Q Consensus 252 ~kr~LlVlDdv 262 (961)
...-+||+|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 23355888843
No 259
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.97 E-value=0.016 Score=70.06 Aligned_cols=193 Identities=14% Similarity=0.174 Sum_probs=92.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH-hhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc---CCCCHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQV-VKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---RPDSLVEKANQLR 246 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 246 (961)
...++++|+|+.|.||||+.+.+.... ..+. -++|.+..... -..+.++...++.... ...+.......+.
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNIS 394 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHH
Confidence 345789999999999999999998662 1111 11121111000 0001111111110000 0001111222233
Q ss_pred HHHHc-CCcEEEEEcccccccccc---cccCCCCCCCcccccCCCceEEEEEecchhhhhhcCCCCce--EEccCCCHHH
Q 002133 247 QALKK-KKRVLVILDDIWTQINLD---DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINMSNPRI--FSISTLADGE 320 (961)
Q Consensus 247 ~~l~~-~kr~LlVlDdv~~~~~~~---~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~--~~l~~L~~~~ 320 (961)
..+.. .++-|+++|+.-...+.. .+...+-. .+ ...|+.+|+||....+.........+ ..+. ++.+
T Consensus 395 ~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe----~l-~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~- 467 (771)
T TIGR01069 395 AILSKTTENSLVLFDELGAGTDPDEGSALAISILE----YL-LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE- 467 (771)
T ss_pred HHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHH----HH-HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-
Confidence 33322 367899999986543211 11100000 00 23577899999998775332222221 1111 1111
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHhccCChHHHHHHHHHHHh
Q 002133 321 AKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAINWLRK 380 (961)
Q Consensus 321 s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~~l~~ 380 (961)
... |..+.-...+. ...|-.|++++ |+|-.+.--|..+.+.....+.+++..+..
T Consensus 468 ~l~-p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 468 TLS-PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCc-eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 000 00001011111 23577888877 799988888888876666677777776654
No 260
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.97 E-value=0.016 Score=53.58 Aligned_cols=106 Identities=19% Similarity=0.348 Sum_probs=66.6
Q ss_pred CChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCEEEccCCCCCCC--ccccCCCCCcEEEeccCcCCccchh-hhc
Q 002133 550 IPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLEDV--ARVGDLAKLEILSFRNSHIEQLPEQ-IGN 625 (961)
Q Consensus 550 ~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-~~~ 625 (961)
++...|.++++|+.+.+.. .+..++ ..|..+.+|+.+.+..+ +..+ ..+.++.+|+.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4566788999999999985 566674 45888889999999875 6663 6688888899999976 56666554 666
Q ss_pred CCCcCEEecCCCCCCcccChHHHhcCccCCEEEccC
Q 002133 626 LTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (961)
Q Consensus 626 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 661 (961)
+++|+.+++.. .+..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 89999999876 3667777777787 889888765
No 261
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.96 E-value=0.02 Score=70.53 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=60.5
Q ss_pred cccCCchHHHHHHHHHhcc-------CC--ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLRD-------SN--VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (961)
..++|.++.++.+.+.+.. .+ ..++.++|+.|+|||++|+.+++..-.. -...+-++.+...+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHHH
Confidence 4578999999998887751 12 2356789999999999999999875311 12344555554332222111
Q ss_pred HHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
.+|.+..-. .. +....+.+.++....-+++||+++..
T Consensus 587 ----l~g~~~gyv-g~-~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 587 ----LIGSPPGYV-GY-NEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred ----hcCCCCccc-Cc-CccchHHHHHHhCCCeEEEECChhhC
Confidence 112111000 00 01123445555444568899999765
No 262
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.95 E-value=0.015 Score=71.89 Aligned_cols=106 Identities=19% Similarity=0.327 Sum_probs=61.4
Q ss_pred cccCCchHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLRD-------S--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (961)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.++...... -...+.++++...+...+ .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~~-~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHSV-A 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccchH-H
Confidence 4578999999998888862 1 13467899999999999999999875422 233455555543221111 1
Q ss_pred HHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
.+ +|.+..-. ... ....+.+.++.....+|+||++...
T Consensus 642 ~l---~g~~~g~~-g~~-~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 642 RL---IGAPPGYV-GYE-EGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred Hh---cCCCCCcc-Ccc-cccHHHHHHHcCCCcEEEEeccccC
Confidence 11 12111100 000 0123444444434568999999765
No 263
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.95 E-value=0.068 Score=55.10 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=26.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
....+++|.|+.|.|||||++.+....+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 456799999999999999999999887653
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.011 Score=54.74 Aligned_cols=30 Identities=37% Similarity=0.480 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFD 204 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 204 (961)
--|.|.|++|+||||+++.+.+..+.++ |.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 3589999999999999999999988754 54
No 265
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.91 E-value=0.038 Score=60.06 Aligned_cols=58 Identities=26% Similarity=0.273 Sum_probs=42.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVDAEVTHTPDWKEICGRIADQLGL 230 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 230 (961)
.-.++-|+|++|+|||++|.+++........ =..++|++....++..++. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 4568899999999999999999876532111 1478999999988877764 44455554
No 266
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.90 E-value=0.045 Score=53.72 Aligned_cols=87 Identities=24% Similarity=0.247 Sum_probs=46.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCccC---CCCHHHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVR---PDSLVEKANQLRQALK 250 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~ 250 (961)
++.++|++|+||||++..++......+ + .++.++.... ....+.+....+..+.+... ..+..+...+..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g-~-~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG-K-KVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999998876432 2 2334443321 13334444445555543221 1233333333333332
Q ss_pred cCCcEEEEEcccc
Q 002133 251 KKKRVLVILDDIW 263 (961)
Q Consensus 251 ~~kr~LlVlDdv~ 263 (961)
.+..-++|+|..-
T Consensus 80 ~~~~d~viiDt~g 92 (173)
T cd03115 80 EENFDVVIVDTAG 92 (173)
T ss_pred hCCCCEEEEECcc
Confidence 3233356677654
No 267
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.89 E-value=0.04 Score=59.81 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=42.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKED----LFDVVVDAEVTHTPDWKEICGRIADQLGL 230 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 230 (961)
.-+++-|+|.+|+||||+|.+++....... .=..++||+....++..++. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 457889999999999999999987653210 11278999999888877754 45555554
No 268
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.88 E-value=0.036 Score=60.02 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=58.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh---c-CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC---------CCCH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK---E-DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR---------PDSL 238 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 238 (961)
.-+++-|+|.+|+|||+|+.+++-.... . +.-..++|++....|...++. ++++.++.+... ..+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCH
Confidence 4468889999999999999998754321 1 112468999999999988864 466666654321 1122
Q ss_pred HH---HHHHHHHHHHcCCcEEEEEccccc
Q 002133 239 VE---KANQLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 239 ~~---~~~~l~~~l~~~kr~LlVlDdv~~ 264 (961)
++ .+..+...+...+--|||+|.+-.
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 22 223333334334456788887643
No 269
>PRK08181 transposase; Validated
Probab=95.87 E-value=0.018 Score=60.22 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=46.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
+...+.++|++|+|||.||.++.+....+ ...++|++ ..+++.++..... .. . .....+.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~~-~----~~~~l~~l~- 166 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----EL-Q----LESAIAKLD- 166 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----CC-c----HHHHHHHHh-
Confidence 33568999999999999999999877543 22345554 3455555543321 00 1 122333443
Q ss_pred CCcEEEEEcccccc
Q 002133 252 KKRVLVILDDIWTQ 265 (961)
Q Consensus 252 ~kr~LlVlDdv~~~ 265 (961)
+-=||||||+...
T Consensus 167 -~~dLLIIDDlg~~ 179 (269)
T PRK08181 167 -KFDLLILDDLAYV 179 (269)
T ss_pred -cCCEEEEeccccc
Confidence 3469999999543
No 270
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.87 E-value=0.023 Score=70.07 Aligned_cols=106 Identities=18% Similarity=0.279 Sum_probs=59.6
Q ss_pred cccCCchHHHHHHHHHhcc-------CC--ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLRD-------SN--VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (961)
..++|.+..++.+...+.. ++ ..++.++|+.|+|||++|+.+++..... -...+.++++..... ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~-~~-- 642 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEK-HS-- 642 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhh-hh--
Confidence 4578999998888777751 12 2468899999999999999999765321 223455555443211 11
Q ss_pred HHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
..+-+|.+..-. ... ....+.+.++....-+|+|||+...
T Consensus 643 -~~~LiG~~pgy~-g~~-~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 643 -VSRLVGAPPGYV-GYE-EGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred -HHHHhCCCCccc-ccc-hhHHHHHHHHhCCCCeEEEeehhhC
Confidence 111123221110 100 1122334444334468999999754
No 271
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.87 E-value=0.06 Score=55.84 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=35.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (961)
.-+++.|.|.+|+|||++|.++......+ -..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 45689999999999999999987665422 45678888765 345555543
No 272
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.86 E-value=0.029 Score=60.48 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=41.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh---cC-CCCEEEEEEecCCCCHHHHHHHHHHHhCCC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK---ED-LFDVVVDAEVTHTPDWKEICGRIADQLGLE 231 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 231 (961)
.-.++.|+|.+|+||||++..++..... .+ .-..++|++....++..++ .++++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 4578999999999999999998764321 11 1236799998888777764 4555655543
No 273
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.86 E-value=0.36 Score=52.86 Aligned_cols=43 Identities=23% Similarity=0.560 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 158 NPVFQKMMESLRD---SNVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 158 ~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
+.-.+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3345566666653 457799999999999999999999988754
No 274
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.85 E-value=0.031 Score=60.66 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=57.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh---cC-CCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCC---------CCH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK---ED-LFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRP---------DSL 238 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---------~~~ 238 (961)
.-.++-|+|.+|+|||++|..++-.... .+ .-..++|++....+..+++ .+|++.++.+.... .+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCH
Confidence 3568889999999999999988754321 11 1136899999999988876 46677666543211 122
Q ss_pred HHH---HHHHHHHHHcCCcEEEEEccccc
Q 002133 239 VEK---ANQLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 239 ~~~---~~~l~~~l~~~kr~LlVlDdv~~ 264 (961)
++. +..+...+...+--|||+|-+..
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 222 22222333334556888887643
No 275
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.81 E-value=0.013 Score=66.23 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=42.0
Q ss_pred ccccCCchHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 151 YVHFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+.+++|.++.+++|++.|. +..-+++.++|++|+||||||+.+++-..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 4568899999999999883 45667999999999999999999999775
No 276
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.79 E-value=0.074 Score=55.54 Aligned_cols=90 Identities=19% Similarity=0.213 Sum_probs=55.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH-hC-CCccCCCCHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ-LG-LEIVRPDSLVEKANQLRQA 248 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~-~~~~~~~~~~~~~~~l~~~ 248 (961)
+.-+++=|+|+.|.||||+|.+++-..... -..++|++....+++..+. ++... +. +-.....+..+....+...
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 345688999999999999999988765533 3478999999999887763 33333 21 1122222333322222222
Q ss_pred HHcC--CcEEEEEcccc
Q 002133 249 LKKK--KRVLVILDDIW 263 (961)
Q Consensus 249 l~~~--kr~LlVlDdv~ 263 (961)
.+.. +--|+|+|.|-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 2222 35788999764
No 277
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.025 Score=62.15 Aligned_cols=94 Identities=22% Similarity=0.292 Sum_probs=58.1
Q ss_pred ccccCCch---HHHHHHHHHhccC--------C-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHH
Q 002133 151 YVHFPSRN---PVFQKMMESLRDS--------N-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWK 218 (961)
Q Consensus 151 ~~~~~gr~---~~~~~l~~~l~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 218 (961)
+.++.|-| +++++|++.|.++ + .+=|.++|++|.|||-||++++....+- | |......|+
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFd-- 374 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFD-- 374 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchh--
Confidence 55666766 4678889998753 2 4568899999999999999999876643 2 222222221
Q ss_pred HHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 219 EICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 219 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
+ ++-..| ...+..+...-+..-++.|.+|.++..
T Consensus 375 E----m~VGvG---------ArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 375 E----MFVGVG---------ARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred h----hhhccc---------HHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1 111111 122333444334456899999988654
No 278
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.76 E-value=0.15 Score=53.33 Aligned_cols=169 Identities=21% Similarity=0.213 Sum_probs=97.1
Q ss_pred cccCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC-EEEEEEecCCCC-HHHHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD-VVVDAEVTHTPD-WKEICGRIA 225 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~ 225 (961)
..++|-.++-.++-.++. -.+..-+.|+|+.|.|||+|......+.+ .+. ..+-|......- .+-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHHH
Confidence 456787777777666665 23445678999999999999988887722 232 233344443332 233455555
Q ss_pred HHhCCC----ccCCCCHHHHHHHHHHHHHcC-----CcEEEEEccccccccc-------ccccCCCCCCCcccccCCCce
Q 002133 226 DQLGLE----IVRPDSLVEKANQLRQALKKK-----KRVLVILDDIWTQINL-------DDIGIPFWDGEKQSVDNQGRW 289 (961)
Q Consensus 226 ~~l~~~----~~~~~~~~~~~~~l~~~l~~~-----kr~LlVlDdv~~~~~~-------~~l~~~~~~~~~~~~~~~~gs 289 (961)
+++... .....+..+....+.+.|+++ -++..|+|..+--..- +-+...-. ...|=+
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs-------~r~Pic 173 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS-------ARAPIC 173 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh-------cCCCeE
Confidence 554322 222224456677777777642 3578888877543110 00100000 145667
Q ss_pred EEEEEecchhhh------hhcCCCCceEEccCCCHHHHHHHHHHHhC
Q 002133 290 TLLLASRDQHVL------RINMSNPRIFSISTLADGEAKSLFEKIVG 330 (961)
Q Consensus 290 ~IlvTtR~~~v~------~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~ 330 (961)
-|-+|||-.... ........++-++.++-++...++++...
T Consensus 174 iig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 174 IIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred EEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 888999975433 11233334666777777777777777653
No 279
>PRK14974 cell division protein FtsY; Provisional
Probab=95.75 E-value=0.11 Score=56.26 Aligned_cols=91 Identities=23% Similarity=0.234 Sum_probs=52.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCccCC---CCHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRP---DSLVEKANQLRQ 247 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 247 (961)
+..++.++|+.|+||||.+..++...... .+. ++.+.... .....+.++.....++.+.... .+....+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~-V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFS-VVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCe-EEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 46799999999999999999998877643 232 33344321 1233445566777777654322 122222222222
Q ss_pred HHHcCCcEEEEEccccc
Q 002133 248 ALKKKKRVLVILDDIWT 264 (961)
Q Consensus 248 ~l~~~kr~LlVlDdv~~ 264 (961)
.......-+|++|....
