BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002134
(961 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 326/810 (40%), Positives = 465/810 (57%), Gaps = 70/810 (8%)
Query: 1 MSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWLN 60
+SY R++ D E+++ ++VKNGQLE V GGWVM DEANSH+ ++ Q+ EG WL
Sbjct: 131 ISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLK 190
Query: 61 DTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQS 120
+ P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 191 QFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 121 WDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQE 180
WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+ P + +
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISDQ 309
Query: 181 NVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNPS 240
NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF++INS
Sbjct: 310 NVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAH 369
Query: 241 LNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWSG 300
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWSG
Sbjct: 370 FNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWSG 417
Query: 301 YYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALFQ 360
YY SRP+ K +DRVL +RA EM+ A + A+ E+ +L ARR L+LFQ
Sbjct: 418 YYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQARRELSLFQ 469
Query: 361 HHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQV 418
HHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S F +
Sbjct: 470 HHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDS 529
Query: 419 R---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCVQ 475
R S + ++ S+ VV+ N L RE++V V+ P ++V D V+
Sbjct: 530 RWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVE 589
Query: 476 SQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVKL 527
+Q+SP + T ++R+ +KA +P +GL Y + +KP
Sbjct: 590 AQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----ISDSKPEHT 644
Query: 528 KYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHINGS 578
Y+S+ N S P ++ GD +I R L+F GLL+ I S
Sbjct: 645 SYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQDS 703
Query: 579 QNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRTA 633
+V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S +
Sbjct: 704 PHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLPS 762
Query: 634 WERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSDL 693
+ H T + G I+ V++ S ++ E+++R +T ID+ IFY+DL
Sbjct: 763 -----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSGDIFYTDL 808
Query: 694 NGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMXX 753
NG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEIM
Sbjct: 809 NGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASGELEIMQD 867
Query: 754 XXXXXXXXXXXXQGVLDNRAMNVVFHILVE 783
QGVLDN+ + ++ +++E
Sbjct: 868 RRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 326/810 (40%), Positives = 465/810 (57%), Gaps = 70/810 (8%)
Query: 1 MSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWLN 60
+SY R++ D E+++ ++VKNGQLE V GGWVM DEANSH+ ++ Q+ EG WL
Sbjct: 101 ISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLK 160
Query: 61 DTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQS 120
+ P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 161 QFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 220
Query: 121 WDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQE 180
WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+ P + +
Sbjct: 221 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISDQ 279
Query: 181 NVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNPS 240
NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF++INS
Sbjct: 280 NVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAH 339
Query: 241 LNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWSG 300
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWSG
Sbjct: 340 FNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWSG 387
Query: 301 YYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALFQ 360
YY SRP+ K +DRVL +RA EM+ A + A+ E+ +L ARR L+LFQ
Sbjct: 388 YYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQARRELSLFQ 439
Query: 361 HHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQV 418
HHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S F +
Sbjct: 440 HHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDS 499
Query: 419 R---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCVQ 475
R S + ++ S+ VV+ N L RE++V V+ P ++V D V+
Sbjct: 500 RWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVE 559
Query: 476 SQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVKL 527
+Q+SP + T ++R+ +KA +P +GL Y + +KP
Sbjct: 560 AQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----ISDSKPEHT 614
Query: 528 KYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHINGS 578
Y+S+ N S P ++ GD +I R L+F GLL+ I S
Sbjct: 615 SYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQDS 673
Query: 579 QNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRTA 633
+V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S +
Sbjct: 674 PHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLPS 732
Query: 634 WERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSDL 693
+ H T + G I+ V++ S ++ E+++R +T ID+ IFY+DL
Sbjct: 733 -----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSGDIFYTDL 778
Query: 694 NGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMXX 753
NG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEIM
Sbjct: 779 NGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASGELEIMQD 837
Query: 754 XXXXXXXXXXXXQGVLDNRAMNVVFHILVE 783
QGVLDN+ + ++ +++E
Sbjct: 838 RRLASDDERGLGQGVLDNKPVLHIYRLVLE 867
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 541 bits (1393), Expect = e-154, Method: Compositional matrix adjust.
