Query 002133
Match_columns 961
No_of_seqs 745 out of 4629
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 13:44:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.3E-45 8E-50 429.8 21.0 309 155-492 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 4.1E-37 1.4E-41 360.6 18.5 283 154-484 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 3.7E-36 1.3E-40 391.8 23.8 313 149-491 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 4.6E-33 1.6E-37 331.4 26.7 306 150-488 122-449 (591)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-27 5.9E-32 285.1 24.5 155 509-665 29-194 (606)
6 4ecn_A Leucine-rich repeat pro 100.0 1.8E-27 6.3E-32 288.6 23.2 333 550-915 440-825 (876)
7 4eco_A Uncharacterized protein 99.9 2.9E-27 1E-31 282.7 22.4 369 512-915 81-585 (636)
8 3t6q_A CD180 antigen; protein- 99.9 2.8E-26 9.6E-31 274.6 28.9 296 509-810 30-385 (606)
9 3t6q_A CD180 antigen; protein- 99.9 3.1E-26 1.1E-30 274.1 28.6 133 510-644 55-195 (606)
10 3rgz_A Protein brassinosteroid 99.9 9.4E-27 3.2E-31 285.1 24.4 367 510-915 176-558 (768)
11 4ecn_A Leucine-rich repeat pro 99.9 6.4E-27 2.2E-31 283.8 21.8 348 522-908 435-840 (876)
12 3rgz_A Protein brassinosteroid 99.9 5.9E-27 2E-31 286.9 21.7 266 532-811 267-548 (768)
13 4eco_A Uncharacterized protein 99.9 5.5E-27 1.9E-31 280.4 19.7 343 526-908 197-600 (636)
14 2z63_A TOLL-like receptor 4, v 99.9 1.7E-26 5.8E-31 274.5 22.8 373 509-913 25-511 (570)
15 3v47_A TOLL-like receptor 5B a 99.9 4E-26 1.4E-30 263.0 21.2 362 510-912 28-412 (455)
16 3vq2_A TLR4, TOLL-like recepto 99.9 1.8E-25 6.3E-30 267.4 27.4 364 511-914 55-539 (606)
17 2z7x_B TOLL-like receptor 1, v 99.9 6.5E-25 2.2E-29 257.4 29.2 376 515-914 3-462 (520)
18 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-25 4.2E-30 265.6 23.1 126 511-637 25-158 (549)
19 1o6v_A Internalin A; bacterial 99.9 6.3E-25 2.1E-29 253.2 27.6 343 510-912 44-391 (466)
20 1ziw_A TOLL-like receptor 3; i 99.9 1.7E-24 5.9E-29 262.7 30.9 294 510-811 23-363 (680)
21 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-24 4.6E-29 268.8 30.1 394 502-914 16-498 (844)
22 2z81_A CD282 antigen, TOLL-lik 99.9 2.8E-25 9.7E-30 262.5 21.1 148 517-666 10-162 (549)
23 3o6n_A APL1; leucine-rich repe 99.9 1.2E-24 4.2E-29 244.8 25.3 304 530-906 41-350 (390)
24 4fmz_A Internalin; leucine ric 99.9 8.4E-24 2.9E-28 234.1 29.6 303 510-906 42-344 (347)
25 3oja_B Anopheles plasmodium-re 99.9 2.4E-24 8.1E-29 256.1 25.3 304 530-906 47-356 (597)
26 4g8a_A TOLL-like receptor 4; l 99.9 2E-24 6.7E-29 260.4 24.9 144 509-654 49-199 (635)
27 2z7x_B TOLL-like receptor 1, v 99.9 7.8E-25 2.7E-29 256.8 20.5 355 511-908 20-481 (520)
28 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-24 8.3E-29 266.5 25.8 189 515-711 7-216 (844)
29 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-23 3.7E-28 255.6 30.7 265 510-786 47-364 (680)
30 2id5_A Lingo-1, leucine rich r 99.9 2.5E-24 8.6E-29 249.4 22.4 308 516-871 15-333 (477)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-23 3.9E-28 248.9 27.8 144 514-664 33-181 (562)
32 2z63_A TOLL-like receptor 4, v 99.9 5.9E-24 2E-28 252.5 25.1 151 514-668 9-165 (570)
33 3v47_A TOLL-like receptor 5B a 99.9 2.7E-23 9.3E-28 239.3 28.7 349 514-914 12-389 (455)
34 1o6v_A Internalin A; bacterial 99.9 2.2E-23 7.4E-28 240.3 26.7 322 508-874 64-390 (466)
35 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-23 7.4E-28 238.2 23.9 339 510-914 40-393 (457)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-23 3.9E-28 248.9 20.3 124 510-638 50-180 (562)
37 4fmz_A Internalin; leucine ric 99.9 1E-22 3.5E-27 225.4 26.7 297 522-913 32-328 (347)
38 4g8a_A TOLL-like receptor 4; l 99.9 9E-23 3.1E-27 245.8 26.5 149 516-667 35-188 (635)
39 2id5_A Lingo-1, leucine rich r 99.9 4.9E-23 1.7E-27 238.5 22.6 290 509-843 29-331 (477)
40 3o6n_A APL1; leucine-rich repe 99.9 4.5E-23 1.5E-27 232.1 21.0 298 510-869 43-350 (390)
41 3oja_B Anopheles plasmodium-re 99.9 1E-22 3.5E-27 242.0 21.6 298 511-870 50-357 (597)
42 3bz5_A Internalin-J, INLJ; leu 99.9 3.8E-22 1.3E-26 227.9 21.2 295 532-905 40-349 (457)
43 1jl5_A Outer protein YOPM; leu 99.9 3.3E-21 1.1E-25 219.9 26.1 316 512-907 91-408 (454)
44 1jl5_A Outer protein YOPM; leu 99.9 4.3E-22 1.5E-26 227.3 18.7 323 511-907 10-369 (454)
45 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-21 4.1E-26 215.1 19.8 289 535-906 34-331 (332)
46 1xku_A Decorin; proteoglycan, 99.9 1.3E-20 4.5E-25 206.7 26.3 290 535-905 32-329 (330)
47 1xku_A Decorin; proteoglycan, 99.9 8.9E-21 3.1E-25 208.0 22.1 292 513-868 32-329 (330)
48 4fcg_A Uncharacterized protein 99.9 1.4E-20 4.8E-25 205.4 20.0 150 511-664 80-241 (328)
49 1ogq_A PGIP-2, polygalacturona 99.8 6E-21 2E-25 207.2 15.3 245 512-815 50-305 (313)
50 2ft3_A Biglycan; proteoglycan, 99.8 3.2E-20 1.1E-24 203.8 20.4 292 513-869 34-331 (332)
51 4fcg_A Uncharacterized protein 99.8 3E-20 1E-24 202.8 17.9 107 559-665 81-196 (328)
52 1ogq_A PGIP-2, polygalacturona 99.8 3.8E-20 1.3E-24 200.8 17.7 250 534-912 50-308 (313)
53 3g06_A SSPH2 (leucine-rich rep 99.8 2.5E-19 8.5E-24 210.5 25.9 261 511-873 39-299 (622)
54 2z80_A TOLL-like receptor 2, v 99.8 3E-20 1E-24 205.8 16.6 277 516-873 35-316 (353)
55 3zyj_A Leucine-rich repeat-con 99.8 2.5E-19 8.6E-24 204.7 21.0 168 513-690 44-215 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 2.7E-19 9.1E-24 205.2 21.0 168 513-690 55-226 (452)
57 2z80_A TOLL-like receptor 2, v 99.8 1.6E-19 5.5E-24 199.9 16.6 277 532-910 29-316 (353)
58 2z66_A Variable lymphocyte rec 99.8 4.8E-19 1.6E-23 192.0 15.1 240 515-811 10-258 (306)
59 3ogk_B Coronatine-insensitive 99.8 1.9E-20 6.5E-25 223.4 3.7 354 532-911 110-528 (592)
60 3zyj_A Leucine-rich repeat-con 99.8 2.3E-18 7.8E-23 196.7 20.7 242 536-870 45-291 (440)
61 3zyi_A Leucine-rich repeat-con 99.8 2.2E-18 7.4E-23 197.7 20.5 242 536-870 56-302 (452)
62 1z7x_W Ribonuclease inhibitor; 99.8 1.8E-20 6.3E-25 216.1 3.0 333 510-869 26-409 (461)
63 1z7x_W Ribonuclease inhibitor; 99.8 8.9E-21 3E-25 218.7 0.3 166 724-906 227-409 (461)
64 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-18 4.4E-23 186.4 16.4 219 515-787 14-237 (285)
65 3ogk_B Coronatine-insensitive 99.8 1.6E-20 5.4E-25 224.1 -0.1 344 512-869 138-524 (592)
66 2p1m_B Transport inhibitor res 99.8 6.2E-20 2.1E-24 219.0 5.1 353 532-907 103-518 (594)
67 1ozn_A Reticulon 4 receptor; N 99.8 2.4E-18 8E-23 184.4 16.4 195 509-711 29-237 (285)
68 3o53_A Protein LRIM1, AGAP0063 99.8 2.5E-19 8.7E-24 194.9 8.0 123 536-667 12-135 (317)
69 3o53_A Protein LRIM1, AGAP0063 99.8 3.8E-19 1.3E-23 193.5 6.1 239 513-817 35-278 (317)
70 2z66_A Variable lymphocyte rec 99.7 5.8E-18 2E-22 183.4 14.9 243 537-843 10-259 (306)
71 3g06_A SSPH2 (leucine-rich rep 99.7 5.9E-17 2E-21 190.3 21.6 232 511-811 60-294 (622)
72 2z62_A TOLL-like receptor 4, v 99.7 6.7E-17 2.3E-21 172.1 18.4 220 516-786 11-235 (276)
73 2o6q_A Variable lymphocyte rec 99.7 9.3E-17 3.2E-21 170.2 19.0 190 513-711 17-217 (270)
74 1p9a_G Platelet glycoprotein I 99.7 5.4E-17 1.9E-21 173.5 17.3 191 511-711 9-207 (290)
75 1wwl_A Monocyte differentiatio 99.7 1.2E-18 4.2E-23 189.0 4.5 127 532-664 41-185 (312)
76 2o6q_A Variable lymphocyte rec 99.7 1.1E-16 3.8E-21 169.6 18.9 181 510-698 35-221 (270)
77 3rfs_A Internalin B, repeat mo 99.7 6.5E-17 2.2E-21 171.6 16.6 193 509-711 38-234 (272)
78 1h6u_A Internalin H; cell adhe 99.7 1.8E-16 6.3E-21 171.2 20.2 187 510-712 39-230 (308)
79 2xwt_C Thyrotropin receptor; s 99.7 3.4E-17 1.2E-21 170.3 12.4 144 521-668 20-172 (239)
80 1wwl_A Monocyte differentiatio 99.7 2.7E-18 9.2E-23 186.3 2.8 151 512-666 43-215 (312)
81 3oja_A Leucine-rich immune mol 99.7 1.5E-17 5E-22 191.7 8.7 233 513-811 35-272 (487)
82 2z62_A TOLL-like receptor 4, v 99.7 1.7E-16 5.9E-21 168.9 15.0 193 510-711 26-236 (276)
83 1h6u_A Internalin H; cell adhe 99.7 6.2E-16 2.1E-20 167.0 18.8 204 518-786 25-228 (308)
84 3rfs_A Internalin B, repeat mo 99.7 4.5E-17 1.5E-21 172.9 9.6 167 513-690 20-189 (272)
85 3m19_A Variable lymphocyte rec 99.7 6E-16 2E-20 162.0 17.8 170 512-690 14-187 (251)
86 2p1m_B Transport inhibitor res 99.7 4.4E-18 1.5E-22 202.9 1.0 345 511-870 104-518 (594)
87 1p9a_G Platelet glycoprotein I 99.7 5E-16 1.7E-20 166.0 16.2 178 510-698 29-211 (290)
88 1h6t_A Internalin B; cell adhe 99.7 9.8E-16 3.3E-20 163.9 17.7 165 510-690 44-208 (291)
89 3oja_A Leucine-rich immune mol 99.7 1.2E-16 4.2E-21 184.0 11.2 164 509-690 55-222 (487)
90 4ay9_X Follicle-stimulating ho 99.7 8.2E-16 2.8E-20 169.6 16.6 149 516-666 13-168 (350)
91 2ast_B S-phase kinase-associat 99.6 2.8E-16 9.6E-21 172.7 11.6 104 559-662 70-178 (336)
92 2xwt_C Thyrotropin receptor; s 99.6 6.1E-16 2.1E-20 160.7 11.7 172 510-690 29-213 (239)
93 3m19_A Variable lymphocyte rec 99.6 2.9E-15 9.9E-20 156.8 16.6 154 510-665 33-192 (251)
94 4ay9_X Follicle-stimulating ho 99.6 1.9E-15 6.5E-20 166.6 15.2 119 537-660 12-136 (350)
95 2ast_B S-phase kinase-associat 99.6 2.4E-16 8.1E-21 173.3 7.6 147 512-662 47-205 (336)
96 1m9s_A Internalin B; cell inva 99.6 4.5E-15 1.5E-19 174.2 17.8 167 509-691 40-206 (605)
97 3e6j_A Variable lymphocyte rec 99.6 8.6E-15 3E-19 150.6 16.5 149 514-665 21-172 (229)
98 2v70_A SLIT-2, SLIT homolog 2 99.6 4.1E-15 1.4E-19 151.9 13.8 149 515-665 14-166 (220)
99 1h6t_A Internalin B; cell adhe 99.6 3.6E-15 1.2E-19 159.5 13.1 183 514-712 26-213 (291)
100 2v9t_B SLIT homolog 2 protein 99.6 9.2E-15 3.1E-19 149.3 14.2 148 515-665 14-165 (220)
101 4glp_A Monocyte differentiatio 99.6 1.9E-15 6.5E-20 163.7 9.2 78 559-636 91-178 (310)
102 4ezg_A Putative uncharacterize 99.6 1.2E-14 4E-19 145.9 13.7 149 510-665 42-194 (197)
103 2qen_A Walker-type ATPase; unk 99.6 8.5E-14 2.9E-18 153.7 21.2 293 148-485 8-349 (350)
104 1xeu_A Internalin C; cellular 99.6 8.7E-15 3E-19 153.9 11.4 163 511-690 18-180 (263)
105 1xeu_A Internalin C; cellular 99.6 1.8E-14 6.3E-19 151.4 13.4 151 509-668 38-188 (263)
106 4glp_A Monocyte differentiatio 99.5 1.2E-14 4.3E-19 157.2 12.1 190 511-711 90-306 (310)
107 2ca6_A RAN GTPase-activating p 99.5 4E-15 1.4E-19 166.7 7.6 234 511-786 31-314 (386)
108 4ezg_A Putative uncharacterize 99.5 3.5E-14 1.2E-18 142.4 13.6 145 532-690 42-189 (197)
109 1m9s_A Internalin B; cell inva 99.5 1.4E-14 4.8E-19 170.0 12.3 184 513-712 22-210 (605)
110 3goz_A Leucine-rich repeat-con 99.5 1.5E-14 5.2E-19 160.3 11.5 84 536-619 24-124 (362)
111 2ca6_A RAN GTPase-activating p 99.5 2.5E-15 8.6E-20 168.4 4.9 251 519-812 16-314 (386)
112 2o6s_A Variable lymphocyte rec 99.5 9.6E-14 3.3E-18 140.6 16.1 146 515-663 10-159 (208)
113 3cvr_A Invasion plasmid antige 99.5 7.3E-14 2.5E-18 161.9 16.9 139 512-669 59-197 (571)
114 1w5s_A Origin recognition comp 99.5 5.9E-13 2E-17 150.6 23.4 293 151-467 21-370 (412)
115 2fna_A Conserved hypothetical 99.5 5.2E-13 1.8E-17 147.9 22.2 291 149-484 10-356 (357)
116 2o6s_A Variable lymphocyte rec 99.5 8.3E-14 2.8E-18 141.1 13.6 164 537-711 10-177 (208)
117 2xot_A Amphoterin-induced prot 99.5 4.5E-14 1.5E-18 156.3 12.6 169 515-692 21-199 (361)
118 2xot_A Amphoterin-induced prot 99.5 4.7E-14 1.6E-18 156.1 12.6 153 510-664 37-201 (361)
119 2v9t_B SLIT homolog 2 protein 99.5 1.2E-13 4.1E-18 141.0 13.6 143 537-690 14-160 (220)
120 2ell_A Acidic leucine-rich nuc 99.5 8.1E-14 2.8E-18 135.9 11.6 132 534-668 24-163 (168)
121 3e6j_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 138.7 15.6 146 535-692 20-169 (229)
122 3goz_A Leucine-rich repeat-con 99.5 1.6E-14 5.4E-19 160.1 5.2 155 510-666 20-210 (362)
123 2v70_A SLIT-2, SLIT homolog 2 99.5 3E-13 1E-17 138.0 13.7 143 537-690 14-161 (220)
124 3qfl_A MLA10; coiled-coil, (CC 99.5 1.3E-14 4.4E-19 128.8 2.6 78 15-93 4-82 (115)
125 2je0_A Acidic leucine-rich nuc 99.5 1.6E-13 5.3E-18 130.8 10.0 124 534-660 17-148 (149)
126 2ell_A Acidic leucine-rich nuc 99.4 2.5E-13 8.4E-18 132.4 10.3 132 510-645 22-164 (168)
127 3cvr_A Invasion plasmid antige 99.4 6.4E-13 2.2E-17 154.0 15.4 154 511-691 79-239 (571)
128 2je0_A Acidic leucine-rich nuc 99.4 6.1E-13 2.1E-17 126.7 10.2 130 557-690 15-148 (149)
129 1a9n_A U2A', U2A'; complex (nu 99.4 3E-13 1E-17 132.8 7.9 131 530-664 15-152 (176)
130 2wfh_A SLIT homolog 2 protein 99.4 1.3E-12 4.4E-17 130.2 12.4 122 538-664 14-138 (193)
131 1dce_A Protein (RAB geranylger 99.4 3.5E-14 1.2E-18 165.7 1.1 171 511-688 348-566 (567)
132 4b8c_D Glucose-repressible alc 99.4 1E-12 3.4E-17 158.4 11.2 151 511-665 172-329 (727)
133 1w8a_A SLIT protein; signaling 99.4 3.7E-12 1.2E-16 126.9 13.2 122 515-637 11-136 (192)
134 1w8a_A SLIT protein; signaling 99.4 1.7E-12 5.7E-17 129.4 10.6 124 537-665 11-139 (192)
135 1a9n_A U2A', U2A'; complex (nu 99.3 1.9E-12 6.6E-17 127.0 10.1 131 555-690 15-148 (176)
136 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.1E-16 123.1 13.9 121 515-638 13-137 (193)
137 2qby_B CDC6 homolog 3, cell di 99.3 6.8E-11 2.3E-15 132.1 20.7 244 152-416 20-295 (384)
138 4b8c_D Glucose-repressible alc 99.3 9.1E-13 3.1E-17 158.8 4.8 143 518-663 207-352 (727)
139 1ds9_A Outer arm dynein; leuci 99.3 7.1E-14 2.4E-18 140.3 -5.1 102 532-636 46-149 (198)
140 2o6r_A Variable lymphocyte rec 99.3 2.5E-11 8.5E-16 119.2 13.2 120 515-636 10-133 (177)
141 2o6r_A Variable lymphocyte rec 99.3 2.6E-11 8.9E-16 119.1 13.3 126 535-665 8-137 (177)
142 1dce_A Protein (RAB geranylger 99.3 1.7E-11 5.7E-16 143.0 13.3 120 536-659 443-567 (567)
143 3sb4_A Hypothetical leucine ri 99.2 5.6E-12 1.9E-16 137.5 7.6 289 557-902 23-328 (329)
144 2qby_A CDC6 homolog 1, cell di 99.2 2.1E-10 7.2E-15 128.2 20.7 248 151-416 19-297 (386)
145 2v1u_A Cell division control p 99.2 2.2E-10 7.4E-15 128.2 20.7 292 151-467 18-350 (387)
146 1ds9_A Outer arm dynein; leuci 99.2 2.8E-13 9.5E-18 135.9 -2.7 134 554-690 43-182 (198)
147 1fnn_A CDC6P, cell division co 99.2 1.2E-09 4.2E-14 122.1 24.2 293 152-467 17-350 (389)
148 1njg_A DNA polymerase III subu 99.2 3.4E-10 1.2E-14 117.7 17.0 200 149-363 20-231 (250)
149 2chg_A Replication factor C sm 99.2 4.9E-10 1.7E-14 114.6 17.0 189 149-361 14-205 (226)
150 2r9u_A Variable lymphocyte rec 99.1 1.4E-10 4.7E-15 113.1 11.1 101 562-665 15-118 (174)
151 3g39_A Variable lymphocyte rec 99.1 1.5E-10 5.3E-15 112.4 10.9 102 561-665 11-115 (170)
152 2r9u_A Variable lymphocyte rec 99.1 4.8E-10 1.7E-14 109.2 11.4 96 537-636 15-114 (174)
153 3g39_A Variable lymphocyte rec 99.0 9.9E-10 3.4E-14 106.7 11.3 96 537-636 12-111 (170)
154 3sb4_A Hypothetical leucine ri 99.0 4.6E-10 1.6E-14 122.3 9.2 183 511-704 48-326 (329)
155 1sxj_B Activator 1 37 kDa subu 98.9 7.6E-09 2.6E-13 112.3 14.4 190 149-361 18-211 (323)
156 4fdw_A Leucine rich hypothetic 98.9 3.1E-08 1.1E-12 110.1 18.1 120 534-661 113-235 (401)
157 4fdw_A Leucine rich hypothetic 98.9 4.8E-08 1.6E-12 108.6 19.1 161 512-690 113-279 (401)
158 3un9_A NLR family member X1; l 98.8 1.1E-09 3.9E-14 120.6 3.0 157 509-666 69-253 (372)
159 2ifg_A High affinity nerve gro 98.8 1.1E-08 3.6E-13 112.5 9.9 96 565-663 14-114 (347)
160 1iqp_A RFCS; clamp loader, ext 98.7 2.4E-08 8.1E-13 108.6 10.9 185 149-362 22-214 (327)
161 4fs7_A Uncharacterized protein 98.7 2.6E-07 8.9E-12 103.1 17.5 123 532-662 69-195 (394)
162 3un9_A NLR family member X1; l 98.7 3.8E-09 1.3E-13 116.3 2.4 155 533-690 71-247 (372)
163 4fs7_A Uncharacterized protein 98.7 2.8E-07 9.6E-12 102.8 17.3 296 511-867 70-375 (394)
164 2ifg_A High affinity nerve gro 98.7 4.3E-08 1.5E-12 107.5 9.4 96 539-637 13-113 (347)
165 2chq_A Replication factor C sm 98.6 2.9E-07 9.9E-12 99.5 15.8 185 149-360 14-204 (319)
166 3te6_A Regulatory protein SIR3 98.6 6.2E-07 2.1E-11 94.7 15.9 173 153-330 21-212 (318)
167 1jr3_A DNA polymerase III subu 98.5 9.2E-07 3.2E-11 97.9 15.4 195 150-360 14-221 (373)
168 1jbk_A CLPB protein; beta barr 98.4 5.6E-07 1.9E-11 89.1 10.0 50 150-199 20-69 (195)
169 1hqc_A RUVB; extended AAA-ATPa 98.4 3.7E-06 1.3E-10 91.0 17.1 183 150-363 10-214 (324)
170 1d2n_A N-ethylmaleimide-sensit 98.3 2.1E-05 7.3E-10 82.5 19.3 201 152-382 33-265 (272)
171 3h4m_A Proteasome-activating n 98.3 1.1E-05 3.7E-10 85.5 16.9 203 149-379 14-259 (285)
172 3e4g_A ATP synthase subunit S, 98.3 4.2E-07 1.4E-11 86.6 4.4 68 830-910 83-154 (176)
173 3pvs_A Replication-associated 98.3 1.1E-05 3.7E-10 90.4 16.4 178 149-360 23-215 (447)
174 4gt6_A Cell surface protein; l 98.3 2.5E-05 8.6E-10 86.9 19.1 297 532-868 61-367 (394)
175 1sxj_D Activator 1 41 kDa subu 98.3 5.3E-06 1.8E-10 91.0 13.3 196 149-360 34-235 (353)
176 3e4g_A ATP synthase subunit S, 98.2 3.7E-07 1.3E-11 87.0 3.2 41 832-873 114-154 (176)
177 2ra8_A Uncharacterized protein 98.2 1.4E-06 4.7E-11 95.0 7.8 154 532-690 137-315 (362)
178 2qz4_A Paraplegin; AAA+, SPG7, 98.2 4.3E-05 1.5E-09 79.6 18.6 184 150-359 4-221 (262)
179 1sxj_A Activator 1 95 kDa subu 98.2 6.1E-06 2.1E-10 95.0 12.7 191 149-361 36-254 (516)
180 3d8b_A Fidgetin-like protein 1 98.2 6.5E-05 2.2E-09 82.0 19.5 188 149-361 81-296 (357)
181 3bos_A Putative DNA replicatio 98.2 3.4E-06 1.2E-10 86.9 8.4 177 150-360 26-217 (242)
182 4gt6_A Cell surface protein; l 98.1 7E-05 2.4E-09 83.3 19.1 301 549-905 53-367 (394)
183 1sxj_E Activator 1 40 kDa subu 98.1 1.3E-05 4.6E-10 87.8 12.7 198 149-360 11-237 (354)
184 3pfi_A Holliday junction ATP-d 98.1 8.8E-05 3E-09 80.5 18.6 181 149-360 26-227 (338)
185 3eie_A Vacuolar protein sortin 98.1 0.0001 3.5E-09 79.3 18.7 187 147-360 13-228 (322)
186 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00015 5.3E-09 77.6 19.8 191 149-361 9-224 (322)
187 3vfd_A Spastin; ATPase, microt 98.1 0.00012 3.9E-09 81.2 19.4 188 148-360 111-326 (389)
188 1sxj_C Activator 1 40 kDa subu 98.1 3.4E-05 1.2E-09 83.8 14.7 179 148-356 21-208 (340)
189 1io0_A Tropomodulin; LRR prote 98.1 2.1E-06 7E-11 84.2 4.5 110 555-665 32-164 (185)
190 3b9p_A CG5977-PA, isoform A; A 98.1 0.00023 7.9E-09 75.6 20.6 185 149-360 18-233 (297)
191 3u61_B DNA polymerase accessor 98.0 1.7E-05 5.8E-10 85.7 11.7 174 149-356 23-212 (324)
192 2ra8_A Uncharacterized protein 98.0 4.9E-06 1.7E-10 90.6 6.5 129 532-665 170-320 (362)
193 3syl_A Protein CBBX; photosynt 98.0 1.4E-05 5E-10 85.6 9.8 152 153-330 32-218 (309)
194 2p65_A Hypothetical protein PF 98.0 1.5E-05 5.1E-10 78.1 9.0 50 150-199 20-69 (187)
195 1a5t_A Delta prime, HOLB; zinc 98.0 0.00012 4.2E-09 79.0 16.3 170 157-358 7-203 (334)
196 2qp9_X Vacuolar protein sortin 97.9 0.00017 5.9E-09 78.5 17.3 186 149-360 48-261 (355)
197 2z4s_A Chromosomal replication 97.9 0.00015 5.1E-09 81.3 16.8 183 151-358 104-304 (440)
198 3uk6_A RUVB-like 2; hexameric 97.9 8.3E-05 2.8E-09 81.9 14.5 48 151-198 43-95 (368)
199 1io0_A Tropomodulin; LRR prote 97.9 5.3E-06 1.8E-10 81.3 4.3 109 532-641 34-164 (185)
200 2zan_A Vacuolar protein sortin 97.9 0.00049 1.7E-08 77.3 20.8 187 149-360 131-345 (444)
201 3cf0_A Transitional endoplasmi 97.9 0.00027 9.1E-09 75.1 17.6 180 148-355 11-223 (301)
202 3rw6_A Nuclear RNA export fact 97.9 1.1E-05 3.8E-10 83.1 6.1 62 556-617 167-233 (267)
203 4b4t_J 26S protease regulatory 97.8 0.0005 1.7E-08 74.4 18.3 183 147-353 143-354 (405)
204 3pxg_A Negative regulator of g 97.8 7.3E-05 2.5E-09 84.7 11.9 151 150-330 178-339 (468)
205 3rw6_A Nuclear RNA export fact 97.8 4.4E-06 1.5E-10 86.0 1.6 79 579-658 167-257 (267)
206 4b4t_I 26S protease regulatory 97.7 0.001 3.5E-08 72.2 18.2 185 146-353 176-388 (437)
207 4b4t_L 26S protease subunit RP 97.7 0.0011 3.6E-08 73.1 18.3 184 147-353 176-387 (437)
208 1qvr_A CLPB protein; coiled co 97.7 0.00021 7.3E-09 87.5 13.9 161 149-329 167-345 (854)
209 1l8q_A Chromosomal replication 97.7 0.00045 1.5E-08 74.3 14.8 176 151-354 10-202 (324)
210 4b4t_H 26S protease regulatory 97.6 0.0007 2.4E-08 74.3 15.8 181 149-353 206-415 (467)
211 1lv7_A FTSH; alpha/beta domain 97.6 0.0043 1.5E-07 64.0 21.0 186 149-357 9-222 (257)
212 2gno_A DNA polymerase III, gam 97.6 0.00023 7.9E-09 75.3 11.2 146 156-329 1-152 (305)
213 4b4t_M 26S protease regulatory 97.6 0.00056 1.9E-08 75.2 14.0 179 147-353 176-387 (434)
214 4b4t_K 26S protease regulatory 97.6 0.00097 3.3E-08 73.3 15.7 180 148-353 168-379 (428)
215 3n70_A Transport activator; si 97.6 3.4E-05 1.2E-09 72.1 3.5 45 153-197 2-48 (145)
216 4h09_A Hypothetical leucine ri 97.6 0.0031 1.1E-07 69.4 20.1 112 772-912 237-348 (379)
217 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00087 3E-08 81.2 16.1 158 149-329 183-362 (758)
218 4fcw_A Chaperone protein CLPB; 97.4 0.00048 1.6E-08 73.6 9.8 105 153-265 18-131 (311)
219 3pxi_A Negative regulator of g 97.3 0.00053 1.8E-08 83.0 11.1 151 150-330 178-339 (758)
220 3ec2_A DNA replication protein 97.3 0.0005 1.7E-08 66.7 8.7 89 158-264 20-111 (180)
221 3hu3_A Transitional endoplasmi 97.3 0.0047 1.6E-07 69.8 17.4 182 150-359 202-414 (489)
222 2ce7_A Cell division protein F 97.3 0.0027 9.3E-08 71.1 15.3 176 150-353 14-221 (476)
223 2r62_A Cell division protease 97.3 0.0004 1.4E-08 72.4 7.8 49 150-198 9-69 (268)
224 2w58_A DNAI, primosome compone 97.2 0.00084 2.9E-08 66.5 8.7 96 151-265 24-127 (202)
225 1in4_A RUVB, holliday junction 97.1 0.0077 2.6E-07 64.8 15.7 181 149-359 22-222 (334)
226 1ofh_A ATP-dependent HSL prote 97.1 0.0022 7.4E-08 68.4 11.2 47 152-198 15-75 (310)
227 2c9o_A RUVB-like 1; hexameric 96.9 0.0045 1.5E-07 69.8 12.2 48 151-198 36-88 (456)
228 3cf2_A TER ATPase, transitiona 96.7 0.0052 1.8E-07 73.0 11.5 181 150-354 202-408 (806)
229 3m6a_A ATP-dependent protease 96.7 0.0086 2.9E-07 68.9 13.0 47 152-198 81-133 (543)
230 1ixz_A ATP-dependent metallopr 96.6 0.043 1.5E-06 56.2 16.5 177 149-353 13-221 (254)
231 3pxi_A Negative regulator of g 96.6 0.0025 8.5E-08 77.1 7.4 156 152-329 491-675 (758)
232 1n0w_A DNA repair protein RAD5 96.5 0.0088 3E-07 61.0 9.9 92 172-264 23-130 (243)
233 3io5_A Recombination and repai 96.4 0.012 4E-07 61.1 10.4 86 175-265 30-123 (333)
234 4h09_A Hypothetical leucine ri 96.4 0.012 4.3E-07 64.5 11.5 125 532-662 215-343 (379)
235 3hr8_A Protein RECA; alpha and 96.3 0.014 4.7E-07 62.6 10.6 86 173-265 61-151 (356)
236 1iy2_A ATP-dependent metallopr 96.3 0.099 3.4E-06 54.3 17.2 181 149-353 37-245 (278)
237 2cvh_A DNA repair and recombin 96.3 0.0094 3.2E-07 59.7 8.8 87 172-265 19-117 (220)
238 2z43_A DNA repair and recombin 96.3 0.019 6.4E-07 61.4 11.6 92 172-264 106-214 (324)
239 1r6b_X CLPA protein; AAA+, N-t 96.3 0.01 3.4E-07 71.9 10.5 102 153-265 459-569 (758)
240 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0026 8.8E-08 66.4 4.5 69 173-264 123-193 (331)
241 1v5w_A DMC1, meiotic recombina 96.2 0.02 6.8E-07 61.6 11.3 92 172-264 121-230 (343)
242 2x8a_A Nuclear valosin-contain 96.1 0.014 4.7E-07 60.6 8.9 158 150-330 8-192 (274)
243 1xp8_A RECA protein, recombina 96.1 0.022 7.5E-07 61.5 10.5 87 172-265 73-164 (366)
244 1u94_A RECA protein, recombina 96.0 0.023 7.7E-07 61.2 10.2 86 172-264 62-152 (356)
245 2i1q_A DNA repair and recombin 96.0 0.021 7.2E-07 61.0 10.0 92 172-264 97-215 (322)
246 2dhr_A FTSH; AAA+ protein, hex 96.0 0.046 1.6E-06 61.5 13.1 173 150-353 29-236 (499)
247 2zr9_A Protein RECA, recombina 96.0 0.026 9E-07 60.6 10.5 87 172-265 60-151 (349)
248 2px0_A Flagellar biosynthesis 95.7 0.038 1.3E-06 57.8 10.2 86 172-261 104-190 (296)
249 2qgz_A Helicase loader, putati 95.7 0.02 7E-07 60.5 8.1 51 159-211 135-189 (308)
250 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.047 1.6E-06 55.0 10.6 88 173-265 23-135 (235)
251 1pgv_A TMD-1, tropomodulin TMD 95.6 0.015 5E-07 56.4 6.2 107 556-662 38-167 (197)
252 1qvr_A CLPB protein; coiled co 95.6 0.019 6.6E-07 70.1 8.5 61 152-214 558-627 (854)
253 3co5_A Putative two-component 95.6 0.004 1.4E-07 57.6 1.9 45 152-196 4-50 (143)
254 3lda_A DNA repair protein RAD5 95.5 0.036 1.2E-06 60.6 9.4 92 172-264 177-284 (400)
255 3t15_A Ribulose bisphosphate c 95.5 0.012 3.9E-07 62.0 5.3 26 173-198 36-61 (293)
256 3dm5_A SRP54, signal recogniti 95.5 0.075 2.6E-06 58.4 11.8 29 172-200 99-127 (443)
257 4a74_A DNA repair and recombin 95.3 0.052 1.8E-06 54.6 9.4 91 173-264 25-136 (231)
258 2xxa_A Signal recognition part 95.3 0.092 3.1E-06 58.0 11.9 90 172-262 99-192 (433)
259 3bh0_A DNAB-like replicative h 95.3 0.069 2.4E-06 56.6 10.6 52 172-227 67-118 (315)
260 2bjv_A PSP operon transcriptio 95.2 0.015 5.2E-07 60.2 5.0 62 151-214 5-68 (265)
261 1rz3_A Hypothetical protein rb 95.1 0.023 7.9E-07 55.9 5.9 44 156-199 2-48 (201)
262 1jr3_D DNA polymerase III, del 95.1 0.13 4.3E-06 55.4 12.1 158 171-358 16-183 (343)
263 3c8u_A Fructokinase; YP_612366 95.0 0.022 7.6E-07 56.4 5.4 41 159-199 6-48 (208)
264 1ypw_A Transitional endoplasmi 95.0 0.021 7.1E-07 68.9 6.1 155 150-330 202-386 (806)
265 2ehv_A Hypothetical protein PH 94.9 0.066 2.2E-06 54.6 8.8 25 172-196 29-53 (251)
266 3kl4_A SRP54, signal recogniti 94.8 0.12 4.1E-06 56.8 11.1 58 172-231 96-154 (433)
267 3ice_A Transcription terminati 94.8 0.048 1.7E-06 58.1 7.3 98 163-265 163-273 (422)
268 1g8p_A Magnesium-chelatase 38 94.7 0.02 6.7E-07 62.1 4.5 50 149-198 21-70 (350)
269 2ck3_D ATP synthase subunit be 94.7 0.14 4.7E-06 56.4 11.0 101 163-264 142-264 (482)
270 1pgv_A TMD-1, tropomodulin TMD 94.7 0.023 8E-07 54.9 4.4 105 533-637 40-167 (197)
271 1j8m_F SRP54, signal recogniti 94.6 0.13 4.4E-06 53.8 10.2 88 173-262 98-189 (297)
272 1sky_E F1-ATPase, F1-ATP synth 94.6 0.082 2.8E-06 58.3 9.0 90 174-264 152-256 (473)
273 2dr3_A UPF0273 protein PH0284; 94.6 0.13 4.5E-06 52.1 10.2 47 173-223 23-69 (247)
274 1pzn_A RAD51, DNA repair and r 94.5 0.081 2.8E-06 56.9 8.8 93 172-265 130-243 (349)
275 1ojl_A Transcriptional regulat 94.4 0.034 1.2E-06 58.7 5.3 45 153-197 3-49 (304)
276 1fx0_B ATP synthase beta chain 94.4 0.097 3.3E-06 57.8 8.9 91 173-264 165-277 (498)
277 2kjq_A DNAA-related protein; s 94.4 0.027 9.2E-07 52.3 3.9 40 172-213 35-74 (149)
278 1ls1_A Signal recognition part 94.4 0.15 5.1E-06 53.3 10.1 89 172-262 97-189 (295)
279 4a1f_A DNAB helicase, replicat 94.4 0.19 6.6E-06 53.2 11.0 51 173-227 46-96 (338)
280 3rfe_A Platelet glycoprotein I 94.3 0.069 2.4E-06 48.1 6.5 50 563-614 12-65 (130)
281 1vma_A Cell division protein F 94.3 0.1 3.6E-06 54.7 8.7 88 172-262 103-195 (306)
282 3e70_C DPA, signal recognition 94.2 0.42 1.5E-05 50.5 13.3 59 171-231 127-186 (328)
283 3kb2_A SPBC2 prophage-derived 94.2 0.028 9.6E-07 53.6 3.9 25 174-198 2-26 (173)
284 1qhx_A CPT, protein (chloramph 94.2 0.027 9.1E-07 54.1 3.7 25 174-198 4-28 (178)
285 3cmu_A Protein RECA, recombina 94.2 0.11 3.6E-06 67.5 9.9 86 171-263 1425-1515(2050)
286 3vaa_A Shikimate kinase, SK; s 94.1 0.031 1.1E-06 54.9 4.1 27 172-198 24-50 (199)
287 2r44_A Uncharacterized protein 94.1 0.034 1.2E-06 59.6 4.7 45 152-198 27-71 (331)
288 2j37_W Signal recognition part 94.1 0.39 1.3E-05 53.9 13.3 89 172-262 100-192 (504)
289 3rfe_A Platelet glycoprotein I 94.1 0.074 2.5E-06 47.9 6.1 53 608-663 12-66 (130)
290 1kgd_A CASK, peripheral plasma 93.9 0.033 1.1E-06 53.6 3.7 25 173-197 5-29 (180)
291 3trf_A Shikimate kinase, SK; a 93.8 0.036 1.2E-06 53.5 3.8 26 173-198 5-30 (185)
292 3hws_A ATP-dependent CLP prote 93.8 0.059 2E-06 58.6 5.9 46 153-198 16-76 (363)
293 3lw7_A Adenylate kinase relate 93.8 0.03 1E-06 53.5 3.2 20 174-193 2-21 (179)
294 3uie_A Adenylyl-sulfate kinase 93.7 0.042 1.4E-06 53.9 4.1 30 170-199 22-51 (200)
295 4eun_A Thermoresistant glucoki 93.7 0.041 1.4E-06 54.0 4.1 27 171-197 27-53 (200)
296 1kag_A SKI, shikimate kinase I 93.7 0.033 1.1E-06 53.2 3.2 25 174-198 5-29 (173)
297 2ga8_A Hypothetical 39.9 kDa p 93.7 0.069 2.4E-06 56.6 5.9 44 156-199 3-50 (359)
298 3fwy_A Light-independent proto 93.6 0.048 1.6E-06 57.6 4.6 40 171-212 46-85 (314)
299 1xjc_A MOBB protein homolog; s 93.6 0.073 2.5E-06 50.2 5.4 29 172-200 3-31 (169)
300 1zp6_A Hypothetical protein AT 93.6 0.037 1.3E-06 53.8 3.5 25 172-196 8-32 (191)
301 2hf9_A Probable hydrogenase ni 93.6 0.057 2E-06 54.1 4.9 37 162-198 27-63 (226)
302 1ly1_A Polynucleotide kinase; 93.5 0.04 1.4E-06 53.0 3.5 22 174-195 3-24 (181)
303 3t61_A Gluconokinase; PSI-biol 93.5 0.039 1.3E-06 54.2 3.4 26 173-198 18-43 (202)
304 1um8_A ATP-dependent CLP prote 93.4 0.077 2.6E-06 58.0 6.0 25 174-198 73-97 (376)
305 1odf_A YGR205W, hypothetical 3 93.3 0.091 3.1E-06 54.7 6.1 55 171-225 29-84 (290)
306 1nks_A Adenylate kinase; therm 93.3 0.048 1.6E-06 53.0 3.8 26 174-199 2-27 (194)
307 2b8t_A Thymidine kinase; deoxy 93.3 0.033 1.1E-06 55.3 2.5 113 172-299 11-127 (223)
308 1kht_A Adenylate kinase; phosp 93.3 0.051 1.7E-06 52.7 3.9 26 174-199 4-29 (192)
309 3iij_A Coilin-interacting nucl 93.3 0.048 1.6E-06 52.5 3.6 26 173-198 11-36 (180)
310 2ffh_A Protein (FFH); SRP54, s 93.3 0.27 9.3E-06 53.9 9.9 88 172-262 97-189 (425)
311 2rhm_A Putative kinase; P-loop 93.2 0.055 1.9E-06 52.6 4.0 26 173-198 5-30 (193)
312 2wsm_A Hydrogenase expression/ 93.2 0.06 2.1E-06 53.7 4.4 38 161-198 18-55 (221)
313 1via_A Shikimate kinase; struc 93.2 0.047 1.6E-06 52.2 3.4 25 174-198 5-29 (175)
314 2ze6_A Isopentenyl transferase 93.2 0.05 1.7E-06 55.6 3.8 25 174-198 2-26 (253)
315 3tau_A Guanylate kinase, GMP k 93.2 0.054 1.9E-06 53.5 3.9 27 172-198 7-33 (208)
316 3cf2_A TER ATPase, transitiona 93.1 0.14 4.8E-06 60.8 7.9 95 150-265 475-582 (806)
317 3nbx_X ATPase RAVA; AAA+ ATPas 93.1 0.056 1.9E-06 60.9 4.3 44 153-198 23-66 (500)
318 1ye8_A Protein THEP1, hypothet 93.1 0.06 2E-06 51.6 3.9 25 175-199 2-26 (178)
319 3a00_A Guanylate kinase, GMP k 93.1 0.045 1.5E-06 53.0 3.1 25 174-198 2-26 (186)
320 1knq_A Gluconate kinase; ALFA/ 93.1 0.057 2E-06 51.6 3.8 25 173-197 8-32 (175)
321 4akg_A Glutathione S-transfera 93.1 0.58 2E-05 63.1 14.4 80 174-264 1268-1347(2695)
322 3tr0_A Guanylate kinase, GMP k 93.1 0.057 1.9E-06 53.1 3.9 25 173-197 7-31 (205)
323 1zuh_A Shikimate kinase; alpha 93.0 0.061 2.1E-06 51.0 3.8 27 172-198 6-32 (168)
324 2yvu_A Probable adenylyl-sulfa 93.0 0.081 2.8E-06 51.1 4.7 29 172-200 12-40 (186)
325 2bdt_A BH3686; alpha-beta prot 92.9 0.055 1.9E-06 52.5 3.5 22 174-195 3-24 (189)
326 2qor_A Guanylate kinase; phosp 92.9 0.055 1.9E-06 53.3 3.5 26 172-197 11-36 (204)
327 3asz_A Uridine kinase; cytidin 92.9 0.066 2.3E-06 53.0 4.0 27 172-198 5-31 (211)
328 1gvn_B Zeta; postsegregational 92.9 0.092 3.2E-06 54.7 5.3 26 172-197 32-57 (287)
329 1y63_A LMAJ004144AAA protein; 92.9 0.069 2.4E-06 51.6 4.0 25 172-196 9-33 (184)
330 2iyv_A Shikimate kinase, SK; t 92.8 0.054 1.8E-06 52.3 3.3 25 174-198 3-27 (184)
331 2yhs_A FTSY, cell division pro 92.8 0.76 2.6E-05 51.0 12.7 28 172-199 292-319 (503)
332 2f1r_A Molybdopterin-guanine d 92.8 0.066 2.2E-06 50.8 3.7 36 174-209 3-38 (171)
333 2bbw_A Adenylate kinase 4, AK4 92.8 0.066 2.3E-06 54.5 4.1 27 172-198 26-52 (246)
334 2jaq_A Deoxyguanosine kinase; 92.8 0.063 2.2E-06 52.7 3.8 24 175-198 2-25 (205)
335 2c95_A Adenylate kinase 1; tra 92.8 0.069 2.4E-06 52.0 4.0 27 172-198 8-34 (196)
336 1lvg_A Guanylate kinase, GMP k 92.8 0.058 2E-06 52.8 3.4 26 173-198 4-29 (198)
337 4gp7_A Metallophosphoesterase; 92.8 0.046 1.6E-06 52.1 2.6 22 172-193 8-29 (171)
338 1ex7_A Guanylate kinase; subst 92.8 0.058 2E-06 51.9 3.2 24 174-197 2-25 (186)
339 3ney_A 55 kDa erythrocyte memb 92.7 0.067 2.3E-06 51.9 3.7 27 172-198 18-44 (197)
340 1cke_A CK, MSSA, protein (cyti 92.7 0.067 2.3E-06 53.6 3.8 25 174-198 6-30 (227)
341 2j41_A Guanylate kinase; GMP, 92.6 0.072 2.4E-06 52.5 3.9 25 173-197 6-30 (207)
342 1nn5_A Similar to deoxythymidy 92.6 0.19 6.4E-06 49.7 7.0 32 173-205 9-40 (215)
343 2q6t_A DNAB replication FORK h 92.6 0.4 1.4E-05 53.5 10.4 51 173-226 200-250 (444)
344 1tev_A UMP-CMP kinase; ploop, 92.6 0.074 2.5E-06 51.8 3.9 26 173-198 3-28 (196)
345 1e6c_A Shikimate kinase; phosp 92.6 0.065 2.2E-06 51.0 3.4 25 174-198 3-27 (173)
346 2zts_A Putative uncharacterize 92.6 0.37 1.3E-05 48.8 9.4 49 173-224 30-78 (251)
347 1uf9_A TT1252 protein; P-loop, 92.6 0.071 2.4E-06 52.3 3.7 26 171-196 6-31 (203)
348 1ukz_A Uridylate kinase; trans 92.5 0.081 2.8E-06 52.0 4.1 26 172-197 14-39 (203)
349 2if2_A Dephospho-COA kinase; a 92.5 0.065 2.2E-06 52.7 3.4 22 174-195 2-23 (204)
350 2bwj_A Adenylate kinase 5; pho 92.5 0.073 2.5E-06 52.0 3.7 26 173-198 12-37 (199)
351 1rj9_A FTSY, signal recognitio 92.4 0.096 3.3E-06 55.0 4.7 28 172-199 101-128 (304)
352 2r6a_A DNAB helicase, replicat 92.4 0.43 1.5E-05 53.4 10.4 51 172-225 202-252 (454)
353 3umf_A Adenylate kinase; rossm 92.4 0.087 3E-06 52.1 4.1 28 171-198 27-54 (217)
354 3cm0_A Adenylate kinase; ATP-b 92.4 0.08 2.7E-06 51.1 3.8 25 174-198 5-29 (186)
355 1htw_A HI0065; nucleotide-bind 92.3 0.079 2.7E-06 49.5 3.5 27 171-197 31-57 (158)
356 1g41_A Heat shock protein HSLU 92.3 0.096 3.3E-06 57.7 4.7 47 152-198 15-75 (444)
357 3cmu_A Protein RECA, recombina 92.3 0.36 1.2E-05 62.7 10.5 87 172-265 382-473 (2050)
358 1znw_A Guanylate kinase, GMP k 92.3 0.076 2.6E-06 52.4 3.5 26 172-197 19-44 (207)
359 2plr_A DTMP kinase, probable t 92.2 0.09 3.1E-06 52.0 4.0 26 174-199 5-30 (213)
360 3cmw_A Protein RECA, recombina 92.2 0.36 1.2E-05 61.9 10.2 87 172-265 382-473 (1706)
361 2cdn_A Adenylate kinase; phosp 92.2 0.099 3.4E-06 51.2 4.3 26 173-198 20-45 (201)
362 2pt5_A Shikimate kinase, SK; a 92.1 0.09 3.1E-06 49.7 3.8 24 175-198 2-25 (168)
363 1qf9_A UMP/CMP kinase, protein 92.1 0.099 3.4E-06 50.7 4.2 26 173-198 6-31 (194)
364 3a4m_A L-seryl-tRNA(SEC) kinas 92.1 0.087 3E-06 54.1 3.9 26 173-198 4-29 (260)
365 2qt1_A Nicotinamide riboside k 92.1 0.083 2.8E-06 52.1 3.6 25 172-196 20-44 (207)
366 1z6g_A Guanylate kinase; struc 92.1 0.071 2.4E-06 53.1 3.1 26 172-197 22-47 (218)
367 1np6_A Molybdopterin-guanine d 92.0 0.18 6.3E-06 47.8 5.8 28 172-199 5-32 (174)
368 1tue_A Replication protein E1; 92.0 0.14 4.7E-06 49.6 4.7 38 161-198 45-83 (212)
369 3k1j_A LON protease, ATP-depen 92.0 0.097 3.3E-06 61.1 4.5 48 149-198 38-85 (604)
370 3tlx_A Adenylate kinase 2; str 92.0 0.17 5.7E-06 51.3 5.8 28 171-198 27-54 (243)
371 2z0h_A DTMP kinase, thymidylat 92.0 0.26 8.8E-06 47.9 7.0 25 175-199 2-26 (197)
372 3aez_A Pantothenate kinase; tr 92.0 0.1 3.5E-06 55.0 4.3 29 171-199 88-116 (312)
373 3tqc_A Pantothenate kinase; bi 92.0 0.11 3.7E-06 54.8 4.4 43 156-198 71-117 (321)
374 2vli_A Antibiotic resistance p 92.0 0.071 2.4E-06 51.3 2.8 26 173-198 5-30 (183)
375 2i3b_A HCR-ntpase, human cance 92.0 0.091 3.1E-06 50.8 3.6 25 174-198 2-26 (189)
376 2p5t_B PEZT; postsegregational 91.9 0.12 4.1E-06 52.8 4.6 27 172-198 31-57 (253)
377 4e22_A Cytidylate kinase; P-lo 91.9 0.095 3.2E-06 53.5 3.8 27 172-198 26-52 (252)
378 1aky_A Adenylate kinase; ATP:A 91.9 0.1 3.6E-06 51.9 4.1 26 173-198 4-29 (220)
379 1jjv_A Dephospho-COA kinase; P 91.8 0.086 2.9E-06 51.9 3.3 22 174-195 3-24 (206)
380 2wwf_A Thymidilate kinase, put 91.8 0.11 3.7E-06 51.4 4.0 32 173-205 10-41 (212)
381 1gtv_A TMK, thymidylate kinase 91.8 0.063 2.1E-06 53.3 2.2 25 175-199 2-26 (214)
382 3l0o_A Transcription terminati 91.8 0.1 3.4E-06 55.6 3.8 52 162-214 163-216 (427)
383 2pbr_A DTMP kinase, thymidylat 91.7 0.11 3.6E-06 50.6 3.8 25 175-199 2-26 (195)
384 2grj_A Dephospho-COA kinase; T 91.7 0.1 3.6E-06 50.6 3.6 26 172-197 11-36 (192)
385 2jeo_A Uridine-cytidine kinase 91.7 0.1 3.6E-06 53.0 3.9 28 171-198 23-50 (245)
386 1uj2_A Uridine-cytidine kinase 91.7 0.1 3.4E-06 53.4 3.7 28 171-198 20-47 (252)
387 3b9q_A Chloroplast SRP recepto 91.6 0.13 4.4E-06 54.0 4.5 28 172-199 99-126 (302)
388 1zak_A Adenylate kinase; ATP:A 91.5 0.11 3.7E-06 51.9 3.7 26 173-198 5-30 (222)
389 3bgw_A DNAB-like replicative h 91.5 0.61 2.1E-05 51.8 10.1 51 172-226 196-246 (444)
390 1s96_A Guanylate kinase, GMP k 91.4 0.11 3.9E-06 51.5 3.7 27 172-198 15-41 (219)
391 3cmw_A Protein RECA, recombina 91.4 0.43 1.5E-05 61.2 9.7 85 172-263 1430-1519(1706)
392 1zd8_A GTP:AMP phosphotransfer 91.4 0.11 3.8E-06 52.1 3.6 25 173-197 7-31 (227)
393 3fb4_A Adenylate kinase; psych 91.4 0.12 4.1E-06 51.3 3.8 24 175-198 2-25 (216)
394 3nwj_A ATSK2; P loop, shikimat 91.2 0.11 3.8E-06 52.7 3.4 26 173-198 48-73 (250)
395 1m7g_A Adenylylsulfate kinase; 91.2 0.14 4.9E-06 50.5 4.2 28 171-198 23-50 (211)
396 3end_A Light-independent proto 91.1 0.15 5.2E-06 53.8 4.6 42 170-213 38-79 (307)
397 2onk_A Molybdate/tungstate ABC 91.1 0.12 4.2E-06 52.1 3.6 25 171-196 23-47 (240)
398 3hjn_A DTMP kinase, thymidylat 91.0 0.45 1.6E-05 46.2 7.5 50 175-226 2-51 (197)
399 3p32_A Probable GTPase RV1496/ 91.0 0.33 1.1E-05 52.3 7.2 39 161-199 65-105 (355)
400 3vr4_D V-type sodium ATPase su 91.0 0.29 1E-05 53.4 6.5 89 174-264 152-259 (465)
401 3r20_A Cytidylate kinase; stru 91.0 0.14 4.8E-06 51.2 3.8 26 173-198 9-34 (233)
402 2pez_A Bifunctional 3'-phospho 90.9 0.16 5.4E-06 48.6 4.0 27 173-199 5-31 (179)
403 1q57_A DNA primase/helicase; d 90.8 0.89 3.1E-05 51.6 10.9 53 172-227 241-293 (503)
404 3dl0_A Adenylate kinase; phosp 90.8 0.14 4.7E-06 50.8 3.6 23 175-197 2-24 (216)
405 2v54_A DTMP kinase, thymidylat 90.8 0.15 5.2E-06 49.9 3.9 25 173-197 4-28 (204)
406 3d3q_A TRNA delta(2)-isopenten 90.7 0.14 4.7E-06 54.1 3.7 25 174-198 8-32 (340)
407 2og2_A Putative signal recogni 90.7 0.17 5.9E-06 54.2 4.5 28 172-199 156-183 (359)
408 1g5t_A COB(I)alamin adenosyltr 90.7 0.15 5E-06 49.1 3.5 118 174-300 29-165 (196)
409 1zu4_A FTSY; GTPase, signal re 90.7 0.19 6.4E-06 53.2 4.6 38 172-211 104-141 (320)
410 4eaq_A DTMP kinase, thymidylat 90.6 0.3 1E-05 48.8 5.9 28 172-199 25-52 (229)
411 3b85_A Phosphate starvation-in 90.5 0.11 3.9E-06 51.0 2.7 24 173-196 22-45 (208)
412 3lnc_A Guanylate kinase, GMP k 90.5 0.096 3.3E-06 52.7 2.1 25 173-197 27-52 (231)
413 1vht_A Dephospho-COA kinase; s 90.4 0.17 5.7E-06 50.3 3.9 23 173-195 4-26 (218)
414 3ake_A Cytidylate kinase; CMP 90.4 0.17 5.7E-06 49.8 3.8 24 175-198 4-27 (208)
415 3tif_A Uncharacterized ABC tra 90.4 0.12 4.2E-06 51.9 2.8 35 172-209 30-64 (235)
416 2pcj_A ABC transporter, lipopr 90.3 0.12 4.1E-06 51.6 2.7 25 172-196 29-53 (224)
417 3lv8_A DTMP kinase, thymidylat 90.3 0.44 1.5E-05 47.7 6.7 36 173-209 27-62 (236)
418 3crm_A TRNA delta(2)-isopenten 90.2 0.16 5.5E-06 53.3 3.6 24 174-197 6-29 (323)
419 2f6r_A COA synthase, bifunctio 90.2 0.16 5.3E-06 52.8 3.5 23 172-194 74-96 (281)
420 1yrb_A ATP(GTP)binding protein 90.2 0.24 8.3E-06 50.7 5.0 27 172-198 13-39 (262)
421 3sr0_A Adenylate kinase; phosp 90.1 0.19 6.4E-06 49.3 3.8 24 175-198 2-25 (206)
422 1a7j_A Phosphoribulokinase; tr 90.1 0.12 4.2E-06 53.9 2.6 27 172-198 4-30 (290)
423 1ak2_A Adenylate kinase isoenz 90.1 0.21 7E-06 50.3 4.2 26 173-198 16-41 (233)
424 2r8r_A Sensor protein; KDPD, P 90.0 0.26 8.9E-06 48.5 4.7 36 175-212 8-43 (228)
425 3be4_A Adenylate kinase; malar 90.0 0.16 5.6E-06 50.4 3.4 25 174-198 6-30 (217)
426 1sq5_A Pantothenate kinase; P- 90.0 0.17 5.9E-06 53.3 3.7 28 171-198 78-105 (308)
427 4tmk_A Protein (thymidylate ki 90.0 0.51 1.7E-05 46.4 6.9 52 174-226 4-55 (213)
428 2xb4_A Adenylate kinase; ATP-b 90.0 0.19 6.4E-06 50.2 3.8 24 175-198 2-25 (223)
429 3foz_A TRNA delta(2)-isopenten 90.0 0.21 7.1E-06 51.8 4.1 26 172-197 9-34 (316)
430 1e4v_A Adenylate kinase; trans 89.9 0.18 6.2E-06 49.9 3.7 23 175-197 2-24 (214)
431 3exa_A TRNA delta(2)-isopenten 89.9 0.18 6.3E-06 52.3 3.7 25 173-197 3-27 (322)
432 2cbz_A Multidrug resistance-as 89.9 0.14 4.8E-06 51.6 2.8 26 172-197 30-55 (237)
433 2d2e_A SUFC protein; ABC-ATPas 89.8 0.17 5.9E-06 51.4 3.3 25 172-196 28-52 (250)
434 3gfo_A Cobalt import ATP-bindi 89.7 0.15 5E-06 52.6 2.8 26 172-197 33-58 (275)
435 1b0u_A Histidine permease; ABC 89.7 0.15 5.1E-06 52.3 2.8 35 172-209 31-65 (262)
436 1sgw_A Putative ABC transporte 89.6 0.14 4.6E-06 50.7 2.4 25 172-196 34-58 (214)
437 1ji0_A ABC transporter; ATP bi 89.6 0.16 5.4E-06 51.4 2.8 35 172-209 31-65 (240)
438 1oix_A RAS-related protein RAB 89.5 0.19 6.4E-06 48.7 3.3 24 174-197 30-53 (191)
439 3a8t_A Adenylate isopentenyltr 89.5 0.17 5.6E-06 53.4 3.0 25 173-197 40-64 (339)
440 2pze_A Cystic fibrosis transme 89.5 0.16 5.4E-06 50.9 2.8 26 172-197 33-58 (229)
441 2c61_A A-type ATP synthase non 89.5 0.27 9.2E-06 54.1 4.8 101 164-264 142-260 (469)
442 2zu0_C Probable ATP-dependent 89.5 0.18 6.3E-06 51.8 3.3 25 172-196 45-69 (267)
443 4g1u_C Hemin import ATP-bindin 89.5 0.16 5.4E-06 52.2 2.8 26 172-197 36-61 (266)
444 1cr0_A DNA primase/helicase; R 89.5 0.34 1.2E-05 50.7 5.5 52 171-225 33-84 (296)
445 2olj_A Amino acid ABC transpor 89.5 0.16 5.4E-06 52.0 2.8 26 172-197 49-74 (263)
446 1g6h_A High-affinity branched- 89.4 0.16 5.6E-06 51.8 2.8 26 172-197 32-57 (257)
447 3ld9_A DTMP kinase, thymidylat 89.3 0.46 1.6E-05 47.0 6.0 30 170-199 18-47 (223)
448 2ff7_A Alpha-hemolysin translo 89.2 0.17 5.8E-06 51.3 2.8 35 172-209 34-68 (247)
449 1cp2_A CP2, nitrogenase iron p 89.2 0.25 8.4E-06 50.9 4.1 37 174-212 2-38 (269)
450 2eyu_A Twitching motility prot 89.1 0.35 1.2E-05 49.4 5.2 29 171-199 23-51 (261)
451 2v9p_A Replication protein E1; 89.1 0.24 8.1E-06 51.7 3.8 27 171-197 124-150 (305)
452 1mv5_A LMRA, multidrug resista 89.1 0.17 6E-06 51.2 2.8 26 172-197 27-52 (243)
453 1vpl_A ABC transporter, ATP-bi 89.1 0.18 6.1E-06 51.4 2.8 26 172-197 40-65 (256)
454 2ghi_A Transport protein; mult 88.9 0.18 6.3E-06 51.5 2.8 26 172-197 45-70 (260)
455 3vkg_A Dynein heavy chain, cyt 88.9 1.9 6.4E-05 58.9 12.9 61 163-228 1295-1355(3245)
456 3upu_A ATP-dependent DNA helic 88.9 0.51 1.7E-05 52.9 6.7 44 157-201 30-73 (459)
457 3gqb_B V-type ATP synthase bet 88.9 0.68 2.3E-05 50.6 7.3 91 174-264 148-262 (464)
458 2qi9_C Vitamin B12 import ATP- 88.9 0.19 6.4E-06 51.0 2.8 26 172-197 25-50 (249)
459 2v3c_C SRP54, signal recogniti 88.8 0.18 6.2E-06 55.6 2.9 29 172-200 98-126 (432)
460 2ixe_A Antigen peptide transpo 88.8 0.19 6.4E-06 51.8 2.8 36 171-209 43-78 (271)
461 2f9l_A RAB11B, member RAS onco 88.7 0.24 8.3E-06 48.2 3.5 23 174-196 6-28 (199)
462 3mfy_A V-type ATP synthase alp 88.7 0.33 1.1E-05 54.1 4.7 98 163-264 216-335 (588)
463 2dyk_A GTP-binding protein; GT 88.6 0.26 9E-06 45.8 3.5 23 174-196 2-24 (161)
464 2nq2_C Hypothetical ABC transp 88.6 0.2 6.8E-06 51.0 2.8 26 172-197 30-55 (253)
465 2afh_E Nitrogenase iron protei 88.6 0.31 1.1E-05 50.8 4.4 38 173-212 2-39 (289)
466 2yz2_A Putative ABC transporte 88.6 0.2 6.8E-06 51.5 2.8 25 172-196 32-56 (266)
467 1nlf_A Regulatory protein REPA 88.5 0.22 7.6E-06 51.7 3.2 27 172-198 29-55 (279)
468 2ihy_A ABC transporter, ATP-bi 88.5 0.2 6.8E-06 51.8 2.8 35 172-209 46-80 (279)
469 1svm_A Large T antigen; AAA+ f 88.5 0.43 1.5E-05 51.5 5.5 27 171-197 167-193 (377)
470 2wji_A Ferrous iron transport 88.4 0.25 8.7E-06 46.4 3.3 22 174-195 4-25 (165)
471 2ck3_A ATP synthase subunit al 88.4 1.5 5.1E-05 48.6 9.7 101 164-264 152-273 (510)
472 1q3t_A Cytidylate kinase; nucl 88.3 0.32 1.1E-05 48.9 4.2 27 172-198 15-41 (236)
473 2ged_A SR-beta, signal recogni 88.3 0.49 1.7E-05 45.6 5.4 25 172-196 47-71 (193)
474 1ltq_A Polynucleotide kinase; 88.1 0.26 8.9E-06 51.8 3.5 23 174-196 3-25 (301)
475 3sop_A Neuronal-specific septi 88.1 0.26 8.9E-06 50.7 3.3 24 175-198 4-27 (270)
476 3eph_A TRNA isopentenyltransfe 88.1 0.28 9.7E-06 52.9 3.7 25 174-198 3-27 (409)
477 3vr4_A V-type sodium ATPase ca 88.1 1.2 4E-05 50.0 8.6 97 163-263 221-339 (600)
478 2zej_A Dardarin, leucine-rich 88.0 0.24 8.3E-06 47.5 2.9 21 175-195 4-24 (184)
479 4edh_A DTMP kinase, thymidylat 87.9 0.86 2.9E-05 44.8 6.9 33 173-206 6-38 (213)
480 2qmh_A HPR kinase/phosphorylas 87.9 0.21 7.3E-06 47.9 2.3 23 174-196 35-57 (205)
481 1g8f_A Sulfate adenylyltransfe 87.7 0.56 1.9E-05 52.6 6.0 46 154-199 374-421 (511)
482 2orw_A Thymidine kinase; TMTK, 87.7 0.41 1.4E-05 46.0 4.2 27 174-200 4-30 (184)
483 3iqw_A Tail-anchored protein t 87.6 0.69 2.4E-05 49.1 6.3 46 170-217 13-58 (334)
484 3io3_A DEHA2D07832P; chaperone 87.6 0.75 2.6E-05 49.1 6.6 45 170-216 15-61 (348)
485 2ce2_X GTPase HRAS; signaling 87.5 0.29 1E-05 45.6 3.1 22 175-196 5-26 (166)
486 2pjz_A Hypothetical protein ST 87.5 0.26 8.8E-06 50.4 2.8 24 173-196 30-53 (263)
487 3zvl_A Bifunctional polynucleo 87.4 0.24 8.2E-06 54.7 2.7 28 170-197 255-282 (416)
488 4gzl_A RAS-related C3 botulinu 87.3 0.33 1.1E-05 47.5 3.4 36 161-196 18-53 (204)
489 1z2a_A RAS-related protein RAB 87.3 0.32 1.1E-05 45.5 3.2 22 175-196 7-28 (168)
490 3cwq_A Para family chromosome 87.2 0.8 2.7E-05 44.9 6.2 41 175-218 2-43 (209)
491 3nh6_A ATP-binding cassette SU 87.2 0.24 8.3E-06 51.8 2.5 27 171-197 78-104 (306)
492 3con_A GTPase NRAS; structural 87.1 0.33 1.1E-05 46.7 3.2 22 175-196 23-44 (190)
493 2qe7_A ATP synthase subunit al 87.0 1.8 6.1E-05 47.9 9.2 97 164-264 152-265 (502)
494 3kjh_A CO dehydrogenase/acetyl 87.0 0.64 2.2E-05 47.1 5.5 42 176-219 3-44 (254)
495 2ocp_A DGK, deoxyguanosine kin 86.9 0.38 1.3E-05 48.6 3.7 26 173-198 2-27 (241)
496 3cr8_A Sulfate adenylyltranfer 86.9 0.59 2E-05 53.2 5.6 45 155-199 349-395 (552)
497 3fvq_A Fe(3+) IONS import ATP- 86.8 0.32 1.1E-05 52.0 3.2 26 172-197 29-54 (359)
498 3f9v_A Minichromosome maintena 86.8 0.2 6.8E-06 58.0 1.7 45 153-197 296-351 (595)
499 2wjg_A FEOB, ferrous iron tran 86.8 0.35 1.2E-05 46.4 3.3 23 174-196 8-30 (188)
500 3kta_A Chromosome segregation 86.8 0.34 1.2E-05 46.4 3.1 24 174-197 27-50 (182)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.3e-45 Score=429.80 Aligned_cols=309 Identities=15% Similarity=0.137 Sum_probs=242.2
Q ss_pred CCchHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHH--HHhhcCCCCEEEEEEecCCC--CHHHHHHHHHHH
Q 002133 155 PSRNPVFQKMMESLRDS---NVNMIGLYGMGGVGKTTLVKVVAR--QVVKEDLFDVVVDAEVTHTP--DWKEICGRIADQ 227 (961)
Q Consensus 155 ~gr~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 227 (961)
+||++++++|.++|... ..++|+|+||||+||||||+++|+ +.+.+.+|+.++||++++.+ +...+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999743 689999999999999999999998 46667899999999999985 789999999999
Q ss_pred hCCCcc-------CCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecchhh
Q 002133 228 LGLEIV-------RPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV 300 (961)
Q Consensus 228 l~~~~~-------~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v 300 (961)
++.... ...+.......+++.+..+|||||||||||+..++ .+ + ..+||+||||||++.+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~--------~~~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A--------QELRLRCLVTTRDVEI 277 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H--------HHTTCEEEEEESBGGG
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c--------ccCCCEEEEEcCCHHH
Confidence 986532 11134556788888887534999999999998765 11 1 2379999999999999
Q ss_pred hhhcCC-CCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHhccCChHHHHHHHHHHH
Q 002133 301 LRINMS-NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAINWLR 379 (961)
Q Consensus 301 ~~~~~~-~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~~l~ 379 (961)
+.. ++ ....|++++|+.++||+||.++++....+++..+++++|+++|+|+||||+++|+.++.++ |+.+ +.+.
T Consensus 278 ~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~ 352 (549)
T 2a5y_B 278 SNA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLN 352 (549)
T ss_dssp GGG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHH
T ss_pred HHH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhH
Confidence 754 33 4467999999999999999999886554577888999999999999999999999998764 4333 3332
Q ss_pred hcCCCcccccccccchhHhhhhcCcHhHHHHHH-----------HhcCCCCCCCCChhhHHHHHHHh--Ccccccc---c
Q 002133 380 KSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQ-----------LCGLLNDGSRLPIDDLIRYVFAL--DNLFTGI---D 443 (961)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~w~a~--g~~~~~~---~ 443 (961)
.... .. ......+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ | |+... .
T Consensus 353 ~~l~-~~-~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G-~i~~~~~~~ 425 (549)
T 2a5y_B 353 NKLE-SR-GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPV-DICSNEEEQ 425 (549)
T ss_dssp HHHH-HH-CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC--------CC
T ss_pred HHhh-cc-cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccc-eeccCCCCC
Confidence 2210 00 1122388999999999999999999 999999999998 8899999 8 88542 2
Q ss_pred hHHHHHHHHHHHHHHhhcccccccC--CCCCeEeehHHHHHHHHHHhccCc
Q 002133 444 TLEVARNRVYTLMDHLKGPCLLLNG--DTEDHVKMHQIIHALAVLIASDKL 492 (961)
Q Consensus 444 ~~~~~~~~~~~~i~~L~~~~l~~~~--~~~~~~~mH~lv~~~~~~~~~~~~ 492 (961)
+.+++.+ ++++|++++|++.. +...+|+|||+||++|+.++.+++
T Consensus 426 ~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 426 LDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CHHHHHH----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 2333332 58889999999864 245689999999999999887543
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.1e-37 Score=360.64 Aligned_cols=283 Identities=20% Similarity=0.206 Sum_probs=221.6
Q ss_pred cCCchHHHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCE-EEEEEecCCCCHHHHHHHHHHHhCCC
Q 002133 154 FPSRNPVFQKMMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV-VVDAEVTHTPDWKEICGRIADQLGLE 231 (961)
Q Consensus 154 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~ 231 (961)
.+||++++++|.++|.. +..++|+|+||||+||||||+++|++.+.+.+|+. ++|+++++.++...++..+++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999975 56899999999999999999999998766677986 99999999999888888887754211
Q ss_pred ---ccCC----C----CHHHHHHHHHHHHH--cCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecch
Q 002133 232 ---IVRP----D----SLVEKANQLRQALK--KKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ 298 (961)
Q Consensus 232 ---~~~~----~----~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~ 298 (961)
.... . +.......+.+.++ .+||+||||||||+.+.|+.+ .+||+||||||++
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f--------------~pGSRILVTTRd~ 275 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--------------NLSCKILLTTRFK 275 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH--------------HSSCCEEEECSCS
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh--------------CCCeEEEEeccCh
Confidence 0100 0 12334556666652 358999999999998888754 1589999999999
Q ss_pred hhhhhcCCCCceEEcc------CCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHhccC--ChHH
Q 002133 299 HVLRINMSNPRIFSIS------TLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQ--STHV 370 (961)
Q Consensus 299 ~v~~~~~~~~~~~~l~------~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~--~~~~ 370 (961)
.++.. +.....|.++ +|+.+|||+||.+..+.. ..++..+| |+|+||||+++|+.|+++ +.+.