T Consensus 217 ~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 217 HAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHhCCCCEEEEECCCc
Confidence 22222234888997744
No 280
>PRK10867 signal recognition particle protein; Provisional
Probab=95.73 E-value=0.063 Score=60.11 Aligned_cols=92 Identities=22% Similarity=0.227 Sum_probs=49.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCccC---CCCHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVR---PDSLVEKANQLR 246 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 246 (961)
....+|.++|++|+||||.|..++.....+..+ .+..|+.... +...+-++...+..+++... ..+..+......
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~-kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKK-KVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCC-cEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 346789999999999999999998877643112 2333443321 12233445555665554221 113333333333
Q ss_pred HHHHcCCcEEEEEcccc
Q 002133 247 QALKKKKRVLVILDDIW 263 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~ 263 (961)
+..+....-+||+|-.-
T Consensus 177 ~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 177 EEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33332222366666553
No 281
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.073 Score=57.62 Aligned_cols=90 Identities=24% Similarity=0.247 Sum_probs=56.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (961)
..++++++|+.|+||||++..++.....++ ..+.+++.... ....+-++...+.++.+.....+..+. ....+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL-~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAEL-EEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHH-HHHHHHHH
Confidence 457899999999999999999998765432 34556666433 234556667777777665433344443 33334443
Q ss_pred c-CCcEEEEEccccc
Q 002133 251 K-KKRVLVILDDIWT 264 (961)
Q Consensus 251 ~-~kr~LlVlDdv~~ 264 (961)
. +..-+|++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 2346788887643
No 282
>PRK06526 transposase; Provisional
Probab=95.71 E-value=0.022 Score=59.22 Aligned_cols=75 Identities=21% Similarity=0.218 Sum_probs=44.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
+...+.++|++|+|||+||..+......++ +. +.|+ +..+++.++..... .. .. ...+ ..+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g-~~-v~f~------t~~~l~~~l~~~~~----~~-~~---~~~l-~~l~- 158 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG-HR-VLFA------TAAQWVARLAAAHH----AG-RL---QAEL-VKLG- 158 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC-Cc-hhhh------hHHHHHHHHHHHHh----cC-cH---HHHH-HHhc-
Confidence 345689999999999999999998775432 32 2332 33445555543211 00 11 1122 2232
Q ss_pred CCcEEEEEcccccc
Q 002133 252 KKRVLVILDDIWTQ 265 (961)
Q Consensus 252 ~kr~LlVlDdv~~~ 265 (961)
+.-+||+||+...
T Consensus 159 -~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 -RYPLLIVDEVGYI 171 (254)
T ss_pred -cCCEEEEcccccC
Confidence 3468999999643
No 283
>PRK06921 hypothetical protein; Provisional
Probab=95.71 E-value=0.049 Score=57.26 Aligned_cols=71 Identities=25% Similarity=0.344 Sum_probs=44.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
....+.++|..|+|||+||.++++....+. -..++|++. .+++..+...+ +......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~-----------~~~~~~~~~~~- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF-----------DLLEAKLNRMK- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH-----------HHHHHHHHHhc-
Confidence 456789999999999999999999876431 234566654 23333332221 11122333343
Q ss_pred CCcEEEEEccc
Q 002133 252 KKRVLVILDDI 262 (961)
Q Consensus 252 ~kr~LlVlDdv 262 (961)
+-=||||||+
T Consensus 177 -~~dlLiIDDl 186 (266)
T PRK06921 177 -KVEVLFIDDL 186 (266)
T ss_pred -CCCEEEEecc
Confidence 3469999999
No 284
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.68 E-value=0.04 Score=61.94 Aligned_cols=86 Identities=22% Similarity=0.190 Sum_probs=51.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh-hcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV-KEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (961)
.++++++|++|+||||++..++.... ..+ -..+..++..... ...+.++...+.++++.....+..+....+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~-g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG-KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 35899999999999999999887765 222 2345566654321 12334555556666655433333333333332 22
Q ss_pred cCCcEEEEEccc
Q 002133 251 KKKRVLVILDDI 262 (961)
Q Consensus 251 ~~kr~LlVlDdv 262 (961)
..=+|++|..
T Consensus 299 --~~DlVlIDt~ 308 (424)
T PRK05703 299 --DCDVILIDTA 308 (424)
T ss_pred --CCCEEEEeCC
Confidence 3467888965
No 285
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.59 E-value=0.097 Score=55.19 Aligned_cols=90 Identities=22% Similarity=0.287 Sum_probs=51.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCccC---CCCHHHH-HHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVR---PDSLVEK-ANQL 245 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~-~~~l 245 (961)
...++++++|++|+||||.+..++.....++ ..+.+++.... ....+-++...+..+.+... ..+.... ...+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g--~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQG--KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 3467899999999999999999998776432 34556655432 12234455566666644321 1122222 2233
Q ss_pred HHHHHcCCcEEEEEcccc
Q 002133 246 RQALKKKKRVLVILDDIW 263 (961)
Q Consensus 246 ~~~l~~~kr~LlVlDdv~ 263 (961)
..... ...-++++|-.-
T Consensus 148 ~~~~~-~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKA-RNIDVVLIDTAG 164 (272)
T ss_pred HHHHH-CCCCEEEEeCCC
Confidence 33222 344678888663
No 286
>PTZ00035 Rad51 protein; Provisional
Probab=95.59 E-value=0.062 Score=58.47 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh---c-CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC---------CCCH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK---E-DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR---------PDSL 238 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 238 (961)
.-.++.|+|..|+||||++..++-.... . ..=..++|++....++..++ .++++.++..... ..+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 4568999999999999999998765431 0 11235679998887777764 5556665543211 1122
Q ss_pred HHHHH---HHHHHHHcCCcEEEEEccccc
Q 002133 239 VEKAN---QLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 239 ~~~~~---~l~~~l~~~kr~LlVlDdv~~ 264 (961)
++... .+...+...+--|||+|-+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 22222 233333344556888887744
No 287
>PTZ00494 tuzin-like protein; Provisional
Probab=95.59 E-value=0.22 Score=54.08 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=93.5
Q ss_pred CCccccCCchHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLR---DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
.....++.|+.+-..+-+.|. ....+++.+.|.-|.||++|.+........ ..++|++... ++-++.+.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHHHHH
Confidence 345567888877655555554 456889999999999999999988776543 3578888876 45577888
Q ss_pred HHhCCCccCCCCHHHHHHHHHHHHH------cCCcEEEEEccccccccccccc---CCCCCCCcccccCCCceEEEEEec
Q 002133 226 DQLGLEIVRPDSLVEKANQLRQALK------KKKRVLVILDDIWTQINLDDIG---IPFWDGEKQSVDNQGRWTLLLASR 296 (961)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~------~~kr~LlVlDdv~~~~~~~~l~---~~~~~~~~~~~~~~~gs~IlvTtR 296 (961)
+.+|++..+. -.+.++.+.+... +++.-+||+- +.+...+..+. ..+.. ...-|.|++--=
T Consensus 440 KALgV~nve~--CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLac-------DrRlCHvv~EVp 509 (664)
T PTZ00494 440 RALGVSNVEV--CGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVS-------DCQACHIVLAVP 509 (664)
T ss_pred HHhCCCChhh--hccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHc-------cchhheeeeech
Confidence 8888775442 1223333333322 2344455553 11111111000 01111 233455655433
Q ss_pred chhhh--hhcCCCCceEEccCCCHHHHHHHHHHHh
Q 002133 297 DQHVL--RINMSNPRIFSISTLADGEAKSLFEKIV 329 (961)
Q Consensus 297 ~~~v~--~~~~~~~~~~~l~~L~~~~s~~Lf~~~~ 329 (961)
-+... ....+.-.-|.+.+++..+|.+......
T Consensus 510 lESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 510 MKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred HhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 33221 1123334568899999999988766543
No 288
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=1.4 Score=48.39 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=83.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcE
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRV 255 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~ 255 (961)
-.++||+|.|||++..++++... ||.+ -+..+...+-.+ ++.++.. ...+-
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~----ydIy-dLeLt~v~~n~d-Lr~LL~~-----------------------t~~kS 288 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLN----YDIY-DLELTEVKLDSD-LRHLLLA-----------------------TPNKS 288 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcC----CceE-EeeeccccCcHH-HHHHHHh-----------------------CCCCc
Confidence 56899999999999999998865 6533 222222211112 2222211 13456
Q ss_pred EEEEcccccccccccccCC-------------------CCCCCcccccCCCceE-EEEEecchhhhhhc-C---CCCceE
Q 002133 256 LVILDDIWTQINLDDIGIP-------------------FWDGEKQSVDNQGRWT-LLLASRDQHVLRIN-M---SNPRIF 311 (961)
Q Consensus 256 LlVlDdv~~~~~~~~l~~~-------------------~~~~~~~~~~~~~gs~-IlvTtR~~~v~~~~-~---~~~~~~ 311 (961)
.||+.|++-..+...-... +-++. ++..++=| ||.||-........ + .-...+
T Consensus 289 IivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGl---wSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 289 ILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGL---WSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred EEEEeecccccccccccccccccccCCcceeehHHhhhhhccc---cccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 7777777643111100000 00000 01222335 55566555443211 1 123467
Q ss_pred EccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHhc-cC
Q 002133 312 SISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALK-GQ 366 (961)
Q Consensus 312 ~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~-~~ 366 (961)
.+.--+.+.-..||.++.+...++ .+..+|.+...|.-+.=..+|..|- ++
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 888899999999999998754322 3556666666666555555665554 44
No 289
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.069 Score=58.91 Aligned_cols=90 Identities=21% Similarity=0.168 Sum_probs=54.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcC--CCCEEEEEEecCC-CCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKED--LFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQA 248 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 248 (961)
..++|.++|+.|+||||.+..++....... +-..+.-+++... .....-++...+.++.+........+....+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 356899999999999999999988765321 1224445555432 233344677777777765444343333333332
Q ss_pred HHcCCcEEEEEccccc
Q 002133 249 LKKKKRVLVILDDIWT 264 (961)
Q Consensus 249 l~~~kr~LlVlDdv~~ 264 (961)
+ .+.-+|++|.+..
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 2 2457888897643
No 290
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.58 E-value=0.045 Score=56.07 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=33.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
.-+++.|.|.+|+||||+|.+++.....+ -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 45689999999999999999999876532 34567887665543
No 291
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.58 E-value=0.034 Score=59.24 Aligned_cols=87 Identities=23% Similarity=0.294 Sum_probs=56.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC-----CCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 246 (961)
.-+++-|+|+.|+||||||.++....... -..++|++....++. ..++.+|++... ++..++.+..+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHH
Confidence 35689999999999999999999876543 356889999887654 334555655332 234555556666
Q ss_pred HHHHcCCcEEEEEcccccc
Q 002133 247 QALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~~~ 265 (961)
+.++.+.--++|+|-|-..
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 6666666678899987543
No 292
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.058 Score=57.94 Aligned_cols=87 Identities=28% Similarity=0.287 Sum_probs=58.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCC-CCHHHHHHHHHHHHHc
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRP-DSLVEKANQLRQALKK 251 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~~ 251 (961)
-.+|.|=|-+|||||||.-+++.+...+. .+.+|+-.+.. .++ +--++.++...... --.+...+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~--~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESL--QQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCH--HHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46899999999999999999999987643 67777665543 322 33345566544221 0122334556666666
Q ss_pred CCcEEEEEcccccc
Q 002133 252 KKRVLVILDDIWTQ 265 (961)
Q Consensus 252 ~kr~LlVlDdv~~~ 265 (961)
.+.-++|+|-+.+.
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 78899999987653
No 293
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.55 E-value=0.036 Score=59.25 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.-...++|+|++|+|||.+|++++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 34568999999999999999999998764
No 294
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.55 E-value=0.095 Score=53.88 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=35.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGL 230 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 230 (961)
.-.++.|.|..|+||||+|.+++.....++ ..+++++... +..++++.+ .+++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhCC
Confidence 345899999999999999877776653322 3456666433 446666665 34443
No 295
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.51 E-value=0.07 Score=56.04 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=31.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (961)
.-+++.|.|.+|+|||++|.+++.....+ =..+++++....
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC
Confidence 45689999999999999999987765432 246778887643
No 296
>PRK04328 hypothetical protein; Provisional
Probab=95.50 E-value=0.064 Score=55.97 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=32.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (961)
.-+++.|.|.+|+|||++|.++......+ -..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 45689999999999999999987765432 356788887764
No 297
>PRK10536 hypothetical protein; Provisional
Probab=95.48 E-value=0.04 Score=56.33 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=43.0
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEE
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVD 208 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w 208 (961)
+...+.+|......++.++.+. .++.+.|++|+|||+||.++..+.-..+.|+.++-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3445678898888888888653 48999999999999999999986432344654443
No 298
>PRK06547 hypothetical protein; Provisional
Probab=95.45 E-value=0.021 Score=55.56 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=29.1
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 163 KMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 163 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+...+......+|+|.|+.|+||||+|+.+.....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 444455566778999999999999999999998753
No 299
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.44 E-value=0.83 Score=52.69 Aligned_cols=110 Identities=24% Similarity=0.308 Sum_probs=76.9
Q ss_pred cccCCchHHHHHHHHHhc----c-CCccEEEEEcCCCCcHHHHHHHHHHHHhh---c---CCCCEEEEEEecCCCCHHHH
Q 002133 152 VHFPSRNPVFQKMMESLR----D-SNVNMIGLYGMGGVGKTTLVKVVARQVVK---E---DLFDVVVDAEVTHTPDWKEI 220 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~---~~f~~~~wv~~~~~~~~~~~ 220 (961)
..+-+|+.+..+|-..+. + ...+.+-|.|.+|.|||..+..|.+.... + ..|+ .+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 445689999988888775 3 33457899999999999999999986542 1 2343 345666666678999
Q ss_pred HHHHHHHhCCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc
Q 002133 221 CGRIADQLGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ 265 (961)
Q Consensus 221 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~ 265 (961)
...|..++...... .....+.+..+.. ..+..+|++|+++..