Identities = 326/810 (40%), Positives = 465/810 (57%), Gaps = 70/810 (8%)
Query: 1 MSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWLN 60
+SY R++ D E+++ ++VKNGQLE V GGWVM DEANSH+ ++ Q+ EG WL
Sbjct: 131 ISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLK 190
Query: 61 DTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQS 120
+ P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 191 QFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 121 WDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQE 180
WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+ P + +
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISDQ 309
Query: 181 NVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNPS 240
NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF++INS
Sbjct: 310 NVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAH 369
Query: 241 LNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWSG 300
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWSG
Sbjct: 370 FNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWSG 417
Query: 301 YYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALFQ 360
YY SRP+ K +DRVL +RA EM+ A + A+ E+ +L ARR L+LFQ
Sbjct: 418 YYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQARRELSLFQ 469
Query: 361 HHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQV 418
HHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S F +
Sbjct: 470 HHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDS 529
Query: 419 R---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCVQ 475
R S + ++ S+ VV+ N L RE++V V+ P ++V D V+
Sbjct: 530 RWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVE 589
Query: 476 SQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVKL 527
+Q+SP + T ++R+ +KA +P +GL Y + +KP
Sbjct: 590 AQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----ISDSKPEHT 644
Query: 528 KYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHINGS 578
Y+S+ N S P ++ GD +I R L+F GLL+ I S
Sbjct: 645 SYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQDS 703
Query: 579 QNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRTA 633
+V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S +
Sbjct: 704 PHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLPS 762
Query: 634 WERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSDL 693
+ H T + G I+ V++ S ++ E+++R +T ID+ IFY+DL
Sbjct: 763 -----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSGDIFYTDL 808
Query: 694 NGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMXX 753
NG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEIM
Sbjct: 809 NGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASGELEIMQD 867
Query: 754 XXXXXXXXXXXXQGVLDNRAMNVVFHILVE 783
QGVLDN+ + ++ +++E
Sbjct: 868 RRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 540 bits (1392), Expect = e-153, Method: Compositional matrix adjust.
Identities = 326/810 (40%), Positives = 465/810 (57%), Gaps = 70/810 (8%)
Query: 1 MSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWLN 60
+SY R++ D E+++ ++VKNGQLE V GGWVM DEANSH+ ++ Q+ EG WL
Sbjct: 131 ISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLK 190
Query: 61 DTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQS 120
+ P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 191 QFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 121 WDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQE 180
WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+ P + +
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISDQ 309
Query: 181 NVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNPS 240
NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF++INS
Sbjct: 310 NVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAH 369
Query: 241 LNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWSG 300
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWSG
Sbjct: 370 FNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWSG 417
Query: 301 YYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALFQ 360
YY SRP+ K +DRVL +RA EM+ A + A+ E+ +L ARR L+LFQ
Sbjct: 418 YYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQARRELSLFQ 469
Query: 361 HHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQV 418
HHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S F +
Sbjct: 470 HHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDS 529
Query: 419 R---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCVQ 475
R S + ++ S+ VV+ N L RE++V V+ P ++V D V+
Sbjct: 530 RWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVE 589
Query: 476 SQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVKL 527
+Q+SP + T ++R+ +KA +P +GL Y + +KP
Sbjct: 590 AQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----ISDSKPEHT 644
Query: 528 KYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHINGS 578
Y+S+ N S P ++ GD +I R L+F GLL+ I S
Sbjct: 645 SYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQDS 703
Query: 579 QNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRTA 633
+V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S +
Sbjct: 704 PHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLPS 762
Query: 634 WERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSDL 693
+ H T + G I+ V++ S ++ E+++R +T ID+ IFY+DL
Sbjct: 763 -----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSGDIFYTDL 808
Query: 694 NGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMXX 753
NG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEIM
Sbjct: 809 NGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASGELEIMQD 867
Query: 754 XXXXXXXXXXXXQGVLDNRAMNVVFHILVE 783
QGVLDN+ + ++ +++E
Sbjct: 868 RRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 539 bits (1388), Expect = e-153, Method: Compositional matrix adjust.