T Consensus 276 ~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 98732 2222356666 899999999999986432 12233444 999999999999999976 6778
Q ss_pred HHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhH-HHHHHHhcCCCCCCCCChhhHHHHHHHhCccccccchHHHHH
Q 002133 371 WKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEA-QFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEVAR 449 (961)
Q Consensus 371 w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 449 (961)
|+.. .......++.+||+.||+++ |+||+|||+||+++.|+.+.++.+|+++| .++
T Consensus 347 W~~~-------------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG--------eed-- 403 (1221)
T 1vt4_I 347 WKHV-------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI--------KSD-- 403 (1221)
T ss_dssp HHHC-------------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC--------SHH--
T ss_pred HhcC-------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC--------HHH--
Confidence 8652 11122889999999999999 99999999999999999999999999987 122
Q ss_pred HHHHHHHHHhhcccccccCCCCCeEeehHHHHHHH
Q 002133 450 NRVYTLMDHLKGPCLLLNGDTEDHVKMHQIIHALA 484 (961)
Q Consensus 450 ~~~~~~i~~L~~~~l~~~~~~~~~~~mH~lv~~~~ 484 (961)
..+++++|+++||++..+...+|+|||++++++
T Consensus 404 --Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 --VMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp --HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred --HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 334678888899998765678999999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.7e-36 Score=391.80 Aligned_cols=313 Identities=19% Similarity=0.281 Sum_probs=247.3
Q ss_pred CCccccCCchHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhh-cC-CCCEEEEEEecCCCC--HHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVK-ED-LFDVVVDAEVTHTPD--WKEICG 222 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~~~ 222 (961)
.....|+||++++++|.++|. +.+.++|+|+||||+||||||+++|++.+. .. +|+.++|+++++..+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 445679999999999999995 467899999999999999999999988643 23 557888999998643 344566
Q ss_pred HHHHHhCCCcc----CCCCHHHHHHHHHHHHHc-CCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecc
Q 002133 223 RIADQLGLEIV----RPDSLVEKANQLRQALKK-KKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (961)
Q Consensus 223 ~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~ 297 (961)
.++..++.... ...........++..+.. ++||||||||||+..+|..+ .+||+||||||+
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------------~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------------DNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------------CSSCEEEEEESS
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------------cCCCEEEEEcCC
Confidence 77777764432 123556667777777753 24999999999998877654 458899999999
Q ss_pred hhhhhhcCCCCceEEccC-CCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHhccCChHHHHHHHH
Q 002133 298 QHVLRINMSNPRIFSIST-LADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDAIN 376 (961)
Q Consensus 298 ~~v~~~~~~~~~~~~l~~-L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~~~ 376 (961)
+.++...+.....+.+.+ |++++|++||...++.. .++..+.+++|+++|+|+||||+++|++|+.++ ..|.++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~ 343 (1249)
T 3sfz_A 267 KSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLR 343 (1249)
T ss_dssp TTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHH
T ss_pred HHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHH
Confidence 998744456667899996 99999999999988543 234456789999999999999999999999775 57999999
Q ss_pred HHHhcCCCccccc-----ccccchhHhhhhcCcHhHHHHHHHhcCCCCCCCCChhhHHHHHHHhCccccccchHHHHHHH
Q 002133 377 WLRKSNPRKIKGM-----DADLSSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEVARNR 451 (961)
Q Consensus 377 ~l~~~~~~~~~~~-----~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~ 451 (961)
.+.......+... +....++.+||+.||+++|.||+|||+||+++.|+++.++.+|.+++ +++
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~---------~~~--- 411 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET---------EEV--- 411 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH---------HHH---
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH---------HHH---
Confidence 9987654333221 12278999999999999999999999999999999999999997765 233
Q ss_pred HHHHHHHhhcccccccC--CCCCeEeehHHHHHHHHHHhccC
Q 002133 452 VYTLMDHLKGPCLLLNG--DTEDHVKMHQIIHALAVLIASDK 491 (961)
Q Consensus 452 ~~~~i~~L~~~~l~~~~--~~~~~~~mH~lv~~~~~~~~~~~ 491 (961)
.++++.|++++|++.. +...+|+||+++|++++..+.++
T Consensus 412 -~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 412 -EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 3457778888999754 23346999999999999887643
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.6e-33 Score=331.44 Aligned_cols=306 Identities=20% Similarity=0.294 Sum_probs=232.4
Q ss_pred CccccCCchHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhh-cCCC-CEEEEEEecCCCCHHHHHHHH-
Q 002133 150 GYVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVK-EDLF-DVVVDAEVTHTPDWKEICGRI- 224 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~i- 224 (961)
....|+||+.++++|.++|. ....++|+|+||||+||||||++++++... +.+| +.++|++++.. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 34679999999999999997 356789999999999999999999987644 4568 58999999876 333444433
Q ss_pred --HHHhCCC----ccCCCCHHHHHHHHHHHHHcC-CcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecc
Q 002133 225 --ADQLGLE----IVRPDSLVEKANQLRQALKKK-KRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (961)
Q Consensus 225 --~~~l~~~----~~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~ 297 (961)
...++.. .....+.......+...+... +++||||||||+...+..+ .+|++||||||+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------------~~~~~ilvTsR~ 266 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------------DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------------CSSCEEEEEESC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------------cCCCeEEEECCC
Confidence 4455421 112235566777788777653 6899999999987655432 357899999999
Q ss_pred hhhhhhcCCCCceEEc---cCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHhccCChHHHHHH
Q 002133 298 QHVLRINMSNPRIFSI---STLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANALKGQSTHVWKDA 374 (961)
Q Consensus 298 ~~v~~~~~~~~~~~~l---~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~ 374 (961)
..++.. +. ...+++ ++|+.+++++||...++.. .....+.+.+|+++|+|+||||.++|++++... ..|..+
T Consensus 267 ~~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~ 341 (591)
T 1z6t_A 267 KSVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYY 341 (591)
T ss_dssp GGGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHH
T ss_pred cHHHHh-cC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHH
Confidence 988633 22 334554 5899999999999998742 223345789999999999999999999998663 479999
Q ss_pred HHHHHhcCCCccccc----ccc-cchhHhhhhcCcHhHHHHHHHhcCCCCCCCCChhhHHHHHHHhCccccccchHHHHH
Q 002133 375 INWLRKSNPRKIKGM----DAD-LSSIELSYKVLEPEAQFLFQLCGLLNDGSRLPIDDLIRYVFALDNLFTGIDTLEVAR 449 (961)
Q Consensus 375 ~~~l~~~~~~~~~~~----~~~-~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 449 (961)
++.+.......+... ... ..++..||+.||++.|.||++||+||+++.|+.+.+...|.+++ ++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~---------~~-- 410 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET---------EE-- 410 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH---------HH--
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCH---------HH--
Confidence 998876543222211 112 78899999999999999999999999999999999999997654 22
Q ss_pred HHHHHHHHHhhcccccccC--CCCCeEeehHHHHHHHHHHh
Q 002133 450 NRVYTLMDHLKGPCLLLNG--DTEDHVKMHQIIHALAVLIA 488 (961)
Q Consensus 450 ~~~~~~i~~L~~~~l~~~~--~~~~~~~mH~lv~~~~~~~~ 488 (961)
..+.++.|++++|++.. +....|+||+++|++++...
T Consensus 411 --~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 411 --VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp --HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred --HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 34457778888998643 34458999999999998873
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.7e-27 Score=285.09 Aligned_cols=155 Identities=25% Similarity=0.295 Sum_probs=127.1
Q ss_pred hhcCCCcEEecCCCCCCCCCC-cc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCC
Q 002133 509 AARKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLR 585 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~ 585 (961)
..+.++++|++++|.+..++. .+ ++++|++|++++|.+.+ +++..|.++++|++|+|++|.+..+ |..|+++++|+
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 356889999999999988776 33 89999999999999874 4445568999999999999999977 88899999999
Q ss_pred EEEccCCCCCC--CccccCCCCCcEEEeccCcCC--ccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCC----EE
Q 002133 586 TLSFDCCHLED--VARVGDLAKLEILSFRNSHIE--QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLN----EL 657 (961)
Q Consensus 586 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~----~L 657 (961)
+|++++|.++. +..++++++|++|++++|.++ .+|..++++++|++|++++ +.++.+++..++.+++|+ +|
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY-NYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS-SCCCEECTTTTHHHHHCTTCCCEE
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC-CcceecChhhhhhhhcccccccee
Confidence 99999999988 367999999999999999988 5789999999999999999 466666655455554443 45
Q ss_pred EccCCCCc
Q 002133 658 YMGNSFTR 665 (961)
Q Consensus 658 ~l~~~~~~ 665 (961)
++++|.+.
T Consensus 187 ~l~~n~l~ 194 (606)
T 3vq2_A 187 DMSLNPID 194 (606)
T ss_dssp ECTTCCCC
T ss_pred eccCCCcc
Confidence 55555433
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.8e-27 Score=288.55 Aligned_cols=333 Identities=13% Similarity=0.096 Sum_probs=216.3
Q ss_pred CChhhhhCCCceeEEEecCCCCCC------------------CCcccc--CCcCCCEEEccCCCCCC--CccccCCCCCc
Q 002133 550 IPNQFFDGMTELLVLHLTGIHFPS------------------LPLSLG--SLINLRTLSFDCCHLED--VARVGDLAKLE 607 (961)
Q Consensus 550 ~~~~~~~~l~~L~~L~L~~~~~~~------------------lp~~~~--~l~~L~~L~L~~~~l~~--~~~~~~l~~L~ 607 (961)
+|.. ++++++|++|+|++|.++. +|..++ ++++|++|+|++|++.+ |..++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 5554 4778888888888888887 888877 88888888888888666 67788888888
Q ss_pred EEEeccCc-CCc--cchhhhcCC-------CcCEEecCCCCCCcccCh-HHHhcCccCCEEEccCCCCccccCCCccchH
Q 002133 608 ILSFRNSH-IEQ--LPEQIGNLT-------RLKLLDLSNCSKLKVIKP-EVISRLSRLNELYMGNSFTRKVEGQSNASVV 676 (961)
Q Consensus 608 ~L~l~~~~-l~~--lp~~~~~l~-------~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 676 (961)
+|++++|. ++. +|..+++++ +|++|++++ +.+..+|. ..++++++|++|++++|.+..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-------- 589 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-------- 589 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--------
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcCCccCChhhhhcCCCCCEEECCCCCcccch--------
Confidence 88888887 774 787777665 888888888 45667776 24788888888888888766444
Q ss_pred hhcCCCCCCEEEcc------Ccchhccccc-cccccccceeEEEecccCCCCCCCc--cceEEecCCCcccc-h---HHH
Q 002133 677 ELKQLSSLTILDMH------IPDAQLLLED-LISLDLERYRIFIGDVWNWSGKYEC--SRTLKLKLDNSIYL-G---YGI 743 (961)
Q Consensus 677 ~l~~l~~L~~L~l~------~~~~~~~~~~-L~~l~L~~~~i~~~~~~~~~~~~~~--l~~l~L~~~~~~~~-~---~~~ 743 (961)
.+..+++|+.|+++ ++..+..+++ |+.++|++|.+. ..+.+...... ++.+.|+.+..... | ..+
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 46677788888876 4455666677 888888888764 34444333333 55555554433221 1 111
Q ss_pred HH-hhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCC------CccCCccceecccccccccc
Q 002133 744 KK-LLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEG------PVIFPLLQSLFLCNLILLEK 816 (961)
Q Consensus 744 ~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~------~~~~~~L~~L~l~~~~~L~~ 816 (961)
.. ..++|+.|+|++|... .+|..+ +..+++|+.|+|++|. +..++.... ...+++|+.|+++++ +++.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~--~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~ 742 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ-KFPTEL--FATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS 742 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC-SCCHHH--HHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCC
T ss_pred ccccCCCcCEEEccCCcCC-ccCHHH--HccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCcc
Confidence 10 1247888888877655 444433 1367788888888873 445543211 112347888888775 4554
Q ss_pred ccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCccccccccc
Q 002133 817 VCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNH 896 (961)
Q Consensus 817 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~ 896 (961)
++.... ...+++|+.|++++| .++.+|.. +..+++|+.|++++|+.+..- .+....|..+..+++
T Consensus 743 lp~~l~-----~~~l~~L~~L~Ls~N-~L~~lp~~--l~~L~~L~~L~Ls~N~~ls~N-------~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 743 LSDDFR-----ATTLPYLSNMDVSYN-CFSSFPTQ--PLNSSQLKAFGIRHQRDAEGN-------RILRQWPTGITTCPS 807 (876)
T ss_dssp CCGGGS-----TTTCTTCCEEECCSS-CCSSCCCG--GGGCTTCCEEECCCCBCTTCC-------BCCCCCCTTGGGCSS
T ss_pred chHHhh-----hccCCCcCEEEeCCC-CCCccchh--hhcCCCCCEEECCCCCCcccc-------cccccChHHHhcCCC
Confidence 432110 026788888888885 56666543 367888888888775421110 111222456677888
Q ss_pred ccceeccccccccccCCCC
Q 002133 897 LHSLALRRLPQLTSSGFYL 915 (961)
Q Consensus 897 L~~L~l~~c~~L~~i~~~~ 915 (961)
|++|+|++|. +..+|...
T Consensus 808 L~~L~Ls~N~-L~~Ip~~l 825 (876)
T 4ecn_A 808 LIQLQIGSND-IRKVDEKL 825 (876)
T ss_dssp CCEEECCSSC-CCBCCSCC
T ss_pred CCEEECCCCC-CCccCHhh
Confidence 8888888874 47777654
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.9e-27 Score=282.71 Aligned_cols=369 Identities=13% Similarity=0.114 Sum_probs=265.5
Q ss_pred CCCcEEecCCCCC-CCCCCcc-CCCceeEEEeccCCC-------------------------------------------
Q 002133 512 KNPTAISIPFRDI-SELPDSL-QCTRLKLFLLFTEDS------------------------------------------- 546 (961)
Q Consensus 512 ~~l~~L~l~~~~~-~~lp~~~-~~~~L~~L~l~~n~~------------------------------------------- 546 (961)
..++.|+++++.+ ..+|+.+ ++++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4788999999988 4677766 899999999988843
Q ss_pred -----------------------------------CCCCChhhhhCCCceeEEEecCCCCCC------------------
Q 002133 547 -----------------------------------SLQIPNQFFDGMTELLVLHLTGIHFPS------------------ 573 (961)
Q Consensus 547 -----------------------------------~~~~~~~~~~~l~~L~~L~L~~~~~~~------------------ 573 (961)
++ +|.. ++++++|++|+|++|.++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHH-HhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 23 6665 5889999999999999997
Q ss_pred CCcccc--CCcCCCEEEccCCCCCC--CccccCCCCCcEEEeccCc-CC--ccchhhhcC------CCcCEEecCCCCCC
Q 002133 574 LPLSLG--SLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSH-IE--QLPEQIGNL------TRLKLLDLSNCSKL 640 (961)
Q Consensus 574 lp~~~~--~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~-l~--~lp~~~~~l------~~L~~L~l~~~~~l 640 (961)
+|..++ ++++|++|+|++|.+.+ |..++++++|++|++++|. ++ .+|..++++ ++|++|++++ +.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcC
Confidence 999999 99999999999999777 6889999999999999997 88 489888887 9999999999 466
Q ss_pred cccCh-HHHhcCccCCEEEccCCCCc-cccCCCccchHhhcCCCCCCEEEcc------Ccchhccccc-cccccccceeE
Q 002133 641 KVIKP-EVISRLSRLNELYMGNSFTR-KVEGQSNASVVELKQLSSLTILDMH------IPDAQLLLED-LISLDLERYRI 711 (961)
Q Consensus 641 ~~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~l~~L~~L~l~------~~~~~~~~~~-L~~l~L~~~~i 711 (961)
+.+|. ..++++++|++|++++|.+. .++ .+..+++|+.|+++ ++..+..+++ |+.++|++|.+
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--------~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP--------AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECC--------CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchh--------hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC
Confidence 78887 24899999999999999766 444 46667788888886 4566777778 99999999887
Q ss_pred EEecccCCCCCCC--ccceEEecCCCccc-chHHHHH------hhccccEEEcccccCcccccccccCCCCccCCcEEEe
Q 002133 712 FIGDVWNWSGKYE--CSRTLKLKLDNSIY-LGYGIKK------LLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHV 782 (961)
Q Consensus 712 ~~~~~~~~~~~~~--~l~~l~L~~~~~~~-~~~~~~~------~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L 782 (961)
. ..+....... .++.+.++.+.... .|..+.. .+++|+.|++++|... .+|..+ +..+++|+.|++
T Consensus 390 ~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~l~~L~~L~L 464 (636)
T 4eco_A 390 K--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKEL--FSTGSPLSSINL 464 (636)
T ss_dssp S--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH--HHTTCCCSEEEC
T ss_pred c--ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHH--HccCCCCCEEEC
Confidence 5 4444443333 45556665543322 2222220 2358889999888665 444432 245788999999
Q ss_pred ecCCCcccccCCCCCc-------cCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHh
Q 002133 783 QNDPKILCIANSEGPV-------IFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAE 855 (961)
Q Consensus 783 ~~~~~l~~i~~~~~~~-------~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~ 855 (961)
++|. +..++.. ... .+++|+.|+++++ .++.++.... ...+++|++|++++| .++.+|.. +.
T Consensus 465 s~N~-l~~i~~~-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~-----~~~l~~L~~L~Ls~N-~l~~ip~~--~~ 533 (636)
T 4eco_A 465 MGNM-LTEIPKN-SLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFR-----ATTLPYLVGIDLSYN-SFSKFPTQ--PL 533 (636)
T ss_dssp CSSC-CSBCCSS-SSEETTEECTTGGGCCEEECCSS-CCCBCCGGGS-----TTTCTTCCEEECCSS-CCSSCCCG--GG
T ss_pred CCCC-CCCcCHH-HhccccccccccCCccEEECcCC-cCCccChhhh-----hccCCCcCEEECCCC-CCCCcChh--hh
Confidence 9885 4455543 111 1238899999884 4555432211 026889999999986 56667543 46
Q ss_pred hcccccEEeEeccccccccccccccCCccCCCcccccccccccceeccccccccccCCCC
Q 002133 856 KLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFYL 915 (961)
Q Consensus 856 ~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~i~~~~ 915 (961)
.+++|+.|++++|+.+..- .+....|..+..+++|++|+|++|. ++.+|...
T Consensus 534 ~l~~L~~L~Ls~N~~ls~N-------~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~ 585 (636)
T 4eco_A 534 NSSTLKGFGIRNQRDAQGN-------RTLREWPEGITLCPSLTQLQIGSND-IRKVNEKI 585 (636)
T ss_dssp GCSSCCEEECCSCBCTTCC-------BCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC
T ss_pred cCCCCCEEECCCCcccccC-------cccccChHHHhcCCCCCEEECCCCc-CCccCHhH
Confidence 7899999999765421110 1111224567788999999999885 48887654
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=2.8e-26 Score=274.56 Aligned_cols=296 Identities=17% Similarity=0.132 Sum_probs=196.5
Q ss_pred hhcCCCcEEecCCCCCCCCCC-cc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCC
Q 002133 509 AARKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLR 585 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~ 585 (961)
..+..+++|++++|.+..+++ .+ ++++|++|++++|.+.+..|. .|+++++|++|++++|.+..+ |..++++++|+
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChh-hccCccccCeeeCCCCcccccChhhhccccccc
Confidence 356789999999999988854 44 999999999999998854454 458999999999999999866 77899999999
Q ss_pred EEEccCCCCCC--CccccCCCCCcEEEeccCcCCccc-hhhhcCCCcCEEecCCCCCCcccChHHHhcCccCC--EEEcc
Q 002133 586 TLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLP-EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLN--ELYMG 660 (961)
Q Consensus 586 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~--~L~l~ 660 (961)
+|++++|.++. +..++++++|++|++++|.++.++ ..+..+++|++|++++ +.++.+++..++.+++|+ +|+++
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTCCSEEEECT
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcccceeEEecC
Confidence 99999999998 578999999999999999999763 3355599999999999 678888888899999999 89999
Q ss_pred CCCCccccCCCccc-----------------hHhhc--------------------------CCC--CCCEEEccC----
Q 002133 661 NSFTRKVEGQSNAS-----------------VVELK--------------------------QLS--SLTILDMHI---- 691 (961)
Q Consensus 661 ~~~~~~~~~~~~~~-----------------~~~l~--------------------------~l~--~L~~L~l~~---- 691 (961)
+|.+..++...... +..+. .+. +|+.|+++.
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 88766544211000 00000 000 334444431
Q ss_pred ---cchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccc
Q 002133 692 ---PDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQEL 768 (961)
Q Consensus 692 ---~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 768 (961)
+..+..+++|+.+++++|.+. ..+......+.++.+.+..+.....+......+++|+.|++++|.....++..
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~- 344 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG- 344 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS-
T ss_pred ccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh-
Confidence 122444556666666666553 33333444455666666554444333222233466666666666554333332
Q ss_pred cCCCCccCCcEEEeecCCCcccccCCCCCccCCccceecccc
Q 002133 769 DNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCN 810 (961)
Q Consensus 769 ~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~ 810 (961)
.+..+++|+.|++++|..............+++|+.|++++
T Consensus 345 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 345 -CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp -TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS
T ss_pred -hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC
Confidence 12556666666666653322211011344455666666555
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3.1e-26 Score=274.14 Aligned_cols=133 Identities=20% Similarity=0.254 Sum_probs=104.1
Q ss_pred hcCCCcEEecCCCCCCCC-CCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCE
Q 002133 510 ARKNPTAISIPFRDISEL-PDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRT 586 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~l-p~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~ 586 (961)
...++++|++++|.+..+ |..+ ++++|++|++++|.+.+..|. .|+++++|++|++++|.++.+ |..++++++|++
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 456889999999988766 4444 889999999999988754454 458899999999999999887 667889999999
Q ss_pred EEccCCCCCCC--ccccCCCCCcEEEeccCcCCcc-chhhhcCCCcC--EEecCCCCCCcccC
Q 002133 587 LSFDCCHLEDV--ARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLK--LLDLSNCSKLKVIK 644 (961)
Q Consensus 587 L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~--~L~l~~~~~l~~~~ 644 (961)
|++++|.+++. +.+..+++|++|++++|.++.+ |..++.+++|+ .|++++| .+..++
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~ 195 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIE 195 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC-CCCEEC
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC-ccCccC
Confidence 99999988872 6666688999999999988876 44578888887 7777773 344333
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=9.4e-27 Score=285.07 Aligned_cols=367 Identities=17% Similarity=0.163 Sum_probs=282.7
Q ss_pred hcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCC-CCCccccCCcCCCEEE
Q 002133 510 ARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLGSLINLRTLS 588 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~~~~l~~L~~L~ 588 (961)
...++++|++++|.+....+...+++|++|++++|.+.+.+|. ++++++|++|++++|.+. .+|..++.+++|++|+
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp CCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred cCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 4578999999999886655556899999999999999877776 688999999999999998 5688899999999999
Q ss_pred ccCCCCCCC-ccccCCCCCcEEEeccCcCC-ccchhhhcC-CCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCc
Q 002133 589 FDCCHLEDV-ARVGDLAKLEILSFRNSHIE-QLPEQIGNL-TRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 589 L~~~~l~~~-~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
+++|.+++. +.. .+++|++|++++|.++ .+|..+..+ ++|++|++++|...+.+|. .++++++|++|++++|.+.
T Consensus 254 Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 254 ISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp CCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEE
T ss_pred CCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCccc
Confidence 999998763 333 8999999999999888 888887765 9999999999543334544 4899999999999998765
Q ss_pred -cccCCCccchHhhcCCCCCCEEEcc-------Ccchhcccc-ccccccccceeEEEecccCCCCC--CCccceEEecCC
Q 002133 666 -KVEGQSNASVVELKQLSSLTILDMH-------IPDAQLLLE-DLISLDLERYRIFIGDVWNWSGK--YECSRTLKLKLD 734 (961)
Q Consensus 666 -~~~~~~~~~~~~l~~l~~L~~L~l~-------~~~~~~~~~-~L~~l~L~~~~i~~~~~~~~~~~--~~~l~~l~L~~~ 734 (961)
.++. ..+..+++|+.|+++ ++..+..+. +|+.++|++|.+... .+..... ...++.+.+..+
T Consensus 332 ~~ip~------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~-~~~~~~~~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 332 GELPM------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP-ILPNLCQNPKNTLQELYLQNN 404 (768)
T ss_dssp EECCH------HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE-CCTTTTCSTTCCCCEEECCSS
T ss_pred CcCCH------HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC-cChhhhhcccCCccEEECCCC
Confidence 4441 348889999999986 344555565 899999999998643 3333322 456777777765
Q ss_pred Ccc-cchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccc
Q 002133 735 NSI-YLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLIL 813 (961)
Q Consensus 735 ~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~ 813 (961)
... ..|..+. .+++|+.|++++|.....+|..+ +.+++|+.|++++|.....++. ....+++|+.|+++++.-
T Consensus 405 ~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 405 GFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSL---GSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGG---GGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCC
T ss_pred ccccccCHHHh-cCCCCCEEECcCCcccCcccHHH---hcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcc
Confidence 544 3455444 45899999999998777777776 8899999999999975555544 566789999999998643
Q ss_pred cccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccc
Q 002133 814 LEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVN 893 (961)
Q Consensus 814 L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~ 893 (961)
...++ . ....+++|++|++++|.-...+| .. +..+++|++|++++|.....+ |..+..
T Consensus 479 ~~~~p-~------~l~~l~~L~~L~L~~N~l~~~~p-~~-~~~l~~L~~L~L~~N~l~~~~-------------p~~l~~ 536 (768)
T 3rgz_A 479 TGEIP-S------GLSNCTNLNWISLSNNRLTGEIP-KW-IGRLENLAILKLSNNSFSGNI-------------PAELGD 536 (768)
T ss_dssp CSCCC-G------GGGGCTTCCEEECCSSCCCSCCC-GG-GGGCTTCCEEECCSSCCEEEC-------------CGGGGG
T ss_pred cCcCC-H------HHhcCCCCCEEEccCCccCCcCC-hH-HhcCCCCCEEECCCCcccCcC-------------CHHHcC
Confidence 32331 1 12678999999999985433454 33 588999999999999655555 456688
Q ss_pred cccccceeccccccccccCCCC
Q 002133 894 FNHLHSLALRRLPQLTSSGFYL 915 (961)
Q Consensus 894 l~~L~~L~l~~c~~L~~i~~~~ 915 (961)
+++|+.|++++|+-...+|...
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGG
T ss_pred CCCCCEEECCCCccCCcCChHH
Confidence 9999999999998777777654
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=6.4e-27 Score=283.84 Aligned_cols=348 Identities=15% Similarity=0.178 Sum_probs=245.4
Q ss_pred CCCCCCCCcc-CCCceeEEEeccCCCCC-----------------CCChhh-hhCCCceeEEEecCCCCC-CCCccccCC
Q 002133 522 RDISELPDSL-QCTRLKLFLLFTEDSSL-----------------QIPNQF-FDGMTELLVLHLTGIHFP-SLPLSLGSL 581 (961)
Q Consensus 522 ~~~~~lp~~~-~~~~L~~L~l~~n~~~~-----------------~~~~~~-~~~l~~L~~L~L~~~~~~-~lp~~~~~l 581 (961)
|.+..+|..+ ++++|++|+|++|.+.+ .+|..+ |.++++|++|+|++|.+. .+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4555577766 78888888888888876 277665 347888888888888765 678888888
Q ss_pred cCCCEEEccCCC-CCC---CccccCC-------CCCcEEEeccCcCCccch--hhhcCCCcCEEecCCCCCCcccChHHH
Q 002133 582 INLRTLSFDCCH-LED---VARVGDL-------AKLEILSFRNSHIEQLPE--QIGNLTRLKLLDLSNCSKLKVIKPEVI 648 (961)
Q Consensus 582 ~~L~~L~L~~~~-l~~---~~~~~~l-------~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~~l 648 (961)
++|++|+|++|+ +++ |..++++ ++|++|++++|.++.+|. .++++++|++|++++ +.++.+| .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~-N~l~~lp--~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NKVRHLE--AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTT-SCCCBCC--CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCC-CCcccch--hh
Confidence 888888888887 764 3444444 488888888888888887 788888888888888 4566777 37
Q ss_pred hcCccCCEEEccCCCCccccCCCccchHhhcCCCC-CCEEEcc------Ccchhcccc--ccccccccceeEEEecccCC
Q 002133 649 SRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSS-LTILDMH------IPDAQLLLE--DLISLDLERYRIFIGDVWNW 719 (961)
Q Consensus 649 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~------~~~~~~~~~--~L~~l~L~~~~i~~~~~~~~ 719 (961)
+.+++|++|++++|.+..++ ..+..+++ |+.|+++ +|..+.... +|+.++|++|.+.. ..+.+
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp-------~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g-~ip~l 663 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIP-------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNI 663 (876)
T ss_dssp CTTSEESEEECCSSCCSCCC-------TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT-TSSSC
T ss_pred cCCCcceEEECcCCccccch-------HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC-ccccc
Confidence 88888888888888776655 34667777 8888876 233333332 37778888887631 11111
Q ss_pred ---CC--CCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccC-----CCCccCCcEEEeecCCCcc
Q 002133 720 ---SG--KYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDN-----GEGFPRLKHLHVQNDPKIL 789 (961)
Q Consensus 720 ---~~--~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-----~~~l~~L~~L~L~~~~~l~ 789 (961)
.. ....++.+.|+.+....+|.++...+++|+.|+|++|... .+|..... ..++++|+.|+|++|. +.
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~ 741 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK-LT 741 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC-CC
T ss_pred hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC-Cc
Confidence 11 1235667777776666788887777799999999998655 56654311 1245599999999994 55
Q ss_pred cccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeec------CCCCcccCChHHHhhcccccEE
Q 002133 790 CIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQ------CHRLKHLFPSFMAEKLLQLEEL 863 (961)
Q Consensus 790 ~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~L~~l~~~~~~~~l~~L~~L 863 (961)
.++.......+++|+.|+++++ .++.++. ....+++|+.|++++ |.....+| .. +.++++|+.|
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~-------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~-l~~L~~L~~L 811 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYN-CFSSFPT-------QPLNSSQLKAFGIRHQRDAEGNRILRQWP-TG-ITTCPSLIQL 811 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSS-CCSSCCC-------GGGGCTTCCEEECCCCBCTTCCBCCCCCC-TT-GGGCSSCCEE
T ss_pred cchHHhhhccCCCcCEEEeCCC-CCCccch-------hhhcCCCCCEEECCCCCCcccccccccCh-HH-HhcCCCCCEE
Confidence 6654311237899999999984 4554422 126789999999987 32333444 33 4789999999
Q ss_pred eEeccccccccccccccCCccCCCcccccccccccceeccccccc
Q 002133 864 EVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQL 908 (961)
Q Consensus 864 ~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L 908 (961)
++++|.. +.+|. . -+++|+.|+|++|+-.
T Consensus 812 ~Ls~N~L-~~Ip~-------------~--l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 812 QIGSNDI-RKVDE-------------K--LTPQLYILDIADNPNI 840 (876)
T ss_dssp ECCSSCC-CBCCS-------------C--CCSSSCEEECCSCTTC
T ss_pred ECCCCCC-CccCH-------------h--hcCCCCEEECCCCCCC
Confidence 9999954 77742 2 2379999999999743
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=5.9e-27 Score=286.87 Aligned_cols=266 Identities=22% Similarity=0.193 Sum_probs=111.4
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCC-CCCccccCCcCCCEEEccCCCCCC--Cc-cccCCCCCc
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLGSLINLRTLSFDCCHLED--VA-RVGDLAKLE 607 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~~--~~-~~~~l~~L~ 607 (961)
.+++|++|++++|.+.+.+|..++..+++|++|++++|.+. .+|..++.+++|++|++++|.+++ |. .++++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 44444444444444444444443333344444444444444 334444444444444444444432 21 244444444
Q ss_pred EEEeccCcCC-ccchhhhcCC-CcCEEecCCCCCCcccChHHHhc--CccCCEEEccCCCCccccCCCccchHhhcCCCC
Q 002133 608 ILSFRNSHIE-QLPEQIGNLT-RLKLLDLSNCSKLKVIKPEVISR--LSRLNELYMGNSFTRKVEGQSNASVVELKQLSS 683 (961)
Q Consensus 608 ~L~l~~~~l~-~lp~~~~~l~-~L~~L~l~~~~~l~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 683 (961)
+|++++|.++ .+|..+.+++ +|++|++++|.....+|+. +.. +++|++|++++|.+... ....+.++++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~------~p~~l~~l~~ 419 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNNGFTGK------IPPTLSNCSE 419 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCSTTCCCCEEECCSSEEEEE------CCGGGGGCTT
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhcccCCccEEECCCCccccc------cCHHHhcCCC
Confidence 4444444443 3444444433 4444444442222222221 222 33333333333322210 0123444455
Q ss_pred CCEEEcc-------CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcc-cchHHHHHhhccccEEEc
Q 002133 684 LTILDMH-------IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSI-YLGYGIKKLLKTTEDLYL 755 (961)
Q Consensus 684 L~~L~l~-------~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~-~~~~~~~~~l~~L~~L~L 755 (961)
|+.|+++ ++..+..+++|+.++|++|.+. +..+........++.+.+..+... ..|.++. .+++|+.|+|
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L 497 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-GEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISL 497 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEEC
T ss_pred CCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-CcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEc
Confidence 5555543 2233444444555555554432 111122222334444444443332 2233322 2355555555
Q ss_pred ccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccc
Q 002133 756 DNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNL 811 (961)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~ 811 (961)
++|.....+|..+ +.+++|+.|+|++|.....++. ....+++|+.|+++++
T Consensus 498 ~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 498 SNNRLTGEIPKWI---GRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CSSCCCSCCCGGG---GGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSS
T ss_pred cCCccCCcCChHH---hcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCC
Confidence 5555544455444 4555555555555544333332 3344555555555544
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=5.5e-27 Score=280.36 Aligned_cols=343 Identities=12% Similarity=0.129 Sum_probs=263.1
Q ss_pred CCCCcc-CCCceeEEEeccCCCCCC-----------------CChhhhh--CCCceeEEEecCCCCC-CCCccccCCcCC
Q 002133 526 ELPDSL-QCTRLKLFLLFTEDSSLQ-----------------IPNQFFD--GMTELLVLHLTGIHFP-SLPLSLGSLINL 584 (961)
Q Consensus 526 ~lp~~~-~~~~L~~L~l~~n~~~~~-----------------~~~~~~~--~l~~L~~L~L~~~~~~-~lp~~~~~l~~L 584 (961)
.+|..+ ++++|++|++++|.+.+. +|..+ + ++++|++|++++|.+. .+|..++++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 367666 899999999999999875 88775 5 8999999999999976 789999999999
Q ss_pred CEEEccCCC-CCC---CccccCC------CCCcEEEeccCcCCccch--hhhcCCCcCEEecCCCCCCc-ccChHHHhcC
Q 002133 585 RTLSFDCCH-LED---VARVGDL------AKLEILSFRNSHIEQLPE--QIGNLTRLKLLDLSNCSKLK-VIKPEVISRL 651 (961)
Q Consensus 585 ~~L~L~~~~-l~~---~~~~~~l------~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~-~~~~~~l~~l 651 (961)
++|++++|+ +++ |..++.+ ++|++|++++|.++.+|. .++++++|++|++++| .+. .+| .++.+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip--~~~~l 352 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP--AFGSE 352 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC--CCEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh--hhCCC
Confidence 999999998 885 5667766 999999999999999998 8999999999999995 555 888 48999
Q ss_pred ccCCEEEccCCCCccccCCCccchHhhcCCCC-CCEEEcc------Ccchhcccc--ccccccccceeEEEecccCCCC-
Q 002133 652 SRLNELYMGNSFTRKVEGQSNASVVELKQLSS-LTILDMH------IPDAQLLLE--DLISLDLERYRIFIGDVWNWSG- 721 (961)
Q Consensus 652 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~------~~~~~~~~~--~L~~l~L~~~~i~~~~~~~~~~- 721 (961)
++|++|++++|.+..++ ..+..+++ |+.|+++ +|..+.... +|+.++|++|.+. +..+....
T Consensus 353 ~~L~~L~L~~N~l~~lp-------~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~ 424 (636)
T 4eco_A 353 IKLASLNLAYNQITEIP-------ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDP 424 (636)
T ss_dssp EEESEEECCSSEEEECC-------TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT-TTTTCSSCT
T ss_pred CCCCEEECCCCcccccc-------HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC-Ccchhhhcc
Confidence 99999999999887666 45788888 9999997 334333333 7888999988863 11222222
Q ss_pred ------CCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccC-----CCCccCCcEEEeecCCCccc
Q 002133 722 ------KYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDN-----GEGFPRLKHLHVQNDPKILC 790 (961)
Q Consensus 722 ------~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-----~~~l~~L~~L~L~~~~~l~~ 790 (961)
....++.+.|+.+....+|..+...+++|+.|+|++|... .+|..... ..++++|+.|++++|. +..
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 502 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LTK 502 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CCB
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CCc
Confidence 3346777777777666788877777799999999998766 55554311 1233499999999995 446
Q ss_pred ccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeec------CCCCcccCChHHHhhcccccEEe
Q 002133 791 IANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQ------CHRLKHLFPSFMAEKLLQLEELE 864 (961)
Q Consensus 791 i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~------c~~L~~l~~~~~~~~l~~L~~L~ 864 (961)
++.......+++|+.|+++++ .++.++.. ...+++|++|++++ +.....+|. . +..+++|++|+
T Consensus 503 lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-------~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~-l~~l~~L~~L~ 572 (636)
T 4eco_A 503 LSDDFRATTLPYLVGIDLSYN-SFSKFPTQ-------PLNSSTLKGFGIRNQRDAQGNRTLREWPE-G-ITLCPSLTQLQ 572 (636)
T ss_dssp CCGGGSTTTCTTCCEEECCSS-CCSSCCCG-------GGGCSSCCEEECCSCBCTTCCBCCCCCCT-T-GGGCSSCCEEE
T ss_pred cChhhhhccCCCcCEEECCCC-CCCCcChh-------hhcCCCCCEEECCCCcccccCcccccChH-H-HhcCCCCCEEE
Confidence 654211137999999999994 45544221 25789999999965 333444543 3 47899999999
Q ss_pred EeccccccccccccccCCccCCCcccccccccccceeccccccc
Q 002133 865 VTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQL 908 (961)
Q Consensus 865 l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L 908 (961)
+++|. ++.+|. .+. ++|++|+|++|+-.
T Consensus 573 Ls~N~-l~~ip~-------------~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 573 IGSND-IRKVNE-------------KIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCSSC-CCBCCS-------------CCC--TTCCEEECCSCTTC
T ss_pred CCCCc-CCccCH-------------hHh--CcCCEEECcCCCCc
Confidence 99995 477742 222 89999999999644
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=274.50 Aligned_cols=373 Identities=17% Similarity=0.175 Sum_probs=246.8
Q ss_pred hhcCCCcEEecCCCCCCCCCCc-c-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCC
Q 002133 509 AARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLR 585 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~ 585 (961)
..+..+++|++++|.+..++.. + ++++|++|++++|.+. .+++..|+++++|++|++++|.++.+| ..|+++++|+
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 3467899999999999887653 3 8999999999999987 456566799999999999999999774 6799999999
Q ss_pred EEEccCCCCCCC--ccccCCCCCcEEEeccCcCCc--cchhhhcCCCcCEEecCCCCCCcccChHHHhcCccC----CEE
Q 002133 586 TLSFDCCHLEDV--ARVGDLAKLEILSFRNSHIEQ--LPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRL----NEL 657 (961)
Q Consensus 586 ~L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L----~~L 657 (961)
+|++++|.++.. ..++++++|++|++++|.++. +|..++++++|++|++++ +.++.+++..++.+++| ++|
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHHHHTCTTCCCEE
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccchhccchhhhhc
Confidence 999999999983 369999999999999999885 789999999999999999 57777877778888888 788
Q ss_pred EccCCCCccccCCCc-----------------------------------------------------------------
Q 002133 658 YMGNSFTRKVEGQSN----------------------------------------------------------------- 672 (961)
Q Consensus 658 ~l~~~~~~~~~~~~~----------------------------------------------------------------- 672 (961)
++++|.+..++....
T Consensus 183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 888876554332100
Q ss_pred ----------cchHhhcCCCCCCEEEcc------CcchhccccccccccccceeEEEeccc------------------C
Q 002133 673 ----------ASVVELKQLSSLTILDMH------IPDAQLLLEDLISLDLERYRIFIGDVW------------------N 718 (961)
Q Consensus 673 ----------~~~~~l~~l~~L~~L~l~------~~~~~~~~~~L~~l~L~~~~i~~~~~~------------------~ 718 (961)
.....+..+++|+.|+++ ++.....+ +|+.+++++|.+..-+.. .
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccc
Confidence 001122334555555553 22222222 344444444332200000 0
Q ss_pred CCCCCCccceEEecCCCcccc---hHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCC
Q 002133 719 WSGKYECSRTLKLKLDNSIYL---GYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSE 795 (961)
Q Consensus 719 ~~~~~~~l~~l~L~~~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~ 795 (961)
.....+.++.+.++.+..... +..+ ..+++|+.|++++|.... ++..+ ..+++|+.|++++|. +.......
T Consensus 342 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~l~~n~l~~-~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~ 415 (570)
T 2z63_A 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVIT-MSSNF---LGLEQLEHLDFQHSN-LKQMSEFS 415 (570)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEEEEHHH-HTCSCCCEEECCSCSEEE-EEEEE---ETCTTCCEEECTTSE-EESCTTSC
T ss_pred ccccCCCCCEEeCcCCccCccccccccc-cccCccCEEECCCCcccc-ccccc---cccCCCCEEEccCCc-cccccchh
Confidence 002334566666665443333 3333 345889999999886544 33334 678888888888874 33332222
Q ss_pred CCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCC-cccCChHHHhhcccccEEeEecccccccc
Q 002133 796 GPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRL-KHLFPSFMAEKLLQLEELEVTDCKILRMI 874 (961)
Q Consensus 796 ~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L-~~l~~~~~~~~l~~L~~L~l~~c~~L~~i 874 (961)
....+++|+.|+++++. +.......+ ..+++|++|++++|... ..+|. .+..+++|++|++++|. ++.+
T Consensus 416 ~~~~l~~L~~L~l~~n~-l~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~l~~n~-l~~~ 485 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTH-TRVAFNGIF------NGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQ-LEQL 485 (570)
T ss_dssp TTTTCTTCCEEECTTSC-CEECCTTTT------TTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSC-CCEE
T ss_pred hhhcCCCCCEEeCcCCc-ccccchhhh------hcCCcCcEEECcCCcCccccchh--hhhcccCCCEEECCCCc-cccC
Confidence 45667888888888753 222211111 55778888888876422 13432 24677788888888773 3333
Q ss_pred ccccccCCccCCCcccccccccccceeccccccccccCC
Q 002133 875 VGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGF 913 (961)
Q Consensus 875 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~i~~ 913 (961)
+ +..+..+++|++|++++| +++.++.
T Consensus 486 ~------------~~~~~~l~~L~~L~l~~n-~l~~~~~ 511 (570)
T 2z63_A 486 S------------PTAFNSLSSLQVLNMASN-QLKSVPD 511 (570)
T ss_dssp C------------TTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred C------------hhhhhcccCCCEEeCCCC-cCCCCCH
Confidence 2 234456677777777776 5555554
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=4e-26 Score=263.02 Aligned_cols=362 Identities=19% Similarity=0.215 Sum_probs=256.5
Q ss_pred hcCCCcEEecCCCCCCCC-CCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCE
Q 002133 510 ARKNPTAISIPFRDISEL-PDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRT 586 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~l-p~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~ 586 (961)
.++++++|++++|.+..+ |..+ ++++|++|++++|.+.+.+++..|.++++|++|++++|.+..+ |..++++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 457899999999999776 4444 8999999999999887778777778999999999999999865 778999999999
Q ss_pred EEccCCCCCC--Ccc--ccCCCCCcEEEeccCcCCcc-chh-hhcCCCcCEEecCCCCCCcccChHHHhcC--ccCCEEE
Q 002133 587 LSFDCCHLED--VAR--VGDLAKLEILSFRNSHIEQL-PEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRL--SRLNELY 658 (961)
Q Consensus 587 L~L~~~~l~~--~~~--~~~l~~L~~L~l~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l--~~L~~L~ 658 (961)
|++++|.+++ +.. ++++++|++|++++|.++.+ |.. +.++++|++|++++ +.+..+++..+..+ .+|+.|+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT-CCBSCCCTTTSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC-CcccccChhhhhccccccccccc
Confidence 9999999887 444 88999999999999999876 554 78999999999999 46666666556665 6889999
Q ss_pred ccCCCCccccCCCc--cchHhhcCCCCCCEEEccCcch-------hcc---ccccccccccceeEEEecccCCCCCCCcc
Q 002133 659 MGNSFTRKVEGQSN--ASVVELKQLSSLTILDMHIPDA-------QLL---LEDLISLDLERYRIFIGDVWNWSGKYECS 726 (961)
Q Consensus 659 l~~~~~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~-------~~~---~~~L~~l~L~~~~i~~~~~~~~~~~~~~l 726 (961)
+++|.+..++.... .....+..+++|+.|+++.... +.. ..+++.++++++....... ...
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~ 259 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-------GHT 259 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-------TCC
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-------chh
Confidence 99887765543211 1112234556777887763221 111 1455555665554210000 000
Q ss_pred ceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCcccee
Q 002133 727 RTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSL 806 (961)
Q Consensus 727 ~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L 806 (961)
.+.......+. ....++|+.|++++|......+..+ +.+++|+.|++++|. +..+... ....+++|+.|
T Consensus 260 ---~~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L 328 (455)
T 3v47_A 260 ---NFKDPDNFTFK---GLEASGVKTCDLSKSKIFALLKSVF---SHFTDLEQLTLAQNE-INKIDDN-AFWGLTHLLKL 328 (455)
T ss_dssp ---SSCCCCTTTTG---GGTTSCCCEEECCSSCCCEECTTTT---TTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEE
T ss_pred ---hhccCcccccc---cccccCceEEEecCccccccchhhc---ccCCCCCEEECCCCc-ccccChh-HhcCcccCCEE
Confidence 00000000000 0123689999999998777666666 889999999999995 4444322 56678999999
Q ss_pred ccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCccCC
Q 002133 807 FLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHEN 886 (961)
Q Consensus 807 ~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~ 886 (961)
+++++ .++.+....+ ..+++|++|++++| .++.+++.. +..+++|++|++++| .++.++
T Consensus 329 ~Ls~N-~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~----------- 387 (455)
T 3v47_A 329 NLSQN-FLGSIDSRMF------ENLDKLEVLDLSYN-HIRALGDQS-FLGLPNLKELALDTN-QLKSVP----------- 387 (455)
T ss_dssp ECCSS-CCCEECGGGG------TTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCC-----------
T ss_pred ECCCC-ccCCcChhHh------cCcccCCEEECCCC-cccccChhh-ccccccccEEECCCC-ccccCC-----------
Confidence 99985 4555533322 67899999999997 677775544 478999999999998 566664
Q ss_pred CcccccccccccceeccccccccccC
Q 002133 887 GSMRVVNFNHLHSLALRRLPQLTSSG 912 (961)
Q Consensus 887 ~~~~l~~l~~L~~L~l~~c~~L~~i~ 912 (961)
+..+..+++|++|+++++|--...+
T Consensus 388 -~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 388 -DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp -TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred -HhHhccCCcccEEEccCCCcccCCC
Confidence 2345788999999999886554443
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.8e-25 Score=267.45 Aligned_cols=364 Identities=16% Similarity=0.186 Sum_probs=188.0
Q ss_pred cCCCcEEecCCCCCCCCCC-cc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCEE
Q 002133 511 RKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTL 587 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L 587 (961)
..++++|++++|.+..+++ .+ ++++|++|++++|.+.+..|.. |+++++|++|++++|.+..+| ..++++++|++|
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh-cCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 4567777777777766543 33 6777777777777766433433 466777777777777776654 556777777777
Q ss_pred EccCCCCCC---CccccCCCCCcEEEeccCcCCccch-hhhcCC---------------------------CcCEEecCC
Q 002133 588 SFDCCHLED---VARVGDLAKLEILSFRNSHIEQLPE-QIGNLT---------------------------RLKLLDLSN 636 (961)
Q Consensus 588 ~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~---------------------------~L~~L~l~~ 636 (961)
++++|.++. |..++++++|++|++++|.++.++. .++.++ +|+.|++++
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccC
Confidence 777777653 4567777777777777766664432 122222 233333333
Q ss_pred C-------------------------------------------------------------------------------
Q 002133 637 C------------------------------------------------------------------------------- 637 (961)
Q Consensus 637 ~------------------------------------------------------------------------------- 637 (961)
|
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence 2
Q ss_pred -CCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccCc-----chhccccccccccccceeE
Q 002133 638 -SKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIP-----DAQLLLEDLISLDLERYRI 711 (961)
Q Consensus 638 -~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-----~~~~~~~~L~~l~L~~~~i 711 (961)
+.+..+| .+..+++|++|++++|.+..++. + .+++|+.|+++.. ..+..+++|+.+++++|.+
T Consensus 294 ~~~~~~l~--~l~~~~~L~~L~l~~n~l~~lp~--------~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 294 GVSIKYLE--DVPKHFKWQSLSIIRCQLKQFPT--------L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp SCCCCCCC--CCCTTCCCSEEEEESCCCSSCCC--------C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCE
T ss_pred Cccchhhh--hccccccCCEEEcccccCccccc--------C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCcc
Confidence 1223333 25566678888888887765552 2 5566666666522 1233455566666666665
Q ss_pred EEec-ccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCccccc-ccccCCCCccCCcEEEeecCCCcc
Q 002133 712 FIGD-VWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIV-QELDNGEGFPRLKHLHVQNDPKIL 789 (961)
Q Consensus 712 ~~~~-~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~ 789 (961)
.... .+......+.++.+.++.+....+|..+. .+++|+.|++++|......+ ..+ ..+++|+.|++++|....
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~ 438 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM-GLEELQHLDFQHSTLKRVTEFSAF---LSLEKLLYLDISYTNTKI 438 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEEECCCCT-TCTTCCEEECTTSEEESTTTTTTT---TTCTTCCEEECTTSCCEE
T ss_pred CCCcchhhhhccCCcccEeECCCCccccchhhcc-CCCCCCeeECCCCccCCccChhhh---hccccCCEEECcCCCCCc
Confidence 4321 11112223345555555444333332222 23556666666554443332 222 455566666666554322
Q ss_pred cccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccc
Q 002133 790 CIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCK 869 (961)
Q Consensus 790 ~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 869 (961)
..+. ....+++|+.|+++++.--....... ...+++|++|++++| .++.+++.. +..+++|++|++++|.
T Consensus 439 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~------~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 439 DFDG--IFLGLTSLNTLKMAGNSFKDNTLSNV------FANTTNLTFLDLSKC-QLEQISWGV-FDTLHRLQLLNMSHNN 508 (606)
T ss_dssp CCTT--TTTTCTTCCEEECTTCEEGGGEECSC------CTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred cchh--hhcCCCCCCEEECCCCcCCCcchHHh------hccCCCCCEEECCCC-cCCccChhh-hcccccCCEEECCCCc
Confidence 2221 34445556666665542211111111 134555566666554 344443322 2455555566555552
Q ss_pred cccccccccccCCccCCCcccccccccccceeccccccccccCCC
Q 002133 870 ILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGFY 914 (961)
Q Consensus 870 ~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~i~~~ 914 (961)
+..++ +..+..+++|++|++++| +++++|..
T Consensus 509 -l~~~~------------~~~~~~l~~L~~L~l~~N-~l~~~p~~ 539 (606)
T 3vq2_A 509 -LLFLD------------SSHYNQLYSLSTLDCSFN-RIETSKGI 539 (606)
T ss_dssp -CSCEE------------GGGTTTCTTCCEEECTTS-CCCCEESC
T ss_pred -CCCcC------------HHHccCCCcCCEEECCCC-cCcccCHh
Confidence 22221 223344555555555555 24454443
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=6.5e-25 Score=257.43 Aligned_cols=376 Identities=13% Similarity=0.098 Sum_probs=183.5
Q ss_pred cEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCC
Q 002133 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (961)
Q Consensus 515 ~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 593 (961)
+++++++|.+..+|..+. ++|++|++++|.+. .+++..|.++++|++|++++|.++.+ |..|+++++|++|+|++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 456666666666665443 56666666666655 33333345666666666666666654 5556666666666666666
Q ss_pred CCCCccccCCCCCcEEEeccCcCCc--cchhhhcCCCcCEEecCCCCCCcccChHHHhcCccC--CEEEccCCCC--c-c
Q 002133 594 LEDVARVGDLAKLEILSFRNSHIEQ--LPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRL--NELYMGNSFT--R-K 666 (961)
Q Consensus 594 l~~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L--~~L~l~~~~~--~-~ 666 (961)
++.++.. .+++|++|++++|.++. +|..++++++|++|++++| .+.. ..+..+++| ++|++++|.+ . .
T Consensus 81 l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 81 LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeeccccccccc
Confidence 6653222 56666666666666653 3455666666666666663 3333 124555555 6666655543 1 0
Q ss_pred ccCC-------------------------------------------------CccchHhhcCCCCCCEEEccCcch---
Q 002133 667 VEGQ-------------------------------------------------SNASVVELKQLSSLTILDMHIPDA--- 694 (961)
Q Consensus 667 ~~~~-------------------------------------------------~~~~~~~l~~l~~L~~L~l~~~~~--- 694 (961)
.++. ....+..+..+++|+.|++.....
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 0100 011123455666777766652110
Q ss_pred -------hccccccccccccceeEEEecccCCC-----CCCCccceEEecCCCcccch-HHHHHhh--ccccEEEccccc
Q 002133 695 -------QLLLEDLISLDLERYRIFIGDVWNWS-----GKYECSRTLKLKLDNSIYLG-YGIKKLL--KTTEDLYLDNLN 759 (961)
Q Consensus 695 -------~~~~~~L~~l~L~~~~i~~~~~~~~~-----~~~~~l~~l~L~~~~~~~~~-~~~~~~l--~~L~~L~L~~~~ 759 (961)
....++|+.+++++|.+. +..+... .....++.+.+..+.. .+| .++...+ .+|+.|++++|.
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQ-GQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEE-SCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHhhhCcccEEEeeccccc-CccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCc
Confidence 011347788888888764 2334433 4555666666666554 444 3333322 235555555544
Q ss_pred CcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEe
Q 002133 760 GIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINI 839 (961)
Q Consensus 760 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l 839 (961)
..... ....+++|++|++++|.....++. ....+++|+.|+++++ .++.++..+... ..+++|++|++
T Consensus 314 l~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N-~l~~l~~~~~~~----~~l~~L~~L~L 381 (520)
T 2z7x_B 314 MVHML-----CPSKISPFLHLDFSNNLLTDTVFE--NCGHLTELETLILQMN-QLKELSKIAEMT----TQMKSLQQLDI 381 (520)
T ss_dssp CCCCC-----CCSSCCCCCEEECCSSCCCTTTTT--TCCCCSSCCEEECCSS-CCCBHHHHHHHH----TTCTTCCEEEC
T ss_pred ccccc-----chhhCCcccEEEeECCccChhhhh--hhccCCCCCEEEccCC-ccCccccchHHH----hhCCCCCEEEC
Confidence 32111 013445555555555532222221 2344555555555542 222211100001 33445555555
Q ss_pred ecCCCCcc-cCChHHHhhcccccEEeEeccccccccccccc--------cCCccCCCcccccccccccceeccccccccc
Q 002133 840 EQCHRLKH-LFPSFMAEKLLQLEELEVTDCKILRMIVGEET--------DNHDHENGSMRVVNFNHLHSLALRRLPQLTS 910 (961)
Q Consensus 840 ~~c~~L~~-l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~--------~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~ 910 (961)
++| .++. +|.. .+..+++|++|++++|.....++.... ........|..+..+++|++|++++| +++.
T Consensus 382 s~N-~l~~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~ 458 (520)
T 2z7x_B 382 SQN-SVSYDEKKG-DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKS 458 (520)
T ss_dssp CSS-CCBCCGGGC-SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred CCC-cCCcccccc-hhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCc
Confidence 543 2332 3221 123344444444444422111111000 00000012344567888899998887 6777
Q ss_pred cCCC
Q 002133 911 SGFY 914 (961)
Q Consensus 911 i~~~ 914 (961)
+|..
T Consensus 459 l~~~ 462 (520)
T 2z7x_B 459 VPDG 462 (520)
T ss_dssp CCTT
T ss_pred cCHH
Confidence 7765
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.2e-25 Score=265.63 Aligned_cols=126 Identities=21% Similarity=0.357 Sum_probs=81.1
Q ss_pred cCCCcEEecCCCCCCCCCC-cc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCcc-ccCCcCCCEE
Q 002133 511 RKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTL 587 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L 587 (961)
...+++|++++|.+..++. .+ ++++|++|++++|.+.+ +++..|.++++|++|++++|.+..+|.. ++++++|++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 3567777777777765532 33 67777777777777663 3333346677777777777777766443 6777777777
Q ss_pred EccCCCCCC---CccccCCCCCcEEEeccCc-CCccch-hhhcCCCcCEEecCCC
Q 002133 588 SFDCCHLED---VARVGDLAKLEILSFRNSH-IEQLPE-QIGNLTRLKLLDLSNC 637 (961)
Q Consensus 588 ~L~~~~l~~---~~~~~~l~~L~~L~l~~~~-l~~lp~-~~~~l~~L~~L~l~~~ 637 (961)
++++|.++. +..++++++|++|++++|. +..+|. .+.++++|++|++++|
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 777776654 3556677777777777765 455553 4666666666666663
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=6.3e-25 Score=253.21 Aligned_cols=343 Identities=17% Similarity=0.187 Sum_probs=264.7
Q ss_pred hcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEc
Q 002133 510 ARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 589 (961)
...+++.|++.++.+..+|....+++|++|++++|.+.+ +++ +.++++|++|++++|.+..++. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 356899999999999999876689999999999999874 444 6899999999999999998877 999999999999
Q ss_pred cCCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccC
Q 002133 590 DCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (961)
Q Consensus 590 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 669 (961)
++|.+++.+.+.++++|++|++++|.++.+|. ++++++|++|++.+ .+..+++ +.++++|++|++++|.+..++
T Consensus 120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~~~- 193 (466)
T 1o6v_A 120 FNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSDIS- 193 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCCCG-
T ss_pred CCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCCCh-
Confidence 99999997669999999999999999998874 88999999999964 4555544 889999999999998766543
Q ss_pred CCccchHhhcCCCCCCEEEccCc-----chhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHH
Q 002133 670 QSNASVVELKQLSSLTILDMHIP-----DAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIK 744 (961)
Q Consensus 670 ~~~~~~~~l~~l~~L~~L~l~~~-----~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~ 744 (961)
.+..+++|+.|+++.. .....+++|+.+++++|.+... ......+.++.+.+..+.....+. .
T Consensus 194 -------~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 194 -------VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp -------GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred -------hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchh--h
Confidence 4778889999998732 1255677888899988876422 223344567777777655444443 3
Q ss_pred HhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceecccccccccccccccccc
Q 002133 745 KLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQL 824 (961)
Q Consensus 745 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~ 824 (961)
..+++|+.|++++|..... +. + ..+++|+.|++++|. +..++ ....+++|+.|+++++ .+..+. +.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~-~~-~---~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~L~L~~n-~l~~~~----~~ 327 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNI-SP-L---AGLTALTNLELNENQ-LEDIS---PISNLKNLTYLTLYFN-NISDIS----PV 327 (466)
T ss_dssp TTCTTCSEEECCSSCCCCC-GG-G---TTCTTCSEEECCSSC-CSCCG---GGGGCTTCSEEECCSS-CCSCCG----GG
T ss_pred hcCCCCCEEECCCCccCcc-cc-c---cCCCccCeEEcCCCc-ccCch---hhcCCCCCCEEECcCC-cCCCch----hh
Confidence 3468899999998865443 32 3 778999999999985 44443 3567899999999986 344432 12
Q ss_pred ccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccccccccceeccc
Q 002133 825 TEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRR 904 (961)
Q Consensus 825 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 904 (961)
..+++|++|++++| .++.++ .+..+++|+.|++++|. +..++ + +..+++|+.|++++
T Consensus 328 ----~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~------------~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 328 ----SSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLT------------P--LANLTRITQLGLND 384 (466)
T ss_dssp ----GGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCG------------G--GTTCTTCCEEECCC
T ss_pred ----ccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccc------------h--hhcCCCCCEEeccC
Confidence 67899999999997 677763 24789999999999994 44442 1 47889999999999
Q ss_pred cccccccC
Q 002133 905 LPQLTSSG 912 (961)
Q Consensus 905 c~~L~~i~ 912 (961)
|+ +..+|
T Consensus 385 n~-~~~~p 391 (466)
T 1o6v_A 385 QA-WTNAP 391 (466)
T ss_dssp EE-EECCC
T ss_pred Cc-ccCCc
Confidence 85 44443
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.7e-24 Score=262.68 Aligned_cols=294 Identities=18% Similarity=0.110 Sum_probs=198.2
Q ss_pred hcCCCcEEecCCCCCCCCCCc-c-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCE
Q 002133 510 ARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRT 586 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~ 586 (961)
.+.++++|++++|.+..++.. + ++++|++|++++|.+.+..| ..|+++++|++|++++|.+..+|. .|+++++|++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 457899999999999988864 3 89999999999999985545 456899999999999999999976 5999999999
Q ss_pred EEccCCCCCC--CccccCCCCCcEEEeccCcCCcc-chhhhcCCCcCEEecCCCCCCcccChHHHh--cCccCCEEEccC
Q 002133 587 LSFDCCHLED--VARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVIS--RLSRLNELYMGN 661 (961)
Q Consensus 587 L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~~L~l~~ 661 (961)
|++++|.+++ +..++++++|++|++++|.++.+ |..++++++|++|++++ +.++.+++..+. .+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhccccccccEEECCC
Confidence 9999999988 36799999999999999999865 45588999999999999 567888776655 568999999999
Q ss_pred CCCccccCCCccchHhhc------------------------CCCCCCEEEccC-------cchhccccc--cccccccc
Q 002133 662 SFTRKVEGQSNASVVELK------------------------QLSSLTILDMHI-------PDAQLLLED--LISLDLER 708 (961)
Q Consensus 662 ~~~~~~~~~~~~~~~~l~------------------------~l~~L~~L~l~~-------~~~~~~~~~--L~~l~L~~ 708 (961)
|.+..++.. .+..+. ..++|+.|+++. +..+..++. |+.++|++
T Consensus 181 n~l~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 181 NQIKEFSPG---CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp CCCCCBCTT---GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CcccccChh---hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 876654421 111111 124555665542 222333333 66777777
Q ss_pred eeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcc-----ccccc-ccCCCCccCCcEEEe
Q 002133 709 YRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQ-----NIVQE-LDNGEGFPRLKHLHV 782 (961)
Q Consensus 709 ~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-----~~~~~-~~~~~~l~~L~~L~L 782 (961)
|.+.... +......+.++.+.+..+.....+......+++|+.|+++++.... .+|.. -..+..+++|+.|++
T Consensus 258 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 258 NNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp SCCCEEC-TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred CCcCccC-cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 6654221 2233344556666665544333322222334666677666543221 11110 002255677777777
Q ss_pred ecCCCcccccCCCCCccCCccceeccccc
Q 002133 783 QNDPKILCIANSEGPVIFPLLQSLFLCNL 811 (961)
Q Consensus 783 ~~~~~l~~i~~~~~~~~~~~L~~L~l~~~ 811 (961)
++|. +..+... ....+++|+.|+++++
T Consensus 337 ~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 337 EDND-IPGIKSN-MFTGLINLKYLSLSNS 363 (680)
T ss_dssp CSCC-BCCCCTT-TTTTCTTCCEEECTTC
T ss_pred CCCc-cCCCChh-HhccccCCcEEECCCC
Confidence 7764 2232221 3455677777777664
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=268.79 Aligned_cols=394 Identities=19% Similarity=0.180 Sum_probs=247.1
Q ss_pred hhhhHHhhhcCCCcEEecCCCCCCCCC-Ccc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-Cccc
Q 002133 502 VKEEVEKAARKNPTAISIPFRDISELP-DSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSL 578 (961)
Q Consensus 502 ~~~~~~~~~~~~l~~L~l~~~~~~~lp-~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~ 578 (961)
+...|. .+.++++|++++|.+..++ ..+ ++++|++|++++|...+.+++..|+++++|++|+|++|.+..+ |..|
T Consensus 16 L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 16 LTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 344443 6789999999999998764 444 9999999999999877788777779999999999999999966 8899
Q ss_pred cCCcCCCEEEccCCCCCC--Ccc--ccCCCCCcEEEeccCcCCcc--chhhhcCCCcCEEecCCCCCCcccChHHHhcC-
Q 002133 579 GSLINLRTLSFDCCHLED--VAR--VGDLAKLEILSFRNSHIEQL--PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRL- 651 (961)
Q Consensus 579 ~~l~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~l~~~~l~~l--p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l- 651 (961)
+++++|++|+|++|.+++ +.. ++++++|++|++++|.++.+ +..++++++|++|++++ +.++.+.+..+..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQ 172 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHHccccc
Confidence 999999999999999987 444 99999999999999999866 35699999999999999 55666555557766
Q ss_pred -ccCCEEEccCCCCccccCCCccchHhhcCCC------CCCEEEccCcc-------h-----------------------
Q 002133 652 -SRLNELYMGNSFTRKVEGQSNASVVELKQLS------SLTILDMHIPD-------A----------------------- 694 (961)
Q Consensus 652 -~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~-------~----------------------- 694 (961)
++|+.|++++|.+..... ..+..+. .|+.|+++... .
T Consensus 173 ~~~L~~L~L~~n~l~~~~~------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVS------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp HCSSCCCEECCSBSCCCCC------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred CCccceEECCCCccccccc------cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 788888888776543211 0111111 35555554210 0
Q ss_pred -------------hc--cccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEccccc
Q 002133 695 -------------QL--LLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLN 759 (961)
Q Consensus 695 -------------~~--~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 759 (961)
+. ..++|+.++|++|.+... .+......+.++.+.|..+.....+......+++|++|+|++|.
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence 00 014556666666665422 22333445566667776655444433333345777777777776
Q ss_pred CcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccc---------cccccccCcCc
Q 002133 760 GIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCG---------SQVQLTEDNRS 830 (961)
Q Consensus 760 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~---------~~~~~~~~~~~ 830 (961)
.....+..+ .++++|+.|++++|. +..++.. ....+++|+.|+++++ .++.++. ..-........
T Consensus 326 l~~~~~~~~---~~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~~~~~L~~L~l~~N~l~~l~~~ 399 (844)
T 3j0a_A 326 LGELYSSNF---YGLPKVAYIDLQKNH-IAIIQDQ-TFKFLEKLQTLDLRDN-ALTTIHFIPSIPDIFLSGNKLVTLPKI 399 (844)
T ss_dssp CSCCCSCSC---SSCTTCCEEECCSCC-CCCCCSS-CSCSCCCCCEEEEETC-CSCCCSSCCSCSEEEEESCCCCCCCCC
T ss_pred CCccCHHHh---cCCCCCCEEECCCCC-CCccChh-hhcCCCCCCEEECCCC-CCCcccCCCCcchhccCCCCccccccc
Confidence 544444444 667777777777773 4444332 4455677777777663 2322210 00000000011
Q ss_pred CCCccEEEeecCCCCcccCChHHHhhcccccEEeEecccccccccccccc-------------CCcc-----CCCccccc
Q 002133 831 FTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETD-------------NHDH-----ENGSMRVV 892 (961)
Q Consensus 831 l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~-------------~~~~-----~~~~~~l~ 892 (961)
..+++.|+++++ .++.++....+..+++|+.|++++|. +..++..... ..+. ...+..+.
T Consensus 400 ~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 400 NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp CTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred ccccceeecccC-ccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 223334444432 33443333344567777777777773 3322211000 0000 11123466
Q ss_pred ccccccceeccccccccccCCC
Q 002133 893 NFNHLHSLALRRLPQLTSSGFY 914 (961)
Q Consensus 893 ~l~~L~~L~l~~c~~L~~i~~~ 914 (961)
.+++|++|+|++| +++.++..
T Consensus 478 ~l~~L~~L~Ls~N-~l~~~~~~ 498 (844)
T 3j0a_A 478 GLSHLQVLYLNHN-YLNSLPPG 498 (844)
T ss_dssp CBCCEECCCCCHH-HHTTCCTT
T ss_pred CcccccEEECCCC-cccccChh
Confidence 7888888888888 67776654
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=2.8e-25 Score=262.54 Aligned_cols=148 Identities=22% Similarity=0.231 Sum_probs=129.0
Q ss_pred EecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCCCC
Q 002133 517 ISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLE 595 (961)
Q Consensus 517 L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~ 595 (961)
.+.+.+.+..+|..+. ++|++|++++|.+.+..|. .|.++++|++|++++|.+..+ |..|+.+++|++|++++|.++
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCccccccccCC-CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 5677788899998653 7999999999998854444 458999999999999999977 477999999999999999999
Q ss_pred C-C-ccccCCCCCcEEEeccCcCCc--cchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcc
Q 002133 596 D-V-ARVGDLAKLEILSFRNSHIEQ--LPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRK 666 (961)
Q Consensus 596 ~-~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 666 (961)
+ + ..++++++|++|++++|.++. +|..++++++|++|++++|..++.+|+..+.++++|++|++++|.+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 8 4 459999999999999999984 467799999999999999776888887779999999999999987654
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-24 Score=244.84 Aligned_cols=304 Identities=15% Similarity=0.219 Sum_probs=218.7
Q ss_pred ccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCEEEccCCCCCC--CccccCCCCC
Q 002133 530 SLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKL 606 (961)
Q Consensus 530 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L 606 (961)
...+++++.|++.+|.+. .+|..+|.++++|++|++++|.+..+| ..+..+++|++|++++|.++. +..++++++|
T Consensus 41 ~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 346778888888887765 677777788888888888888888664 468888888888888888877 3557888888
Q ss_pred cEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCC
Q 002133 607 EILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLT 685 (961)
Q Consensus 607 ~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~ 685 (961)
++|++++|.++.+|.. +.++++|++|++++ +.+..+++..+..+++|++|++++|.+..++ +..+++|+
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~l~~L~ 189 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLF 189 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------GGGCTTCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCccc---------cccccccc
Confidence 8888888888888776 47788888888888 4667777666788888888888888665442 45566777
Q ss_pred EEEccCcc--hhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCccc
Q 002133 686 ILDMHIPD--AQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQN 763 (961)
Q Consensus 686 ~L~l~~~~--~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 763 (961)
.|+++... ......+|+.+++++|.+.. ++.. .+++|+.|++++|.....
T Consensus 190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~-------------------------~~~~---~~~~L~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 190 HANVSYNLLSTLAIPIAVEELDASHNSINV-------------------------VRGP---VNVELTILKLQHNNLTDT 241 (390)
T ss_dssp EEECCSSCCSEEECCSSCSEEECCSSCCCE-------------------------EECC---CCSSCCEEECCSSCCCCC
T ss_pred eeecccccccccCCCCcceEEECCCCeeee-------------------------cccc---ccccccEEECCCCCCccc
Confidence 77765321 12233455666666665421 1111 136889999988865442
Q ss_pred ccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCC
Q 002133 764 IVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCH 843 (961)
Q Consensus 764 ~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 843 (961)
..+ ..+++|+.|++++|. +..+... ....+++|+.|+++++ .++.++.. ...+++|++|++++|
T Consensus 242 --~~l---~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-------~~~l~~L~~L~L~~n- 305 (390)
T 3o6n_A 242 --AWL---LNYPGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNN-RLVALNLY-------GQPIPTLKVLDLSHN- 305 (390)
T ss_dssp --GGG---GGCTTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECCSS-CCCEEECS-------SSCCTTCCEEECCSS-
T ss_pred --HHH---cCCCCccEEECCCCc-CCCcChh-HccccccCCEEECCCC-cCcccCcc-------cCCCCCCCEEECCCC-
Confidence 233 778999999999985 3333222 5567899999999884 55555321 156899999999997
Q ss_pred CCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccccccccceeccccc
Q 002133 844 RLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLP 906 (961)
Q Consensus 844 ~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 906 (961)
.++.+|+. +..+++|+.|++++|+ +..++ +..+++|++|+++++|
T Consensus 306 ~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~---------------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 306 HLLHVERN--QPQFDRLENLYLDHNS-IVTLK---------------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCCGGG--HHHHTTCSEEECCSSC-CCCCC---------------CCTTCCCSEEECCSSC
T ss_pred cceecCcc--ccccCcCCEEECCCCc-cceeC---------------chhhccCCEEEcCCCC
Confidence 67777643 4789999999999994 44442 3678999999999875
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=8.4e-24 Score=234.15 Aligned_cols=303 Identities=17% Similarity=0.206 Sum_probs=225.9
Q ss_pred hcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEc
Q 002133 510 ARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 589 (961)
..+++++|+++++.+..++....+++|++|++++|.+. .++. +.++++|++|++++|.++.+| .+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 46789999999999988887558999999999999887 4444 688999999999999888876 5889999999999
Q ss_pred cCCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccC
Q 002133 590 DCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (961)
Q Consensus 590 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 669 (961)
++|.+++.+.+..+++|++|++++|.....+..+..+++|++|++++| .+..+++ +..+++|++|++++|.+..++
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~- 193 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDIS- 193 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCCG-
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccccc-
Confidence 999988866688999999999999954434445889999999999984 5666655 788999999999988765544
Q ss_pred CCccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhcc
Q 002133 670 QSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKT 749 (961)
Q Consensus 670 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~ 749 (961)
.+..+++|+.+++. +|.+. ..+. ...+++
T Consensus 194 -------~~~~l~~L~~L~l~-----------------~n~l~-------------------------~~~~--~~~~~~ 222 (347)
T 4fmz_A 194 -------PLASLTSLHYFTAY-----------------VNQIT-------------------------DITP--VANMTR 222 (347)
T ss_dssp -------GGGGCTTCCEEECC-----------------SSCCC-------------------------CCGG--GGGCTT
T ss_pred -------cccCCCccceeecc-----------------cCCCC-------------------------CCch--hhcCCc
Confidence 25556666665554 33221 0000 123478
Q ss_pred ccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcC
Q 002133 750 TEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNR 829 (961)
Q Consensus 750 L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~ 829 (961)
|+.|++++|.... .+. + ..+++|+.|++++|. +..++ ....+++|+.|+++++ .++.++ . . .
T Consensus 223 L~~L~l~~n~l~~-~~~-~---~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~n-~l~~~~--~--~----~ 284 (347)
T 4fmz_A 223 LNSLKIGNNKITD-LSP-L---ANLSQLTWLEIGTNQ-ISDIN---AVKDLTKLKMLNVGSN-QISDIS--V--L----N 284 (347)
T ss_dssp CCEEECCSSCCCC-CGG-G---TTCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSS-CCCCCG--G--G----G
T ss_pred CCEEEccCCccCC-Ccc-h---hcCCCCCEEECCCCc-cCCCh---hHhcCCCcCEEEccCC-ccCCCh--h--h----c
Confidence 8899998876544 332 3 778899999999884 44442 4567889999999885 455442 1 1 6
Q ss_pred cCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccccccccceeccccc
Q 002133 830 SFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLP 906 (961)
Q Consensus 830 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 906 (961)
.+++|++|++++| .++..++ ..+..+++|++|++++|+ ++.++. +..+++|++|++++|+
T Consensus 285 ~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~--------------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 285 NLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP--------------LASLSKMDSADFANQV 344 (347)
T ss_dssp GCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG--------------GGGCTTCSEESSSCC-
T ss_pred CCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-cccccC--------------hhhhhccceeehhhhc
Confidence 7899999999998 5666544 335889999999999995 555531 4788999999999985
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.4e-24 Score=256.12 Aligned_cols=304 Identities=15% Similarity=0.212 Sum_probs=210.4
Q ss_pred ccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCEEEccCCCCCC--CccccCCCCC
Q 002133 530 SLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKL 606 (961)
Q Consensus 530 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L 606 (961)
.+.+++++.|++++|.+. .+|..+|.++++|++|+|++|.+..+| ..|+.+++|++|+|++|.+++ +..++++++|
T Consensus 47 ~l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp SGGGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 346677888888887775 677777788888888888888887664 478888888888888888877 3457888888
Q ss_pred cEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCC
Q 002133 607 EILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLT 685 (961)
Q Consensus 607 ~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~ 685 (961)
++|+|++|.++.+|.. ++++++|++|++++ +.+..+++..++++++|++|++++|.+..++ +..+++|+
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~l~~L~ 195 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLF 195 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---------GGGCTTCS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCCCCCCcC---------hhhhhhhh
Confidence 8888888888888776 47888888888888 4666777666788888888888887665443 44566677
Q ss_pred EEEccCc--chhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCccc
Q 002133 686 ILDMHIP--DAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQN 763 (961)
Q Consensus 686 ~L~l~~~--~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 763 (961)
.|+++.. ..+..+.+|+.+++++|.+... +.. ..++|+.|+|++|....