T Consensus 475 Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~L 520 (767)
T KOG1514|consen 475 YEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDIL 520 (767)
T ss_pred HHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHH
Confidence 99999988765432 3344455555554 235689999988654
No 300
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.42 E-value=0.098 Score=58.55 Aligned_cols=91 Identities=24% Similarity=0.181 Sum_probs=50.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCccCC---CCHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRP---DSLVEKANQLRQ 247 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 247 (961)
...++.++|++|+||||.|..++.....+..+ .+.-|++... +...+-++......+.+.... .+..+......+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 45789999999999999999998876432222 2334443321 223444555566665543221 233344444444
Q ss_pred HHHcCCcEEEEEcccc
Q 002133 248 ALKKKKRVLVILDDIW 263 (961)
Q Consensus 248 ~l~~~kr~LlVlDdv~ 263 (961)
.......=+||+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4433232377777654
No 301
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.42 E-value=0.035 Score=55.79 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=68.2
Q ss_pred CCCceeEEEeccCCCCCCCCh---hhhhCCCceeEEEecCCCCCCCCc-cc-------------cCCcCCCEEEccCCCC
Q 002133 532 QCTRLKLFLLFTEDSSLQIPN---QFFDGMTELLVLHLTGIHFPSLPL-SL-------------GSLINLRTLSFDCCHL 594 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~lp~-~~-------------~~l~~L~~L~L~~~~l 594 (961)
+||+|+..+|+.|.+....|+ .++++-+.|.+|.+++|.+..+.. -+ .+-+.|++.....|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 677777777777776554443 334566677777777776653211 01 2345566666666665
Q ss_pred CC-C-----ccccCCCCCcEEEeccCcCCc--c----chhhhcCCCcCEEecCCCCCCcccChH----HHhcCccCCEEE
Q 002133 595 ED-V-----ARVGDLAKLEILSFRNSHIEQ--L----PEQIGNLTRLKLLDLSNCSKLKVIKPE----VISRLSRLNELY 658 (961)
Q Consensus 595 ~~-~-----~~~~~l~~L~~L~l~~~~l~~--l----p~~~~~l~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~ 658 (961)
.. + ..+..-.+|+.+.+..|.|.. + -..+..+.+|+.||+.+| .++..... .+...+.|++|.
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhcc
Confidence 44 2 122233456666666665541 1 112445566666666663 22222111 122334456666
Q ss_pred ccCCCC
Q 002133 659 MGNSFT 664 (961)
Q Consensus 659 l~~~~~ 664 (961)
+..|.+
T Consensus 249 lnDCll 254 (388)
T COG5238 249 LNDCLL 254 (388)
T ss_pred ccchhh
Confidence 655543
No 302
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.06 Score=60.36 Aligned_cols=132 Identities=15% Similarity=0.211 Sum_probs=78.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcC
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (961)
..=|.++|++|+|||-||++|++..+.. |++|... +++.... | ..+..+..+.+.-+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkYV---G-------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKYV---G-------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHHh---h-------hHHHHHHHHHHHhhcC
Confidence 4457899999999999999999987643 4555543 3333222 2 2234455666666667
Q ss_pred CcEEEEEcccccccc-------------cccccCCCCCCCcccccCCCceEEEEEecchhhhhhcC----CCCceEEccC
Q 002133 253 KRVLVILDDIWTQIN-------------LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSIST 315 (961)
Q Consensus 253 kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~ 315 (961)
.++.|.||.++.... .+++... ...+....|.-||-.|-...+....+ .-....-+..
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtE-----lDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l 678 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTE-----LDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL 678 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHH-----hcccccccceEEEeecCCCcccchhhcCCCccCceeeecC
Confidence 899999999865311 1111110 11122445667777776655442211 1123556666
Q ss_pred CCHHHHHHHHHHHhC
Q 002133 316 LADGEAKSLFEKIVG 330 (961)
Q Consensus 316 L~~~~s~~Lf~~~~~ 330 (961)
-+.+|-...++....
T Consensus 679 Pn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 679 PNAEERVAILKTITK 693 (802)
T ss_pred CCHHHHHHHHHHHhc
Confidence 677777777777765
No 303
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.38 E-value=0.11 Score=53.91 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=56.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC-----------------
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR----------------- 234 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------------- 234 (961)
.-+++.|+|.+|+|||++|.++......+ =..++|++..+. ..++.+++ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 45689999999999999999997654322 346789988764 45555554 333322111
Q ss_pred ---CCCHHHHHHHHHHHHHcCCcEEEEEcccc
Q 002133 235 ---PDSLVEKANQLRQALKKKKRVLVILDDIW 263 (961)
Q Consensus 235 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 263 (961)
.....+..+.+.+.+.+.+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 11234556666666654455689999876
No 304
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.43 Score=54.58 Aligned_cols=157 Identities=13% Similarity=0.185 Sum_probs=81.9
Q ss_pred CccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 150 GYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
...++-|-++...+|-+.+. -+..+-|..+|++|+|||++|+++++..+.. | +.+...
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp-- 502 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP-- 502 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH--
Confidence 34555556665555544432 1456678899999999999999999886632 3 444332
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccc-------------cccCCCCCCCcccc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD-------------DIGIPFWDGEKQSV 283 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~-------------~l~~~~~~~~~~~~ 283 (961)
+++.... | ..+..+..+.+.-++-...+|.||.++....-. .+...+ + .+
T Consensus 503 --EL~sk~v---G-------eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEm-D----G~ 565 (693)
T KOG0730|consen 503 --ELFSKYV---G-------ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEM-D----GL 565 (693)
T ss_pred --HHHHHhc---C-------chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHc-c----cc
Confidence 1111111 1 122333344443343456888888776541110 000000 0 01
Q ss_pred cCCCceEEEEEecchhhh-hhcCC---CCceEEccCCCHHHHHHHHHHHhCCC
Q 002133 284 DNQGRWTLLLASRDQHVL-RINMS---NPRIFSISTLADGEAKSLFEKIVGDS 332 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~-~~~~~---~~~~~~l~~L~~~~s~~Lf~~~~~~~ 332 (961)
....+.-||-.|-..... ...+. -...+.++.=+.+.-.++|+.++...
T Consensus 566 e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 566 EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 122333344444333222 11233 34567777777788888999888643
No 305
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.30 E-value=0.059 Score=59.35 Aligned_cols=87 Identities=26% Similarity=0.256 Sum_probs=53.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCC-CHHHHHHHHHHHHHc
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD-SLVEKANQLRQALKK 251 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 251 (961)
-.++.|.|.+|+|||||+.+++...... -..++|++.... ..++ +.-++.++....... ......+.+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999999877643 246778876543 3333 222445554322110 001123345555544
Q ss_pred CCcEEEEEccccc
Q 002133 252 KKRVLVILDDIWT 264 (961)
Q Consensus 252 ~kr~LlVlDdv~~ 264 (961)
.+.-+||+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 4667899998754
No 306
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.27 E-value=0.03 Score=62.63 Aligned_cols=51 Identities=12% Similarity=0.169 Sum_probs=40.1
Q ss_pred cccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC
Q 002133 152 VHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD 204 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 204 (961)
..++||++.++.+...+..+. -|.|.|++|+|||++|+.+.......+.|.
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 357899999999888876443 478999999999999999998765433443
No 307
>PRK09183 transposase/IS protein; Provisional
Probab=95.26 E-value=0.065 Score=56.15 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
...+.|+|+.|+|||+||..++.....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999877554
No 308
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.25 E-value=0.59 Score=47.58 Aligned_cols=208 Identities=10% Similarity=0.102 Sum_probs=108.4
Q ss_pred ccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhh----cCCCCEEEEEEecCC--------------
Q 002133 153 HFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVK----EDLFDVVVDAEVTHT-------------- 214 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~-------------- 214 (961)
...++++.-..+.......+.+-..++|+.|.||-|.+..+.+..-. +-.-+..-|.+-+..
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35566666666666655566888999999999999988877766421 111233445443332
Q ss_pred -------CCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEE-EEEcccccc--cccccccCCCCCCCccccc
Q 002133 215 -------PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVL-VILDDIWTQ--INLDDIGIPFWDGEKQSVD 284 (961)
Q Consensus 215 -------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~L-lVlDdv~~~--~~~~~l~~~~~~~~~~~~~ 284 (961)
...+-+..++++..+....- .- ..++.|= +|+-.++.. +.-.++....-.
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qi-----------e~--~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk------- 153 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQI-----------ET--QGQRPFKVVVINEADELTRDAQHALRRTMEK------- 153 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcch-----------hh--ccccceEEEEEechHhhhHHHHHHHHHHHHH-------
Confidence 11123344444433211100 00 0123333 333333332 111111111101
Q ss_pred CCCceEEEEEecchh-hhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHh
Q 002133 285 NQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (961)
Q Consensus 285 ~~~gs~IlvTtR~~~-v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 363 (961)
-.+.+|+|+.--+-. +...--...-.+++..-+++|....+.+.+..+.-.-. .+++.+|+++++|.---...+--..
T Consensus 154 Ys~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp-~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP-KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred HhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc-HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 123455554332211 11111112236789999999999999988754332211 6789999999998764333333333
Q ss_pred c--cC---------ChHHHHHHHHHHHhc
Q 002133 364 K--GQ---------STHVWKDAINWLRKS 381 (961)
Q Consensus 364 ~--~~---------~~~~w~~~~~~l~~~ 381 (961)
+ +. +.-+|+.+..++...
T Consensus 233 ~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 233 RVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HhccccccccCCCCCCccHHHHHHHHHHH
Confidence 3 11 567899888876553
No 309
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.24 E-value=0.031 Score=55.56 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=37.2
Q ss_pred CchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE
Q 002133 156 SRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE 210 (961)
Q Consensus 156 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 210 (961)
.+..+-...++.|. +..++.+.|++|.|||.||.+.+-+.-..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34455556666665 556899999999999999999998776668899888873
No 310
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.24 E-value=0.056 Score=52.99 Aligned_cols=75 Identities=27% Similarity=0.371 Sum_probs=45.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
+..-+.++|..|+|||.||.++.+....++ + .+.|++ ..+++..+-... ... . ...+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~-~v~f~~------~~~L~~~l~~~~----~~~-~----~~~~~~~l~- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG-Y-SVLFIT------ASDLLDELKQSR----SDG-S----YEELLKRLK- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEE------HHHHHHHHHCCH----CCT-T----HCHHHHHHH-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC-c-ceeEee------cCceeccccccc----ccc-c----hhhhcCccc-
Confidence 445799999999999999999998876533 3 345564 344555543221 111 1 123344444
Q ss_pred CCcEEEEEcccccc
Q 002133 252 KKRVLVILDDIWTQ 265 (961)
Q Consensus 252 ~kr~LlVlDdv~~~ 265 (961)
+-=||||||+...
T Consensus 108 -~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 -RVDLLILDDLGYE 120 (178)
T ss_dssp -TSSCEEEETCTSS
T ss_pred -cccEeccccccee
Confidence 3458899999654
No 311
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.24 E-value=0.041 Score=56.70 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=56.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCc----------------cC-
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEI----------------VR- 234 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------------~~- 234 (961)
.-+++.|.|.+|+|||++|.++......+ .=..++|++.... ..++.+.+- .++.+. ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 45689999999999999999987665432 0135678887664 345444432 333211 00
Q ss_pred ---CCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 235 ---PDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 235 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
..+.......+.+.+...+...+|+|.+...
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1245666777777766545578899987554
No 312
>PRK07667 uridine kinase; Provisional
Probab=95.22 E-value=0.028 Score=56.15 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=29.6
Q ss_pred HHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 162 QKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 162 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
+.|++.+. ..+..+|+|.|.+|.||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44555554 334579999999999999999999998764
No 313
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.54 Score=46.77 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=74.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (961)
.+.+-+.++|++|.|||-||++|+++- .+-|+.||.. +-+++-|.+ -.....++.-.-+
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs---elvqk~ige-----------gsrmvrelfvmar 237 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS---ELVQKYIGE-----------GSRMVRELFVMAR 237 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH---HHHHHHhhh-----------hHHHHHHHHHHHH
Confidence 456678899999999999999998643 3556777763 222222211 1222333333333
Q ss_pred cCCcEEEEEcccccccccccccCCCCCCC-----------cccccCCCceEEEEEecchhhhhhc-C---CCCceEEccC
Q 002133 251 KKKRVLVILDDIWTQINLDDIGIPFWDGE-----------KQSVDNQGRWTLLLASRDQHVLRIN-M---SNPRIFSIST 315 (961)
Q Consensus 251 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~-----------~~~~~~~~gs~IlvTtR~~~v~~~~-~---~~~~~~~l~~ 315 (961)
...+-.|..|.+++.-.-.-=...-.+++ ...|...+.-+||..|..-.+.... . .-.+-++..+
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCC
Confidence 34567788888765411000000000000 1112245677888887665554221 1 1234567777
Q ss_pred CCHHHHHHHHHHHh
Q 002133 316 LADGEAKSLFEKIV 329 (961)
Q Consensus 316 L~~~~s~~Lf~~~~ 329 (961)
-+++.-.+.++-+.
T Consensus 318 p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 318 PNEEARLDILKIHS 331 (404)
T ss_pred CCHHHHHHHHHHhh
Confidence 77777667766544
No 314
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.19 E-value=0.12 Score=51.81 Aligned_cols=90 Identities=24% Similarity=0.221 Sum_probs=49.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCC--------CEEEEEEecCCCCHHHHHHHHHHHhCCC--------------
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLF--------DVVVDAEVTHTPDWKEICGRIADQLGLE-------------- 231 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------------- 231 (961)
.++.|+|++|+||||++.++.........| ..++|++.... ..++.+.+.......
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecccc
Confidence 478899999999999999999887653333 25678877665 333333333222110
Q ss_pred --------ccCCCCHHHHHHHHHHHHHc-CCcEEEEEcccccc
Q 002133 232 --------IVRPDSLVEKANQLRQALKK-KKRVLVILDDIWTQ 265 (961)
Q Consensus 232 --------~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~ 265 (961)
.............+.+.+.. .+.-+||+|.+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~ 153 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSL 153 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHH
Confidence 00000123445566666654 34568888977543
No 315
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.16 E-value=0.13 Score=55.66 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEe
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV 211 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 211 (961)
...+.++|..|+|||.||.++++....++ ..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH
Confidence 36799999999999999999999886543 24566654
No 316
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.0082 Score=35.82 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=13.8
Q ss_pred CCcEEEeccCcCCccchhhhc
Q 002133 605 KLEILSFRNSHIEQLPEQIGN 625 (961)
Q Consensus 605 ~L~~L~l~~~~l~~lp~~~~~ 625 (961)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777765544
No 317
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.32 Score=56.76 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=76.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
..+.+.++|++|.|||.||+++++.... +| +.+... .++.+. +| .....+..+...-++
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~--~f-----i~v~~~----~l~sk~---vG-------esek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRS--RF-----ISVKGS----ELLSKW---VG-------ESEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCC--eE-----EEeeCH----HHhccc---cc-------hHHHHHHHHHHHHHc
Confidence 4557899999999999999999996542 23 222221 111110 01 122233344444344
Q ss_pred CCcEEEEEcccccccccccccCC-----CCCCC---cccccCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHH
Q 002133 252 KKRVLVILDDIWTQINLDDIGIP-----FWDGE---KQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADG 319 (961)
Q Consensus 252 ~kr~LlVlDdv~~~~~~~~l~~~-----~~~~~---~~~~~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~ 319 (961)
.....|.+|+++....+..-... ..... ........+..||-||-........+ .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 57899999999765333221000 00000 00011334444555555444332111 22457889999999
Q ss_pred HHHHHHHHHhCCC
Q 002133 320 EAKSLFEKIVGDS 332 (961)
Q Consensus 320 ~s~~Lf~~~~~~~ 332 (961)
+..+.|+.+..+.