Identities = 325/810 (40%), Positives = 465/810 (57%), Gaps = 70/810 (8%)
Query: 1 MSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWLN 60
+SY R++ D E+++ ++VKNGQLE V GGWVM DEANSH+ ++ Q+ EG WL
Sbjct: 131 ISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLK 190
Query: 61 DTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQS 120
+ P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 191 QFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 121 WDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQE 180
WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+ P + +
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISDQ 309
Query: 181 NVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNPS 240
NV R+ L+DQ+KKK+ LYRTN LL+PLGD+FR+ E + Q NY+ LF++INS
Sbjct: 310 NVAARSDLLVDQWKKKAELYRTNVLLIPLGDNFRFKQNTEWDVQRVNYERLFEHINSQAH 369
Query: 241 LNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWSG 300
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWSG
Sbjct: 370 FNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWSG 417
Query: 301 YYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALFQ 360
YY SRP+ K +DRVL +RA EM+ A + A+ E+ +L ARR L+LFQ
Sbjct: 418 YYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQARRELSLFQ 469
Query: 361 HHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQV 418
HHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S F +
Sbjct: 470 HHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDS 529
Query: 419 R---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCVQ 475
R S + ++ S+ VV+ N L RE++V V+ P ++V D V+
Sbjct: 530 RWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVE 589
Query: 476 SQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVKL 527
+Q+SP + T ++R+ +KA +P +GL Y + +KP
Sbjct: 590 AQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----ISDSKPEHT 644
Query: 528 KYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHINGS 578
Y+S+ N S P ++ GD +I R L+F GLL+ I S
Sbjct: 645 SYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQDS 703
Query: 579 QNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRTA 633
+V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S +
Sbjct: 704 PHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLPS 762
Query: 634 WERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSDL 693
+ H T + G I+ V++ S ++ E+++R +T ID+ IFY+DL
Sbjct: 763 -----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSGDIFYTDL 808
Query: 694 NGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMXX 753
NG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEIM
Sbjct: 809 NGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASGELEIMQD 867
Query: 754 XXXXXXXXXXXXQGVLDNRAMNVVFHILVE 783
QGVLDN+ + ++ +++E
Sbjct: 868 RRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 538 bits (1386), Expect = e-153, Method: Compositional matrix adjust.
Identities = 325/810 (40%), Positives = 464/810 (57%), Gaps = 70/810 (8%)
Query: 1 MSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWLN 60
+SY R++ D E+++ ++VKNGQLE V GGWVM DEANSH+ ++ Q+ EG WL
Sbjct: 131 ISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLK 190
Query: 61 DTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQS 120
+ P SWAI PFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 191 QFMNVTPTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 250
Query: 121 WDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQE 180
WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+ P + +
Sbjct: 251 WDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISDQ 309
Query: 181 NVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNPS 240
NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF++INS
Sbjct: 310 NVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAH 369
Query: 241 LNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWSG 300
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWSG
Sbjct: 370 FNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWSG 417