T Consensus 196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~-------------------------~~~---~~~~L~~L~L~~n~l~~- 246 (597)
T 3oja_B 196 HANVSYNLLSTLAIPIAVEELDASHNSINVV-------------------------RGP---VNVELTILKLQHNNLTD- 246 (597)
T ss_dssp EEECCSSCCSEEECCTTCSEEECCSSCCCEE-------------------------ECS---CCSCCCEEECCSSCCCC-
T ss_pred hhhcccCccccccCCchhheeeccCCccccc-------------------------ccc---cCCCCCEEECCCCCCCC-
Confidence 7776532 1223344556666666654211 111 12578888888876544
Q ss_pred ccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCC
Q 002133 764 IVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCH 843 (961)
Q Consensus 764 ~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 843 (961)
+..+ ..+++|+.|+|++|......+. ....+++|+.|++++ +.++.++.. ...+++|++|++++|
T Consensus 247 -~~~l---~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~-N~l~~l~~~-------~~~l~~L~~L~Ls~N- 311 (597)
T 3oja_B 247 -TAWL---LNYPGLVEVDLSYNELEKIMYH--PFVKMQRLERLYISN-NRLVALNLY-------GQPIPTLKVLDLSHN- 311 (597)
T ss_dssp -CGGG---GGCTTCSEEECCSSCCCEEESG--GGTTCSSCCEEECTT-SCCCEEECS-------SSCCTTCCEEECCSS-
T ss_pred -Chhh---ccCCCCCEEECCCCccCCCCHH--HhcCccCCCEEECCC-CCCCCCCcc-------cccCCCCcEEECCCC-
Confidence 2333 6788888888888853333232 456678888888887 345554221 145788999999886
Q ss_pred CCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccccccccceeccccc
Q 002133 844 RLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLP 906 (961)
Q Consensus 844 ~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 906 (961)
.++.+|+. +..+++|+.|++++|. +..++ +..+++|+.|+|+++|
T Consensus 312 ~l~~i~~~--~~~l~~L~~L~L~~N~-l~~~~---------------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 312 HLLHVERN--QPQFDRLENLYLDHNS-IVTLK---------------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCCGGG--HHHHTTCSEEECCSSC-CCCCC---------------CCTTCCCSEEECCSSC
T ss_pred CCCccCcc--cccCCCCCEEECCCCC-CCCcC---------------hhhcCCCCEEEeeCCC
Confidence 56677543 4778899999998884 44331 3577888999988876
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=2e-24 Score=260.39 Aligned_cols=144 Identities=25% Similarity=0.350 Sum_probs=124.2
Q ss_pred hhcCCCcEEecCCCCCCCCCCc-c-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCC
Q 002133 509 AARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLR 585 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~ 585 (961)
..+.++++|++++|.+..+|+. + ++++|++|+|++|.+. .+++..|.++++|++|+|++|.++.+|. .|.++++|+
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 4577899999999999999864 4 8999999999999987 6777778999999999999999998875 589999999
Q ss_pred EEEccCCCCCCC--ccccCCCCCcEEEeccCcCCc--cchhhhcCCCcCEEecCCCCCCcccChHHHhcCccC
Q 002133 586 TLSFDCCHLEDV--ARVGDLAKLEILSFRNSHIEQ--LPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRL 654 (961)
Q Consensus 586 ~L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L 654 (961)
+|+|++|+++.+ ..|+++++|++|++++|.++. +|..++.+++|++|++++ +.++.+++..+..+.++
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTC
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccccchhhh
Confidence 999999999983 469999999999999999884 578899999999999999 56777766555554443
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=7.8e-25 Score=256.75 Aligned_cols=355 Identities=16% Similarity=0.158 Sum_probs=230.3
Q ss_pred cCCCcEEecCCCCCCCCCC-cc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEE
Q 002133 511 RKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLS 588 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~ 588 (961)
+.++++|++++|.+..++. .+ ++++|++|++++|.+.+..|. .|+++++|++|++++|.++.+|.. .+++|++|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 4789999999999988874 33 899999999999999854454 468999999999999999999877 899999999
Q ss_pred ccCCCCCC---CccccCCCCCcEEEeccCcCCccchhhhcCCCc--CEEecCCCCC--CcccChHHHh------------
Q 002133 589 FDCCHLED---VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRL--KLLDLSNCSK--LKVIKPEVIS------------ 649 (961)
Q Consensus 589 L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~--l~~~~~~~l~------------ 649 (961)
+++|.++. |..++++++|++|++++|.++. ..+..+++| ++|++++|.. ....|. .+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~-~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPE-GLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTT-TTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccc-cccccccceEEEEec
Confidence 99999876 4789999999999999998876 346677777 8888888543 122221 122
Q ss_pred --------------cCccCCEEEccCCC------------------------------CccccCCCccchHhhcCCCCCC
Q 002133 650 --------------RLSRLNELYMGNSF------------------------------TRKVEGQSNASVVELKQLSSLT 685 (961)
Q Consensus 650 --------------~l~~L~~L~l~~~~------------------------------~~~~~~~~~~~~~~l~~l~~L~ 685 (961)
++++|+.|++++|. +.. .....+......++|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~---~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW---NSFIRILQLVWHTTVW 250 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH---HHHHHHHHHHHTSSCS
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH---HHHHHHHHHhhhCccc
Confidence 23344444444332 110 0000000001123455
Q ss_pred EEEcc-------Ccchh-----cccccc--------------------------ccccccceeEEEecccCCCCCCCccc
Q 002133 686 ILDMH-------IPDAQ-----LLLEDL--------------------------ISLDLERYRIFIGDVWNWSGKYECSR 727 (961)
Q Consensus 686 ~L~l~-------~~~~~-----~~~~~L--------------------------~~l~L~~~~i~~~~~~~~~~~~~~l~ 727 (961)
.|+++ ++..+ ..++.| +.+++++|.+... ......+.++
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~l~~L~ 327 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM---LCPSKISPFL 327 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC---CCCSSCCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc---cchhhCCccc
Confidence 55443 12222 333333 4444444433110 0113445566
Q ss_pred eEEecCCCccc-chHHHHHhhccccEEEcccccCcc--cccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccc
Q 002133 728 TLKLKLDNSIY-LGYGIKKLLKTTEDLYLDNLNGIQ--NIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQ 804 (961)
Q Consensus 728 ~l~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~ 804 (961)
.+.++.+.... .|.++ ..+++|+.|++++|.... .+|..+ ..+++|+.|++++|.....++.. ....+++|+
T Consensus 328 ~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~---~~l~~L~~L~Ls~N~l~~~l~~~-~~~~l~~L~ 402 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMT---TQMKSLQQLDISQNSVSYDEKKG-DCSWTKSLL 402 (520)
T ss_dssp EEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHH---TTCTTCCEEECCSSCCBCCGGGC-SCCCCTTCC
T ss_pred EEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHH---hhCCCCCEEECCCCcCCcccccc-hhccCccCC
Confidence 66666544333 23333 235788888888876554 344444 67888888888888544335432 355678888
Q ss_pred eeccccccccccccccccccccCcCcC-CCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCc
Q 002133 805 SLFLCNLILLEKVCGSQVQLTEDNRSF-TNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHD 883 (961)
Q Consensus 805 ~L~l~~~~~L~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~ 883 (961)
.|+++++.--... + ..+ ++|++|++++| +++.+|.. +..+++|++|++++| .++.++.
T Consensus 403 ~L~Ls~N~l~~~~-----~-----~~l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~------- 461 (520)
T 2z7x_B 403 SLNMSSNILTDTI-----F-----RCLPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN-QLKSVPD------- 461 (520)
T ss_dssp EEECCSSCCCGGG-----G-----GSCCTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCCT-------
T ss_pred EEECcCCCCCcch-----h-----hhhcccCCEEECCCC-cccccchh--hhcCCCCCEEECCCC-cCCccCH-------
Confidence 8888875322222 1 122 68999999997 77788653 358999999999999 5666642
Q ss_pred cCCCcccccccccccceeccccccc
Q 002133 884 HENGSMRVVNFNHLHSLALRRLPQL 908 (961)
Q Consensus 884 ~~~~~~~l~~l~~L~~L~l~~c~~L 908 (961)
..+..+++|++|+++++|--
T Consensus 462 -----~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 462 -----GIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp -----TTTTTCTTCCEEECCSSCBC
T ss_pred -----HHhccCCcccEEECcCCCCc
Confidence 23578899999999998643
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=2.4e-24 Score=266.48 Aligned_cols=189 Identities=16% Similarity=0.142 Sum_probs=147.4
Q ss_pred cEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCC-CCC-CccccCCcCCCEEEccCC
Q 002133 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHF-PSL-PLSLGSLINLRTLSFDCC 592 (961)
Q Consensus 515 ~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~l-p~~~~~l~~L~~L~L~~~ 592 (961)
+..+.+++++..+|. -.++|++|+|++|.+.+..|.. |.++++|++|+|++|.. ..+ |..|+++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 466778889999998 5689999999999998554544 59999999999999954 466 788999999999999999
Q ss_pred CCCC--CccccCCCCCcEEEeccCcCCc-cchh--hhcCCCcCEEecCCCCCCccc-ChHHHhcCccCCEEEccCCCCcc
Q 002133 593 HLED--VARVGDLAKLEILSFRNSHIEQ-LPEQ--IGNLTRLKLLDLSNCSKLKVI-KPEVISRLSRLNELYMGNSFTRK 666 (961)
Q Consensus 593 ~l~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~ 666 (961)
.++. |..|+++++|++|++++|.++. +|.. ++++++|++|++++| .+..+ ++..++++++|++|++++|.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9988 6899999999999999999985 5655 899999999999995 55554 33458999999999999997654
Q ss_pred ccCCCccchHhhcCCCCCCEEEccCc-------chhcccc------ccccccccceeE
Q 002133 667 VEGQSNASVVELKQLSSLTILDMHIP-------DAQLLLE------DLISLDLERYRI 711 (961)
Q Consensus 667 ~~~~~~~~~~~l~~l~~L~~L~l~~~-------~~~~~~~------~L~~l~L~~~~i 711 (961)
+. ...+..+.. ++|+.|+++.. ..+..+. .|+.++|++|.+
T Consensus 163 ~~---~~~l~~l~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 163 VC---EHELEPLQG-KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp CC---SGGGHHHHH-CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred eC---HHHcccccC-CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 43 222333322 67777777632 2222222 378888888754
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=1.1e-23 Score=255.65 Aligned_cols=265 Identities=24% Similarity=0.215 Sum_probs=187.9
Q ss_pred hcCCCcEEecCCCCCCCCCCc-c-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCE
Q 002133 510 ARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRT 586 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~ 586 (961)
...++++|++++|.+..+++. + ++++|++|++++|.+. .+|...|+++++|++|++++|.+..+| ..|+++++|++
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCE
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCE
Confidence 457899999999999877543 4 8999999999999987 677766789999999999999999885 67999999999
Q ss_pred EEccCCCCCC--CccccCCCCCcEEEeccCcCCccchh-h--hcCCCcCEEecCCCCCCcccChHHHhcCccC-------
Q 002133 587 LSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-I--GNLTRLKLLDLSNCSKLKVIKPEVISRLSRL------- 654 (961)
Q Consensus 587 L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~--~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L------- 654 (961)
|++++|.+++ +..++++++|++|++++|.++.++.. + ..+++|++|++++| .++.+++..+..+++|
T Consensus 126 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTT
T ss_pred EECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhccc
Confidence 9999999887 47789999999999999999987654 3 35689999999994 6777766656666554
Q ss_pred --------------------CEEEccCCCCccccCCCccchHhhcCC--CCCCEEEccC-------cchhcccccccccc
Q 002133 655 --------------------NELYMGNSFTRKVEGQSNASVVELKQL--SSLTILDMHI-------PDAQLLLEDLISLD 705 (961)
Q Consensus 655 --------------------~~L~l~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~-------~~~~~~~~~L~~l~ 705 (961)
++|++++|.+..+.. ..+..+ ++|+.|+++. +..+..+++|+.++
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~------~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN------TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT------TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccCh------hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEee
Confidence 445555544332221 233344 3488888862 34466778888888
Q ss_pred ccceeEEEecccCCCCCCCccceEEecCCCcc---------cchHHHHHhhccccEEEcccccCcccccccccCCCCccC
Q 002133 706 LERYRIFIGDVWNWSGKYECSRTLKLKLDNSI---------YLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPR 776 (961)
Q Consensus 706 L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~---------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~ 776 (961)
|++|.+... .+........++.+.+..+... .++......+++|+.|++++|......+..+ .++++
T Consensus 279 L~~n~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~ 354 (680)
T 1ziw_A 279 LEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF---TGLIN 354 (680)
T ss_dssp CCSCCBSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT---TTCTT
T ss_pred CCCCccCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh---ccccC
Confidence 888876422 2233444556666666542111 1111122335778888888876655444444 67777
Q ss_pred CcEEEeecCC
Q 002133 777 LKHLHVQNDP 786 (961)
Q Consensus 777 L~~L~L~~~~ 786 (961)
|++|++++|.
T Consensus 355 L~~L~Ls~n~ 364 (680)
T 1ziw_A 355 LKYLSLSNSF 364 (680)
T ss_dssp CCEEECTTCB
T ss_pred CcEEECCCCc
Confidence 8888877763
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.5e-24 Score=249.41 Aligned_cols=308 Identities=20% Similarity=0.197 Sum_probs=154.6
Q ss_pred EEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCCC
Q 002133 516 AISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHL 594 (961)
Q Consensus 516 ~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l 594 (961)
.+..+++.+..+|..+ .++++.|++++|.+.+ ++...|.++++|++|+|++|.+..+ |..|+++++|++|+|++|.+
T Consensus 15 ~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 3444444444444332 1344445555444442 2222234445555555555544433 44444455555555555544
Q ss_pred CC-C-ccccCCCCCcEEEeccCcCCcc-chhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCC
Q 002133 595 ED-V-ARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQS 671 (961)
Q Consensus 595 ~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 671 (961)
+. + ..+.++++|++|++++|.++.+ |..+.++++|++|++++ +.+..+++..+..+++|++|++++|.+..++.
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 169 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-- 169 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSCCH--
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcccCh--
Confidence 44 1 2344445555555555544433 22344445555555544 33344433334444555555554444333321
Q ss_pred ccchHhhcCCCCCCEEEccCc-------chhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHH
Q 002133 672 NASVVELKQLSSLTILDMHIP-------DAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIK 744 (961)
Q Consensus 672 ~~~~~~l~~l~~L~~L~l~~~-------~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~ 744 (961)
..+.++++|+.|++... ..+..+++|+.+++++|... ..++....
T Consensus 170 ----~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~------------------------~~~~~~~~ 221 (477)
T 2id5_A 170 ----EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL------------------------DTMTPNCL 221 (477)
T ss_dssp ----HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC------------------------CEECTTTT
T ss_pred ----hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc------------------------cccCcccc
Confidence 22334444444443311 01112222222222222110 00111111
Q ss_pred HhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceecccccccccccccccccc
Q 002133 745 KLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQL 824 (961)
Q Consensus 745 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~ 824 (961)
. ..+|+.|++++|......+..+ ..+++|+.|+|++|. +..++.. ....+++|+.|+++++ .++.+....+
T Consensus 222 ~-~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~-- 292 (477)
T 2id5_A 222 Y-GLNLTSLSITHCNLTAVPYLAV---RHLVYLRFLNLSYNP-ISTIEGS-MLHELLRLQEIQLVGG-QLAVVEPYAF-- 292 (477)
T ss_dssp T-TCCCSEEEEESSCCCSCCHHHH---TTCTTCCEEECCSSC-CCEECTT-SCTTCTTCCEEECCSS-CCSEECTTTB--
T ss_pred c-CccccEEECcCCcccccCHHHh---cCccccCeeECCCCc-CCccChh-hccccccCCEEECCCC-ccceECHHHh--
Confidence 1 2478889998876543222334 778889999998885 4444433 4567888888888874 4555433322
Q ss_pred ccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccc
Q 002133 825 TEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKIL 871 (961)
Q Consensus 825 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L 871 (961)
..+++|++|++++| .++.+++. .+..+++|+.|++++|+-.
T Consensus 293 ----~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 293 ----RGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ----TTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSCEE
T ss_pred ----cCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCCCcc
Confidence 56788889999886 67777653 3477888888988888643
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.1e-23 Score=248.94 Aligned_cols=144 Identities=22% Similarity=0.306 Sum_probs=111.3
Q ss_pred CcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCC
Q 002133 514 PTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCC 592 (961)
Q Consensus 514 l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~ 592 (961)
.++++++++.+..+|.... ++|++|++++|.+. .+++..|.++++|++|++++|.++.+ |..|+++++|++|+|++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3788888888888887553 78888888888887 45544568888899999988888866 667888888999999888
Q ss_pred CCCCCccccCCCCCcEEEeccCcCCccc--hhhhcCCCcCEEecCCCCCCcccChHHHhcCccC--CEEEccCCCC
Q 002133 593 HLEDVARVGDLAKLEILSFRNSHIEQLP--EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRL--NELYMGNSFT 664 (961)
Q Consensus 593 ~l~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L--~~L~l~~~~~ 664 (961)
.++.++.. .+++|++|++++|.++.+| ..++++++|++|++++ +.+.... +..+++| ++|++++|.+
T Consensus 111 ~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCC-CccccCc---hhhhhhceeeEEEeecccc
Confidence 88874333 7888899999888888654 6788888899998888 4555432 4555555 8888888765
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=5.9e-24 Score=252.54 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=127.9
Q ss_pred CcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCC
Q 002133 514 PTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCC 592 (961)
Q Consensus 514 l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~ 592 (961)
.+.++.++.++..+|..+ .++++.|++++|.+.+ ++...|.++++|++|++++|.+..+ |..|+++++|++|+|++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 455666777788888754 3579999999999874 5555568999999999999999977 567999999999999999
Q ss_pred CCCC--CccccCCCCCcEEEeccCcCCccch-hhhcCCCcCEEecCCCCCCcc--cChHHHhcCccCCEEEccCCCCccc
Q 002133 593 HLED--VARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKV--IKPEVISRLSRLNELYMGNSFTRKV 667 (961)
Q Consensus 593 ~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~ 667 (961)
.++. +..|+++++|++|++++|.++.+|. .++++++|++|++++| .+.. +|.. ++++++|++|++++|.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCcccee
Confidence 9988 4789999999999999999998876 5899999999999994 5655 4554 89999999999999977655
Q ss_pred c
Q 002133 668 E 668 (961)
Q Consensus 668 ~ 668 (961)
+
T Consensus 165 ~ 165 (570)
T 2z63_A 165 Y 165 (570)
T ss_dssp C
T ss_pred c
Confidence 4
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.7e-23 Score=239.35 Aligned_cols=349 Identities=17% Similarity=0.142 Sum_probs=243.3
Q ss_pred CcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCC-CC-CccccCCcCCCEEEccC
Q 002133 514 PTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SL-PLSLGSLINLRTLSFDC 591 (961)
Q Consensus 514 l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~l-p~~~~~l~~L~~L~L~~ 591 (961)
-+.+...++.+..+|. -.++|++|++++|.+.+..|. .|+++++|++|++++|.+. .+ |..|.++++|++|+|++
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3467778888888887 348899999999999854454 4589999999999999987 55 56799999999999999
Q ss_pred CCCCC--CccccCCCCCcEEEeccCcCCc-cchh--hhcCCCcCEEecCCCCCCccc-ChHHHhcCccCCEEEccCCCCc
Q 002133 592 CHLED--VARVGDLAKLEILSFRNSHIEQ-LPEQ--IGNLTRLKLLDLSNCSKLKVI-KPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 592 ~~l~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
|.+++ +..++++++|++|++++|.++. +|.. +.++++|++|++++| .+..+ |...+.++++|++|++++|.+.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCccc
Confidence 99987 5789999999999999999985 4554 889999999999995 56666 4444889999999999999766
Q ss_pred cccCCCccchHhhcCC--CCCCEEEccCcchhccccccccccccceeEEEeccc-------CCCCCCCccceEEecCCCc
Q 002133 666 KVEGQSNASVVELKQL--SSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVW-------NWSGKYECSRTLKLKLDNS 736 (961)
Q Consensus 666 ~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~-------~~~~~~~~l~~l~L~~~~~ 736 (961)
.+.. ..+..+ .+|+.|+++ +|.+...... ........++.+.++.+..
T Consensus 168 ~~~~------~~l~~l~~~~L~~L~l~-----------------~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 168 SICE------EDLLNFQGKHFTLLRLS-----------------SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp CCCT------TTSGGGTTCEEEEEECT-----------------TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred ccCh------hhhhccccccccccccc-----------------cCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 5432 122222 345555554 2222100000 0000112333344433322
Q ss_pred c-cchHHHHHh--hccccEEEcccccCcccccccc-------cCCC--CccCCcEEEeecCCCcccccCCCCCccCCccc
Q 002133 737 I-YLGYGIKKL--LKTTEDLYLDNLNGIQNIVQEL-------DNGE--GFPRLKHLHVQNDPKILCIANSEGPVIFPLLQ 804 (961)
Q Consensus 737 ~-~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~~-------~~~~--~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~ 804 (961)
. ..+..+... .++|+.|++++|.......... ..+. ..++|+.|++++|......+. ....+++|+
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~ 302 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS--VFSHFTDLE 302 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT--TTTTCTTCC
T ss_pred cccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh--hcccCCCCC
Confidence 2 223333332 2789999999875443211100 0011 236899999999965443333 567789999
Q ss_pred eeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCcc
Q 002133 805 SLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDH 884 (961)
Q Consensus 805 ~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~ 884 (961)
.|+++++ .++.+....+ ..+++|++|++++| .++.+++.. +..+++|++|++++| .++.++
T Consensus 303 ~L~Ls~n-~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~--------- 363 (455)
T 3v47_A 303 QLTLAQN-EINKIDDNAF------WGLTHLLKLNLSQN-FLGSIDSRM-FENLDKLEVLDLSYN-HIRALG--------- 363 (455)
T ss_dssp EEECTTS-CCCEECTTTT------TTCTTCCEEECCSS-CCCEECGGG-GTTCTTCCEEECCSS-CCCEEC---------
T ss_pred EEECCCC-cccccChhHh------cCcccCCEEECCCC-ccCCcChhH-hcCcccCCEEECCCC-cccccC---------
Confidence 9999984 4554433222 57899999999997 677776543 488999999999999 445552
Q ss_pred CCCcccccccccccceeccccccccccCCC
Q 002133 885 ENGSMRVVNFNHLHSLALRRLPQLTSSGFY 914 (961)
Q Consensus 885 ~~~~~~l~~l~~L~~L~l~~c~~L~~i~~~ 914 (961)
+..+..+++|++|++++| ++++++..
T Consensus 364 ---~~~~~~l~~L~~L~L~~N-~l~~~~~~ 389 (455)
T 3v47_A 364 ---DQSFLGLPNLKELALDTN-QLKSVPDG 389 (455)
T ss_dssp ---TTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred ---hhhccccccccEEECCCC-ccccCCHh
Confidence 345678999999999997 67777754
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.2e-23 Score=240.32 Aligned_cols=322 Identities=21% Similarity=0.241 Sum_probs=254.9
Q ss_pred hhhcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEE
Q 002133 508 KAARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTL 587 (961)
Q Consensus 508 ~~~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L 587 (961)
.....++++|++++|.+..++...++++|++|++++|.+.+. +. +.++++|++|++++|.+..+|. +..+++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccC-hh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 345789999999999999988755999999999999998744 43 6899999999999999998876 8999999999
Q ss_pred EccCCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccc
Q 002133 588 SFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKV 667 (961)
Q Consensus 588 ~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 667 (961)
++++|.+++++.++.+++|++|+++ +.+..++. +.++++|++|++++| .+..++. +..+++|++|++++|.+..+
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC
T ss_pred ECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCccccc
Confidence 9999999997789999999999997 45666654 899999999999994 5777643 88999999999999976654
Q ss_pred cCCCccchHhhcCCCCCCEEEccCc-----chhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHH
Q 002133 668 EGQSNASVVELKQLSSLTILDMHIP-----DAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYG 742 (961)
Q Consensus 668 ~~~~~~~~~~l~~l~~L~~L~l~~~-----~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~ 742 (961)
+ .+..+++|+.|+++.. +.+..+++|+.+++++|.+..... ....+.++.+.+..+.....+.
T Consensus 215 ~--------~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 215 T--------PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp G--------GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG-
T ss_pred c--------cccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc-
Confidence 4 2667889999998732 345667888999999988743221 3445677888887765555554
Q ss_pred HHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceecccccccccccccccc
Q 002133 743 IKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQV 822 (961)
Q Consensus 743 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~ 822 (961)
...+++|+.|++++|..... +. + ..+++|+.|++++|. +..+. ....+++|+.|+++++ .++.+.
T Consensus 283 -~~~l~~L~~L~L~~n~l~~~-~~-~---~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~L~l~~n-~l~~~~---- 347 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQLEDI-SP-I---SNLKNLTYLTLYFNN-ISDIS---PVSSLTKLQRLFFYNN-KVSDVS---- 347 (466)
T ss_dssp -GTTCTTCSEEECCSSCCSCC-GG-G---GGCTTCSEEECCSSC-CSCCG---GGGGCTTCCEEECCSS-CCCCCG----
T ss_pred -ccCCCccCeEEcCCCcccCc-hh-h---cCCCCCCEEECcCCc-CCCch---hhccCccCCEeECCCC-ccCCch----
Confidence 34568999999999875543 32 3 789999999999995 33333 3567999999999986 455442
Q ss_pred ccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEecccccccc
Q 002133 823 QLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMI 874 (961)
Q Consensus 823 ~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i 874 (961)
.. ..+++|++|++++| .+..+++ +..+++|+.|++++|+ +..+
T Consensus 348 ~l----~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~-~~~~ 390 (466)
T 1o6v_A 348 SL----ANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA-WTNA 390 (466)
T ss_dssp GG----TTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE-EECC
T ss_pred hh----ccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc-ccCC
Confidence 12 67999999999997 5666655 4889999999999995 4444
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.2e-23 Score=238.18 Aligned_cols=339 Identities=12% Similarity=0.077 Sum_probs=235.5
Q ss_pred hcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEc
Q 002133 510 ARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 589 (961)
...++++|++++|.+..+|....+++|++|++++|.+.+ +| ++.+++|++|++++|.++.+| ++.+++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 467899999999999988855599999999999999885 44 588999999999999999886 899999999999
Q ss_pred cCCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccC
Q 002133 590 DCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (961)
Q Consensus 590 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 669 (961)
++|.+++++ ++.+++|++|++++|.++.+| ++++++|++|++++|..++.++ ++.+++|++|++++|.+..++
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~- 186 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD- 186 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC-
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec-
Confidence 999999864 899999999999999999886 7899999999999987887773 788999999999999776543
Q ss_pred CCccchHhhcCCCCCCEEEccCcc----hhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHH
Q 002133 670 QSNASVVELKQLSSLTILDMHIPD----AQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKK 745 (961)
Q Consensus 670 ~~~~~~~~l~~l~~L~~L~l~~~~----~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~ 745 (961)
+..+++|+.|+++... .+..+++|+.++|++|.+. .+| ..
T Consensus 187 --------l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~-------------------------~ip---~~ 230 (457)
T 3bz5_A 187 --------VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT-------------------------EID---VT 230 (457)
T ss_dssp --------CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCS-------------------------CCC---CT
T ss_pred --------cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCccc-------------------------ccC---cc
Confidence 5677888888886321 2445566667777766652 111 11
Q ss_pred hhccccEEEcccccCcccccccccCCCCccCCc----------EEEeecCCCcccccCCCCCccCCccceeccccccccc
Q 002133 746 LLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLK----------HLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLE 815 (961)
Q Consensus 746 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~----------~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~ 815 (961)
.+++|+.|++++|......+ +.+++|+ .|++++|+.+..++ ...+++|+.|++++|..+.
T Consensus 231 ~l~~L~~L~l~~N~l~~~~~------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELDV------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp TCTTCSEEECCSSCCSCCCC------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCC
T ss_pred ccCCCCEEEeeCCcCCCcCH------HHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccc
Confidence 23667777777765443221 3344444 44444454444432 3457888888888877666
Q ss_pred ccccccccc-ccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCccccccc
Q 002133 816 KVCGSQVQL-TEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNF 894 (961)
Q Consensus 816 ~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l 894 (961)
.++...... ......+++|++|++++| +++.++ +.++++|+.|+++++ .++.++....- ....+.-.....+
T Consensus 301 ~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~N-~l~~l~~L~~L-~l~~n~l~g~~~~ 373 (457)
T 3bz5_A 301 LLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVNA-HIQDFSSVGKI-PALNNNFEAEGQT 373 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCSS-CCCBCTTGGGS-SGGGTSEEEEEEE
T ss_pred eeccCCCcceEechhhcccCCEEECCCC-cccccc----cccCCcCcEEECCCC-CCCCccccccc-cccCCcEEeccee
Confidence 554321100 001245688899998885 677763 478899999999987 44444321110 0001100111344
Q ss_pred ccccceeccccccccccCCC
Q 002133 895 NHLHSLALRRLPQLTSSGFY 914 (961)
Q Consensus 895 ~~L~~L~l~~c~~L~~i~~~ 914 (961)
..|+.+++++..--..+|..
T Consensus 374 ~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 374 ITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EECCCBCCBTTBEEEECCTT
T ss_pred eecCccccccCcEEEEcChh
Confidence 56667777665333355544
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.1e-23 Score=248.94 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=106.3
Q ss_pred hcCCCcEEecCCCCCCCCCC-cc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEE
Q 002133 510 ARKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTL 587 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L 587 (961)
.+.++++|++++|.+..++. .+ ++++|++|++++|.+.+ +++..|.++++|++|++++|.++.+|.. .+++|++|
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHL 126 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEE
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEE
Confidence 45799999999999998875 34 89999999999999985 4445568999999999999999999987 89999999
Q ss_pred EccCCCCCC---CccccCCCCCcEEEeccCcCCccchhhhcCCCc--CEEecCCCC
Q 002133 588 SFDCCHLED---VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRL--KLLDLSNCS 638 (961)
Q Consensus 588 ~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~ 638 (961)
++++|.++. |..++++++|++|++++|.++.. .+..+++| ++|++++|.
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESS
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccc
Confidence 999999887 36899999999999999998853 35555666 999998854
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1e-22 Score=225.44 Aligned_cols=297 Identities=18% Similarity=0.247 Sum_probs=230.1
Q ss_pred CCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCCCcccc
Q 002133 522 RDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVG 601 (961)
Q Consensus 522 ~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~ 601 (961)
..+..++....+++|++|++++|.+. .++. +..+++|++|++++|.++.+|. +..+++|++|++++|.++.++.+.
T Consensus 32 ~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~ 107 (347)
T 4fmz_A 32 ASVTDVVTQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQ 107 (347)
T ss_dssp SCTTSEECHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGT
T ss_pred cccCCcccchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHc
Confidence 33344444448899999999999886 4554 5889999999999999999887 999999999999999999988899
Q ss_pred CCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCC
Q 002133 602 DLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQL 681 (961)
Q Consensus 602 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 681 (961)
.+++|++|++++|.++.+|. +..+++|++|++++|..+..++. +..+++|++|++++|.+..++ .+..+
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~--------~~~~l 176 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT--------PIANL 176 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCG--------GGGGC
T ss_pred CCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCch--------hhccC
Confidence 99999999999999999987 89999999999999877776654 899999999999998766544 25566
Q ss_pred CCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCc
Q 002133 682 SSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGI 761 (961)
Q Consensus 682 ~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 761 (961)
++|+.|+++ +|.+. ..+. ...+++|+.|++++|...
T Consensus 177 ~~L~~L~l~-----------------~n~l~-------------------------~~~~--~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 177 TDLYSLSLN-----------------YNQIE-------------------------DISP--LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp TTCSEEECT-----------------TSCCC-------------------------CCGG--GGGCTTCCEEECCSSCCC
T ss_pred CCCCEEEcc-----------------CCccc-------------------------cccc--ccCCCccceeecccCCCC
Confidence 666666654 33321 0000 123588999999998654
Q ss_pred ccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeec
Q 002133 762 QNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQ 841 (961)
Q Consensus 762 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 841 (961)
...+ + ..+++|+.|++++|. +..++ ....+++|+.|+++++ .++.+. .. ..+++|++|++++
T Consensus 213 ~~~~--~---~~~~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~n-~l~~~~----~~----~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 213 DITP--V---ANMTRLNSLKIGNNK-ITDLS---PLANLSQLTWLEIGTN-QISDIN----AV----KDLTKLKMLNVGS 274 (347)
T ss_dssp CCGG--G---GGCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSS-CCCCCG----GG----TTCTTCCEEECCS
T ss_pred CCch--h---hcCCcCCEEEccCCc-cCCCc---chhcCCCCCEEECCCC-ccCCCh----hH----hcCCCcCEEEccC
Confidence 4332 3 778999999999995 44443 3667899999999985 444442 12 6789999999999
Q ss_pred CCCCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccccccccceeccccccccccCC
Q 002133 842 CHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSGF 913 (961)
Q Consensus 842 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~i~~ 913 (961)
| .++.++ .+..+++|+.|++++|+ +...+ +..+..+++|++|++++|+ ++.++.
T Consensus 275 n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~------------~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 275 N-QISDIS---VLNNLSQLNSLFLNNNQ-LGNED------------MEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp S-CCCCCG---GGGGCTTCSEEECCSSC-CCGGG------------HHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred C-ccCCCh---hhcCCCCCCEEECcCCc-CCCcC------------hhHhhccccCCEEEccCCc-cccccC
Confidence 7 677773 25889999999999995 44332 3456789999999999996 666544
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=9e-23 Score=245.83 Aligned_cols=149 Identities=22% Similarity=0.279 Sum_probs=125.5
Q ss_pred EEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEccCCCC
Q 002133 516 AISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHL 594 (961)
Q Consensus 516 ~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l 594 (961)
..+-++.++..+|..+ -+++++|+|++|.++ .+|+..|.++++|++|+|++|.++.+|+ +|.++++|++|+|++|++
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 3455556778888754 247999999999998 6776667999999999999999998854 699999999999999999
Q ss_pred CC-C-ccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccC-hHHHhcCccCCEEEccCCCCccc
Q 002133 595 ED-V-ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIK-PEVISRLSRLNELYMGNSFTRKV 667 (961)
Q Consensus 595 ~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~ 667 (961)
+. + ..|.++++|++|++++|.++.+|.. ++++++|++|++++ +.+..++ +..++.+++|++|++++|.+..+
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc-CccccCCCchhhccchhhhhhcccCcccccc
Confidence 98 4 5789999999999999999999865 89999999999999 4565442 34488999999999999876543
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=4.9e-23 Score=238.53 Aligned_cols=290 Identities=18% Similarity=0.157 Sum_probs=228.0
Q ss_pred hhcCCCcEEecCCCCCCCCCC-cc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCC
Q 002133 509 AARKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLR 585 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~ 585 (961)
..+.+++.|++++|.+..++. .+ ++++|++|++++|.+.+..|. .|.++++|++|+|++|.++.+|. .|.++++|+
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 346789999999999988754 34 899999999999998854454 46899999999999999998876 479999999
Q ss_pred EEEccCCCCCC--CccccCCCCCcEEEeccCcCCccc-hhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCC
Q 002133 586 TLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLP-EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS 662 (961)
Q Consensus 586 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 662 (961)
+|+|++|.++. +..+.++++|++|++++|.++.++ ..+.++++|++|++++ +.++.+++..+.++++|+.|++++|
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCCcEEeCCCC
Confidence 99999999988 478999999999999999999764 4689999999999999 5788899888999999999999999
Q ss_pred CCccccCCCccchHhhcCCCCCCEEEccCcchh-------ccccccccccccceeEEEecccCCCCCCCccceEEecCCC
Q 002133 663 FTRKVEGQSNASVVELKQLSSLTILDMHIPDAQ-------LLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDN 735 (961)
Q Consensus 663 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-------~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~ 735 (961)
.+..++. ..+..+++|+.|+++..... ....+|+.++|++|.
T Consensus 187 ~i~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~------------------------- 235 (477)
T 2id5_A 187 NINAIRD------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN------------------------- 235 (477)
T ss_dssp CCCEECT------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-------------------------
T ss_pred cCcEeCh------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-------------------------
Confidence 8776653 45778899999999742221 112234444444433
Q ss_pred cccchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccc
Q 002133 736 SIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLE 815 (961)
Q Consensus 736 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~ 815 (961)
...+|......+++|+.|+|++|......+..+ ..+++|+.|+|++|. +..+... ....+++|+.|+++++ .++
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~ 309 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML---HELLRLQEIQLVGGQ-LAVVEPY-AFRGLNYLRVLNVSGN-QLT 309 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC---TTCTTCCEEECCSSC-CSEECTT-TBTTCTTCCEEECCSS-CCS
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhc---cccccCCEEECCCCc-cceECHH-HhcCcccCCEEECCCC-cCc
Confidence 334454444556899999999987655444444 889999999999985 4444332 5677899999999984 666
Q ss_pred cccccccccccCcCcCCCccEEEeecCC
Q 002133 816 KVCGSQVQLTEDNRSFTNLRIINIEQCH 843 (961)
Q Consensus 816 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 843 (961)
.++...+ ..+++|++|++++++
T Consensus 310 ~~~~~~~------~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 310 TLEESVF------HSVGNLETLILDSNP 331 (477)
T ss_dssp CCCGGGB------SCGGGCCEEECCSSC
T ss_pred eeCHhHc------CCCcccCEEEccCCC
Confidence 6644333 568999999999964
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4.5e-23 Score=232.06 Aligned_cols=298 Identities=16% Similarity=0.160 Sum_probs=235.2
Q ss_pred hcCCCcEEecCCCCCCCCCCcc--CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCE
Q 002133 510 ARKNPTAISIPFRDISELPDSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRT 586 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~ 586 (961)
...+++.++++++.+..+|... .+++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3578999999999999999864 8999999999999987 45555569999999999999999977 556899999999
Q ss_pred EEccCCCCCC-Cc-cccCCCCCcEEEeccCcCCccch-hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCC
Q 002133 587 LSFDCCHLED-VA-RVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (961)
Q Consensus 587 L~L~~~~l~~-~~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 663 (961)
|++++|.++. +. .++++++|++|++++|.++.++. .+.++++|++|++++ +.++.++ ++.+++|++|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccccc
Confidence 9999999998 43 36899999999999999998755 489999999999999 5677775 5789999999999986
Q ss_pred CccccCCCccchHhhcCCCCCCEEEccCcch----hccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccc
Q 002133 664 TRKVEGQSNASVVELKQLSSLTILDMHIPDA----QLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYL 739 (961)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~ 739 (961)
+..++ ...+|+.|+++.... ....++|+.++|++|.+. ..
T Consensus 198 l~~~~-----------~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-------------------------~~ 241 (390)
T 3o6n_A 198 LSTLA-----------IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-------------------------DT 241 (390)
T ss_dssp CSEEE-----------CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC-------------------------CC
T ss_pred ccccC-----------CCCcceEEECCCCeeeeccccccccccEEECCCCCCc-------------------------cc
Confidence 65433 345788888863221 112345667777766642 11
Q ss_pred hHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccc
Q 002133 740 GYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCG 819 (961)
Q Consensus 740 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 819 (961)
.++ ..+++|+.|++++|......+..+ ..+++|+.|++++|. ++.++. ....+|+|+.|+++++ .++.++.
T Consensus 242 -~~l-~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~ 312 (390)
T 3o6n_A 242 -AWL-LNYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNR-LVALNL--YGQPIPTLKVLDLSHN-HLLHVER 312 (390)
T ss_dssp -GGG-GGCTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECCSSC-CCEEEC--SSSCCTTCCEEECCSS-CCCCCGG
T ss_pred -HHH-cCCCCccEEECCCCcCCCcChhHc---cccccCCEEECCCCc-CcccCc--ccCCCCCCCEEECCCC-cceecCc
Confidence 112 235899999999998776666666 889999999999984 555554 3467899999999996 5555532
Q ss_pred cccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccc
Q 002133 820 SQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCK 869 (961)
Q Consensus 820 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~ 869 (961)
. . ..+++|++|++++| .++.++ +..+++|+.|++++|+
T Consensus 313 ~---~----~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 313 N---Q----PQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp G---H----HHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred c---c----cccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCC
Confidence 2 1 56899999999997 577774 3678999999999985
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1e-22 Score=242.00 Aligned_cols=298 Identities=16% Similarity=0.153 Sum_probs=234.9
Q ss_pred cCCCcEEecCCCCCCCCCCcc--CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCEE
Q 002133 511 RKNPTAISIPFRDISELPDSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTL 587 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L 587 (961)
..+++.+++.+|.+..+|... ++++|++|++++|.+.+ +++..|+++++|++|+|++|.+..+| ..|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 568999999999999999865 89999999999999884 45445689999999999999999775 457999999999
Q ss_pred EccCCCCCC-Cc-cccCCCCCcEEEeccCcCCccch-hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCC
Q 002133 588 SFDCCHLED-VA-RVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (961)
Q Consensus 588 ~L~~~~l~~-~~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 664 (961)
+|++|.++. |. .|+++++|++|++++|.++.+|. .++++++|++|++++ +.++.++ ++.+++|++|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccCcc
Confidence 999999998 43 46999999999999999997765 589999999999999 5777775 56799999999999866
Q ss_pred ccccCCCccchHhhcCCCCCCEEEccCcch----hccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccch
Q 002133 665 RKVEGQSNASVVELKQLSSLTILDMHIPDA----QLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLG 740 (961)
Q Consensus 665 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~ 740 (961)
..+ ....+|+.|+++.... ....++|+.++|++|.+.. +
T Consensus 205 ~~l-----------~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--------------------------~ 247 (597)
T 3oja_B 205 STL-----------AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--------------------------T 247 (597)
T ss_dssp SEE-----------ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--------------------------C
T ss_pred ccc-----------cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--------------------------C
Confidence 543 3455788888873321 1123466777777776520 1
Q ss_pred HHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceecccccccccccccc
Q 002133 741 YGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGS 820 (961)
Q Consensus 741 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 820 (961)
.++ ..+++|+.|+|++|......|..+ +.+++|+.|+|++|. +..++. ....+|+|+.|+++++ .+..++..
T Consensus 248 ~~l-~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~-l~~l~~--~~~~l~~L~~L~Ls~N-~l~~i~~~ 319 (597)
T 3oja_B 248 AWL-LNYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNR-LVALNL--YGQPIPTLKVLDLSHN-HLLHVERN 319 (597)
T ss_dssp GGG-GGCTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECTTSC-CCEEEC--SSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred hhh-ccCCCCCEEECCCCccCCCCHHHh---cCccCCCEEECCCCC-CCCCCc--ccccCCCCcEEECCCC-CCCccCcc
Confidence 112 235899999999998777667666 889999999999984 555554 4466899999999985 45554322
Q ss_pred ccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEecccc
Q 002133 821 QVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKI 870 (961)
Q Consensus 821 ~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 870 (961)
...+++|++|++++| .+..++ +..+++|+.|++++|+-
T Consensus 320 -------~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 320 -------QPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp -------HHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSCE
T ss_pred -------cccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCCC
Confidence 156899999999997 566664 36789999999999864
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=3.8e-22 Score=227.86 Aligned_cols=295 Identities=19% Similarity=0.173 Sum_probs=215.9
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCCCccccCCCCCcEEEe
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSF 611 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l 611 (961)
++++|++|++++|.+.+ +| . ++.+++|++|++++|.++.+| ++.+++|++|++++|.+++++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 78999999999999885 45 3 589999999999999999987 899999999999999999964 899999999999
Q ss_pred ccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCC-CCccccCCCccchHhhcCCCCCCEEEcc
Q 002133 612 RNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS-FTRKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 612 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
++|.++.+| ++++++|++|++++ +.++.++ ++.+++|++|++++| .++.+ .+..+++|+.|+++
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---------~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKKITKL---------DVTPQTQLTTLDCS 178 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSCCCCC---------CCTTCTTCCEEECC
T ss_pred CCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCccccc---------ccccCCcCCEEECC
Confidence 999999987 89999999999999 5677774 789999999999998 33332 36677888888886
Q ss_pred Ccch----hccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccc
Q 002133 691 IPDA----QLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQ 766 (961)
Q Consensus 691 ~~~~----~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 766 (961)
.... +..+++|+.+++++|.+. .++ ...+++|+.|++++|.... +|
T Consensus 179 ~n~l~~l~l~~l~~L~~L~l~~N~l~-------------------------~~~---l~~l~~L~~L~Ls~N~l~~-ip- 228 (457)
T 3bz5_A 179 FNKITELDVSQNKLLNRLNCDTNNIT-------------------------KLD---LNQNIQLTFLDCSSNKLTE-ID- 228 (457)
T ss_dssp SSCCCCCCCTTCTTCCEEECCSSCCS-------------------------CCC---CTTCTTCSEEECCSSCCSC-CC-
T ss_pred CCccceeccccCCCCCEEECcCCcCC-------------------------eec---cccCCCCCEEECcCCcccc-cC-
Confidence 3211 334455555555555431 111 1234899999999987655 44
Q ss_pred cccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceec----------cccccccccccccccccccCcCcCCCccE
Q 002133 767 ELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLF----------LCNLILLEKVCGSQVQLTEDNRSFTNLRI 836 (961)
Q Consensus 767 ~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~----------l~~~~~L~~~~~~~~~~~~~~~~l~~L~~ 836 (961)
+ +.+++|+.|++++|. ++.++ ...+++|+.|. +++|..+..+ +. +.+++|+.
T Consensus 229 -~---~~l~~L~~L~l~~N~-l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~-----~~----~~l~~L~~ 290 (457)
T 3bz5_A 229 -V---TPLTQLTYFDCSVNP-LTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF-----QA----EGCRKIKE 290 (457)
T ss_dssp -C---TTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE-----EC----TTCTTCCC
T ss_pred -c---cccCCCCEEEeeCCc-CCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCcc-----cc----cccccCCE
Confidence 3 789999999999995 44443 34466665554 4444433333 22 57899999
Q ss_pred EEeecCCCCcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccccccccceecccc
Q 002133 837 INIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRL 905 (961)
Q Consensus 837 L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c 905 (961)
|++++|+.++.+|. ..++|+.|++++|++|+.+.-.... +.. ..+..+++|+.|+++++
T Consensus 291 L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~~L~L~~N~--l~~---l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 291 LDVTHNTQLYLLDC-----QAAGITELDLSQNPKLVYLYLNNTE--LTE---LDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCCEEECTTCC--CSC---CCCTTCTTCSEEECCSS
T ss_pred EECCCCcccceecc-----CCCcceEechhhcccCCEEECCCCc--ccc---cccccCCcCcEEECCCC
Confidence 99999988887753 3456666666666666655322111 111 12577888888888764
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=3.3e-21 Score=219.91 Aligned_cols=316 Identities=18% Similarity=0.154 Sum_probs=144.8
Q ss_pred CCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccC
Q 002133 512 KNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (961)
Q Consensus 512 ~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~ 591 (961)
.+++.|++++|.+..+|.. +++|+.|++++|.+.+ +|. ..++|++|++++|.++.+| .++++++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 3444555555444444432 2444555554444432 221 1134455555555544444 344455555555555
Q ss_pred CCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCC
Q 002133 592 CHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQS 671 (961)
Q Consensus 592 ~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 671 (961)
|.+++++.. ..+|++|++++|.++.+| .++++++|++|++++ +.++.+|.. .++|++|++++|.+..++
T Consensus 163 N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~-N~l~~l~~~----~~~L~~L~l~~n~l~~lp--- 231 (454)
T 1jl5_A 163 NSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN-NSLKKLPDL----PLSLESIVAGNNILEELP--- 231 (454)
T ss_dssp SCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSSCCCC----CTTCCEEECCSSCCSSCC---
T ss_pred CcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCC-CcCCcCCCC----cCcccEEECcCCcCCccc---
Confidence 544442111 124555555555444444 344455555555544 233333321 134455555544433332
Q ss_pred ccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhcccc
Q 002133 672 NASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTE 751 (961)
Q Consensus 672 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~ 751 (961)
.+..+++| +.+++++|.+. ..+ .....++.+.++.+....+|.. +++|+
T Consensus 232 -----~~~~l~~L-----------------~~L~l~~N~l~--~l~---~~~~~L~~L~l~~N~l~~l~~~----~~~L~ 280 (454)
T 1jl5_A 232 -----ELQNLPFL-----------------TTIYADNNLLK--TLP---DLPPSLEALNVRDNYLTDLPEL----PQSLT 280 (454)
T ss_dssp -----CCTTCTTC-----------------CEEECCSSCCS--SCC---SCCTTCCEEECCSSCCSCCCCC----CTTCC
T ss_pred -----ccCCCCCC-----------------CEEECCCCcCC--ccc---ccccccCEEECCCCcccccCcc----cCcCC
Confidence 13344444 44444444432 111 1123445555544433333322 36888
Q ss_pred EEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcC
Q 002133 752 DLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSF 831 (961)
Q Consensus 752 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l 831 (961)
.|++++|.... ++. + .++|+.|++++|. +..++. ..++|+.|++++ +.++.++ ..+
T Consensus 281 ~L~ls~N~l~~-l~~-~-----~~~L~~L~l~~N~-l~~i~~-----~~~~L~~L~Ls~-N~l~~lp----------~~~ 336 (454)
T 1jl5_A 281 FLDVSENIFSG-LSE-L-----PPNLYYLNASSNE-IRSLCD-----LPPSLEELNVSN-NKLIELP----------ALP 336 (454)
T ss_dssp EEECCSSCCSE-ESC-C-----CTTCCEEECCSSC-CSEECC-----CCTTCCEEECCS-SCCSCCC----------CCC
T ss_pred EEECcCCccCc-ccC-c-----CCcCCEEECcCCc-CCcccC-----CcCcCCEEECCC-Ccccccc----------ccC
Confidence 99998876433 221 1 2688999998884 333321 135889999888 3444432 236
Q ss_pred CCccEEEeecCCCCcccCChHHHhhcccccEEeEecccccc--ccccccccCCccCCCcccccccccccceecccccc
Q 002133 832 TNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILR--MIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQ 907 (961)
Q Consensus 832 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~--~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 907 (961)
++|++|++++| +++.+|. .+++|++|++++|+... .+|..-...............+++|++|++++++-
T Consensus 337 ~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 337 PRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp TTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred CcCCEEECCCC-ccccccc-----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 88999999986 6777765 36889999999884332 23211100000000000001237899999998753
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=4.3e-22 Score=227.26 Aligned_cols=323 Identities=19% Similarity=0.146 Sum_probs=155.4
Q ss_pred cCCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCce-------------eEEEecCCCCCCCCc
Q 002133 511 RKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTEL-------------LVLHLTGIHFPSLPL 576 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L-------------~~L~L~~~~~~~lp~ 576 (961)
...++.+.+++|.+..+|..+ ++++|++|++++|.+.+.+|..+ +++++| ++|++++|.++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 346777777777777777666 77777777777777666666554 444443 666666666665554
Q ss_pred cccCCcCCCEEEccCCCCCCCccccCCC--------------------CCcEEEeccCcCCccchhhhcCCCcCEEecCC
Q 002133 577 SLGSLINLRTLSFDCCHLEDVARVGDLA--------------------KLEILSFRNSHIEQLPEQIGNLTRLKLLDLSN 636 (961)
Q Consensus 577 ~~~~l~~L~~L~L~~~~l~~~~~~~~l~--------------------~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 636 (961)
. .++|++|++++|.+++++. .+. +|++|++++|.++.+| .++++++|++|++++
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred C---cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 2 2455555555555555221 124 4555555555444444 344555555555554
Q ss_pred CCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccCcch---hccccccccccccceeEEE
Q 002133 637 CSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIPDA---QLLLEDLISLDLERYRIFI 713 (961)
Q Consensus 637 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~L~~l~L~~~~i~~ 713 (961)
+.++.+|.. .++|++|++++|.+..++ .+..+++|+.|+++.... .....+|+.+++++|.+.
T Consensus 163 -N~l~~lp~~----~~~L~~L~L~~n~l~~l~--------~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 163 -NSLKKLPDL----PPSLEFIAAGNNQLEELP--------ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE- 228 (454)
T ss_dssp -SCCSCCCCC----CTTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-
T ss_pred -CcCcccCCC----cccccEEECcCCcCCcCc--------cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-
Confidence 234444321 234555555554443332 245555566665542211 112234555555555542
Q ss_pred ecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccC
Q 002133 714 GDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIAN 793 (961)
Q Consensus 714 ~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~ 793 (961)
..+. ....+.++.+.++.+....+|. .+++|+.|++++|.... +|. .+++|+.|++++|. +..++.
T Consensus 229 -~lp~-~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~------~~~~L~~L~ls~N~-l~~l~~ 294 (454)
T 1jl5_A 229 -ELPE-LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPE------LPQSLTFLDVSENI-FSGLSE 294 (454)
T ss_dssp -SCCC-CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCC------CCTTCCEEECCSSC-CSEESC
T ss_pred -cccc-cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCc------ccCcCCEEECcCCc-cCcccC
Confidence 2221 2233445555554433333332 22556666666554322 221 13566666666653 333221
Q ss_pred CCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccc
Q 002133 794 SEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRM 873 (961)
Q Consensus 794 ~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~ 873 (961)
..++|+.|+++++ .++.++ ...++|++|++++| +++.+|. .+++|+.|++++| .++.
T Consensus 295 -----~~~~L~~L~l~~N-~l~~i~----------~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~ 351 (454)
T 1jl5_A 295 -----LPPNLYYLNASSN-EIRSLC----------DLPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAE 351 (454)
T ss_dssp -----CCTTCCEEECCSS-CCSEEC----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSC
T ss_pred -----cCCcCCEEECcCC-cCCccc----------CCcCcCCEEECCCC-ccccccc-----cCCcCCEEECCCC-cccc
Confidence 1256666666653 233321 11257888888885 5666653 2578888888888 4555
Q ss_pred cccccccCCccCCCcccccccccccceecccccc
Q 002133 874 IVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQ 907 (961)
Q Consensus 874 i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 907 (961)
++ . .+++|++|++++++-
T Consensus 352 lp-------------~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 352 VP-------------E---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CC-------------C---CCTTCCEEECCSSCC
T ss_pred cc-------------c---hhhhccEEECCCCCC
Confidence 53 1 368899999988743
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.2e-21 Score=215.09 Aligned_cols=289 Identities=16% Similarity=0.188 Sum_probs=177.0
Q ss_pred ceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEe
Q 002133 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSF 611 (961)
Q Consensus 535 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l 611 (961)
+++.++++++.+. .+|..+ .++|++|++++|.+..+ |..+.++++|++|++++|.++. +..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777777777765 566544 35778888888887766 4467788888888888888777 466778888888888
Q ss_pred ccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccC
Q 002133 612 RNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHI 691 (961)
Q Consensus 612 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 691 (961)
++|.++.+|..+. ++|++|++++ +.++.+++..+.++++|++|++++|.+..... ....+..+
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l---------- 172 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF----EPGAFDGL---------- 172 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS----CTTSSCSC----------
T ss_pred CCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccCCC----CcccccCC----------
Confidence 8888887776654 6788888887 56777777667788888888888776542110 00112222
Q ss_pred cchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccCC
Q 002133 692 PDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNG 771 (961)
Q Consensus 692 ~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 771 (961)
+|+.+++++|.+.. +|.. ..++|+.|++++|......+..+
T Consensus 173 --------~L~~L~l~~n~l~~-------------------------l~~~---~~~~L~~L~l~~n~i~~~~~~~l--- 213 (332)
T 2ft3_A 173 --------KLNYLRISEAKLTG-------------------------IPKD---LPETLNELHLDHNKIQAIELEDL--- 213 (332)
T ss_dssp --------CCSCCBCCSSBCSS-------------------------CCSS---SCSSCSCCBCCSSCCCCCCTTSS---
T ss_pred --------ccCEEECcCCCCCc-------------------------cCcc---ccCCCCEEECCCCcCCccCHHHh---
Confidence 33444444444310 0000 11466677777665544433434
Q ss_pred CCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCCh
Q 002133 772 EGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPS 851 (961)
Q Consensus 772 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~ 851 (961)
..+++|+.|++++|. +..++.. ....+++|+.|+++++ .++.++.. ...+++|++|+++++ .++.+++.
T Consensus 214 ~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~~-------l~~l~~L~~L~l~~N-~l~~~~~~ 282 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQ-IRMIENG-SLSFLPTLRELHLDNN-KLSRVPAG-------LPDLKLLQVVYLHTN-NITKVGVN 282 (332)
T ss_dssp TTCTTCSCCBCCSSC-CCCCCTT-GGGGCTTCCEEECCSS-CCCBCCTT-------GGGCTTCCEEECCSS-CCCBCCTT
T ss_pred cCCCCCCEEECCCCc-CCcCChh-HhhCCCCCCEEECCCC-cCeecChh-------hhcCccCCEEECCCC-CCCccChh
Confidence 667777777777763 3333321 3455677777777763 44444221 156778888888875 56666543
Q ss_pred HHHh-----hcccccEEeEecccccc-ccccccccCCccCCCcccccccccccceeccccc
Q 002133 852 FMAE-----KLLQLEELEVTDCKILR-MIVGEETDNHDHENGSMRVVNFNHLHSLALRRLP 906 (961)
Q Consensus 852 ~~~~-----~l~~L~~L~l~~c~~L~-~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 906 (961)
.+.. ..++|+.|++++|+... .+ .+..+..+++|+.|+++++.
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~------------~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEV------------QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSCGGGS------------CGGGGTTBCCSTTEEC----
T ss_pred HccccccccccccccceEeecCccccccc------------Ccccccccchhhhhhccccc
Confidence 3211 14678888888886321 12 13455678888888888775
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.3e-20 Score=206.67 Aligned_cols=290 Identities=16% Similarity=0.199 Sum_probs=133.2
Q ss_pred ceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEe
Q 002133 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSF 611 (961)
Q Consensus 535 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l 611 (961)
+++.++++++.+. .+|..+ .++|++|++++|.++.+|. .++++++|++|++++|.++. |..++++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3444444444443 333322 2345555555555554433 35555555555555555544 244555555555555
Q ss_pred ccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccC
Q 002133 612 RNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHI 691 (961)
Q Consensus 612 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 691 (961)
++|.++.+|..+. ++|++|++++ +.++.+++..+.++++|++|++++|.+.... .....+..+++|+.|+++
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~l~~L~~L~l~- 179 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSG----IENGAFQGMKKLSYIRIA- 179 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGGG----BCTTGGGGCTTCCEEECC-
T ss_pred CCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCccC----cChhhccCCCCcCEEECC-
Confidence 5555555554332 4555555555 3444555544555555555555555432211 001122333333333332
Q ss_pred cchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccCC
Q 002133 692 PDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNG 771 (961)
Q Consensus 692 ~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 771 (961)
+|.+. . +|.. ..++|+.|++++|......+..+
T Consensus 180 ----------------~n~l~--~-----------------------l~~~---~~~~L~~L~l~~n~l~~~~~~~~--- 212 (330)
T 1xku_A 180 ----------------DTNIT--T-----------------------IPQG---LPPSLTELHLDGNKITKVDAASL--- 212 (330)
T ss_dssp ----------------SSCCC--S-----------------------CCSS---CCTTCSEEECTTSCCCEECTGGG---
T ss_pred ----------------CCccc--c-----------------------CCcc---ccccCCEEECCCCcCCccCHHHh---
Confidence 22210 0 0000 01345555555554333333333
Q ss_pred CCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCCh
Q 002133 772 EGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPS 851 (961)
Q Consensus 772 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~ 851 (961)
..+++|+.|++++|. +..++.. ....+++|+.|+++++ .++.++.. ...+++|++|++++| .++.+++.
T Consensus 213 ~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~~-------l~~l~~L~~L~l~~N-~i~~~~~~ 281 (330)
T 1xku_A 213 KGLNNLAKLGLSFNS-ISAVDNG-SLANTPHLRELHLNNN-KLVKVPGG-------LADHKYIQVVYLHNN-NISAIGSN 281 (330)
T ss_dssp TTCTTCCEEECCSSC-CCEECTT-TGGGSTTCCEEECCSS-CCSSCCTT-------TTTCSSCCEEECCSS-CCCCCCTT
T ss_pred cCCCCCCEEECCCCc-CceeChh-hccCCCCCCEEECCCC-cCccCChh-------hccCCCcCEEECCCC-cCCccChh
Confidence 455566666666553 2222221 3344556666666653 33333211 145666777777764 45555443
Q ss_pred HHH-----hhcccccEEeEeccccccccccccccCCccCCCcccccccccccceecccc
Q 002133 852 FMA-----EKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRL 905 (961)
Q Consensus 852 ~~~-----~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c 905 (961)
.+. ...++|+.|++++++....- ..+..+..+++|+.++++++
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~-----------i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWE-----------IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGG-----------SCGGGGTTCCCGGGEEC---
T ss_pred hcCCcccccccccccceEeecCcccccc-----------cCccccccccceeEEEeccc
Confidence 221 12467777777777532111 01334566777778777765
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=8.9e-21 Score=208.00 Aligned_cols=292 Identities=15% Similarity=0.202 Sum_probs=215.8
Q ss_pred CCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccC
Q 002133 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDC 591 (961)
Q Consensus 513 ~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~ 591 (961)
+++.++++++.+..+|... .++|+.|++++|.+. .++...|+++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 6789999999999988754 378999999999987 45555568999999999999999977 88899999999999999
Q ss_pred CCCCC-CccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcc--cChHHHhcCccCCEEEccCCCCccc
Q 002133 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKV--IKPEVISRLSRLNELYMGNSFTRKV 667 (961)
Q Consensus 592 ~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~ 667 (961)
|.++. +..+. ++|++|++++|.++.++.. +.++++|++|++++| .++. +.+..+.++++|++|++++|.+..+
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 99988 44443 7999999999999988764 899999999999995 4542 4455589999999999999977765
Q ss_pred cCCCccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhh
Q 002133 668 EGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLL 747 (961)
Q Consensus 668 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l 747 (961)
+.. + .++|+.++|++|.+.... +..+ ..+
T Consensus 187 ~~~-------~-------------------~~~L~~L~l~~n~l~~~~------------------------~~~~-~~l 215 (330)
T 1xku_A 187 PQG-------L-------------------PPSLTELHLDGNKITKVD------------------------AASL-KGL 215 (330)
T ss_dssp CSS-------C-------------------CTTCSEEECTTSCCCEEC------------------------TGGG-TTC
T ss_pred Ccc-------c-------------------cccCCEEECCCCcCCccC------------------------HHHh-cCC
Confidence 531 1 134445555555542110 1111 234
Q ss_pred ccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccC
Q 002133 748 KTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTED 827 (961)
Q Consensus 748 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 827 (961)
++|+.|++++|......+..+ ..+++|+.|++++|. +..++. ....+++|+.|++++ +.++.++...+.....
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~lp~--~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSL---ANTPHLRELHLNNNK-LVKVPG--GLADHKYIQVVYLHN-NNISAIGSNDFCPPGY 288 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTG---GGSTTCCEEECCSSC-CSSCCT--TTTTCSSCCEEECCS-SCCCCCCTTSSSCSSC
T ss_pred CCCCEEECCCCcCceeChhhc---cCCCCCCEEECCCCc-CccCCh--hhccCCCcCEEECCC-CcCCccChhhcCCccc
Confidence 789999999987665544445 788999999999994 556654 466789999999998 4566665444422111
Q ss_pred cCcCCCccEEEeecCCCCc-ccCChHHHhhcccccEEeEecc
Q 002133 828 NRSFTNLRIINIEQCHRLK-HLFPSFMAEKLLQLEELEVTDC 868 (961)
Q Consensus 828 ~~~l~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~l~~c 868 (961)
....++|+.|++.+++-.. .+++ ..+..+++|+.+++++|
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred ccccccccceEeecCcccccccCc-cccccccceeEEEeccc
Confidence 1246889999999976322 2333 33578899999999887
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.4e-20 Score=205.45 Aligned_cols=150 Identities=26% Similarity=0.400 Sum_probs=129.0
Q ss_pred cCCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEc
Q 002133 511 RKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 589 (961)
...++.|++++|.+..+|..+ ++++|++|++++|.+. .+|..+ +++++|++|++++|.+..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 468899999999999999877 8999999999999988 788665 7899999999999999999999999999999999
Q ss_pred cCCCCCC--Ccccc---------CCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEE
Q 002133 590 DCCHLED--VARVG---------DLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELY 658 (961)
Q Consensus 590 ~~~~l~~--~~~~~---------~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 658 (961)
++|++.+ |..++ ++++|++|++++|.++.+|..++++++|++|++++ +.++.+|+. ++.+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEEE
Confidence 9987555 45444 48999999999999999998899999999999998 567778776 88999999999
Q ss_pred ccCCCC
Q 002133 659 MGNSFT 664 (961)
Q Consensus 659 l~~~~~ 664 (961)
+++|.+
T Consensus 236 Ls~n~~ 241 (328)
T 4fcg_A 236 LRGCTA 241 (328)
T ss_dssp CTTCTT
T ss_pred CcCCcc
Confidence 988743
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=6e-21 Score=207.17 Aligned_cols=245 Identities=18% Similarity=0.212 Sum_probs=171.8
Q ss_pred CCCcEEecCCCCCC---CCCCcc-CCCceeEEEecc-CCCCCCCChhhhhCCCceeEEEecCCCCC-CCCccccCCcCCC
Q 002133 512 KNPTAISIPFRDIS---ELPDSL-QCTRLKLFLLFT-EDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLPLSLGSLINLR 585 (961)
Q Consensus 512 ~~l~~L~l~~~~~~---~lp~~~-~~~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp~~~~~l~~L~ 585 (961)
.++++|++++|.+. .+|..+ ++++|++|++++ |.+.+.+|..+ +++++|++|++++|.+. .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 46788888888886 467666 788888888884 77777777664 77888888888888887 6777888888888
Q ss_pred EEEccCCCCCC--CccccCCCCCcEEEeccCcCC-ccchhhhcCC-CcCEEecCCCCCCc-ccChHHHhcCccCCEEEcc
Q 002133 586 TLSFDCCHLED--VARVGDLAKLEILSFRNSHIE-QLPEQIGNLT-RLKLLDLSNCSKLK-VIKPEVISRLSRLNELYMG 660 (961)
Q Consensus 586 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~-~L~~L~l~~~~~l~-~~~~~~l~~l~~L~~L~l~ 660 (961)
+|++++|.+++ |..+..+++|++|++++|.++ .+|..++.++ +|++|++++| .+. .+|. .+..++ |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~-~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPP-TFANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCG-GGGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCCh-HHhCCc-ccEEECc
Confidence 88888888774 577888888888888888887 7787788887 8888888884 444 4444 377776 8888888
Q ss_pred CCCCccccCCCccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccch
Q 002133 661 NSFTRKVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLG 740 (961)
Q Consensus 661 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~ 740 (961)
+|.+..... ..+..+++| +.++|++|.+... . +
T Consensus 206 ~N~l~~~~~------~~~~~l~~L-----------------~~L~L~~N~l~~~-~-----------------------~ 238 (313)
T 1ogq_A 206 RNMLEGDAS------VLFGSDKNT-----------------QKIHLAKNSLAFD-L-----------------------G 238 (313)
T ss_dssp SSEEEECCG------GGCCTTSCC-----------------SEEECCSSEECCB-G-----------------------G
T ss_pred CCcccCcCC------HHHhcCCCC-----------------CEEECCCCceeee-c-----------------------C
Confidence 875543221 233444444 4444555554200 0 0
Q ss_pred HHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccc
Q 002133 741 YGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLE 815 (961)
Q Consensus 741 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~ 815 (961)
. ...+++|++|++++|.....+|..+ ..+++|+.|++++|.....++. ...+++|+.|++.+.+.+.
T Consensus 239 ~--~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip~---~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 239 K--VGLSKNLNGLDLRNNRIYGTLPQGL---TQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp G--CCCCTTCCEEECCSSCCEECCCGGG---GGCTTCCEEECCSSEEEEECCC---STTGGGSCGGGTCSSSEEE
T ss_pred c--ccccCCCCEEECcCCcccCcCChHH---hcCcCCCEEECcCCcccccCCC---CccccccChHHhcCCCCcc
Confidence 0 0123788899999888776777766 7888999999998865545553 3667888888887765443
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.2e-20 Score=203.75 Aligned_cols=292 Identities=17% Similarity=0.189 Sum_probs=207.7
Q ss_pred CCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccC
Q 002133 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDC 591 (961)
Q Consensus 513 ~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~ 591 (961)
.++.++++++.+..+|... .++|+.|++++|.+. .+++..|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5789999999999998765 478999999999987 45555569999999999999999976 77899999999999999
Q ss_pred CCCCC-CccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcc--cChHHHhcCccCCEEEccCCCCccc
Q 002133 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKV--IKPEVISRLSRLNELYMGNSFTRKV 667 (961)
Q Consensus 592 ~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~ 667 (961)
|.++. |..+. ++|++|++++|.++.+|.. +.++++|++|++++| .++. +++..+..+ +|++|++++|.+..+
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 99988 44444 8999999999999988765 889999999999995 5542 445557777 999999999977665
Q ss_pred cCCCccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhh
Q 002133 668 EGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLL 747 (961)
Q Consensus 668 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l 747 (961)
+.. + .++|+.++|++|.+.... +..+ ..+
T Consensus 188 ~~~-------~-------------------~~~L~~L~l~~n~i~~~~------------------------~~~l-~~l 216 (332)
T 2ft3_A 188 PKD-------L-------------------PETLNELHLDHNKIQAIE------------------------LEDL-LRY 216 (332)
T ss_dssp CSS-------S-------------------CSSCSCCBCCSSCCCCCC------------------------TTSS-TTC
T ss_pred Ccc-------c-------------------cCCCCEEECCCCcCCccC------------------------HHHh-cCC
Confidence 531 1 134555666666542100 0000 123
Q ss_pred ccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccC
Q 002133 748 KTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTED 827 (961)
Q Consensus 748 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 827 (961)
++|+.|++++|......+..+ ..+++|+.|++++|. +..++. ....+++|+.|++++ +.++.++...+.....
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~lp~--~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSL---SFLPTLRELHLDNNK-LSRVPA--GLPDLKLLQVVYLHT-NNITKVGVNDFCPVGF 289 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGG---GGCTTCCEEECCSSC-CCBCCT--TGGGCTTCCEEECCS-SCCCBCCTTSSSCSSC
T ss_pred CCCCEEECCCCcCCcCChhHh---hCCCCCCEEECCCCc-CeecCh--hhhcCccCCEEECCC-CCCCccChhHcccccc
Confidence 677888888776555444344 677888888888873 445554 356678888888887 4566654433321111
Q ss_pred cCcCCCccEEEeecCCCCc-ccCChHHHhhcccccEEeEeccc
Q 002133 828 NRSFTNLRIINIEQCHRLK-HLFPSFMAEKLLQLEELEVTDCK 869 (961)
Q Consensus 828 ~~~l~~L~~L~l~~c~~L~-~l~~~~~~~~l~~L~~L~l~~c~ 869 (961)
...+++|+.|++.+++... .+++ ..+..+++|+.|++++|.
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred ccccccccceEeecCcccccccCc-ccccccchhhhhhccccc
Confidence 1236789999999976432 3433 335789999999999875
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=3e-20 Score=202.83 Aligned_cols=107 Identities=23% Similarity=0.383 Sum_probs=57.1
Q ss_pred CceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC-CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCC
Q 002133 559 TELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNC 637 (961)
Q Consensus 559 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 637 (961)
.++++|+|++|.+..+|..++++++|++|+|++|.++. |..++++++|++|++++|.++.+|..++++++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 45555555555555555555555555555555555554 34455555555555555555555555555555555555555
Q ss_pred CCCcccChHH--------HhcCccCCEEEccCCCCc
Q 002133 638 SKLKVIKPEV--------ISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 638 ~~l~~~~~~~--------l~~l~~L~~L~l~~~~~~ 665 (961)
+.++.+|... +.++++|++|++++|.+.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence 5555554431 122555555555554433
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=3.8e-20 Score=200.81 Aligned_cols=250 Identities=15% Similarity=0.147 Sum_probs=158.3
Q ss_pred CceeEEEeccCCCCC--CCChhhhhCCCceeEEEecC-CCCC-CCCccccCCcCCCEEEccCCCCCC--CccccCCCCCc
Q 002133 534 TRLKLFLLFTEDSSL--QIPNQFFDGMTELLVLHLTG-IHFP-SLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLE 607 (961)
Q Consensus 534 ~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~L~~-~~~~-~lp~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~ 607 (961)
.+++.|++++|.+.+ .+|..+ .++++|++|++++ |.+. .+|..++++++|++|+|++|.+++ |..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 567778888877776 666654 6777777777774 6665 567777777777777777777764 56677777777
Q ss_pred EEEeccCcCC-ccchhhhcCCCcCEEecCCCCCCc-ccChHHHhcCc-cCCEEEccCCCCccccCCCccchHhhcCCCCC
Q 002133 608 ILSFRNSHIE-QLPEQIGNLTRLKLLDLSNCSKLK-VIKPEVISRLS-RLNELYMGNSFTRKVEGQSNASVVELKQLSSL 684 (961)
Q Consensus 608 ~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~-~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L 684 (961)
+|++++|.++ .+|..+.++++|++|++++| .++ .+|.. +..++ +|++|++++|.+....
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~---------------- 190 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLTGKI---------------- 190 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEEEEC----------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeeeccC----------------
Confidence 7777777776 56666777777777777774 444 45444 66666 6777776666332100
Q ss_pred CEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccc
Q 002133 685 TILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNI 764 (961)
Q Consensus 685 ~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 764 (961)
+..+. .++ |+.|++++|......
T Consensus 191 -------~~~~~-------------------------------------------------~l~-L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 191 -------PPTFA-------------------------------------------------NLN-LAFVDLSRNMLEGDA 213 (313)
T ss_dssp -------CGGGG-------------------------------------------------GCC-CSEEECCSSEEEECC
T ss_pred -------ChHHh-------------------------------------------------CCc-ccEEECcCCcccCcC
Confidence 00000 012 555666555544444
Q ss_pred cccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCC
Q 002133 765 VQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHR 844 (961)
Q Consensus 765 ~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 844 (961)
+..+ ..+++|+.|++++|.....++ . . ..+++|++|++++| .