T Consensus 414 ~r~~i~~~~~~~~ 426 (494)
T COG0464 414 ERLEIFKIHLRDK 426 (494)
T ss_pred HHHHHHHHHhccc
Confidence 9999999988643
No 318
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.08 E-value=0.02 Score=57.33 Aligned_cols=25 Identities=48% Similarity=0.675 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
||+|.|.+|+||||+|+++......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999998874
No 319
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.08 E-value=0.11 Score=52.94 Aligned_cols=41 Identities=22% Similarity=0.163 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (961)
+|+|.|..|+||||+|+.+.........=..+..++.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999887531111234445554443
No 320
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.06 E-value=0.044 Score=51.45 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=32.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
|.++|+.|+|||++|+.+++.... ...-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceee
Confidence 679999999999999999998732 2345677887777776543
No 321
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.05 E-value=0.12 Score=58.54 Aligned_cols=88 Identities=22% Similarity=0.198 Sum_probs=51.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
..|++++|+.|+||||.+.+++.....++.-..+..+.... .....+-++...+..++......+..+....+ ..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~- 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR- 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc-
Confidence 36999999999999999999998775432222344554432 22444556666777776543322222222222 2222
Q ss_pred CCcEEEEEcccc
Q 002133 252 KKRVLVILDDIW 263 (961)
Q Consensus 252 ~kr~LlVlDdv~ 263 (961)
.+..+++|..-
T Consensus 334 -d~d~VLIDTaG 344 (484)
T PRK06995 334 -NKHIVLIDTIG 344 (484)
T ss_pred -CCCeEEeCCCC
Confidence 33567778653
No 322
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.03 E-value=0.0088 Score=35.68 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=13.7
Q ss_pred ceeEEEecCCCCCCCCccccC
Q 002133 560 ELLVLHLTGIHFPSLPLSLGS 580 (961)
Q Consensus 560 ~L~~L~L~~~~~~~lp~~~~~ 580 (961)
+|++||+++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777766665544
No 323
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.03 E-value=0.071 Score=53.01 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=31.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
+.|.|++|+|||++|.++....... =..++|++.... ..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCC--HHHHHHH
Confidence 6799999999999999998776532 245678876553 4455444
No 324
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.99 E-value=0.02 Score=52.91 Aligned_cols=22 Identities=45% Similarity=0.780 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 002133 176 IGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~ 197 (961)
|.|.|..|+||||+|+++....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 325
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.95 E-value=0.19 Score=59.78 Aligned_cols=88 Identities=22% Similarity=0.180 Sum_probs=55.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
.+|++++|+.|+||||.+.+++...........+..++... .....+-++...+.++++.....+..+.. ...+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~-~al~~~~- 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLR-FALAALG- 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHH-HHHHHhc-
Confidence 46999999999999999999998764322223455555432 22355667777778887665443444433 3333343
Q ss_pred CCcEEEEEcccc
Q 002133 252 KKRVLVILDDIW 263 (961)
Q Consensus 252 ~kr~LlVlDdv~ 263 (961)
..-+|++|-.-
T Consensus 263 -~~D~VLIDTAG 273 (767)
T PRK14723 263 -DKHLVLIDTVG 273 (767)
T ss_pred -CCCEEEEeCCC
Confidence 23578888775
No 326
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.95 E-value=0.74 Score=49.10 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=89.9
Q ss_pred HHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHH--------hhcCCCCEEEEEEe-cCCCCHHHHHHHHHHHhCC
Q 002133 161 FQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQV--------VKEDLFDVVVDAEV-THTPDWKEICGRIADQLGL 230 (961)
Q Consensus 161 ~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 230 (961)
++.+.+.+...+. ++..++|..|.||+++|..+.+.. ....|-+.+.+++. .......++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 3444555555444 466799999999999999999886 22223323344432 1222333332 33333322
Q ss_pred CccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEe-cchhhhhhcCCC
Q 002133 231 EIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLAS-RDQHVLRINMSN 307 (961)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTt-R~~~v~~~~~~~ 307 (961)
.... .+++-++|+|++.... ..+.+...+-+ -.+++.+|++| ....+...-...
T Consensus 84 ~~~~----------------~~~~KvvII~~~e~m~~~a~NaLLK~LEE-------Pp~~t~~il~~~~~~kll~TI~SR 140 (299)
T PRK07132 84 SSFV----------------QSQKKILIIKNIEKTSNSLLNALLKTIEE-------PPKDTYFLLTTKNINKVLPTIVSR 140 (299)
T ss_pred CCcc----------------cCCceEEEEecccccCHHHHHHHHHHhhC-------CCCCeEEEEEeCChHhChHHHHhC
Confidence 2111 1356778889886552 23333222222 23455555544 444443222334
Q ss_pred CceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHH
Q 002133 308 PRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (961)
Q Consensus 308 ~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 358 (961)
...+++.++++++..+.+... + .+ ++.+..++...+|.=-|+..
T Consensus 141 c~~~~f~~l~~~~l~~~l~~~-~---~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 141 CQVFNVKEPDQQKILAKLLSK-N---KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred eEEEECCCCCHHHHHHHHHHc-C---CC---hhHHHHHHHHcCCHHHHHHH
Confidence 568999999999988777653 1 11 13355666666663345444
No 327
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.081 Score=51.14 Aligned_cols=27 Identities=41% Similarity=0.564 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
+.|.+.|.+|+||||+|++++...+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 457789999999999999999987754
No 328
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.036 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.|.|.|++|.||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998543
No 329
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.93 E-value=0.024 Score=45.71 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 330
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.92 E-value=0.19 Score=55.87 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=51.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (961)
...+++++|+.|+||||++..++.........+.+..+.... .....+-+....+.++++.....+..+... ....+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~-al~~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQL-MLHELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHH-HHHHhc
Confidence 346899999999999999999887653322233444443332 223444456666777776554434333332 223333
Q ss_pred cCCcEEEEEccc
Q 002133 251 KKKRVLVILDDI 262 (961)
Q Consensus 251 ~~kr~LlVlDdv 262 (961)
..-++++|..
T Consensus 269 --~~d~VLIDTa 278 (420)
T PRK14721 269 --GKHMVLIDTV 278 (420)
T ss_pred --CCCEEEecCC
Confidence 2356677764
No 331
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.87 E-value=0.21 Score=51.81 Aligned_cols=93 Identities=27% Similarity=0.174 Sum_probs=60.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh--hcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCcc-----C-CCCH-----
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV--KEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEIV-----R-PDSL----- 238 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~-~~~~----- 238 (961)
-..++|.|-.|+|||+|+..+.+... .+.+-+.++++-+.+.. +..++..++...-..+.. . .++.
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 34589999999999999999987754 12235788899887664 566777776654222110 0 0111
Q ss_pred -HHHHHHHHHHHHc--CCcEEEEEcccccc
Q 002133 239 -VEKANQLRQALKK--KKRVLVILDDIWTQ 265 (961)
Q Consensus 239 -~~~~~~l~~~l~~--~kr~LlVlDdv~~~ 265 (961)
......+-++++. ++++|+++||+..-
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1122335666653 58999999998654
No 332
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.84 E-value=0.026 Score=56.59 Aligned_cols=109 Identities=11% Similarity=0.122 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHH-HHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWK-EICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (961)
.++.|+|+.|.||||++..+...... .....+++- .++.... .-...+..+-.... +.....+.+...++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t~-e~~~E~~~~~~~~~i~q~~vg~----~~~~~~~~i~~aLr~- 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILTI-EDPIEFVHESKRSLINQREVGL----DTLSFENALKAALRQ- 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEEE-cCCccccccCccceeeecccCC----CccCHHHHHHHHhcC-
Confidence 36899999999999999998876642 233334332 2211100 00001111111110 112233445555654
Q ss_pred CcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecchhh
Q 002133 253 KRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV 300 (961)
Q Consensus 253 kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v 300 (961)
..=.+++|++.+.+.+...... ...|..++.|+....+
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~----------a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTA----------AETGHLVMSTLHTNSA 111 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHH----------HHcCCEEEEEecCCcH
Confidence 4568899999876554432221 1234457777765544
No 333
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.83 E-value=0.037 Score=51.34 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=35.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCc
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEI 232 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 232 (961)
+|.|-|++|.||||+|+.++++..-+ | + +.-.++++|++..|++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999987632 1 1 23467888888887753
No 334
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.82 E-value=0.22 Score=59.58 Aligned_cols=155 Identities=14% Similarity=0.156 Sum_probs=78.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (961)
+-|.++|++|+|||++|+.++..... .| +.++.++ +.. +. .+. . ......+.+..+...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~--~f---~~is~~~------~~~-~~--~g~------~-~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSD------FVE-MF--VGV------G-ASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--CE---EEEehHH------hHH-hh--hcc------c-HHHHHHHHHHHHhcC
Confidence 34889999999999999999887653 22 2232221 111 10 010 1 112222333333346
Q ss_pred cEEEEEcccccccccc------------cccCCCCCCCcccccCCCceEEEEEecchhhhhhcC----CCCceEEccCCC
Q 002133 254 RVLVILDDIWTQINLD------------DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLA 317 (961)
Q Consensus 254 r~LlVlDdv~~~~~~~------------~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~ 317 (961)
+.+|++|+++....-. .....+.. ....+....+.-+|.||.......... .-...+.+..-+
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~-~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV-EMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHH-hhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 7899999986541100 00000000 000111334555666776655432111 224577888888
Q ss_pred HHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCc
Q 002133 318 DGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL 352 (961)
Q Consensus 318 ~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 352 (961)
.++-.+++..+.......++.. ...+++.+.|.
T Consensus 324 ~~~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 324 VRGREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 8888888888775432222211 23455555553
No 335
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.82 E-value=0.027 Score=57.21 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 336
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.81 E-value=0.031 Score=55.48 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
||.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999988653
No 337
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.81 E-value=0.29 Score=53.24 Aligned_cols=88 Identities=28% Similarity=0.259 Sum_probs=53.0
Q ss_pred CccEEEEEcCCCCcHH-HHHHHHHHHHhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKT-TLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQAL 249 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 249 (961)
+-++|++||+.|+||| |||+..+.-....+ -..+..++.... ....+-++..++-++++..-..+..+....+. .+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~-~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE-AL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH-Hh
Confidence 4789999999999997 56666655542222 234555655432 35566677777778887665544444444333 33
Q ss_pred HcCCcEEEEEcccc
Q 002133 250 KKKKRVLVILDDIW 263 (961)
Q Consensus 250 ~~~kr~LlVlDdv~ 263 (961)
+. .=+|.+|-+.
T Consensus 280 ~~--~d~ILVDTaG 291 (407)
T COG1419 280 RD--CDVILVDTAG 291 (407)
T ss_pred hc--CCEEEEeCCC
Confidence 32 2456667553
No 338
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.81 E-value=0.065 Score=64.55 Aligned_cols=102 Identities=15% Similarity=0.221 Sum_probs=59.4
Q ss_pred ccCCchHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 153 HFPSRNPVFQKMMESLRD-------S--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
.++|.++.++.+.+.+.. . ....+.++|+.|+|||++|+.++.... . ..+.++++...+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~---~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I---ELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C---CcEEeechhhccccc----
Confidence 467888888888887751 1 134688999999999999999988763 1 234555554322111
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
+.+-+|.+..-. . .+....+.+.++.....+|+||+++..
T Consensus 530 ~~~LiG~~~gyv-g-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYV-G-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCcc-c-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 111123221100 0 011122344444445579999999865
No 339
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.0073 Score=58.13 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=45.2
Q ss_pred CccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccc
Q 002133 797 PVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRM 873 (961)
Q Consensus 797 ~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~ 873 (961)
...+++++.|.+.+|.++.+|+-..+. +..|+|+.|+|++|+.+++- ....+..+++|+.|.|.+.+....
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-----~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-----GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-----ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhhc
Confidence 344566677777777777766544332 35677888888888877765 233456677777777776654433
No 340
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.72 E-value=0.37 Score=48.05 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=37.9
Q ss_pred CCccccCCchHHHHHHHHHh----ccCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 149 RGYVHFPSRNPVFQKMMESL----RDSNVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
.+...++|-+...+.+++.- ......-|.+||.-|+||++|++++.+....+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 34556778776666665543 23344468899999999999999999988754
No 341
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.71 E-value=0.15 Score=53.94 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...-+|+|.|..|+||||+|+.+.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999998876654
No 342
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.69 E-value=0.13 Score=61.42 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=60.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc-----CCCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 246 (961)
.-+++-|.|..|+||||||.+++...... =..++|++....++. ..++++|++.. .....++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 45788999999999999998877654432 245789988887763 36667776532 2224455555555
Q ss_pred HHHHcCCcEEEEEcccccc
Q 002133 247 QALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~~~ 265 (961)
..+++++--+||+|.+...
T Consensus 132 ~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHhhcCCCeEEEEcchhhh
Confidence 6566667789999998643
No 343
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.68 E-value=0.029 Score=56.85 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+...+|+|+|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998764
No 344
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.66 E-value=4.5 Score=44.46 Aligned_cols=61 Identities=26% Similarity=0.311 Sum_probs=41.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEe-cCCCCHHHHHHHHHHHhCCCccC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV-THTPDWKEICGRIADQLGLEIVR 234 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~ 234 (961)
...||-.||.-|.||||-|-.+++..+.++ +.. .-|.+ -..+...+-++.+.++.+++...
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~-~kv-llVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG-KKV-LLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC-Cce-EEEecccCChHHHHHHHHHHHHcCCceec
Confidence 456899999999999999999999988633 322 22222 12334556677888887766443
No 345
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.64 E-value=0.12 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
||.|+|.+|.||||+|+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999988753
No 346
>PTZ00301 uridine kinase; Provisional
Probab=94.60 E-value=0.033 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+.+|+|.|.+|.||||+|+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 347
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.60 E-value=0.03 Score=52.84 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986643
No 348
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.56 E-value=0.31 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
...+.++|+.|+||||+|+.++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999875
No 349
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.55 E-value=0.1 Score=52.54 Aligned_cols=87 Identities=28% Similarity=0.382 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCc-----c-CCCCHHH------
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI-----V-RPDSLVE------ 240 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~-~~~~~~~------ 240 (961)
..++|.|..|+|||+|+.++.+... -+.++++-+.+.. +..++.+++...-..+. . ..+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 4689999999999999999998864 4556888887653 56666666643311110 0 1111111
Q ss_pred HHHHHHHHHH-cCCcEEEEEccccc
Q 002133 241 KANQLRQALK-KKKRVLVILDDIWT 264 (961)
Q Consensus 241 ~~~~l~~~l~-~~kr~LlVlDdv~~ 264 (961)
..-.+-++++ +++.+|+++||+..