Query: 301 YYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALFQ 360
YY SRP+ K +DRVL +RA EM+ A + A+ E+ +L ARR L+LFQ
Sbjct: 418 YYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQARRELSLFQ 469
Query: 361 HHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQV 418
HHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S F +
Sbjct: 470 HHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDS 529
Query: 419 R---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCVQ 475
R S + ++ S+ VV+ N L RE++V V+ P ++V D V+
Sbjct: 530 RWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVE 589
Query: 476 SQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVKL 527
+Q+SP + T ++R+ +KA +P +GL Y + +KP
Sbjct: 590 AQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----ISDSKPEHT 644
Query: 528 KYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHINGS 578
Y+S+ N S P ++ GD +I R L+F GLL+ I S
Sbjct: 645 SYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQDS 703
Query: 579 QNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRTA 633
+V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S +
Sbjct: 704 PHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLPS 762
Query: 634 WERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSDL 693
+ H T + G I+ V++ S ++ E+++R +T ID+ IFY+DL
Sbjct: 763 -----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSGDIFYTDL 808
Query: 694 NGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMXX 753
NG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEIM
Sbjct: 809 NGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASGELEIMQD 867
Query: 754 XXXXXXXXXXXXQGVLDNRAMNVVFHILVE 783
QGVLDN+ + ++ +++E
Sbjct: 868 RRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 317/810 (39%), Positives = 449/810 (55%), Gaps = 70/810 (8%)
Query: 1 MSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWLN 60
+SY R++ D E+++ ++VKNGQLE V GGWV DEANSH+ ++ Q+ EG WL
Sbjct: 101 ISYFARFYHDLGENKKLQXKSIVKNGQLEFVTGGWVXPDEANSHWRNVLLQLTEGQTWLK 160
Query: 61 DTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQS 120
P SWAIDPFG+S T Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 161 QFXNVTPTASWAIDPFGHSPTXPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQI 220
Query: 121 WDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQE 180
WD + + +F H PFYSYDIPHTCGP+P VCCQFDF R G F +CPW+ P + +
Sbjct: 221 WDNKGDTALFTHXXPFYSYDIPHTCGPDPKVCCQFDFKRXGSFGL-SCPWKVPPRTISDQ 279
Query: 181 NVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNPS 240
NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF++INS
Sbjct: 280 NVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAH 339
Query: 241 LNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWSG 300
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWSG
Sbjct: 340 FNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWSG 387
Query: 301 YYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALFQ 360
YY SRP+ K DRVL +RA E + A + A+ E+ +L ARR L+LFQ
Sbjct: 388 YYTSRPYHKRXDRVLXHYVRAAEXLSA-WHSWDGMARIEE-------RLEQARRELSLFQ 439
Query: 361 HHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQV 418
HHDG+TGTAK HVV+DY R +L+ Q +++ LL Y D + S F +
Sbjct: 440 HHDGITGTAKTHVVVDYEQRXQEALKACQXVXQQSVYRLLTKPSIYSPDFSFSYFTLDDS 499
Query: 419 R---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCVQ 475
R S + ++ S+ VV N L RE++V V+ P ++V D V+
Sbjct: 500 RWPGSGVEDSRTTIILGEDILPSKHVVXHNTLPHWREQLVDFYVSSPFVSVTDLANNPVE 559
Query: 476 SQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVKL 527
+Q+SP + T ++R+ +KA +P GL Y + +KP
Sbjct: 560 AQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPXGLATYVLT-----ISDSKPEHT 614
Query: 528 KYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHINGS 578
Y+S+ N S P ++ GD +I R L+F GLL+ I S
Sbjct: 615 SYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQDS 673
Query: 579 QNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRTA 633
+V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S +
Sbjct: 674 PHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLPS 732