T Consensus 214 ~~~~---~~l~~L~~L~L~~N~l~~~~~--------------------------~----~----~~l~~L~~L~Ls~N-~ 255 (313)
T 1ogq_A 214 SVLF---GSDKNTQKIHLAKNSLAFDLG--------------------------K----V----GLSKNLNGLDLRNN-R 255 (313)
T ss_dssp GGGC---CTTSCCSEEECCSSEECCBGG--------------------------G----C----CCCTTCCEEECCSS-C
T ss_pred CHHH---hcCCCCCEEECCCCceeeecC--------------------------c----c----cccCCCCEEECcCC-c
Confidence 4444 667778888887773211100 0 0 34677888888876 4
Q ss_pred CcccCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccccccccceeccccccccccC
Q 002133 845 LKHLFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSG 912 (961)
Q Consensus 845 L~~l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~i~ 912 (961)
++...+.. +..+++|++|++++|.....+|. ...+++|+.|++.++|.+...|
T Consensus 256 l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip~--------------~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 256 IYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQ--------------GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEECCCGG-GGGCTTCCEEECCSSEEEEECCC--------------STTGGGSCGGGTCSSSEEESTT
T ss_pred ccCcCChH-HhcCcCCCEEECcCCcccccCCC--------------CccccccChHHhcCCCCccCCC
Confidence 54332333 47788888898888855445532 1578889999999988777643
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=2.5e-19 Score=210.47 Aligned_cols=261 Identities=18% Similarity=0.179 Sum_probs=198.8
Q ss_pred cCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEcc
Q 002133 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 590 (961)
..+++.|++++|.+..+|..+. ++|+.|++++|.+. .+|. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 3468999999999999998665 89999999999987 6665 57899999999999999987 78999999999
Q ss_pred CCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCC
Q 002133 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (961)
Q Consensus 591 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 670 (961)
+|.++.++. .+++|+.|++++|.++.+|.. +++|++|++++ +.++.+|. .+++|+.|++++|.+..++
T Consensus 110 ~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~----~~~~L~~L~L~~N~l~~l~-- 177 (622)
T 3g06_A 110 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPA----LPSELCKLWAYNNQLTSLP-- 177 (622)
T ss_dssp SCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSCCC--
T ss_pred CCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC-CcCCCcCC----ccCCCCEEECCCCCCCCCc--
Confidence 999998544 678999999999999999874 58999999999 57777764 3578999999998766544
Q ss_pred CccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccc
Q 002133 671 SNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTT 750 (961)
Q Consensus 671 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L 750 (961)
..+++ |+.++|++|.+.. +| ..+++|
T Consensus 178 --------~~~~~-----------------L~~L~Ls~N~l~~-------------------------l~----~~~~~L 203 (622)
T 3g06_A 178 --------MLPSG-----------------LQELSVSDNQLAS-------------------------LP----TLPSEL 203 (622)
T ss_dssp --------CCCTT-----------------CCEEECCSSCCSC-------------------------CC----CCCTTC
T ss_pred --------ccCCC-----------------CcEEECCCCCCCC-------------------------CC----Cccchh
Confidence 12233 4444455554310 00 012678
Q ss_pred cEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCc
Q 002133 751 EDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRS 830 (961)
Q Consensus 751 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~ 830 (961)
+.|++++|... .++ ..+++|+.|++++| .++.++ ..+++|+.|+++++ .++.++. .
T Consensus 204 ~~L~L~~N~l~-~l~------~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~----------~ 259 (622)
T 3g06_A 204 YKLWAYNNRLT-SLP------ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM----------L 259 (622)
T ss_dssp CEEECCSSCCS-SCC------CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC----------C
T ss_pred hEEECcCCccc-ccC------CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc----------c
Confidence 89999887543 343 23588999999998 455554 34789999999884 5655532 4
Q ss_pred CCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccc
Q 002133 831 FTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRM 873 (961)
Q Consensus 831 l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~ 873 (961)
+++|++|++++| +++.+|.. +.++++|+.|++++|+.-..
T Consensus 260 ~~~L~~L~Ls~N-~L~~lp~~--l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTRLPES--LIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CTTCCEEECCSS-CCCSCCGG--GGGSCTTCEEECCSCCCCHH
T ss_pred cccCcEEeCCCC-CCCcCCHH--HhhccccCEEEecCCCCCCc
Confidence 688999999996 77888643 58899999999999964433
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=205.84 Aligned_cols=277 Identities=20% Similarity=0.179 Sum_probs=182.8
Q ss_pred EEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCCC
Q 002133 516 AISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHL 594 (961)
Q Consensus 516 ~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l 594 (961)
..+.+++.+..+|..+ .++|++|++++|.+. .++...+.++++|++|++++|.++.+ |..++++++|++|++++|.+
T Consensus 35 ~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGL-TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EEECCSTTCSSCCTTC-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCcccccccc-cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 4677788888888754 258888999888887 45555568888899999998888866 55688888899999988888
Q ss_pred CC-C-ccccCCCCCcEEEeccCcCCccch--hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCC
Q 002133 595 ED-V-ARVGDLAKLEILSFRNSHIEQLPE--QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (961)
Q Consensus 595 ~~-~-~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 670 (961)
+. + ..++++++|++|++++|.++.+|. .+.++++|++|++++|+.++.+++..++++++|++|++++|.+..+..
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 191 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP- 191 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-
Confidence 88 3 337888889999998888888876 578888888888888767777777668888888888888876554321
Q ss_pred CccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccc
Q 002133 671 SNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTT 750 (961)
Q Consensus 671 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L 750 (961)
..+..+++|+.| ++++|.+ ..++..+...+++|
T Consensus 192 -----~~l~~l~~L~~L-----------------~l~~n~l-------------------------~~~~~~~~~~~~~L 224 (353)
T 2z80_A 192 -----KSLKSIQNVSHL-----------------ILHMKQH-------------------------ILLLEIFVDVTSSV 224 (353)
T ss_dssp -----TTTTTCSEEEEE-----------------EEECSCS-------------------------TTHHHHHHHHTTTE
T ss_pred -----HHHhccccCCee-----------------cCCCCcc-------------------------ccchhhhhhhcccc
Confidence 233333333333 3333321 12344444456788
Q ss_pred cEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCc
Q 002133 751 EDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRS 830 (961)
Q Consensus 751 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~ 830 (961)
+.|++++|......+..+......+.++.++++++. +.+ ..+..++. ....
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~---------------------l~~-~~l~~l~~-------~l~~ 275 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK---------------------ITD-ESLFQVMK-------LLNQ 275 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCB---------------------CCH-HHHHHHHH-------HHHT
T ss_pred cEEECCCCccccccccccccccccchhhcccccccc---------------------ccC-cchhhhHH-------HHhc
Confidence 888888876544333332222334455555555442 111 11111111 0145
Q ss_pred CCCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccc
Q 002133 831 FTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRM 873 (961)
Q Consensus 831 l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~ 873 (961)
+++|++|++++| +++.+|.. .+..+++|++|++++|+-...
T Consensus 276 l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 276 ISGLLELEFSRN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCBCCC
T ss_pred ccCCCEEECCCC-CCCccCHH-HHhcCCCCCEEEeeCCCccCc
Confidence 778888888886 67777543 336788888888888864433
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2.5e-19 Score=204.67 Aligned_cols=168 Identities=26% Similarity=0.345 Sum_probs=140.5
Q ss_pred CCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCEEEccC
Q 002133 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDC 591 (961)
Q Consensus 513 ~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~ 591 (961)
..+.++..++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|+|++|.+..++ ..|.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 34678888888888887653 78999999999987 444455689999999999999999774 6789999999999999
Q ss_pred CCCCC-C-ccccCCCCCcEEEeccCcCCccch-hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 592 CHLED-V-ARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 592 ~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
|+++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.++.+++..+.++++|++|++++|.+..++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 99988 3 468999999999999999998876 48899999999999989999998888899999999999999777665
Q ss_pred CCCccchHhhcCCCCCCEEEcc
Q 002133 669 GQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
.+..+++|+.|+++
T Consensus 202 --------~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 202 --------NLTPLIKLDELDLS 215 (440)
T ss_dssp --------CCTTCSSCCEEECT
T ss_pred --------ccCCCcccCEEECC
Confidence 35566666666665
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=2.7e-19 Score=205.23 Aligned_cols=168 Identities=24% Similarity=0.313 Sum_probs=141.4
Q ss_pred CCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccC
Q 002133 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDC 591 (961)
Q Consensus 513 ~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~ 591 (961)
..+.++..++.+..+|..+. ++++.|++++|.+.+ ++...|.++++|++|+|++|.+..+ |..|.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888888888887543 689999999999885 4444568999999999999999976 47799999999999999
Q ss_pred CCCCC-C-ccccCCCCCcEEEeccCcCCccch-hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 592 CHLED-V-ARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 592 ~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
|.++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.++.+++..+.++++|++|++++|.+..++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 99988 3 568899999999999999998876 48899999999999999999999888999999999999999777654
Q ss_pred CCCccchHhhcCCCCCCEEEcc
Q 002133 669 GQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
.+..+++|+.|+++
T Consensus 213 --------~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 213 --------NLTPLVGLEELEMS 226 (452)
T ss_dssp --------CCTTCTTCCEEECT
T ss_pred --------cccccccccEEECc
Confidence 35566666666664
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=199.95 Aligned_cols=277 Identities=16% Similarity=0.219 Sum_probs=168.3
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEccCCCCCC--CccccCCCCCcE
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEI 608 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~ 608 (961)
.|+.....+++++.+. .+|..+ .++|++|++++|.++.+|. .+.++++|++|++++|.+++ +..++++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4555556777777776 677654 3578888888888887755 68888888888888888877 356888888888
Q ss_pred EEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccCh-HHHhcCccCCEEEccCC-CCccccCCCccchHhhcCCCCCC
Q 002133 609 LSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKP-EVISRLSRLNELYMGNS-FTRKVEGQSNASVVELKQLSSLT 685 (961)
Q Consensus 609 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~l~~L~ 685 (961)
|++++|.++.+|.. ++++++|++|++++ +.++.+|. ..+.++++|++|++++| .+..++. ..+..+++|+
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~------~~~~~l~~L~ 177 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR------KDFAGLTFLE 177 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT------TTTTTCCEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccccccCH------HHccCCCCCC
Confidence 88888888888776 77888888888888 56777776 45778888888888876 2333321 1222233332
Q ss_pred EEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCccccc
Q 002133 686 ILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIV 765 (961)
Q Consensus 686 ~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 765 (961)
. +++++|.+... .+..+ ..+++|++|++++|.. +.++
T Consensus 178 ~-----------------L~l~~n~l~~~------------------------~~~~l-~~l~~L~~L~l~~n~l-~~~~ 214 (353)
T 2z80_A 178 E-----------------LEIDASDLQSY------------------------EPKSL-KSIQNVSHLILHMKQH-ILLL 214 (353)
T ss_dssp E-----------------EEEEETTCCEE------------------------CTTTT-TTCSEEEEEEEECSCS-TTHH
T ss_pred E-----------------EECCCCCcCcc------------------------CHHHH-hccccCCeecCCCCcc-ccch
Confidence 2 23333222100 00000 1124555555555443 2222
Q ss_pred ccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCC
Q 002133 766 QELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRL 845 (961)
Q Consensus 766 ~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 845 (961)
..+ ...+++|+.|++++|. ++.+....++ .....+.++.++++++ .+
T Consensus 215 ~~~--~~~~~~L~~L~L~~n~---------------------------l~~~~~~~l~---~~~~~~~l~~l~L~~~-~l 261 (353)
T 2z80_A 215 EIF--VDVTSSVECLELRDTD---------------------------LDTFHFSELS---TGETNSLIKKFTFRNV-KI 261 (353)
T ss_dssp HHH--HHHTTTEEEEEEESCB---------------------------CTTCCCC---------CCCCCCEEEEESC-BC
T ss_pred hhh--hhhcccccEEECCCCc---------------------------cccccccccc---cccccchhhccccccc-cc
Confidence 211 1234555555555552 2211111100 0123566778888775 33
Q ss_pred cc-----cCChHHHhhcccccEEeEeccccccccccccccCCccCCCcccccccccccceeccccccccc
Q 002133 846 KH-----LFPSFMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTS 910 (961)
Q Consensus 846 ~~-----l~~~~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~ 910 (961)
.. +| ..+..+++|++|++++| .++.++. ..+..+++|++|+++++|-...
T Consensus 262 ~~~~l~~l~--~~l~~l~~L~~L~Ls~N-~l~~i~~------------~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 262 TDESLFQVM--KLLNQISGLLELEFSRN-QLKSVPD------------GIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CHHHHHHHH--HHHHTCTTCCEEECCSS-CCCCCCT------------TTTTTCTTCCEEECCSSCBCCC
T ss_pred cCcchhhhH--HHHhcccCCCEEECCCC-CCCccCH------------HHHhcCCCCCEEEeeCCCccCc
Confidence 33 32 23578999999999999 5666642 2246889999999999864443
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=4.8e-19 Score=192.00 Aligned_cols=240 Identities=20% Similarity=0.205 Sum_probs=157.5
Q ss_pred cEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC---CccccCCcCCCEEEccC
Q 002133 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL---PLSLGSLINLRTLSFDC 591 (961)
Q Consensus 515 ~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l---p~~~~~l~~L~~L~L~~ 591 (961)
+.++.+.+.+..+|... .++|++|++++|.+. .+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 46777777788887644 367888888888876 67777778888888888888888744 56677788888888888
Q ss_pred CCCCC-CccccCCCCCcEEEeccCcCCccch--hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcc--
Q 002133 592 CHLED-VARVGDLAKLEILSFRNSHIEQLPE--QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRK-- 666 (961)
Q Consensus 592 ~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-- 666 (961)
|.++. +..+..+++|++|++++|.++.++. .+..+++|++|++++ +.+...++..+..+++|++|++++|.+..
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC-CcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 88777 5668888888888888888887764 578888888888888 45665656667888888888888876543
Q ss_pred ccCCCccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHh
Q 002133 667 VEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKL 746 (961)
Q Consensus 667 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~ 746 (961)
++ ..+..+++|+.|++ ++|.+.... +..+ ..
T Consensus 167 ~~-------~~~~~l~~L~~L~L-----------------s~n~l~~~~------------------------~~~~-~~ 197 (306)
T 2z66_A 167 LP-------DIFTELRNLTFLDL-----------------SQCQLEQLS------------------------PTAF-NS 197 (306)
T ss_dssp EC-------SCCTTCTTCCEEEC-----------------TTSCCCEEC------------------------TTTT-TT
T ss_pred ch-------hHHhhCcCCCEEEC-----------------CCCCcCCcC------------------------HHHh-cC
Confidence 22 23444455555444 333331100 0000 12
Q ss_pred hccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCC-ccceeccccc
Q 002133 747 LKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFP-LLQSLFLCNL 811 (961)
Q Consensus 747 l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~-~L~~L~l~~~ 811 (961)
+++|+.|++++|......+..+ ..+++|+.|++++|......+. ....+| +|+.|+++++
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPY---KCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGG---TTCTTCCEEECTTSCCCBCSSS--SCCCCCTTCCEEECTTC
T ss_pred CCCCCEEECCCCccCccChhhc---cCcccCCEeECCCCCCcccCHH--HHHhhhccCCEEEccCC
Confidence 3566667776665443333233 5566777777776643322221 333443 6777777663
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=1.9e-20 Score=223.36 Aligned_cols=354 Identities=13% Similarity=0.049 Sum_probs=179.3
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCc-eeEEEecCCCC-C--CCCccccCCcCCCEEEccCCCCCCC------cccc
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTE-LLVLHLTGIHF-P--SLPLSLGSLINLRTLSFDCCHLEDV------ARVG 601 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~L~~~~~-~--~lp~~~~~l~~L~~L~L~~~~l~~~------~~~~ 601 (961)
.+++|++|++++|.+.+..+..+...++. |++|++++|.. . .++..+..+++|++|+|++|.+++. ..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 46777777777776654444433222334 77777777752 1 2333344677777777777765542 2345
Q ss_pred CCCCCcEEEeccCcCC-----ccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchH
Q 002133 602 DLAKLEILSFRNSHIE-----QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVV 676 (961)
Q Consensus 602 ~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 676 (961)
.+++|++|++++|.++ .++..+.++++|++|++++| .+..++ ..+.++++|++|+++.+... ++ ......
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~-~~~~~~~~L~~L~l~~~~~~-~~--~~~~~~ 264 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELV-GFFKAAANLEEFCGGSLNED-IG--MPEKYM 264 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGH-HHHHHCTTCCEEEECBCCCC-TT--CTTSSS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHH-HHHhhhhHHHhhcccccccc-cc--hHHHHH
Confidence 6677777777777665 34444567777777777774 455554 34677777777777642111 00 011223
Q ss_pred hhcCCCCCCEEEcc------CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccc
Q 002133 677 ELKQLSSLTILDMH------IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTT 750 (961)
Q Consensus 677 ~l~~l~~L~~L~l~------~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L 750 (961)
.+..+++|+.|++. ++.....+++|+.++|++|.+............+.++.+.+...........+...+++|
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 45555666666654 233344556666666666653222111222333445555544110001111122234555
Q ss_pred cEEEccc----------ccCcccc--------------------------cccccCCCCccCCcEEEeec---CCCcccc
Q 002133 751 EDLYLDN----------LNGIQNI--------------------------VQELDNGEGFPRLKHLHVQN---DPKILCI 791 (961)
Q Consensus 751 ~~L~L~~----------~~~~~~~--------------------------~~~~~~~~~l~~L~~L~L~~---~~~l~~i 791 (961)
++|++++ |..++.. +..+ ...+++|+.|++++ |+.++..
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI--GTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH--HHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH--HhhCCCCcEEEEeecCCCccccCc
Confidence 5555553 3333221 1111 01244555555542 2222221
Q ss_pred cCC----CCCccCCccceeccccccc-cccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEe
Q 002133 792 ANS----EGPVIFPLLQSLFLCNLIL-LEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVT 866 (961)
Q Consensus 792 ~~~----~~~~~~~~L~~L~l~~~~~-L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~ 866 (961)
+.. .....+++|+.|++++|.+ +.......+ ...+++|++|++++|. ++......++..+++|++|+|+
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-----~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-----GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-----HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEE
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-----HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeecc
Confidence 100 0122355666666655432 111110000 0236777777777663 4432222345677888888888
Q ss_pred ccccccccccccccCCccCCCcccccccccccceecccccccccc
Q 002133 867 DCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSS 911 (961)
Q Consensus 867 ~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~i 911 (961)
+|+ ++.... +..+..+++|++|+|++|+ ++..
T Consensus 497 ~n~-l~~~~~-----------~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 497 GCC-FSERAI-----------AAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp SCC-CBHHHH-----------HHHHHHCSSCCEEEEESCB-CCTT
T ss_pred CCC-CcHHHH-----------HHHHHhcCccCeeECcCCc-CCHH
Confidence 886 332110 1122467889999999887 5543
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=2.3e-18 Score=196.74 Aligned_cols=242 Identities=19% Similarity=0.233 Sum_probs=153.3
Q ss_pred eeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEec
Q 002133 536 LKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFR 612 (961)
Q Consensus 536 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~ 612 (961)
.+.++..++.+. .+|..+ .+++++|+|++|.+..+ +..|.++++|++|+|++|.++. +..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345555555554 455543 24566666666666654 3456666666666666666655 2456666666666666
Q ss_pred cCcCCccch-hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCC-CccccCCCccchHhhcCCCCCCEEEcc
Q 002133 613 NSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF-TRKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 613 ~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
+|.++.+|. .+..+++|++|++++ +.++.+++..+.++++|++|++++|. +..++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~--------------------- 178 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--------------------- 178 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECT---------------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcceeCc---------------------
Confidence 666666554 255666666666666 44555555555566666666655431 111110
Q ss_pred CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccC
Q 002133 691 IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDN 770 (961)
Q Consensus 691 ~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 770 (961)
.....+++|+.|+|++|... .+| .
T Consensus 179 ---------------------------------------------------~~~~~l~~L~~L~L~~n~l~-~~~----~ 202 (440)
T 3zyj_A 179 ---------------------------------------------------GAFEGLSNLRYLNLAMCNLR-EIP----N 202 (440)
T ss_dssp ---------------------------------------------------TTTTTCSSCCEEECTTSCCS-SCC----C
T ss_pred ---------------------------------------------------chhhcccccCeecCCCCcCc-ccc----c
Confidence 00112367788888777543 343 2
Q ss_pred CCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCC
Q 002133 771 GEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFP 850 (961)
Q Consensus 771 ~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 850 (961)
+..+++|+.|+|++|. +..+... .+..+++|+.|++++ +.++.+....+ ..+++|++|+|++| +++.+++
T Consensus 203 ~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~-n~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~ 272 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNH-LSAIRPG-SFQGLMHLQKLWMIQ-SQIQVIERNAF------DNLQSLVEINLAHN-NLTLLPH 272 (440)
T ss_dssp CTTCSSCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTT-CCCCEECTTSS------TTCTTCCEEECTTS-CCCCCCT
T ss_pred cCCCcccCEEECCCCc-cCccChh-hhccCccCCEEECCC-CceeEEChhhh------cCCCCCCEEECCCC-CCCccCh
Confidence 4789999999999994 5555333 667789999999998 45666644333 57899999999996 7888866
Q ss_pred hHHHhhcccccEEeEecccc
Q 002133 851 SFMAEKLLQLEELEVTDCKI 870 (961)
Q Consensus 851 ~~~~~~l~~L~~L~l~~c~~ 870 (961)
. .+..+++|+.|++++|+-
T Consensus 273 ~-~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 273 D-LFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp T-TTSSCTTCCEEECCSSCE
T ss_pred h-HhccccCCCEEEcCCCCc
Confidence 4 347899999999998864
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=2.2e-18 Score=197.68 Aligned_cols=242 Identities=17% Similarity=0.167 Sum_probs=162.4
Q ss_pred eeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEec
Q 002133 536 LKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFR 612 (961)
Q Consensus 536 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~ 612 (961)
...++..++.+. .+|..+ .++|++|+|++|.++.+ |..|.++++|++|+|++|.++. +..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 455666665554 566543 35677777777777755 5567777777777777777766 3567777777777777
Q ss_pred cCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCC-CCccccCCCccchHhhcCCCCCCEEEcc
Q 002133 613 NSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS-FTRKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 613 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
+|.++.+|.. +.++++|++|++++ +.++.+++..+.++++|++|++++| .+..++. .
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------~-------------- 190 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISE------G-------------- 190 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECT------T--------------
T ss_pred CCcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccCh------h--------------
Confidence 7777766654 66677777777777 4566666655667777777776653 1111110 0
Q ss_pred CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccC
Q 002133 691 IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDN 770 (961)
Q Consensus 691 ~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 770 (961)
....+++|+.|+|++|... .++ .
T Consensus 191 ----------------------------------------------------~~~~l~~L~~L~L~~n~l~-~~~----~ 213 (452)
T 3zyi_A 191 ----------------------------------------------------AFEGLFNLKYLNLGMCNIK-DMP----N 213 (452)
T ss_dssp ----------------------------------------------------TTTTCTTCCEEECTTSCCS-SCC----C
T ss_pred ----------------------------------------------------hccCCCCCCEEECCCCccc-ccc----c
Confidence 0012367778888777543 333 2
Q ss_pred CCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCC
Q 002133 771 GEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFP 850 (961)
Q Consensus 771 ~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 850 (961)
+..+++|+.|+|++|.. ..+... ....+++|+.|++++ +.++.+....+ ..+++|++|++++| +++.+++
T Consensus 214 ~~~l~~L~~L~Ls~N~l-~~~~~~-~~~~l~~L~~L~L~~-n~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~ 283 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHF-PEIRPG-SFHGLSSLKKLWVMN-SQVSLIERNAF------DGLASLVELNLAHN-NLSSLPH 283 (452)
T ss_dssp CTTCTTCCEEECTTSCC-SEECGG-GGTTCTTCCEEECTT-SCCCEECTTTT------TTCTTCCEEECCSS-CCSCCCT
T ss_pred ccccccccEEECcCCcC-cccCcc-cccCccCCCEEEeCC-CcCceECHHHh------cCCCCCCEEECCCC-cCCccCh
Confidence 37899999999999954 444322 567789999999998 45555543333 66899999999996 7888865
Q ss_pred hHHHhhcccccEEeEecccc
Q 002133 851 SFMAEKLLQLEELEVTDCKI 870 (961)
Q Consensus 851 ~~~~~~l~~L~~L~l~~c~~ 870 (961)
. .+..+++|+.|++++|+-
T Consensus 284 ~-~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 284 D-LFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp T-SSTTCTTCCEEECCSSCE
T ss_pred H-HhccccCCCEEEccCCCc
Confidence 4 347889999999998864
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=1.8e-20 Score=216.06 Aligned_cols=333 Identities=15% Similarity=0.068 Sum_probs=171.7
Q ss_pred hcCCCcEEecCCCCCC-----CCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCC----ceeEEEecCCCCC-----CC
Q 002133 510 ARKNPTAISIPFRDIS-----ELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMT----ELLVLHLTGIHFP-----SL 574 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~-----~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~----~L~~L~L~~~~~~-----~l 574 (961)
..+++++|++++|.+. .++..+ .+++|++|++++|.+....+..++..++ +|++|++++|.++ .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 3456677777776664 233333 5667777777776665434444445555 5777777777665 34
Q ss_pred CccccCCcCCCEEEccCCCCCC--Cccc-----cCCCCCcEEEeccCcCCc-----cchhhhcCCCcCEEecCCCCCCcc
Q 002133 575 PLSLGSLINLRTLSFDCCHLED--VARV-----GDLAKLEILSFRNSHIEQ-----LPEQIGNLTRLKLLDLSNCSKLKV 642 (961)
Q Consensus 575 p~~~~~l~~L~~L~L~~~~l~~--~~~~-----~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~ 642 (961)
|..+..+++|++|++++|.+++ +..+ ...++|++|++++|.++. ++..+..+++|++|++++| .++.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~ 184 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINE 184 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-Ccch
Confidence 5666667777777777776654 2222 224567777777776663 3445566677777777764 3443
Q ss_pred cChHHHh-----cCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecc-
Q 002133 643 IKPEVIS-----RLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDV- 716 (961)
Q Consensus 643 ~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~- 716 (961)
.....+. .+++|++|++++|.+..... ......+..+++|+.|+++ +|.+.....
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls-----------------~n~l~~~~~~ 245 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNC--RDLCGIVASKASLRELALG-----------------SNKLGDVGMA 245 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH--HHHHHHHHHCTTCCEEECC-----------------SSBCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHH--HHHHHHHHhCCCccEEecc-----------------CCcCChHHHH
Confidence 3222222 24567777777664432110 0111334455666666655 332210000
Q ss_pred ---cCCCCCCCccceEEecCCCccc-----chHHHHHhhccccEEEcccccCccccccccc--CCCCccCCcEEEeecCC
Q 002133 717 ---WNWSGKYECSRTLKLKLDNSIY-----LGYGIKKLLKTTEDLYLDNLNGIQNIVQELD--NGEGFPRLKHLHVQNDP 786 (961)
Q Consensus 717 ---~~~~~~~~~l~~l~L~~~~~~~-----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~ 786 (961)
..+....+.++.+.++.+.... ++..+. .+++|++|++++|......+..+. .....++|+.|++++|.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 0001112233333333322111 222222 247888888888765332222210 01233688888888885
Q ss_pred CcccccCC---CCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCc-----ccCChHHHhhcc
Q 002133 787 KILCIANS---EGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLK-----HLFPSFMAEKLL 858 (961)
Q Consensus 787 ~l~~i~~~---~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~-----~l~~~~~~~~l~ 858 (961)
. ...... .....+++|+.|+++++ .+.......+.. ......++|++|++++| .++ .++ ..+..++
T Consensus 325 l-~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~-~l~~~~~~L~~L~L~~n-~i~~~~~~~l~--~~l~~~~ 398 (461)
T 1z7x_W 325 F-TAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQ-GLGQPGSVLRVLWLADC-DVSDSSCSSLA--ATLLANH 398 (461)
T ss_dssp C-BGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHH-HHTSTTCCCCEEECTTS-CCCHHHHHHHH--HHHHHCC
T ss_pred C-chHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHH-HHcCCCCceEEEECCCC-CCChhhHHHHH--HHHHhCC
Confidence 2 221100 02334578888888875 343321111100 00012568888888887 455 232 2246678
Q ss_pred cccEEeEeccc
Q 002133 859 QLEELEVTDCK 869 (961)
Q Consensus 859 ~L~~L~l~~c~ 869 (961)
+|++|++++|+
T Consensus 399 ~L~~L~l~~N~ 409 (461)
T 1z7x_W 399 SLRELDLSNNC 409 (461)
T ss_dssp CCCEEECCSSS
T ss_pred CccEEECCCCC
Confidence 88888888884
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=8.9e-21 Score=218.72 Aligned_cols=166 Identities=15% Similarity=0.044 Sum_probs=96.0
Q ss_pred CccceEEecCCCcccc-----hHHHHHhhccccEEEcccccCccc----ccccccCCCCccCCcEEEeecCCCcccccCC
Q 002133 724 ECSRTLKLKLDNSIYL-----GYGIKKLLKTTEDLYLDNLNGIQN----IVQELDNGEGFPRLKHLHVQNDPKILCIANS 794 (961)
Q Consensus 724 ~~l~~l~L~~~~~~~~-----~~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~ 794 (961)
+.++.+.++.+..... ...+...+++|++|++++|..... ++..+ ..+++|++|++++|. +......
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l---~~~~~L~~L~Ls~n~-i~~~~~~ 302 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL---RAKESLKELSLAGNE-LGDEGAR 302 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH---HHCTTCCEEECTTCC-CHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH---hhCCCcceEECCCCC-CchHHHH
Confidence 4566666655432221 111222357899999999865443 34444 567899999999985 3221100
Q ss_pred C----CCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhh----cccccEEeEe
Q 002133 795 E----GPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEK----LLQLEELEVT 866 (961)
Q Consensus 795 ~----~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~----l~~L~~L~l~ 866 (961)
. .....++|+.|++++|. ++......++ .....+++|++|++++| .++......+... .++|++|+++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~--~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCS-FTAACCSHFS--SVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH--HHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHhccCCccceeeEcCCCC-CchHHHHHHH--HHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECC
Confidence 0 11224689999999874 3322111111 01145689999999997 5665433222222 5699999999
Q ss_pred ccccccccccccccCCccCCCcccccccccccceeccccc
Q 002133 867 DCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLP 906 (961)
Q Consensus 867 ~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~ 906 (961)
+|. ++...... .+..+..+++|++|++++|+
T Consensus 379 ~n~-i~~~~~~~--------l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 379 DCD-VSDSSCSS--------LAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TSC-CCHHHHHH--------HHHHHHHCCCCCEEECCSSS
T ss_pred CCC-CChhhHHH--------HHHHHHhCCCccEEECCCCC
Confidence 994 44210000 02345678999999999984
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.3e-18 Score=186.44 Aligned_cols=219 Identities=20% Similarity=0.272 Sum_probs=155.1
Q ss_pred cEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCC
Q 002133 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (961)
Q Consensus 515 ~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 593 (961)
+.++.+.+.+..+|... .++|+.|++++|.+. .++...|.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 66777778888887643 468888888888887 45555568888888888888888866 6778888888888888886
Q ss_pred -CCC--CccccCCCCCcEEEeccCcCCcc-chhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccC
Q 002133 594 -LED--VARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (961)
Q Consensus 594 -l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 669 (961)
++. +..+..+++|++|++++|.++.+ |..+.++++|++|++++ +.++.+++..++.+++|++|++++|.+..++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 766 46788888888888888888876 44578888888888888 56777777767888888888888887665542
Q ss_pred CCccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhcc
Q 002133 670 QSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKT 749 (961)
Q Consensus 670 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~ 749 (961)
..+..+++|+.|+++ +|.+.... +..+ ..+++
T Consensus 171 ------~~~~~l~~L~~L~l~-----------------~n~l~~~~------------------------~~~~-~~l~~ 202 (285)
T 1ozn_A 171 ------RAFRGLHSLDRLLLH-----------------QNRVAHVH------------------------PHAF-RDLGR 202 (285)
T ss_dssp ------TTTTTCTTCCEEECC-----------------SSCCCEEC------------------------TTTT-TTCTT
T ss_pred ------HHhcCccccCEEECC-----------------CCcccccC------------------------HhHc-cCccc
Confidence 234455555555443 33331100 0011 12367
Q ss_pred ccEEEcccccCcccccccccCCCCccCCcEEEeecCCC
Q 002133 750 TEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPK 787 (961)
Q Consensus 750 L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 787 (961)
|+.|++++|......+..+ ..+++|+.|++++|+.
T Consensus 203 L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEAL---APLRALQYLRLNDNPW 237 (285)
T ss_dssp CCEEECCSSCCSCCCHHHH---TTCTTCCEEECCSSCE
T ss_pred ccEeeCCCCcCCcCCHHHc---ccCcccCEEeccCCCc
Confidence 7888888776554333334 6778888888888863
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=1.6e-20 Score=224.05 Aligned_cols=344 Identities=14% Similarity=0.066 Sum_probs=206.7
Q ss_pred CCCcEEecCCCCC---CCCCCcc-CCCceeEEEeccCCCCCCC---ChhhhhCCCceeEEEecCCCCC-----CCCcccc
Q 002133 512 KNPTAISIPFRDI---SELPDSL-QCTRLKLFLLFTEDSSLQI---PNQFFDGMTELLVLHLTGIHFP-----SLPLSLG 579 (961)
Q Consensus 512 ~~l~~L~l~~~~~---~~lp~~~-~~~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~L~~~~~~-----~lp~~~~ 579 (961)
.++++|++++|.. ..++... .+++|++|++++|.+.+.- ...++.++++|++|++++|.++ .++..+.
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 3477777766541 1111112 5677777777777654332 1223456777777777777665 2333455
Q ss_pred CCcCCCEEEccCCCCCC-CccccCCCCCcEEEeccCcC----CccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccC
Q 002133 580 SLINLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHI----EQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRL 654 (961)
Q Consensus 580 ~l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l----~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L 654 (961)
++++|++|++++|.+.+ +..+.++++|++|+++++.. ...+..+..+++|+.|+++++ ....+|. .+..+++|
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~-~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPI-LFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGG-GGGGGGGC
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHH-HHhhcCCC
Confidence 66777777777776666 45666777777777764321 133344666777777777763 3444544 37789999
Q ss_pred CEEEccCCCCccccCCCccchHhhcCCCCCCEEEccC-------cchhccccccccccccc-----------eeEEEecc
Q 002133 655 NELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHI-------PDAQLLLEDLISLDLER-----------YRIFIGDV 716 (961)
Q Consensus 655 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-------~~~~~~~~~L~~l~L~~-----------~~i~~~~~ 716 (961)
++|++++|.+.... ....+..+++|+.|++.. +.....+++|+.++|++ +.+.....
T Consensus 296 ~~L~Ls~~~l~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~ 370 (592)
T 3ogk_B 296 RKLDLLYALLETED-----HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370 (592)
T ss_dssp CEEEETTCCCCHHH-----HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred cEEecCCCcCCHHH-----HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence 99999998633111 113367899999999861 12234567788888873 33321111
Q ss_pred cCCCCCCCccceEEecCCCccc-chHHHHHhhccccEEEccc---ccCccccccc--c-cCCCCccCCcEEEeecCCC-c
Q 002133 717 WNWSGKYECSRTLKLKLDNSIY-LGYGIKKLLKTTEDLYLDN---LNGIQNIVQE--L-DNGEGFPRLKHLHVQNDPK-I 788 (961)
Q Consensus 717 ~~~~~~~~~l~~l~L~~~~~~~-~~~~~~~~l~~L~~L~L~~---~~~~~~~~~~--~-~~~~~l~~L~~L~L~~~~~-l 788 (961)
.......+.++.+.+..+.... ....+...+++|+.|++++ |+.++..|.. + ....++++|+.|++++|.. +
T Consensus 371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 1212234567777774332221 2333445578999999984 4444442211 0 0125689999999987753 2
Q ss_pred ccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEecc
Q 002133 789 LCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDC 868 (961)
Q Consensus 789 ~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 868 (961)
...........+++|+.|++++|. ++...... ....+++|++|+|++|+ ++......+...+++|++|++++|
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~-----~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLME-----FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHH-----HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred cHHHHHHHHHhCccceEeeccCCC-CCHHHHHH-----HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 221111122348999999999864 33321111 11568999999999997 654322345578999999999999
Q ss_pred c
Q 002133 869 K 869 (961)
Q Consensus 869 ~ 869 (961)
+
T Consensus 524 ~ 524 (592)
T 3ogk_B 524 R 524 (592)
T ss_dssp B
T ss_pred c
Confidence 6
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=6.2e-20 Score=219.03 Aligned_cols=353 Identities=14% Similarity=0.083 Sum_probs=184.2
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCC-CCCC--CCccccCCcCCCEEEccCCCCCC--Cccc----cC
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGI-HFPS--LPLSLGSLINLRTLSFDCCHLED--VARV----GD 602 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~-~~~~--lp~~~~~l~~L~~L~L~~~~l~~--~~~~----~~ 602 (961)
.+++|++|++++|.+.+..+..+...+++|++|++++| .++. ++..+.++++|++|+|++|.+++ +..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 56788888888887665555555446788888888887 4442 45555578888888888887655 2222 35
Q ss_pred CCCCcEEEeccCc--CC--ccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhh
Q 002133 603 LAKLEILSFRNSH--IE--QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVEL 678 (961)
Q Consensus 603 l~~L~~L~l~~~~--l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 678 (961)
+++|++|++++|. +. .++..+.++++|++|++++|..++.++. .+.++++|++|+++.+...--..........+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 6688888888875 32 2333345678888888888766666543 47788888888866542110000001112244
Q ss_pred cCCCCCCEEE-cc------CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhcccc
Q 002133 679 KQLSSLTILD-MH------IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTE 751 (961)
Q Consensus 679 ~~l~~L~~L~-l~------~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~ 751 (961)
.++++|+.+. +. ++.....+++|+.++|+++.+............+.++.+.+..+........+...+++|+
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence 5555555552 21 1222224455566666655532111111122333444444443210000111122245555
Q ss_pred EEEccc--------ccCccc--------------------------ccccccCCCCccCCcEEEee-----cCCCccccc
Q 002133 752 DLYLDN--------LNGIQN--------------------------IVQELDNGEGFPRLKHLHVQ-----NDPKILCIA 792 (961)
Q Consensus 752 ~L~L~~--------~~~~~~--------------------------~~~~~~~~~~l~~L~~L~L~-----~~~~l~~i~ 792 (961)
.|++.+ |..++. .+..+ ...+++|+.|+++ +|..++..+
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH--HHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH--HhhCCCcceeEeecccCCCcccccCCc
Confidence 555522 111111 11111 0134555555555 333333211
Q ss_pred CCC----CCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEecc
Q 002133 793 NSE----GPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDC 868 (961)
Q Consensus 793 ~~~----~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c 868 (961)
... ....+++|+.|++++ .++......+ ...+++|++|++++|. ++......+...+++|++|++++|
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l-----~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI-----GTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH-----HHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESC
T ss_pred hhhHHHHHHhhCCCccEEeecC--cccHHHHHHH-----HHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCC
Confidence 100 123345566666543 2222110000 0137788888888874 444322233467899999999999
Q ss_pred ccccccccccccCCccCCCcccccccccccceecccccc
Q 002133 869 KILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQ 907 (961)
Q Consensus 869 ~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 907 (961)
+. +.... ...+..+++|++|++++|+.
T Consensus 492 ~~-~~~~~-----------~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 492 PF-GDKAL-----------LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SC-CHHHH-----------HHTGGGGGGSSEEEEESSCC
T ss_pred CC-cHHHH-----------HHHHHhCCCCCEEeeeCCCC
Confidence 64 22211 01225689999999999976
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.4e-18 Score=184.37 Aligned_cols=195 Identities=22% Similarity=0.318 Sum_probs=158.2
Q ss_pred hhcCCCcEEecCCCCCCCCCCc-c-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCC-CCCC-CccccCCcCC
Q 002133 509 AARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIH-FPSL-PLSLGSLINL 584 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~l-p~~~~~l~~L 584 (961)
..+.++++|++++|.+..++.. + .+++|++|++++|.+.+..| ..+.++++|++|++++|. +..+ |..+..+++|
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 3467999999999999888753 3 89999999999999875444 445899999999999997 8877 7789999999
Q ss_pred CEEEccCCCCCC--CccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccC
Q 002133 585 RTLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (961)
Q Consensus 585 ~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 661 (961)
++|++++|.++. +..+.++++|++|++++|.++.+|.. ++++++|++|++++ +.++.+++..+..+++|++|++++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECCC
Confidence 999999999988 46789999999999999999988765 88999999999999 578888887789999999999999
Q ss_pred CCCccccCCCccchHhhcCCCCCCEEEccCc-------chhccccccccccccceeE
Q 002133 662 SFTRKVEGQSNASVVELKQLSSLTILDMHIP-------DAQLLLEDLISLDLERYRI 711 (961)
Q Consensus 662 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-------~~~~~~~~L~~l~L~~~~i 711 (961)
|.+..+.. ..+..+++|+.|+++.. ..+..+++|+.++|++|.+
T Consensus 187 n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 187 NRVAHVHP------HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SCCCEECT------TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CcccccCH------hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 97765531 45667777777777521 1233444455555555544
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=2.5e-19 Score=194.89 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=75.6
Q ss_pred eeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCEEEccCCCCCCCccccCCCCCcEEEeccC
Q 002133 536 LKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNS 614 (961)
Q Consensus 536 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~ 614 (961)
++.++++.+.+. ..+..++..+++|++|++++|.++.++ ..+..+++|++|+|++|.+++...+..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 334444444443 333445556667777777777776553 456777777777777777666434677777777777777
Q ss_pred cCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccc
Q 002133 615 HIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKV 667 (961)
Q Consensus 615 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 667 (961)
.++.+|. +++|++|++++ +.++.+++. .+++|++|++++|.+..+
T Consensus 91 ~l~~l~~----~~~L~~L~l~~-n~l~~~~~~---~~~~L~~L~l~~N~l~~~ 135 (317)
T 3o53_A 91 YVQELLV----GPSIETLHAAN-NNISRVSCS---RGQGKKNIYLANNKITML 135 (317)
T ss_dssp EEEEEEE----CTTCCEEECCS-SCCSEEEEC---CCSSCEEEECCSSCCCSG
T ss_pred ccccccC----CCCcCEEECCC-CccCCcCcc---ccCCCCEEECCCCCCCCc
Confidence 7666552 36777777777 455555432 356677777776655443
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=3.8e-19 Score=193.52 Aligned_cols=239 Identities=17% Similarity=0.181 Sum_probs=118.5
Q ss_pred CCcEEecCCCCCCCCCC-cc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEcc
Q 002133 513 NPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (961)
Q Consensus 513 ~l~~L~l~~~~~~~lp~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 590 (961)
++++|++++|.+..++. .+ ++++|++|++++|.+.+..+ +..+++|++|++++|.++.+|. +++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccC----CCCcCEEECC
Confidence 45555555555544442 12 45555555555555443222 3455555555555555443331 2455555555
Q ss_pred CCCCCCCccccCCCCCcEEEeccCcCCccch-hhhcCCCcCEEecCCCCCCcccChHHH-hcCccCCEEEccCCCCcccc
Q 002133 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVI-SRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 591 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~ 668 (961)
+|.+++... ..+++|++|++++|.++.++. .++.+++|++|++++ +.++.+++..+ ..+++|++|++++|.+..++
T Consensus 108 ~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 555544211 123445555555555554433 344455555555555 23333333222 24555555555555433332
Q ss_pred CCCccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhc
Q 002133 669 GQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLK 748 (961)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~ 748 (961)
+ . ..+++|+.++|++|.+. .++..+ ..++
T Consensus 186 ~--------~-----------------~~l~~L~~L~Ls~N~l~-------------------------~l~~~~-~~l~ 214 (317)
T 3o53_A 186 G--------Q-----------------VVFAKLKTLDLSSNKLA-------------------------FMGPEF-QSAA 214 (317)
T ss_dssp C--------C-----------------CCCTTCCEEECCSSCCC-------------------------EECGGG-GGGT
T ss_pred c--------c-----------------cccccCCEEECCCCcCC-------------------------cchhhh-cccC
Confidence 1 0 11233344444444431 222222 2347
Q ss_pred cccEEEcccccCcccccccccCCCCccCCcEEEeecCCCc-ccccCCCCCccCCccceeccccccccccc
Q 002133 749 TTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKI-LCIANSEGPVIFPLLQSLFLCNLILLEKV 817 (961)
Q Consensus 749 ~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~i~~~~~~~~~~~L~~L~l~~~~~L~~~ 817 (961)
+|+.|++++|... .+|..+ ..+++|+.|++++|+.. ..++. ....+++|+.|++.++..++..
T Consensus 215 ~L~~L~L~~N~l~-~l~~~~---~~l~~L~~L~l~~N~~~~~~~~~--~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 215 GVTWISLRNNKLV-LIEKAL---RFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TCSEEECTTSCCC-EECTTC---CCCTTCCEEECTTCCCBHHHHHH--HHHTCHHHHHHHHHHHHHHHSS
T ss_pred cccEEECcCCccc-chhhHh---hcCCCCCEEEccCCCccCcCHHH--HHhccccceEEECCCchhccCC
Confidence 8888888887544 455555 67788888888888644 22222 3445677777777766655543
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=5.8e-18 Score=183.39 Aligned_cols=243 Identities=19% Similarity=0.158 Sum_probs=179.1
Q ss_pred eEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCcc-ccCCcCCCEEEccCCCCCC----CccccCCCCCcEEEe
Q 002133 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLSFDCCHLED----VARVGDLAKLEILSF 611 (961)
Q Consensus 537 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~l 611 (961)
+.++++++.+. .+|..+ .++|++|++++|.++.+|.. +.++++|++|++++|.++. +..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46777777776 677654 46899999999999998765 7899999999999999875 356778999999999
Q ss_pred ccCcCCccchhhhcCCCcCEEecCCCCCCcccCh-HHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEcc
Q 002133 612 RNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKP-EVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 612 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
++|.++.+|..+..+++|++|++++ +.++.+++ ..+..+++|++|++++|.+..... ..+..+++|+.|++
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l- 157 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------GIFNGLSSLEVLKM- 157 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSCCEECST------TTTTTCTTCCEEEC-
T ss_pred CCCccccChhhcCCCCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCcCCccch------hhcccCcCCCEEEC-
Confidence 9999999998899999999999999 56777765 458899999999999987654331 23445555555544
Q ss_pred CcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccC
Q 002133 691 IPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDN 770 (961)
Q Consensus 691 ~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 770 (961)
++|.+.....+. .+ ..+++|+.|++++|......+..+
T Consensus 158 ----------------~~n~l~~~~~~~-----------------------~~-~~l~~L~~L~Ls~n~l~~~~~~~~-- 195 (306)
T 2z66_A 158 ----------------AGNSFQENFLPD-----------------------IF-TELRNLTFLDLSQCQLEQLSPTAF-- 195 (306)
T ss_dssp ----------------TTCEEGGGEECS-----------------------CC-TTCTTCCEEECTTSCCCEECTTTT--
T ss_pred ----------------CCCccccccchh-----------------------HH-hhCcCCCEEECCCCCcCCcCHHHh--
Confidence 444431000000 01 124789999999987766556555
Q ss_pred CCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcC-CCccEEEeecCC
Q 002133 771 GEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSF-TNLRIINIEQCH 843 (961)
Q Consensus 771 ~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~ 843 (961)
..+++|+.|++++|. +..++.. ....+++|+.|+++++ .+.......+ ..+ ++|++|++++++
T Consensus 196 -~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~------~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 196 -NSLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDYSLN-HIMTSKKQEL------QHFPSSLAFLNLTQND 259 (306)
T ss_dssp -TTCTTCCEEECTTSC-CSBCCSG-GGTTCTTCCEEECTTS-CCCBCSSSSC------CCCCTTCCEEECTTCC
T ss_pred -cCCCCCCEEECCCCc-cCccChh-hccCcccCCEeECCCC-CCcccCHHHH------HhhhccCCEEEccCCC
Confidence 789999999999995 4444332 4567899999999985 4444322222 456 499999999974
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=5.9e-17 Score=190.32 Aligned_cols=232 Identities=18% Similarity=0.110 Sum_probs=166.5
Q ss_pred cCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEcc
Q 002133 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 590 (961)
+.+++.|++++|.+..+|. .+++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC
T ss_pred CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC
Confidence 4689999999999999988 6899999999999987 5765 68999999999999999987 67899999999
Q ss_pred CCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCC
Q 002133 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (961)
Q Consensus 591 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 670 (961)
+|+++.++. .+++|++|++++|.++.+|. .+.+|+.|++++ +.++.+| ..+++|+.|++++|.+..++.
T Consensus 130 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~- 198 (622)
T 3g06_A 130 GNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQELSVSDNQLASLPT- 198 (622)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCEEECCSSCCSCCCC-
T ss_pred CCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcEEECCCCCCCCCCC-
Confidence 999998433 25899999999999999885 457899999999 6788887 457899999999998776653
Q ss_pred CccchHhhcCCCCCCEEEccCc---chhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhh
Q 002133 671 SNASVVELKQLSSLTILDMHIP---DAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLL 747 (961)
Q Consensus 671 ~~~~~~~l~~l~~L~~L~l~~~---~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l 747 (961)
.+++|+.|+++.. .....+++|+.++|++|.+. .+| ..+
T Consensus 199 ---------~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~-------------------------~lp----~~l 240 (622)
T 3g06_A 199 ---------LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-------------------------SLP----VLP 240 (622)
T ss_dssp ---------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-------------------------CCC----CCC
T ss_pred ---------ccchhhEEECcCCcccccCCCCCCCCEEEccCCccC-------------------------cCC----CCC
Confidence 2356777776522 11122355666666666542 111 123
Q ss_pred ccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccc
Q 002133 748 KTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNL 811 (961)
Q Consensus 748 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~ 811 (961)
++|+.|+|++|.. +.+|. .+++|+.|+|++| .++.++. ....+++|+.|+++++
T Consensus 241 ~~L~~L~Ls~N~L-~~lp~------~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 241 SELKELMVSGNRL-TSLPM------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGN 294 (622)
T ss_dssp TTCCEEECCSSCC-SCCCC------CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSC
T ss_pred CcCcEEECCCCCC-CcCCc------ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCC
Confidence 5566666666533 23332 3456666666665 3334432 3445566666666653
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=6.7e-17 Score=172.11 Aligned_cols=220 Identities=21% Similarity=0.266 Sum_probs=154.3
Q ss_pred EEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCEEEccCCCC
Q 002133 516 AISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHL 594 (961)
Q Consensus 516 ~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l 594 (961)
.+......+..+|..+. ++|++|++++|.+. .++...|.++++|++|++++|.+..++ ..+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34455566677776442 57899999999887 455545688999999999999988775 4688899999999999998
Q ss_pred CC--CccccCCCCCcEEEeccCcCCccch-hhhcCCCcCEEecCCCCCCcccC-hHHHhcCccCCEEEccCCCCccccCC
Q 002133 595 ED--VARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIK-PEVISRLSRLNELYMGNSFTRKVEGQ 670 (961)
Q Consensus 595 ~~--~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~ 670 (961)
+. +..+.++++|++|++++|.++.++. .++++++|++|++++ +.++.++ +..++.+++|++|++++|.+..++.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~- 166 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC- 166 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchhhccCCCCCEEECCCCCCCcCCH-
Confidence 87 3678899999999999998887766 588899999999998 5666532 3448899999999999987665542
Q ss_pred CccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccc
Q 002133 671 SNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTT 750 (961)
Q Consensus 671 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L 750 (961)
..+..+..++.|.. .+++++|.+.... ..... ..+|
T Consensus 167 --~~~~~l~~L~~l~l----------------~L~ls~n~l~~~~-------------------------~~~~~-~~~L 202 (276)
T 2z62_A 167 --TDLRVLHQMPLLNL----------------SLDLSLNPMNFIQ-------------------------PGAFK-EIRL 202 (276)
T ss_dssp --GGGHHHHTCTTCCE----------------EEECCSSCCCEEC-------------------------TTSSC-SCCE
T ss_pred --HHhhhhhhccccce----------------eeecCCCcccccC-------------------------ccccC-CCcc
Confidence 23334444443331 2344444432110 00001 1378
Q ss_pred cEEEcccccCcccccccccCCCCccCCcEEEeecCC
Q 002133 751 EDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDP 786 (961)
Q Consensus 751 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 786 (961)
+.|++++|.... ++... +..+++|+.|++++|+
T Consensus 203 ~~L~L~~n~l~~-~~~~~--~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 203 KELALDTNQLKS-VPDGI--FDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEECCSSCCSC-CCTTT--TTTCCSCCEEECCSSC
T ss_pred cEEECCCCceee-cCHhH--hcccccccEEEccCCc
Confidence 889998887543 44321 3778999999999986
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=9.3e-17 Score=170.24 Aligned_cols=190 Identities=24% Similarity=0.357 Sum_probs=120.9
Q ss_pred CCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCcc-ccCCcCCCEEEccC
Q 002133 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLSFDC 591 (961)
Q Consensus 513 ~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L~L~~ 591 (961)
..+.++++++.+..+|..+. ++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45667777777776665432 56777777777765 44444456777777777777777766544 46677777777777
Q ss_pred CCCCC-C-ccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 592 CHLED-V-ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 592 ~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+|+..+..+++|++|++++|.+..++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77766 2 4566777777777777777766543 56777777777777 4566666665667777777777777665554
Q ss_pred CCCccchHhhcCCCCCCEEEccCc-------chhccccccccccccceeE
Q 002133 669 GQSNASVVELKQLSSLTILDMHIP-------DAQLLLEDLISLDLERYRI 711 (961)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~~~-------~~~~~~~~L~~l~L~~~~i 711 (961)
. ..+..+++|+.|+++.. ..+..+++|+.++|++|.+
T Consensus 174 ~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 E------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp T------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred h------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 2 23555666666666421 1233445555556665553
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=5.4e-17 Score=173.53 Aligned_cols=191 Identities=20% Similarity=0.223 Sum_probs=144.5
Q ss_pred cCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEcc
Q 002133 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 590 (961)
..+++.++++++.+..+|..+. ++++.|++++|.+.+ ++...|.++++|++|++++|.++.+|.. +.+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 4567888888888888886553 678888888888874 4444568888888999988888877654 788888889988
Q ss_pred CCCCCC-CccccCCCCCcEEEeccCcCCccch-hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 591 CCHLED-VARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 591 ~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
+|.++. |..+..+++|++|++++|.++.+|. .+.++++|++|++++ +.++.+|+..+..+++|++|++++|.+..++
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 888887 5677888888888888888888864 478888888888888 5777888877788888888888888777666
Q ss_pred CCCccchHhhcCCCCCCEEEcc------CcchhccccccccccccceeE
Q 002133 669 GQSNASVVELKQLSSLTILDMH------IPDAQLLLEDLISLDLERYRI 711 (961)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~------~~~~~~~~~~L~~l~L~~~~i 711 (961)
. ..+..+++|+.|+++ ++........|+.++|.+|.+
T Consensus 165 ~------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 165 A------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp T------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred H------HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 3 345667777777775 333344444555556655553
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=1.2e-18 Score=188.96 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=88.9
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCC--CCCcccc-------CCcCCCEEEccCCCCCC--Cccc
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP--SLPLSLG-------SLINLRTLSFDCCHLED--VARV 600 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~lp~~~~-------~l~~L~~L~L~~~~l~~--~~~~ 600 (961)
..++|+.|++++|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|+|++|.+++ |..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 445677777777777 566655433 777777777774 3555554 67778888888877765 4444
Q ss_pred --cCCCCCcEEEeccCcCCccchhhhcC-----CCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCC
Q 002133 601 --GDLAKLEILSFRNSHIEQLPEQIGNL-----TRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (961)
Q Consensus 601 --~~l~~L~~L~l~~~~l~~lp~~~~~l-----~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 664 (961)
+.+++|++|++++|.++.+|..++.+ ++|++|++++ +.++.+++..++++++|++|++++|.+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCc
Confidence 77778888888888777777666666 7788888877 466677666677788888888877753
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.1e-16 Score=169.61 Aligned_cols=181 Identities=24% Similarity=0.393 Sum_probs=157.2
Q ss_pred hcCCCcEEecCCCCCCCCCCc-c-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCE
Q 002133 510 ARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRT 586 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~ 586 (961)
.+.++++|++++|.+..++.. + ++++|++|++++|.+. .+|..+|.++++|++|++++|.+..+|. .+..+++|++
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 456899999999999988863 3 8999999999999987 6787888999999999999999998865 5789999999
Q ss_pred EEccCCCCCC--CccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCC
Q 002133 587 LSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (961)
Q Consensus 587 L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 663 (961)
|++++|.++. +..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCCc
Confidence 9999999998 35689999999999999999999876 78999999999999 67888888778999999999999998
Q ss_pred CccccCCCccchHhhcCCCCCCEEEccCcchhccc
Q 002133 664 TRKVEGQSNASVVELKQLSSLTILDMHIPDAQLLL 698 (961)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 698 (961)
+..++. ..+..+++|+.|+++.......+
T Consensus 193 l~~~~~------~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 193 LKRVPE------GAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CSCCCT------TTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcCCH------HHhccccCCCEEEecCCCeeCCC
Confidence 877663 34678899999999855443333
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=6.5e-17 Score=171.58 Aligned_cols=193 Identities=22% Similarity=0.242 Sum_probs=165.0
Q ss_pred hhcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEE
Q 002133 509 AARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTL 587 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L 587 (961)
...++++.|.+.+|.+..++....+++|++|++++|.+.+ ++ .+.++++|++|++++|.++.+|. .++.+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3467899999999999988876699999999999999875 33 35899999999999999998755 47999999999
Q ss_pred EccCCCCCC-C-ccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCC
Q 002133 588 SFDCCHLED-V-ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (961)
Q Consensus 588 ~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 664 (961)
++++|+++. + ..++.+++|++|++++|.++.+|.. ++++++|++|++++ +.++.+++..++.+++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCCcC
Confidence 999999998 3 4589999999999999999988765 68999999999999 578888888789999999999999987
Q ss_pred ccccCCCccchHhhcCCCCCCEEEccCcchhccccccccccccceeE
Q 002133 665 RKVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRI 711 (961)
Q Consensus 665 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i 711 (961)
..++. ..+..+++|+.|+++.....+.+++++.+++..|.+
T Consensus 194 ~~~~~------~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 194 KSVPD------GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH 234 (272)
T ss_dssp SCCCT------TTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred CccCH------HHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhC
Confidence 76653 346788999999998766667777787777776654
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.8e-16 Score=171.20 Aligned_cols=187 Identities=18% Similarity=0.282 Sum_probs=160.2
Q ss_pred hcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEc
Q 002133 510 ARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 589 (961)
..+++++|++++|.+..++....+++|+.|++++|.+.. ++. +.++++|++|++++|.+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~-~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC-Chh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 356899999999999998865589999999999999874 444 689999999999999999886 5899999999999
Q ss_pred cCCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccC
Q 002133 590 DCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (961)
Q Consensus 590 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 669 (961)
++|.+++++.+..+++|++|++++|.++.+|. ++.+++|++|++++ +.++.+++ +..+++|++|++++|.+..++
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~- 189 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKISDIS- 189 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCCCG-
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh--hcCCCCCCEEECCCCccCcCh-
Confidence 99999997779999999999999999998886 89999999999999 57787766 889999999999999877655
Q ss_pred CCccchHhhcCCCCCCEEEccCc-----chhccccccccccccceeEE
Q 002133 670 QSNASVVELKQLSSLTILDMHIP-----DAQLLLEDLISLDLERYRIF 712 (961)
Q Consensus 670 ~~~~~~~~l~~l~~L~~L~l~~~-----~~~~~~~~L~~l~L~~~~i~ 712 (961)
.+..+++|+.|+++.. ..+..+++|+.++|++|.+.
T Consensus 190 -------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 190 -------PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -------GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred -------hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 2778889999998722 13556778888888888874
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=3.4e-17 Score=170.28 Aligned_cols=144 Identities=15% Similarity=0.232 Sum_probs=114.0
Q ss_pred CCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCC-CCCCCc-cccCCcCCCEEEccC-CCCCC-
Q 002133 521 FRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIH-FPSLPL-SLGSLINLRTLSFDC-CHLED- 596 (961)
Q Consensus 521 ~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~lp~-~~~~l~~L~~L~L~~-~~l~~- 596 (961)
++.+..+|. -.++|+.|++++|.+. .+|...|.++++|++|++++|. ++.+|. .|.++++|++|++++ |.++.
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC--CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 334677776 3347889999998887 5666566889999999999996 887754 688899999999988 78887
Q ss_pred -CccccCCCCCcEEEeccCcCCccchhhhcCCCcC---EEecCCCCCCcccChHHHhcCccCC-EEEccCCCCcccc
Q 002133 597 -VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLK---LLDLSNCSKLKVIKPEVISRLSRLN-ELYMGNSFTRKVE 668 (961)
Q Consensus 597 -~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~---~L~l~~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~ 668 (961)
+..+.++++|++|++++|.++.+|. +..+++|+ +|++++|..++.+++..+..+++|+ +|++++|.+..++
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 3578888999999999998888887 77888887 8999885478888877788888888 8888887555443
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=2.7e-18 Score=186.29 Aligned_cols=151 Identities=19% Similarity=0.243 Sum_probs=106.0
Q ss_pred CCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCCC-CCCCChhhh------hCCCceeEEEecCCCCC-CCCccc--cC
Q 002133 512 KNPTAISIPFRDISELPDSL-QCTRLKLFLLFTEDS-SLQIPNQFF------DGMTELLVLHLTGIHFP-SLPLSL--GS 580 (961)
Q Consensus 512 ~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~-~~~~~~~~~------~~l~~L~~L~L~~~~~~-~lp~~~--~~ 580 (961)
.+++.+++++|.+ .+|..+ .. |+.|++++|.+ ...+|..+. .++++|++|++++|.++ .+|..+ +.
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4567777777777 666544 22 77777877776 334555431 15788888888888887 567765 78
Q ss_pred CcCCCEEEccCCCCCC-CccccCC-----CCCcEEEeccCcCCccc-hhhhcCCCcCEEecCCCCCCcc--cChHHH--h
Q 002133 581 LINLRTLSFDCCHLED-VARVGDL-----AKLEILSFRNSHIEQLP-EQIGNLTRLKLLDLSNCSKLKV--IKPEVI--S 649 (961)
Q Consensus 581 l~~L~~L~L~~~~l~~-~~~~~~l-----~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~--~~~~~l--~ 649 (961)
+++|++|+|++|.+++ |..++.+ ++|++|++++|.++.+| ..++++++|++|++++|...+. +++. + +
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA-LCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTT
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH-HHhc
Confidence 8888888888888777 5556665 78888888888888776 5678888888888888543332 1222 3 6
Q ss_pred cCccCCEEEccCCCCcc
Q 002133 650 RLSRLNELYMGNSFTRK 666 (961)
Q Consensus 650 ~l~~L~~L~l~~~~~~~ 666 (961)
.+++|++|++++|.+..
T Consensus 199 ~l~~L~~L~L~~N~l~~ 215 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMET 215 (312)
T ss_dssp SCTTCCEEECTTSCCCC
T ss_pred cCCCCCEEECCCCcCcc
Confidence 78888888888886653
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=1.5e-17 Score=191.69 Aligned_cols=233 Identities=17% Similarity=0.172 Sum_probs=137.6
Q ss_pred CCcEEecCCCCCCCCCC-cc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEcc
Q 002133 513 NPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (961)
Q Consensus 513 ~l~~L~l~~~~~~~lp~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 590 (961)
+++.|++++|.+..+++ .+ .+++|++|++++|.+.+..| +..+++|++|+|++|.++.+|. .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 56777777777666553 23 66777777777776654333 4666777777777776665543 2667777777
Q ss_pred CCCCCCCccccCCCCCcEEEeccCcCCcc-chhhhcCCCcCEEecCCCCCCcccChHHHh-cCccCCEEEccCCCCcccc
Q 002133 591 CCHLEDVARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVIS-RLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 591 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~ 668 (961)
+|.++.... ..+++|++|++++|.++.+ |..++++++|++|++++ +.++.+++..+. .+++|++|++++|.+..++
T Consensus 108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 776666221 2356677777777766655 33466667777777776 344443333343 5667777777766554432
Q ss_pred CCCccchHhhcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhc
Q 002133 669 GQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLK 748 (961)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~ 748 (961)
+ ... +++|+.++|++|.+. .+|..+ ..++
T Consensus 186 ~--------~~~-----------------l~~L~~L~Ls~N~l~-------------------------~~~~~~-~~l~ 214 (487)
T 3oja_A 186 G--------QVV-----------------FAKLKTLDLSSNKLA-------------------------FMGPEF-QSAA 214 (487)
T ss_dssp C--------CCC-----------------CTTCCEEECCSSCCC-------------------------EECGGG-GGGT
T ss_pred c--------ccc-----------------CCCCCEEECCCCCCC-------------------------CCCHhH-cCCC
Confidence 1 112 333444444454432 122222 2347
Q ss_pred cccEEEcccccCcccccccccCCCCccCCcEEEeecCCCc-ccccCCCCCccCCccceeccccc
Q 002133 749 TTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKI-LCIANSEGPVIFPLLQSLFLCNL 811 (961)
Q Consensus 749 ~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~i~~~~~~~~~~~L~~L~l~~~ 811 (961)
+|+.|+|++|... .+|..+ ..+++|+.|++++|+.. ..++. ....++.|+.|.+..+
T Consensus 215 ~L~~L~Ls~N~l~-~lp~~l---~~l~~L~~L~l~~N~l~c~~~~~--~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 215 GVTWISLRNNKLV-LIEKAL---RFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQTV 272 (487)
T ss_dssp TCSEEECTTSCCC-EECTTC---CCCTTCCEEECTTCCBCHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred CccEEEecCCcCc-ccchhh---ccCCCCCEEEcCCCCCcCcchHH--HHHhCCCCcEEecccc
Confidence 8899999887655 466555 77889999999888654 22222 2344667777766543
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1.7e-16 Score=168.94 Aligned_cols=193 Identities=22% Similarity=0.253 Sum_probs=156.1
Q ss_pred hcCCCcEEecCCCCCCCCCC-cc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCE
Q 002133 510 ARKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRT 586 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~ 586 (961)
.+.++++|++++|.+..++. .+ ++++|++|++++|.+. .++...|.++++|++|++++|.+..++ ..+.++++|++
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 45689999999999988875 34 8999999999999987 555556689999999999999999774 67999999999
Q ss_pred EEccCCCCCCC--ccccCCCCCcEEEeccCcCCc--cchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCC----EEE
Q 002133 587 LSFDCCHLEDV--ARVGDLAKLEILSFRNSHIEQ--LPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLN----ELY 658 (961)
Q Consensus 587 L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~----~L~ 658 (961)
|++++|.++.. ..++.+++|++|++++|.++. +|..+.++++|++|++++ +.++.+++..+..+++|+ +|+
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTTCCEEEE
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhhccccceeee
Confidence 99999999883 469999999999999999986 788999999999999999 578888877677777777 899
Q ss_pred ccCCCCccccCCCccchHhhcCCCCCCEEEccC------c-chhccccccccccccceeE
Q 002133 659 MGNSFTRKVEGQSNASVVELKQLSSLTILDMHI------P-DAQLLLEDLISLDLERYRI 711 (961)
Q Consensus 659 l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~------~-~~~~~~~~L~~l~L~~~~i 711 (961)
+++|.+..++. ......+|+.|+++. + ..+..+++|+.++|++|.+
T Consensus 184 ls~n~l~~~~~-------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 184 LSLNPMNFIQP-------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCSSCCCEECT-------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred cCCCcccccCc-------cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 99998776653 222333677777752 1 2234556666666766664
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=6.2e-16 Score=167.03 Aligned_cols=204 Identities=19% Similarity=0.259 Sum_probs=155.0
Q ss_pred ecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCCC
Q 002133 518 SIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDV 597 (961)
Q Consensus 518 ~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~ 597 (961)
.+..+.+..+....++++|+.|++++|.+. .++ . +..+++|++|++++|.+..++. +..+++|++|++++|.++++
T Consensus 25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~l~-~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~ 100 (308)
T 1h6u_A 25 AAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV 100 (308)
T ss_dssp HTTCSSTTSEECHHHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC
T ss_pred HhCCCCcCceecHHHcCCcCEEEeeCCCcc-Cch-h-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc
Confidence 444455544444447899999999999886 455 3 5789999999999999998887 99999999999999999998
Q ss_pred ccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHh
Q 002133 598 ARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVE 677 (961)
Q Consensus 598 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 677 (961)
+.+..+++|++|++++|.++.+|. +..+++|++|++++ +.++.+++ ++.+++|++|++++|.+..++ .
T Consensus 101 ~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--------~ 168 (308)
T 1h6u_A 101 SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVSDLT--------P 168 (308)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------G
T ss_pred hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC-CccCcCcc--ccCCCCccEEEccCCcCCCCh--------h
Confidence 889999999999999999998876 89999999999999 57777765 889999999999998766544 2
Q ss_pred hcCCCCCCEEEccCcchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEccc
Q 002133 678 LKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDN 757 (961)
Q Consensus 678 l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 757 (961)
+..+++|+.|+++ +|.+.. ++. ...+++|+.|++++
T Consensus 169 l~~l~~L~~L~l~-----------------~n~l~~-------------------------~~~--l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 169 LANLSKLTTLKAD-----------------DNKISD-------------------------ISP--LASLPNLIEVHLKN 204 (308)
T ss_dssp GTTCTTCCEEECC-----------------SSCCCC-------------------------CGG--GGGCTTCCEEECTT
T ss_pred hcCCCCCCEEECC-----------------CCccCc-------------------------Chh--hcCCCCCCEEEccC
Confidence 5556666655554 333210 000 12347788888888
Q ss_pred ccCcccccccccCCCCccCCcEEEeecCC
Q 002133 758 LNGIQNIVQELDNGEGFPRLKHLHVQNDP 786 (961)
Q Consensus 758 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 786 (961)
|..... + .+ ..+++|+.|++++|+
T Consensus 205 N~l~~~-~-~l---~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 205 NQISDV-S-PL---ANTSNLFIVTLTNQT 228 (308)
T ss_dssp SCCCBC-G-GG---TTCTTCCEEEEEEEE
T ss_pred CccCcc-c-cc---cCCCCCCEEEccCCe
Confidence 765433 2 13 678888888888874
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=4.5e-17 Score=172.86 Aligned_cols=167 Identities=17% Similarity=0.296 Sum_probs=135.3
Q ss_pred CCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCC
Q 002133 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCC 592 (961)
Q Consensus 513 ~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~ 592 (961)
++..+.+..+.+........+++|+.|++.+|.+. .++. +..+++|++|++++|.+..++ .++.+++|++|++++|
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC
Confidence 34455566666655544448899999999999876 4443 578999999999999999875 7899999999999999
Q ss_pred CCCCC--ccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccC
Q 002133 593 HLEDV--ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (961)
Q Consensus 593 ~l~~~--~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 669 (961)
.+++. ..++++++|++|++++|.++.+|.. ++++++|++|++++ +.++.+++..++.+++|++|++++|.+..++.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 99983 4589999999999999999988765 78999999999999 57888888878999999999999997765552
Q ss_pred CCccchHhhcCCCCCCEEEcc
Q 002133 670 QSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 670 ~~~~~~~~l~~l~~L~~L~l~ 690 (961)
..+..+++|+.|+++
T Consensus 175 ------~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 175 ------GVFDKLTQLKDLRLY 189 (272)
T ss_dssp ------TTTTTCTTCCEEECC
T ss_pred ------HHhcCCccCCEEECC
Confidence 234556666666654
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=6e-16 Score=162.04 Aligned_cols=170 Identities=19% Similarity=0.316 Sum_probs=142.4
Q ss_pred CCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEcc
Q 002133 512 KNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFD 590 (961)
Q Consensus 512 ~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~ 590 (961)
...++++++++.+..+|..+. ++++.|++++|.+.+. +...|.++++|++|+|++|.+..+ |..+..+++|++|+|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456789999999999997664 6899999999999854 444568999999999999999977 4558999999999999
Q ss_pred CCCCCC--CccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccc
Q 002133 591 CCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKV 667 (961)
Q Consensus 591 ~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 667 (961)
+|.++. +..+..+++|++|++++|.++.+|.. +.++++|++|++++ +.++.+++..++.+++|++|++++|.+..+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 999988 36788999999999999999998876 68899999999999 688899887789999999999999987766
Q ss_pred cCCCccchHhhcCCCCCCEEEcc
Q 002133 668 EGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 668 ~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
+. ..+..+++|+.|+++
T Consensus 171 ~~------~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 171 PH------GAFDRLGKLQTITLF 187 (251)
T ss_dssp CT------TTTTTCTTCCEEECC
T ss_pred CH------HHHhCCCCCCEEEee
Confidence 53 345556666666554
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=4.4e-18 Score=202.93 Aligned_cols=345 Identities=14% Similarity=0.038 Sum_probs=193.0
Q ss_pred cCCCcEEecCCCCCCCC-CCcc--CCCceeEEEeccCC-CCCCCChhhhhCCCceeEEEecCCCCCC-----CCccccCC
Q 002133 511 RKNPTAISIPFRDISEL-PDSL--QCTRLKLFLLFTED-SSLQIPNQFFDGMTELLVLHLTGIHFPS-----LPLSLGSL 581 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~l-p~~~--~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~-----lp~~~~~l 581 (961)
..++++|++++|.+... +..+ .+++|++|++.+|. +.......++.++++|++|++++|.++. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 44677777777665321 1112 46777777777763 3322233444567777777777776542 23333456
Q ss_pred cCCCEEEccCCC--CCC--C-ccccCCCCCcEEEeccC-cCCccchhhhcCCCcCEEecCCCC-----------------
Q 002133 582 INLRTLSFDCCH--LED--V-ARVGDLAKLEILSFRNS-HIEQLPEQIGNLTRLKLLDLSNCS----------------- 638 (961)
Q Consensus 582 ~~L~~L~L~~~~--l~~--~-~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~----------------- 638 (961)
++|++|++++|. ++. + ..+..+++|++|++++| .+..+|..+.++++|++|++..|.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 677777777775 221 1 22244677777777776 444566666666777777654331
Q ss_pred --C-----------CcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccCc-------chhccc
Q 002133 639 --K-----------LKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIP-------DAQLLL 698 (961)
Q Consensus 639 --~-----------l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-------~~~~~~ 698 (961)
. ...++ ..+..+++|++|++++|.+... ....-+..+++|+.|++... .....+
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLP-AVYSVCSRLTTLNLSYATVQSY-----DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337 (594)
T ss_dssp CTTCCEEECCBTCCGGGGG-GGHHHHTTCCEEECTTCCCCHH-----HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred CCCcccccCCcccchhhHH-HHHHhhCCCCEEEccCCCCCHH-----HHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhC
Confidence 1 11122 2234678888888888753311 11123567888888888632 112235
Q ss_pred cccccccccc---------eeEEEecccCCCCCCCccceEEecCCCccc-chHHHHHhhccccEEEcc-----cccCccc
Q 002133 699 EDLISLDLER---------YRIFIGDVWNWSGKYECSRTLKLKLDNSIY-LGYGIKKLLKTTEDLYLD-----NLNGIQN 763 (961)
Q Consensus 699 ~~L~~l~L~~---------~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~-~~~~~~~~l~~L~~L~L~-----~~~~~~~ 763 (961)
++|+.++|.. +.+............+.++.+.+..+.... ....+...+++|+.|+++ +|..++.