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 1122334443 47899999999843
No 350
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.55 E-value=0.067 Score=62.96 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=58.8
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL 228 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 228 (961)
.....++|+++.++.+...+... +.+.++|++|+||||+|+.+.+.... .+++..+|..- ...+...+++.+..++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 34567889999888887776544 46889999999999999999987543 34677788765 3336777888887766
Q ss_pred CC
Q 002133 229 GL 230 (961)
Q Consensus 229 ~~ 230 (961)
|.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 53
No 351
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.54 E-value=0.09 Score=58.74 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=34.9
Q ss_pred cccCCchHHHHHHHHHhc-------cC---------CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 152 VHFPSRNPVFQKMMESLR-------DS---------NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..++|.++.++.+...+. .. .-+.+.++|++|+|||++|+.++....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 347899988887755441 00 124688999999999999999987654
No 352
>PRK08233 hypothetical protein; Provisional
Probab=94.53 E-value=0.031 Score=55.31 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+|+|.|.+|+||||+|..++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998754
No 353
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.53 E-value=0.069 Score=48.72 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=43.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcC
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK 252 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 252 (961)
.+-|.|.|.+|+||||+|.+++....- -|+++++-..-..+....-+... +. .-+.+.....|...+.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~vkEn~l~~gyDE~y~--c~-i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDLVKENNLYEGYDEEYK--CH-ILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhHHhhhcchhccccccc--Cc-cccHHHHHHHHHHHHhcC
Confidence 345889999999999999999965442 37777765433333322222111 11 114556666777766654
Q ss_pred C
Q 002133 253 K 253 (961)
Q Consensus 253 k 253 (961)
.
T Consensus 77 g 77 (176)
T KOG3347|consen 77 G 77 (176)
T ss_pred C
Confidence 3
No 354
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.51 E-value=0.14 Score=59.17 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=57.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC---------------CC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR---------------PD 236 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------~~ 236 (961)
.-+++.|.|++|+|||||+.+++.....+ =..++++...+. ..++.+.+ +.+|.+... ..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 45689999999999999999999887543 345677776654 45555554 455543211 11
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEcccc
Q 002133 237 SLVEKANQLRQALKKKKRVLVILDDIW 263 (961)
Q Consensus 237 ~~~~~~~~l~~~l~~~kr~LlVlDdv~ 263 (961)
..++.+..+.+.+.+.+.-.+|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 235666777777765455677888764
No 355
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.51 E-value=0.06 Score=62.70 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=41.1
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+.+++|++..++.+...+......-+.|+|+.|+|||++|+.+++..+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 44667899999999888877665556678999999999999999987543
No 356
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.51 E-value=0.22 Score=55.61 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=60.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCc------cCCCCH------H
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSL------V 239 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~------~ 239 (961)
-..++|.|.+|+|||+|+.++...... .+-+.++|+-+.+.. ...++..++...-.... ...++. .
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 346899999999999999999887553 345788888886654 56667666654322110 011111 1
Q ss_pred HHHHHHHHHHHc--CCcEEEEEcccccc
Q 002133 240 EKANQLRQALKK--KKRVLVILDDIWTQ 265 (961)
Q Consensus 240 ~~~~~l~~~l~~--~kr~LlVlDdv~~~ 265 (961)
.....+-++++. ++++|+++||+..-
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 223346677764 78999999999653
No 357
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.47 E-value=0.35 Score=43.56 Aligned_cols=45 Identities=11% Similarity=0.350 Sum_probs=33.7
Q ss_pred ccCCchHHHHHHHHHhc----c---CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 153 HFPSRNPVFQKMMESLR----D---SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.++|..-..+.+++.+. + ++.-|++.+|..|+|||.+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45677666666666654 2 344588999999999999999998874
No 358
>PRK06762 hypothetical protein; Provisional
Probab=94.46 E-value=0.037 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.520 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
..+|.|+|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999999999999876
No 359
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.46 E-value=0.086 Score=52.31 Aligned_cols=51 Identities=27% Similarity=0.510 Sum_probs=35.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV 233 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 233 (961)
.|+|+|-||+||||+|..+......++.|+ +.=|+...++++.. ++|+..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL~~-------~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNLPE-------ALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCChHH-------hcCCCCC
Confidence 589999999999999999777766554343 44466666665443 5666654
No 360
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.41 E-value=0.36 Score=51.28 Aligned_cols=53 Identities=23% Similarity=0.182 Sum_probs=37.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
.-.++.|.|.+|+||||++.+++...... +=..++|++.... ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccC--HHHHHHHHHHH
Confidence 34578899999999999999998876532 1245778877663 45666665544
No 361
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.41 E-value=0.081 Score=49.50 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (961)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999998764 455555555554
No 362
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.37 E-value=0.33 Score=50.96 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=51.9
Q ss_pred HHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCC------CH
Q 002133 165 MESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD------SL 238 (961)
Q Consensus 165 ~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~------~~ 238 (961)
.+.+...+..++.|+|..|.|||||+..+.+..... ... +.+... ..+..+ .+.++..+.+..... ..
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~~~-~VI~gD-~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~ 169 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--VPC-AVIEGD-QQTVND--AARIRATGTPAIQVNTGKGCHLD 169 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--CCE-EEECCC-cCcHHH--HHHHHhcCCcEEEecCCCCCcCc
Confidence 334446778999999999999999999999887533 222 222111 112222 223444444322211 12
Q ss_pred HHHHHHHHHHHHcCCcEEEEEccccc
Q 002133 239 VEKANQLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 239 ~~~~~~l~~~l~~~kr~LlVlDdv~~ 264 (961)
...+......|.....-++|+++|.+
T Consensus 170 a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 170 AQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 22333334444433446778898865
No 363
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.37 E-value=0.14 Score=57.47 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=60.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCc------cCCCCH------H
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSL------V 239 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~------~ 239 (961)
-..++|.|.+|+|||||+.++.+..... +-+.++++-+.+.. ...++..++...-.... ...++. .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 3568999999999999999999887643 67888888776543 56667776654322110 001111 1
Q ss_pred HHHHHHHHHHHc--CCcEEEEEcccccc
Q 002133 240 EKANQLRQALKK--KKRVLVILDDIWTQ 265 (961)
Q Consensus 240 ~~~~~l~~~l~~--~kr~LlVlDdv~~~ 265 (961)
.....+-++++. ++.+|+++|++..-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 223345566643 68999999999543
No 364
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.15 Score=54.20 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.-+-|..+|++|.|||-||++||..-..
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 3456889999999999999999987663
No 365
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.039 Score=54.73 Aligned_cols=28 Identities=39% Similarity=0.536 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
++.+|+|.|.+|.||||+|+.++...+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4568999999999999999999998774
No 366
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.31 E-value=0.04 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
++++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 367
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.30 E-value=0.14 Score=52.33 Aligned_cols=121 Identities=19% Similarity=0.191 Sum_probs=66.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-----CCCHHHHHHHHHHHhCCCccCC------CCHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-----TPDWKEICGRIADQLGLEIVRP------DSLV 239 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~~------~~~~ 239 (961)
.+-.+++|||..|+||||+++.+..-... -.+.+++.-.+ .....+-..++++.+|...... -+-.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 34568999999999999999999876653 23344443221 2233445566677766443211 1112
Q ss_pred HHHHH-HHHHHHcCCcEEEEEccccccccc------ccccCCCCCCCcccccCCCceEEEEEecchhhhhh
Q 002133 240 EKANQ-LRQALKKKKRVLVILDDIWTQINL------DDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRI 303 (961)
Q Consensus 240 ~~~~~-l~~~l~~~kr~LlVlDdv~~~~~~------~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~~ 303 (961)
+.+.. +.+.+. -+.-++|.|..-+.-+. -.+...+ ....|-..+..|.+-.++..
T Consensus 114 QrQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dl--------q~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 114 QRQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDL--------QEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHH--------HHHhCCeEEEEEEEHHhhhh
Confidence 22222 333333 36789999987654221 1111111 12345567777777777643
No 368
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.26 E-value=0.17 Score=53.19 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=42.1
Q ss_pred ccccCCchHHHH---HHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCE
Q 002133 151 YVHFPSRNPVFQ---KMMESLRDS--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV 205 (961)
Q Consensus 151 ~~~~~gr~~~~~---~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~ 205 (961)
.+++||..++.+ -|++++... .-+.|.|+|++|.|||+||..+.+.....-+|..
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 467889776543 355665543 3578999999999999999999999987667743
No 369
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.24 E-value=0.41 Score=49.36 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=31.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (961)
.-.++.|.|.+|+||||+|.++......+ -..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 45689999999999999999987654322 346788877543
No 370
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.22 E-value=0.13 Score=48.87 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=62.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC---CCCHHHHHHHHH----HHhCCC--ccCCCCH------
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH---TPDWKEICGRIA----DQLGLE--IVRPDSL------ 238 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~----~~l~~~--~~~~~~~------ 238 (961)
..|-|++..|.||||+|...+-+....+ + .+.++.+-+ ......+++.+- .+.+.. ....+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 4677888889999999999988876433 3 333433322 334444444430 000111 0001111
Q ss_pred HHHHHHHHHHHHcCCcEEEEEcccccccccc-----cccCCCCCCCcccccCCCceEEEEEecchhh
Q 002133 239 VEKANQLRQALKKKKRVLVILDDIWTQINLD-----DIGIPFWDGEKQSVDNQGRWTLLLASRDQHV 300 (961)
Q Consensus 239 ~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~-----~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v 300 (961)
....+..++.+..++-=|||||++-..-.+. .+...+.. ...+.-+|+|.|+..-
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-------rp~~~evIlTGr~~p~ 140 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-------KPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-------CCCCCEEEEECCCCCH
Confidence 1223344455555566799999986542222 11111111 2345679999998653
No 371
>PRK05439 pantothenate kinase; Provisional
Probab=94.22 E-value=0.27 Score=52.39 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...-+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999988664
No 372
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.22 E-value=0.16 Score=48.74 Aligned_cols=25 Identities=44% Similarity=0.499 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
-..+.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999875
No 373
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.19 E-value=0.056 Score=56.66 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=63.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE---ecCCCCHHHHHHHH--HHHhCCCcc-CCCCHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE---VTHTPDWKEICGRI--ADQLGLEIV-RPDSLVEKANQ 244 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i--~~~l~~~~~-~~~~~~~~~~~ 244 (961)
....-++|+|+.|.||||+.+.++..... ....+++. +....+..++...+ +.+...... +..+.......
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHH
Confidence 44567999999999999999999976642 23344442 11111122222111 011110000 00011122334
Q ss_pred HHHHHHcCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecchhh
Q 002133 245 LRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV 300 (961)
Q Consensus 245 l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v 300 (961)
+...+....+-++++|.+...+.+..+.... ..|..||+||....+
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~----------~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEAL----------HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----------hCCCEEEEEechhHH
Confidence 5555554467889999987665554442221 246779999987665
No 374
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.18 E-value=0.12 Score=52.47 Aligned_cols=61 Identities=18% Similarity=0.303 Sum_probs=38.6
Q ss_pred HHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHH
Q 002133 160 VFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEI 220 (961)
Q Consensus 160 ~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 220 (961)
...++++.+. ..+..+|+|.|++|+||+||.-++......+++--.++=|+=|.+++--.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 3445555554 345679999999999999999999999887655445566665655544333
No 375
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.18 E-value=0.06 Score=58.37 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=43.6
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
-++..++|.++.+..|+..+.++...-|.|.|..|+||||+|+.+++-..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34677899999999998888888888788999999999999999988764
No 376
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.039 Score=53.93 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=32.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (961)
..+|+|-||=|+||||||+.++++.+.+ .+.=.+.+++=+..+..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhH
Confidence 4689999999999999999999988632 1223344444444444444
No 377
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.12 E-value=0.074 Score=57.65 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=40.1
Q ss_pred ccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 151 YVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
+..++|.++.+..++-.+.++...-+.|.|..|+||||+++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45688999999888777777767778899999999999999998765
No 378
>PRK06217 hypothetical protein; Validated
Probab=94.10 E-value=0.073 Score=52.73 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCC--CEEEEE
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLF--DVVVDA 209 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv 209 (961)
.|.|.|.+|.||||+|+++...... .+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 4899999999999999999988653 233 445553
No 379
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.10 E-value=0.15 Score=53.83 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=42.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGL 230 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 230 (961)
+.-+++.|+|.+|+|||++|.++....... ...++||+..+. ..++.+.+.+ ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 456799999999999999999999988743 788999998875 3455444443 553
No 380
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.10 E-value=0.2 Score=55.70 Aligned_cols=90 Identities=24% Similarity=0.328 Sum_probs=55.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCc------cCCCCH------
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSL------ 238 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~------ 238 (961)
.-..++|+|..|+|||||++.++... ..+.++.+-+.+.. +..++..+++..-+... ...++.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34578999999999999999998642 24566667666544 45666666554322210 001111
Q ss_pred HHHHHHHHHHHH-cCCcEEEEEcccccc
Q 002133 239 VEKANQLRQALK-KKKRVLVILDDIWTQ 265 (961)
Q Consensus 239 ~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 265 (961)
......+-++++ +++++|+++||+..-
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 112223555553 478999999998653
No 381
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.09 E-value=0.14 Score=58.10 Aligned_cols=87 Identities=23% Similarity=0.212 Sum_probs=51.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCC-CHHHHHHHHHHHHHc
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD-SLVEKANQLRQALKK 251 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 251 (961)
-.++.|.|.+|+|||||+.+++.....+ -..++|++..+. ..++.. -++.++....... ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4589999999999999999999877532 235778876553 333322 2455554321100 000112344444444
Q ss_pred CCcEEEEEccccc
Q 002133 252 KKRVLVILDDIWT 264 (961)
Q Consensus 252 ~kr~LlVlDdv~~ 264 (961)
.+.-+||+|.+..
T Consensus 155 ~~~~lVVIDSIq~ 167 (446)
T PRK11823 155 EKPDLVVIDSIQT 167 (446)
T ss_pred hCCCEEEEechhh
Confidence 4566889997643
No 382
>PRK03839 putative kinase; Provisional
Probab=94.08 E-value=0.045 Score=54.09 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998875
No 383
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.31 Score=48.89 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=46.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKK 251 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 251 (961)
..+-|.++|++|.|||-+|++|+++-.. .|+.|-.. +-+++-+ | .-...+.++.+.-+.