Query: 634 WERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSDL 693
+ H T G I+ V++ S ++ E++ R +T ID+ IFY+DL
Sbjct: 733 -----VVHQTIXRGGAPEIRNL-------VDIGS--LDNTEIVXRLETHIDSGDIFYTDL 778
Query: 694 NGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMXX 753
NG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEI
Sbjct: 779 NGLQFIKRRRLDKLPLQANYYPIPSGXFIEDAN-TRLTLLTGQPLGGSSLASGELEIXQD 837
Query: 754 XXXXXXXXXXXXQGVLDNRAMNVVFHILVE 783
QGVLDN+ + ++ +++E
Sbjct: 838 RRLASDDERGLGQGVLDNKPVLHIYRLVLE 867
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 118/250 (47%), Gaps = 30/250 (12%)
Query: 1 MSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWLN 60
+++ RWWR + + + LV+ G+LE GGWVMNDEA +HY AII+Q+ G +L
Sbjct: 72 IAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLE 131
Query: 61 DTIGF--IPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWR 118
+T G P+ +W IDPFG+S A L +MGF+ R Y+ KK +E +WR
Sbjct: 132 ETFGSDGRPRVAWHIDPFGHSREQASLFAQMGFDGFFFGRLDYQDKKVRKKTLQMEQVWR 191
Query: 119 QSWDTE-ETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVET 177
S + T+D+F ++ P+ P +C A PV
Sbjct: 192 ASTSLKPPTADLFTSVL-------PNMYNPPEGLCWDMLCA-------------DKPVVE 231
Query: 178 NQENVQERALKLLDQYKKKST----LYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFD 233
+ + + A +L+ + K +T LYRT ++ +G DF+Y N F+N L
Sbjct: 232 DTRSPEYNAKELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENAN---TWFKNLDKLIQ 288
Query: 234 YINSNPSLNA 243
+N+ N
Sbjct: 289 LVNAQQRANG 298
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 282
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 20/171 (11%)
Query: 590 SSQGSGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRTAWERSPISHSTRLYNGN 649
SSQ SGAY+F PN + + K L++E + +AW S RLY
Sbjct: 51 SSQASGAYIFRPNQNKPLFVSHWAQTHLVKASLVQEVHQ-NFSAW----CSQVVRLYP-- 103
Query: 650 NMIQEFLIEKEYHVELLSHNFN-DRELIVRYKTDIDNKRIFYSDLNGFQ-MSRRETYDKI 707
++ +E E+ V + +E+I R+ T + + +FY+D NG + + RR Y
Sbjct: 104 ---RQRHLELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREILERRRNYRPT 160
Query: 708 -------PLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIM 751
P+ GNYYP+ + ++ N Q +V + +S G +SL+DG LE+M
Sbjct: 161 WKLNQTEPVAGNYYPVNSRIYITDGNMQ-LTVLTDRSQGGSSLRDGSLELM 210
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 28/162 (17%)
Query: 356 LALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY----DQNLS 411
+A+ QHHD V+GT++ HV DY ++ + ++ MS A+ L G++E + N+S
Sbjct: 10 MAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGLKEDFAFCRKLNIS 69
Query: 412 QFEPEQVRSKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNW 471
Q ++ V+++NPL + + +V + V++ V D
Sbjct: 70 ICPLTQTAERFQ-----------------VIVYNPLGRKVDWMVRLPVSKHVYLVKDPGG 112
Query: 472 TCVQSQISPELRHGKSKIFTGRHRLHWKATIPALGLQVYYIA 513
V S + + + L + A +PA+G +Y ++
Sbjct: 113 KIVPSDVV-------TIPSSDSQELLFSALVPAVGFSIYSVS 147
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 84
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 286 DFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVAL 328
DFF YAD +W+GY+ SRP K +R+ L+ + AL
Sbjct: 30 DFFPYADGPYMFWTGYFSSRPALKRYERLSYNFLQVCNQLEAL 72
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 251 DDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSG 285
D YFR R+ AD++ YS+P + S FP+L G
Sbjct: 260 DPYFRVCRDVADKLKYSKPALLHS---RFFPALQG 291
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 251 DDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSG 285
D YFR R+ AD++ YS+P + S FP+L G
Sbjct: 260 DPYFRVCRDVADKLKYSKPALLHS---RFFPALQG 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,598,805
Number of Sequences: 62578
Number of extensions: 1212750
Number of successful extensions: 2322
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2255
Number of HSP's gapped (non-prelim): 17
length of query: 961
length of database: 14,973,337
effective HSP length: 108
effective length of query: 853
effective length of database: 8,214,913
effective search space: 7007320789
effective search space used: 7007320789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)