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 6677776632 222111111111123455666444322221 122333456899999999 4555553
Q ss_pred cccc--c-cCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEee
Q 002133 764 IVQE--L-DNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIE 840 (961)
Q Consensus 764 ~~~~--~-~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 840 (961)
.+.. + .....+++|+.|++++ .+...........+++|+.|++++|. ++......+ ...+++|++|+++
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l-----~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHV-----LSGCDSLRKLEIR 489 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHH-----HHHCTTCCEEEEE
T ss_pred CchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHH-----HhcCCCcCEEECc
Confidence 3211 0 0025678999999976 33322111012237899999999865 322211111 1358999999999
Q ss_pred cCCCCcccCChHHHhhcccccEEeEecccc
Q 002133 841 QCHRLKHLFPSFMAEKLLQLEELEVTDCKI 870 (961)
Q Consensus 841 ~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 870 (961)
+|+. +......++..+++|+.|++++|+.
T Consensus 490 ~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 490 DCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9975 4433333456799999999999975
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=5e-16 Score=166.04 Aligned_cols=178 Identities=19% Similarity=0.200 Sum_probs=154.2
Q ss_pred hcCCCcEEecCCCCCCCCCC-cc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEE
Q 002133 510 ARKNPTAISIPFRDISELPD-SL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTL 587 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~-~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L 587 (961)
.+.+++.|++++|.+..++. .+ .+++|+.|++++|.+.. ++.. +.+++|++|++++|.+..+|..+..+++|++|
T Consensus 29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence 45789999999999987754 33 89999999999999874 4432 68999999999999999999999999999999
Q ss_pred EccCCCCCC-C-ccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCC
Q 002133 588 SFDCCHLED-V-ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (961)
Q Consensus 588 ~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 664 (961)
++++|+++. + ..|.++++|++|++++|.++.+|.. +..+++|++|++++ +.++.+|+..+..+++|++|++++|.+
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 999999998 3 6799999999999999999998876 67899999999999 688999998788999999999999999
Q ss_pred ccccCCCccchHhhcCCCCCCEEEccCcchhccc
Q 002133 665 RKVEGQSNASVVELKQLSSLTILDMHIPDAQLLL 698 (961)
Q Consensus 665 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 698 (961)
..++. .+..+.+|+.+++........+
T Consensus 185 ~~ip~-------~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 185 YTIPK-------GFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCCT-------TTTTTCCCSEEECCSCCBCCSG
T ss_pred CccCh-------hhcccccCCeEEeCCCCccCcC
Confidence 88773 5566778999999855444333
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=9.8e-16 Score=163.95 Aligned_cols=165 Identities=22% Similarity=0.335 Sum_probs=142.7
Q ss_pred hcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEc
Q 002133 510 ARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSF 589 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L 589 (961)
...+++.|++++|.+..++....+++|++|++++|.+.+ ++. +.++++|++|++++|.++.+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 456899999999999998876689999999999999875 444 6899999999999999998765 899999999999
Q ss_pred cCCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccC
Q 002133 590 DCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (961)
Q Consensus 590 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 669 (961)
++|.+++++.+..+++|++|++++|.++.+ ..+..+++|++|++++ +.++.+++ +..+++|++|++++|.+..++
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~- 194 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISDLR- 194 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCBCG-
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcCCCCh-
Confidence 999999988899999999999999999988 4689999999999999 57788766 889999999999999776553
Q ss_pred CCccchHhhcCCCCCCEEEcc
Q 002133 670 QSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 670 ~~~~~~~~l~~l~~L~~L~l~ 690 (961)
.+..+++|+.|+++
T Consensus 195 -------~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 195 -------ALAGLKNLDVLELF 208 (291)
T ss_dssp -------GGTTCTTCSEEEEE
T ss_pred -------hhccCCCCCEEECc
Confidence 36667777766665
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.2e-16 Score=183.95 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=133.3
Q ss_pred hhcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEE
Q 002133 509 AARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLS 588 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~ 588 (961)
....+++.|++++|.+...++...+++|++|++++|.+.+ +| ..++|++|++++|.+..+|.. .+++|++|+
T Consensus 55 ~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-----~~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~ 126 (487)
T 3oja_A 55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-LL-----VGPSIETLHAANNNISRVSCS--RGQGKKNIY 126 (487)
T ss_dssp TTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE-EE-----ECTTCCEEECCSSCCCCEEEC--CCSSCEEEE
T ss_pred hCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC-CC-----CCCCcCEEECcCCcCCCCCcc--ccCCCCEEE
Confidence 3567999999999999776664599999999999998873 33 348999999999999987653 578999999
Q ss_pred ccCCCCCC--CccccCCCCCcEEEeccCcCCc-cchhhh-cCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCC
Q 002133 589 FDCCHLED--VARVGDLAKLEILSFRNSHIEQ-LPEQIG-NLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (961)
Q Consensus 589 L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~-lp~~~~-~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 664 (961)
|++|.+++ +..++.+++|++|++++|.++. .|..+. .+++|++|++++ +.++.+++ +..+++|++|++++|.+
T Consensus 127 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~~--~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKG--QVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT-SCCCEEEC--CCCCTTCCEEECCSSCC
T ss_pred CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC-Cccccccc--cccCCCCCEEECCCCCC
Confidence 99999998 4678999999999999999996 455665 799999999999 56777755 45799999999999987
Q ss_pred ccccCCCccchHhhcCCCCCCEEEcc
Q 002133 665 RKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 665 ~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
..++ ..+..+++|+.|+++
T Consensus 204 ~~~~-------~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 204 AFMG-------PEFQSAAGVTWISLR 222 (487)
T ss_dssp CEEC-------GGGGGGTTCSEEECT
T ss_pred CCCC-------HhHcCCCCccEEEec
Confidence 7655 234455555555554
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=8.2e-16 Score=169.59 Aligned_cols=149 Identities=16% Similarity=0.176 Sum_probs=82.3
Q ss_pred EEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCC-CCC-ccccCCcCCCE-EEccCC
Q 002133 516 AISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFP-SLP-LSLGSLINLRT-LSFDCC 592 (961)
Q Consensus 516 ~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~-~lp-~~~~~l~~L~~-L~L~~~ 592 (961)
.+..+++++..+|..+ .++++.|+|++|.+. .+|...|.++++|++|+|++|.+. .+| ..|.++++|+. +.+++|
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 4445555666666543 245666666666665 555555566666666666666654 343 23556665553 344445
Q ss_pred CCCC--CccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCc-cCCEEEccCCCCcc
Q 002133 593 HLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLS-RLNELYMGNSFTRK 666 (961)
Q Consensus 593 ~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~ 666 (961)
+++. +..|..+++|++|++++|.++.+|.. +....++..|++.+++.+..+++..+..+. .++.|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5555 34556666666666666666655442 334445556666555556555554444443 35555555554443
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.65 E-value=2.8e-16 Score=172.68 Aligned_cols=104 Identities=17% Similarity=0.222 Sum_probs=59.9
Q ss_pred CceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC---CccccCCCCCcEEEeccCcCC-ccchhhhcCCCcCEEec
Q 002133 559 TELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED---VARVGDLAKLEILSFRNSHIE-QLPEQIGNLTRLKLLDL 634 (961)
Q Consensus 559 ~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l 634 (961)
+++++|++++|.+...+..+..+++|++|++++|.++. +..+..+++|++|++++|.++ ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 55666666666655544445556666666666666543 244556666666666666655 44555666666666666
Q ss_pred CCCCCCccc-ChHHHhcCccCCEEEccCC
Q 002133 635 SNCSKLKVI-KPEVISRLSRLNELYMGNS 662 (961)
Q Consensus 635 ~~~~~l~~~-~~~~l~~l~~L~~L~l~~~ 662 (961)
++|..++.. .+..+.++++|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 665444421 1223556666666666655
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=6.1e-16 Score=160.74 Aligned_cols=172 Identities=12% Similarity=0.210 Sum_probs=145.8
Q ss_pred hcCCCcEEecCCCCCCCCCCc-c-CCCceeEEEeccCC-CCCCCChhhhhCCCceeEEEecC-CCCCCCC-ccccCCcCC
Q 002133 510 ARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTED-SSLQIPNQFFDGMTELLVLHLTG-IHFPSLP-LSLGSLINL 584 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~-~-~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~L~~-~~~~~lp-~~~~~l~~L 584 (961)
.+.+++.|++++|.+..+|.. + ++++|++|++++|. +. .++...|.++++|++|++++ |.++.+| ..|..+++|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 466899999999999988873 3 89999999999997 65 67776779999999999999 9999886 568999999
Q ss_pred CEEEccCCCCCCCccccCCCCCc---EEEeccC-cCCccchh-hhcCCCcC-EEecCCCCCCcccChHHHhcCccCCEEE
Q 002133 585 RTLSFDCCHLEDVARVGDLAKLE---ILSFRNS-HIEQLPEQ-IGNLTRLK-LLDLSNCSKLKVIKPEVISRLSRLNELY 658 (961)
Q Consensus 585 ~~L~L~~~~l~~~~~~~~l~~L~---~L~l~~~-~l~~lp~~-~~~l~~L~-~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 658 (961)
++|++++|.++.++.+..+++|+ +|++++| .++.+|.. +.++++|+ +|++++ +.++.+|+..+.. ++|++|+
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-CEEEEEE
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-CCCCEEE
Confidence 99999999999965588899998 9999999 99998875 88999999 999999 5778898875555 8999999
Q ss_pred ccCCC-CccccCCCccchHhhcCC-CCCCEEEcc
Q 002133 659 MGNSF-TRKVEGQSNASVVELKQL-SSLTILDMH 690 (961)
Q Consensus 659 l~~~~-~~~~~~~~~~~~~~l~~l-~~L~~L~l~ 690 (961)
+++|. +..++. ..+..+ ++|+.|+++
T Consensus 186 L~~n~~l~~i~~------~~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 186 LNKNKYLTVIDK------DAFGGVYSGPSLLDVS 213 (239)
T ss_dssp CTTCTTCCEECT------TTTTTCSBCCSEEECT
T ss_pred cCCCCCcccCCH------HHhhccccCCcEEECC
Confidence 99994 776653 345566 777777775
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=2.9e-15 Score=156.81 Aligned_cols=154 Identities=22% Similarity=0.328 Sum_probs=136.2
Q ss_pred hcCCCcEEecCCCCCCCCCCc-c-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCE
Q 002133 510 ARKNPTAISIPFRDISELPDS-L-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRT 586 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~-~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~ 586 (961)
.+..++.|++++|.+..++.. + ++++|++|++++|.+.+ ++...|.++++|++|++++|.++.+| ..+..+++|++
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence 456899999999999888764 3 89999999999999985 55555689999999999999999885 55799999999
Q ss_pred EEccCCCCCC-C-ccccCCCCCcEEEeccCcCCccch-hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCC
Q 002133 587 LSFDCCHLED-V-ARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (961)
Q Consensus 587 L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 663 (961)
|+|++|.++. + ..+..+++|++|++++|.++.+|. .++.+++|++|++++ +.++.+++..+..+++|++|++++|.
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 9999999998 3 457899999999999999999987 589999999999999 67888988778999999999999996
Q ss_pred Cc
Q 002133 664 TR 665 (961)
Q Consensus 664 ~~ 665 (961)
+.
T Consensus 191 ~~ 192 (251)
T 3m19_A 191 FD 192 (251)
T ss_dssp BC
T ss_pred ee
Confidence 54
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=1.9e-15 Score=166.61 Aligned_cols=119 Identities=14% Similarity=0.181 Sum_probs=67.2
Q ss_pred eEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEccCCCCCC-C--ccccCCCCCcE-EEe
Q 002133 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED-V--ARVGDLAKLEI-LSF 611 (961)
Q Consensus 537 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~-~--~~~~~l~~L~~-L~l 611 (961)
++++.+++.++ .+|..+ .+++++|+|++|.++.+|. .|.++++|++|+|++|.+.+ + ..|.++++|++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45566666655 566544 3456667777777666654 46666666666666666544 2 34556666554 344
Q ss_pred ccCcCCccch-hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEcc
Q 002133 612 RNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMG 660 (961)
Q Consensus 612 ~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 660 (961)
.+|+++.+|. .+..+++|++|++++ +.+..+|+..+....++..|++.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEE
T ss_pred cCCcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhc
Confidence 4456665543 355666666666666 44555554333344445555543
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=2.4e-16 Score=173.28 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=120.6
Q ss_pred CCCcEEecCCCCCCCCCCcc-CC--CceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCC--CCccccCCcCCCE
Q 002133 512 KNPTAISIPFRDISELPDSL-QC--TRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPS--LPLSLGSLINLRT 586 (961)
Q Consensus 512 ~~l~~L~l~~~~~~~lp~~~-~~--~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--lp~~~~~l~~L~~ 586 (961)
...++++++++.+. +..+ .+ ++++.|++.+|.+.+..+. + ..+++|++|++++|.+.. +|..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 35788888887765 2223 45 8899999999998866555 3 479999999999999873 7888999999999
Q ss_pred EEccCCCCCC--CccccCCCCCcEEEeccC-cCC--ccchhhhcCCCcCEEecCCCCCCccc-ChHHHhcCc-cCCEEEc
Q 002133 587 LSFDCCHLED--VARVGDLAKLEILSFRNS-HIE--QLPEQIGNLTRLKLLDLSNCSKLKVI-KPEVISRLS-RLNELYM 659 (961)
Q Consensus 587 L~L~~~~l~~--~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~-~~~~l~~l~-~L~~L~l 659 (961)
|++++|.+++ +..++.+++|++|++++| .++ .+|..+.++++|++|++++|..++.. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 9999999886 678899999999999999 788 47888999999999999997566642 234478899 9999999
Q ss_pred cCC
Q 002133 660 GNS 662 (961)
Q Consensus 660 ~~~ 662 (961)
++|
T Consensus 203 ~~~ 205 (336)
T 2ast_B 203 SGY 205 (336)
T ss_dssp CSC
T ss_pred CCC
Confidence 887
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=4.5e-15 Score=174.15 Aligned_cols=167 Identities=22% Similarity=0.337 Sum_probs=146.2
Q ss_pred hhcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEE
Q 002133 509 AARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLS 588 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~ 588 (961)
.....++.|++++|.+..++....+++|+.|+|++|.+.+ +++ +..+++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 3467899999999999999876699999999999999885 443 689999999999999999877 689999999999
Q ss_pred ccCCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 589 FDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 589 L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
|++|.++.++.+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++ +.+..+++ +..+++|++|+|++|.+..++
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh--hccCCCCCEEECcCCCCCCCh
Confidence 9999999988899999999999999999988 4689999999999999 57777766 899999999999999776543
Q ss_pred CCCccchHhhcCCCCCCEEEccC
Q 002133 669 GQSNASVVELKQLSSLTILDMHI 691 (961)
Q Consensus 669 ~~~~~~~~~l~~l~~L~~L~l~~ 691 (961)
.+..+++|+.|+++.
T Consensus 192 --------~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 192 --------ALAGLKNLDVLELFS 206 (605)
T ss_dssp --------GGTTCTTCSEEECCS
T ss_pred --------HHccCCCCCEEEccC
Confidence 477788888888863
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=8.6e-15 Score=150.58 Aligned_cols=149 Identities=25% Similarity=0.339 Sum_probs=130.3
Q ss_pred CcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEccCC
Q 002133 514 PTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCC 592 (961)
Q Consensus 514 l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~ 592 (961)
...++.+++.+..+|..+. ++|+.|++++|.+.+..| ..|.++++|++|+|++|.+..+|. .+..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4568888899999987654 899999999999985445 456899999999999999998865 4789999999999999
Q ss_pred CCCCC--ccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCc
Q 002133 593 HLEDV--ARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 593 ~l~~~--~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
.++.+ ..+..+++|++|++++|.++.+|..+..+++|++|++++ |.++.+++..+..+++|++|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99983 457899999999999999999999999999999999999 6888898877899999999999998543
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=4.1e-15 Score=151.92 Aligned_cols=149 Identities=13% Similarity=0.248 Sum_probs=128.6
Q ss_pred cEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEccCCC
Q 002133 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCH 593 (961)
Q Consensus 515 ~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 593 (961)
+.+++++|.+..+|..+ .+.++.|++++|.+.+..+..+|.++++|++|+|++|.++.++. .|..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 58899999999998755 34578999999999866566777899999999999999997754 79999999999999999
Q ss_pred CCC--CccccCCCCCcEEEeccCcCCcc-chhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCc
Q 002133 594 LED--VARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 594 l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
++. +..+..+++|++|++++|.++.+ |..+.++++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 988 35689999999999999999977 56689999999999999 6788887777899999999999998543
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=3.6e-15 Score=159.52 Aligned_cols=183 Identities=22% Similarity=0.288 Sum_probs=152.1
Q ss_pred CcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCC
Q 002133 514 PTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCH 593 (961)
Q Consensus 514 l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~ 593 (961)
+.++.+..+.+..+.....+++|+.|++++|.+. .++. +..+++|++|++++|.++.++. +..+++|++|++++|.
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 3444566666655544458899999999999887 4443 5889999999999999999877 9999999999999999
Q ss_pred CCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCcc
Q 002133 594 LEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNA 673 (961)
Q Consensus 594 l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 673 (961)
+++++.+..+++|++|++++|.++.++ .+..+++|++|++++ +.++.++ .++.+++|++|++++|.+..++
T Consensus 102 l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~----- 172 (291)
T 1h6t_A 102 VKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDIT--VLSRLTKLDTLSLEDNQISDIV----- 172 (291)
T ss_dssp CCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCG--GGGGCTTCSEEECCSSCCCCCG-----
T ss_pred CCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcch--hhccCCCCCEEEccCCccccch-----
Confidence 999888999999999999999999985 589999999999999 5777773 3899999999999999877654
Q ss_pred chHhhcCCCCCCEEEccCc-----chhccccccccccccceeEE
Q 002133 674 SVVELKQLSSLTILDMHIP-----DAQLLLEDLISLDLERYRIF 712 (961)
Q Consensus 674 ~~~~l~~l~~L~~L~l~~~-----~~~~~~~~L~~l~L~~~~i~ 712 (961)
.+..+++|+.|+++.. ..+..+++|+.+++++|.+.
T Consensus 173 ---~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 173 ---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ---GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred ---hhcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence 2788899999999732 23556777888888888764
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.58 E-value=9.2e-15 Score=149.30 Aligned_cols=148 Identities=20% Similarity=0.286 Sum_probs=124.3
Q ss_pred cEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCC
Q 002133 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (961)
Q Consensus 515 ~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 593 (961)
+.++.+++.+..+|..+. ++|+.|++++|.+. .++...|.++++|++|+|++|.+..+ |..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567888888888887553 68999999999887 55655668899999999999999876 7789999999999999999
Q ss_pred CCC-C-ccccCCCCCcEEEeccCcCCccc-hhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCc
Q 002133 594 LED-V-ARVGDLAKLEILSFRNSHIEQLP-EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 594 l~~-~-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
++. + ..+.++++|++|+|++|.++.++ ..+..+++|++|++++ |.++.+++..+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 988 3 44788999999999999999774 4588899999999999 6788888877888999999999988543
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=163.69 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=36.3
Q ss_pred CceeEEEecCCCCC-CCCccc--cCCcCCCEEEccCCCCCC--C----ccccCCCCCcEEEeccCcCCccc-hhhhcCCC
Q 002133 559 TELLVLHLTGIHFP-SLPLSL--GSLINLRTLSFDCCHLED--V----ARVGDLAKLEILSFRNSHIEQLP-EQIGNLTR 628 (961)
Q Consensus 559 ~~L~~L~L~~~~~~-~lp~~~--~~l~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~ 628 (961)
++|++|++++|.+. ..|..+ ..+++|++|+|++|.+++ + ..+..+++|++|++++|.++.+| ..++++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 34555555555544 223333 445555555555555443 1 12234455555555555554433 23445555
Q ss_pred cCEEecCC
Q 002133 629 LKLLDLSN 636 (961)
Q Consensus 629 L~~L~l~~ 636 (961)
|++|++++
T Consensus 171 L~~L~Ls~ 178 (310)
T 4glp_A 171 LTSLDLSD 178 (310)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 55555555
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.2e-14 Score=145.94 Aligned_cols=149 Identities=18% Similarity=0.261 Sum_probs=120.0
Q ss_pred hcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCC-CCccccCCcCCCEEE
Q 002133 510 ARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPS-LPLSLGSLINLRTLS 588 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~~~~l~~L~~L~ 588 (961)
...++++|++++|.+..+|....+++|++|++++|.+. .+ + .+..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~-~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NY-N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CC-G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cc-h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 35678999999999988885448899999999988654 23 3 35788999999999998884 577888899999999
Q ss_pred ccCCCCCC--CccccCCCCCcEEEeccCc-CCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCc
Q 002133 589 FDCCHLED--VARVGDLAKLEILSFRNSH-IEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 589 L~~~~l~~--~~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
+++|.+++ +..++.+++|++|++++|. ++.+| .+..+++|++|++++ +.++.++ .+..+++|++|++++|.++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChH--HhccCCCCCEEEeeCcccC
Confidence 99998887 6788889999999999997 88887 588889999999988 5677776 3788899999999888654
No 103
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=8.5e-14 Score=153.75 Aligned_cols=293 Identities=13% Similarity=0.088 Sum_probs=176.2
Q ss_pred cCCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC------CHHHHH
Q 002133 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP------DWKEIC 221 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~~~~~ 221 (961)
......|+||+++++.+.+++... +++.|+|++|+|||||++++++.. . .+|+++.... +...++
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHH
Confidence 344677999999999999988653 789999999999999999998764 1 6788775432 566666
Q ss_pred HHHHHHhCCC--------------ccC----CCCHHHHHHHHHHHHHcCCcEEEEEccccccccc-----ccc---cCCC
Q 002133 222 GRIADQLGLE--------------IVR----PDSLVEKANQLRQALKKKKRVLVILDDIWTQINL-----DDI---GIPF 275 (961)
Q Consensus 222 ~~i~~~l~~~--------------~~~----~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~-----~~l---~~~~ 275 (961)
..+.+.+... ... .....+....+.+.....++.+|||||++....+ ..+ ...+
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 6666654320 000 1234445555555444323899999999875432 111 1111
Q ss_pred CCCCcccccCCCceEEEEEecchhhhhh----------cC-CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHH
Q 002133 276 WDGEKQSVDNQGRWTLLLASRDQHVLRI----------NM-SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVE 344 (961)
Q Consensus 276 ~~~~~~~~~~~~gs~IlvTtR~~~v~~~----------~~-~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~ 344 (961)
.+ ..++.++|+|++....... .. .....+.+.+|+.+|+.+++...+....... -.+.+.+
T Consensus 159 ~~-------~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~ 230 (350)
T 2qen_A 159 YD-------SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEE 230 (350)
T ss_dssp HH-------HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHH
T ss_pred HH-------hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHH
Confidence 11 2357889999887543110 01 1124799999999999999987653221111 1346789
Q ss_pred HHHhhCCchHHHHHHHHHhcc-CChHHHH-HHHHHHHhcCCCcccccccccchhHhhhhcC---cHhHHHHHHHhcCCCC
Q 002133 345 IVGKCGGLPIAVSTIANALKG-QSTHVWK-DAINWLRKSNPRKIKGMDADLSSIELSYKVL---EPEAQFLFQLCGLLND 419 (961)
Q Consensus 345 i~~~c~glPLai~~~~~~L~~-~~~~~w~-~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~cf~~~s~fp~ 419 (961)
|++.++|+|+++..++..+.. .+...+. .+.+.. ...+.-.+..+ ++..+..+..+|.
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~l~~~~~~~~~~l~~la~--- 293 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA--------------KGLIMGELEELRRRSPRYVDILRAIAL--- 293 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHCHHHHHHHHHHHT---
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH--------------HHHHHHHHHHHHhCChhHHHHHHHHHh---
Confidence 999999999999999876532 2222221 111111 11111112222 7888999999987
Q ss_pred CCCCChhhHHHHHHHhCccccccchHHHHHHHHHHHHHHhhcccccccCCCCCeEee-hHHHHHHHH
Q 002133 420 GSRLPIDDLIRYVFALDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLNGDTEDHVKM-HQIIHALAV 485 (961)
Q Consensus 420 ~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~~i~~L~~~~l~~~~~~~~~~~m-H~lv~~~~~ 485 (961)
+ ..+...+.....+. .. + .+.. .+..+++.|.+.+++... .+.|.+ |++++++.+
T Consensus 294 g-~~~~~~l~~~~~~~--~~-~-~~~~----~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 294 G-YNRWSLIRDYLAVK--GT-K-IPEP----RLYALLENLKKMNWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp T-CCSHHHHHHHHHHT--TC-C-CCHH----HHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHHT
T ss_pred C-CCCHHHHHHHHHHH--hC-C-CCHH----HHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHHc
Confidence 2 24445554432221 10 0 1112 233456777778888654 245554 778887753
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=8.7e-15 Score=153.91 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=116.4
Q ss_pred cCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEcc
Q 002133 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 590 (961)
..++..+.+..+.+..++....+++|+.|++++|.+. .++ . +..+++|++|++++|.++.+|. +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3445566677777777764447788888888888776 455 2 4678888888888888887766 7788888888888
Q ss_pred CCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCC
Q 002133 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQ 670 (961)
Q Consensus 591 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 670 (961)
+|++++++.+.. ++|++|++++|.++.+| .+.++++|++|++++ +.++.++ .+..+++|++|++++|.+..+
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--- 165 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIV--MLGFLSKLEVLDLHGNEITNT--- 165 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCG--GGGGCTTCCEEECTTSCCCBC---
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCCh--HHccCCCCCEEECCCCcCcch---
Confidence 888877544444 78888888888888776 477888888888888 5677764 277888888888888765544
Q ss_pred CccchHhhcCCCCCCEEEcc
Q 002133 671 SNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 671 ~~~~~~~l~~l~~L~~L~l~ 690 (961)
..+..+++|+.|+++
T Consensus 166 -----~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 166 -----GGLTRLKKVNWIDLT 180 (263)
T ss_dssp -----TTSTTCCCCCEEEEE
T ss_pred -----HHhccCCCCCEEeCC
Confidence 234555555555544
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=1.8e-14 Score=151.44 Aligned_cols=151 Identities=22% Similarity=0.232 Sum_probs=132.9
Q ss_pred hhcCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEE
Q 002133 509 AARKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLS 588 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~ 588 (961)
....+++.|++++|.+..++....+++|+.|++++|.+.+ ++. +.++++|++|++++|.++.+|.... ++|++|+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~-~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD-LSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC-Chh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 3467899999999999999855599999999999999984 444 6899999999999999999886544 9999999
Q ss_pred ccCCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcccc
Q 002133 589 FDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 589 L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
+++|.+++++.+..+++|++|++++|.++.+| .+..+++|++|++++ +.++.+ . .+..+++|+.|++++|.+...+
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~-~-~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNT-G-GLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBC-T-TSTTCCCCCEEEEEEEEEECCC
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcch-H-HhccCCCCCEEeCCCCcccCCc
Confidence 99999999888999999999999999999997 689999999999999 577777 3 3899999999999998765443
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=157.23 Aligned_cols=190 Identities=18% Similarity=0.140 Sum_probs=136.3
Q ss_pred cCCCcEEecCCCCCCC-CCCc---cCCCceeEEEeccCCCCCCCC---hhhhhCCCceeEEEecCCCCCCC-CccccCCc
Q 002133 511 RKNPTAISIPFRDISE-LPDS---LQCTRLKLFLLFTEDSSLQIP---NQFFDGMTELLVLHLTGIHFPSL-PLSLGSLI 582 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~-lp~~---~~~~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~ 582 (961)
..++++|++++|.+.. .|.. ..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+..+ |..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4569999999998854 4443 468899999999999886544 22235788999999999999866 46788999
Q ss_pred CCCEEEccCCCCCC---C---ccccCCCCCcEEEeccCcCCccchh----hhcCCCcCEEecCCCCCCccc-ChHHHhcC
Q 002133 583 NLRTLSFDCCHLED---V---ARVGDLAKLEILSFRNSHIEQLPEQ----IGNLTRLKLLDLSNCSKLKVI-KPEVISRL 651 (961)
Q Consensus 583 ~L~~L~L~~~~l~~---~---~~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~~~l~~~-~~~~l~~l 651 (961)
+|++|+|++|++.+ . ..++.+++|++|++++|.++.+|.. ++.+++|++|++++ +.++.. |+. +..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~-~~~~ 247 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPS-APRC 247 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSC-CSSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhh-HHhc
Confidence 99999999998764 1 3346889999999999999877653 57889999999999 456665 544 5555
Q ss_pred ---ccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccCc-----chhccccccccccccceeE
Q 002133 652 ---SRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIP-----DAQLLLEDLISLDLERYRI 711 (961)
Q Consensus 652 ---~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-----~~~~~~~~L~~l~L~~~~i 711 (961)
++|++|++++|.+..++. .+ .++|+.|+++.. +....+++|+.++|++|.+
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~-------~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPK-------GL--PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCS-------CC--CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred cCcCcCCEEECCCCCCCchhh-------hh--cCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCC
Confidence 699999999998876663 11 156666666521 1133344555555555543
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=4e-15 Score=166.72 Aligned_cols=234 Identities=15% Similarity=0.123 Sum_probs=119.7
Q ss_pred cCCCcEEecCCCCCCCC-----CCcc-CCCceeEEEeccCC---CCCCCChhh------hhCCCceeEEEecCCCCCC--
Q 002133 511 RKNPTAISIPFRDISEL-----PDSL-QCTRLKLFLLFTED---SSLQIPNQF------FDGMTELLVLHLTGIHFPS-- 573 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~l-----p~~~-~~~~L~~L~l~~n~---~~~~~~~~~------~~~l~~L~~L~L~~~~~~~-- 573 (961)
..++++|++++|.+... +..+ .+++|++|++++|. +.+.+|..+ +..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 34566666666655431 1112 45666666666643 233334333 2456666666666666654
Q ss_pred ---CCccccCCcCCCEEEccCCCCCC--Cc----cccCC---------CCCcEEEeccCcCC--ccc---hhhhcCCCcC
Q 002133 574 ---LPLSLGSLINLRTLSFDCCHLED--VA----RVGDL---------AKLEILSFRNSHIE--QLP---EQIGNLTRLK 630 (961)
Q Consensus 574 ---lp~~~~~l~~L~~L~L~~~~l~~--~~----~~~~l---------~~L~~L~l~~~~l~--~lp---~~~~~l~~L~ 630 (961)
+|..+..+++|++|+|++|.++. +. .+..+ ++|++|++++|.++ .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 45556666666666666666543 11 22223 56666666666654 333 3455566666
Q ss_pred EEecCCCCCCcc-----cChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccCcchhcccccccccc
Q 002133 631 LLDLSNCSKLKV-----IKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISLD 705 (961)
Q Consensus 631 ~L~l~~~~~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l~ 705 (961)
+|++++| .++. +.+..+..+++|++|++++|.+.... .......+.. +++|+.++
T Consensus 191 ~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--~~~l~~~l~~-----------------~~~L~~L~ 250 (386)
T 2ca6_A 191 TVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--SSALAIALKS-----------------WPNLRELG 250 (386)
T ss_dssp EEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--HHHHHHHGGG-----------------CTTCCEEE
T ss_pred EEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--HHHHHHHHcc-----------------CCCcCEEE
Confidence 6666663 3331 11212556666666666666442100 0000122333 44455555
Q ss_pred ccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHH-hhccccEEEcccccCcc----cccccccCCCCccCCcEE
Q 002133 706 LERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKK-LLKTTEDLYLDNLNGIQ----NIVQELDNGEGFPRLKHL 780 (961)
Q Consensus 706 L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~----~~~~~~~~~~~l~~L~~L 780 (961)
|++|.+... ....++..+.. .+++|+.|+|++|.... .++..+ ..++++|++|
T Consensus 251 L~~n~i~~~--------------------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l--~~~l~~L~~L 308 (386)
T 2ca6_A 251 LNDCLLSAR--------------------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI--DEKMPDLLFL 308 (386)
T ss_dssp CTTCCCCHH--------------------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH--HHHCTTCCEE
T ss_pred CCCCCCchh--------------------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH--HhcCCCceEE
Confidence 555554100 00112222211 14778888888877655 244432 1346888888
Q ss_pred EeecCC
Q 002133 781 HVQNDP 786 (961)
Q Consensus 781 ~L~~~~ 786 (961)
++++|+
T Consensus 309 ~l~~N~ 314 (386)
T 2ca6_A 309 ELNGNR 314 (386)
T ss_dssp ECTTSB
T ss_pred EccCCc
Confidence 888885
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=3.5e-14 Score=142.38 Aligned_cols=145 Identities=18% Similarity=0.272 Sum_probs=124.0
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC--CccccCCCCCcEE
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEIL 609 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L 609 (961)
.+++|+.|++++|.+. .+| . +..+++|++|++++|.+..++ .+..+++|++|++++|.+++ +..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 7889999999999987 666 3 588999999999999877665 68899999999999999987 7899999999999
Q ss_pred EeccCcCCc-cchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEE
Q 002133 610 SFRNSHIEQ-LPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILD 688 (961)
Q Consensus 610 ~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 688 (961)
++++|.++. .|..++.+++|++|++++|..++.+|. +..+++|++|++++|.+..++ .+..+++|+.|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~~--------~l~~l~~L~~L~ 187 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYR--------GIEDFPKLNQLY 187 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCCT--------TGGGCSSCCEEE
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcChH--------HhccCCCCCEEE
Confidence 999999984 677899999999999999765888863 899999999999999766543 355666666666
Q ss_pred cc
Q 002133 689 MH 690 (961)
Q Consensus 689 l~ 690 (961)
++
T Consensus 188 l~ 189 (197)
T 4ezg_A 188 AF 189 (197)
T ss_dssp EC
T ss_pred ee
Confidence 54
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=1.4e-14 Score=169.97 Aligned_cols=184 Identities=22% Similarity=0.287 Sum_probs=155.8
Q ss_pred CCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCC
Q 002133 513 NPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCC 592 (961)
Q Consensus 513 ~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~ 592 (961)
++..+.+..+.+..+.....+++|+.|++++|.+. .++. +..+++|+.|+|++|.+..+|. +..+++|++|+|++|
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 44556666677766655558999999999999986 4553 5889999999999999998876 999999999999999
Q ss_pred CCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCc
Q 002133 593 HLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSN 672 (961)
Q Consensus 593 ~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 672 (961)
.++.++.+..+++|++|+|++|.++.+| .+..|++|+.|+|++ +.+..+ + .+..+++|+.|+|++|.+..++
T Consensus 98 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~~~---- 169 (605)
T 1m9s_A 98 KIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDI-T-VLSRLTKLDTLSLEDNQISDIV---- 169 (605)
T ss_dssp CCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCC-G-GGGSCTTCSEEECCSSCCCCCG----
T ss_pred CCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCC-CccCCc-h-hhcccCCCCEEECcCCcCCCch----
Confidence 9999889999999999999999999886 489999999999999 577777 3 3899999999999999776554
Q ss_pred cchHhhcCCCCCCEEEccCc-----chhccccccccccccceeEE
Q 002133 673 ASVVELKQLSSLTILDMHIP-----DAQLLLEDLISLDLERYRIF 712 (961)
Q Consensus 673 ~~~~~l~~l~~L~~L~l~~~-----~~~~~~~~L~~l~L~~~~i~ 712 (961)
.+..+++|+.|+++.. ..+..+++|+.|+|++|.+.
T Consensus 170 ----~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 170 ----PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ----GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred ----hhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCc
Confidence 2788999999999732 34667788899999999885
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=1.5e-14 Score=160.25 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=38.7
Q ss_pred eeEEEeccCCCCCCCCh---hhhhCCC-ceeEEEecCCCCCCC-CccccCC-----cCCCEEEccCCCCCC--Ccc----
Q 002133 536 LKLFLLFTEDSSLQIPN---QFFDGMT-ELLVLHLTGIHFPSL-PLSLGSL-----INLRTLSFDCCHLED--VAR---- 599 (961)
Q Consensus 536 L~~L~l~~n~~~~~~~~---~~~~~l~-~L~~L~L~~~~~~~l-p~~~~~l-----~~L~~L~L~~~~l~~--~~~---- 599 (961)
|++|++++|.+....+. ..+.+++ +|++|+|++|.++.. +..+..+ ++|++|+|++|.+++ +..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 55555555555422220 2234444 555555555555432 3333332 555555555555543 111
Q ss_pred ccCC-CCCcEEEeccCcCCcc
Q 002133 600 VGDL-AKLEILSFRNSHIEQL 619 (961)
Q Consensus 600 ~~~l-~~L~~L~l~~~~l~~l 619 (961)
+..+ ++|++|++++|.++..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGS
T ss_pred HHhCCCCccEEECcCCcCCcH
Confidence 2223 4555555555555533
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=2.5e-15 Score=168.35 Aligned_cols=251 Identities=16% Similarity=0.115 Sum_probs=157.3
Q ss_pred cCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChh---hhhCCCceeEEEecCCCCCC----CCccc-------cCCcC
Q 002133 519 IPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQ---FFDGMTELLVLHLTGIHFPS----LPLSL-------GSLIN 583 (961)
Q Consensus 519 l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~----lp~~~-------~~l~~ 583 (961)
+....+..++..+ .+++|++|++++|.+....+.. .+..+++|++|+|++|.+.. +|..+ ..+++
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 3333344555555 6888999999988876543332 24578889999998876653 34444 67888
Q ss_pred CCEEEccCCCCCC------CccccCCCCCcEEEeccCcCCc-----cchhhhcC---------CCcCEEecCCCCCCc--
Q 002133 584 LRTLSFDCCHLED------VARVGDLAKLEILSFRNSHIEQ-----LPEQIGNL---------TRLKLLDLSNCSKLK-- 641 (961)
Q Consensus 584 L~~L~L~~~~l~~------~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l---------~~L~~L~l~~~~~l~-- 641 (961)
|++|+|++|.++. +..+..+++|++|+|++|.++. ++..+..+ ++|++|++++| .++
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~ 174 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENG 174 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcH
Confidence 9999999988876 2467788889999998888762 33334444 88889988884 453
Q ss_pred ccCh--HHHhcCccCCEEEccCCCCccccCCCccchH-hhcCCCCCCEEEccCcchhccccccccccccceeEEEecccC
Q 002133 642 VIKP--EVISRLSRLNELYMGNSFTRKVEGQSNASVV-ELKQLSSLTILDMHIPDAQLLLEDLISLDLERYRIFIGDVWN 718 (961)
Q Consensus 642 ~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~L~~l~L~~~~i~~~~~~~ 718 (961)
.++. ..+..+++|++|++++|.+.... ....+. .+..+++|+.|++ ++|.+...
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g--~~~l~~~~l~~~~~L~~L~L-----------------s~n~l~~~---- 231 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEG--IEHLLLEGLAYCQELKVLDL-----------------QDNTFTHL---- 231 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHH--HHHHHHTTGGGCTTCCEEEC-----------------CSSCCHHH----
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhH--HHHHHHHHhhcCCCccEEEC-----------------cCCCCCcH----
Confidence 3321 24678888888888888654110 000111 3445555555544 44433100
Q ss_pred CCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCccc----ccccccCCCCccCCcEEEeecCCCcc----c
Q 002133 719 WSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQN----IVQELDNGEGFPRLKHLHVQNDPKIL----C 790 (961)
Q Consensus 719 ~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~l~~L~~L~L~~~~~l~----~ 790 (961)
+...++..+ ..+++|+.|+|++|..... ++..+ ..+.+++|+.|+|++|.... .
T Consensus 232 ----------------g~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 232 ----------------GSSALAIAL-KSWPNLRELGLNDCLLSARGAAAVVDAF-SKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp ----------------HHHHHHHHG-GGCTTCCEEECTTCCCCHHHHHHHHHHH-HTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred ----------------HHHHHHHHH-ccCCCcCEEECCCCCCchhhHHHHHHHH-hhccCCCeEEEECcCCcCCHHHHHH
Confidence 001122222 2348899999999986544 23333 11448999999999996433 1
Q ss_pred ccCCCCCccCCccceecccccc
Q 002133 791 IANSEGPVIFPLLQSLFLCNLI 812 (961)
Q Consensus 791 i~~~~~~~~~~~L~~L~l~~~~ 812 (961)
++.. ....+|+|+.|++++++
T Consensus 294 l~~~-l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 294 LKTV-IDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHH-HHHHCTTCCEEECTTSB
T ss_pred HHHH-HHhcCCCceEEEccCCc
Confidence 4321 12457999999999853
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=9.6e-14 Score=140.63 Aligned_cols=146 Identities=25% Similarity=0.396 Sum_probs=116.0
Q ss_pred cEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCcc-ccCCcCCCEEEccCCC
Q 002133 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLSFDCCH 593 (961)
Q Consensus 515 ~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L~L~~~~ 593 (961)
+.+....+.+..+|... .++|+.|++++|.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46677777777777554 468888999888887 56666668888999999999988877654 6788889999999888
Q ss_pred CCC-C-ccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCC
Q 002133 594 LED-V-ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (961)
Q Consensus 594 l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 663 (961)
++. + ..+.++++|++|++++|.++.+|.. +.++++|++|++++ +.++.+++..+..+++|++|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCC
Confidence 887 3 4478888899999988888887765 67888888888888 56777777767888888888888873
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=7.3e-14 Score=161.90 Aligned_cols=139 Identities=21% Similarity=0.317 Sum_probs=117.5
Q ss_pred CCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccC
Q 002133 512 KNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDC 591 (961)
Q Consensus 512 ~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~ 591 (961)
.+++.|++++|.+..+|..+ +++|+.|++++|.+. .+| ..+++|++|++++|.++.+|. +.+ +|++|+|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 47899999999998888765 488999999999987 677 347899999999999998888 665 899999999
Q ss_pred CCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccC
Q 002133 592 CHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEG 669 (961)
Q Consensus 592 ~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 669 (961)
|.+++++. .+++|++|++++|.++.+|. .+++|++|++++ |.++.+|. +. ++|++|++++|.+..++.
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence 99988544 78999999999999999887 678999999999 56777876 54 899999999998877663
No 114
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.52 E-value=5.9e-13 Score=150.59 Aligned_cols=293 Identities=15% Similarity=0.097 Sum_probs=177.9
Q ss_pred ccccCCchHHHHHHHHHh-c----c--CCccEEEE--EcCCCCcHHHHHHHHHHHHhhc---CCCC-EEEEEEecCCCCH
Q 002133 151 YVHFPSRNPVFQKMMESL-R----D--SNVNMIGL--YGMGGVGKTTLVKVVARQVVKE---DLFD-VVVDAEVTHTPDW 217 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~~ 217 (961)
+..++||+++++++.+.+ . . ...+.+.| +|++|+||||||+++++..... ..|+ .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367899999999999888 4 2 34556777 9999999999999999886542 1233 3578887777788
Q ss_pred HHHHHHHHHHhCCCccC-CCCHHHHHHHHHHHHH-cCCcEEEEEcccccccc--------cccccCCCCCCCccccc-CC
Q 002133 218 KEICGRIADQLGLEIVR-PDSLVEKANQLRQALK-KKKRVLVILDDIWTQIN--------LDDIGIPFWDGEKQSVD-NQ 286 (961)
Q Consensus 218 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~--------~~~l~~~~~~~~~~~~~-~~ 286 (961)
..++..++.+++..... ..+..+....+.+.+. .+++++|||||++.... +..+...+.. .. .+
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~-----~~~~~ 175 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE-----IPSRD 175 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH-----SCCTT
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh-----cccCC
Confidence 99999999999765432 2234555666776664 35789999999987532 1111111100 00 12
Q ss_pred --CceEEEEEecchhhhh--------hcCCCCceEEccCCCHHHHHHHHHHHhC---CCCCCCchhHHHHHHHHhhC---
Q 002133 287 --GRWTLLLASRDQHVLR--------INMSNPRIFSISTLADGEAKSLFEKIVG---DSAKESDCRAIGVEIVGKCG--- 350 (961)
Q Consensus 287 --~gs~IlvTtR~~~v~~--------~~~~~~~~~~l~~L~~~~s~~Lf~~~~~---~~~~~~~~~~~~~~i~~~c~--- 350 (961)
....||+||+...+.. ....-...+.+.+++.++++++|...+. ... .--.+....|++.++
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDK 253 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGG
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhc
Confidence 4556888887554321 0011123399999999999999986643 211 112356788999999
Q ss_pred ---CchHHHHHHHHHh-c-----cC---ChHHHHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHHHHHhcCCC
Q 002133 351 ---GLPIAVSTIANAL-K-----GQ---STHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLLN 418 (961)
Q Consensus 351 ---glPLai~~~~~~L-~-----~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp 418 (961)
|.|..+..++... . +. +.+.+..+...... ...+.-++..||++.+.++..++.+.
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~~~~~~l~aia~l~ 321 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSIHELIILRLIAEAT 321 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9997655554321 1 11 23334333332110 12234467789999999999888653
Q ss_pred --CCCCCChhhHHHHHH--H-hCccccccchHHHHHHHHHHHHHHhhccccccc
Q 002133 419 --DGSRLPIDDLIRYVF--A-LDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLN 467 (961)
Q Consensus 419 --~~~~i~~~~li~~w~--a-~g~~~~~~~~~~~~~~~~~~~i~~L~~~~l~~~ 467 (961)
.+..+...++...|. + .- .-..... ...+..+++.|.+.+++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 322 LGGMEWINAGLLRQRYEDASLTM-YNVKPRG----YTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp HTTCSSBCHHHHHHHHHHHHHHH-SCCCCCC----HHHHHHHHHHHHHTTSEEE
T ss_pred hcCCCCccHHHHHHHHHHHHHhh-cCCCCCC----HHHHHHHHHHHHhCCCEEe
Confidence 333566666555442 2 11 1000011 1233445677777888854
No 115
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=5.2e-13 Score=147.86 Aligned_cols=291 Identities=12% Similarity=0.164 Sum_probs=168.7
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-----CCHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-----PDWKEICGR 223 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~ 223 (961)
.....|+||+++++.|.+ +.. +++.|+|++|+|||||++++++.... ..+|+++... .+...+...
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHH
Confidence 345679999999999999 755 69999999999999999999987641 2578887642 344555444
Q ss_pred HHHHhC------------------CCccCC----CC---HHHHHHHHHHHHHc-C-CcEEEEEcccccccc-----cccc
Q 002133 224 IADQLG------------------LEIVRP----DS---LVEKANQLRQALKK-K-KRVLVILDDIWTQIN-----LDDI 271 (961)
Q Consensus 224 i~~~l~------------------~~~~~~----~~---~~~~~~~l~~~l~~-~-kr~LlVlDdv~~~~~-----~~~l 271 (961)
+.+.+. ...... .. .......+.+.+.. . ++++|||||++.... +..+
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 443321 000000 00 00112334444433 1 389999999976432 2111
Q ss_pred cCCCCCCCcccccCCCceEEEEEecchhhhhh----------cCCC-CceEEccCCCHHHHHHHHHHHhCC-CCCCCchh
Q 002133 272 GIPFWDGEKQSVDNQGRWTLLLASRDQHVLRI----------NMSN-PRIFSISTLADGEAKSLFEKIVGD-SAKESDCR 339 (961)
Q Consensus 272 ~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~~~----------~~~~-~~~~~l~~L~~~~s~~Lf~~~~~~-~~~~~~~~ 339 (961)
...+.+ ..++.++|+|+|....... ..+. ...+.+.+|+.+++.+++...+.. ......
T Consensus 161 l~~~~~-------~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-- 231 (357)
T 2fna_A 161 LAYAYD-------NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-- 231 (357)
T ss_dssp HHHHHH-------HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC--
T ss_pred HHHHHH-------cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc--
Confidence 111111 2357889999997643110 0111 257999999999999999876531 111122
Q ss_pred HHHHHHHHhhCCchHHHHHHHHHhc-cCChHHHHH-HHHHHHhcCCCcccccccccchh-Hhhh--hcCcHhHHHHHHHh
Q 002133 340 AIGVEIVGKCGGLPIAVSTIANALK-GQSTHVWKD-AINWLRKSNPRKIKGMDADLSSI-ELSY--KVLEPEAQFLFQLC 414 (961)
Q Consensus 340 ~~~~~i~~~c~glPLai~~~~~~L~-~~~~~~w~~-~~~~l~~~~~~~~~~~~~~~~~l-~~sy--~~L~~~~k~cf~~~ 414 (961)
. ..|++.++|+|+++..++..+. ..+...|.. +.+..... + ...+ .+.+ ..|++..+..+..+
T Consensus 232 -~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~l~~~~~~~~~l~~~~~~~l~~l 299 (357)
T 2fna_A 232 -Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL-------I---LKEFENFLHGREIARKRYLNIMRTL 299 (357)
T ss_dssp -H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------H---HHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred -H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHH-------H---HHHHHHHhhccccccHHHHHHHHHH
Confidence 1 7899999999999999988764 233333321 11111000 0 1111 1111 16889999999999
Q ss_pred cCCCCCCCCChhhHHHHHH-HhCccccccchHHHHHHHHHHHHHHhhcccccccCCCCCeEe-ehHHHHHHH
Q 002133 415 GLLNDGSRLPIDDLIRYVF-ALDNLFTGIDTLEVARNRVYTLMDHLKGPCLLLNGDTEDHVK-MHQIIHALA 484 (961)
Q Consensus 415 s~fp~~~~i~~~~li~~w~-a~g~~~~~~~~~~~~~~~~~~~i~~L~~~~l~~~~~~~~~~~-mH~lv~~~~ 484 (961)
|. +. +...+..... ..| . ..+. ..+...++.|.+.+++...+ +.|+ .|++++++.
T Consensus 300 a~---g~--~~~~l~~~~~~~~g-~---~~~~----~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 300 SK---CG--KWSDVKRALELEEG-I---EISD----SEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp TT---CB--CHHHHHHHHHHHHC-S---CCCH----HHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred Hc---CC--CHHHHHHHHHHhcC-C---CCCH----HHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 98 21 4444432110 111 0 0011 22344567777788887543 4465 478888764
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=8.3e-14 Score=141.11 Aligned_cols=164 Identities=20% Similarity=0.265 Sum_probs=137.6
Q ss_pred eEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEccCCCCCC-C-ccccCCCCCcEEEecc
Q 002133 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED-V-ARVGDLAKLEILSFRN 613 (961)
Q Consensus 537 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~ 613 (961)
+.+++.++.+. .+|..+ .++|++|++++|.++.+|. .+..+++|++|++++|+++. + ..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 46777777765 566544 5689999999999998865 47899999999999999998 3 4578999999999999
Q ss_pred CcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccCc
Q 002133 614 SHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIP 692 (961)
Q Consensus 614 ~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 692 (961)
|.++.+|.. +.++++|++|++++ +.++.+++..+..+++|++|++++|.+..++. ..+..+++|+.|+++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSC
T ss_pred CcCCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCCccceeCH------HHhccCCCccEEEecCC
Confidence 999988876 68999999999999 67888888878999999999999998776663 34678899999999877
Q ss_pred chhccccccccccccceeE
Q 002133 693 DAQLLLEDLISLDLERYRI 711 (961)
Q Consensus 693 ~~~~~~~~L~~l~L~~~~i 711 (961)
.....++.++.+++..|.+
T Consensus 159 ~~~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 159 PWDCTCPGIRYLSEWINKH 177 (208)
T ss_dssp CBCCCTTTTHHHHHHHHHC
T ss_pred CeecCCCCHHHHHHHHHhC
Confidence 7677777888888877765
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=4.5e-14 Score=156.28 Aligned_cols=169 Identities=24% Similarity=0.311 Sum_probs=119.4
Q ss_pred cEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhh-CCCceeEEEecCCCCCCCC-ccccCCcCCCEEEccCC
Q 002133 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFD-GMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCC 592 (961)
Q Consensus 515 ~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~ 592 (961)
+.++++++.+..+|..+ .+.++.|+|++|.+. .++...|. ++++|++|+|++|.+..++ ..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 56777777787777644 245778888888876 44444455 7888888888888888664 45788888888888888
Q ss_pred CCCC-C-ccccCCCCCcEEEeccCcCCcc-chhhhcCCCcCEEecCCCCCCcccChHHH---hcCccCCEEEccCCCCcc
Q 002133 593 HLED-V-ARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNCSKLKVIKPEVI---SRLSRLNELYMGNSFTRK 666 (961)
Q Consensus 593 ~l~~-~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~~~~~~l---~~l~~L~~L~l~~~~~~~ 666 (961)
+++. + ..|.++++|++|+|++|.++.+ |..+.++++|++|+|++ +.++.+|...+ ..+++|++|++++|.+..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 8777 2 4577888888888888888866 44577888888888888 57777777655 567888888888887766
Q ss_pred ccCCCccchHhhcCCCC--CCEEEccCc
Q 002133 667 VEGQSNASVVELKQLSS--LTILDMHIP 692 (961)
Q Consensus 667 ~~~~~~~~~~~l~~l~~--L~~L~l~~~ 692 (961)
++. ..+..++. |+.|++...
T Consensus 178 l~~------~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 178 LPL------TDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCH------HHHHHSCHHHHTTEECCSS
T ss_pred cCH------HHhhhccHhhcceEEecCC
Confidence 552 34444544 355666533
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=4.7e-14 Score=156.09 Aligned_cols=153 Identities=25% Similarity=0.337 Sum_probs=108.3
Q ss_pred hcCCCcEEecCCCCCCCCCCcc---CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCC
Q 002133 510 ARKNPTAISIPFRDISELPDSL---QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLR 585 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~ 585 (961)
.+..++.|++++|.+..++... ++++|+.|++++|.+. .++...|.++++|++|+|++|.++.+|. .|..+++|+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 3556777788877777666532 6777788888777776 4444455777778888888877776643 477777888
Q ss_pred EEEccCCCCCC--CccccCCCCCcEEEeccCcCCccchhh----hcCCCcCEEecCCCCCCcccChHHHhcCcc--CCEE
Q 002133 586 TLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQI----GNLTRLKLLDLSNCSKLKVIKPEVISRLSR--LNEL 657 (961)
Q Consensus 586 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~--L~~L 657 (961)
+|+|++|.++. +..|.++++|++|+|++|.++.+|..+ ..+++|++|+|++ |.++.+|...+..+++ |+.|
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTE
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceE
Confidence 88888777776 466777778888888888777777664 4677788888877 5677777766777776 3777
Q ss_pred EccCCCC
Q 002133 658 YMGNSFT 664 (961)
Q Consensus 658 ~l~~~~~ 664 (961)
++++|.+
T Consensus 195 ~l~~N~~ 201 (361)
T 2xot_A 195 YLHNNPL 201 (361)
T ss_dssp ECCSSCE
T ss_pred EecCCCc
Confidence 7777743
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=1.2e-13 Score=140.96 Aligned_cols=143 Identities=16% Similarity=0.281 Sum_probs=121.3
Q ss_pred eEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEecc
Q 002133 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRN 613 (961)
Q Consensus 537 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~ 613 (961)
+.++++++.+. .+|..+ .++|+.|++++|.++.+|. .|..+++|++|+|++|.++. +..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888876 677655 3789999999999998855 79999999999999999988 57899999999999999
Q ss_pred CcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEcc
Q 002133 614 SHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 614 ~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
|.++.+|.. +.++++|++|++++ +.++.+++..+..+++|++|++++|.+..++. ..+..+++|+.|+++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK------GTFSPLRAIQTMHLA 160 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECC
T ss_pred CcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEECH------HHHhCCCCCCEEEeC
Confidence 999999877 68899999999999 67888888779999999999999998876663 235556666666554
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=8.1e-14 Score=135.85 Aligned_cols=132 Identities=20% Similarity=0.222 Sum_probs=83.0
Q ss_pred CceeEEEeccCCCC-CCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC-C-ccccCCCCCcEEE
Q 002133 534 TRLKLFLLFTEDSS-LQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-V-ARVGDLAKLEILS 610 (961)
Q Consensus 534 ~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~ 610 (961)
++|+.|++++|.+. +.+|.. +..+++|++|++++|.++.+ ..+..+++|++|++++|.++. + ..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555666555554 344443 35566666666666666655 556666667777777766666 3 3344467777777
Q ss_pred eccCcCCccc--hhhhcCCCcCEEecCCCCCCcccCh---HHHhcCccCCEEEccCCCCcccc
Q 002133 611 FRNSHIEQLP--EQIGNLTRLKLLDLSNCSKLKVIKP---EVISRLSRLNELYMGNSFTRKVE 668 (961)
Q Consensus 611 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~~~~~~ 668 (961)
+++|.++.+| ..+..+++|++|++++ +.+..+|+ ..+..+++|++|++++|....++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 7777776665 4566777777777777 45566655 34667777777777776655544
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=3.3e-13 Score=138.73 Aligned_cols=146 Identities=23% Similarity=0.292 Sum_probs=123.5
Q ss_pred ceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCCCCCC--ccccCCCCCcEEEe
Q 002133 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLEDV--ARVGDLAKLEILSF 611 (961)
Q Consensus 535 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l 611 (961)
..+.++++++.+. .+|..+ .++|++|+|++|.+..+ |..+..+++|++|+|++|.++.+ ..+..+++|++|+|
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3567888888775 778655 48999999999999977 77799999999999999999883 55799999999999
Q ss_pred ccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEcc
Q 002133 612 RNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 612 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
++|.++.+|.. +..+++|++|++++ +.++.+|.. +..+++|++|++++|.+..++. ..+..+++|+.|++.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSIPH------GAFDRLSSLTHAYLF 167 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCCCT------TTTTTCTTCCEEECT
T ss_pred CCCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCccCH------HHHhCCCCCCEEEee
Confidence 99999999876 68999999999999 678899876 7999999999999998876663 346677777777776
Q ss_pred Cc
Q 002133 691 IP 692 (961)
Q Consensus 691 ~~ 692 (961)
..
T Consensus 168 ~N 169 (229)
T 3e6j_A 168 GN 169 (229)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=1.6e-14 Score=160.12 Aligned_cols=155 Identities=10% Similarity=0.223 Sum_probs=119.3
Q ss_pred hcCCCcEEecCCCCCCCCCC-----cc-CCC-ceeEEEeccCCCCCCCChhhhhCC-----CceeEEEecCCCCCCCC-c
Q 002133 510 ARKNPTAISIPFRDISELPD-----SL-QCT-RLKLFLLFTEDSSLQIPNQFFDGM-----TELLVLHLTGIHFPSLP-L 576 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~~lp~-----~~-~~~-~L~~L~l~~n~~~~~~~~~~~~~l-----~~L~~L~L~~~~~~~lp-~ 576 (961)
.+.++++|++++|.+...+. .+ .++ +|++|++++|.+....+..+ ..+ ++|++|+|++|.++..+ .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHHH
Confidence 45669999999999988764 33 677 89999999999986555444 333 99999999999998553 3
Q ss_pred c----ccCC-cCCCEEEccCCCCCCC--cc----ccC-CCCCcEEEeccCcCC-----ccchhhhcCC-CcCEEecCCCC
Q 002133 577 S----LGSL-INLRTLSFDCCHLEDV--AR----VGD-LAKLEILSFRNSHIE-----QLPEQIGNLT-RLKLLDLSNCS 638 (961)
Q Consensus 577 ~----~~~l-~~L~~L~L~~~~l~~~--~~----~~~-l~~L~~L~l~~~~l~-----~lp~~~~~l~-~L~~L~l~~~~ 638 (961)
. +..+ ++|++|+|++|.+++. .. +.. .++|++|++++|.++ .++..+..++ +|++|++++ +
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG-N 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-S
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC-C
Confidence 3 4455 8999999999998872 23 444 369999999999888 4556667776 999999999 4
Q ss_pred CCcccChHHH----hcC-ccCCEEEccCCCCcc
Q 002133 639 KLKVIKPEVI----SRL-SRLNELYMGNSFTRK 666 (961)
Q Consensus 639 ~l~~~~~~~l----~~l-~~L~~L~l~~~~~~~ 666 (961)
.++...+..+ ..+ ++|++|++++|.+..
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 6776665434 444 599999999987653
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=3e-13 Score=137.99 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=118.8
Q ss_pred eEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC--ccccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEec
Q 002133 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP--LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFR 612 (961)
Q Consensus 537 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp--~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~ 612 (961)
+++++++|.+. .+|..+ ...+++|+|++|.++.++ ..|..+++|++|+|++|.++. +..|.++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 58999999887 677655 456789999999999773 348999999999999999998 3579999999999999
Q ss_pred cCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEcc
Q 002133 613 NSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 613 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
+|.++.+|.. +.++++|++|++++ +.++.+++..+..+++|++|++++|.+..++. ..+..+++|+.|+++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTVAP------GAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT------TTTTTCTTCCEEECC
T ss_pred CCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEECH------HHhcCCCCCCEEEec
Confidence 9999988765 88999999999999 67888877779999999999999998776642 345566666666554
No 124
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.46 E-value=1.3e-14 Score=128.83 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=67.7
Q ss_pred HHHHHHHHHhHhhhhhchhhchHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhhhhhhccccccc
Q 002133 15 SKVVELLFDPIREEISYVCKYQSNVKELKNVGERVEQAVKHADRQG-DDIFSDVQEWLTKFDEWTKRVGNAVVEDEGEDE 93 (961)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~wl~~l~~~~y~~~ed~ld~~~~~~ 93 (961)
+.+.++|.+.+.+|+.++.++++++++|+++|+.|+++|++|+++. ...++.++.|+++|||++| |+||++|+|.+..
T Consensus 4 ~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaY-D~ED~iD~f~~~~ 82 (115)
T 3qfl_A 4 SNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSY-VIEDVVDKFLVQV 82 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 3445555578889999999999999999999999999999999873 2358999999999999999 9999999997543
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.6e-13 Score=130.82 Aligned_cols=124 Identities=23% Similarity=0.271 Sum_probs=66.2
Q ss_pred CceeEEEeccCCCC-CCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC-C-ccccCCCCCcEEE
Q 002133 534 TRLKLFLLFTEDSS-LQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-V-ARVGDLAKLEILS 610 (961)
Q Consensus 534 ~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~ 610 (961)
++|+.|++++|.+. +.+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+++ + ..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555544 334432 24555555555555555554 445555566666666665555 2 3334455666666
Q ss_pred eccCcCCccc--hhhhcCCCcCEEecCCCCCCcccCh---HHHhcCccCCEEEcc
Q 002133 611 FRNSHIEQLP--EQIGNLTRLKLLDLSNCSKLKVIKP---EVISRLSRLNELYMG 660 (961)
Q Consensus 611 l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~ 660 (961)
+++|.++.+| ..++.+++|++|++++ +.++.+++ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccCC
Confidence 6666555543 4455566666666665 34555544 345556666665543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.5e-13 Score=132.39 Aligned_cols=132 Identities=16% Similarity=0.139 Sum_probs=116.8
Q ss_pred hcCCCcEEecCCCCCC--CCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCC-CCccccCCcCCC
Q 002133 510 ARKNPTAISIPFRDIS--ELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPS-LPLSLGSLINLR 585 (961)
Q Consensus 510 ~~~~l~~L~l~~~~~~--~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~~~~l~~L~ 585 (961)
.+.++++|++++|.+. .+|..+ .+++|+.|++++|.+... ..+..+++|++|++++|.+.. +|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3578999999999998 888876 899999999999998754 346889999999999999997 788888899999
Q ss_pred EEEccCCCCCC-C--ccccCCCCCcEEEeccCcCCccch----hhhcCCCcCEEecCCCCCCcccCh
Q 002133 586 TLSFDCCHLED-V--ARVGDLAKLEILSFRNSHIEQLPE----QIGNLTRLKLLDLSNCSKLKVIKP 645 (961)
Q Consensus 586 ~L~L~~~~l~~-~--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~~~l~~~~~ 645 (961)
+|++++|.+++ + ..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+..+|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 99999999998 3 689999999999999999998886 6899999999999995 5666654
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=6.4e-13 Score=154.02 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=128.6
Q ss_pred cCCCcEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEcc
Q 002133 511 RKNPTAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFD 590 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~ 590 (961)
.++++.|++++|.+..+| ..+++|+.|++++|.+.+ +|. + .+ +|++|++++|.++.+|. .+++|++|+|+
T Consensus 79 ~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEeCC
Confidence 467999999999999999 467999999999999985 777 4 33 99999999999999987 68999999999
Q ss_pred CCCCCCCccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccC-------CEEEccCCC
Q 002133 591 CCHLEDVARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRL-------NELYMGNSF 663 (961)
Q Consensus 591 ~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L-------~~L~l~~~~ 663 (961)
+|.++.++. .+++|++|++++|.++.+|. +. ++|++|++++ |.++.+|. +.. +| +.|++++|.
T Consensus 149 ~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 149 NNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC----------CCEEEECCSSC
T ss_pred CCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhcccccceEEecCCCc
Confidence 999998544 68899999999999999998 65 8999999999 57888876 443 66 999999998
Q ss_pred CccccCCCccchHhhcCCCCCCEEEccC
Q 002133 664 TRKVEGQSNASVVELKQLSSLTILDMHI 691 (961)
Q Consensus 664 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 691 (961)
+..+| ..+..+++|+.|+++.
T Consensus 219 l~~lp-------~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 219 ITHIP-------ENILSLDPTCTIILED 239 (571)
T ss_dssp CCCCC-------GGGGGSCTTEEEECCS
T ss_pred ceecC-------HHHhcCCCCCEEEeeC
Confidence 88777 3555677888888763
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=6.1e-13 Score=126.69 Aligned_cols=130 Identities=23% Similarity=0.198 Sum_probs=109.7
Q ss_pred CCCceeEEEecCCCCC--CCCccccCCcCCCEEEccCCCCCCCccccCCCCCcEEEeccCcCCc-cchhhhcCCCcCEEe
Q 002133 557 GMTELLVLHLTGIHFP--SLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQ-LPEQIGNLTRLKLLD 633 (961)
Q Consensus 557 ~l~~L~~L~L~~~~~~--~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~ 633 (961)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++....++.+++|++|++++|.++. +|..++.+++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 4578999999999998 8899999999999999999999998889999999999999999997 888888899999999
Q ss_pred cCCCCCCcccC-hHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEcc
Q 002133 634 LSNCSKLKVIK-PEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 634 l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
+++ +.++.++ +..++.+++|++|++++|.+..++. .....+..+++|+.|+++
T Consensus 95 ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND---YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT---HHHHHHHHCTTCCEETTB
T ss_pred CCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccchHH---HHHHHHHHCCCcccccCC
Confidence 999 5677764 2458999999999999997765542 111346667777777653
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=3e-13 Score=132.84 Aligned_cols=131 Identities=16% Similarity=0.118 Sum_probs=92.7
Q ss_pred ccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC-Ccc-ccCCCCCc
Q 002133 530 SLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VAR-VGDLAKLE 607 (961)
Q Consensus 530 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~-~~~l~~L~ 607 (961)
..++++|+.|++++|.+. .+|. +....++|++|++++|.++.+ ..++.+++|++|++++|.++. ++. +..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 346677777777777776 3443 333344788888888877766 567778888888888888777 333 47778888
Q ss_pred EEEeccCcCCccch--hhhcCCCcCEEecCCCCCCcccChH---HHhcCccCCEEEccCCCC
Q 002133 608 ILSFRNSHIEQLPE--QIGNLTRLKLLDLSNCSKLKVIKPE---VISRLSRLNELYMGNSFT 664 (961)
Q Consensus 608 ~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~~~~~---~l~~l~~L~~L~l~~~~~ 664 (961)
+|++++|.++.+|. .+..+++|++|++++ +.+..+|.. .+..+++|+.|++++|..
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888877776 677788888888887 456666653 467788888888777643
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=130.16 Aligned_cols=122 Identities=18% Similarity=0.309 Sum_probs=81.6
Q ss_pred EEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEeccCc
Q 002133 538 LFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSH 615 (961)
Q Consensus 538 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~ 615 (961)
++++++|.+. .+|..+ .++|++|++++|.++.+|..+..+++|++|+|++|.++. +..|.++++|++|+|++|.
T Consensus 14 ~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4555555544 445433 246677777777777777667777777777777777766 2457777777777777777
Q ss_pred CCccch-hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCC
Q 002133 616 IEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFT 664 (961)
Q Consensus 616 l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 664 (961)
++.+|. .+.++++|++|++++ |.++.+|+..+..+++|++|++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 776654 367777777777777 566677766667777777777777643
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=3.5e-14 Score=165.67 Aligned_cols=171 Identities=20% Similarity=0.216 Sum_probs=114.5
Q ss_pred cCCCcEEecCCCCCCCCCCcc-CCCceeEEEeccCC-------------CCCCCChhhhhCC------------------
Q 002133 511 RKNPTAISIPFRDISELPDSL-QCTRLKLFLLFTED-------------SSLQIPNQFFDGM------------------ 558 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l~~n~-------------~~~~~~~~~~~~l------------------ 558 (961)
.+.+++|+++.|.+..+|..+ +|++|+.|++++|. ..+..|.. ++++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-LQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-HHHHHHHHHHCGGGHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-HHHHHhcccCcchhhcccchhh
Confidence 456777888888887787766 77788877775543 22222221 1222
Q ss_pred --------------CceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC-CccccCCCCCcEEEeccCcCCccchhh
Q 002133 559 --------------TELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQI 623 (961)
Q Consensus 559 --------------~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~ 623 (961)
..|++|+|++|.++.+|. ++.+++|++|+|++|.++. |..++++++|++|+|++|.++.+| .+
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l 504 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV 504 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc
Confidence 246677888887777776 7778888888888887777 577778888888888888777777 67
Q ss_pred hcCCCcCEEecCCCCCCcccC-hHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEE
Q 002133 624 GNLTRLKLLDLSNCSKLKVIK-PEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILD 688 (961)
Q Consensus 624 ~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 688 (961)
+++++|++|++++ |.++.++ |..++.+++|++|++++|.+..++.... .-+..+++|+.|+
T Consensus 505 ~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~---~l~~~lp~L~~L~ 566 (567)
T 1dce_A 505 ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE---RLAEMLPSVSSIL 566 (567)
T ss_dssp TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT---HHHHHCTTCSEEE
T ss_pred CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH---HHHHHCcccCccC
Confidence 7788888888877 4666663 3447778888888888776665543111 2223355555554
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=1e-12 Score=158.40 Aligned_cols=151 Identities=16% Similarity=0.210 Sum_probs=93.2
Q ss_pred cCCCcEEecCCCCCCCCCCcc-CCCceeEEEe-----ccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCC
Q 002133 511 RKNPTAISIPFRDISELPDSL-QCTRLKLFLL-----FTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINL 584 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~-~~~~L~~L~l-----~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L 584 (961)
...+++|++..|.+...+... ....|+.+.+ ..|.+. +++..+..+++|++|+|++|.+..+|..+..+++|
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 345788888888876665443 3333333333 233332 45556688889999999999888888888889999
Q ss_pred CEEEccCCCCCC-CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCC
Q 002133 585 RTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (961)
Q Consensus 585 ~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 663 (961)
++|+|++|.++. |..|++|++|++|+|++|.|+.+|..+++|++|++|+|++ |.++.+|.. |++|++|++|+|++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCc
Confidence 999999998887 6778889999999999998888888888999999999988 577888876 8889999999998887
Q ss_pred Cc
Q 002133 664 TR 665 (961)
Q Consensus 664 ~~ 665 (961)
+.
T Consensus 328 l~ 329 (727)
T 4b8c_D 328 LE 329 (727)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=3.7e-12 Score=126.88 Aligned_cols=122 Identities=17% Similarity=0.299 Sum_probs=77.6
Q ss_pred cEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCC
Q 002133 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH 593 (961)
Q Consensus 515 ~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 593 (961)
+.++++++.+..+|..+. .+|+.|++++|.+.+..+..+|.++++|++|+|++|.++.+ |..|..+++|++|+|++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 567777777777776442 26677777777665433334456677777777777777655 5566667777777777776
Q ss_pred CCC--CccccCCCCCcEEEeccCcCCcc-chhhhcCCCcCEEecCCC
Q 002133 594 LED--VARVGDLAKLEILSFRNSHIEQL-PEQIGNLTRLKLLDLSNC 637 (961)
Q Consensus 594 l~~--~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~ 637 (961)
+++ +..+.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 666 23466666666666666666644 444666666666666664
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=1.7e-12 Score=129.38 Aligned_cols=124 Identities=16% Similarity=0.232 Sum_probs=103.9
Q ss_pred eEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCcc--ccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEec
Q 002133 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS--LGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFR 612 (961)
Q Consensus 537 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~--~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~ 612 (961)
+++++++|.+. .+|..++ .+|++|++++|.+..++.. ++.+++|++|+|++|.+++ +..+.++++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 68889988885 7777553 4889999999999988653 8899999999999999988 4788999999999999
Q ss_pred cCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCc
Q 002133 613 NSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 613 ~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
+|.++.++.. +.++++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999977654 88899999999999 5777776666889999999999988544
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.9e-12 Score=127.03 Aligned_cols=131 Identities=18% Similarity=0.277 Sum_probs=108.2
Q ss_pred hhCCCceeEEEecCCCCCCCCccccCCc-CCCEEEccCCCCCCCccccCCCCCcEEEeccCcCCccchhh-hcCCCcCEE
Q 002133 555 FDGMTELLVLHLTGIHFPSLPLSLGSLI-NLRTLSFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQI-GNLTRLKLL 632 (961)
Q Consensus 555 ~~~l~~L~~L~L~~~~~~~lp~~~~~l~-~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L 632 (961)
+.++.+|++|++++|.++.+|. +..+. +|++|++++|.++++..++.+++|++|++++|.++.+|..+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3578899999999999998875 45554 99999999999999888999999999999999999998664 899999999
Q ss_pred ecCCCCCCcccCh-HHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEcc
Q 002133 633 DLSNCSKLKVIKP-EVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 633 ~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
++++ +.++.+|. ..+..+++|++|++++|.+..++. .....+..+++|+.|+++
T Consensus 94 ~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~---~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 94 ILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNKKH---YRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp ECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT---HHHHHHHHCTTCSEETTE
T ss_pred ECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh---HHHHHHHHCCccceeCCC
Confidence 9999 57788875 348899999999999998776552 111235666777777665
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.2e-11 Score=123.08 Aligned_cols=121 Identities=19% Similarity=0.305 Sum_probs=108.0
Q ss_pred cEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCEEEccCCC
Q 002133 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCH 593 (961)
Q Consensus 515 ~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~ 593 (961)
+.++++++.+..+|..+ .++|+.|++++|.+. .+|. .|.++++|++|+|++|.++.++ ..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57889999999999765 468999999999997 7775 4689999999999999999885 569999999999999999
Q ss_pred CCC--CccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCC
Q 002133 594 LED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCS 638 (961)
Q Consensus 594 l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 638 (961)
++. +..|..+++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 998 35799999999999999999999875 8899999999999954
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=6.8e-11 Score=132.15 Aligned_cols=244 Identities=16% Similarity=0.113 Sum_probs=159.3
Q ss_pred cccCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC----C--CCEEEEEEecCCC-CHHHH
Q 002133 152 VHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKED----L--FDVVVDAEVTHTP-DWKEI 220 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~--f~~~~wv~~~~~~-~~~~~ 220 (961)
..++||+++++++.+++. ....+.+.|+|++|+||||+|+.+++...... . ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 678999999999887775 34467899999999999999999998864321 1 3356788887766 88888
Q ss_pred HHHHHHHh-CCCccC-CCCHHHHHHHHHHHHHcCCcEEEEEcccccccc--cccc-cCCCCCCCcccccCCCceEEEEEe
Q 002133 221 CGRIADQL-GLEIVR-PDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDI-GIPFWDGEKQSVDNQGRWTLLLAS 295 (961)
Q Consensus 221 ~~~i~~~l-~~~~~~-~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l-~~~~~~~~~~~~~~~~gs~IlvTt 295 (961)
+..++.++ +..... ..+.......+.+.+.. ++.+|||||++.... +... ...+.. ...+..||+||
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~-------~~~~~~iI~~t 171 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLR-------SDANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHT-------SSSCEEEEEEC
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhc-------CCcceEEEEEE
Confidence 88888887 332211 11335566777777765 344999999987532 1111 111111 11578899999
Q ss_pred cchhhh-----hhcCCCCceEEccCCCHHHHHHHHHHHhCC-CCCCCchhHHHHHHHHhhC---CchH-HHHHHHHHhc-
Q 002133 296 RDQHVL-----RINMSNPRIFSISTLADGEAKSLFEKIVGD-SAKESDCRAIGVEIVGKCG---GLPI-AVSTIANALK- 364 (961)
Q Consensus 296 R~~~v~-----~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~~~L~- 364 (961)
+..... .....-...+.+++++.++..+++..++.. -....-..+..+.|++.++ |.|. |+..+-....