T Consensus 210 ppkgvllygppgtgktl~aravanrtda-------cfirvigs---elvqkyv----g-------egarmvrelf~mart 268 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIRVIGS---ELVQKYV----G-------EGARMVRELFEMART 268 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccCc-------eEEeehhH---HHHHHHh----h-------hhHHHHHHHHHHhcc
Confidence 4556889999999999999999987542 23333221 1122211 1 223345566666667
Q ss_pred CCcEEEEEccccc
Q 002133 252 KKRVLVILDDIWT 264 (961)
Q Consensus 252 ~kr~LlVlDdv~~ 264 (961)
+|-++|.+|.++-
T Consensus 269 kkaciiffdeida 281 (435)
T KOG0729|consen 269 KKACIIFFDEIDA 281 (435)
T ss_pred cceEEEEeecccc
Confidence 7889999998853
No 384
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.04 E-value=0.12 Score=56.65 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=36.1
Q ss_pred cccCCchHHHHHHHHHhccC--------------CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 152 VHFPSRNPVFQKMMESLRDS--------------NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
..++|+++.++.+...+... ..+-|.++|++|+|||++|+.++.....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34678888777766555421 2357889999999999999999988753
No 385
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.04 E-value=0.031 Score=56.64 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999854
No 386
>PRK05973 replicative DNA helicase; Provisional
Probab=94.03 E-value=0.35 Score=49.45 Aligned_cols=49 Identities=22% Similarity=0.112 Sum_probs=35.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (961)
.-.++.|.|.+|+|||++|.++......+ =..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 44678999999999999999998776533 235667766654 45555554
No 387
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.00 E-value=0.39 Score=53.92 Aligned_cols=92 Identities=22% Similarity=0.300 Sum_probs=59.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCc------cCCCCHH------
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSLV------ 239 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~------ 239 (961)
-..++|.|..|+|||||+.++........ -+.++++-+.+.. .+.++..++...-.... ...++..
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999987765432 3567778776543 56677777765422210 0111111
Q ss_pred HHHHHHHHHHH--cCCcEEEEEcccccc
Q 002133 240 EKANQLRQALK--KKKRVLVILDDIWTQ 265 (961)
Q Consensus 240 ~~~~~l~~~l~--~~kr~LlVlDdv~~~ 265 (961)
.....+-++++ +++.+||++|++..-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 22334556663 478999999999643
No 388
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.97 E-value=0.085 Score=49.87 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE 210 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 210 (961)
.||-|.|.+|.||||||+++.......+ ..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 4788999999999999999999988653 3455554
No 389
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.94 E-value=0.13 Score=53.12 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=47.3
Q ss_pred HHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 163 KMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 163 ~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
+++..+. ..+..+|+|.|.+|+||+||.-.+......++|--.++=|+-|..++--.++.+=+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 4444444 45677999999999999999999999998877766777777777776555544443
No 390
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.91 E-value=0.16 Score=57.75 Aligned_cols=88 Identities=24% Similarity=0.196 Sum_probs=50.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCC-CHHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD-SLVEKANQLRQALK 250 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 250 (961)
.-.++.|.|.+|+|||||+.+++......+ ..++|++..+. ..++.. -+..++....... ......+.+.+.+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 346899999999999999999987765432 35778876543 333322 2334443321100 00011234444554
Q ss_pred cCCcEEEEEccccc
Q 002133 251 KKKRVLVILDDIWT 264 (961)
Q Consensus 251 ~~kr~LlVlDdv~~ 264 (961)
+.+.-++|+|.+..
T Consensus 168 ~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 EENPQACVIDSIQT 181 (454)
T ss_pred hcCCcEEEEecchh
Confidence 44556788897654
No 391
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.90 E-value=0.26 Score=53.25 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEec
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (961)
+.+.|+.|.||||+++.+.+.......+ .+.+++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~D 37 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYD 37 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEccc
Confidence 5789999999999999999887632222 23444443
No 392
>PRK00625 shikimate kinase; Provisional
Probab=93.88 E-value=0.048 Score=53.06 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.|.++|+.|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988765
No 393
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.88 E-value=0.047 Score=48.53 Aligned_cols=24 Identities=46% Similarity=0.787 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
|-|+|.+|+|||++|+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999888764
No 394
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.87 E-value=0.24 Score=57.27 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=54.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc------------------
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV------------------ 233 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 233 (961)
.-+++.|.|.+|+||||+|.++...-..+ .=..++||+..+. ..++.+.+ +.++.+..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE~--~~~l~~~~-~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEES--PQDIIKNA-RSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEecC--HHHHHHHH-HHcCCCHHHHhhcCceEEEecCchhc
Confidence 45789999999999999999997664322 1146788888643 44444443 33333211
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCcEEEEEccc
Q 002133 234 -----RPDSLVEKANQLRQALKKKKRVLVILDDI 262 (961)
Q Consensus 234 -----~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 262 (961)
...+.....+.+...+..+++-.+|+|-+
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 01133455566666666656667888854
No 395
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.84 E-value=0.3 Score=50.78 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+..|+|++|+|||+||..++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999988754
No 396
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.0061 Score=58.65 Aligned_cols=88 Identities=15% Similarity=0.044 Sum_probs=50.4
Q ss_pred ccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcC
Q 002133 750 TEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNR 829 (961)
Q Consensus 750 L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 829 (961)
++.++-+++.....-...+ .+++.++.|.+.+|..+.++......+.+|+|+.|+|++|+.+++-.-.-+ .
T Consensus 103 IeaVDAsds~I~~eGle~L---~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L------~ 173 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHL---RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL------L 173 (221)
T ss_pred EEEEecCCchHHHHHHHHH---hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH------H
Confidence 4455555544333222222 566677777777776655554333334577777777777777766532211 4
Q ss_pred cCCCccEEEeecCCCCc
Q 002133 830 SFTNLRIINIEQCHRLK 846 (961)
Q Consensus 830 ~l~~L~~L~l~~c~~L~ 846 (961)
.+++|+.|.|.+.+...
T Consensus 174 ~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhhhhHHHHhcCchhhh
Confidence 57777777777755443
No 397
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.83 E-value=0.46 Score=53.14 Aligned_cols=92 Identities=21% Similarity=0.281 Sum_probs=59.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCc------cCCCCHH------
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEI------VRPDSLV------ 239 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~------ 239 (961)
-..++|.|..|+|||||+.++....... +-+.++++-+.+. ....+++.++...-.... ...++..
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 3568999999999999999998776532 2357778877654 456777777754322211 1111111
Q ss_pred HHHHHHHHHHHc--CCcEEEEEcccccc
Q 002133 240 EKANQLRQALKK--KKRVLVILDDIWTQ 265 (961)
Q Consensus 240 ~~~~~l~~~l~~--~kr~LlVlDdv~~~ 265 (961)
.....+-++++. ++.+|+++||+..-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 123346677754 68999999999653
No 398
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.83 E-value=0.24 Score=53.27 Aligned_cols=31 Identities=26% Similarity=0.556 Sum_probs=26.5
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 170 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
.....+|+|+|++|+||||++..+......+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3457899999999999999999999877654
No 399
>PRK04040 adenylate kinase; Provisional
Probab=93.81 E-value=0.054 Score=53.63 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+|+|+|++|+||||+++.+.....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998763
No 400
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.81 E-value=0.069 Score=51.53 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
..++++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 45789999999999999999999887653
No 401
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.78 E-value=0.13 Score=58.21 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=50.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEE-EEEecCCC-CHHHHHHHHHHHhCCCccCCCC-----HHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVV-DAEVTHTP-DWKEICGRIADQLGLEIVRPDS-----LVEKANQL 245 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~-----~~~~~~~l 245 (961)
-....|+|++|+|||||++.+++.... .+-++.+ .+-|.+.. .+.++.+.+-..+-......+. .....-.+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 345789999999999999999987653 3445444 34445443 3333333220001001111101 11222233
Q ss_pred HHHH-HcCCcEEEEEcccccc
Q 002133 246 RQAL-KKKKRVLVILDDIWTQ 265 (961)
Q Consensus 246 ~~~l-~~~kr~LlVlDdv~~~ 265 (961)
-+++ ..++.+||++|++...
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 4444 3478999999998643
No 402
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.42 Score=47.60 Aligned_cols=28 Identities=39% Similarity=0.485 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+..+-|.++|++|.|||.||++|+++-.
T Consensus 187 dpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 4456688999999999999999998765
No 403
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.73 E-value=0.41 Score=51.65 Aligned_cols=29 Identities=31% Similarity=0.404 Sum_probs=25.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
...+++++|++|+||||++..++.....+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999887643
No 404
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.73 E-value=0.082 Score=53.26 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=40.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEE-------EecCCCCHHHH--HHHHHHHhCCCccC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA-------EVTHTPDWKEI--CGRIADQLGLEIVR 234 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~~~~~~~~~~--~~~i~~~l~~~~~~ 234 (961)
+...|.++||+|.||||+.+.++.+...+..-..++-. ....+.++++. .++.+++.++...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 34578889999999999999999887755332222221 12233345443 45667777666554
No 405
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.71 E-value=0.11 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
|.|.|++|+||||+|+.++....
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998764
No 406
>PRK08149 ATP synthase SpaL; Validated
Probab=93.69 E-value=0.2 Score=55.82 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=54.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCC-------ccCCCC-----H
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLE-------IVRPDS-----L 238 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~-----~ 238 (961)
+-..++|+|..|+|||||++.++.... .+.++...+.. ..++.++..+........ ....+. .
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 445789999999999999999986432 34444444443 335666666666543221 111101 1
Q ss_pred HHHHHHHHHHHH-cCCcEEEEEcccccc
Q 002133 239 VEKANQLRQALK-KKKRVLVILDDIWTQ 265 (961)
Q Consensus 239 ~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 265 (961)
......+-++++ ++|++||++||+..-
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 122333455553 478999999999654
No 407
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.68 E-value=0.24 Score=60.41 Aligned_cols=183 Identities=15% Similarity=0.231 Sum_probs=92.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhh--cC------------CCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCC
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVK--ED------------LFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPD 236 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 236 (961)
.+.+++.|+|+.+.||||+.+.+.-..-. .+ .|+. ++..+...-++..-+.
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lS-------------- 389 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLS-------------- 389 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchh--------------
Confidence 45678999999999999999998654211 01 1221 2222222222211111
Q ss_pred CHHHHHHHHHHHHHc-CCcEEEEEcccccccccc---cccCCCCCCCcccccCCCceEEEEEecchhhhhhcCCCCce--
Q 002133 237 SLVEKANQLRQALKK-KKRVLVILDDIWTQINLD---DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLRINMSNPRI-- 310 (961)
Q Consensus 237 ~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~---~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~-- 310 (961)
+......++...+.. .++-|+++|..-...+.. .+...+-. .+ ...|+.+|+||....++........+
T Consensus 390 tfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile----~l-~~~~~~vIitTH~~el~~~~~~~~~v~~ 464 (782)
T PRK00409 390 TFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILE----YL-RKRGAKIIATTHYKELKALMYNREGVEN 464 (782)
T ss_pred HHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHH----HH-HHCCCEEEEECChHHHHHHHhcCCCeEE
Confidence 111122222333321 356899999986543211 11111000 00 23477899999998776432222221
Q ss_pred EEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHhccCChHHHHHHHHHHHh
Q 002133 311 FSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAINWLRK 380 (961)
Q Consensus 311 ~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~~l~~ 380 (961)
..+. ++. +......+...+. + -...|-.|++++ |+|-.+.--|..+.+.....+++++..+..
T Consensus 465 ~~~~-~d~-~~l~~~Ykl~~G~-~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 465 ASVE-FDE-ETLRPTYRLLIGI-P---GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred EEEE-Eec-CcCcEEEEEeeCC-C---CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1221 111 1110000000111 1 123567888877 799998888888876666677777776654
No 408
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.68 E-value=0.12 Score=47.38 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=29.0
Q ss_pred HHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 160 VFQKMMESLRD--SNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 160 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
+..++.+.+.. ..-.+|.+.|.-|.||||+++.++.....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34444444432 33458999999999999999999988654
No 409
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.62 E-value=0.079 Score=55.58 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
+.|.|+|.+|.||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999998775
No 410
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.58 E-value=0.069 Score=52.41 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...|.++|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998864
No 411
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.58 E-value=0.088 Score=51.72 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
...+|.|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4468999999999999999999998764
No 412
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.57 E-value=0.051 Score=54.68 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
+|+|.|+.|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 413
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.57 E-value=0.44 Score=53.23 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=55.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCc------cCCCCH------
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSL------ 238 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~------ 238 (961)
.-..++|+|..|+|||||++++++... .+.++++-+.+.. ...++..+.+..-+... ...++.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456789999999999999999987653 3455666665543 45566655544322211 001111
Q ss_pred HHHHHHHHHHHH-cCCcEEEEEcccccc
Q 002133 239 VEKANQLRQALK-KKKRVLVILDDIWTQ 265 (961)
Q Consensus 239 ~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 265 (961)
......+-++++ +++.+|+++||+..-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 112223555553 478999999999553
No 414
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.55 E-value=0.35 Score=50.60 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=51.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (961)
...+++++|.+|+||||++..+......+. ..+.+++..... ....-++...+.++.+.....+..+.. ...+.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~-~~l~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMT-RALTYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHH-HHHHHHH
Confidence 447899999999999999999987765322 234555554322 222333444445555543332333333 3333343
Q ss_pred c-CCcEEEEEccccc
Q 002133 251 K-KKRVLVILDDIWT 264 (961)
Q Consensus 251 ~-~kr~LlVlDdv~~ 264 (961)
+ .+.-++++|..-.
T Consensus 151 ~~~~~D~ViIDt~Gr 165 (270)
T PRK06731 151 EEARVDYILIDTAGK 165 (270)
T ss_pred hcCCCCEEEEECCCC
Confidence 2 2457788887643
No 415
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.55 E-value=0.055 Score=53.21 Aligned_cols=23 Identities=39% Similarity=0.720 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 416
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.54 E-value=1.3 Score=46.63 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=29.7
Q ss_pred HHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 160 VFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 160 ~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.-+.+...+..+++ ....++|+.|+||+++|..++...-
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 34566666665554 4677999999999999999987763
No 417
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.50 E-value=0.12 Score=59.48 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=41.8
Q ss_pred ccccCCchHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE
Q 002133 151 YVHFPSRNPVFQKMMESLRD-----SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE 210 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 210 (961)
..++.-..+-++++..||.. ...+++.+.|++|+||||.++.+++... |+.+=|.+
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 34444455667777777762 2356899999999999999999998865 66667864
No 418
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.48 E-value=0.096 Score=56.66 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=38.8
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
++..++|.++.++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 466789999998887755544555568899999999999999998765
No 419
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.44 E-value=0.18 Score=56.27 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=51.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh-----CCCccCCCCH------HH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL-----GLEIVRPDSL------VE 240 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~~------~~ 240 (961)
.-..++|+|..|+|||||++.+..... ....+++..-....++.++....+... +.-....++. ..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 345799999999999999998875432 123445554334445555544443322 1111111111 11
Q ss_pred HHHHHHHHHH-cCCcEEEEEcccccc
Q 002133 241 KANQLRQALK-KKKRVLVILDDIWTQ 265 (961)
Q Consensus 241 ~~~~l~~~l~-~~kr~LlVlDdv~~~ 265 (961)
..-.+-++++ +++.+|+++||+..-
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 2223445553 378999999998653
No 420
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.43 E-value=0.25 Score=47.37 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.-..+-++|+.|.||||+.+.+|...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 4467899999999999999999988764
No 421
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.42 E-value=0.048 Score=49.10 Aligned_cols=24 Identities=50% Similarity=0.616 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
|.|+|.+|+||||+|+.++.....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 579999999999999999988763
No 422
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.41 E-value=0.43 Score=53.57 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=54.7
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHHhh-----cCCCCEEEEEEecCCCCHHHHHHHHHHHhC-CCcc------CCCCHH
Q 002133 173 VNMIGLYGMGGVGKTTLV-KVVARQVVK-----EDLFDVVVDAEVTHTPDWKEICGRIADQLG-LEIV------RPDSLV 239 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~------~~~~~~ 239 (961)
-..++|.|-.|+|||+|| -.+.+.... .++-+.++++-+.+......-+.+.++.-+ ++.. ..++..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 345899999999999997 556666522 124467889988877643332444444433 1110 011111
Q ss_pred ------HHHHHHHHHHH-cCCcEEEEEcccccc
Q 002133 240 ------EKANQLRQALK-KKKRVLVILDDIWTQ 265 (961)
Q Consensus 240 ------~~~~~l~~~l~-~~kr~LlVlDdv~~~ 265 (961)
-....+-++++ +++.+|+|+||+..-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 11223445553 478999999999653
No 423
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.4 Score=57.76 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=64.8
Q ss_pred cccCCchHHHHHHHHHhcc------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLRD------S--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
..++|.++.+..|.+.+.. + ..-...+.|+.|+|||-||++++...- +..+..+-++.+....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSEFQE------- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhhhhh-------
Confidence 3467888888888887762 1 244678899999999999999998764 3345566666665322
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
+.+..+.+. +- -..+...++-+.++...-.+|+||||+..
T Consensus 633 vskligsp~-gy-vG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSPP-GY-VGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCCc-cc-ccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 222222221 11 11223346667776655567778999876
No 424
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.40 E-value=0.16 Score=60.04 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=51.9
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLG 229 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 229 (961)
-...++|+++.++.+...+... +.+.++|+.|+||||+|+.+.+..... .|...+++.-+ ..+...+++.+...++
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 3567889998888777776544 355699999999999999999877543 33333333222 2244566777776665
Q ss_pred C
Q 002133 230 L 230 (961)
Q Consensus 230 ~ 230 (961)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 4
No 425
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.39 E-value=0.069 Score=52.72 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+++|+|+.|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 426
>PF13245 AAA_19: Part of AAA domain
Probab=93.38 E-value=0.19 Score=41.21 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=18.7
Q ss_pred CccEEEEEcCCCCcHHH-HHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTT-LVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTt-La~~v~~~~ 197 (961)
+-+++.|.|++|.|||+ ++..+.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678889999999995 444454444
No 427
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.37 E-value=0.25 Score=55.02 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=35.2
Q ss_pred cccCCchHHHHHHHHHhc-------c-------C----CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 152 VHFPSRNPVFQKMMESLR-------D-------S----NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~-------~-------~----~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..++|.++.++.+...+. . + ....+.++|++|+|||++|+.++....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 446899988887765541 1 1 124689999999999999999997654
No 428
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.36 E-value=0.71 Score=48.06 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=36.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
-.++.|.|.+|+|||++|.+++........ ..++|++... +..++...++.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHHH
Confidence 358899999999999999999887664322 3567776655 35566666653
No 429
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.31 E-value=0.73 Score=49.83 Aligned_cols=39 Identities=28% Similarity=0.621 Sum_probs=30.3
Q ss_pred HHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 162 QKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 162 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
.++++.+. .....+|+|.|.+|+||||++..+.......
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34455443 3456799999999999999999998887754
No 430
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.30 E-value=0.08 Score=52.07 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
+|+|.|..|+||||+|+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988764
No 431
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.28 E-value=0.18 Score=61.26 Aligned_cols=61 Identities=10% Similarity=0.212 Sum_probs=42.5
Q ss_pred ccccCCchHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC
Q 002133 151 YVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (961)
...++|+...+..+.+.+. ...-..|.|+|..|+|||++|+.+++..... -...+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 4568899988888766665 2333468899999999999999998765321 12334555554
No 432
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.25 E-value=0.069 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+|.|+|+.|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 433
>PRK14529 adenylate kinase; Provisional
Probab=93.23 E-value=0.29 Score=49.65 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=45.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCCE--EEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCC
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDV--VVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (961)
|.|.|++|+||||+|+.++...... |.+. .+.-.+..........++++..-.. ...+-....+.+.+.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~l-----vpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGDL-----VPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccCc-----chHHHHHHHHHHHHhccC
Confidence 7889999999999999999887632 2321 1111222223333444444433111 133334455666665422
Q ss_pred cEEEEEccccc
Q 002133 254 RVLVILDDIWT 264 (961)
Q Consensus 254 r~LlVlDdv~~ 264 (961)
..-+|||..-.
T Consensus 77 ~~g~iLDGfPR 87 (223)
T PRK14529 77 KNGWLLDGFPR 87 (223)
T ss_pred CCcEEEeCCCC
Confidence 34578898743
No 434
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.22 E-value=0.063 Score=29.64 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=6.9
Q ss_pred CCcEEEeccCcCCccc
Q 002133 605 KLEILSFRNSHIEQLP 620 (961)
Q Consensus 605 ~L~~L~l~~~~l~~lp 620 (961)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666666555554
No 435
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.16 E-value=0.074 Score=50.21 Aligned_cols=20 Identities=45% Similarity=0.757 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVA 194 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~ 194 (961)
.|+|.|.+|+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 436
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.16 E-value=0.41 Score=53.39 Aligned_cols=90 Identities=22% Similarity=0.310 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCc------cCCCCHH-----
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSLV----- 239 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~----- 239 (961)
+-..++|.|..|+|||||.+.+++... .+.++++-+.+.. ...++....+..-+... ...++..
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 445789999999999999999987643 4677788776553 55565555443222110 0011111
Q ss_pred -HHHHHHHHHHH-cCCcEEEEEcccccc
Q 002133 240 -EKANQLRQALK-KKKRVLVILDDIWTQ 265 (961)
Q Consensus 240 -~~~~~l~~~l~-~~kr~LlVlDdv~~~ 265 (961)
.....+-++++ +++++|+++||+..-
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11223555553 478999999998643
No 437
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.10 E-value=0.15 Score=50.39 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=32.2
Q ss_pred ccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 151 YVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
+.+++|.+..+..+.-.... ..-+.++|+.|+|||++|+.+..-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 45688998887776555433 357899999999999999998754
No 438
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.09 E-value=0.25 Score=54.40 Aligned_cols=76 Identities=18% Similarity=0.162 Sum_probs=47.3
Q ss_pred cccCCchHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhc-CCCCEEEEEEe-cCCC
Q 002133 152 VHFPSRNPVFQKMMESLRD--------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKE-DLFDVVVDAEV-THTP 215 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~-~~~~ 215 (961)
..++|.++.++.+..++.. ...+.+.++|+.|+|||++|+.+....... -+++..-|... ....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 3477888888887776632 013578999999999999999999886531 01222212211 2223
Q ss_pred CHHHHHHHHHHH
Q 002133 216 DWKEICGRIADQ 227 (961)
Q Consensus 216 ~~~~~~~~i~~~ 227 (961)
+...+++++...
T Consensus 95 d~e~~ir~L~~~ 106 (443)
T PRK05201 95 DVESIIRDLVEI 106 (443)
T ss_pred CHHHHHHHHHHH
Confidence 555666666543
No 439
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.09 E-value=0.064 Score=56.54 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=33.9
Q ss_pred HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHH
Q 002133 162 QKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEI 220 (961)
Q Consensus 162 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 220 (961)
..+++.+...+. -+.++|+.|+|||++++......... .| ...-++.+...+...+
T Consensus 23 ~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~ 78 (272)
T PF12775_consen 23 SYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQL 78 (272)
T ss_dssp HHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHH
T ss_pred HHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHH
Confidence 445555555544 56899999999999999987654322 11 2334555554444443
No 440
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.08 E-value=0.39 Score=54.14 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=58.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCcc------------C-CCCH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEIV------------R-PDSL 238 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------------~-~~~~ 238 (961)
-..++|.|-.|+|||||+.++...... .+=+.++++-+.+.. ...++..++...--.... . .++.
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 346899999999999999999887432 123788888887654 566777766652211110 0 0111
Q ss_pred ------HHHHHHHHHHHHc-CC-cEEEEEcccccc
Q 002133 239 ------VEKANQLRQALKK-KK-RVLVILDDIWTQ 265 (961)
Q Consensus 239 ------~~~~~~l~~~l~~-~k-r~LlVlDdv~~~ 265 (961)
......+-++++. ++ ++||++||+..-
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 1223346677754 44 899999999653
No 441
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.08 E-value=0.19 Score=53.77 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=36.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
.+++.+.|.||+||||+|.+.+-.....+ ..++=|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 46899999999999999999887776543 44666766666666655443
No 442
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.06 E-value=0.084 Score=51.84 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999987753
No 443
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.05 E-value=0.091 Score=56.00 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEec
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (961)
+.|+|+|-||+||||+|..++.....++ + .++-++..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D 37 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCD 37 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCC
Confidence 4689999999999999999999887654 3 23344443
No 444
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.01 E-value=0.05 Score=55.34 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVAR 195 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~ 195 (961)
++++|+|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 445
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.95 E-value=0.37 Score=46.66 Aligned_cols=81 Identities=22% Similarity=0.172 Sum_probs=45.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcC-Cc
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKK-KR 254 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-kr 254 (961)
+.|.|..|.|||++|.++.... ...++++.-.+.++. ++.+.|.+.-...... ....+....+.+.+.+. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~-w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAH-WRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCC-ceEeecHHHHHHHHHhcCCC
Confidence 6789999999999999998651 234566665555543 4555544432222111 11122223444444321 23
Q ss_pred EEEEEcccc
Q 002133 255 VLVILDDIW 263 (961)
Q Consensus 255 ~LlVlDdv~ 263 (961)
-.+++|.+.
T Consensus 75 ~~VLIDclt 83 (169)
T cd00544 75 DVVLIDCLT 83 (169)
T ss_pred CEEEEEcHh
Confidence 478999873
No 446
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.95 E-value=0.1 Score=49.89 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEE
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVD 208 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w 208 (961)
|++|+|+.|+||||++.++....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 58999999999999999999988754 3544443
No 447
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.92 E-value=0.077 Score=50.58 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
++.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998763
No 448
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=0.52 Score=54.22 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=48.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCc
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKR 254 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr 254 (961)
-|.++|++|+|||-||.+++.....+ +++|..+ +++.+.+ | ..++.+..+.+.-+.-|+
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~KyI---G-------aSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSKYI---G-------ASEQNVRDLFERAQSAKP 761 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHHHh---c-------ccHHHHHHHHHHhhccCC
Confidence 47899999999999999998765432 5666553 3333332 2 223445556666666689
Q ss_pred EEEEEcccccc
Q 002133 255 VLVILDDIWTQ 265 (961)
Q Consensus 255 ~LlVlDdv~~~ 265 (961)
+.+.+|..++.
T Consensus 762 CiLFFDEfdSi 772 (952)
T KOG0735|consen 762 CILFFDEFDSI 772 (952)
T ss_pred eEEEecccccc
Confidence 99999998765
No 449
>PRK14531 adenylate kinase; Provisional
Probab=92.90 E-value=0.15 Score=50.45 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.|.|+|++|.||||+|+.++....
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 450
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.89 E-value=0.13 Score=50.86 Aligned_cols=37 Identities=35% Similarity=0.410 Sum_probs=28.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEe
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV 211 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 211 (961)
.+++.|+|+.|+|||||++++..... ..|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeecc
Confidence 47899999999999999999998765 34654444443
No 451
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.88 E-value=0.24 Score=54.25 Aligned_cols=64 Identities=23% Similarity=0.221 Sum_probs=47.5
Q ss_pred cCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHH
Q 002133 154 FPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (961)
Q Consensus 154 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (961)
++|+++.+..+...+... +-+.+.|.+|+|||++|+.++..... ..+++.+.......++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCch
Confidence 778888887776666433 34789999999999999999988762 23577777777777665444
No 452
>PRK13947 shikimate kinase; Provisional
Probab=92.87 E-value=0.085 Score=51.61 Aligned_cols=24 Identities=46% Similarity=0.473 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998875
No 453
>PRK13949 shikimate kinase; Provisional
Probab=92.86 E-value=0.089 Score=51.16 Aligned_cols=24 Identities=50% Similarity=0.522 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.|.|+|+.|.||||+++.++....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998765
No 454
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.86 E-value=0.58 Score=52.74 Aligned_cols=93 Identities=23% Similarity=0.155 Sum_probs=58.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCC--CEEEEEEecCC-CCHHHHHHHHHHHhCCCcc------CCCCH-----
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLF--DVVVDAEVTHT-PDWKEICGRIADQLGLEIV------RPDSL----- 238 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~------~~~~~----- 238 (961)
-..++|.|-.|+|||||+.++.+.....+.+ ..++++-+.+. ....+++.++...-..... ..++.
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 3468999999999999999998876432111 15677777654 3566777777643322110 01111
Q ss_pred -HHHHHHHHHHHH--cCCcEEEEEcccccc
Q 002133 239 -VEKANQLRQALK--KKKRVLVILDDIWTQ 265 (961)
Q Consensus 239 -~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 265 (961)
......+-++++ +++++|+++||+..-
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 122334667777 478999999998643
No 455
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.83 E-value=0.079 Score=52.33 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
++++|+|+.|+||||+|+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998743
No 456
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.81 E-value=0.16 Score=50.96 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=25.8
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 170 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
..+..+|+|+|++|+||||+|+.+......