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 875321 000111238999999999999999987631 1011111245667888887 8876 4444433331
Q ss_pred -----cCChHHHHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHHHHHhcC
Q 002133 365 -----GQSTHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGL 416 (961)
Q Consensus 365 -----~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~ 416 (961)
..+.+.+..++.... ...+..++..|+++.+..+..++.
T Consensus 252 a~~~~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYE-------------QERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred hcCCCccCHHHHHHHHHHHh-------------cchHHHHHHcCCHHHHHHHHHHHH
Confidence 236677777766542 234667788899988888877776
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=9.1e-13 Score=158.75 Aligned_cols=143 Identities=22% Similarity=0.237 Sum_probs=98.4
Q ss_pred ecCCCCCCCCCCcc-CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC
Q 002133 518 SIPFRDISELPDSL-QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED 596 (961)
Q Consensus 518 ~l~~~~~~~lp~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~ 596 (961)
.+..|.+...+..+ .+++|+.|+|++|.+. .+|..++ ++++|++|+|++|.++.+|..|++|++|++|+|++|.++.
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 33344444334444 7788888888888876 6777764 7888888888888888888888888888888888888887
Q ss_pred -CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCcc-CCEEEccCCC
Q 002133 597 -VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSR-LNELYMGNSF 663 (961)
Q Consensus 597 -~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~-L~~L~l~~~~ 663 (961)
|..+++|++|++|+|++|.++.+|..+++|++|++|+|++ |.+...++..+..+.. +..|++++|.
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCc
Confidence 6778888888888888888888888888888888888888 4565555554543321 1234555553
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=7.1e-14 Score=140.27 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=59.3
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCCCccccCCCCCcEEEe
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSF 611 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l 611 (961)
.+++|++|++++|.+.+ +| .+.++++|++|++++|.++.+|..+..+++|++|++++|.+++++.+..+++|++|++
T Consensus 46 ~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM 122 (198)
T ss_dssp HTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred cCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence 55666666666665553 44 2355666666666666666565555555666666666666655445555666666666
Q ss_pred ccCcCCccch--hhhcCCCcCEEecCC
Q 002133 612 RNSHIEQLPE--QIGNLTRLKLLDLSN 636 (961)
Q Consensus 612 ~~~~l~~lp~--~~~~l~~L~~L~l~~ 636 (961)
++|.++.+|. .+..+++|++|++++
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 6666555543 455566666666655
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=2.5e-11 Score=119.19 Aligned_cols=120 Identities=22% Similarity=0.345 Sum_probs=53.4
Q ss_pred cEEecCCCCCCCCCCccCCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCcc-ccCCcCCCEEEccCCC
Q 002133 515 TAISIPFRDISELPDSLQCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLS-LGSLINLRTLSFDCCH 593 (961)
Q Consensus 515 ~~L~l~~~~~~~lp~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~-~~~l~~L~~L~L~~~~ 593 (961)
+.++++++.+..+|... .++|+.|++++|.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 34555555555554322 244555555555444 23333334445555555555544444322 3444444444444444
Q ss_pred CCC-C-ccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCC
Q 002133 594 LED-V-ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSN 636 (961)
Q Consensus 594 l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~ 636 (961)
++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 444 1 2234444444444444444444433 23344444444444
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=2.6e-11 Score=119.07 Aligned_cols=126 Identities=22% Similarity=0.337 Sum_probs=109.0
Q ss_pred ceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEccCCCCCC-C-ccccCCCCCcEEEe
Q 002133 535 RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED-V-ARVGDLAKLEILSF 611 (961)
Q Consensus 535 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l 611 (961)
..+.++++++.+. .+|..+ .++|++|++++|.+..+|. .++.+++|++|++++|.++. + ..+..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3567888888876 677544 4789999999999998865 47899999999999999998 3 45799999999999
Q ss_pred ccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCc
Q 002133 612 RNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 612 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
++|.++.+|.. +..+++|++|++++ +.++.+|+..+..+++|++|++++|.+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCee
Confidence 99999988876 68999999999999 5888999887789999999999999654
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=1.7e-11 Score=143.05 Aligned_cols=120 Identities=22% Similarity=0.295 Sum_probs=88.9
Q ss_pred eeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCCCccccCCCCCcEEEeccCc
Q 002133 536 LKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLEDVARVGDLAKLEILSFRNSH 615 (961)
Q Consensus 536 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~ 615 (961)
|+.|++++|.+.+ +|. ++++++|++|+|++|.++.+|..++.+++|++|+|++|.+++++.++++++|++|+|++|.
T Consensus 443 L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCC-CcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence 5566666666653 554 4677788888888888887888888888888888888888775578888888888888888
Q ss_pred CCcc--chhhhcCCCcCEEecCCCCCCcccChH---HHhcCccCCEEEc
Q 002133 616 IEQL--PEQIGNLTRLKLLDLSNCSKLKVIKPE---VISRLSRLNELYM 659 (961)
Q Consensus 616 l~~l--p~~~~~l~~L~~L~l~~~~~l~~~~~~---~l~~l~~L~~L~l 659 (961)
++.+ |..++++++|++|++++ |.++.+|+. .+..+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence 8877 77788888888888888 456666542 2445788888763
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=5.6e-12 Score=137.54 Aligned_cols=289 Identities=13% Similarity=0.082 Sum_probs=159.8
Q ss_pred CCCceeEEEecCCCCC-CCCccccC-CcCCCEEEccCCCCCCC-ccccCCCCCcEEEeccCcCCccchh-hhc-------
Q 002133 557 GMTELLVLHLTGIHFP-SLPLSLGS-LINLRTLSFDCCHLEDV-ARVGDLAKLEILSFRNSHIEQLPEQ-IGN------- 625 (961)
Q Consensus 557 ~l~~L~~L~L~~~~~~-~lp~~~~~-l~~L~~L~L~~~~l~~~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~------- 625 (961)
.+.+|+.|.++++--. .+ ..+.. +++|++|+|++|++... ..-+.++.+..+.+..+ .+|.. |.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEE
T ss_pred hhCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccc
Confidence 3567888888875211 11 12233 78899999999998831 11122233455555555 44443 566
Q ss_pred -CCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccCcchhccccccccc
Q 002133 626 -LTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHIPDAQLLLEDLISL 704 (961)
Q Consensus 626 -l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~L~~l 704 (961)
+++|+.|++.. .++.+++..|.++++|+.|++.+|.+..++. ..+..+.++..+.............+
T Consensus 99 g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~------~aF~~~~~l~~l~~~~~~~~~~~~~i--- 167 (329)
T 3sb4_A 99 GKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP------EALADSVTAIFIPLGSSDAYRFKNRW--- 167 (329)
T ss_dssp ECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECT------TSSCTTTCEEEECTTCTHHHHTSTTT---
T ss_pred ccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccch------hhhcCCCceEEecCcchhhhhccccc---
Confidence 89999999987 6888888889999999999999887766654 33444545544444321111111111
Q ss_pred cccceeEEEecccCCCCCCCccc-eEEecCCCcccchHHHHHh---hccccEEEcccccCcccccccccCCCCccCCcEE
Q 002133 705 DLERYRIFIGDVWNWSGKYECSR-TLKLKLDNSIYLGYGIKKL---LKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHL 780 (961)
Q Consensus 705 ~L~~~~i~~~~~~~~~~~~~~l~-~l~L~~~~~~~~~~~~~~~---l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L 780 (961)
....+..+ ..++ .+.+ .....++..+... ..++..+.+.+.-...... .+ ...+++|+.|
T Consensus 168 --~~~~f~~~---------~~L~~~i~~--~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~-~l--~~~~~~L~~l 231 (329)
T 3sb4_A 168 --EHFAFIEG---------EPLETTIQV--GAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFK-LI--RDYMPNLVSL 231 (329)
T ss_dssp --TTSCEEES---------CCCEEEEEE--CTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHH-HH--HHHCTTCCEE
T ss_pred --cccccccc---------cccceeEEe--cCCCcHHHHHhhcccCccccceEEEeeeecHHHHH-HH--HHhcCCCeEE
Confidence 11111000 0011 1111 1111222222211 3455555555432111111 00 0235677777
Q ss_pred EeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCcc-EEEeecCCCCcccCChHHHhhccc
Q 002133 781 HVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLR-IINIEQCHRLKHLFPSFMAEKLLQ 859 (961)
Q Consensus 781 ~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~L~~l~~~~~~~~l~~ 859 (961)
+|++| .++.++.. .+..+++|+.|.+.+ +++.+....| ..+++|+ .|.+.+ +++.+++.. +.+|++
T Consensus 232 ~L~~n-~i~~I~~~-aF~~~~~L~~l~l~~--ni~~I~~~aF------~~~~~L~~~l~l~~--~l~~I~~~a-F~~c~~ 298 (329)
T 3sb4_A 232 DISKT-NATTIPDF-TFAQKKYLLKIKLPH--NLKTIGQRVF------SNCGRLAGTLELPA--SVTAIEFGA-FMGCDN 298 (329)
T ss_dssp ECTTB-CCCEECTT-TTTTCTTCCEEECCT--TCCEECTTTT------TTCTTCCEEEEECT--TCCEECTTT-TTTCTT
T ss_pred ECCCC-CcceecHh-hhhCCCCCCEEECCc--ccceehHHHh------hCChhccEEEEEcc--cceEEchhh-hhCCcc
Confidence 77765 35555544 566677777777765 2666655444 5577777 777776 677775544 377788
Q ss_pred ccEEeEeccccccccccccccCCccCCCcccccccccccceec
Q 002133 860 LEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLAL 902 (961)
Q Consensus 860 L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l 902 (961)
|+.|+++++ .++.|. +..+.++++|+.++.
T Consensus 299 L~~l~l~~n-~i~~I~------------~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATGD-KITTLG------------DELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECSS-CCCEEC------------TTTTCTTCCCCEEEC
T ss_pred CCEEEeCCC-ccCccc------------hhhhcCCcchhhhcc
Confidence 888887665 566663 345567778877763
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=2.1e-10 Score=128.22 Aligned_cols=248 Identities=15% Similarity=0.121 Sum_probs=156.8
Q ss_pred ccccCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC-CCEEEEEEecCCCCHHHHHHHHH
Q 002133 151 YVHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL-FDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
+..|+||+++++.+.+++. ....+.+.|+|++|+||||||+.+++....... -...+|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999887 345678999999999999999999988754311 23567888777777788888888
Q ss_pred HHhCCCccCC-CCHHHHHHHHHHHHHc-CCcEEEEEccccccccc--ccccCCC---CCCCcccccCCCceEEEEEecch
Q 002133 226 DQLGLEIVRP-DSLVEKANQLRQALKK-KKRVLVILDDIWTQINL--DDIGIPF---WDGEKQSVDNQGRWTLLLASRDQ 298 (961)
Q Consensus 226 ~~l~~~~~~~-~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~--~~l~~~~---~~~~~~~~~~~~gs~IlvTtR~~ 298 (961)
.+++...... .+..+....+.+.+.. +++.+||||+++..... ......+ .+ .. ...+..+|+||+..
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~----~~-~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINS----EV-NKSKISFIGITNDV 173 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHH----SC-CC--EEEEEEESCG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchh----hc-CCCeEEEEEEECCC
Confidence 8776543221 2355556777777764 34899999999775321 1110000 10 00 13356678888765
Q ss_pred hhhhh------cCCCCceEEccCCCHHHHHHHHHHHhCC-CCCCCchhHHHHHHHHhhC---CchHHHHH-HHHHhc---
Q 002133 299 HVLRI------NMSNPRIFSISTLADGEAKSLFEKIVGD-SAKESDCRAIGVEIVGKCG---GLPIAVST-IANALK--- 364 (961)
Q Consensus 299 ~v~~~------~~~~~~~~~l~~L~~~~s~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---glPLai~~-~~~~L~--- 364 (961)
..... ..-....+.+++++.++..+++...+.. .....-..+..+.+++.++ |.|..+.. +.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 43210 0011248999999999999999986531 1111122345667788777 99874433 332221
Q ss_pred --c---CChHHHHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHHHHHhcC
Q 002133 365 --G---QSTHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGL 416 (961)
Q Consensus 365 --~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~ 416 (961)
+ .+.+.++.++.... ...+.-++..+|+..+..+..++.
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~il~ai~~ 297 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPFHSKLVLMAVVS 297 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hcCCCccCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHH
Confidence 1 14555555555432 224556677888888887777764
No 145
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.24 E-value=2.2e-10 Score=128.20 Aligned_cols=292 Identities=15% Similarity=0.135 Sum_probs=178.3
Q ss_pred ccccCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCCEEEEEEecCCCCHHHHHH
Q 002133 151 YVHFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKE----DLFDVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~ 222 (961)
+..++||+++++++..++. ....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3678999999999999884 3456789999999999999999999876432 1122457888888888899999
Q ss_pred HHHHHhCCCccCC-CCHHHHHHHHHHHHHc-CCcEEEEEccccccccc----ccccCCC--CCCCcccccCCCceEEEEE
Q 002133 223 RIADQLGLEIVRP-DSLVEKANQLRQALKK-KKRVLVILDDIWTQINL----DDIGIPF--WDGEKQSVDNQGRWTLLLA 294 (961)
Q Consensus 223 ~i~~~l~~~~~~~-~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~----~~l~~~~--~~~~~~~~~~~~gs~IlvT 294 (961)
.++.+++...... .+..+....+.+.+.. +++.+|||||++..... +.+...+ .. ......+..+|+|
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~----~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQ----ELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGG----CC-----CEEEEE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchh----hcCCCceEEEEEE
Confidence 9999997654322 2355566777777743 45889999999765321 1111000 00 0000345678888
Q ss_pred ecchhhh-----hhcCCC-CceEEccCCCHHHHHHHHHHHhC---C-CCCCCchhHHHHHHHHhhC---CchH-HHHHHH
Q 002133 295 SRDQHVL-----RINMSN-PRIFSISTLADGEAKSLFEKIVG---D-SAKESDCRAIGVEIVGKCG---GLPI-AVSTIA 360 (961)
Q Consensus 295 tR~~~v~-----~~~~~~-~~~~~l~~L~~~~s~~Lf~~~~~---~-~~~~~~~~~~~~~i~~~c~---glPL-ai~~~~ 360 (961)
|+..... ...... ...+.+.+++.++..+++...+. . ...++ +..+.+++.++ |.|. ++.++.
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 8765221 110111 24789999999999999998753 1 12222 34567888887 9994 333333
Q ss_pred HHhc-----c---CChHHHHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHHHHHhc-CCCCCCCCChhhHHHH
Q 002133 361 NALK-----G---QSTHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCG-LLNDGSRLPIDDLIRY 431 (961)
Q Consensus 361 ~~L~-----~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~li~~ 431 (961)
.+.. + .+.+.+..++.... ...+.-++..|+++.+..+..++ ++.....+...++.+.
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~ 317 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYER 317 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 2221 1 15566666665432 22355678899998888777666 4432224545544443
Q ss_pred HHHh--CccccccchHHHHHHHHHHHHHHhhccccccc
Q 002133 432 VFAL--DNLFTGIDTLEVARNRVYTLMDHLKGPCLLLN 467 (961)
Q Consensus 432 w~a~--g~~~~~~~~~~~~~~~~~~~i~~L~~~~l~~~ 467 (961)
.... . .-... .+...+.++++.|...+++..
T Consensus 318 ~~~~~~~-~~~~~----~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 318 YKELTST-LGLEH----VTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHHH-TTCCC----CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHh-cCCCC----CCHHHHHHHHHHHHhCCCeEE
Confidence 2221 1 00001 112345566777888888864
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=2.8e-13 Score=135.93 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=110.0
Q ss_pred hhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC-CccccCCCCCcEEEeccCcCCccchhhhcCCCcCEE
Q 002133 554 FFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED-VARVGDLAKLEILSFRNSHIEQLPEQIGNLTRLKLL 632 (961)
Q Consensus 554 ~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 632 (961)
.+..+++|++|++++|.++.+| .+..+++|++|++++|.++. +..+..+++|++|++++|.++.+| .+.++++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 4588999999999999999999 89999999999999999988 566777899999999999999988 68999999999
Q ss_pred ecCCCCCCcccCh-HHHhcCccCCEEEccCCCCccccCC----CccchHhhcCCCCCCEEEcc
Q 002133 633 DLSNCSKLKVIKP-EVISRLSRLNELYMGNSFTRKVEGQ----SNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 633 ~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~l~~l~~L~~L~l~ 690 (961)
++++ +.++.++. ..+..+++|++|++++|.+...... .......+..+++|+.|+..
T Consensus 121 ~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 121 YMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp EESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred ECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence 9999 57777665 4588999999999999976433211 11112346778889988743
No 147
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.20 E-value=1.2e-09 Score=122.13 Aligned_cols=293 Identities=15% Similarity=0.088 Sum_probs=178.5
Q ss_pred cccCCchHHHHHHHHHhcc----CCcc--EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLRD----SNVN--MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
..++||+++++++.+++.. .... .+.|+|++|+||||+|+.+++...... -..++|++++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5689999999999888863 3334 899999999999999999998875321 13567888888888889999999
Q ss_pred HHhCCCccCC-CCHHHHHHHHHHHHHc-CCcEEEEEccccccc--ccccccCCCCCCCcccccC--CCceEEEEEecchh
Q 002133 226 DQLGLEIVRP-DSLVEKANQLRQALKK-KKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDN--QGRWTLLLASRDQH 299 (961)
Q Consensus 226 ~~l~~~~~~~-~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~--~~gs~IlvTtR~~~ 299 (961)
..++...... .+.......+.+.+.. +++.+|||||++... ....+...+.. ... ..+..||+||+...
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~-----~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQE-----ADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTC-----HHHHSSCCEEEEEEESSTH
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHh-----CCCCCcCCEEEEEEECCch
Confidence 9887653322 2455666666666653 457899999997752 12222111100 001 14667888887653
Q ss_pred hhhhcC------CCCceEEccCCCHHHHHHHHHHHhCCC-CCCCchhHHHHHHHHhh---------CCchHHHHHHHHH-
Q 002133 300 VLRINM------SNPRIFSISTLADGEAKSLFEKIVGDS-AKESDCRAIGVEIVGKC---------GGLPIAVSTIANA- 362 (961)
Q Consensus 300 v~~~~~------~~~~~~~l~~L~~~~s~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c---------~glPLai~~~~~~- 362 (961)
...... -....+.+.+++.++..+++...+... ....--.+..+.|++.+ +|.|..+..+...
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 321100 012369999999999999998876420 01111235677899999 7887544433322
Q ss_pred hc-----cCChHHHHHHHHHHHhcCCCcccccccccchhHhhhhcCcHhHHHHHHHhcCCC---CCCCCChhhHHHHHHH
Q 002133 363 LK-----GQSTHVWKDAINWLRKSNPRKIKGMDADLSSIELSYKVLEPEAQFLFQLCGLLN---DGSRLPIDDLIRYVFA 434 (961)
Q Consensus 363 L~-----~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~li~~w~a 434 (961)
.. +...-.++.+...+.... ...+.-.+..|+++.+.++..++.+. .+..+....+...+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 21 222122223322222211 23345567889999888888777654 2224555666554433
Q ss_pred h----CccccccchHHHHHHHHHHHHHHhhccccccc
Q 002133 435 L----DNLFTGIDTLEVARNRVYTLMDHLKGPCLLLN 467 (961)
Q Consensus 435 ~----g~~~~~~~~~~~~~~~~~~~i~~L~~~~l~~~ 467 (961)
. | ..+ .....+..++..|...+++..
T Consensus 321 ~~~~~~-~~~------~~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 321 VCEEYG-ERP------RVHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHHTT-CCC------CCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHcC-CCC------CCHHHHHHHHHHHHhCCCeEE
Confidence 1 1 111 012345566778888888854
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=3.4e-10 Score=117.65 Aligned_cols=200 Identities=15% Similarity=0.184 Sum_probs=116.7
Q ss_pred CCccccCCchHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
.....++||+++++.+..++.... .+.+.|+|++|+||||+|+.+++.......+.. ........ ...+...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~ 92 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQG 92 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTT
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhcc
Confidence 345679999999999999987543 357899999999999999999987753221100 00000000 0001000
Q ss_pred hCCC---cc-CCCCHHHHHHHHHHHHH----cCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEEEecc
Q 002133 228 LGLE---IV-RPDSLVEKANQLRQALK----KKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (961)
Q Consensus 228 l~~~---~~-~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~ 297 (961)
.... .. ......+....+.+.+. .+++.+||+||++.. ..++.+...+.. ...+..+|+||+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~-------~~~~~~~i~~t~~ 165 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLATTD 165 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS-------CCTTEEEEEEESC
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc-------CCCceEEEEEeCC
Confidence 0000 00 00011111122222211 235799999999764 233333222222 3457788888876
Q ss_pred hhhh-hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHh
Q 002133 298 QHVL-RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (961)
Q Consensus 298 ~~v~-~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 363 (961)
.... .........+.+.+++.++..+++...+....... -.+..+.|++.++|.|..+..+...+
T Consensus 166 ~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 166 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5432 11122346899999999999999998775322111 13457789999999999987776544
No 149
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.16 E-value=4.9e-10 Score=114.59 Aligned_cols=189 Identities=12% Similarity=0.093 Sum_probs=117.8
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL 228 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 228 (961)
.....++||++.++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 44567899999999999999876665699999999999999999998764322112234444444433333322222111
Q ss_pred CCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecchhhh-hhcC
Q 002133 229 GLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-RINM 305 (961)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~-~~~~ 305 (961)
.... ...+++.+||+||++... ..+.+...+.. ...+.++|+||+..... ....
T Consensus 94 ~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~-------~~~~~~~i~~~~~~~~~~~~l~ 150 (226)
T 2chg_A 94 RTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEM-------YSKSCRFILSCNYVSRIIEPIQ 150 (226)
T ss_dssp TSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGGGSCHHHH
T ss_pred cccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHh-------cCCCCeEEEEeCChhhcCHHHH
Confidence 1100 001467999999997752 22222211111 24567888888765422 1112
Q ss_pred CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHH
Q 002133 306 SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIAN 361 (961)
Q Consensus 306 ~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 361 (961)
.....+.+.+++.++..+++...+....... -.+..+.|++.++|.|..+..+..
T Consensus 151 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCceeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2234899999999999999998774211111 134567899999999986554443
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=1.4e-10 Score=113.15 Aligned_cols=101 Identities=22% Similarity=0.372 Sum_probs=69.1
Q ss_pred eEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCC
Q 002133 562 LVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCS 638 (961)
Q Consensus 562 ~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 638 (961)
+.+++++|.+..+|..+. ++|++|+|++|.+++ +..|.++++|++|+|++|.++.+|.. +.++++|++|++++ |
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 566677776666666553 667777777777666 34566777777777777777777665 46777777777777 5
Q ss_pred CCcccChHHHhcCccCCEEEccCCCCc
Q 002133 639 KLKVIKPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 639 ~l~~~~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
.++.+|+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666776665677777777777777544
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.5e-10 Score=112.40 Aligned_cols=102 Identities=21% Similarity=0.300 Sum_probs=69.3
Q ss_pred eeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCC
Q 002133 561 LLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNC 637 (961)
Q Consensus 561 L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~ 637 (961)
.+.+++++|.++.+|..+. ++|++|+|++|.++. +..|.++++|++|+|++|.++.+|.. +.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 3566777777766666552 667777777777666 34567777777777777777766655 46777777777777
Q ss_pred CCCcccChHHHhcCccCCEEEccCCCCc
Q 002133 638 SKLKVIKPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 638 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
|.++.+++..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5666676666677777777777776543
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=4.8e-10 Score=109.24 Aligned_cols=96 Identities=24% Similarity=0.347 Sum_probs=56.7
Q ss_pred eEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCCCCC-C-ccccCCCCCcEEEecc
Q 002133 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED-V-ARVGDLAKLEILSFRN 613 (961)
Q Consensus 537 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~ 613 (961)
+.+++++|.+. .+|..+ .++|++|+|++|.+..+ |..|.++++|++|+|++|+++. + ..+.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34555555543 444433 25566666666666655 4456666666666666666666 2 2345666666666666
Q ss_pred CcCCccchh-hhcCCCcCEEecCC
Q 002133 614 SHIEQLPEQ-IGNLTRLKLLDLSN 636 (961)
Q Consensus 614 ~~l~~lp~~-~~~l~~L~~L~l~~ 636 (961)
|.++.+|.. +..+++|++|++++
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CccceeCHHHhccccCCCEEEeCC
Confidence 666666654 66666666666666
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=9.9e-10 Score=106.66 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=54.8
Q ss_pred eEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCCCCC-C-ccccCCCCCcEEEecc
Q 002133 537 KLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED-V-ARVGDLAKLEILSFRN 613 (961)
Q Consensus 537 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~ 613 (961)
+.+++++|.+. .+|..+ .++|++|+|++|.++.+ |..|..+++|++|+|++|+++. + ..+.++++|++|+|++
T Consensus 12 ~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34455554443 344333 24556666666666655 4445666666666666666655 2 3345666666666666
Q ss_pred CcCCccchh-hhcCCCcCEEecCC
Q 002133 614 SHIEQLPEQ-IGNLTRLKLLDLSN 636 (961)
Q Consensus 614 ~~l~~lp~~-~~~l~~L~~L~l~~ 636 (961)
|.++.+|.. +.++++|++|++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCC
Confidence 666666553 56666666666666
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=4.6e-10 Score=122.28 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=124.6
Q ss_pred cCCCcEEecCCCCCC--------------------CCCCcc--C--------CCceeEEEeccCCCCCCCChhhhhCCCc
Q 002133 511 RKNPTAISIPFRDIS--------------------ELPDSL--Q--------CTRLKLFLLFTEDSSLQIPNQFFDGMTE 560 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~--------------------~lp~~~--~--------~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 560 (961)
..+++.|++++|.+. .+|... + |++|+.|.+.. .+. .++...|.+|++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 456777777777665 334333 5 78888888887 554 677777888888
Q ss_pred eeEEEecCCCCCCC-CccccCCcCCCEEEccCCC-------CCC--------Cc--------------------------
Q 002133 561 LLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH-------LED--------VA-------------------------- 598 (961)
Q Consensus 561 L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~-------l~~--------~~-------------------------- 598 (961)
|+.|++++|.+..+ +..|..+.++.++.+..+. +.. +.
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 88888888887766 3446666666666554411 000 00
Q ss_pred --------------cc-cCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCC-EEEccC
Q 002133 599 --------------RV-GDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLN-ELYMGN 661 (961)
Q Consensus 599 --------------~~-~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~-~L~l~~ 661 (961)
.+ ..+++|+.|++++|.++.+|.. |.++++|+.|++.++ ++.++...|.++++|+ .+.+.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc
Confidence 00 0267889999998888888775 788889999998873 8888888888898898 888877
Q ss_pred CCCccccCCCccchHhhcCCCCCCEEEcc------C-cchhccccccccc
Q 002133 662 SFTRKVEGQSNASVVELKQLSSLTILDMH------I-PDAQLLLEDLISL 704 (961)
Q Consensus 662 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~------~-~~~~~~~~~L~~l 704 (961)
.+..++. ..+.++++|+.+++. + ...+..+++|+.+
T Consensus 284 -~l~~I~~------~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 284 -SVTAIEF------GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp -TCCEECT------TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred -cceEEch------hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 4555553 467788888888873 1 2345555555543
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=7.6e-09 Score=112.35 Aligned_cols=190 Identities=15% Similarity=0.155 Sum_probs=116.3
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL 228 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 228 (961)
.....++||+..++.+.+++.....+.+.|+|++|+||||+|+.+++...........++++.+.......+ ++++..+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 96 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHF 96 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHH
Confidence 445679999999999999998766666999999999999999999988643211112344544443332222 2222211
Q ss_pred CCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecchhhh-hhcC
Q 002133 229 GLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-RINM 305 (961)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~-~~~~ 305 (961)
..... .+..+++.+||+||++... .++.+...+.. ...++++|+||+..... ....
T Consensus 97 ~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-------~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 97 AQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMEL-------YSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp HHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH-------TTTTEEEEEEESCGGGSCHHHH
T ss_pred Hhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhc-------cCCCceEEEEeCChhhchhHHH
Confidence 10000 0002357899999998742 23333222211 23567888888664322 1112
Q ss_pred CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH-HHHHHHH
Q 002133 306 SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVSTIAN 361 (961)
Q Consensus 306 ~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 361 (961)
.....+.+.+++.++..+++...+....... -.+....|++.++|.|. |+..+..
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2335899999999999999998764221111 13456789999999995 4444443
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.89 E-value=3.1e-08 Score=110.10 Aligned_cols=120 Identities=16% Similarity=0.169 Sum_probs=69.0
Q ss_pred CceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCCc-cccCCcCCCEEEccCCCCCC--CccccCCCCCcEEE
Q 002133 534 TRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLPL-SLGSLINLRTLSFDCCHLED--VARVGDLAKLEILS 610 (961)
Q Consensus 534 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~ 610 (961)
..++.+.+..+ +. .++...|.++ +|+.+.+..+ ++.++. .|.++ +|+.+.+.. +++. ...|.+|.+|+.++
T Consensus 113 ~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 44444444332 22 3445555554 5666666554 555532 34443 566666664 4444 35566677777777
Q ss_pred eccCcCCccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccC
Q 002133 611 FRNSHIEQLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGN 661 (961)
Q Consensus 611 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 661 (961)
+.+|.++.+|.......+|+.+.+.. .++.++...|.++++|+.+.+.+
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT
T ss_pred cCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC
Confidence 77666666666544456677776654 36666666666666666666654
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=4.8e-08 Score=108.62 Aligned_cols=161 Identities=12% Similarity=0.181 Sum_probs=118.4
Q ss_pred CCCcEEecCCCCCCCCCCcc--CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCEEE
Q 002133 512 KNPTAISIPFRDISELPDSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLS 588 (961)
Q Consensus 512 ~~l~~L~l~~~~~~~lp~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~ 588 (961)
..+..+.+. +.+..++... ++ +|+.+.+..+ +. .++...|.++ +|+.+.+.. .+..++ ..|.+|.+|+.++
T Consensus 113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 556667766 4556665543 54 7999998766 43 6777777775 699999986 677774 5689999999999
Q ss_pred ccCCCCCC-C-ccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCc
Q 002133 589 FDCCHLED-V-ARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 589 L~~~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 665 (961)
+.+|+++. + ..|. +.+|+.+.+..+ ++.++.. +.++++|+.+++.. .++.++...|.+ .+|+.+.+.++ +.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-i~ 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-VT 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-CC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-cc
Confidence 99999888 3 4444 689999999854 7888665 88999999999987 478888877777 78999998553 44
Q ss_pred cccCCCccchHhhcCCCCCCEEEcc
Q 002133 666 KVEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 666 ~~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
.++. ..+.++++|+.+.+.
T Consensus 261 ~I~~------~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 261 NIAS------RAFYYCPELAEVTTY 279 (401)
T ss_dssp EECT------TTTTTCTTCCEEEEE
T ss_pred EECh------hHhhCCCCCCEEEeC
Confidence 4442 345666666666553
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=1.1e-09 Score=120.57 Aligned_cols=157 Identities=11% Similarity=0.005 Sum_probs=117.0
Q ss_pred hhcCCCcEEecCCCCCCCCC-----Ccc--CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-----Cc
Q 002133 509 AARKNPTAISIPFRDISELP-----DSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-----PL 576 (961)
Q Consensus 509 ~~~~~l~~L~l~~~~~~~lp-----~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-----p~ 576 (961)
.....++.|++++|.+.... ..+ .+++|+.|+|++|.+.......+...+++|++|+|++|.++.. ..
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 45678999999999986432 111 3479999999999886544455556678999999999998732 22
Q ss_pred cc-cCCcCCCEEEccCCCCCC--C----ccccCCCCCcEEEeccCcCCc-----cchhhhcCCCcCEEecCCCCCCcccC
Q 002133 577 SL-GSLINLRTLSFDCCHLED--V----ARVGDLAKLEILSFRNSHIEQ-----LPEQIGNLTRLKLLDLSNCSKLKVIK 644 (961)
Q Consensus 577 ~~-~~l~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~~~ 644 (961)
.+ ...++|++|+|++|.+++ . ..+..+++|++|+|++|.++. ++..+...++|++|+|++| .++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHH
Confidence 22 356889999999999876 2 445778999999999998873 3556778889999999995 565432
Q ss_pred h----HHHhcCccCCEEEccCCCCcc
Q 002133 645 P----EVISRLSRLNELYMGNSFTRK 666 (961)
Q Consensus 645 ~----~~l~~l~~L~~L~l~~~~~~~ 666 (961)
. ..+...++|++|++++|.+..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 2 225567899999999997653
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.1e-08 Score=112.45 Aligned_cols=96 Identities=25% Similarity=0.243 Sum_probs=46.1
Q ss_pred EecCC-CCCCCCccccCCcCCCEEEccC-CCCCC-C-ccccCCCCCcEEEeccCcCCccch-hhhcCCCcCEEecCCCCC
Q 002133 565 HLTGI-HFPSLPLSLGSLINLRTLSFDC-CHLED-V-ARVGDLAKLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSK 639 (961)
Q Consensus 565 ~L~~~-~~~~lp~~~~~l~~L~~L~L~~-~~l~~-~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~ 639 (961)
+++++ .++.+|. +..+.+|++|+|++ |.++. + ..|++|++|++|+|++|.|+.+|. .|.+|++|++|+|++ |.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NA 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-Cc
Confidence 44444 4444554 55555555555553 44444 2 334555555555555555554433 244555555555555 34
Q ss_pred CcccChHHHhcCccCCEEEccCCC
Q 002133 640 LKVIKPEVISRLSRLNELYMGNSF 663 (961)
Q Consensus 640 l~~~~~~~l~~l~~L~~L~l~~~~ 663 (961)
++.+|+..+..++ |+.|++.+|.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSC
T ss_pred cceeCHHHcccCC-ceEEEeeCCC
Confidence 4445444333333 5555555543
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=2.4e-08 Score=108.63 Aligned_cols=185 Identities=13% Similarity=0.106 Sum_probs=113.3
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL 228 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 228 (961)
.....++|+++.++.+..++.....+.+.++|++|+||||+|+.+++.......-...+.++.+....... .+.
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~----- 95 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV-IRE----- 95 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT-THH-----
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH-HHH-----
Confidence 34567899999999999998877666699999999999999999998864221001123333322111111 011
Q ss_pred CCCccCCCCHHHHHHHHHHHH-----HcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecchhhh
Q 002133 229 GLEIVRPDSLVEKANQLRQAL-----KKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL 301 (961)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~l-----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~ 301 (961)
.+.+.. ..+++.++|+||++... .++.+...+.. ...++++|+||......
T Consensus 96 ---------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------~~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 96 ---------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM-------FSSNVRFILSCNYSSKI 153 (327)
T ss_dssp ---------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGGGS
T ss_pred ---------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh-------cCCCCeEEEEeCCcccc
Confidence 111111 11457899999998652 23333222211 24567888888764321
Q ss_pred -hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHH
Q 002133 302 -RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANA 362 (961)
Q Consensus 302 -~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 362 (961)
.........+.+.+++.++..+++...+....... -.+..+.|++.++|.|..+..+...
T Consensus 154 ~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 154 IEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-TEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp CHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEE-CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 11011224789999999999999988775332211 1345678999999999866544443
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.69 E-value=2.6e-07 Score=103.11 Aligned_cols=123 Identities=11% Similarity=0.216 Sum_probs=61.7
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCCC-ccccCCcCCCEEEccCCCCCC--CccccCCCCCcE
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEI 608 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~ 608 (961)
+|.+|+.+.+..+ +. .++...|.+|++|+.+++..+ ++.++ ..|.++.+|+.+.+..+ +.. ...|.++..+..
T Consensus 69 ~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred CCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 5666666666432 22 455555666666666666543 44442 33555666665554432 222 233333332222
Q ss_pred EEeccCcCCccc-hhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCC
Q 002133 609 LSFRNSHIEQLP-EQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS 662 (961)
Q Consensus 609 L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 662 (961)
.... .+..+. ..+.++++|+.+.+.. .+..++...|.++.+|+.+.+..+
T Consensus 145 ~~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 145 TIPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC
Confidence 2111 122222 2356666777776654 344555555666666776666544
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.69 E-value=3.8e-09 Score=116.30 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=108.1
Q ss_pred CCceeEEEeccCCCCCCCChhh---h-hCCCceeEEEecCCCCCC--CCccccCCcCCCEEEccCCCCCC--Cccc----
Q 002133 533 CTRLKLFLLFTEDSSLQIPNQF---F-DGMTELLVLHLTGIHFPS--LPLSLGSLINLRTLSFDCCHLED--VARV---- 600 (961)
Q Consensus 533 ~~~L~~L~l~~n~~~~~~~~~~---~-~~l~~L~~L~L~~~~~~~--lp~~~~~l~~L~~L~L~~~~l~~--~~~~---- 600 (961)
+++|+.|++++|.+.......+ + ...++|++|+|++|.++. +......+++|++|+|++|.+++ ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 5679999999999864322222 1 234799999999999873 23333456789999999999987 2333
Q ss_pred -cCCCCCcEEEeccCcCCc-----cchhhhcCCCcCEEecCCCCCCcccC----hHHHhcCccCCEEEccCCCCccccCC
Q 002133 601 -GDLAKLEILSFRNSHIEQ-----LPEQIGNLTRLKLLDLSNCSKLKVIK----PEVISRLSRLNELYMGNSFTRKVEGQ 670 (961)
Q Consensus 601 -~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~ 670 (961)
...++|++|+|++|.++. ++..+..+++|++|+|++| .++... ...+...++|++|++++|.++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-
Confidence 356889999999998874 5556688999999999995 565432 2336778899999999997653221
Q ss_pred CccchHhhcCCCCCCEEEcc
Q 002133 671 SNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 671 ~~~~~~~l~~l~~L~~L~l~ 690 (961)
......+...++|+.|+++
T Consensus 229 -~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 229 -LALARAAREHPSLELLHLY 247 (372)
T ss_dssp -HHHHHHHHHCSSCCEEECT
T ss_pred -HHHHHHHHhCCCCCEEecc
Confidence 1112334455666666665
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=2.8e-07 Score=102.85 Aligned_cols=296 Identities=16% Similarity=0.173 Sum_probs=173.0
Q ss_pred cCCCcEEecCCCCCCCCCCcc--CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEE
Q 002133 511 RKNPTAISIPFRDISELPDSL--QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTL 587 (961)
Q Consensus 511 ~~~l~~L~l~~~~~~~lp~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L 587 (961)
..+++.+.+. +.+..++... +|++|+.+.+..+ +. .++...|.++.+|+.+.+..+ +..+ ...|.++..+...
T Consensus 70 c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 70 CRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp CTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred CCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence 4578888887 4577776554 8999999999755 32 577778899999998877654 3433 3346666544444
Q ss_pred EccCCCCCCCccccCCCCCcEEEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCcc
Q 002133 588 SFDCCHLEDVARVGDLAKLEILSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRK 666 (961)
Q Consensus 588 ~L~~~~l~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 666 (961)
........+...|.++.+|+.+.+..+ +..++.. +.++.+|+.+.+.. .++.++...+.++..|+.+.+.++.. .
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~~~-~ 221 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNSLY-Y 221 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTTCC-E
T ss_pred cCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCCce-E
Confidence 333333223467889999999999765 4556544 77899999999876 47777777788999999888765422 1
Q ss_pred ccCCCccchHhhcCCCCCCEEEccC------cchhccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccch
Q 002133 667 VEGQSNASVVELKQLSSLTILDMHI------PDAQLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLG 740 (961)
Q Consensus 667 ~~~~~~~~~~~l~~l~~L~~L~l~~------~~~~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~ 740 (961)
+. .......+|+.+.+.- ...+..+..++...+..+.. .++
T Consensus 222 i~-------~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~--------------------------~i~ 268 (394)
T 4fs7_A 222 LG-------DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL--------------------------RIG 268 (394)
T ss_dssp EC-------TTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC--------------------------EEC
T ss_pred ee-------hhhcccCCCceEEECCCceecccccccccccceeEEcCCCcc--------------------------eee
Confidence 11 1122334566555431 01122222222222221111 111
Q ss_pred HHHHHhhccccEEEcccccCcccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceecccccccccccccc
Q 002133 741 YGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGS 820 (961)
Q Consensus 741 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 820 (961)
......+..++.+...... ++.. .+.++.+|+.+.+.++ ++.+... .+..+.+|+.+.+.+ +++.+...
T Consensus 269 ~~~F~~~~~l~~~~~~~~~----i~~~--~F~~~~~L~~i~l~~~--i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~ 337 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVI----VPEK--TFYGCSSLTEVKLLDS--VKFIGEE-AFESCTSLVSIDLPY--LVEEIGKR 337 (394)
T ss_dssp SCTTTTCTTCCEEEECSSE----ECTT--TTTTCTTCCEEEECTT--CCEECTT-TTTTCTTCCEECCCT--TCCEECTT
T ss_pred ccccccccccceeccCcee----eccc--cccccccccccccccc--cceechh-hhcCCCCCCEEEeCC--cccEEhHH
Confidence 1111122444544443321 1111 2356677777777543 5555443 555667777777743 35555444
Q ss_pred ccccccCcCcCCCccEEEeecCCCCcccCChHHHhhcccccEEeEec
Q 002133 821 QVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTD 867 (961)
Q Consensus 821 ~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~ 867 (961)
.+ ..+.+|+.+.+.. .++.+.... +.+|++|+.+++..
T Consensus 338 aF------~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 338 SF------RGCTSLSNINFPL--SLRKIGANA-FQGCINLKKVELPK 375 (394)
T ss_dssp TT------TTCTTCCEECCCT--TCCEECTTT-BTTCTTCCEEEEEG
T ss_pred hc------cCCCCCCEEEECc--cccEehHHH-hhCCCCCCEEEECC
Confidence 33 4567777777754 366665433 36777777777754
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=4.3e-08 Score=107.52 Aligned_cols=96 Identities=20% Similarity=0.140 Sum_probs=62.2
Q ss_pred EEeccC-CCCCCCChhhhhCCCceeEEEecC-CCCCCCC-ccccCCcCCCEEEccCCCCCC--CccccCCCCCcEEEecc
Q 002133 539 FLLFTE-DSSLQIPNQFFDGMTELLVLHLTG-IHFPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLAKLEILSFRN 613 (961)
Q Consensus 539 L~l~~n-~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~lp-~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~ 613 (961)
++++++ .+. .+|. +..+++|++|+|++ |.+..+| ..|+.|++|++|+|++|+|++ +..|.+|++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455555 444 4565 46666777777775 7776664 456777777777777777766 34567777777777777
Q ss_pred CcCCccchhhhcCCCcCEEecCCC
Q 002133 614 SHIEQLPEQIGNLTRLKLLDLSNC 637 (961)
Q Consensus 614 ~~l~~lp~~~~~l~~L~~L~l~~~ 637 (961)
|.|+.+|..+.....|+.|+|.+|
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred CccceeCHHHcccCCceEEEeeCC
Confidence 777777665443333777777774
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.65 E-value=2.9e-07 Score=99.54 Aligned_cols=185 Identities=12% Similarity=0.096 Sum_probs=112.2
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCH---HHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW---KEICGRIA 225 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~---~~~~~~i~ 225 (961)
.....++|+++.++.+.+++.....+.+.++|++|+|||++|+.+++.......-...+.++.+..... .+......
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHH
Confidence 445678999999999999987766656899999999999999999987632110011233444332111 11111111
Q ss_pred HHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecchhhh-h
Q 002133 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-R 302 (961)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~-~ 302 (961)
.... +..+++.++|+|+++... ..+.+...+.. ...+.++|+||...... .
T Consensus 94 ~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------~~~~~~~i~~~~~~~~l~~ 147 (319)
T 2chq_A 94 RTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEM-------YSKSCRFILSCNYVSRIIE 147 (319)
T ss_dssp HSCC-------------------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-------SSSSEEEEEEESCGGGSCH
T ss_pred hcCC-------------------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-------cCCCCeEEEEeCChhhcch
Confidence 0000 011457899999997652 22333222222 23567788887654321 1
Q ss_pred hcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHH
Q 002133 303 INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (961)
Q Consensus 303 ~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 360 (961)
........+.+.+++.++..+++...+.......+ .+....+++.++|.+..+....
T Consensus 148 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 148 PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT-EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC-HHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 11223358999999999999999887753322212 3456788999999997654433
No 166
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.59 E-value=6.2e-07 Score=94.74 Aligned_cols=173 Identities=11% Similarity=0.110 Sum_probs=105.1
Q ss_pred ccCCchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC---C-C-EEEEEEecCCCCHHHHHHH
Q 002133 153 HFPSRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL---F-D-VVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---f-~-~~~wv~~~~~~~~~~~~~~ 223 (961)
.+.||++++++|...|. ....+.+.|+|++|+|||++|+.+++....... . + ..+++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 36799999999887775 466778999999999999999999998864321 1 1 3567777777888899999
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHH--HcCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecchhh-
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQAL--KKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV- 300 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v- 300 (961)
|++++.............+..+...+ ..+++++++||+++...+-+.+ ..+.. ......++. .||.++.....
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L-~~l~~--~~~~~~s~~-~vI~i~n~~d~~ 176 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKIL-QYFEK--WISSKNSKL-SIICVGGHNVTI 176 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHH-HHHHH--HHHCSSCCE-EEEEECCSSCCC
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHH-HHHHh--cccccCCcE-EEEEEecCcccc
Confidence 99998543222112233334444433 2346799999999765311111 11100 000002222 33333433211
Q ss_pred ---h----hhcCCCCceEEccCCCHHHHHHHHHHHhC
Q 002133 301 ---L----RINMSNPRIFSISTLADGEAKSLFEKIVG 330 (961)
Q Consensus 301 ---~----~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~ 330 (961)
. ...+. ...+.+.+++.++-.+++..++.
T Consensus 177 ~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 01111 24789999999999999988764
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.51 E-value=9.2e-07 Score=97.93 Aligned_cols=195 Identities=13% Similarity=0.170 Sum_probs=109.4
Q ss_pred CccccCCchHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL 228 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 228 (961)
....++||++.++.+...+.... .+.+.|+|+.|+||||+|+.+++.......+.. ..+... .....+....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~~~ 86 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQGR 86 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHTSC
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhccC
Confidence 35568999999999999887554 356889999999999999999987653221100 000000 0011111000
Q ss_pred CC-----CccCCCCHHHHHHHHHHHHH----cCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecc
Q 002133 229 GL-----EIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRD 297 (961)
Q Consensus 229 ~~-----~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~ 297 (961)
.. ..... ...+....+.+.+. .+++.+||+||++... .++.+...+.. ...+..+|++|..
T Consensus 87 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-------~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 87 FVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLATTD 158 (373)
T ss_dssp CSSCEEEETTCS-CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-------CCSSEEEEEEESC
T ss_pred CCceEEeccccc-CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-------CCCceEEEEEeCC
Confidence 00 00000 00011122222222 2457899999997642 22223221111 2345677777764
Q ss_pred hhh-hhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHH
Q 002133 298 QHV-LRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (961)
Q Consensus 298 ~~v-~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 360 (961)
..- ..........+++.+++.++..+++...+....... -.+....|++.++|.|..+..+.
T Consensus 159 ~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~-~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHCCCCHHHHHHHH
Confidence 432 111122346899999999999999987764221111 13456789999999998776554
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.43 E-value=5.6e-07 Score=89.10 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=43.8
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
....++||+++++++.+.+.....+.+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999998766677899999999999999999988753
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.43 E-value=3.7e-06 Score=91.02 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=107.0
Q ss_pred CccccCCchHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHH
Q 002133 150 GYVHFPSRNPVFQKMMESLR-----DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (961)
....++|++..+..+..++. ......+.|+|++|+|||++|+.+++.... ..++++.+......++..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~-- 82 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAA-- 82 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHH--
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHH--
Confidence 45679999999888877775 234467889999999999999999987641 234555443333222221
Q ss_pred HHHhCCCccCCCCHHHHHHHHHHHHHc--CCcEEEEEccccccc--ccccccCCCCCCCcc-----------cccCCCce
Q 002133 225 ADQLGLEIVRPDSLVEKANQLRQALKK--KKRVLVILDDIWTQI--NLDDIGIPFWDGEKQ-----------SVDNQGRW 289 (961)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~-----------~~~~~~gs 289 (961)
.+.. .+..+|+|||+.... ....+...+...... .....++.
T Consensus 83 -----------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 83 -----------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -----------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -----------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 1111 245677888876542 111110000000000 00011245
Q ss_pred EEEEEecchhhhh--hcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHHHHh
Q 002133 290 TLLLASRDQHVLR--INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIANAL 363 (961)
Q Consensus 290 ~IlvTtR~~~v~~--~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 363 (961)
++|.||....... ........+.+.+++.++..+++...+....... -.+....+++.++|.|..+..+...+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6777766543211 1111225799999999999999988775322211 23567889999999998887666554
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.32 E-value=2.1e-05 Score=82.46 Aligned_cols=201 Identities=12% Similarity=0.145 Sum_probs=108.4
Q ss_pred cccCCchHHHHHHHH-------Hhc---cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHH
Q 002133 152 VHFPSRNPVFQKMME-------SLR---DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEIC 221 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 221 (961)
..++|+.+.+++++. .+. ....+.+.|+|++|+|||++|+.+++... .. .+.++.+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~----~~-~~~i~~~~~~------ 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN----FP-FIKICSPDKM------ 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT----CS-EEEEECGGGC------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC----CC-EEEEeCHHHh------
Confidence 356787776666555 232 34456789999999999999999998753 22 1223322210
Q ss_pred HHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc------------ccccCCCCCCCcccccCCCce
Q 002133 222 GRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL------------DDIGIPFWDGEKQSVDNQGRW 289 (961)
Q Consensus 222 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~------------~~l~~~~~~~~~~~~~~~~gs 289 (961)
.+... . ........+.+.....+..+|+|||++..... +.+...+.. .-......
T Consensus 102 ------~g~~~--~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~----~~~~~~~~ 168 (272)
T 1d2n_A 102 ------IGFSE--T-AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK----APPQGRKL 168 (272)
T ss_dssp ------TTCCH--H-HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC----CCSTTCEE
T ss_pred ------cCCch--H-HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcC----ccCCCCCE
Confidence 01000 0 00112222333223346789999999764110 111000000 00023345
Q ss_pred EEEEEecchhhhhh-c-CCC-CceEEccCCCH-HHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCC------chHHHHHH
Q 002133 290 TLLLASRDQHVLRI-N-MSN-PRIFSISTLAD-GEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGG------LPIAVSTI 359 (961)
Q Consensus 290 ~IlvTtR~~~v~~~-~-~~~-~~~~~l~~L~~-~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g------lPLai~~~ 359 (961)
.||.||........ . ... ...+.+.+++. ++...++.... . . ..+....|++.+.| ++-++.++
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~--~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N--F---KDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C--S---CHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C--C---CHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 57777776644321 1 111 35789999988 66666655431 1 1 13456788888887 45555555
Q ss_pred HHHhccCChHHHHHHHHHHHhcC
Q 002133 360 ANALKGQSTHVWKDAINWLRKSN 382 (961)
Q Consensus 360 ~~~L~~~~~~~w~~~~~~l~~~~ 382 (961)
-.+-...+...+.+++..+....
T Consensus 243 ~~a~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 243 EMSLQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp HHHTTSCGGGHHHHHHHHHHHTS
T ss_pred HHHhhhchHHHHHHHHHHHHHcC
Confidence 54444446677888888776554
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.31 E-value=1.1e-05 Score=85.48 Aligned_cols=203 Identities=16% Similarity=0.163 Sum_probs=115.2
Q ss_pred CCccccCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (961)
....+++|.++.++++.+.+.. ...+.+.|+|++|+|||++|+.+++.... ..+.+..+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHH
Confidence 4467789999999988887742 34567899999999999999999987542 12333332211
Q ss_pred CHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc----------------cccccCCCCCCC
Q 002133 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----------------LDDIGIPFWDGE 279 (961)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~ 279 (961)
. ... .........+.......++.+|+|||++.... +..+...+.
T Consensus 89 ~--------------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~--- 149 (285)
T 3h4m_A 89 K--------------KFI--GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD--- 149 (285)
T ss_dssp C--------------CST--THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH---
T ss_pred H--------------hcc--chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh---
Confidence 0 000 01122333444444445678999999975410 000100000
Q ss_pred cccccCCCceEEEEEecchhhhhh--cC--CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCC-chH
Q 002133 280 KQSVDNQGRWTLLLASRDQHVLRI--NM--SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGG-LPI 354 (961)
Q Consensus 280 ~~~~~~~~gs~IlvTtR~~~v~~~--~~--~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPL 354 (961)
......+..||.||........ .. .-...+.+...+.++..+++...+.......+. ....+++...| .|-
T Consensus 150 --~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~--~~~~l~~~~~g~~~~ 225 (285)
T 3h4m_A 150 --GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV--NLEEIAKMTEGCVGA 225 (285)
T ss_dssp --TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHHCTTCCHH
T ss_pred --CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC--CHHHHHHHcCCCCHH
Confidence 0013456778888875533211 01 122478999999999999999887643222111 13567777777 454
Q ss_pred HHHHHHHH-----h-ccC---ChHHHHHHHHHHH
Q 002133 355 AVSTIANA-----L-KGQ---STHVWKDAINWLR 379 (961)
Q Consensus 355 ai~~~~~~-----L-~~~---~~~~w~~~~~~l~ 379 (961)
.+..+... + ++. +.+...+++....
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 44433322 1 122 5566666666543
No 172
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=4.2e-07 Score=86.61 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=32.2
Q ss_pred cCCCccEEEeecCCCCcccCChHHHhh----cccccEEeEeccccccccccccccCCccCCCcccccccccccceecccc
Q 002133 830 SFTNLRIINIEQCHRLKHLFPSFMAEK----LLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRL 905 (961)
Q Consensus 830 ~l~~L~~L~l~~c~~L~~l~~~~~~~~----l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c 905 (961)
.+++|++|++++|..+++-.-.. +.. +++|++|+|++|+++++-. -..+..+++|++|+|++|
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~G------------l~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKG------------IIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHH------------HHHGGGCTTCCEEEEESC
T ss_pred CCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHH------------HHHHhcCCCCCEEECCCC
Confidence 34555555555555554431111 121 2345566666655544431 112344555666666666
Q ss_pred ccccc
Q 002133 906 PQLTS 910 (961)
Q Consensus 906 ~~L~~ 910 (961)
|.++.
T Consensus 150 ~~Itd 154 (176)
T 3e4g_A 150 PGVKE 154 (176)
T ss_dssp TTCCC
T ss_pred CCCCc
Confidence 55554
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.27 E-value=1.1e-05 Score=90.44 Aligned_cols=178 Identities=15% Similarity=0.229 Sum_probs=105.3
Q ss_pred CCccccCCchHHH---HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-CCHHHHHHHH
Q 002133 149 RGYVHFPSRNPVF---QKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRI 224 (961)
Q Consensus 149 ~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 224 (961)
.....++|++..+ ..+...+.....+.+.|+|++|+||||+|+.+++.... . ++.++.. .....+ +.+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~--~-----f~~l~a~~~~~~~i-r~~ 94 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA--D-----VERISAVTSGVKEI-REA 94 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC--E-----EEEEETTTCCHHHH-HHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC--C-----eEEEEeccCCHHHH-HHH
Confidence 4467789999888 67777777777788999999999999999999987642 1 2222221 122221 111
Q ss_pred HHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEE-Eecchhh-
Q 002133 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLL-ASRDQHV- 300 (961)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~Ilv-TtR~~~v- 300 (961)
+ .........+++.+|+||++.... ..+.+...+ .. ....+|. ||.+...
T Consensus 95 ~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~l--------e~-~~v~lI~att~n~~~~ 148 (447)
T 3pvs_A 95 I-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHI--------ED-GTITFIGATTENPSFE 148 (447)
T ss_dssp H-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHH--------HT-TSCEEEEEESSCGGGS
T ss_pred H-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHH--------hc-CceEEEecCCCCcccc
Confidence 1 112222223567999999997652 222332111 12 2334444 4444321
Q ss_pred -hhhcCCCCceEEccCCCHHHHHHHHHHHhCCC------CCCCchhHHHHHHHHhhCCchHHHHHHH
Q 002133 301 -LRINMSNPRIFSISTLADGEAKSLFEKIVGDS------AKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (961)
Q Consensus 301 -~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~------~~~~~~~~~~~~i~~~c~glPLai~~~~ 360 (961)
.........++.+.+++.++...++.+.+... ....--.+..+.|++.++|.+-.+..+.
T Consensus 149 l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 149 LNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp SCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred cCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11112334588999999999999998877431 1111123566788888999886554333
No 174
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.26 E-value=2.5e-05 Score=86.89 Aligned_cols=297 Identities=9% Similarity=0.092 Sum_probs=151.4
Q ss_pred CCC-ceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCC---CCCCC-ccccCCcCCCEEEccCCCCCC--CccccCCC
Q 002133 532 QCT-RLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIH---FPSLP-LSLGSLINLRTLSFDCCHLED--VARVGDLA 604 (961)
Q Consensus 532 ~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~---~~~lp-~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~ 604 (961)
++. .|+++.+..+ +. .+....|.++.+|+.+.+..+. ++.++ ..|..+.+|+.+.+..+ ++. ...+..+.
T Consensus 61 ~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp TCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred CCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 453 4777877643 32 5667777888888888887763 45553 45777888887776544 333 35677888
Q ss_pred CCcEEEeccCcCCccch-hhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCC
Q 002133 605 KLEILSFRNSHIEQLPE-QIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSS 683 (961)
Q Consensus 605 ~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 683 (961)
+|+.+.+..+ +..++. .+..+.+|+.+.+.. .+..+....|.+ .+|+.+.+..+. ..+. ...+..+..
T Consensus 138 ~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~~~-~~i~------~~af~~c~~ 206 (394)
T 4gt6_A 138 ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPAKV-TRIG------TNAFSECFA 206 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECTTC-CEEC------TTTTTTCTT
T ss_pred ccccccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECCcc-cccc------cchhhhccc
Confidence 8888888653 445544 367788888888865 466666665543 578888876542 1111 134455666
Q ss_pred CCEEEccCcchhcccccccc--ccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCc
Q 002133 684 LTILDMHIPDAQLLLEDLIS--LDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGI 761 (961)
Q Consensus 684 L~~L~l~~~~~~~~~~~L~~--l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 761 (961)
|............ ...... .......+. ..+ .........+. .....+....+..+.+|+.+.+.+..
T Consensus 207 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~-- 276 (394)
T 4gt6_A 207 LSTITSDSESYPA-IDNVLYEKSANGDYALI--RYP----SQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV-- 276 (394)
T ss_dssp CCEEEECCSSSCB-SSSCEEEECTTSCEEEE--ECC----TTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC--
T ss_pred cceeccccccccc-ccceeeccccccccccc--ccc----cccccceEEcC-CcceEcccceeeecccccEEeccccc--
Confidence 6655443111000 000000 000000000 000 00000001100 00011111222233556666654321
Q ss_pred ccccccccCCCCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeec
Q 002133 762 QNIVQELDNGEGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQ 841 (961)
Q Consensus 762 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 841 (961)
..+... .+.++++|+.+.+.. .++.++.. .+..+.+|+.+.|.+ +++.+....| ..+.+|+++.|-.
T Consensus 277 ~~I~~~--aF~~c~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~aF------~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 277 VSIGTG--AFMNCPALQDIEFSS--RITELPES-VFAGCISLKSIDIPE--GITQILDDAF------AGCEQLERIAIPS 343 (394)
T ss_dssp CEECTT--TTTTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEECCT--TCCEECTTTT------TTCTTCCEEEECT
T ss_pred ceecCc--ccccccccccccCCC--cccccCce-eecCCCCcCEEEeCC--cccEehHhHh------hCCCCCCEEEECc
Confidence 112111 125566677666642 34455443 455566666666643 3444443333 4466677776643
Q ss_pred CCCCcccCChHHHhhcccccEEeEecc
Q 002133 842 CHRLKHLFPSFMAEKLLQLEELEVTDC 868 (961)
Q Consensus 842 c~~L~~l~~~~~~~~l~~L~~L~l~~c 868 (961)
.++.+.... +.+|++|+.+++.+.
T Consensus 344 --sv~~I~~~a-F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 344 --SVTKIPESA-FSNCTALNNIEYSGS 367 (394)
T ss_dssp --TCCBCCGGG-GTTCTTCCEEEESSC
T ss_pred --ccCEEhHhH-hhCCCCCCEEEECCc
Confidence 355554433 366667777666654
No 175
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=5.3e-06 Score=90.98 Aligned_cols=196 Identities=12% Similarity=0.127 Sum_probs=111.3
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhc--CCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKE--DLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
.....++|+++.++.+..++.....+.+.++|++|+||||+|+.+++..... ..+ ..+.++.+.......+ ++...
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 111 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIV-REKVK 111 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHH-TTHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHH-HHHHH
Confidence 3456789999999999999876655558999999999999999999875421 111 2334444443333322 22221
Q ss_pred HhC-CCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecchhhh-h
Q 002133 227 QLG-LEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL-R 302 (961)
Q Consensus 227 ~l~-~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~-~ 302 (961)
.+. ......... .......+++-+|++|++.... ..+.+...+.. .....++|++|....-. .
T Consensus 112 ~~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~-------~~~~~~~il~~~~~~~l~~ 178 (353)
T 1sxj_D 112 NFARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMET-------YSGVTRFCLICNYVTRIID 178 (353)
T ss_dssp HHHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGGGSCH
T ss_pred HHhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHh-------cCCCceEEEEeCchhhCcc
Confidence 111 000000000 0000011345799999987642 12222111111 23356777776543211 1
Q ss_pred hcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHH
Q 002133 303 INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (961)
Q Consensus 303 ~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 360 (961)
........+.+.+++.++....+...+......-+ .+..+.|++.++|.|..+..+.
T Consensus 179 ~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 179 PLASQCSKFRFKALDASNAIDRLRFISEQENVKCD-DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHTSSCHHHHHHHH
T ss_pred hhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 10111247899999999999999887743222111 3467889999999998654443
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=3.7e-07 Score=86.98 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=22.3
Q ss_pred CCccEEEeecCCCCcccCChHHHhhcccccEEeEeccccccc
Q 002133 832 TNLRIINIEQCHRLKHLFPSFMAEKLLQLEELEVTDCKILRM 873 (961)
Q Consensus 832 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~ 873 (961)
++|++|+|++|+++++--- ..+..+++|++|+|++|+.+++
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCCCCCc
Confidence 3566666666665555321 1234556666666666665554
No 177
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=1.4e-06 Score=94.98 Aligned_cols=154 Identities=17% Similarity=0.189 Sum_probs=87.9
Q ss_pred CCCceeEEEeccCCCC--------CCCChhhhhCCCceeEEEecCCCCCCCCccccCCcCCCEEEccCCCCCC--Ccccc
Q 002133 532 QCTRLKLFLLFTEDSS--------LQIPNQFFDGMTELLVLHLTGIHFPSLPLSLGSLINLRTLSFDCCHLED--VARVG 601 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~--------~~~~~~~~~~l~~L~~L~L~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--~~~~~ 601 (961)
.+++|+.|.+..+... ..-...++..+++|+.|+|++|.-..+|. + .+++|++|+|..|.+.. ...+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 5677888877544221 01123455778888888888874234444 3 37888888888887765 34443
Q ss_pred --CCCCCcEEEeccC--c------CCccchhh--hcCCCcCEEecCCCCCCcccChHHHh---cCccCCEEEccCCCCcc
Q 002133 602 --DLAKLEILSFRNS--H------IEQLPEQI--GNLTRLKLLDLSNCSKLKVIKPEVIS---RLSRLNELYMGNSFTRK 666 (961)
Q Consensus 602 --~l~~L~~L~l~~~--~------l~~lp~~~--~~l~~L~~L~l~~~~~l~~~~~~~l~---~l~~L~~L~l~~~~~~~ 666 (961)
.+++|++|+|+.+ . +..+...+ ..+++|++|++.+|......+.. +. .+++|++|+++.|.+..
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM-FLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH-HHHCSSGGGCSEEECCSSCCBH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH-HHhCccCCCCCEEECCCCCCCh
Confidence 6888888887531 1 22222222 34778888888875432222222 22 46788888888775543
Q ss_pred ccCCCccchHhhcCCCCCCEEEcc
Q 002133 667 VEGQSNASVVELKQLSSLTILDMH 690 (961)
Q Consensus 667 ~~~~~~~~~~~l~~l~~L~~L~l~ 690 (961)
... ......+.++++|+.|+++
T Consensus 294 ~G~--~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 294 EGA--RLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp HHH--HHHHTTHHHHTTCSEEECC
T ss_pred HHH--HHHHhhcccCCcceEEECC
Confidence 110 0111223445566666654
No 178
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.21 E-value=4.3e-05 Score=79.61 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=100.7
Q ss_pred CccccCCchHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCH
Q 002133 150 GYVHFPSRNPVFQKMMESLR---D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (961)
....++|.+..++.+.+.+. . ...+.+.|+|++|+|||++|+.+++.... . .+.++.+.-.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~--~---~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV--P---FLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC--C---EEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C---EEEechHHHHhh
Confidence 35668898887766655442 1 23356889999999999999999987642 2 234444432110
Q ss_pred HHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc-------------cc----cccCCCCCCCc
Q 002133 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------LD----DIGIPFWDGEK 280 (961)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~----~l~~~~~~~~~ 280 (961)
. .. ........+.+......+.+|+|||++.... .. .+...+.
T Consensus 79 ----------~-----~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~---- 138 (262)
T 2qz4_A 79 ----------I-----GG-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD---- 138 (262)
T ss_dssp ----------S-----TT-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH----
T ss_pred ----------c-----cC-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh----
Confidence 0 00 1112223333333334578999999976410 00 1100000
Q ss_pred ccccCCCceEEEEEecchhhhhhc-C---CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH-H
Q 002133 281 QSVDNQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-A 355 (961)
Q Consensus 281 ~~~~~~~gs~IlvTtR~~~v~~~~-~---~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-a 355 (961)
......+..||.||......... . .-...+.+...+.++-.+++..++...............+++.+.|.+- .
T Consensus 139 -~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 217 (262)
T 2qz4_A 139 -GMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGAD 217 (262)
T ss_dssp -TCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHH
T ss_pred -CcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHH
Confidence 00123456777777654422111 1 2235788999999999999988775322222222234678888888754 4
Q ss_pred HHHH
Q 002133 356 VSTI 359 (961)
Q Consensus 356 i~~~ 359 (961)
+..+
T Consensus 218 l~~l 221 (262)
T 2qz4_A 218 IANI 221 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 179
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=6.1e-06 Score=94.97 Aligned_cols=191 Identities=13% Similarity=0.117 Sum_probs=108.8
Q ss_pred CCccccCCchHHHHHHHHHhcc-----------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEe
Q 002133 149 RGYVHFPSRNPVFQKMMESLRD-----------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV 211 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 211 (961)
....+++|++..++++.+++.. ...+.+.|+|++|+||||+|+.+++... + .++.++.
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeC
Confidence 4567799999999999999863 1346899999999999999999998763 2 2345555
Q ss_pred cCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHH-HHcCCcEEEEEccccccccc-----ccccCCCCCCCcccccC
Q 002133 212 THTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQA-LKKKKRVLVILDDIWTQINL-----DDIGIPFWDGEKQSVDN 285 (961)
Q Consensus 212 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~kr~LlVlDdv~~~~~~-----~~l~~~~~~~~~~~~~~ 285 (961)
+...... +....+........ . ........+. ...+++.+|++|+++....- ..+...+ .
T Consensus 111 s~~~~~~-~~~~~i~~~~~~~~-~---~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l---------~ 176 (516)
T 1sxj_A 111 SDVRSKT-LLNAGVKNALDNMS-V---VGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC---------R 176 (516)
T ss_dssp TSCCCHH-HHHHTGGGGTTBCC-S---TTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH---------H
T ss_pred CCcchHH-HHHHHHHHHhcccc-H---HHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHH---------H
Confidence 5544433 22222222111000 0 0000000000 01246789999999765321 1111111 1
Q ss_pred CCceEEEEEecchhh--hhhcCCCCceEEccCCCHHHHHHHHHHHhCCC--CCCCchhHHHHHHHHhhCC-chHHHHHHH
Q 002133 286 QGRWTLLLASRDQHV--LRINMSNPRIFSISTLADGEAKSLFEKIVGDS--AKESDCRAIGVEIVGKCGG-LPIAVSTIA 360 (961)
Q Consensus 286 ~~gs~IlvTtR~~~v--~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~g-lPLai~~~~ 360 (961)
..+..||+++..... ..........+.+.+++.++..+.+...+... ..++ +....|++.++| ++-++..+.
T Consensus 177 ~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 177 KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred hcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 123345555544321 11112334578999999999999988876421 1222 246788999999 455565554
Q ss_pred H
Q 002133 361 N 361 (961)
Q Consensus 361 ~ 361 (961)
.
T Consensus 254 ~ 254 (516)
T 1sxj_A 254 T 254 (516)
T ss_dssp H
T ss_pred H
Confidence 3
No 180
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.16 E-value=6.5e-05 Score=81.97 Aligned_cols=188 Identities=11% Similarity=0.083 Sum_probs=106.6
Q ss_pred CCccccCCchHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
.....++|.+..++.+.+.+. ....+.+.|+|++|+|||++|+++++.... ..+.++.+.-..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc
Confidence 345678999999888887763 234567899999999999999999887531 234555443211
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc-------------cccccCCCCCCCcccc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------LDDIGIPFWDGEKQSV 283 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~ 283 (961)
. ... ........+.......++.+|+||+++.... ...+...+.. . ..
T Consensus 156 ~--------------~~g--~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~-~--~~ 216 (357)
T 3d8b_A 156 K--------------WVG--EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG-A--TT 216 (357)
T ss_dssp S--------------STT--HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC------
T ss_pred c--------------ccc--hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc-c--cc
Confidence 0 000 1122233333333334678999999964311 0111000000 0 00
Q ss_pred cCCCceEEEEEecchhhh--hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCC-chHHHHHHH
Q 002133 284 DNQGRWTLLLASRDQHVL--RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGG-LPIAVSTIA 360 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~--~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~ 360 (961)
....+..||.||...... .........+.+...+.++..+++...+......- .......|++.+.| .+-.+..+.
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL-SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc-cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 012355666677553222 11112335788999999999999988774322111 13456788888888 455566555
Q ss_pred H
Q 002133 361 N 361 (961)
Q Consensus 361 ~ 361 (961)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.15 E-value=3.4e-06 Score=86.86 Aligned_cols=177 Identities=12% Similarity=0.113 Sum_probs=102.4
Q ss_pred CccccCCc---hHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 150 GYVHFPSR---NPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 150 ~~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
....|+|+ +..++.+..+......+.+.|+|++|+||||+|+.+++..... ...+.|++++...+. +.+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~~ 97 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------STA 97 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HHH
Confidence 34556663 3556666666655566789999999999999999999987653 234567766442110 000
Q ss_pred HhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc----cccccCCCCCCCcccccCCCceEEEEEecchhh--
Q 002133 227 QLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----LDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV-- 300 (961)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v-- 300 (961)
..+.+ .++.+||+||++.... .+.+...+.. .......++|+||+...-
T Consensus 98 ------------------~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~-----~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 98 ------------------LLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNR-----VAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp ------------------GGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHH-----HHHHCSCEEEEEESSCTTTT
T ss_pred ------------------HHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHH-----HHHcCCCeEEEEcCCCHHHH
Confidence 00111 2457899999976522 1111111000 001122257777764321
Q ss_pred ----h--hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHH
Q 002133 301 ----L--RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (961)
Q Consensus 301 ----~--~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 360 (961)
. .........+.+.+++.++..+++...+...... --.+....|++.++|.+-.+..+.
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ-LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHccCCHHHHHHHH
Confidence 0 0001112679999999999999999877422111 123566788999999887665443
No 182
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.12 E-value=7e-05 Score=83.27 Aligned_cols=301 Identities=11% Similarity=0.143 Sum_probs=178.1
Q ss_pred CCChhhhhCCC-ceeEEEecCCCCCCC-CccccCCcCCCEEEccCCC---CCCC--ccccCCCCCcEEEeccCcCCccch
Q 002133 549 QIPNQFFDGMT-ELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCH---LEDV--ARVGDLAKLEILSFRNSHIEQLPE 621 (961)
Q Consensus 549 ~~~~~~~~~l~-~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~---l~~~--~~~~~l~~L~~L~l~~~~l~~lp~ 621 (961)
.+....|.+++ .|+.+.+..+ ++.+ ..+|.++.+|+.+.+..+. ++.+ ..|.++.+|+.+.+..+ ++.++.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 45566677775 5999999764 6767 4568999999999998764 5543 67888889988877654 666655
Q ss_pred h-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCCCccccCCCccchHhhcCCCCCCEEEccC------cch
Q 002133 622 Q-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSFTRKVEGQSNASVVELKQLSSLTILDMHI------PDA 694 (961)
Q Consensus 622 ~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~------~~~ 694 (961)
. +..+.+|+.+.+.. .+..++...+..+.+|+.+.+.++ +..+.. ..+. ...|+.+.+.- ...