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356679999999999999999999987653
No 457
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.81 E-value=10 Score=40.86 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=33.5
Q ss_pred eEEccCCCHHHHHHHHHHHhCCCCCC--CchhHHHHHHHHhhCCchHHH
Q 002133 310 IFSISTLADGEAKSLFEKIVGDSAKE--SDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 310 ~~~l~~L~~~~s~~Lf~~~~~~~~~~--~~~~~~~~~i~~~c~glPLai 356 (961)
.+++.+++.+|+..++..+....... ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999999877532211 233445567777779998644
No 458
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.80 E-value=0.39 Score=53.56 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=52.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc------CCCCH------H
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV------RPDSL------V 239 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~------~ 239 (961)
.-..++|+|..|+|||||++.+...... ...++...-.....+.++..+.+..-+.+.. ..++. .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 3457899999999999999988865431 2233333333344566666655443222110 01111 1
Q ss_pred HHHHHHHHHHH-cCCcEEEEEcccccc
Q 002133 240 EKANQLRQALK-KKKRVLVILDDIWTQ 265 (961)
Q Consensus 240 ~~~~~l~~~l~-~~kr~LlVlDdv~~~ 265 (961)
.....+-++++ +++.+|+++||+..-
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12223555554 478999999998653
No 459
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.77 E-value=0.6 Score=47.93 Aligned_cols=48 Identities=23% Similarity=0.173 Sum_probs=34.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
.-+++.|.|.+|+|||++|.+++.....+ =..++|++.... ..++.+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~--~~~l~~~ 62 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEER--EERILGY 62 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC--HHHHHHH
Confidence 35689999999999999999998765432 245778877664 4444444
No 460
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.71 E-value=0.12 Score=52.43 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=26.9
Q ss_pred hccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 168 LRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 168 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+...++++|+++|+.|+|||||..++.+...
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3356899999999999999999999988754
No 461
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.66 E-value=0.19 Score=48.73 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=30.9
Q ss_pred cCCchHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 154 FPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 154 ~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
++|.+..+.++++.+. .....-|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 3677777777777665 1222456699999999999999999854
No 462
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.65 E-value=0.21 Score=53.45 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=57.0
Q ss_pred cccCCchHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEE----ecCCC---CHH
Q 002133 152 VHFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAE----VTHTP---DWK 218 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----~~~~~---~~~ 218 (961)
.+|+|.++.+++|++.+. +.+-+++.++|+.|.||||||..+.+-... | .+|+- +-+.+ =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 478999999999999886 355689999999999999999999887753 3 33432 21211 134
Q ss_pred HHHHHHHHHhCCCccCCCC
Q 002133 219 EICGRIADQLGLEIVRPDS 237 (961)
Q Consensus 219 ~~~~~i~~~l~~~~~~~~~ 237 (961)
++-.++.+.++....+..+
T Consensus 136 ~~r~~~~~~~~~~i~g~l~ 154 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELC 154 (358)
T ss_pred hHHHHHHHHhCcccCCCcC
Confidence 5556666777775554433
No 463
>PRK14530 adenylate kinase; Provisional
Probab=92.63 E-value=0.1 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987764
No 464
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.63 E-value=0.52 Score=48.60 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
+|+|.|..|+||||+|+++....+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999887643
No 465
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.55 E-value=0.11 Score=49.84 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
|.|+|++|.||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999988764
No 466
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.52 E-value=0.13 Score=48.81 Aligned_cols=30 Identities=27% Similarity=0.561 Sum_probs=26.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCC
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDL 202 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 202 (961)
.+|++|+|+.|.|||||..++....+.+++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~ 31 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGY 31 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCc
Confidence 468999999999999999999999887643
No 467
>PLN02924 thymidylate kinase
Probab=92.51 E-value=0.55 Score=47.77 Aligned_cols=53 Identities=13% Similarity=-0.000 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
-..|+|.|..|+||||+|+.++.....+ .+....+-.-.......+.+++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 3579999999999999999999998864 3444333222222334455555544
No 468
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.49 E-value=0.16 Score=51.63 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKED 201 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 201 (961)
++|+|.|-||+||||++..++......+
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G 28 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMG 28 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCC
Confidence 5789999999999999999998887643
No 469
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.48 E-value=0.075 Score=29.32 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=6.6
Q ss_pred ceeEEEecCCCCCCCC
Q 002133 560 ELLVLHLTGIHFPSLP 575 (961)
Q Consensus 560 ~L~~L~L~~~~~~~lp 575 (961)
+|+.|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 470
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.48 E-value=0.13 Score=48.14 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.++++|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999999887665
No 471
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.48 E-value=0.1 Score=52.27 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.-.+++|+|..|+|||||++.++.-.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 445799999999999999999987654
No 472
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.47 E-value=0.45 Score=55.66 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=56.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC----------------
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR---------------- 234 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 234 (961)
..-+++.|.|.+|+|||++|.++......+ +=..++|++.... ..++.+.+. .++.+...
T Consensus 29 p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee~--~~~i~~~~~-~~g~d~~~~~~~g~l~~~~~~~~~ 104 (509)
T PRK09302 29 PKGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEES--PEDIIRNVA-SFGWDLQKLIDEGKLFILDASPDP 104 (509)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccCC--HHHHHHHHH-HcCCCHHHHhhCCeEEEEecCccc
Confidence 345789999999999999999998765532 1246788887774 445555443 23322100
Q ss_pred -------CCCHHHHHHHHHHHHHcCCcEEEEEccccc
Q 002133 235 -------PDSLVEKANQLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 235 -------~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 264 (961)
..+.......+.+.+...+.-.+|+|.+..
T Consensus 105 ~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 105 SEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred ccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 012234455666665544556689999865
No 473
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.46 E-value=0.41 Score=53.33 Aligned_cols=92 Identities=22% Similarity=0.199 Sum_probs=59.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc--CCCC---------EEEEEEecCCCCHHHHHHHHHHHhC-CCcc------C
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE--DLFD---------VVVDAEVTHTPDWKEICGRIADQLG-LEIV------R 234 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~------~ 234 (961)
-.-++|.|-.|+|||||+.++.+..... ...| .++++-+.+.....+.+.+.+..-+ .... .
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 3468999999999999999998776410 0022 6678888877777776666666555 2210 0
Q ss_pred CCCH------HHHHHHHHHHHH--cCCcEEEEEccccc
Q 002133 235 PDSL------VEKANQLRQALK--KKKRVLVILDDIWT 264 (961)
Q Consensus 235 ~~~~------~~~~~~l~~~l~--~~kr~LlVlDdv~~ 264 (961)
.++. ......+-++++ +++++|+++||+..
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111 112234667776 47999999999954
No 474
>PRK13695 putative NTPase; Provisional
Probab=92.46 E-value=0.19 Score=49.30 Aligned_cols=34 Identities=41% Similarity=0.409 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEE
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (961)
.++|+|.+|+|||||++.+++..... .+...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 37899999999999999999886642 34444344
No 475
>PRK14527 adenylate kinase; Provisional
Probab=92.46 E-value=0.12 Score=51.50 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+..+|.|+|++|.||||+|+.++....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999988765
No 476
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.46 E-value=0.094 Score=49.00 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.++|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998764
No 477
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.45 E-value=0.12 Score=52.38 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999864
No 478
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.45 E-value=0.89 Score=48.82 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=37.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIA 225 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 225 (961)
+-..++|.|..|+|||+|++++.+.. +-+.++++-+.+.. ...+++.++-
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 33578999999999999999998853 34678888886653 5566666653
No 479
>PRK13236 nitrogenase reductase; Reviewed
Probab=92.43 E-value=0.14 Score=54.97 Aligned_cols=32 Identities=31% Similarity=0.591 Sum_probs=27.7
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 002133 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKED 201 (961)
Q Consensus 170 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 201 (961)
+.+.+++++.|-||+||||+|..++.....++
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G 34 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEMG 34 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHCC
Confidence 56779999999999999999999988877643
No 480
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.43 E-value=0.23 Score=53.35 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (961)
+++.+.|-||+||||+|.+.+-....+++ .+.-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~--rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGK--RTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS---EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCC--CeeEeecCCCccHHHHh
Confidence 67899999999999999998887765442 24444555444444433
No 481
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.42 E-value=0.13 Score=50.26 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+.|.|+|+.|.||||+|+.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998754
No 482
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.34 E-value=0.093 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 002133 176 IGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~ 197 (961)
|.|+|+.|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 483
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.34 E-value=0.2 Score=48.01 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
++++|+|..|+|||||+..+......+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999987654
No 484
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.34 E-value=0.12 Score=46.91 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987653
No 485
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.33 E-value=0.15 Score=44.15 Aligned_cols=25 Identities=48% Similarity=0.651 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
++.+.|.+|+||||++..++.....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999998875
No 486
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=92.33 E-value=0.8 Score=53.57 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=56.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc---------------CCC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---------------RPD 236 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------------~~~ 236 (961)
.-.++.|.|.+|+|||++|.+++...... -..++|++.... ..++.+.+ +.+|.+.. ...
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 346 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESY 346 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccC
Confidence 35688999999999999999998776533 356888877664 44444443 44443211 011
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEEccccc
Q 002133 237 SLVEKANQLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 237 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 264 (961)
...+....+.+.+...+.-++|+|.+..
T Consensus 347 ~~~~~~~~i~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 347 GLEDHLIIIKREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 2344555666666554555788998743
No 487
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.29 E-value=0.46 Score=50.79 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=42.6
Q ss_pred ccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHH
Q 002133 153 HFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (961)
.|+=..+....++.++... +.|.|.|+.|+||||+|++++...... .+.|.++...+..++.
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcC
Confidence 4555555666777777432 458999999999999999999987622 2456666655554443
No 488
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.28 E-value=0.47 Score=52.99 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=53.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCC-------ccCCCCH----
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLE-------IVRPDSL---- 238 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~---- 238 (961)
..-..++|+|..|+|||||++.+.+.. +.+..+++.+.+ ...+.+++.+....-... ....+..
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 345678999999999999999888643 345556655544 345556666553321110 0011011
Q ss_pred -HHHHHHHHHHHH-cCCcEEEEEcccccc
Q 002133 239 -VEKANQLRQALK-KKKRVLVILDDIWTQ 265 (961)
Q Consensus 239 -~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 265 (961)
......+-++++ +++++|+++||+..-
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 111223555554 478999999999643
No 489
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.27 E-value=0.56 Score=48.41 Aligned_cols=99 Identities=17% Similarity=0.266 Sum_probs=56.7
Q ss_pred ccCCchHHHHHHHHHhc----c---CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 153 HFPSRNPVFQKMMESLR----D---SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
.++|..-..+.|+..+. + .+.=|++.+|..|+||.-.++.+++.....+.-. .......
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S--------------~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS--------------PFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc--------------hhHHHhh
Confidence 35676666666666665 2 2344899999999999999999998764322100 0111111
Q ss_pred HHhCCCccCC--CCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 226 DQLGLEIVRP--DSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 226 ~~l~~~~~~~--~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
....-+.... .-.++..+.++...+.-+|-+.|+|+|+..
T Consensus 149 at~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 149 ATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1111111110 011233444555555457899999999875
No 490
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.26 E-value=0.67 Score=48.21 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=51.9
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHHhhcCCCCEE-EEEEecCCC-CHHHHHHHHHHHhCCCc------cCCCCHHH---
Q 002133 173 VNMIGLYGMGGVGKTTLV-KVVARQVVKEDLFDVV-VDAEVTHTP-DWKEICGRIADQLGLEI------VRPDSLVE--- 240 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 240 (961)
-..++|.|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. +..++..++...-.... ...++...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 346899999999999996 5555432 23444 666666553 56667666664322110 00111111
Q ss_pred ---HHHHHHHHHH-cCCcEEEEEcccccc
Q 002133 241 ---KANQLRQALK-KKKRVLVILDDIWTQ 265 (961)
Q Consensus 241 ---~~~~l~~~l~-~~kr~LlVlDdv~~~ 265 (961)
..-.+-++++ +++.+||++||+..-
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 1223444554 368999999998654
No 491
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.26 E-value=0.13 Score=51.21 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999874
No 492
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.24 E-value=0.53 Score=45.36 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=64.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEE-E-EEEecCCCCHHHHHHHHH---HHhCC--CccCCCC------HH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVV-V-DAEVTHTPDWKEICGRIA---DQLGL--EIVRPDS------LV 239 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~-~-wv~~~~~~~~~~~~~~i~---~~l~~--~~~~~~~------~~ 239 (961)
...|-|++-.|.||||.|..++.+....+ +.+. + |+.-.........++... .+.+. .....+. ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 35788888899999999999998876543 3322 2 444332334344444320 00111 1111111 12
Q ss_pred HHHHHHHHHHHcCCcEEEEEcccccccccc-----cccCCCCCCCcccccCCCceEEEEEecchhh
Q 002133 240 EKANQLRQALKKKKRVLVILDDIWTQINLD-----DIGIPFWDGEKQSVDNQGRWTLLLASRDQHV 300 (961)
Q Consensus 240 ~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~-----~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v 300 (961)
+..+..++.+..++-=+||||.+-..-.+. ++...+.. ..++.-||+|-|+..-
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~-------rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE-------RPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh-------CCCCCEEEEECCCCCH
Confidence 234445555555667899999986543222 22111111 3345689999998643
No 493
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=0.72 Score=45.91 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
..-.+-+|-|+.|.||||||..+.-++
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999998765
No 494
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.23 E-value=0.11 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999997654
No 495
>PRK13975 thymidylate kinase; Provisional
Probab=92.23 E-value=0.12 Score=51.75 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..|+|.|+.|+||||+|+.++....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998875
No 496
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.22 E-value=0.095 Score=53.29 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=59.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc---CCCCHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---RPDSLVEKANQLRQA 248 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 248 (961)
..+++.|.|+.|.||||+.+.+....-. .+-.+.+|..-..- ....+|...++.... ....-.....++...
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~l-a~~G~~v~a~~~~~----~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIM-AQIGSFVPASSATL----SIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCEEEcCceEE----eccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 4568899999999999999999873211 11112223211000 001111111111111 001223334445555
Q ss_pred HHc-CCcEEEEEccccccccc-c------cccCCCCCCCcccccCCCceEEEEEecchhhhh
Q 002133 249 LKK-KKRVLVILDDIWTQINL-D------DIGIPFWDGEKQSVDNQGRWTLLLASRDQHVLR 302 (961)
Q Consensus 249 l~~-~kr~LlVlDdv~~~~~~-~------~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~ 302 (961)
++. .++-|+++|+.-..... + .+...+. ...++.+|++|....++.
T Consensus 105 l~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~--------~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 105 LSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLL--------EEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHH--------hccCCeEEEEcccHHHHH
Confidence 542 46899999997433210 0 1111111 235788999999988764
No 497
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.22 E-value=0.19 Score=48.60 Aligned_cols=24 Identities=50% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
|.|.|..|+||||+++.++...+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998854
No 498
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.21 E-value=0.12 Score=45.29 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVA 194 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~ 194 (961)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3678999999999999999986
No 499
>PF13479 AAA_24: AAA domain
Probab=92.19 E-value=0.47 Score=48.22 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (961)
.+.|+|.+|+||||+|..+ +..++++....
T Consensus 5 ~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred EEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 5789999999999999866 44567776655
No 500
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.17 E-value=0.14 Score=54.57 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKED 201 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 201 (961)
++|+|+|-||+||||+|..++......+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G 29 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESG 29 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCC
Confidence 5789999999999999999999887543
Done!