T Consensus 131 ~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~------~aF~-~~~l~~i~ip~~~~~i~~~a 200 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEE------RAFT-GTALTQIHIPAKVTRIGTNA 200 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECT------TTTT-TCCCSEEEECTTCCEECTTT
T ss_pred hhhhhhcccccccccc--eeeeecccceecccccccccccce-eeEecc------cccc-ccceeEEEECCcccccccch
Confidence 4 78899999999975 567777777889999999998765 333332 1222 24577666541 112
Q ss_pred hccccccccccccceeEEEecccCCCCCCCccceEEecCCCcccchHHHHHhhccccEEEcccccCcccccccccCCCCc
Q 002133 695 QLLLEDLISLDLERYRIFIGDVWNWSGKYECSRTLKLKLDNSIYLGYGIKKLLKTTEDLYLDNLNGIQNIVQELDNGEGF 774 (961)
Q Consensus 695 ~~~~~~L~~l~L~~~~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l 774 (961)
+..+..+........... ..... ...-.......... ......+..+.+.+ .+..+... .+.++
T Consensus 201 f~~c~~l~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~ip~--~v~~i~~~--aF~~c 264 (394)
T 4gt6_A 201 FSECFALSTITSDSESYP---------AIDNV-LYEKSANGDYALIR--YPSQREDPAFKIPN--GVARIETH--AFDSC 264 (394)
T ss_dssp TTTCTTCCEEEECCSSSC---------BSSSC-EEEECTTSCEEEEE--CCTTCCCSEEECCT--TEEEECTT--TTTTC
T ss_pred hhhccccceecccccccc---------cccce-eecccccccccccc--cccccccceEEcCC--cceEcccc--eeeec
Confidence 223333322111111000 00000 00000000000000 00012233333322 12222211 23678
Q ss_pred cCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCChHHH
Q 002133 775 PRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPSFMA 854 (961)
Q Consensus 775 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~ 854 (961)
.+|+.+.+.+. +..+... .+..+++|+.+.+. ..++.+....+ ..+.+|+.+.|.. .++.+.... +
T Consensus 265 ~~L~~i~lp~~--~~~I~~~-aF~~c~~L~~i~l~--~~i~~I~~~aF------~~c~~L~~i~lp~--~v~~I~~~a-F 330 (394)
T 4gt6_A 265 AYLASVKMPDS--VVSIGTG-AFMNCPALQDIEFS--SRITELPESVF------AGCISLKSIDIPE--GITQILDDA-F 330 (394)
T ss_dssp SSCCEEECCTT--CCEECTT-TTTTCTTCCEEECC--TTCCEECTTTT------TTCTTCCEEECCT--TCCEECTTT-T
T ss_pred ccccEEecccc--cceecCc-ccccccccccccCC--CcccccCceee------cCCCCcCEEEeCC--cccEehHhH-h
Confidence 88999988654 3344433 56667888888885 35666655544 5678999999875 577776544 4
Q ss_pred hhcccccEEeEeccccccccccccccCCccCCCcccccccccccceecccc
Q 002133 855 EKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRL 905 (961)
Q Consensus 855 ~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c 905 (961)
.+|.+|+.+.|-+ +++.|. ...+.++++|+++++.+.
T Consensus 331 ~~C~~L~~i~ip~--sv~~I~------------~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 331 AGCEQLERIAIPS--SVTKIP------------ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCTTCCEEEECT--TCCBCC------------GGGGTTCTTCCEEEESSC
T ss_pred hCCCCCCEEEECc--ccCEEh------------HhHhhCCCCCCEEEECCc
Confidence 7899999999854 356662 346678889999888653
No 183
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=1.3e-05 Score=87.77 Aligned_cols=198 Identities=10% Similarity=0.107 Sum_probs=105.3
Q ss_pred CCccccCCchHHHHHHHHHh-ccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCE------------------
Q 002133 149 RGYVHFPSRNPVFQKMMESL-RDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDV------------------ 205 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~------------------ 205 (961)
.....++|++..++.+.+++ ...+.+.+.|+|+.|+||||+|+.++........ ++.
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 44667899999999999988 6555545999999999999999999985421110 000
Q ss_pred --EEEEEecCCC-CHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc--cccccCCCCCCCc
Q 002133 206 --VVDAEVTHTP-DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN--LDDIGIPFWDGEK 280 (961)
Q Consensus 206 --~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~ 280 (961)
.+.+..+... ......++++..+.....- .... .+.. +. +++-++|+|++..... .+.+...+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls~-l~-~~~~vlilDE~~~L~~~~~~~L~~~le~--- 160 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKDG-LA-HRYKCVIINEANSLTKDAQAALRRTMEK--- 160 (354)
T ss_dssp SSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH---
T ss_pred cceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cccc-cC-CCCeEEEEeCccccCHHHHHHHHHHHHh---
Confidence 1111111100 0000122222222110000 0000 0000 11 2567899999876421 1122111111
Q ss_pred ccccCCCceEEEEEecchh-hhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 281 QSVDNQGRWTLLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 281 ~~~~~~~gs~IlvTtR~~~-v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
...+..+|++|.... +..........+++.+++.++..+.+...+......-+-.+....|++.++|.+-.+..+
T Consensus 161 ----~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 161 ----YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp ----STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred ----hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 123567777776532 211112233689999999999999998876422111110245678999999998665444
Q ss_pred H
Q 002133 360 A 360 (961)
Q Consensus 360 ~ 360 (961)
.
T Consensus 237 l 237 (354)
T 1sxj_E 237 L 237 (354)
T ss_dssp H
T ss_pred H
Confidence 3
No 184
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.09 E-value=8.8e-05 Score=80.54 Aligned_cols=181 Identities=13% Similarity=0.141 Sum_probs=103.5
Q ss_pred CCccccCCchHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRD-----SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
....+++|++..++.+..++.. .....+.|+|++|+|||++|+.+++.... . .+.++.........+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~--~---~~~~~~~~~~~~~~~--- 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA--N---IKTTAAPMIEKSGDL--- 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC--C---EEEEEGGGCCSHHHH---
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC--C---eEEecchhccchhHH---
Confidence 3467899999999888888762 34457899999999999999999877532 2 233433322211111
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHHH-cCCcEEEEEccccccc--ccccccCCCCCCC-----------cccccCCCce
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQALK-KKKRVLVILDDIWTQI--NLDDIGIPFWDGE-----------KQSVDNQGRW 289 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~-----------~~~~~~~~gs 289 (961)
...+. ..+..+|+||++.... ....+...+.... .......++.
T Consensus 98 ----------------------~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 98 ----------------------AAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp ----------------------HHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred ----------------------HHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 11111 1345788888887541 0111100000000 0000011235
Q ss_pred EEEEEecchhhh--hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHHH
Q 002133 290 TLLLASRDQHVL--RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTIA 360 (961)
Q Consensus 290 ~IlvTtR~~~v~--~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 360 (961)
.+|.||...... .........+.+.+++.++...++...+...... --.+..+.|++.+.|.|-.+..+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT-CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE-ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 666666653322 1112223689999999999999998877432211 123556788999999996554443
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.08 E-value=0.0001 Score=79.26 Aligned_cols=187 Identities=15% Similarity=0.141 Sum_probs=109.1
Q ss_pred ccCCccccCCchHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC
Q 002133 147 SVRGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (961)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (961)
+.....+++|.++.++.|.+.+. ....+-+.++|++|+|||++|+++++.... . .+.++.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~--~---~~~v~~~-- 85 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--T---FFSVSSS-- 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC--E---EEEEEHH--
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC--C---EEEEchH--
Confidence 34557789999999998888772 112356899999999999999999987642 1 2333321
Q ss_pred CCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc-------------cccccCCCCCCCcc
Q 002133 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------LDDIGIPFWDGEKQ 281 (961)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~ 281 (961)
++.. .. .+ ........+.+.....++.+|+||+++.... ...+...+.
T Consensus 86 ----~l~~----~~----~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~----- 146 (322)
T 3eie_A 86 ----DLVS----KW----MG--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN----- 146 (322)
T ss_dssp ----HHHT----TT----GG--GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG-----
T ss_pred ----HHhh----cc----cc--hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc-----
Confidence 1111 00 00 2233344444444445678999999975421 011100000
Q ss_pred cc-cCCCceEEEEEecchhhhhh--cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCc-hHHHH
Q 002133 282 SV-DNQGRWTLLLASRDQHVLRI--NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL-PIAVS 357 (961)
Q Consensus 282 ~~-~~~~gs~IlvTtR~~~v~~~--~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~ 357 (961)
.. ....+..||.||........ ...-...+.+...+.++-.+++..++........ ......|++.+.|. +-.|.
T Consensus 147 ~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 147 GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp GGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHH
T ss_pred cccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHH
Confidence 00 13446667767765432210 0122356788899999999999988864332211 23457888888874 44454
Q ss_pred HHH
Q 002133 358 TIA 360 (961)
Q Consensus 358 ~~~ 360 (961)
.+.
T Consensus 226 ~l~ 228 (322)
T 3eie_A 226 VVV 228 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.08 E-value=0.00015 Score=77.65 Aligned_cols=191 Identities=18% Similarity=0.155 Sum_probs=107.4
Q ss_pred CCccccCCchHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
....++.|.++.++.|.+.+. ....+-+.++|++|+|||++|+++++.... . ..+.++.+.-.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~---~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S---TFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-C---EEEEEECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-C---cEEEEEhHHHHh
Confidence 456778899888887776652 122367899999999999999999987521 1 223344332210
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccc---------cccCCCCCCCcccc-cCC
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD---------DIGIPFWDGEKQSV-DNQ 286 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~~~-~~~ 286 (961)
...+ ........+.+.....++.+|+||+++....-. .+...+... ...+ ...
T Consensus 85 --------------~~~g--~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~-ld~~~~~~ 147 (322)
T 1xwi_A 85 --------------KWLG--ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQ-MQGVGVDN 147 (322)
T ss_dssp --------------SSCC--SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHH-HHCSSSCC
T ss_pred --------------hhhh--HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHH-HhcccccC
Confidence 0011 122334444444444577899999997651100 000000000 0000 023
Q ss_pred CceEEEEEecchhhhh--hcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCc-hHHHHHHHH
Q 002133 287 GRWTLLLASRDQHVLR--INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL-PIAVSTIAN 361 (961)
Q Consensus 287 ~gs~IlvTtR~~~v~~--~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~~ 361 (961)
.+..||.||....... ....-...+.+...+.++-.+++..++........ ......|++.+.|. +-.|..+..
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT-EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC-HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566666775442221 00133357889999999999999888754322111 23457889999887 444555543
No 187
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.07 E-value=0.00012 Score=81.17 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=104.9
Q ss_pred cCCccccCCchHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC
Q 002133 148 VRGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (961)
.....+++|++..++.+...+. ....+-+.|+|++|+|||++|+.+++.... ..+.++.+.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence 3456789999999999888773 123467899999999999999999877431 23344443321
Q ss_pred CHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc-------------ccccCCCCCCCccc
Q 002133 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL-------------DDIGIPFWDGEKQS 282 (961)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~-------------~~l~~~~~~~~~~~ 282 (961)
. .. .+ ........+.......+..+|+||+++....- ..+...+.. . .
T Consensus 186 ~--~~-------~g-------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~-~--~ 246 (389)
T 3vfd_A 186 S--KY-------VG-------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDG-V--Q 246 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHH-H--C
T ss_pred c--cc-------cc-------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhc-c--c
Confidence 1 00 00 11222333444444445689999999754100 000000000 0 0
Q ss_pred ccCCCceEEEEEecchhhh--hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH-HHHHH
Q 002133 283 VDNQGRWTLLLASRDQHVL--RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVSTI 359 (961)
Q Consensus 283 ~~~~~gs~IlvTtR~~~v~--~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 359 (961)
-.......||.||...... .........+.+...+.++..+++...+........ ......|++.+.|..- ++..+
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~-~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT-QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC-HHHHHHHHHHTTTCCHHHHHHH
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 0012345666677553322 111122346889999999999999888754322222 2356788888888654 55454
Q ss_pred H
Q 002133 360 A 360 (961)
Q Consensus 360 ~ 360 (961)
.
T Consensus 326 ~ 326 (389)
T 3vfd_A 326 A 326 (389)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=3.4e-05 Score=83.84 Aligned_cols=179 Identities=12% Similarity=0.141 Sum_probs=103.3
Q ss_pred cCCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC-EEEEEEecCCCCHHHHHHHHHH
Q 002133 148 VRGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD-VVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
+.....++|.+..++.+...+...+.+.+.++|+.|+||||+|+.+++..... .+. .+..++.+.......+. ++
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~ir-~~-- 96 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVR-NQ-- 96 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHHH-TH--
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHHH-HH--
Confidence 34456788999999998888877666558999999999999999999886421 111 12223333322222211 11
Q ss_pred HhCCCccCCCCHHHHHHHHHHHHH-----cCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecchh
Q 002133 227 QLGLEIVRPDSLVEKANQLRQALK-----KKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (961)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~ 299 (961)
+..... .+.+-++|+|+++... ..+.+...+.. .....++|++|....
T Consensus 97 ------------------i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-------~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 97 ------------------IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIER-------YTKNTRFCVLANYAH 151 (340)
T ss_dssp ------------------HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGG
T ss_pred ------------------HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc-------CCCCeEEEEEecCcc
Confidence 111111 1236788999986542 12222111111 123556666665432
Q ss_pred -hhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 300 -VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 300 -v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
+..........+.+.+++.++..+.+...+......-+ .+..+.|++.++|.+--+
T Consensus 152 ~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~-~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 152 KLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS-PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC-HHHHHHHHHHHTTCHHHH
T ss_pred ccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 11111122347899999999998888877632221111 345677888888887643
No 189
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.07 E-value=2.1e-06 Score=84.24 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=68.6
Q ss_pred hhCCCceeEEEecCC-CCC-----CCCccccCCcCCCEEEccCCCCCC--C----ccccCCCCCcEEEeccCcCCc----
Q 002133 555 FDGMTELLVLHLTGI-HFP-----SLPLSLGSLINLRTLSFDCCHLED--V----ARVGDLAKLEILSFRNSHIEQ---- 618 (961)
Q Consensus 555 ~~~l~~L~~L~L~~~-~~~-----~lp~~~~~l~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~l~~---- 618 (961)
+...+.|++|+|++| .+. .+...+...++|++|+|++|.+.+ . ..+...++|++|+|++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455666777777776 654 234445566777777777777665 1 334455677777777777763
Q ss_pred -cchhhhcCCCcCEEec--CCCCCCcccC----hHHHhcCccCCEEEccCCCCc
Q 002133 619 -LPEQIGNLTRLKLLDL--SNCSKLKVIK----PEVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 619 -lp~~~~~l~~L~~L~l--~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~ 665 (961)
+...+...++|++|++ ++ +.++.-. ...+...++|++|++++|.++
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4455666777888888 55 4454321 122455677888888777543
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.05 E-value=0.00023 Score=75.60 Aligned_cols=185 Identities=12% Similarity=0.135 Sum_probs=104.9
Q ss_pred CCccccCCchHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESLRD------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
.....++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh
Confidence 4467789999999888877631 23467899999999999999999987531 223444433211
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccccc-------------ccC---CCCCCCc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDD-------------IGI---PFWDGEK 280 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~-------------l~~---~~~~~~~ 280 (961)
.... ........+.......++.+|++|+++....-.. +.. ..+.
T Consensus 93 --------------~~~~--~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~--- 153 (297)
T 3b9p_A 93 --------------KYVG--DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG--- 153 (297)
T ss_dssp --------------SSCS--CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred --------------cccc--hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc---
Confidence 0000 2233333444444445678999999976421100 000 0000
Q ss_pred ccccCCCceEEEEEecchhhhhh--cCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH-HHH
Q 002133 281 QSVDNQGRWTLLLASRDQHVLRI--NMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI-AVS 357 (961)
Q Consensus 281 ~~~~~~~gs~IlvTtR~~~v~~~--~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~ 357 (961)
...+.+..||.||........ .......+.+...+.++...++...+.......+ ......|++.+.|.+- ++.
T Consensus 154 --~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 154 --NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD-TEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp -------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC-HHHHHHHHHHTTTCCHHHHH
T ss_pred --cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHH
Confidence 001234567777765432100 0122356788888888888888877643221111 2345788888988875 554
Q ss_pred HHH
Q 002133 358 TIA 360 (961)
Q Consensus 358 ~~~ 360 (961)
.+.
T Consensus 231 ~l~ 233 (297)
T 3b9p_A 231 ALA 233 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 191
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.05 E-value=1.7e-05 Score=85.67 Aligned_cols=174 Identities=9% Similarity=0.022 Sum_probs=100.2
Q ss_pred CCccccCCchHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
....+++|+++.+..+.+++..... .++.+.|++|+|||++|+.+++.... ..+.++.+.. ... .+++.+.
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~-~i~~~~~- 94 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KID-FVRGPLT- 94 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHH-HHHTHHH-
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHH-HHHHHHH-
Confidence 4467889999999999999875554 56778888999999999999887631 2345554432 222 2222111
Q ss_pred hCCCccCCCCHHHHHHHHHHHHH----cCCcEEEEEccccccc---ccccccCCCCCCCcccccCCCceEEEEEecchhh
Q 002133 228 LGLEIVRPDSLVEKANQLRQALK----KKKRVLVILDDIWTQI---NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV 300 (961)
Q Consensus 228 l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v 300 (961)
+... .+++.+|++||++... ..+.+...+.. ...+.++|+||....-
T Consensus 95 -------------------~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~-------~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 95 -------------------NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA-------YSSNCSIIITANNIDG 148 (324)
T ss_dssp -------------------HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH-------HGGGCEEEEEESSGGG
T ss_pred -------------------HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh-------CCCCcEEEEEeCCccc
Confidence 1111 1367899999997653 22222111111 1235678888766432
Q ss_pred h-hhcCCCCceEEccCCCHHHHHHHHHH-------HhCCCCCCCchhHHHHHHHHhhCCchHHH
Q 002133 301 L-RINMSNPRIFSISTLADGEAKSLFEK-------IVGDSAKESDCRAIGVEIVGKCGGLPIAV 356 (961)
Q Consensus 301 ~-~~~~~~~~~~~l~~L~~~~s~~Lf~~-------~~~~~~~~~~~~~~~~~i~~~c~glPLai 356 (961)
. .........+++.+++.++-.+++.. .+......-+..+....|++.++|.+-.+
T Consensus 149 l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 149 IIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp SCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHH
T ss_pred cCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHH
Confidence 1 00011124799999998885443322 22211111111256678888898877544
No 192
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.01 E-value=4.9e-06 Score=90.61 Aligned_cols=129 Identities=15% Similarity=0.182 Sum_probs=69.2
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCC-CCccc--cCCcCCCEEEccCC--C------CCCC-cc
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPS-LPLSL--GSLINLRTLSFDCC--H------LEDV-AR 599 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-lp~~~--~~l~~L~~L~L~~~--~------l~~~-~~ 599 (961)
.+|+|+.|.+.+|... .++. + .+++|+.|+|..|.+.. ....+ ..+++|++|+|+.+ . +..+ ..
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 5667777777665311 2332 2 26677777777666541 11122 25677777776431 1 1111 11
Q ss_pred c--cCCCCCcEEEeccCcCCc-cchhh---hcCCCcCEEecCCCCCCcccCh----HHHhcCccCCEEEccCCCCc
Q 002133 600 V--GDLAKLEILSFRNSHIEQ-LPEQI---GNLTRLKLLDLSNCSKLKVIKP----EVISRLSRLNELYMGNSFTR 665 (961)
Q Consensus 600 ~--~~l~~L~~L~l~~~~l~~-lp~~~---~~l~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~ 665 (961)
+ ..+++|++|++.+|.+.. .+..+ ..+++|++|+|+. +.++.... ..+..+++|+.|++++|.+.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 1 246777777777776652 22222 2466777777766 44544211 11345677777777777543
No 193
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.99 E-value=1.4e-05 Score=85.59 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=85.2
Q ss_pred ccCCchHHHHHHHHHhc---------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC--EEEEEEecCCC
Q 002133 153 HFPSRNPVFQKMMESLR---------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD--VVVDAEVTHTP 215 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~ 215 (961)
.++|.++.++.+.+.+. ......+.|+|++|+|||++|+.+++......... ..+.++.+.-
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l- 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL- 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh-
Confidence 47888888777766543 23344689999999999999999998876533222 2233332111
Q ss_pred CHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc-----------ccccccCCCCCCCccccc
Q 002133 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI-----------NLDDIGIPFWDGEKQSVD 284 (961)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-----------~~~~l~~~~~~~~~~~~~ 284 (961)
.....+ ..... +...+...+..+|+||+++... ....+...+..
T Consensus 111 -------------~~~~~g--~~~~~---~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~------- 165 (309)
T 3syl_A 111 -------------VGQYIG--HTAPK---TKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN------- 165 (309)
T ss_dssp -------------CCSSTT--CHHHH---HHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH-------
T ss_pred -------------hhhccc--ccHHH---HHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc-------
Confidence 000011 11111 2222222234689999998441 11122111111
Q ss_pred CCCceEEEEEecchhhh-------hhcCCCCceEEccCCCHHHHHHHHHHHhC
Q 002133 285 NQGRWTLLLASRDQHVL-------RINMSNPRIFSISTLADGEAKSLFEKIVG 330 (961)
Q Consensus 285 ~~~gs~IlvTtR~~~v~-------~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~ 330 (961)
...+..||.||...... .........+.+.+++.++-.+++..++.
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 166 NRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 33456788887643211 00001125789999999999999988764
No 194
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.99 E-value=1.5e-05 Score=78.14 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=43.5
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
....++||+++++.+.+.+.....+.+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999998766777899999999999999999988643
No 195
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.95 E-value=0.00012 Score=78.96 Aligned_cols=170 Identities=14% Similarity=0.146 Sum_probs=99.6
Q ss_pred chHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcC--------------------CCCEEEEEEec---
Q 002133 157 RNPVFQKMMESLRDSNV-NMIGLYGMGGVGKTTLVKVVARQVVKED--------------------LFDVVVDAEVT--- 212 (961)
Q Consensus 157 r~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~--- 212 (961)
.++..+.+.+.+...+. +.+.++|+.|+|||++|+.+++...... |+|. .++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccC
Confidence 34556777777765554 5689999999999999999998764321 2332 233221
Q ss_pred CCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceE
Q 002133 213 HTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWT 290 (961)
Q Consensus 213 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~ 290 (961)
......+ .+++.+.+..... .+++-++|+|+++... ..+.+...+-. ...++.
T Consensus 86 ~~~~i~~-ir~l~~~~~~~~~-----------------~~~~kvviIdead~l~~~a~naLLk~lEe-------p~~~~~ 140 (334)
T 1a5t_A 86 NTLGVDA-VREVTEKLNEHAR-----------------LGGAKVVWVTDAALLTDAAANALLKTLEE-------PPAETW 140 (334)
T ss_dssp SSBCHHH-HHHHHHHTTSCCT-----------------TSSCEEEEESCGGGBCHHHHHHHHHHHTS-------CCTTEE
T ss_pred CCCCHHH-HHHHHHHHhhccc-----------------cCCcEEEEECchhhcCHHHHHHHHHHhcC-------CCCCeE
Confidence 1112222 1223322221110 1357889999998652 22223222211 234566
Q ss_pred EEEEecchh-hhhhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHH
Q 002133 291 LLLASRDQH-VLRINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (961)
Q Consensus 291 IlvTtR~~~-v~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 358 (961)
+|++|.+.. +...-......+.+.++++++..+.+.... .. ..+.+..+++.++|.|..+..
T Consensus 141 ~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~---~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 141 FFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TM---SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CC---CHHHHHHHHHHTTTCHHHHHH
T ss_pred EEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 666665543 222212334589999999999999988775 11 123457899999999976644
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.94 E-value=0.00017 Score=78.46 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=105.3
Q ss_pred CCccccCCchHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
....+++|.+..++.|.+.+. ....+-|.|+|++|+|||++|+++++.... ..+.++.+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-----EEEEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEeeHH----
Confidence 446778999998888887763 112345889999999999999999998742 12333322
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc-------------cccccCCCCCCCcccc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------LDDIGIPFWDGEKQSV 283 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~ 283 (961)
++.. .. .+ ........+.......++.+|+||+++.... ...+...+.. ..
T Consensus 119 --~l~~----~~----~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~----~~ 182 (355)
T 2qp9_X 119 --DLVS----KW----MG--ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG----VG 182 (355)
T ss_dssp --HHHS----CC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHH----CC
T ss_pred --HHhh----hh----cc--hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhc----cc
Confidence 1111 00 01 1123334444444445679999999976421 0111000000 00
Q ss_pred cCCCceEEEEEecchhhhh--hcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCc-hHHHHHHH
Q 002133 284 DNQGRWTLLLASRDQHVLR--INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL-PIAVSTIA 360 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~~--~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 360 (961)
....+..||.||....... ....-...+.+...+.++-.+++..++........ ......|++.+.|. +-.|..+.
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 0234566776776542210 11133457889999999999999988764322111 23457788888884 44454444
No 197
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.92 E-value=0.00015 Score=81.32 Aligned_cols=183 Identities=15% Similarity=0.203 Sum_probs=102.8
Q ss_pred ccccC-CchH--HHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 151 YVHFP-SRNP--VFQKMMESLRDSN-VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 151 ~~~~~-gr~~--~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
++.|+ |... ....+........ ...+.|+|++|+||||||+.+++.......-..+++++... +..++..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHH
Confidence 45565 6433 3333444333333 56799999999999999999999875431112345555432 3344443
Q ss_pred HhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc---c-ccccCCCCCCCcccccCCCceEEEEEecchhh--
Q 002133 227 QLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN---L-DDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV-- 300 (961)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v-- 300 (961)
.+... . ...+.+.+. .+.-+|+|||++.... . +.+...+.. + ...|..||+||....-
T Consensus 178 ~~~~~-----~----~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~-----l-~~~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 178 SMKEG-----K----LNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNE-----L-HDSGKQIVICSDREPQKL 241 (440)
T ss_dssp HHHTT-----C----HHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHH-----H-HTTTCEEEEEESSCGGGC
T ss_pred HHHcc-----c----HHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHH-----H-HHCCCeEEEEECCCHHHH
Confidence 33211 1 122333332 1457899999976532 1 112111100 0 1346678888876321
Q ss_pred ------hhhcCCCCceEEccCCCHHHHHHHHHHHhCC--CCCCCchhHHHHHHHHhhCCchHHHHH
Q 002133 301 ------LRINMSNPRIFSISTLADGEAKSLFEKIVGD--SAKESDCRAIGVEIVGKCGGLPIAVST 358 (961)
Q Consensus 301 ------~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~--~~~~~~~~~~~~~i~~~c~glPLai~~ 358 (961)
....+.....+.+++++.++..+++.+.+.. ...++ ++...|++.++|.+-.+.-
T Consensus 242 ~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 242 SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 0111223357899999999999999887742 11222 3466788899998865533
No 198
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.92 E-value=8.3e-05 Score=81.86 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=38.0
Q ss_pred ccccCCchHHHHH---HHHHhccCCc--cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 151 YVHFPSRNPVFQK---MMESLRDSNV--NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 151 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...++|++..++. +.+.+..... +.+.|+|++|+|||++|+.+++...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6679999988665 4444444433 5899999999999999999999875
No 199
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=5.3e-06 Score=81.28 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=78.0
Q ss_pred CCCceeEEEeccC-CCCCCC---ChhhhhCCCceeEEEecCCCCCC-----CCccccCCcCCCEEEccCCCCCC------
Q 002133 532 QCTRLKLFLLFTE-DSSLQI---PNQFFDGMTELLVLHLTGIHFPS-----LPLSLGSLINLRTLSFDCCHLED------ 596 (961)
Q Consensus 532 ~~~~L~~L~l~~n-~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~-----lp~~~~~l~~L~~L~L~~~~l~~------ 596 (961)
..+.|++|+|++| .+...- ....+...++|++|+|++|.+.. +...+...++|++|+|++|.+.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4677777888777 654321 11223567788889999888762 44556666789999999998876
Q ss_pred CccccCCCCCcEEEe--ccCcCCc-----cchhhhcCCCcCEEecCCCCCCc
Q 002133 597 VARVGDLAKLEILSF--RNSHIEQ-----LPEQIGNLTRLKLLDLSNCSKLK 641 (961)
Q Consensus 597 ~~~~~~l~~L~~L~l--~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~l~ 641 (961)
...+...++|++|+| ++|.++. +...+...++|++|++++| .++
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCC
Confidence 156777788999999 7788873 4556677789999999884 443
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.91 E-value=0.00049 Score=77.30 Aligned_cols=187 Identities=17% Similarity=0.162 Sum_probs=103.8
Q ss_pred CCccccCCchHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESLR------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
....+++|.+..++.+.+.+. ....+.+.++|++|+|||++|+++++.... . ..+.++.+.-
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-~---~~~~v~~~~l-- 204 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S---TFFSISSSDL-- 204 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-S---EEEEECCC----
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-C---CEEEEeHHHH--
Confidence 446778999998888887662 123467899999999999999999987521 1 1223332221
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc-------------cccccCCCCCCCcccc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN-------------LDDIGIPFWDGEKQSV 283 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~ 283 (961)
.... .+. .. .....+.+.....++.+|+||+++.... ...+...+.. ..
T Consensus 205 ----~~~~---~g~---~~----~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~----~~ 266 (444)
T 2zan_A 205 ----VSKW---LGE---SE----KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG----VG 266 (444)
T ss_dssp -----------------CC----CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC----SS
T ss_pred ----Hhhh---cch---HH----HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC----cc
Confidence 1111 110 01 1122333333345678999999975411 0011011000 00
Q ss_pred cCCCceEEEEEecchhhhh--hcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCc-hHHHHHHH
Q 002133 284 DNQGRWTLLLASRDQHVLR--INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL-PIAVSTIA 360 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~~--~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~~ 360 (961)
....+..||.||....... ........+.+...+.++-..+|..++........ ......|++.+.|. +-.|..+.
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT-EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC-HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 0234566777776543221 11133357888888999999999888754322111 23456788888885 44554444
No 201
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.91 E-value=0.00027 Score=75.12 Aligned_cols=180 Identities=12% Similarity=0.147 Sum_probs=102.2
Q ss_pred cCCccccCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC
Q 002133 148 VRGYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (961)
.....+++|.++.++++.+.+.. ...+.+.|+|++|+|||++|+.+++.... ..+.++
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~---- 81 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIK---- 81 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEEC----
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEE----
Confidence 34466788999888777766531 34567899999999999999999987541 122332
Q ss_pred CCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc---c-------------ccccCCCCCC
Q 002133 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN---L-------------DDIGIPFWDG 278 (961)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---~-------------~~l~~~~~~~ 278 (961)
..++.... .+.. ......+.+......+.+|++|+++.... . ..+...+ +
T Consensus 82 --~~~l~~~~---~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l-~- 147 (301)
T 3cf0_A 82 --GPELLTMW---FGES-------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM-D- 147 (301)
T ss_dssp --HHHHHHHH---HTTC-------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHH-H-
T ss_pred --hHHHHhhh---cCch-------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHh-h-
Confidence 22333222 1211 11123333333334679999999975310 0 0110000 0
Q ss_pred CcccccCCCceEEEEEecchhhhhhc-C---CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH
Q 002133 279 EKQSVDNQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (961)
Q Consensus 279 ~~~~~~~~~gs~IlvTtR~~~v~~~~-~---~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 354 (961)
.+....+..||.||......... . .-...+.+...+.++-.+++..++.......+.. ...+++.+.|.|-
T Consensus 148 ---~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~--~~~la~~~~g~sg 222 (301)
T 3cf0_A 148 ---GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNGFSG 222 (301)
T ss_dssp ---SSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHTCSSCCH
T ss_pred ---cccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch--HHHHHHHcCCCCH
Confidence 01123467788888665332111 1 2235789999999999999988775332211111 2456677777765
Q ss_pred H
Q 002133 355 A 355 (961)
Q Consensus 355 a 355 (961)
+
T Consensus 223 ~ 223 (301)
T 3cf0_A 223 A 223 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.89 E-value=1.1e-05 Score=83.08 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=41.9
Q ss_pred hCCCceeEEEecCCCCCCCC---ccccCCcCCCEEEccCCCCCCCccccCCC--CCcEEEeccCcCC
Q 002133 556 DGMTELLVLHLTGIHFPSLP---LSLGSLINLRTLSFDCCHLEDVARVGDLA--KLEILSFRNSHIE 617 (961)
Q Consensus 556 ~~l~~L~~L~L~~~~~~~lp---~~~~~l~~L~~L~L~~~~l~~~~~~~~l~--~L~~L~l~~~~l~ 617 (961)
.++++|+.|+|++|.+..++ ..+..+++|++|+|++|.+++...+..+. +|++|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 45777778888887777543 44567777777777777777654444444 6777777777665
No 203
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.0005 Score=74.40 Aligned_cols=183 Identities=11% Similarity=0.109 Sum_probs=105.2
Q ss_pred ccCCccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC
Q 002133 147 SVRGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (961)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (961)
|.....++.|-++.+++|.+.+. -...+-|.++|++|+|||.+|+++++..... .+.++.+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHH
Confidence 34456778888888777766553 1234568899999999999999999987632 24444433
Q ss_pred CCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccc------------cccCCCCCCCcc
Q 002133 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD------------DIGIPFWDGEKQ 281 (961)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~------------~l~~~~~~~~~~ 281 (961)
-.+ ...+ .....+..+...-+...++.|++|+++....-. .....+.. ...
T Consensus 218 l~s--------------k~vG--ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~-~lD 280 (405)
T 4b4t_J 218 LVQ--------------KYIG--EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN-QLD 280 (405)
T ss_dssp GSC--------------SSTT--HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHH-HHH
T ss_pred hhc--------------cccc--hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHH-hhh
Confidence 211 0000 122333444444444578999999987541100 00000000 000
Q ss_pred cccCCCceEEEEEecchhhhhhc----CCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 282 SVDNQGRWTLLLASRDQHVLRIN----MSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 282 ~~~~~~gs~IlvTtR~~~v~~~~----~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
.+....+..||.||......... -.-...+.+..-+.++-.++|+.+........+.. ...|++.+.|.-
T Consensus 281 g~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~S 354 (405)
T 4b4t_J 281 GFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCS 354 (405)
T ss_dssp TTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCC
T ss_pred ccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCC
Confidence 11244566677777665443111 13346889998999999999988876433222211 356778887764
No 204
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.81 E-value=7.3e-05 Score=84.65 Aligned_cols=151 Identities=14% Similarity=0.191 Sum_probs=84.7
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCC----C-EEEEEEecCCCCHHHHHHHH
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLF----D-VVVDAEVTHTPDWKEICGRI 224 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~-~~~wv~~~~~~~~~~~~~~i 224 (961)
..++++||+++++.+++.+......-+.++|++|+|||++|+.+++........ + ..+.++.+.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----------- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT----------- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-----------
Confidence 356799999999999999976656667899999999999999999986432100 1 122233220
Q ss_pred HHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecchhh----
Q 002133 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV---- 300 (961)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v---- 300 (961)
...| ........+...+...++.+|++| ...+..+.+...+ ..+..++|.+|.....
T Consensus 247 -~~~g-------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L---------~~g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 247 -KYRG-------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL---------ARGELQCIGATTLDEYRKYI 307 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT---------TSSSCEEEEECCTTTTHHHH
T ss_pred -cccc-------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhh---------cCCCEEEEecCCHHHHHHHh
Confidence 0000 001122334444444467888999 2222222232222 1234556666554431
Q ss_pred --hhhcCCCCceEEccCCCHHHHHHHHHHHhC
Q 002133 301 --LRINMSNPRIFSISTLADGEAKSLFEKIVG 330 (961)
Q Consensus 301 --~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~ 330 (961)
..........+.+++.+.++..+++...+.
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 000011223689999999999999987653
No 205
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=4.4e-06 Score=86.04 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=47.4
Q ss_pred cCCcCCCEEEccCCCCCCCc----cccCCCCCcEEEeccCcCCccchhhhcCC--CcCEEecCCCCCCcccC------hH
Q 002133 579 GSLINLRTLSFDCCHLEDVA----RVGDLAKLEILSFRNSHIEQLPEQIGNLT--RLKLLDLSNCSKLKVIK------PE 646 (961)
Q Consensus 579 ~~l~~L~~L~L~~~~l~~~~----~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~~l~~~~------~~ 646 (961)
.++++|++|+|++|+++++. .+..+++|+.|+|++|.++.+. .+..+. +|++|+|++|.....+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45677777777777777633 3346777777777777776652 234343 67777777744323233 12
Q ss_pred HHhcCccCCEEE
Q 002133 647 VISRLSRLNELY 658 (961)
Q Consensus 647 ~l~~l~~L~~L~ 658 (961)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 355666666665
No 206
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.001 Score=72.19 Aligned_cols=185 Identities=16% Similarity=0.119 Sum_probs=103.1
Q ss_pred cccCCccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEec
Q 002133 146 FSVRGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (961)
Q Consensus 146 ~~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (961)
.|.....++.|-++.+++|.+.+. -...+=|.++|++|+|||.+|+++++..... | +.++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s 250 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGS 250 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESG
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHH
Confidence 344556778888888777766543 1234678999999999999999999987632 2 334433
Q ss_pred CCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccccccCCCCCC--------C---cc
Q 002133 213 HTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDG--------E---KQ 281 (961)
Q Consensus 213 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~--------~---~~ 281 (961)
.-.+ ...+ .....+..+....+...+++|++|+++....-..-...-.+. . ..
T Consensus 251 ~l~s--------------k~vG--esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 251 ELIQ--------------KYLG--DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp GGCC--------------SSSS--HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred Hhhh--------------ccCc--hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 2110 0000 122333444444444578999999987541100000000000 0 00
Q ss_pred cccCCCceEEEEEecchhhhhhcCC----CCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 282 SVDNQGRWTLLLASRDQHVLRINMS----NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 282 ~~~~~~gs~IlvTtR~~~v~~~~~~----~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
.+....+..||.||..........- -...+.+..-+.++-.++|..++.......+.. ...|++.+.|.-
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd--l~~LA~~T~GfS 388 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN--LETLVTTKDDLS 388 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC--HHHHHHHCCSCC
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 1123456667777766554422221 123577888888888889988875433222211 245677777764
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.0011 Score=73.10 Aligned_cols=184 Identities=15% Similarity=0.129 Sum_probs=103.2
Q ss_pred ccCCccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC
Q 002133 147 SVRGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (961)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (961)
|.....++.|-++.+++|.+.+. -...+-|.++|++|+|||++|+++++..... .+.++.+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~ 250 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASG 250 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhh
Confidence 34456778898888777766553 1234678999999999999999999987632 23444443
Q ss_pred CCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccccccCCCCCC--------C---ccc
Q 002133 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDG--------E---KQS 282 (961)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~--------~---~~~ 282 (961)
-.+ ...+ .....+..+...-+...+++|++|+++....-..-...-.+. . ...
T Consensus 251 l~s--------------k~~G--ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 251 IVD--------------KYIG--ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp TCC--------------SSSS--HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred hcc--------------ccch--HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 211 0000 112233344444444578999999997541100000000000 0 001
Q ss_pred ccCCCceEEEEEecchhhhhhcC-C---CCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 283 VDNQGRWTLLLASRDQHVLRINM-S---NPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 283 ~~~~~gs~IlvTtR~~~v~~~~~-~---~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
+....+..||.||.......... . -...+.+..-+.++-.++|+.++.......+.. ...|++.+.|.-
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 12345567888886655432222 1 134678888888888888887775332222211 246777887764
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.68 E-value=0.00021 Score=87.49 Aligned_cols=161 Identities=18% Similarity=0.204 Sum_probs=88.6
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC-----CCEEEEEEecCCCCHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL-----FDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~ 223 (961)
...+.++||++++.++++.+.......+.++|++|+||||+|+.+++....... -..+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 345778999999999999987666666889999999999999999998743210 11334454322110
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHHHc-CCcEEEEEcccccccc-------cccccCCCCCCCcccccCCCceEEEEEe
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQALKK-KKRVLVILDDIWTQIN-------LDDIGIPFWDGEKQSVDNQGRWTLLLAS 295 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~~~~~gs~IlvTt 295 (961)
+....+ ........+.+.+.. +++.+|++|++..... ++.. ..+ ...+ ...+..+|.||
T Consensus 240 -----g~~~~g--~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~-~~L----~~~l-~~~~i~~I~at 306 (854)
T 1qvr_A 240 -----GAKYRG--EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAG-NML----KPAL-ARGELRLIGAT 306 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHH-HTTCCCEEEEE
T ss_pred -----cCccch--HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHH-HHH----HHHH-hCCCeEEEEec
Confidence 000000 223334444444443 3678999999976421 1110 000 0001 12334455555
Q ss_pred cchhh-----hhhcCCCCceEEccCCCHHHHHHHHHHHh
Q 002133 296 RDQHV-----LRINMSNPRIFSISTLADGEAKSLFEKIV 329 (961)
Q Consensus 296 R~~~v-----~~~~~~~~~~~~l~~L~~~~s~~Lf~~~~ 329 (961)
..... ..........+.+++++.++..+++....
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 43321 11111222358999999999999987543
No 209
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.66 E-value=0.00045 Score=74.32 Aligned_cols=176 Identities=16% Similarity=0.161 Sum_probs=95.3
Q ss_pred ccccC-Cc--hHHHHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 151 YVHFP-SR--NPVFQKMMESLRDS--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 151 ~~~~~-gr--~~~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
++.|+ |. ......+....... ....+.|+|++|+||||+|+.+++..... .+ .+++++.. .+...+.
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~~------~~~~~~~ 81 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSAD------DFAQAMV 81 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEHH------HHHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEHH------HHHHHHH
Confidence 34454 43 23344444444433 34678999999999999999999987543 12 23555433 2333333
Q ss_pred HHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc---c-ccccCCCCCCCcccccCCCceEEEEEecchhhh
Q 002133 226 DQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN---L-DDIGIPFWDGEKQSVDNQGRWTLLLASRDQHVL 301 (961)
Q Consensus 226 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v~ 301 (961)
..+... . ...+.+.+. +..+|++||+..... + +.+...+.. . ...+..||+||......
T Consensus 82 ~~~~~~-----~----~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~-----~-~~~~~~iii~~~~~~~~ 144 (324)
T 1l8q_A 82 EHLKKG-----T----INEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNT-----L-YLLEKQIILASDRHPQK 144 (324)
T ss_dssp HHHHHT-----C----HHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHH-----H-HHTTCEEEEEESSCGGG
T ss_pred HHHHcC-----c----HHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHH-----H-HHCCCeEEEEecCChHH
Confidence 322100 1 122233333 357899999976532 1 111111100 0 12355788887643210
Q ss_pred --------hhcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH
Q 002133 302 --------RINMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (961)
Q Consensus 302 --------~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 354 (961)
.........+.+.+ +.++..+++...+......-+ .+....|++.+ |..-
T Consensus 145 l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~-~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 145 LDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR-KEVIDYLLENT-KNVR 202 (324)
T ss_dssp CTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHC-SSHH
T ss_pred HHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHhC-CCHH
Confidence 11122335789999 999999999887742211111 34567788888 6654
No 210
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.0007 Score=74.28 Aligned_cols=181 Identities=17% Similarity=0.131 Sum_probs=102.3
Q ss_pred CCccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP 215 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 215 (961)
....++.|-++.+++|.+.+. -...+-|.++|++|+|||++|+++++..... .+.+..+.-.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~ 280 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELV 280 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhh
Confidence 345677888888877766542 1345678999999999999999999987632 2344433211
Q ss_pred CHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccccc------------ccCCCCCCCcccc
Q 002133 216 DWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDD------------IGIPFWDGEKQSV 283 (961)
Q Consensus 216 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~------------l~~~~~~~~~~~~ 283 (961)
+ ...+ .....+..+...-+...+++|++|+++....-.. ....+.. ....+
T Consensus 281 s--------------k~vG--esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~-~lDg~ 343 (467)
T 4b4t_H 281 Q--------------KYVG--EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELIT-QLDGF 343 (467)
T ss_dssp C--------------CSSS--HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHH-HHHSS
T ss_pred c--------------ccCC--HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHH-Hhhcc
Confidence 1 0000 1122333444444445789999999875411000 0000000 00001
Q ss_pred cCCCceEEEEEecchhhhhhc----CCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 284 DNQGRWTLLLASRDQHVLRIN----MSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~~~~----~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
....+..||.||......... -.-...+.+..-+.++-.++|+.++.......+.. ...|++.+.|.-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 134455667777554433111 12346788888899999999988876433222211 246778887764
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.62 E-value=0.0043 Score=64.02 Aligned_cols=186 Identities=13% Similarity=0.116 Sum_probs=96.5
Q ss_pred CCccccCCchHHHHHHHHHh---cc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESL---RD---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
....+++|.+..++++.+.+ .. ...+-+.|+|++|+||||+|+.+++.... .| +.++.+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~---~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--CE---EEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--CE---EEEeHHHHHH
Confidence 44677889887776655443 21 12345889999999999999999987642 22 3443322111
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc--ccccCCCCC------CC---cccccC
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL--DDIGIPFWD------GE---KQSVDN 285 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~--~~l~~~~~~------~~---~~~~~~ 285 (961)
. ... ........+.+........++++|+++....- ..+...... .. ...+..
T Consensus 84 ~--------------~~~--~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 M--------------FVG--VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp S--------------CCC--CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred H--------------hhh--hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 0 001 11222333334333345689999999543110 000000000 00 000012
Q ss_pred CCceEEEEEecchhhhhhc-C---CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCC-chHHHH
Q 002133 286 QGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGG-LPIAVS 357 (961)
Q Consensus 286 ~~gs~IlvTtR~~~v~~~~-~---~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~ 357 (961)
..+..||.||......... . .-...+.+...+.++-.+++..++......++. ....+++...| .+--+.
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHH
Confidence 3456677777655422111 1 123467888888888888888776532222221 12456777777 554443
No 212
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.62 E-value=0.00023 Score=75.26 Aligned_cols=146 Identities=14% Similarity=0.095 Sum_probs=87.9
Q ss_pred CchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhc--CCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCc
Q 002133 156 SRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKE--DLFDVVVDAEVTH-TPDWKEICGRIADQLGLEI 232 (961)
Q Consensus 156 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 232 (961)
|.++.++.+...+...+.+...++|+.|+||||+|+.+++....- .|.+. .+++.+. ...+.++ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 445567777777776667788999999999999999998753211 23443 4555443 3333332 33444443221
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcccccCCCceEEEEEecch-hhhhhcCCCCc
Q 002133 233 VRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQ-HVLRINMSNPR 309 (961)
Q Consensus 233 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~~ 309 (961)
. .+++-++|+|+++... ..+.+...+-. ..+.+.+|++|.+. .+... ....
T Consensus 79 ~-----------------~~~~kvviIdead~lt~~a~naLLk~LEe-------p~~~t~fIl~t~~~~kl~~t-I~SR- 132 (305)
T 2gno_A 79 E-----------------LYTRKYVIVHDCERMTQQAANAFLKALEE-------PPEYAVIVLNTRRWHYLLPT-IKSR- 132 (305)
T ss_dssp S-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHS-------CCTTEEEEEEESCGGGSCHH-HHTT-
T ss_pred c-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhC-------CCCCeEEEEEECChHhChHH-HHce-
Confidence 1 1356788999997652 33333222222 23466777666443 33222 2333
Q ss_pred eEEccCCCHHHHHHHHHHHh
Q 002133 310 IFSISTLADGEAKSLFEKIV 329 (961)
Q Consensus 310 ~~~l~~L~~~~s~~Lf~~~~ 329 (961)
.+++.++++++..+.+.+.+
T Consensus 133 ~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SEEEECCCCHHHHHHHHHHH
T ss_pred eEeCCCCCHHHHHHHHHHHh
Confidence 89999999999999998876
No 213
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00056 Score=75.23 Aligned_cols=179 Identities=12% Similarity=0.133 Sum_probs=100.8
Q ss_pred ccCCccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC
Q 002133 147 SVRGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (961)
Q Consensus 147 ~~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (961)
|.....++.|-++.+++|.+.+. -...+-|.++|++|+|||.+|+++++..... .+.++.+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~ 250 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQ 250 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhh
Confidence 34456788899988888776643 1235678999999999999999999987632 23444332
Q ss_pred CCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc----------------ccccCCCCC
Q 002133 214 TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL----------------DDIGIPFWD 277 (961)
Q Consensus 214 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~----------------~~l~~~~~~ 277 (961)
-.+ ...+ .....+..+...-+...+++|++|+++....- ..+...+
T Consensus 251 l~~--------------~~vG--ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~l-- 312 (434)
T 4b4t_M 251 LVQ--------------MYIG--EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQL-- 312 (434)
T ss_dssp GCS--------------SCSS--HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHH--
T ss_pred hhh--------------cccc--hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHh--
Confidence 110 0000 11223333333333346799999998643100 0000000
Q ss_pred CCcccccCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 278 GEKQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 278 ~~~~~~~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
..+....+..||.||.......... .-...+.+..-+.++-.++|+.++.......+.. ...|++.+.|.-
T Consensus 313 ---dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~s 387 (434)
T 4b4t_M 313 ---DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEFN 387 (434)
T ss_dssp ---TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSCC
T ss_pred ---hccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 0111334556666776654432222 1234688888888888888887764222212111 246777777754
No 214
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00097 Score=73.29 Aligned_cols=180 Identities=16% Similarity=0.199 Sum_probs=96.7
Q ss_pred cCCccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC
Q 002133 148 VRGYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (961)
Q Consensus 148 ~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (961)
.....++.|-++.+++|.+.+. -...+-|.++|++|+|||++|+++++..... .+.++.+.-
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l 242 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEF 242 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGT
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchh
Confidence 3456778898888877776553 1234568999999999999999999987632 244544432
Q ss_pred CCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccc------------cccCCCCCCCccc
Q 002133 215 PDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD------------DIGIPFWDGEKQS 282 (961)
Q Consensus 215 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~------------~l~~~~~~~~~~~ 282 (961)
.+ ...+ .....+..+....+...+++|++|+++....-. .....+-. ....
T Consensus 243 ~~--------------~~~G--e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~-~ldg 305 (428)
T 4b4t_K 243 VH--------------KYLG--EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLT-QMDG 305 (428)
T ss_dssp CC--------------SSCS--HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHH-HHHH
T ss_pred hc--------------cccc--hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHH-HhhC
Confidence 11 0000 112233344444444568999999987531100 00000000 0001
Q ss_pred ccCCCceEEEEEecchhhhhhc-C---CCCceEEccCCC-HHHHHHHHHHHhCCCC--CCCchhHHHHHHHHhhCCch
Q 002133 283 VDNQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLA-DGEAKSLFEKIVGDSA--KESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 283 ~~~~~gs~IlvTtR~~~v~~~~-~---~~~~~~~l~~L~-~~~s~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP 353 (961)
+....+..||.||......... . .-...+.+..+. .++-..+|..++.... ...++ ..|++.+.|.-
T Consensus 306 ~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 306 FDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp SCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred CCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 1244566777787655433111 1 112356776664 4555566666554322 22232 46777777754
No 215
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.56 E-value=3.4e-05 Score=72.05 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=34.9
Q ss_pred ccCCchHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 153 HFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.++|++..+.++.+.+. .....-|.|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999888888775 2333457899999999999999998764
No 216
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.56 E-value=0.0031 Score=69.41 Aligned_cols=112 Identities=14% Similarity=0.181 Sum_probs=61.0
Q ss_pred CCccCCcEEEeecCCCcccccCCCCCccCCccceeccccccccccccccccccccCcCcCCCccEEEeecCCCCcccCCh
Q 002133 772 EGFPRLKHLHVQNDPKILCIANSEGPVIFPLLQSLFLCNLILLEKVCGSQVQLTEDNRSFTNLRIINIEQCHRLKHLFPS 851 (961)
Q Consensus 772 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~ 851 (961)
.++.+|+.+.+..+ ++.+... ....+.+|+.+.+.. +++.+....+ ..+++|+.+.+.+ ..++.+...
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~~-aF~~~~~l~~i~l~~--~i~~i~~~aF------~~c~~L~~i~l~~-~~i~~I~~~ 304 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGSF-LLQNCTALKTLNFYA--KVKTVPYLLC------SGCSNLTKVVMDN-SAIETLEPR 304 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECTT-TTTTCTTCCEEEECC--CCSEECTTTT------TTCTTCCEEEECC-TTCCEECTT
T ss_pred cCCccceEEEcCCC--ccEeCcc-ccceeehhccccccc--cceecccccc------ccccccccccccc-cccceehhh
Confidence 45566666666543 4444333 444556666666532 3444433333 4566777777765 246666543
Q ss_pred HHHhhcccccEEeEeccccccccccccccCCccCCCcccccccccccceeccccccccccC
Q 002133 852 FMAEKLLQLEELEVTDCKILRMIVGEETDNHDHENGSMRVVNFNHLHSLALRRLPQLTSSG 912 (961)
Q Consensus 852 ~~~~~l~~L~~L~l~~c~~L~~i~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~L~~i~ 912 (961)
. +.++++|+.+.|.+ +++.|. ..++.++++|+++.+.. +++.|.
T Consensus 305 a-F~~c~~L~~i~lp~--~l~~I~------------~~aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 305 V-FMDCVKLSSVTLPT--ALKTIQ------------VYAFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp T-TTTCTTCCEEECCT--TCCEEC------------TTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred h-hcCCCCCCEEEcCc--cccEEH------------HHHhhCCCCCCEEEECC--ccCEEc
Confidence 3 36677777777643 355552 23456667777776632 345444
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.52 E-value=0.00087 Score=81.22 Aligned_cols=158 Identities=18% Similarity=0.258 Sum_probs=93.8
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCEEEE-EEecCCCCHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDVVVD-AEVTHTPDWKEICGR 223 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~~~~~~~~~~~~~ 223 (961)
...+.++||++++.++++.+......-+.|+|++|+|||++|+.+++....... ....+| ++.+.-.
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~-------- 254 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL-------- 254 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh--------
Confidence 345678999999999999998766677889999999999999999988643211 223332 2211110
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--------c---cccccCCCCCCCcccccCCCceEEE
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--------N---LDDIGIPFWDGEKQSVDNQGRWTLL 292 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~---~~~l~~~~~~~~~~~~~~~~gs~Il 292 (961)
.+... ..........+.+.+...++.+|++||+.... . .+.+ .++- ...+.++|
T Consensus 255 ----~~~~~--~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L-~~~l--------~~~~~~~I 319 (758)
T 1r6b_X 255 ----AGTKY--RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLI-KPLL--------SSGKIRVI 319 (758)
T ss_dssp ----CCCCC--SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHH-SSCS--------SSCCCEEE
T ss_pred ----ccccc--cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHH-HHHH--------hCCCeEEE
Confidence 00010 11334444455555544457899999997541 0 1112 1111 23455666
Q ss_pred EEecchhhhhh------cCCCCceEEccCCCHHHHHHHHHHHh
Q 002133 293 LASRDQHVLRI------NMSNPRIFSISTLADGEAKSLFEKIV 329 (961)
Q Consensus 293 vTtR~~~v~~~------~~~~~~~~~l~~L~~~~s~~Lf~~~~ 329 (961)
.+|........ .......+.+...+.++..+++....
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 66654432100 01111368899999999988887654
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.36 E-value=0.00048 Score=73.64 Aligned_cols=105 Identities=18% Similarity=0.332 Sum_probs=61.2
Q ss_pred ccCCchHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 153 HFPSRNPVFQKMMESLRDS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
.++|++..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++++....... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-VSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-HHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-HHH
Confidence 4679998888887777521 13478999999999999999999886432 12345566654332211 111
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
+ ++...... .. .....+.+.+.....-+|+||+++..
T Consensus 95 l---~g~~~~~~-~~-~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 95 L---IGAPPGYV-GY-EEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp H---HCCCTTST-TT-TTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred h---cCCCCccc-cc-cccchHHHHHHhCCCeEEEEeChhhc
Confidence 2 22211110 00 00012344444445579999999765
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.34 E-value=0.00053 Score=82.99 Aligned_cols=151 Identities=14% Similarity=0.198 Sum_probs=85.0
Q ss_pred CccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC----CCE-EEEEEecCCCCHHHHHHHH
Q 002133 150 GYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL----FDV-VVDAEVTHTPDWKEICGRI 224 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~~i 224 (961)
..+.++||+++++++.+.+......-+.++|++|+|||++|+.+++....... .+. .+.++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 45679999999999999997666666889999999999999999998632110 011 112222
Q ss_pred HHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccccccCCCCCCCcccccCCCceEEEEEecchhh----
Q 002133 225 ADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQHV---- 300 (961)
Q Consensus 225 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v---- 300 (961)
+....+ ........+.+.....++.+|++| ...+..+.+...+ ..+..++|.||.....
T Consensus 245 ----g~~~~G--~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l---------~~~~v~~I~at~~~~~~~~~ 307 (758)
T 3pxi_A 245 ----GTKYRG--EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL---------ARGELQCIGATTLDEYRKYI 307 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT---------TSSSCEEEEECCTTTTHHHH
T ss_pred ----cccccc--hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHH---------hcCCEEEEeCCChHHHHHHh
Confidence 000000 011122333333444567899999 2222222222222 2334566666654431
Q ss_pred h--hhcCCCCceEEccCCCHHHHHHHHHHHhC
Q 002133 301 L--RINMSNPRIFSISTLADGEAKSLFEKIVG 330 (961)
Q Consensus 301 ~--~~~~~~~~~~~l~~L~~~~s~~Lf~~~~~ 330 (961)
. .........+.+...+.++..+++.....
T Consensus 308 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 0 00011124689999999999999987553
No 220
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.32 E-value=0.0005 Score=66.74 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC
Q 002133 158 NPVFQKMMESLRD---SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR 234 (961)
Q Consensus 158 ~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 234 (961)
.+.++.+.+++.+ .....+.|+|+.|+||||||+.+++.......+. +++++ ..++...+........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~-- 90 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGK-- 90 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCch--
Confidence 3344444444432 3356899999999999999999999876332222 23333 3444444443332111
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEccccc
Q 002133 235 PDSLVEKANQLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 235 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 264 (961)
. . .+.+.+. +.-+|||||++.
T Consensus 91 ~-~------~~~~~~~--~~~llilDE~~~ 111 (180)
T 3ec2_A 91 D-T------KFLKTVL--NSPVLVLDDLGS 111 (180)
T ss_dssp C-S------HHHHHHH--TCSEEEEETCSS
T ss_pred H-H------HHHHHhc--CCCEEEEeCCCC
Confidence 0 1 2333333 356899999974
No 221
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.30 E-value=0.0047 Score=69.77 Aligned_cols=182 Identities=12% Similarity=0.126 Sum_probs=101.7
Q ss_pred CccccCCchHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 150 GYVHFPSRNPVFQKMMESLR-------------DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
....++|.+..++++.+++. ....+-|.|+|++|+|||++|+++++... . ..+.++++.
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~---~fv~vn~~~--- 273 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A---FFFLINGPE--- 273 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--S---EEEEEEHHH---
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--C---CEEEEEchH---
Confidence 34678999999888877764 13345689999999999999999987653 1 223444221
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc-------------ccccCCCCCCCcccc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL-------------DDIGIPFWDGEKQSV 283 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~-------------~~l~~~~~~~~~~~~ 283 (961)
+...+. + ........+.+....+++.+|+||+++....- ..+...+. ..
T Consensus 274 -------l~~~~~----g--~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld-----~~ 335 (489)
T 3hu3_A 274 -------IMSKLA----G--ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD-----GL 335 (489)
T ss_dssp -------HHTSCT----T--HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH-----HS
T ss_pred -------hhhhhc----c--hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh-----cc
Confidence 111110 0 11222233333333456789999999543110 00100000 01
Q ss_pred cCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCc-hHHHHH
Q 002133 284 DNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGL-PIAVST 358 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~ 358 (961)
....+.+||.||.......... .-...+.+...+.++-.+++..++.......+. ...++++.+.|. +-.+..
T Consensus 336 ~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~--~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVGADLAA 413 (489)
T ss_dssp CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC--CHHHHHHTCTTCCHHHHHH
T ss_pred ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh--hHHHHHHHccCCcHHHHHH
Confidence 1334567777776653221111 223468999999999999999887533221111 124567777775 444444
Q ss_pred H
Q 002133 359 I 359 (961)
Q Consensus 359 ~ 359 (961)
+
T Consensus 414 L 414 (489)
T 3hu3_A 414 L 414 (489)
T ss_dssp H
T ss_pred H
Confidence 4
No 222
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.30 E-value=0.0027 Score=71.05 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=97.9
Q ss_pred CccccCCchHHHHHHHHHhc---cC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCH
Q 002133 150 GYVHFPSRNPVFQKMMESLR---DS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (961)
.+.+++|.++.++++.+.+. .. -.+-+.|+|++|+|||++|+.+++.... .| +.++.+.-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~--~f---~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--PF---FHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC--CE---EEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC--Ce---eeCCHHHHHHH
Confidence 45678898887666555432 21 1345889999999999999999987642 22 34444432211
Q ss_pred HHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc----------------cccccCCCCCCCcc
Q 002133 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN----------------LDDIGIPFWDGEKQ 281 (961)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~ 281 (961)
. .+ ........+........+.+|+||+++.... ...+...+.
T Consensus 89 ~---------~g-------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld----- 147 (476)
T 2ce7_A 89 F---------VG-------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMD----- 147 (476)
T ss_dssp C---------TT-------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHH-----
T ss_pred H---------hc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHh-----
Confidence 0 00 0112222333333334679999999965311 011100000
Q ss_pred cccCCCceEEEEEecchhhhhhc-C---CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 282 SVDNQGRWTLLLASRDQHVLRIN-M---SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 282 ~~~~~~gs~IlvTtR~~~v~~~~-~---~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
.+....+..||.||......... . .-...+.+...+.++-.+++..++......++.. ...|++.+.|..
T Consensus 148 ~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~s 221 (476)
T 2ce7_A 148 GFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFV 221 (476)
T ss_dssp HSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCC
T ss_pred ccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCc
Confidence 00123466777777766443211 1 1233788888888888888887775432222211 345788888876
No 223
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.27 E-value=0.0004 Score=72.41 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=35.4
Q ss_pred CccccCCchHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 150 GYVHFPSRNPVFQKMMESLR---D---------SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
....++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++...
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 35668888776666555443 1 1233477999999999999999998765
No 224
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.18 E-value=0.00084 Score=66.52 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=55.2
Q ss_pred ccccCCch----HHHHHHHHHhccC----CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHH
Q 002133 151 YVHFPSRN----PVFQKMMESLRDS----NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 151 ~~~~~gr~----~~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (961)
.+.|++.+ ..++.+.+++... ..+.+.|+|++|+|||++|+.+++....+ ...++|++++ .+..
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFR 95 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHH
Confidence 34455533 3445555555432 12678999999999999999999987643 3345666543 4444
Q ss_pred HHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
.+...... . .. ..+.+.+.. . -+|||||++..
T Consensus 96 ~~~~~~~~----~-~~----~~~~~~~~~-~-~~lilDei~~~ 127 (202)
T 2w58_A 96 ELKHSLQD----Q-TM----NEKLDYIKK-V-PVLMLDDLGAE 127 (202)
T ss_dssp HHHHC-------C-CC----HHHHHHHHH-S-SEEEEEEECCC
T ss_pred HHHHHhcc----c-hH----HHHHHHhcC-C-CEEEEcCCCCC
Confidence 44432211 1 11 223333433 2 38999999653
No 225
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.09 E-value=0.0077 Score=64.78 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=93.5
Q ss_pred CCccccCCchHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 149 RGYVHFPSRNPVFQKMMESLRD-----SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
.....++|++..++.+...+.. .....+.++|+.|+||||||+.+++..... |. .....-.....++
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~---~~sg~~~~~~~~l--- 93 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH---VTSGPVLVKQGDM--- 93 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE---EEETTTCCSHHHH---
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE---EEechHhcCHHHH---
Confidence 4456788988877776665542 234679999999999999999999986421 11 1111111111111
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCCcc----------cc-cCCCceE
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGEKQ----------SV-DNQGRWT 290 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~----------~~-~~~~gs~ 290 (961)
..+...+ .++.++++|++.... ..+.+.......... .. ..-+...
T Consensus 94 -------------------~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 94 -------------------AAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -------------------HHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -------------------HHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1111111 133466777775431 111110000000000 00 0001122
Q ss_pred EE-EEecchhhhh-hcCCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHHH
Q 002133 291 LL-LASRDQHVLR-INMSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVSTI 359 (961)
Q Consensus 291 Il-vTtR~~~v~~-~~~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 359 (961)
++ .|++...+.. ..-.......+++.+.++-.+++.+.+..... .-..+.+..|++.+.|.|-.+..+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHH
Confidence 33 3444333221 11122246899999999999999887642111 122356789999999999755433
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.07 E-value=0.0022 Score=68.41 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=37.7
Q ss_pred cccCCchHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 152 VHFPSRNPVFQKMMESLRD--------------SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..++|+++.++.+...+.. .....+.++|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3478999988888777643 2345688999999999999999998764
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.89 E-value=0.0045 Score=69.78 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=36.6
Q ss_pred ccccCCchHHHHHHHHH---hccC--CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 151 YVHFPSRNPVFQKMMES---LRDS--NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~---l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...++|.++.++.+... +... ..+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46789999887754443 3332 235688999999999999999998875
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.74 E-value=0.0052 Score=72.96 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=96.2
Q ss_pred CccccCCchHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 150 GYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
...++.|-++.+++|.+.+. . ...+-|.++|++|+|||+||+++++.... ..+.++.+.
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~~~~v~~~~--- 273 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE--- 273 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----EEEEEEHHH---
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----eEEEEEhHH---
Confidence 34566777766666555442 1 23456899999999999999999976542 124444321
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccccc---------ccCCCCCCCcccccCCC
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLDD---------IGIPFWDGEKQSVDNQG 287 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~---------l~~~~~~~~~~~~~~~~ 287 (961)
+.... .+ .....+..+.+.-+...+.+|+||+++....-.. +...+.. ....+....
T Consensus 274 -------l~sk~----~g--ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~-~mdg~~~~~ 339 (806)
T 3cf2_A 274 -------IMSKL----AG--ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLT-LMDGLKQRA 339 (806)
T ss_dssp -------HHSSC----TT--HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHT-HHHHCCGGG
T ss_pred -------hhccc----ch--HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHH-HHhcccccC
Confidence 11000 00 1122333344433445689999999976421000 0000000 000011234
Q ss_pred ceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchH
Q 002133 288 RWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPI 354 (961)
Q Consensus 288 gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPL 354 (961)
+.-||.||.......... .-...+++..-+.++-.++|..+........+. -...|++++.|.--
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVG 408 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCCH
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCCH
Confidence 455666666544332212 223578888889988888888776532221111 13467788877753
No 229
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.73 E-value=0.0086 Score=68.88 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=35.5
Q ss_pred cccCCchHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 152 VHFPSRNPVFQKMMESLR------DSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..++|-++..+.+.+.+. .....++.++|++|+||||+|+.++....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446787777666654432 22456899999999999999999998874
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.64 E-value=0.043 Score=56.24 Aligned_cols=177 Identities=14% Similarity=0.160 Sum_probs=89.5
Q ss_pred CCccccCCchHHHHHHHHH---hcc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 149 RGYVHFPSRNPVFQKMMES---LRD---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
.....++|.++...++.+. +.. .-.+-+.|+|+.|+||||||+.++..... ..+.++..
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~---- 83 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS---- 83 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH----
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH----
Confidence 3456788887665554433 211 01123899999999999999999987641 22333321
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc----------------ccccCCCCCCCc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL----------------DDIGIPFWDGEK 280 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~----------------~~l~~~~~~~~~ 280 (961)
.+ .... .. .....+..+.+........++++|+++..... ..+...+..
T Consensus 84 --~~----~~~~-~~-----~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g--- 148 (254)
T 1ixz_A 84 --DF----VEMF-VG-----VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG--- 148 (254)
T ss_dssp --HH----HHSC-TT-----HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHT---
T ss_pred --HH----HHHH-hh-----HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhC---
Confidence 11 1100 00 11122233333332234589999999543110 011000000
Q ss_pred ccccCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 281 QSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 281 ~~~~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
.......-++.||.......... .-...+.+...+.++-.+++..++.......+. ....+++.+.|.-
T Consensus 149 --~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 149 --FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp --CCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred --CCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 00222344555666555442111 234578899999988888888776432211111 1235677776653
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.57 E-value=0.0025 Score=77.06 Aligned_cols=156 Identities=16% Similarity=0.209 Sum_probs=83.1
Q ss_pred cccCCchHHHHHHHHHhcc-------CC--ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLRD-------SN--VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICG 222 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 222 (961)
..++|.+..++.+...+.. .. ...+.++|++|+|||++|+.+++..... -...+.++++.-.+....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccccc--
Confidence 4578999988888877751 11 2268999999999999999999886421 233456665543211000
Q ss_pred HHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccc--ccccccCCCCCCC----cccccCCCceEEEEEec
Q 002133 223 RIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQI--NLDDIGIPFWDGE----KQSVDNQGRWTLLLASR 296 (961)
Q Consensus 223 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~----~~~~~~~~gs~IlvTtR 296 (961)
. ...+.+.++....-.|+||++.... ..+.+...+-.+. ...-......+||+||.
T Consensus 567 --------------~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 567 --------------S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp --------------C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred --------------c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0 0112222333344588999997541 1111110000000 00000224568888887
Q ss_pred chh-----h----h-----hhcCCCCceEEccCCCHHHHHHHHHHHh
Q 002133 297 DQH-----V----L-----RINMSNPRIFSISTLADGEAKSLFEKIV 329 (961)
Q Consensus 297 ~~~-----v----~-----~~~~~~~~~~~l~~L~~~~s~~Lf~~~~ 329 (961)
... + . .....-..++.+.+++.++-.+++...+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 310 0 0 0111223588999999999888877654
No 232
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.47 E-value=0.0088 Score=60.95 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=57.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc---------CCCCH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKED----LFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---------RPDSL 238 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 238 (961)
.-.+++|+|++|+|||||+..++....... .-..++|++....+...++ .++++.++.... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346899999999999999999998532211 1357889988776555544 344455554321 11122
Q ss_pred HH---HHHHHHHHHHcCCcEEEEEccccc
Q 002133 239 VE---KANQLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 239 ~~---~~~~l~~~l~~~kr~LlVlDdv~~ 264 (961)
.+ ....+.+.+...+.-+||+|++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 22 233455555545678899998754
No 233
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.45 E-value=0.012 Score=61.11 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=57.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC-----CCCHHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLRQAL 249 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l 249 (961)
++-|.|++|+||||||.+++.....+..=..++|++....++.. .+++++.+... ..+.++..-.+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999999998776543112467899988887754 36777766432 223333312333333
Q ss_pred ---HcCCcEEEEEcccccc
Q 002133 250 ---KKKKRVLVILDDIWTQ 265 (961)
Q Consensus 250 ---~~~kr~LlVlDdv~~~ 265 (961)
++++.-+||+|-|...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4457789999988654
No 234
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.43 E-value=0.012 Score=64.50 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=81.2
Q ss_pred CCCceeEEEeccCCCCCCCChhhhhCCCceeEEEecCCCCCCC-CccccCCcCCCEEEccCCCCCC--CccccCCCCCcE
Q 002133 532 QCTRLKLFLLFTEDSSLQIPNQFFDGMTELLVLHLTGIHFPSL-PLSLGSLINLRTLSFDCCHLED--VARVGDLAKLEI 608 (961)
Q Consensus 532 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~ 608 (961)
.+.+|+.+.+..+- ..+....|.++..|+.+.+..+ ++.+ ...+.++.+|+.+.+..+ +.. ...|.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 56666666665432 1345555667777777777654 4555 334667777777777543 333 256677777777
Q ss_pred EEeccCcCCccchh-hhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCC
Q 002133 609 LSFRNSHIEQLPEQ-IGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNS 662 (961)
Q Consensus 609 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 662 (961)
+.+.++.++.++.. +.++.+|+.+.+.. .++.+....|.++++|+.+.+..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 77777777777544 66777777777754 466666666777777777776543
No 235
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.34 E-value=0.014 Score=62.57 Aligned_cols=86 Identities=20% Similarity=0.283 Sum_probs=58.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc-----CCCCHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLRQ 247 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 247 (961)
-+++.|+|++|+||||||.+++......+ ..++|++....++.. .++.++.... ...+..+....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 46899999999999999999998765432 346788877766654 4555555432 12245555555555
Q ss_pred HHHcCCcEEEEEcccccc
Q 002133 248 ALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 248 ~l~~~kr~LlVlDdv~~~ 265 (961)
.++..+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 555455668999987543
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.34 E-value=0.099 Score=54.32 Aligned_cols=181 Identities=13% Similarity=0.131 Sum_probs=90.6
Q ss_pred CCccccCCchHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 149 RGYVHFPSRNPVFQKMMESLR---D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
....+++|.++...++.+... . .-.+-+.|+|+.|+||||||+.++..... ..+.++..
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~---- 107 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS---- 107 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH----
Confidence 345678898876655544332 1 01123899999999999999999987641 22333321
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccc------------cccccCCCCCCCccccc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQIN------------LDDIGIPFWDGEKQSVD 284 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------------~~~l~~~~~~~~~~~~~ 284 (961)
.+ .... .. .....+..+.+........++|+|++..... +......+.. ..+...
T Consensus 108 --~~----~~~~-~~-----~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~-~lsgg~ 174 (278)
T 1iy2_A 108 --DF----VEMF-VG-----VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-EMDGFE 174 (278)
T ss_dssp --HH----HHST-TT-----HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHH-HHTTCC
T ss_pred --HH----HHHH-hh-----HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHH-HHhCCC
Confidence 11 1100 00 1112223333333323568999999954210 0000000000 000000
Q ss_pred CCCceEEEEEecchhhhhhc----CCCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 285 NQGRWTLLLASRDQHVLRIN----MSNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 285 ~~~gs~IlvTtR~~~v~~~~----~~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
......++.||......... ..-...+.+...+.++-.+++..++.......+. ....+++.+.|..
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 12234455566654443111 1234578899999998888888776432211111 1235777777754
No 237
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.32 E-value=0.0094 Score=59.66 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=52.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC-----------ccC-CCCHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLE-----------IVR-PDSLV 239 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----------~~~-~~~~~ 239 (961)
.-.++.|+|.+|+||||+|..++. .. -..++|++.....+..++. ++.+..+.. ... .....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999999998 21 2467888877655655544 344333321 111 10112
Q ss_pred HHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 240 EKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 240 ~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
.....+...+.. +.-+||+|.+...
T Consensus 93 ~~~~~~~~l~~~-~~~lliiD~~~~~ 117 (220)
T 2cvh_A 93 RVIGSLKKTVDS-NFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHCCT-TEEEEEEECCCCC
T ss_pred HHHHHHHHHhhc-CCCEEEEcCcHHH
Confidence 233333333322 4678999987543
No 238
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.31 E-value=0.019 Score=61.39 Aligned_cols=92 Identities=25% Similarity=0.339 Sum_probs=60.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc---------CCCCH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKED----LFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---------RPDSL 238 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 238 (961)
.-.++.|+|.+|+||||+|.+++....... .-..++|++....++..++. ++++.++.+.. ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 346899999999999999999987643211 02468899988877776654 44566655421 11122
Q ss_pred H---HHHHHHHHHHHc-CCcEEEEEccccc
Q 002133 239 V---EKANQLRQALKK-KKRVLVILDDIWT 264 (961)
Q Consensus 239 ~---~~~~~l~~~l~~-~kr~LlVlDdv~~ 264 (961)
. +....+...+.+ .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 2 234455556654 5678899998754
No 239
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.30 E-value=0.01 Score=71.87 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=58.9
Q ss_pred ccCCchHHHHHHHHHhcc---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 153 HFPSRNPVFQKMMESLRD---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
.++|.++.++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++...+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC----
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh----
Confidence 477998888887776641 1123689999999999999999998773 2345566554322100
Q ss_pred HHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 224 IADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 224 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
+.+.+|.+. +- ...+....+.+.+.......|+||++...
T Consensus 530 ~~~l~g~~~-g~-~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 VSRLIGAPP-GY-VGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CSSSCCCCS-CS-HHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred HhhhcCCCC-CC-cCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 000111110 00 00111122344444445689999999764
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.30 E-value=0.0026 Score=66.37 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=45.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEe--cCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV--THTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (961)
-+++.|+|++|+||||||.+++..... .++|++. .+..+. .. .+.......+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~---------------~~-~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSG---------------YN-TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTT---------------CB-CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhh---------------hh-cCHHHHHHHHHHHHh
Confidence 356789999999999999999886221 2346666 222110 01 245566666777776
Q ss_pred cCCcEEEEEccccc
Q 002133 251 KKKRVLVILDDIWT 264 (961)
Q Consensus 251 ~~kr~LlVlDdv~~ 264 (961)
. .+ +||+|++..
T Consensus 182 ~-~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 Q-HR-VIVIDSLKN 193 (331)
T ss_dssp H-CS-EEEEECCTT
T ss_pred h-CC-EEEEecccc
Confidence 5 44 999998854
No 241
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.23 E-value=0.02 Score=61.62 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=59.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc------------CC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKED----LFDVVVDAEVTHTPDWKEICGRIADQLGLEIV------------RP 235 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~ 235 (961)
.-.++.|+|.+|+||||+|.+++....... .-..++|++....++..++. +++..++.... ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 446899999999999999999988643211 13478899988877776654 44555555321 11
Q ss_pred CCHHHHHHHHHHHHHc--CCcEEEEEccccc
Q 002133 236 DSLVEKANQLRQALKK--KKRVLVILDDIWT 264 (961)
Q Consensus 236 ~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~ 264 (961)
....+....+...+.+ .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1122334445555554 5667889997754
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.09 E-value=0.014 Score=60.63 Aligned_cols=158 Identities=11% Similarity=0.144 Sum_probs=81.3
Q ss_pred CccccCCchHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 150 GYVHFPSRNPVFQKMMESLR----D---------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
...++.|-++.+++|.+.+. . .-.+-+.++|++|+||||||+.++..... ..+++....-.+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 35566677776666655432 0 11123899999999999999999987542 234454332111
Q ss_pred --HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccccccc---ccc--CCCCCCCcccc---cCC
Q 002133 217 --WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINLD---DIG--IPFWDGEKQSV---DNQ 286 (961)
Q Consensus 217 --~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~---~l~--~~~~~~~~~~~---~~~ 286 (961)
..+ ....+..+.+......+.++++|+++...... ... ..........+ ...
T Consensus 83 ~~~~~------------------~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 83 MYVGE------------------SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp STTHH------------------HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred hhhhH------------------HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 000 11122233333323357899999997531100 000 00000000001 122
Q ss_pred CceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhC
Q 002133 287 GRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVG 330 (961)
Q Consensus 287 ~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~ 330 (961)
...-++.+|....+..... .-...+.+...+.++-.++++.+..
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 3455666776665542211 2345678888888888888887764
No 243
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.06 E-value=0.022 Score=61.51 Aligned_cols=87 Identities=21% Similarity=0.247 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc-----CCCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 246 (961)
.-+++.|.|.+|+||||||.+++......+ ..++|++....++.. .++.++.+.. ...+..+....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 345889999999999999999988765432 367899988776643 2455555422 1224455555555
Q ss_pred HHHHcCCcEEEEEcccccc
Q 002133 247 QALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~~~ 265 (961)
...+..+--+||+|.+...
T Consensus 146 ~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHTTTCCSEEEEECTTTC
T ss_pred HHHhcCCCCEEEEeChHHh
Confidence 4444445568999988543
No 244
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.00 E-value=0.023 Score=61.20 Aligned_cols=86 Identities=21% Similarity=0.265 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC-----CCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 246 (961)
.-+++.|.|.+|+||||||.+++......+ ..++|++....++.. .++.++..... ..+..+....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999999998765432 357899988776643 24555554221 123344444444
Q ss_pred HHHHcCCcEEEEEccccc
Q 002133 247 QALKKKKRVLVILDDIWT 264 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~~ 264 (961)
...+..+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 333344556899998754
No 245
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.99 E-value=0.021 Score=61.01 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=58.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcC---------CC-----CEEEEEEecCCCCHHHHHHHHHHHhCCCcc----
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKED---------LF-----DVVVDAEVTHTPDWKEICGRIADQLGLEIV---- 233 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---- 233 (961)
.-.++.|+|.+|+||||+|.+++....... .. ..++|++....++..++.. +++.++.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 346899999999999999999987632110 11 4678999888877776653 4555655421
Q ss_pred -----CCCCHH---HHHHHHHHHHHc-CCcEEEEEccccc
Q 002133 234 -----RPDSLV---EKANQLRQALKK-KKRVLVILDDIWT 264 (961)
Q Consensus 234 -----~~~~~~---~~~~~l~~~l~~-~kr~LlVlDdv~~ 264 (961)
...+.. +....+...+.+ .+.-+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 111222 234445555554 4557888887643
No 246
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.98 E-value=0.046 Score=61.51 Aligned_cols=173 Identities=13% Similarity=0.155 Sum_probs=91.3
Q ss_pred CccccCCchHHHHHHHHHh---ccC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCH
Q 002133 150 GYVHFPSRNPVFQKMMESL---RDS---------NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (961)
.+.+++|.++.+.++.+.. ... -.+-+.|+|++|+||||||+.++..... ..+.++.+.-.+.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHHh
Confidence 4567889887766555443 221 1234899999999999999999987541 2344444321110
Q ss_pred HHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHc---CCcEEEEEccccccccc----------------ccccCCCCCC
Q 002133 218 KEICGRIADQLGLEIVRPDSLVEKANQLRQALKK---KKRVLVILDDIWTQINL----------------DDIGIPFWDG 278 (961)
Q Consensus 218 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~---~kr~LlVlDdv~~~~~~----------------~~l~~~~~~~ 278 (961)
........+...+.. ....++++|+++....- ..+...+
T Consensus 104 -------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L--- 161 (499)
T 2dhr_A 104 -------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM--- 161 (499)
T ss_dssp -------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG---
T ss_pred -------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh---
Confidence 000011122222222 13479999999653110 0110000
Q ss_pred CcccccCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHhhCCch
Q 002133 279 EKQSVDNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLP 353 (961)
Q Consensus 279 ~~~~~~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 353 (961)
+......+..|+.||.......... .-...+.++..+.++-.+++..++......++. ....|++...|..
T Consensus 162 --dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 162 --DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp --GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred --cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 0011223445666666655432111 123478899999988888887766432211111 1345777777765
No 247
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.95 E-value=0.026 Score=60.62 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=56.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC-----CCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 246 (961)
.-+++.|+|.+|+||||||.+++......+ ..++|++....++.. .++.++..... ..+..+....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 346899999999999999999987765432 357899888766643 24556644321 223444444444
Q ss_pred HHHHcCCcEEEEEcccccc
Q 002133 247 QALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~~~ 265 (961)
......+.-+||+|.+...
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 4443445678999988653
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.68 E-value=0.038 Score=57.85 Aligned_cols=86 Identities=20% Similarity=0.107 Sum_probs=48.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (961)
...+++++|++|+||||++..++.....+... .+..+.... .....+.+....+..+.+.....+..+.. .....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~-~al~~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQ-QAKELFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHH-HHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHH-HHHHHhc
Confidence 45699999999999999999999887642222 244444332 23344445555555555432222322222 2222232
Q ss_pred cCCcEEEEEcc
Q 002133 251 KKKRVLVILDD 261 (961)
Q Consensus 251 ~~kr~LlVlDd 261 (961)
+.=++++|-
T Consensus 182 --~~dlvIiDT 190 (296)
T 2px0_A 182 --EYDHVFVDT 190 (296)
T ss_dssp --GSSEEEEEC
T ss_pred --CCCEEEEeC
Confidence 345778883
No 249
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.67 E-value=0.02 Score=60.46 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=34.5
Q ss_pred HHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHHHHh-hcCCCCEEEEEEe
Q 002133 159 PVFQKMMESLRDS---NVNMIGLYGMGGVGKTTLVKVVARQVV-KEDLFDVVVDAEV 211 (961)
Q Consensus 159 ~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~ 211 (961)
..+..+.+++... ....+.|+|+.|+|||+||+++++... .+ .+ .++++++
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g~-~v~~~~~ 189 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GV-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-CC-CEEEEEH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEH
Confidence 3444555555431 246789999999999999999999876 43 23 3445544
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.66 E-value=0.047 Score=54.95 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=51.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc-------------------
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV------------------- 233 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------- 233 (961)
-.+++|+|++|+|||||++.++......+ ..++|+.... ...++...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 36899999999999999999997655332 2456665443 3444443332 3332211
Q ss_pred ----CCCCHHHHHHHHHHHHHcCC--cEEEEEcccccc
Q 002133 234 ----RPDSLVEKANQLRQALKKKK--RVLVILDDIWTQ 265 (961)
Q Consensus 234 ----~~~~~~~~~~~l~~~l~~~k--r~LlVlDdv~~~ 265 (961)
...+..+....+...+...+ ..+||+|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 01133444455555543323 349999988643
No 251
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.65 E-value=0.015 Score=56.38 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=54.7
Q ss_pred hCCCceeEEEecCC-CCC-----CCCccccCCcCCCEEEccCCCCCCC------ccccCCCCCcEEEeccCcCC-----c
Q 002133 556 DGMTELLVLHLTGI-HFP-----SLPLSLGSLINLRTLSFDCCHLEDV------ARVGDLAKLEILSFRNSHIE-----Q 618 (961)
Q Consensus 556 ~~l~~L~~L~L~~~-~~~-----~lp~~~~~l~~L~~L~L~~~~l~~~------~~~~~l~~L~~L~l~~~~l~-----~ 618 (961)
.+-+.|+.|+|+++ .+. .+-..+..-..|+.|+|++|.+.+. ..+..-+.|++|+|++|.|+ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455666666653 443 1233344445666666666666541 23334456677777776665 1
Q ss_pred cchhhhcCCCcCEEecCCCC--CCcccC----hHHHhcCccCCEEEccCC
Q 002133 619 LPEQIGNLTRLKLLDLSNCS--KLKVIK----PEVISRLSRLNELYMGNS 662 (961)
Q Consensus 619 lp~~~~~l~~L~~L~l~~~~--~l~~~~----~~~l~~l~~L~~L~l~~~ 662 (961)
+-..+..-+.|++|+|++|. .++.-. ...+..-+.|.+|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 22334444557777776531 222110 122445566666666654
No 252
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.57 E-value=0.019 Score=70.15 Aligned_cols=61 Identities=18% Similarity=0.373 Sum_probs=42.6
Q ss_pred cccCCchHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC
Q 002133 152 VHFPSRNPVFQKMMESLRD-------S--NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (961)
..++|++..+..+...+.. . ....+.|+|+.|+|||++|+.+++.....+ ...+.++++..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~~ 627 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEY 627 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTTC
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhc
Confidence 3578999988888777642 1 124789999999999999999998764211 12345555543
No 253
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.57 E-value=0.004 Score=57.55 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=32.6
Q ss_pred cccCCchHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 152 VHFPSRNPVFQKMMESLRD--SNVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
..++|+++.+.++.+.+.. ....-|.|+|..|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 3578999888888777652 23345779999999999999999764
No 254
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.50 E-value=0.036 Score=60.59 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=57.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc----CCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc---------CCCCH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKE----DLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---------RPDSL 238 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 238 (961)
.-.++.|+|++|+|||||+..++-..... ..-..++|++....+...++ +.+++.++.... .....
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 34689999999999999999876443211 12346889988776665554 446666665321 11122
Q ss_pred ---HHHHHHHHHHHHcCCcEEEEEccccc
Q 002133 239 ---VEKANQLRQALKKKKRVLVILDDIWT 264 (961)
Q Consensus 239 ---~~~~~~l~~~l~~~kr~LlVlDdv~~ 264 (961)
.+....+.+.+...+.-+||+|.+..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22334444555545678889997644
No 255
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.47 E-value=0.012 Score=62.00 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+.+.++|++|+|||++|+++++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999999875
No 256
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.46 E-value=0.075 Score=58.40 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
...+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999887654
No 257
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.30 E-value=0.052 Score=54.55 Aligned_cols=91 Identities=23% Similarity=0.228 Sum_probs=53.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc---C-CCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc---------CCCCH-
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKE---D-LFDVVVDAEVTHTPDWKEICGRIADQLGLEIV---------RPDSL- 238 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 238 (961)
-.+++|+|+.|+|||||++.++...... . .-...+|+.......... ...+.+..+.... .....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 4689999999999999999998754321 1 134578887665444333 3344444443211 01111
Q ss_pred --HHHHHHHHHHHH-----cCCcEEEEEccccc
Q 002133 239 --VEKANQLRQALK-----KKKRVLVILDDIWT 264 (961)
Q Consensus 239 --~~~~~~l~~~l~-----~~kr~LlVlDdv~~ 264 (961)
......+...+. ..+.-+||+|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 112344445554 44677899998654
No 258
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.27 E-value=0.092 Score=58.04 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=51.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEec-CCCCHHHHHHHHHHHhCCCccCC---CCHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT-HTPDWKEICGRIADQLGLEIVRP---DSLVEKANQLRQ 247 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 247 (961)
..++|.++|.+|+||||+|..++.....++... +.-++.. +.....+.+.......+++.... .+..+......+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~k-Vllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKK-VLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCC-EEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCe-EEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 467999999999999999999998887641233 3344443 23334444444455555442221 133444344444
Q ss_pred HHHcCCcEEEEEccc
Q 002133 248 ALKKKKRVLVILDDI 262 (961)
Q Consensus 248 ~l~~~kr~LlVlDdv 262 (961)
.+....-=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 444222236677764
No 259
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.27 E-value=0.069 Score=56.61 Aligned_cols=52 Identities=23% Similarity=0.198 Sum_probs=39.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
.-.++.|.|.+|+||||+|.+++.....++ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999998766433 567787765 4566776666654
No 260
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.17 E-value=0.015 Score=60.16 Aligned_cols=62 Identities=10% Similarity=0.104 Sum_probs=39.8
Q ss_pred ccccCCchHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC
Q 002133 151 YVHFPSRNPVFQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT 214 (961)
Q Consensus 151 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 214 (961)
+..++|++..+.++.+.+. ......|.|+|..|+|||++|+.+++...... ...+.++++..
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~--~~~~~v~~~~~ 68 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ--GPFISLNCAAL 68 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT--SCEEEEEGGGS
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC--CCeEEEecCCC
Confidence 4567899988888776664 22335678999999999999999997654211 12355665543
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.11 E-value=0.023 Score=55.90 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 156 SRNPVFQKMMESLRD---SNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 156 gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.|++.++++.+.+.. ....+|+|+|..|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355667777777653 34568999999999999999999987654
No 262
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.05 E-value=0.13 Score=55.40 Aligned_cols=158 Identities=10% Similarity=-0.037 Sum_probs=93.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALK 250 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 250 (961)
.-.++..++|+.|.||++.|..+....... .|+....+.+....++.++...+. ..=.
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~pl 73 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQ---------------------AMSL 73 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHH---------------------HHHH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhc---------------------CcCC
Confidence 445688999999999999999998876543 354332233333344444332221 1101
Q ss_pred cCCcEEEEEccccc-c--cccccccCCCCCCCcccccCCCceEEEEEecc-------hhhhhhcCCCCceEEccCCCHHH
Q 002133 251 KKKRVLVILDDIWT-Q--INLDDIGIPFWDGEKQSVDNQGRWTLLLASRD-------QHVLRINMSNPRIFSISTLADGE 320 (961)
Q Consensus 251 ~~kr~LlVlDdv~~-~--~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~-------~~v~~~~~~~~~~~~l~~L~~~~ 320 (961)
-+++-++|+|++.. . ..++.+...+.. -.+++.+|++|.. ..+..........++..+++.++
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~-------p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~ 146 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGL-------LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQ 146 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTT-------CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhc-------CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHH
Confidence 13567889999865 2 334444222221 2346676666533 12322223445689999999999
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHhhCCchHHHHH
Q 002133 321 AKSLFEKIVGDSAKESDCRAIGVEIVGKCGGLPIAVST 358 (961)
Q Consensus 321 s~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 358 (961)
....+.+.+......-+ .+.+..+++.++|.+.++..
T Consensus 147 l~~~l~~~~~~~g~~i~-~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 147 LPRWVAARAKQLNLELD-DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHHHTTCEEC-HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHhchHHHHHHH
Confidence 88888877643221111 34567899999998877654
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.00 E-value=0.022 Score=56.38 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 159 PVFQKMMESLRD--SNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 159 ~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
+.+++|.+.+.. ....+|+|+|+.|.|||||++.+......
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455666666653 45679999999999999999999988764
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.00 E-value=0.021 Score=68.95 Aligned_cols=155 Identities=13% Similarity=0.150 Sum_probs=84.1
Q ss_pred CccccCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 150 GYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
...+++|.++.++++.+++.. .....|.|+|++|+||||||+.++..... . .+.++...
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~--~---~i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--F---FFLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC--E---EEEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--c---EEEEEchH---
Confidence 456788988877777766531 23457999999999999999999876431 1 23343211
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEccccccccc-------------ccccCCCCCCCcccc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQINL-------------DDIGIPFWDGEKQSV 283 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~-------------~~l~~~~~~~~~~~~ 283 (961)
+. + .... ........+.+........++++|++.....- ..+...+ + ..
T Consensus 274 -------l~---~-~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll-~----g~ 335 (806)
T 1ypw_A 274 -------IM---S-KLAG--ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM-D----GL 335 (806)
T ss_dssp -------HS---S-SSTT--HHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHH-H----SS
T ss_pred -------hh---h-hhhh--hHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHh-h----hh
Confidence 10 0 0000 11222333333333346789999999543110 0000000 0 00
Q ss_pred cCCCceEEEEEecchhhhhhcC----CCCceEEccCCCHHHHHHHHHHHhC
Q 002133 284 DNQGRWTLLLASRDQHVLRINM----SNPRIFSISTLADGEAKSLFEKIVG 330 (961)
Q Consensus 284 ~~~~gs~IlvTtR~~~v~~~~~----~~~~~~~l~~L~~~~s~~Lf~~~~~ 330 (961)
....+..+|.||.......... .-...+.+...+.++-.+++..++.
T Consensus 336 ~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 1233455666665543221111 1224577888888888888887664
No 265
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.86 E-value=0.066 Score=54.61 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.-.+++|+|+.|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999843
No 266
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.84 E-value=0.12 Score=56.79 Aligned_cols=58 Identities=24% Similarity=0.238 Sum_probs=36.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLE 231 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 231 (961)
..++|.++|++|+||||++..++.....++ .. +..++... .+...+.+.......+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-~k-Vllv~~D~~r~~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-YK-VGLVAADVYRPAAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT-CC-EEEEEECCSCHHHHHHHHHHHHTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-Ce-EEEEecCccchhHHHHHHHHHHhcCCc
Confidence 457999999999999999999998887543 32 33333321 122333444445555554
No 267
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.77 E-value=0.048 Score=58.06 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=54.1
Q ss_pred HHHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC-CCCEEEEEEecCCC-CHHHHHHHHHHHhCCC---ccCCC
Q 002133 163 KMMESLR-DSNVNMIGLYGMGGVGKTTLVKVVARQVVKED-LFDVVVDAEVTHTP-DWKEICGRIADQLGLE---IVRPD 236 (961)
Q Consensus 163 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~---~~~~~ 236 (961)
++++.+. -..-..++|+|..|+|||||++.+.+....++ .++ ++++-+.+.. .+.+ +.+.+... ....+
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~----~~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTE----MQRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHH----HHTTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHH----HHHHhCeEEEEeCCCC
Confidence 3444444 23445799999999999999999987764321 233 4457777654 2222 33332110 00011
Q ss_pred CHHHH------HHHHHHHHH-cCCcEEEEEcccccc
Q 002133 237 SLVEK------ANQLRQALK-KKKRVLVILDDIWTQ 265 (961)
Q Consensus 237 ~~~~~------~~~l~~~l~-~~kr~LlVlDdv~~~ 265 (961)
..... .-.+-+++. +++.+||++||+..-
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 11111 111233343 478999999999654
No 268
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.71 E-value=0.02 Score=62.09 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=36.8
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+..++|.+..+..+..........-+.|+|++|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34567899988766554444333334488999999999999999998754
No 269
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.70 E-value=0.14 Score=56.36 Aligned_cols=101 Identities=21% Similarity=0.283 Sum_probs=64.3
Q ss_pred HHHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCC------c--
Q 002133 163 KMMESLR-DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLE------I-- 232 (961)
Q Consensus 163 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~-- 232 (961)
+.++.+. -.+-..++|+|..|+|||+|++++.+.... .+-+.++++-+.+.. ...++.+++...-... .
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 3444444 123356899999999999999999987642 345778888887764 5567777776653332 0
Q ss_pred ---cC-CCCH------HHHHHHHHHHHHc--CCcEEEEEccccc
Q 002133 233 ---VR-PDSL------VEKANQLRQALKK--KKRVLVILDDIWT 264 (961)
Q Consensus 233 ---~~-~~~~------~~~~~~l~~~l~~--~kr~LlVlDdv~~ 264 (961)
.. .+.. ....-.+-++++. ++.+||++||+..
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 01 1111 1122335566654 7899999999854
No 270
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.67 E-value=0.023 Score=54.93 Aligned_cols=105 Identities=13% Similarity=-0.001 Sum_probs=67.7
Q ss_pred CCceeEEEeccC-CCCCCC---ChhhhhCCCceeEEEecCCCCC-----CCCccccCCcCCCEEEccCCCCCCC------
Q 002133 533 CTRLKLFLLFTE-DSSLQI---PNQFFDGMTELLVLHLTGIHFP-----SLPLSLGSLINLRTLSFDCCHLEDV------ 597 (961)
Q Consensus 533 ~~~L~~L~l~~n-~~~~~~---~~~~~~~l~~L~~L~L~~~~~~-----~lp~~~~~l~~L~~L~L~~~~l~~~------ 597 (961)
-+.|+.|+|++| .+...- ....+..-+.|+.|+|++|.+. .+...+..-+.|++|+|++|.|.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 355667777664 443210 1112345567888888888876 3444455567889999999888762
Q ss_pred ccccCCCCCcEEEeccC---cCC-----ccchhhhcCCCcCEEecCCC
Q 002133 598 ARVGDLAKLEILSFRNS---HIE-----QLPEQIGNLTRLKLLDLSNC 637 (961)
Q Consensus 598 ~~~~~l~~L~~L~l~~~---~l~-----~lp~~~~~l~~L~~L~l~~~ 637 (961)
..+..-..|++|+|++| .+. .+-..+..-+.|+.|+++.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 45556677999999865 333 23344566678999999873
No 271
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.61 E-value=0.13 Score=53.82 Aligned_cols=88 Identities=23% Similarity=0.203 Sum_probs=52.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCccCC---CCHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHT-PDWKEICGRIADQLGLEIVRP---DSLVEKANQLRQA 248 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~ 248 (961)
..+++++|.+|+||||++..++.....++ ..+.+++.... +...+.++...+..+++.... .+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 57899999999999999999998876532 23455554422 233344455556666543221 2444444445555
Q ss_pred HHcCCcEEEEEccc
Q 002133 249 LKKKKRVLVILDDI 262 (961)
Q Consensus 249 l~~~kr~LlVlDdv 262 (961)
++...-=++++|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54223237788854
No 272
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.60 E-value=0.082 Score=58.27 Aligned_cols=90 Identities=20% Similarity=0.303 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCC------ccCCCCHH-H-----
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLE------IVRPDSLV-E----- 240 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~-~----- 240 (961)
..++|+|..|+|||||++.+......+ +-+.++++.+.+.. ...++..++...-.+. ....++.. .
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 358999999999999999999876643 23455677776654 3445555554321110 00011111 1
Q ss_pred HHHHHHHHHH--cCCcEEEEEccccc
Q 002133 241 KANQLRQALK--KKKRVLVILDDIWT 264 (961)
Q Consensus 241 ~~~~l~~~l~--~~kr~LlVlDdv~~ 264 (961)
..-.+-++++ +++++||++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1123455554 37899999999954
No 273
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.58 E-value=0.13 Score=52.14 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=32.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGR 223 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 223 (961)
-.++.|.|.+|+||||+|.+++...... =..++|++.... ..++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC--HHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH
Confidence 4589999999999999999988765432 235677775543 3444333
No 274
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.55 E-value=0.081 Score=56.90 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCC----CEEEEEEecCCCCHHHHHHHHHHHhCCCcc---------CCCC-
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLF----DVVVDAEVTHTPDWKEICGRIADQLGLEIV---------RPDS- 237 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~- 237 (961)
.-+++.|+|+.|+|||||+..++......... ..++|++....+...++ ..+.+..+.... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45689999999999999999999875211011 24588887665544433 345554443211 0101
Q ss_pred --HHHHHHHHHHHHHc-----CCcEEEEEcccccc
Q 002133 238 --LVEKANQLRQALKK-----KKRVLVILDDIWTQ 265 (961)
Q Consensus 238 --~~~~~~~l~~~l~~-----~kr~LlVlDdv~~~ 265 (961)
..+.+..+...+.. .+.-+||+|.+...
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 12234444444443 46789999987543
No 275
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.40 E-value=0.034 Score=58.68 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=36.4
Q ss_pred ccCCchHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 153 HFPSRNPVFQKMMESLRD--SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.++|+...+.++.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 578999888888877652 334457899999999999999999864
No 276
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.39 E-value=0.097 Score=57.78 Aligned_cols=91 Identities=21% Similarity=0.322 Sum_probs=61.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCC--------c----cC-CCC-
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLE--------I----VR-PDS- 237 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~----~~-~~~- 237 (961)
-..++|.|..|+|||+|+.++.+.... .+-+.++++-+.+.. ...++.+++...-..+ . .. .+.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 345899999999999999999987643 345788888887765 5667777776542222 0 00 011
Q ss_pred -----HHHHHHHHHHHHHc--CCcEEEEEccccc
Q 002133 238 -----LVEKANQLRQALKK--KKRVLVILDDIWT 264 (961)
Q Consensus 238 -----~~~~~~~l~~~l~~--~kr~LlVlDdv~~ 264 (961)
.....-.+-++++. ++.+|+++||+..
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11223345566664 7899999999854
No 277
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.37 E-value=0.027 Score=52.26 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=30.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (961)
.-..++|+|+.|+|||||++.++...... .+ .+++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 55689999999999999999999987642 22 245665543
No 278
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.37 E-value=0.15 Score=53.34 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=50.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCccC---CCCHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEIVR---PDSLVEKANQLRQ 247 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 247 (961)
..++++|+|.+|+||||++..++......+ ..+.+++..-.. .....+..+.+..+..... ..+..+.......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 446899999999999999999998876532 234455443221 1122233445555554331 1233444333444
Q ss_pred HHHcCCcEEEEEccc
Q 002133 248 ALKKKKRVLVILDDI 262 (961)
Q Consensus 248 ~l~~~kr~LlVlDdv 262 (961)
.+...+.=+||+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 442123457788864
No 279
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.37 E-value=0.19 Score=53.24 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=37.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
-.++.|.|.+|+||||+|..++...... =..++|++.. .+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHHH
Confidence 3589999999999999999999887652 2356676553 4566776666543
No 280
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.34 E-value=0.069 Score=48.07 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=21.1
Q ss_pred EEEecCCCCC--CCCccccCCcCCCEEEccCCCCCCC--ccccCCCCCcEEEeccC
Q 002133 563 VLHLTGIHFP--SLPLSLGSLINLRTLSFDCCHLEDV--ARVGDLAKLEILSFRNS 614 (961)
Q Consensus 563 ~L~L~~~~~~--~lp~~~~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l~~~ 614 (961)
.++.+++.++ .+|..+ -.+|++|+|++|+|+.+ ..|..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4444555554 444322 12344444444444441 23344444444444444
No 281
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.32 E-value=0.1 Score=54.67 Aligned_cols=88 Identities=23% Similarity=0.253 Sum_probs=49.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCccCC---CCHHHH-HHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIADQLGLEIVRP---DSLVEK-ANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~---~~~~~~-~~~l~ 246 (961)
...+++|+|++|+||||++..++......+ ..+.++...... ...+-+...++..+++.... .+.... ...+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 457899999999999999999998876532 234455443211 12223445556666543221 122222 22344
Q ss_pred HHHHcCCcEEEEEccc
Q 002133 247 QALKKKKRVLVILDDI 262 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv 262 (961)
..+.. +.-++|+|..
T Consensus 181 ~a~~~-~~dvvIiDtp 195 (306)
T 1vma_A 181 HALAR-NKDVVIIDTA 195 (306)
T ss_dssp HHHHT-TCSEEEEEEC
T ss_pred HHHhc-CCCEEEEECC
Confidence 43443 3347788855
No 282
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.24 E-value=0.42 Score=50.54 Aligned_cols=59 Identities=25% Similarity=0.294 Sum_probs=39.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCC
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLE 231 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 231 (961)
....+++|+|+.|+||||+++.++...+..+ . .+.++...- .....+.++...+..++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~-g-~V~l~g~D~~r~~a~eql~~~~~~~gv~ 186 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG-F-SVVIAASDTFRAGAIEQLEEHAKRIGVK 186 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT-C-CEEEEEECCSSTTHHHHHHHHHHHTTCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC-C-EEEEEeecccccchHHHHHHHHHHcCce
Confidence 4567999999999999999999998876532 2 233443321 223445556666666653
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.22 E-value=0.028 Score=53.57 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 284
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.20 E-value=0.027 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+|.|+|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999988754
No 285
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.16 E-value=0.11 Score=67.51 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=59.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCc-----cCCCCHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEI-----VRPDSLVEKANQL 245 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 245 (961)
...+++.|+|++|+|||+||.++......+ =..++|+++...++... ++.++.+. ......++....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 356789999999999999999998876543 23567888888776655 44555331 1222344555556
Q ss_pred HHHHHcCCcEEEEEcccc
Q 002133 246 RQALKKKKRVLVILDDIW 263 (961)
Q Consensus 246 ~~~l~~~kr~LlVlDdv~ 263 (961)
.+..++.+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 666566677899999985
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.15 E-value=0.031 Score=54.87 Aligned_cols=27 Identities=44% Similarity=0.433 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..++|.|+|+.|+||||+|+.++....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998764
No 287
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.11 E-value=0.034 Score=59.62 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=37.3
Q ss_pred cccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 152 VHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..++|+++.++.+...+... .-+.++|++|+|||++|+.+++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45789999998888777653 3588999999999999999988654
No 288
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.10 E-value=0.39 Score=53.91 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=46.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCccC---CCCHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH-TPDWKEICGRIADQLGLEIVR---PDSLVEKANQLRQ 247 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 247 (961)
..++|+|+|.+|+||||++..++.....++ .. +.-|+... .+...+.++......+++... ..+..+......+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G-~k-VllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~ 177 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG-WK-TCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE 177 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC-Ce-EEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHH
Confidence 456899999999999999999998876542 32 33344322 222333334444444443211 1133333222333
Q ss_pred HHHcCCcEEEEEccc
Q 002133 248 ALKKKKRVLVILDDI 262 (961)
Q Consensus 248 ~l~~~kr~LlVlDdv 262 (961)
.+.....-++|+|-.
T Consensus 178 ~~~~~~~DvvIIDTp 192 (504)
T 2j37_W 178 KFKNENFEIIIVDTS 192 (504)
T ss_dssp HHHHTTCCEEEEEEC
T ss_pred HHHHCCCcEEEEeCC
Confidence 333223346677754
No 289
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.09 E-value=0.074 Score=47.86 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=34.7
Q ss_pred EEEeccCcCC--ccchhhhcCCCcCEEecCCCCCCcccChHHHhcCccCCEEEccCCC
Q 002133 608 ILSFRNSHIE--QLPEQIGNLTRLKLLDLSNCSKLKVIKPEVISRLSRLNELYMGNSF 663 (961)
Q Consensus 608 ~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 663 (961)
.++.+++.++ .+|..+ -.+|++|+|++ |.++.+++..|..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 5566666666 666432 23577777777 56777777767777777777777764
No 290
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.90 E-value=0.033 Score=53.62 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
-++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 291
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.83 E-value=0.036 Score=53.55 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+.|.|+|+.|+||||+|+.++....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 292
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.81 E-value=0.059 Score=58.61 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=36.3
Q ss_pred ccCCchHHHHHHHHHhc-------------c--CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 153 HFPSRNPVFQKMMESLR-------------D--SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.++|.+..++.+...+. . ...+.+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899888888877772 1 1335689999999999999999998763
No 293
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.79 E-value=0.03 Score=53.50 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVV 193 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v 193 (961)
.+|+|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.74 E-value=0.042 Score=53.93 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=26.0
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 170 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.....+|+|+|+.|.||||+|+.+......
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345679999999999999999999988763
No 295
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.73 E-value=0.041 Score=54.00 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
....+++|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 455789999999999999999998776
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.72 E-value=0.033 Score=53.18 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988754
No 297
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.71 E-value=0.069 Score=56.58 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=32.2
Q ss_pred CchHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 156 SRNPVFQKMMESLR----DSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 156 gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
+-+...+.+++.+. ..+...|.|+|+.|+||||+++.++.....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 33445555555553 345567999999999999999999987653
No 298
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.64 E-value=0.048 Score=57.58 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=30.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEec
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (961)
++.+||+|.|-|||||||.|..++......++ .+.-+++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk--kVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC--eEEEEecC
Confidence 56789999999999999999999988876543 24445554
No 299
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.64 E-value=0.073 Score=50.16 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
..++++|+|..|+||||++..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 45789999999999999999999887643
No 300
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.64 E-value=0.037 Score=53.81 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.-.+++|+|+.|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999764
No 301
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.57 E-value=0.057 Score=54.10 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=28.5
Q ss_pred HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 162 QKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 162 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+.+...+......+|+|+|.+|+|||||+..+.....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3333444445678899999999999999999998754
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.52 E-value=0.04 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVAR 195 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~ 195 (961)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.47 E-value=0.039 Score=54.24 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+|+|.|+.|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 304
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.41 E-value=0.077 Score=57.99 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+.++|++|+|||++|+.+++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998763
No 305
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.35 E-value=0.091 Score=54.75 Aligned_cols=55 Identities=13% Similarity=-0.048 Sum_probs=34.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcC-CCCEEEEEEecCCCCHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKED-LFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
....+|+|+|..|+||||+|+.+.......+ ....+..|+.....-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 3456899999999999999999988776421 122344445444332334444443
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.35 E-value=0.048 Score=53.05 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.+|.|.|+.|+||||+|+.+......
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998763
No 307
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.32 E-value=0.033 Score=55.35 Aligned_cols=113 Identities=11% Similarity=-0.002 Sum_probs=60.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCC--CCHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRP--DSLVEKANQLRQAL 249 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l 249 (961)
.-.++.|+|..|.||||++..++++...++ ... +.+..... .. ...++++.++...... ....+....+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~kV-li~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-VKY-LVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-CCE-EEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-CEE-EEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 346889999999999999999998886543 233 33332221 11 2224445555432221 12233333333322
Q ss_pred HcCCcEEEEEcccccc--cccccccCCCCCCCcccccCCCceEEEEEecchh
Q 002133 250 KKKKRVLVILDDIWTQ--INLDDIGIPFWDGEKQSVDNQGRWTLLLASRDQH 299 (961)
Q Consensus 250 ~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~ 299 (961)
..++.-+||+|.+... +..+.+ ..+. . .|..||+|-+...
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~--------~-~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILA--------E-NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHH--------H-TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHH--------h-CCCeEEEEecccc
Confidence 2234459999998653 111112 1111 1 3677888887543
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.32 E-value=0.051 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.+|.|.|+.|+||||+|+.+......
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987753
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.31 E-value=0.048 Score=52.45 Aligned_cols=26 Identities=46% Similarity=0.422 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.++|.|+|+.|+||||+|+.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999997764
No 310
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.25 E-value=0.27 Score=53.86 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=49.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHH--HHHHHHHHHhCCCccCC---CCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWK--EICGRIADQLGLEIVRP---DSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~---~~~~~~~~~l~ 246 (961)
...+++++|.+|+||||++..++.....++ ..+..++. +..... +.++......+++.... .+..+......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 446899999999999999999998887532 23344444 223222 23444455555542221 13334434444
Q ss_pred HHHHcCCcEEEEEccc
Q 002133 247 QALKKKKRVLVILDDI 262 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv 262 (961)
+.++...-=++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 4443222226677744
No 311
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.25 E-value=0.055 Score=52.64 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999988763
No 312
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.23 E-value=0.06 Score=53.69 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=29.4
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 161 FQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 161 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+.+.+.+.....++|+|+|.+|+|||||+..+.....
T Consensus 18 ~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 18 AEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 44444444445678999999999999999999988764
No 313
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.22 E-value=0.047 Score=52.25 Aligned_cols=25 Identities=32% Similarity=0.512 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+.|.|.|+.|+||||+|+.++....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 314
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.22 E-value=0.05 Score=55.64 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
++|.|.|+.|+||||+|+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 315
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.17 E-value=0.054 Score=53.51 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...+++|+|+.|+||||+++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999987653
No 316
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.14 E-value=0.14 Score=60.81 Aligned_cols=95 Identities=14% Similarity=0.198 Sum_probs=59.0
Q ss_pred CccccCCchHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC
Q 002133 150 GYVHFPSRNPVFQKMMESLRD-------------SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 150 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 216 (961)
...++.|-++..++|.+.+.- ...+-+.++|++|+|||.+|+++++..... ++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc---
Confidence 445667777777777665530 123457899999999999999999876521 233321
Q ss_pred HHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCCcEEEEEcccccc
Q 002133 217 WKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 217 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 265 (961)
.+ ++... .+ ..+..+..+.+.-+...++.|+||+++..
T Consensus 545 -~~----l~s~~----vG--ese~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 545 -PE----LLTMW----FG--ESEANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp -HH----HHTTT----CS--SCHHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred -ch----hhccc----cc--hHHHHHHHHHHHHHHcCCceeechhhhHH
Confidence 12 22111 11 11344555666655557899999999754
No 317
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.12 E-value=0.056 Score=60.90 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=36.3
Q ss_pred ccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 153 HFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.++|+++.++.+...+... .-|.++|++|+|||++|+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4789999998887776544 3588999999999999999987653
No 318
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.11 E-value=0.06 Score=51.60 Aligned_cols=25 Identities=48% Similarity=0.567 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.++|+|+.|+|||||++.++.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999988753
No 319
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.11 E-value=0.045 Score=53.03 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
++++|+|+.|+||||+++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 320
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.10 E-value=0.057 Score=51.58 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
..+++|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 321
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.09 E-value=0.58 Score=63.11 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=48.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccCCCCHHHHHHHHHHHHHcCC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVRPDSLVEKANQLRQALKKKK 253 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 253 (961)
+-+.++|++|+|||++|+.+.... ..+ ..+.++.+...+...+++.+...+......... +..--..++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCCc
Confidence 467899999999999998776542 122 345677887777777776666554322100000 000000257
Q ss_pred cEEEEEccccc
Q 002133 254 RVLVILDDIWT 264 (961)
Q Consensus 254 r~LlVlDdv~~ 264 (961)
+.++.+||+.-
T Consensus 1337 ~~VlFiDEinm 1347 (2695)
T 4akg_A 1337 NLVLFCDEINL 1347 (2695)
T ss_dssp CEEEEEETTTC
T ss_pred eEEEEeccccc
Confidence 78888999643
No 322
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.08 E-value=0.057 Score=53.14 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998763
No 323
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.00 E-value=0.061 Score=51.00 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998765
No 324
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.95 E-value=0.081 Score=51.12 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
...+|.|+|+.|+||||+++.++......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 44689999999999999999999987653
No 325
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.94 E-value=0.055 Score=52.48 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVAR 195 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~ 195 (961)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 326
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.91 E-value=0.055 Score=53.28 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
..++|.|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999998765
No 327
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.86 E-value=0.066 Score=52.97 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...+|+|+|+.|.|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998755
No 328
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.85 E-value=0.092 Score=54.74 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998764
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.85 E-value=0.069 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
....|+|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999876
No 330
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.85 E-value=0.054 Score=52.26 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 331
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.83 E-value=0.76 Score=51.01 Aligned_cols=28 Identities=39% Similarity=0.494 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
...+++|+|..|+||||+++.++.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3469999999999999999999988764
No 332
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.83 E-value=0.066 Score=50.83 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEE
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (961)
++++|+|..|.|||||++.+.......+.-...+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 689999999999999999999887754322344444
No 333
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.82 E-value=0.066 Score=54.50 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...+|+|+|+.|+||||+++.++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999997764
No 334
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.81 E-value=0.063 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.|+|.|+.|+||||+|+.++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998765
No 335
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.79 E-value=0.069 Score=52.03 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...+|+|.|+.|+||||+|+.+.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 336
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.79 E-value=0.058 Score=52.83 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999987653
No 337
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.79 E-value=0.046 Score=52.09 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVV 193 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v 193 (961)
.-.+++|+|+.|.|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999964
No 338
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.76 E-value=0.058 Score=51.92 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
|.|.|+|+.|+|||||++++....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998764
No 339
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.72 E-value=0.067 Score=51.88 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999987643
No 340
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.67 E-value=0.067 Score=53.65 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987654
No 341
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.64 E-value=0.072 Score=52.47 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998754
No 342
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.61 E-value=0.19 Score=49.74 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCE
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV 205 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~ 205 (961)
..+|+|.|+.|+||||+|+.+...... .+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 458999999999999999999988764 34554
No 343
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.61 E-value=0.4 Score=53.48 Aligned_cols=51 Identities=12% Similarity=-0.024 Sum_probs=37.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
-.++.|.|.+|+||||+|..++....... =..++|++.. .+..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 45889999999999999999998876432 1346777665 345677766654
No 344
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.58 E-value=0.074 Score=51.76 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+|+|.|+.|+||||+|+.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987653
No 345
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.56 E-value=0.065 Score=50.99 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
++|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 346
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.56 E-value=0.37 Score=48.78 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=32.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRI 224 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 224 (961)
-.++.|.|.+|+|||++|.+++.....+. -..+++++... +..++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeecccC--CHHHHHHHH
Confidence 45889999999999999999876533221 23455665543 455555444
No 347
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.55 E-value=0.071 Score=52.31 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999874
No 348
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.51 E-value=0.081 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
+..+|+|.|+.|+||||+|+.++...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998764
No 349
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.51 E-value=0.065 Score=52.72 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVAR 195 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~ 195 (961)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 350
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.48 E-value=0.073 Score=52.03 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+|+|.|+.|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 351
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.43 E-value=0.096 Score=54.95 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
...+++|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999988764
No 352
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.41 E-value=0.43 Score=53.36 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=36.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
.-.++.|.|.+|+||||+|..++....... =..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 345899999999999999999998876432 12467776544 4456666554
No 353
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.40 E-value=0.087 Score=52.07 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+.++|.|.|++|+||||.|+.++....
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4568999999999999999999998764
No 354
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.37 E-value=0.08 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..|++.|+.|+||||+|+.+.....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987653
No 355
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.34 E-value=0.079 Score=49.55 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445689999999999999999999876
No 356
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.33 E-value=0.096 Score=57.66 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=36.0
Q ss_pred cccCCchHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 152 VHFPSRNPVFQKMMESLRD--------------SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 152 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..++|.++.++.+...+.. ...+-+.++|++|+||||+|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3568888888777665521 1245688999999999999999998764
No 357
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.32 E-value=0.36 Score=62.71 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=60.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCcc-----CCCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIV-----RPDSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 246 (961)
.-+++.|+|++|+||||||.+++......+ ..++|++....++... ++.++.+.. ...+..+..+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 446899999999999999999998876432 3678998888776542 556665432 2234555555555
Q ss_pred HHHHcCCcEEEEEcccccc
Q 002133 247 QALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~~~ 265 (961)
...+..+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 5444556679999988654
No 358
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.26 E-value=0.076 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|+|||||++.+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44689999999999999999998765
No 359
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.22 E-value=0.09 Score=51.97 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.+|.|.|+.|+||||+|+.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 57899999999999999999988764
No 360
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.21 E-value=0.36 Score=61.91 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=60.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC-----CCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 246 (961)
.-+++.|.|.+|+||||||.+++......+ ..++|++....++.. .++.++.+... ..+..+....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G--~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 346899999999999999999988766432 468899888877654 25566654322 224455555555
Q ss_pred HHHHcCCcEEEEEcccccc
Q 002133 247 QALKKKKRVLVILDDIWTQ 265 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~~~ 265 (961)
...++.+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 5554556679999988644
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.19 E-value=0.099 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+|.|+|+.|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999998764
No 362
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.15 E-value=0.09 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 363
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.13 E-value=0.099 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 364
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.13 E-value=0.087 Score=54.13 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+|.|+|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998754
No 365
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.10 E-value=0.083 Score=52.09 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
...+|+|+|+.|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999754
No 366
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.09 E-value=0.071 Score=53.08 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34679999999999999999998764
No 367
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.04 E-value=0.18 Score=47.82 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
..++++|+|+.|+||||++..+......
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 3578999999999999999999987654
No 368
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.01 E-value=0.14 Score=49.57 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=27.7
Q ss_pred HHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 161 FQKMMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 161 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+..+..++.. +....+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444444432 2234799999999999999999998764
No 369
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.99 E-value=0.097 Score=61.10 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=39.6
Q ss_pred CCccccCCchHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 149 RGYVHFPSRNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 149 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.....++|.+..++.+...+... ..+.|+|+.|+||||+|+.++....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 44577899999888877777544 4789999999999999999998654
No 370
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.98 E-value=0.17 Score=51.31 Aligned_cols=28 Identities=18% Similarity=0.101 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
....+|.|.|+.|+||||+|+.+.....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999987653
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.98 E-value=0.26 Score=47.89 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988754
No 372
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.97 E-value=0.1 Score=54.97 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
....+|+|+|+.|+|||||++.+..-...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34568999999999999999999987654
No 373
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.97 E-value=0.11 Score=54.77 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 156 SRNPVFQKMMESLRD----SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 156 gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
|..+.+..+...+.. ....+|+|.|+.|+||||+|+.+.....
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444444444444332 2345899999999999999999987765
No 374
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.97 E-value=0.071 Score=51.31 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=18.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999987654
No 375
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.96 E-value=0.091 Score=50.81 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+++|+|+.|+||||+++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998775
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.95 E-value=0.12 Score=52.83 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999987653
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.90 E-value=0.095 Score=53.52 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...+|+|+|+.|+||||+++.++....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999997754
No 378
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.88 E-value=0.1 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...|.|.|+.|+||||+|+.++....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988764
No 379
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.82 E-value=0.086 Score=51.92 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVAR 195 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~ 195 (961)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 380
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.78 E-value=0.11 Score=51.37 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=26.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCE
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDV 205 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~ 205 (961)
..+|+|.|+.|+||||+|+.+...... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 457999999999999999999988764 34555
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.77 E-value=0.063 Score=53.25 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
+|+|+|+.|+||||+|+.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988753
No 382
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.75 E-value=0.1 Score=55.56 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=35.2
Q ss_pred HHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC-EEEEEEecCC
Q 002133 162 QKMMESLRD-SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFD-VVVDAEVTHT 214 (961)
Q Consensus 162 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~ 214 (961)
-++++.+.. .+-..++|+|..|+|||+|++++.+..... +-+ .++++-+.+.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccC
Confidence 355666652 334568999999999999999999876542 223 2356666654
No 383
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.73 E-value=0.11 Score=50.61 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
+|+|.|+.|+||||+|+.+......
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987753
No 384
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.70 E-value=0.1 Score=50.56 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998764
No 385
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.70 E-value=0.1 Score=52.97 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
....+|+|.|+.|.||||+++.+.....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999988653
No 386
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.69 E-value=0.1 Score=53.37 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999988654
No 387
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.58 E-value=0.13 Score=53.96 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
...+++|+|+.|+||||+++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4468999999999999999999988764
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.51 E-value=0.11 Score=51.95 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...|.|.|+.|+||||+|+.++....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 389
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.47 E-value=0.61 Score=51.77 Aligned_cols=51 Identities=24% Similarity=0.201 Sum_probs=36.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
.-.++.|.|.+|+||||+|.+++.....++ ..++|++.... ..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEms--~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMG--KKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSSC--TTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCCC--HHHHHHHHHH
Confidence 345899999999999999999998876542 35677765543 3455555543
No 390
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.44 E-value=0.11 Score=51.48 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 446899999999999999999988654
No 391
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.43 E-value=0.43 Score=61.19 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=65.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCccC-----CCCHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQLGLEIVR-----PDSLVEKANQLR 246 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 246 (961)
+-++|-|+|+.|+||||||.++....... =..++|+++.+..+..- ++.+|++... ++..++.+..+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 34789999999999999999999766543 35688999988877654 7777776543 345566777777
Q ss_pred HHHHcCCcEEEEEcccc
Q 002133 247 QALKKKKRVLVILDDIW 263 (961)
Q Consensus 247 ~~l~~~kr~LlVlDdv~ 263 (961)
..++++.--+||+|-|-
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 77787788899999774
No 392
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.40 E-value=0.11 Score=52.08 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
...|.|.|+.|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998765
No 393
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.36 E-value=0.12 Score=51.31 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987753
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.24 E-value=0.11 Score=52.70 Aligned_cols=26 Identities=42% Similarity=0.475 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
-.+|+|+|+.|+||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999998765
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.21 E-value=0.14 Score=50.54 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
....+|.|+|+.|+||||+|+.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456899999999999999999998765
No 396
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.13 E-value=0.15 Score=53.78 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=30.9
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC
Q 002133 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH 213 (961)
Q Consensus 170 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 213 (961)
....++|+|+|-||+||||+|..++.....+++ .++-|+...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~--~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 446789999999999999999999998876432 344555543
No 397
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.09 E-value=0.12 Score=52.10 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.. .+++|+|+.|.|||||.+.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 88999999999999999999754
No 398
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.03 E-value=0.45 Score=46.22 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=32.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
.|+|-|.-|+||||.++.+++....++ .+ +++..-.......+..++++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~~-v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-KK-VILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-Cc-EEEEECCCCCcHHHHHHHHhh
Confidence 378889999999999999999987643 33 333333333334445555543
No 399
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.98 E-value=0.33 Score=52.27 Aligned_cols=39 Identities=26% Similarity=0.537 Sum_probs=29.9
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 161 FQKMMESLR--DSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 161 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
..++.+.+. ..+..+|+|+|.+|+||||++..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334444443 456779999999999999999999887654
No 400
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.96 E-value=0.29 Score=53.42 Aligned_cols=89 Identities=20% Similarity=0.186 Sum_probs=56.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCC----EEEEEEecCCC-CHHHHHHHHHHHhCCC------ccCCCCHH---
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFD----VVVDAEVTHTP-DWKEICGRIADQLGLE------IVRPDSLV--- 239 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~--- 239 (961)
..++|.|..|+|||+|+.++++.... +-+ .++++-+.+.. ...++.+++...-..+ ....+...
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 34789999999999999999887543 123 66777777654 5566666665431111 00111111
Q ss_pred ---HHHHHHHHHHHc--CCcEEEEEccccc
Q 002133 240 ---EKANQLRQALKK--KKRVLVILDDIWT 264 (961)
Q Consensus 240 ---~~~~~l~~~l~~--~kr~LlVlDdv~~ 264 (961)
...-.+-++++. ++.+||++||+..
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 122345677763 7899999999954
No 401
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.96 E-value=0.14 Score=51.15 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..+|+|.|+.|.||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988764
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.87 E-value=0.16 Score=48.65 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
-.+|+|+|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 457899999999999999999987654
No 403
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.83 E-value=0.89 Score=51.59 Aligned_cols=53 Identities=17% Similarity=-0.009 Sum_probs=38.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQ 227 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 227 (961)
.-.++.|.|.+|+||||+|.+++.....+. =..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHH
Confidence 345889999999999999999998876431 12567776654 456777766543
No 404
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.79 E-value=0.14 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 405
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.76 E-value=0.15 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
...|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998765
No 406
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.72 E-value=0.14 Score=54.14 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.+|+|.|+.|+||||+|+.++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988653
No 407
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.70 E-value=0.17 Score=54.16 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
...+++|+|+.|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3468999999999999999999988764
No 408
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.70 E-value=0.15 Score=49.11 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=59.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecC---CCCHHHHHHHHH---HHhCC--CccCCC------CHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTH---TPDWKEICGRIA---DQLGL--EIVRPD------SLV 239 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~---~~l~~--~~~~~~------~~~ 239 (961)
..|-|++-.|.||||.|-..+-+....+ + .+.++...+ ......++..+. ...+. ...... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G-~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG-K-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT-C-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566666667999999999998876433 3 344443333 223334443331 00011 111100 112
Q ss_pred HHHHHHHHHHHcCCcEEEEEcccccccccc-----cccCCCCCCCcccccCCCceEEEEEecchhh
Q 002133 240 EKANQLRQALKKKKRVLVILDDIWTQINLD-----DIGIPFWDGEKQSVDNQGRWTLLLASRDQHV 300 (961)
Q Consensus 240 ~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~-----~l~~~~~~~~~~~~~~~~gs~IlvTtR~~~v 300 (961)
......++.+.+++-=|||||++-....+. .+...+.. ......||+|+|...-
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-------Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-------RPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-------SCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-------CcCCCEEEEECCCCcH
Confidence 234445555545566799999985432211 11111111 2345679999998643
No 409
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.68 E-value=0.19 Score=53.18 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=28.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEe
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEV 211 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 211 (961)
..++++|+|.+|+||||++..++......+ ..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 457899999999999999999998876532 23444443
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.56 E-value=0.3 Score=48.83 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
....|+|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3457999999999999999999998864
No 411
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.52 E-value=0.11 Score=50.99 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
-.+++|+|+.|.|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999876
No 412
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.47 E-value=0.096 Score=52.67 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=16.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVA-RQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 197 (961)
-.+++|+|+.|+||||+++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 413
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.41 E-value=0.17 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVAR 195 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~ 195 (961)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 414
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.39 E-value=0.17 Score=49.80 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988764
No 415
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.35 E-value=0.12 Score=51.91 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=26.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEE
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (961)
.-.+++|+|+.|.|||||.+.+..-.. ...+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEE
Confidence 446899999999999999999875432 23455555
No 416
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.32 E-value=0.12 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999998754
No 417
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.27 E-value=0.44 Score=47.72 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=28.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEE
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (961)
...|.|.|+.|+||||+++.++...... .+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 4589999999999999999999988764 45533433
No 418
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.24 E-value=0.16 Score=53.25 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
++|.|+|+.|+||||+|+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998764
No 419
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.18 E-value=0.16 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.647 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVA 194 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~ 194 (961)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 420
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.17 E-value=0.24 Score=50.71 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...++.++|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998776
No 421
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.11 E-value=0.19 Score=49.34 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+|.|.|++|+||||.|+.++....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998764
No 422
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.08 E-value=0.12 Score=53.86 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
+..+|+|.|..|+||||+|+.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.06 E-value=0.21 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...|.|.|+.|+||||+|+.++....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 424
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.05 E-value=0.26 Score=48.53 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEec
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (961)
.|.+.|.||+||||+|..++.....++ ++. ..+.+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~~V-~v~d~D 43 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-VRV-MAGVVE 43 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-CCE-EEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-CCE-EEEEeC
Confidence 477899999999999999998887543 443 334443
No 425
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.05 E-value=0.16 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
..|.|.|+.|+||||+|+.++....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998764
No 426
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.00 E-value=0.17 Score=53.32 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
....+|+|+|+.|.|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999988654
No 427
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.99 E-value=0.51 Score=46.44 Aligned_cols=52 Identities=21% Similarity=0.142 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIAD 226 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 226 (961)
..|.|.|+.|+||||+++.++...... .+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999988764 3433333332222234455555554
No 428
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.99 E-value=0.19 Score=50.21 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988763
No 429
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.98 E-value=0.21 Score=51.79 Aligned_cols=26 Identities=27% Similarity=0.223 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
..++|.|+|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999998764
No 430
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.95 E-value=0.18 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 431
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.94 E-value=0.18 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578999999999999999998654
No 432
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.94 E-value=0.14 Score=51.58 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 433
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.75 E-value=0.17 Score=51.42 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999864
No 434
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.74 E-value=0.15 Score=52.64 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999997543
No 435
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.68 E-value=0.15 Score=52.29 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=26.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEE
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (961)
.-.+++|+|+.|.|||||.+.++.-.. ...+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 446899999999999999999875432 23355555
No 436
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.63 E-value=0.14 Score=50.66 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3357999999999999999998754
No 437
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.55 E-value=0.16 Score=51.37 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=26.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEE
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (961)
.-.+++|+|+.|.|||||.+.++.-.. .....+++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~ 65 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIF 65 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEE
Confidence 345899999999999999999975432 23355555
No 438
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.55 E-value=0.19 Score=48.73 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
-.|+|+|..|+|||||.+.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 439
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.51 E-value=0.17 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4589999999999999999998643
No 440
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.50 E-value=0.16 Score=50.90 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998654
No 441
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.49 E-value=0.27 Score=54.05 Aligned_cols=101 Identities=20% Similarity=0.146 Sum_probs=60.7
Q ss_pred HHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCC--CCEEEEEEecCCC-CHHHHHHHHHHHhCCCc------c
Q 002133 164 MMESLR-DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDL--FDVVVDAEVTHTP-DWKEICGRIADQLGLEI------V 233 (961)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~ 233 (961)
.++.+. -.+-..++|.|..|+|||+|+.++++.....+. =+.++++-+.+.. ...++.+++...-.++. .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 344444 122345788999999999999999987654211 1466777777654 56677777765321110 0
Q ss_pred CCCCH------HHHHHHHHHHHH--cCCcEEEEEccccc
Q 002133 234 RPDSL------VEKANQLRQALK--KKKRVLVILDDIWT 264 (961)
Q Consensus 234 ~~~~~------~~~~~~l~~~l~--~~kr~LlVlDdv~~ 264 (961)
..+.. ....-.+-++++ +++.+|+++||+..
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 11111 112233556665 48999999999854
No 442
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.48 E-value=0.18 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999864
No 443
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.47 E-value=0.16 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999997643
No 444
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.46 E-value=0.34 Score=50.74 Aligned_cols=52 Identities=21% Similarity=0.097 Sum_probs=34.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIA 225 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 225 (961)
..-.+++|+|.+|+|||||++.++........ ..++|+.... +..++...+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESSS--CHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCcC--CHHHHHHHHH
Confidence 34468999999999999999999988765311 1355665433 3444444443
No 445
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.45 E-value=0.16 Score=52.00 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44689999999999999999987543
No 446
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.37 E-value=0.16 Score=51.84 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999997543
No 447
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.32 E-value=0.46 Score=47.00 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=25.6
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 170 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
......|.|.|+.|+||||+++.+.+....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345568999999999999999999998875
No 448
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.23 E-value=0.17 Score=51.31 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=26.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEE
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (961)
.-.+++|+|+.|.|||||.+.++.-.. .....+++
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i 68 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLI 68 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEE
Confidence 345899999999999999999976532 23355555
No 449
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.16 E-value=0.25 Score=50.93 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEec
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (961)
++|+|.|-||+||||+|..++.....++ . .+.-|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G-~-~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG-K-TIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT-C-CEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC-C-cEEEEcCC
Confidence 5788899999999999999999887543 2 34555554
No 450
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.13 E-value=0.35 Score=49.38 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
..-.+++|+|+.|.||||+++.+......
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 44568999999999999999999887653
No 451
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.12 E-value=0.24 Score=51.72 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455789999999999999999998876
No 452
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.10 E-value=0.17 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987543
No 453
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.05 E-value=0.18 Score=51.43 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997543
No 454
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.93 E-value=0.18 Score=51.53 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999997643
No 455
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.91 E-value=1.9 Score=58.87 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=40.5
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 002133 163 KMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKEICGRIADQL 228 (961)
Q Consensus 163 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 228 (961)
.+++.+...+ +-|.++|+.|+|||++++.+..... .+ ..+.++++...+...++..+-..+
T Consensus 1295 ~ll~~ll~~~-~pvLL~GptGtGKT~li~~~L~~l~---~~-~~~~infS~~Tta~~l~~~~e~~~ 1355 (3245)
T 3vkg_A 1295 DVLHAWLSEH-RPLILCGPPGSGKTMTLTSTLRAFP---DF-EVVSLNFSSATTPELLLKTFDHHC 1355 (3245)
T ss_dssp HHHHHHHHTT-CCCEEESSTTSSHHHHHHHHGGGCT---TE-EEEEECCCTTCCHHHHHHHHHHHE
T ss_pred HHHHHHHHCC-CcEEEECCCCCCHHHHHHHHHHhCC---CC-ceEEEEeeCCCCHHHHHHHHhhcc
Confidence 3444444333 3467999999999998877654321 12 346788888888888877775443
No 456
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.90 E-value=0.51 Score=52.90 Aligned_cols=44 Identities=20% Similarity=0.493 Sum_probs=33.2
Q ss_pred chHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHHhhcC
Q 002133 157 RNPVFQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQVVKED 201 (961)
Q Consensus 157 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 201 (961)
..+.+..+...+.+.+ +.+.|.|.+|+||||++.++.......+
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 4445666666665443 3899999999999999999998876543
No 457
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.90 E-value=0.68 Score=50.58 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc--------CCCC-EEEEEEecCCC-CHHHHHHHHHHHhCCC-------ccCCC
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKE--------DLFD-VVVDAEVTHTP-DWKEICGRIADQLGLE-------IVRPD 236 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~ 236 (961)
..++|.|..|+|||+|+.++++..... .+-+ .++++-+.+.. ...++.+++...-... ....+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 357899999999999999998875431 1122 56777777654 4566666654421111 11111
Q ss_pred CHH-----HHHHHHHHHHH--cCCcEEEEEccccc
Q 002133 237 SLV-----EKANQLRQALK--KKKRVLVILDDIWT 264 (961)
Q Consensus 237 ~~~-----~~~~~l~~~l~--~~kr~LlVlDdv~~ 264 (961)
... ...-.+-++++ +++.+||++||+..
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111 12234566776 37899999999954
No 458
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.85 E-value=0.19 Score=51.01 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34579999999999999999997654
No 459
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.83 E-value=0.18 Score=55.64 Aligned_cols=29 Identities=41% Similarity=0.516 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
...+|+|+|.+|+||||+|..++.....+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34689999999999999999999887643
No 460
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.83 E-value=0.19 Score=51.81 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=26.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEE
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (961)
..-.+++|+|+.|.|||||++.++.-.. .....+++
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~ 78 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLL 78 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEE
Confidence 3446899999999999999999976532 22345554
No 461
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.72 E-value=0.24 Score=48.24 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 462
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.66 E-value=0.33 Score=54.09 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=58.3
Q ss_pred HHHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHH----HhCCC-----
Q 002133 163 KMMESLR-DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIAD----QLGLE----- 231 (961)
Q Consensus 163 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~----~l~~~----- 231 (961)
+.++.+. -.+-..++|.|..|+|||+|++++++.. +-+.++++-+.+.. ...++.+++-+ ..+..
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rt 291 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERT 291 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGE
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHHhcccccccccccce
Confidence 3445554 2234568999999999999999987652 35678888888765 45566655432 11100
Q ss_pred ---ccC-CCCHHH------HHHHHHHHHH-cCCcEEEEEccccc
Q 002133 232 ---IVR-PDSLVE------KANQLRQALK-KKKRVLVILDDIWT 264 (961)
Q Consensus 232 ---~~~-~~~~~~------~~~~l~~~l~-~~kr~LlVlDdv~~ 264 (961)
... .+.... ..-.+-++++ .++.+||++||+..
T Consensus 292 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR 335 (588)
T 3mfy_A 292 VLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSR 335 (588)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHH
Confidence 000 111111 1122444554 37899999999964
No 463
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.65 E-value=0.26 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 464
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.62 E-value=0.2 Score=51.02 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999997643
No 465
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.59 E-value=0.31 Score=50.81 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=28.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEec
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVT 212 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 212 (961)
.++|+|.|-||+||||+|..++.....++ + .+.-|+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G-~-rVlliD~D 39 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG-K-KVMIVGCD 39 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT-C-CEEEEEEC
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEecC
Confidence 36788899999999999999998887543 2 34455554
No 466
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.58 E-value=0.2 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.-.+++|+|+.|.|||||.+.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4468999999999999999998754
No 467
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.55 E-value=0.22 Score=51.66 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.-.++.|+|++|+|||||+..++....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999997654
No 468
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.54 E-value=0.2 Score=51.80 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEE
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDA 209 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 209 (961)
.-.+++|+|+.|.|||||.+.++.-.. .....+++
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~ 80 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNL 80 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEE
Confidence 345899999999999999999976443 22355554
No 469
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.50 E-value=0.43 Score=51.49 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
....+++|+|+.|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455689999999999999999999754
No 470
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.43 E-value=0.25 Score=46.35 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVAR 195 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~ 195 (961)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999975
No 471
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.40 E-value=1.5 Score=48.62 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=57.8
Q ss_pred HHHHhc-cCCccEEEEEcCCCCcHHHHH-HHHHHHHhh----cCCCC-EEEEEEecCCC-CHHHHHHHHHHHhCCCc---
Q 002133 164 MMESLR-DSNVNMIGLYGMGGVGKTTLV-KVVARQVVK----EDLFD-VVVDAEVTHTP-DWKEICGRIADQLGLEI--- 232 (961)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~--- 232 (961)
.++.+. -.+-..++|.|..|+|||+|| ..+.+.... .++-+ .++++-+.+.. ...++.+++...-.+..
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 344443 123345799999999999995 466665542 12344 47788887765 45666666654322110
Q ss_pred ---cCCCCHHH------HHHHHHHHHH-cCCcEEEEEccccc
Q 002133 233 ---VRPDSLVE------KANQLRQALK-KKKRVLVILDDIWT 264 (961)
Q Consensus 233 ---~~~~~~~~------~~~~l~~~l~-~~kr~LlVlDdv~~ 264 (961)
...+.... ..-.+-++++ +++.+||++||+..
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 01111111 1223445554 37899999999854
No 472
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.34 E-value=0.32 Score=48.91 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987653
No 473
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.34 E-value=0.49 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 474
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.14 E-value=0.26 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 475
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.14 E-value=0.26 Score=50.70 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999998754
No 476
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.09 E-value=0.28 Score=52.87 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998754
No 477
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.06 E-value=1.2 Score=49.97 Aligned_cols=97 Identities=12% Similarity=0.197 Sum_probs=57.7
Q ss_pred HHHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCC-CHHHHHHHHHH----HhCCCcc---
Q 002133 163 KMMESLR-DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTP-DWKEICGRIAD----QLGLEIV--- 233 (961)
Q Consensus 163 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~----~l~~~~~--- 233 (961)
+.++.|. -.+-..++|.|..|+|||+|+.++++.. +-+.++++-+.+.. ...++++++-+ ..|....
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rt 296 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERT 296 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGE
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHHHhhcccccccccccce
Confidence 3445554 2334568999999999999999998763 35678888887763 44455544322 1121100
Q ss_pred ------CCCCHHH------HHHHHHHHHHc-CCcEEEEEcccc
Q 002133 234 ------RPDSLVE------KANQLRQALKK-KKRVLVILDDIW 263 (961)
Q Consensus 234 ------~~~~~~~------~~~~l~~~l~~-~kr~LlVlDdv~ 263 (961)
..+.... ..-.+-++++. ++.+||++|++.
T Consensus 297 vvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 297 VLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 0111111 12234455543 689999999985
No 478
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.97 E-value=0.24 Score=47.51 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVAR 195 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~ 195 (961)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 479
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.95 E-value=0.86 Score=44.82 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=26.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEE
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVV 206 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~ 206 (961)
-..|.|.|+.|+||||+++.+....... .+..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcc
Confidence 3578999999999999999999988753 35543
No 480
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.91 E-value=0.21 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
+.|.|.|+.|+||||||.++..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999865
No 481
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.71 E-value=0.56 Score=52.63 Aligned_cols=46 Identities=20% Similarity=0.060 Sum_probs=33.9
Q ss_pred cCCchHHHHHHHHHh--ccCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 154 FPSRNPVFQKMMESL--RDSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 154 ~~gr~~~~~~l~~~l--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
.+.|.+..+.+.+.. ...+..+|.+.|+.|+||||+|+.++.....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 345555555555554 2234568999999999999999999999864
No 482
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.69 E-value=0.41 Score=45.99 Aligned_cols=27 Identities=19% Similarity=0.003 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQVVKE 200 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 200 (961)
.++.|+|+.|+||||++..++.+...+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 478899999999999998877776543
No 483
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=87.57 E-value=0.69 Score=49.08 Aligned_cols=46 Identities=28% Similarity=0.263 Sum_probs=33.4
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCH
Q 002133 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDW 217 (961)
Q Consensus 170 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 217 (961)
....+++.+.|-||+||||+|..++......+ ..++-|+.....+.
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g--~~vllid~D~~~~l 58 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPAHNL 58 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTSS--SCEEEEECCSSCHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEECCCCCCh
Confidence 45567888899999999999999998887543 24555666544433
No 484
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=87.56 E-value=0.75 Score=49.09 Aligned_cols=45 Identities=27% Similarity=0.328 Sum_probs=32.5
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHHh--hcCCCCEEEEEEecCCCC
Q 002133 170 DSNVNMIGLYGMGGVGKTTLVKVVARQVV--KEDLFDVVVDAEVTHTPD 216 (961)
Q Consensus 170 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~~ 216 (961)
....+++.+.|.||+||||+|..++.... ..+ ..+.-|+.....+
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g--~~vllid~D~~~~ 61 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPN--EQFLLISTDPAHN 61 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSSCH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCCCC
Confidence 45568899999999999999999998876 332 2345555554433
No 485
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.52 E-value=0.29 Score=45.55 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 486
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.47 E-value=0.26 Score=50.44 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
-.+++|+|+.|.|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998753
No 487
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.39 E-value=0.24 Score=54.70 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.7
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 170 DSNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 170 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.....+|.|+|++|+||||+|+.++.+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999987654
No 488
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.31 E-value=0.33 Score=47.52 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=20.6
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHH
Q 002133 161 FQKMMESLRDSNVNMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 161 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.+.+.+.....+.-.|+|+|.+|+|||||...+.+.
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 333333333344446789999999999999988764
No 489
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.30 E-value=0.32 Score=45.51 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.|+|+|.+|+|||||+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 490
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.21 E-value=0.8 Score=44.95 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=30.2
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHH
Q 002133 175 MIGLY-GMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWK 218 (961)
Q Consensus 175 vi~I~-G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 218 (961)
+|+|+ +-||+||||+|..++.....++ .+.-++.....+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHH
Confidence 56665 7899999999999999887543 56667766554443
No 491
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.20 E-value=0.24 Score=51.78 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 171 SNVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 171 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345689999999999999999987543
No 492
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.06 E-value=0.33 Score=46.72 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 002133 175 MIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 175 vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
.|+++|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999865
No 493
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.02 E-value=1.8 Score=47.90 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=56.7
Q ss_pred HHHHhc-cCCccEEEEEcCCCCcHHHHHH-HHHHHHhhcCCCC-EEEEEEecCCC-CHHHHHHHHHHHhCCCc------c
Q 002133 164 MMESLR-DSNVNMIGLYGMGGVGKTTLVK-VVARQVVKEDLFD-VVVDAEVTHTP-DWKEICGRIADQLGLEI------V 233 (961)
Q Consensus 164 l~~~l~-~~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~ 233 (961)
.++.+. -.+-..++|.|..|+|||+||. .+.+.. .-+ .++++-+.+.. ...++.+++...-.+.. .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 344444 1233457999999999999964 666543 245 35778777664 45666666655322211 0
Q ss_pred CCCCHHH------HHHHHHHHHH-cCCcEEEEEccccc
Q 002133 234 RPDSLVE------KANQLRQALK-KKKRVLVILDDIWT 264 (961)
Q Consensus 234 ~~~~~~~------~~~~l~~~l~-~~kr~LlVlDdv~~ 264 (961)
..+.... ..-.+-++++ +++.+||++||+..
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 1111111 1123445554 37899999999854
No 494
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.96 E-value=0.64 Score=47.08 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=30.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhcCCCCEEEEEEecCCCCHHH
Q 002133 176 IGLYGMGGVGKTTLVKVVARQVVKEDLFDVVVDAEVTHTPDWKE 219 (961)
Q Consensus 176 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 219 (961)
|+|.|-||+||||+|..++.....++ ..++-|+.....+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHH
Confidence 66799999999999999999887543 3455566554444443
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.92 E-value=0.38 Score=48.56 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 002133 173 VNMIGLYGMGGVGKTTLVKVVARQVV 198 (961)
Q Consensus 173 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 198 (961)
...|+|.|..|+||||+++.++....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998763
No 496
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.87 E-value=0.59 Score=53.24 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=31.0
Q ss_pred CCchHHHHHHHHHh--ccCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 002133 155 PSRNPVFQKMMESL--RDSNVNMIGLYGMGGVGKTTLVKVVARQVVK 199 (961)
Q Consensus 155 ~gr~~~~~~l~~~l--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 199 (961)
+.+.+....+.... .-.+-.+++|+|+.|+|||||++.++.....
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 34444444444333 1234468999999999999999999988763
No 497
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.84 E-value=0.32 Score=51.96 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 172 NVNMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 172 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44689999999999999999998643
No 498
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.84 E-value=0.2 Score=58.04 Aligned_cols=45 Identities=13% Similarity=0.156 Sum_probs=30.5
Q ss_pred ccCCchHHHHHHHHHhccCCcc-----------EEEEEcCCCCcHHHHHHHHHHHH
Q 002133 153 HFPSRNPVFQKMMESLRDSNVN-----------MIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 153 ~~~gr~~~~~~l~~~l~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.++|.++....+...+.....+ -|.++|++|+|||++|+.+++..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 3566666555554444333211 48899999999999999997654
No 499
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.81 E-value=0.35 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQ 196 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~ 196 (961)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 500
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.80 E-value=0.34 Score=46.37 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 002133 174 NMIGLYGMGGVGKTTLVKVVARQV 197 (961)
Q Consensus 174 ~vi~I~G~gGiGKTtLa~~v~~~~ 197 (961)
.+.+|+|..|.||||++.+++.-.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998754
Done!